Query 021160
Match_columns 316
No_of_seqs 392 out of 2043
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 08:03:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 4.6E-44 9.9E-49 279.3 22.9 254 2-313 136-475 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-40 2.6E-45 263.1 19.2 255 2-313 196-454 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 5E-39 1.1E-43 254.0 15.5 217 1-264 239-458 (459)
4 KOG0263 Transcription initiati 100.0 2E-37 4.4E-42 262.3 20.2 205 30-270 447-653 (707)
5 KOG0271 Notchless-like WD40 re 100.0 5.6E-36 1.2E-40 234.2 18.6 216 2-264 226-479 (480)
6 KOG0279 G protein beta subunit 100.0 7.5E-35 1.6E-39 219.0 23.9 225 1-268 36-264 (315)
7 KOG0279 G protein beta subunit 100.0 6.1E-34 1.3E-38 214.2 25.0 239 31-301 12-265 (315)
8 KOG0286 G-protein beta subunit 100.0 7.4E-34 1.6E-38 215.0 24.9 247 2-300 76-326 (343)
9 KOG0315 G-protein beta subunit 100.0 9.8E-34 2.1E-38 209.9 22.6 223 4-271 62-293 (311)
10 KOG0273 Beta-transducin family 100.0 4.3E-33 9.3E-38 223.3 22.4 217 33-270 234-486 (524)
11 KOG0281 Beta-TrCP (transducin 100.0 6.7E-34 1.5E-38 220.3 15.8 251 2-306 216-485 (499)
12 KOG0645 WD40 repeat protein [G 100.0 1.1E-31 2.4E-36 201.2 25.8 238 31-300 11-263 (312)
13 KOG0286 G-protein beta subunit 100.0 1.6E-31 3.5E-36 202.5 24.6 241 31-302 52-307 (343)
14 KOG0315 G-protein beta subunit 100.0 3.2E-31 6.9E-36 196.6 24.7 255 1-302 18-292 (311)
15 KOG0284 Polyadenylation factor 100.0 7.4E-33 1.6E-37 218.3 15.8 251 2-298 117-380 (464)
16 KOG0276 Vesicle coat complex C 100.0 2.9E-32 6.2E-37 225.7 19.7 223 1-268 33-259 (794)
17 KOG0292 Vesicle coat complex C 100.0 4.1E-32 8.8E-37 232.8 20.5 226 2-274 30-288 (1202)
18 KOG0263 Transcription initiati 100.0 2.6E-32 5.7E-37 231.5 19.1 248 34-303 378-654 (707)
19 KOG0265 U5 snRNP-specific prot 100.0 1.2E-31 2.7E-36 203.7 20.2 234 31-299 44-297 (338)
20 KOG0285 Pleiotropic regulator 100.0 1.2E-31 2.5E-36 208.5 19.3 235 31-302 148-393 (460)
21 KOG0266 WD40 repeat-containing 100.0 1.2E-30 2.5E-35 225.1 27.2 236 33-301 158-412 (456)
22 KOG0285 Pleiotropic regulator 100.0 7.7E-31 1.7E-35 204.0 23.3 248 1-297 171-438 (460)
23 KOG0291 WD40-repeat-containing 100.0 9.5E-31 2.1E-35 220.9 25.6 252 2-300 329-614 (893)
24 KOG0319 WD40-repeat-containing 100.0 1.2E-31 2.6E-36 225.7 19.8 262 3-299 346-620 (775)
25 KOG0284 Polyadenylation factor 100.0 8E-32 1.7E-36 212.5 16.8 245 34-315 96-354 (464)
26 KOG0295 WD40 repeat-containing 100.0 9E-32 1.9E-36 209.4 16.7 223 2-270 129-368 (406)
27 KOG0266 WD40 repeat-containing 100.0 1.4E-30 3.1E-35 224.5 25.8 226 2-271 180-414 (456)
28 KOG0273 Beta-transducin family 100.0 8.6E-31 1.9E-35 210.2 22.0 232 2-266 256-523 (524)
29 KOG0319 WD40-repeat-containing 100.0 3.8E-31 8.2E-36 222.8 20.3 231 2-265 386-618 (775)
30 KOG0295 WD40 repeat-containing 100.0 1.6E-30 3.4E-35 202.5 18.6 198 31-264 190-404 (406)
31 KOG0282 mRNA splicing factor [ 100.0 5.9E-31 1.3E-35 211.7 14.9 217 1-264 235-503 (503)
32 KOG0277 Peroxisomal targeting 100.0 8.2E-30 1.8E-34 189.7 19.7 253 3-296 38-307 (311)
33 KOG0316 Conserved WD40 repeat- 100.0 2.2E-29 4.7E-34 185.5 20.7 232 32-302 15-261 (307)
34 KOG0313 Microtubule binding pr 100.0 2.9E-29 6.3E-34 196.4 22.3 262 1-300 123-400 (423)
35 KOG0645 WD40 repeat protein [G 100.0 9.4E-28 2E-32 180.2 27.7 223 2-267 36-262 (312)
36 PTZ00420 coronin; Provisional 100.0 2.8E-28 6.1E-33 210.9 28.1 228 2-268 53-295 (568)
37 cd00200 WD40 WD40 domain, foun 100.0 5.9E-28 1.3E-32 197.1 28.8 221 2-269 30-252 (289)
38 PLN00181 protein SPA1-RELATED; 100.0 4.9E-28 1.1E-32 223.3 30.5 250 2-297 504-792 (793)
39 PTZ00421 coronin; Provisional 100.0 2.9E-28 6.4E-33 209.7 26.9 212 31-270 72-294 (493)
40 KOG0275 Conserved WD40 repeat- 100.0 2.2E-29 4.7E-34 193.9 16.4 244 32-302 211-471 (508)
41 KOG0282 mRNA splicing factor [ 100.0 8.9E-30 1.9E-34 205.0 13.6 240 29-303 209-467 (503)
42 KOG0276 Vesicle coat complex C 100.0 1.1E-28 2.3E-33 204.7 20.0 213 2-259 76-292 (794)
43 KOG0264 Nucleosome remodeling 100.0 1.3E-28 2.7E-33 197.0 19.3 241 2-267 146-405 (422)
44 KOG0277 Peroxisomal targeting 100.0 8.2E-29 1.8E-33 184.4 16.4 220 2-264 82-307 (311)
45 PLN00181 protein SPA1-RELATED; 100.0 1.9E-27 4.1E-32 219.5 28.5 261 2-298 457-738 (793)
46 KOG0316 Conserved WD40 repeat- 100.0 1.1E-27 2.4E-32 176.6 20.4 222 2-271 38-262 (307)
47 KOG0292 Vesicle coat complex C 100.0 5.2E-28 1.1E-32 207.9 21.4 230 34-299 9-281 (1202)
48 KOG0283 WD40 repeat-containing 100.0 7.8E-28 1.7E-32 206.0 22.4 249 32-301 265-579 (712)
49 KOG0281 Beta-TrCP (transducin 100.0 4.1E-29 8.9E-34 193.9 12.7 213 2-268 256-479 (499)
50 KOG0296 Angio-associated migra 100.0 1E-27 2.2E-32 187.0 20.3 247 30-297 60-397 (399)
51 cd00200 WD40 WD40 domain, foun 100.0 1.2E-26 2.7E-31 189.3 28.1 235 31-301 6-252 (289)
52 KOG0291 WD40-repeat-containing 100.0 9.6E-27 2.1E-31 197.0 25.6 252 3-301 287-553 (893)
53 KOG0318 WD40 repeat stress pro 100.0 3.5E-26 7.5E-31 186.3 27.8 201 31-267 144-393 (603)
54 KOG0274 Cdc4 and related F-box 100.0 5.2E-27 1.1E-31 202.3 24.5 248 2-302 227-486 (537)
55 PTZ00421 coronin; Provisional 100.0 1.5E-26 3.2E-31 199.2 26.2 252 35-301 21-293 (493)
56 KOG0640 mRNA cleavage stimulat 100.0 1.8E-27 3.8E-32 182.2 18.0 223 31-272 109-341 (430)
57 KOG0318 WD40 repeat stress pro 100.0 2E-26 4.4E-31 187.6 24.1 180 31-227 56-268 (603)
58 KOG0306 WD40-repeat-containing 100.0 2E-27 4.4E-32 200.9 19.0 211 32-267 452-665 (888)
59 KOG0313 Microtubule binding pr 100.0 5.3E-27 1.2E-31 183.8 19.7 232 2-264 168-416 (423)
60 KOG0265 U5 snRNP-specific prot 100.0 5.1E-26 1.1E-30 173.3 21.9 221 1-268 67-298 (338)
61 KOG0275 Conserved WD40 repeat- 100.0 3.3E-28 7.1E-33 187.5 10.0 226 1-264 233-507 (508)
62 KOG0306 WD40-repeat-containing 100.0 7.1E-26 1.5E-30 191.6 23.6 260 3-299 394-665 (888)
63 KOG0305 Anaphase promoting com 99.9 1.1E-25 2.5E-30 187.7 24.0 253 4-302 198-465 (484)
64 KOG0264 Nucleosome remodeling 99.9 1.4E-26 2.9E-31 185.5 17.6 253 32-300 122-406 (422)
65 KOG0310 Conserved WD40 repeat- 99.9 7.2E-26 1.6E-30 182.8 20.8 198 34-268 68-270 (487)
66 PTZ00420 coronin; Provisional 99.9 3.2E-25 7E-30 192.0 26.3 221 53-300 50-295 (568)
67 KOG0269 WD40 repeat-containing 99.9 7.4E-27 1.6E-31 198.1 14.8 228 2-270 109-344 (839)
68 KOG0305 Anaphase promoting com 99.9 9.7E-26 2.1E-30 188.1 21.0 221 1-268 237-463 (484)
69 KOG0293 WD40 repeat-containing 99.9 2.1E-25 4.5E-30 176.9 21.2 250 32-314 222-486 (519)
70 KOG0293 WD40 repeat-containing 99.9 4.8E-25 1E-29 174.8 22.7 235 32-301 267-516 (519)
71 KOG0296 Angio-associated migra 99.9 8.3E-26 1.8E-30 176.4 17.7 235 1-266 126-398 (399)
72 KOG0274 Cdc4 and related F-box 99.9 2.6E-25 5.6E-30 191.9 20.2 215 1-271 269-487 (537)
73 KOG0268 Sof1-like rRNA process 99.9 1.2E-25 2.6E-30 175.4 16.0 248 31-299 63-346 (433)
74 KOG0278 Serine/threonine kinas 99.9 7.8E-26 1.7E-30 168.3 13.7 201 33-271 99-302 (334)
75 KOG0308 Conserved WD40 repeat- 99.9 1.6E-25 3.5E-30 186.7 17.1 240 2-271 46-290 (735)
76 KOG1407 WD40 repeat protein [F 99.9 6.4E-24 1.4E-28 159.0 22.6 224 2-271 41-266 (313)
77 KOG1446 Histone H3 (Lys4) meth 99.9 1.6E-23 3.4E-28 161.0 25.2 232 34-302 14-266 (311)
78 KOG1332 Vesicle coat complex C 99.9 2.3E-24 4.9E-29 159.9 19.2 226 1-266 31-286 (299)
79 KOG0772 Uncharacterized conser 99.9 1.8E-24 4E-29 176.0 20.4 268 1-295 187-484 (641)
80 KOG0278 Serine/threonine kinas 99.9 3.2E-25 6.9E-30 165.1 14.1 178 3-227 122-300 (334)
81 KOG0973 Histone transcription 99.9 1.6E-24 3.4E-29 190.5 20.8 216 32-268 67-357 (942)
82 KOG0268 Sof1-like rRNA process 99.9 6.8E-25 1.5E-29 171.3 16.3 230 1-268 87-347 (433)
83 KOG0641 WD40 repeat protein [G 99.9 4E-23 8.8E-28 151.9 24.4 205 31-267 86-304 (350)
84 KOG0310 Conserved WD40 repeat- 99.9 1.5E-24 3.3E-29 175.2 17.5 222 2-271 89-314 (487)
85 KOG4283 Transcription-coupled 99.9 3.1E-24 6.8E-29 163.4 18.1 215 32-269 41-279 (397)
86 KOG0269 WD40 repeat-containing 99.9 7.7E-25 1.7E-29 186.0 16.4 206 36-271 89-301 (839)
87 KOG1332 Vesicle coat complex C 99.9 2.1E-24 4.5E-29 160.1 16.4 235 32-296 9-284 (299)
88 KOG0289 mRNA splicing factor [ 99.9 1.9E-23 4.2E-28 166.7 22.9 226 35-296 220-460 (506)
89 KOG0289 mRNA splicing factor [ 99.9 1.6E-23 3.5E-28 167.2 22.2 203 29-264 256-460 (506)
90 KOG0302 Ribosome Assembly prot 99.9 2.5E-24 5.4E-29 168.9 17.3 195 2-225 174-379 (440)
91 KOG0300 WD40 repeat-containing 99.9 4E-24 8.8E-29 164.5 18.1 253 31-304 145-434 (481)
92 KOG0772 Uncharacterized conser 99.9 2.6E-24 5.7E-29 175.1 17.5 224 30-271 163-399 (641)
93 KOG0283 WD40 repeat-containing 99.9 4E-24 8.7E-29 183.4 19.3 200 30-267 365-577 (712)
94 KOG0643 Translation initiation 99.9 5.2E-23 1.1E-27 154.7 22.6 207 31-274 7-228 (327)
95 KOG0973 Histone transcription 99.9 1E-23 2.2E-28 185.5 21.3 256 33-301 12-358 (942)
96 KOG0267 Microtubule severing p 99.9 1.8E-25 3.9E-30 188.5 9.9 200 33-268 27-228 (825)
97 KOG1407 WD40 repeat protein [F 99.9 4.8E-23 1E-27 154.4 21.4 235 32-302 18-265 (313)
98 KOG0308 Conserved WD40 repeat- 99.9 2.4E-24 5.2E-29 179.8 15.9 241 33-299 20-286 (735)
99 KOG1446 Histone H3 (Lys4) meth 99.9 1.3E-22 2.8E-27 156.0 24.1 205 28-268 94-305 (311)
100 KOG0301 Phospholipase A2-activ 99.9 1.9E-23 4.2E-28 175.5 20.6 250 2-302 34-292 (745)
101 KOG0270 WD40 repeat-containing 99.9 2.6E-23 5.5E-28 166.4 19.9 235 1-268 200-451 (463)
102 KOG0294 WD40 repeat-containing 99.9 3.9E-23 8.6E-28 158.7 20.1 202 29-268 38-283 (362)
103 KOG2096 WD40 repeat protein [G 99.9 9.4E-23 2E-27 157.0 22.2 214 31-266 83-308 (420)
104 KOG0643 Translation initiation 99.9 4.1E-22 8.9E-27 149.9 23.1 246 23-298 41-317 (327)
105 KOG0288 WD40 repeat protein Ti 99.9 1.7E-24 3.7E-29 171.6 11.0 235 32-304 173-423 (459)
106 KOG0267 Microtubule severing p 99.9 1E-24 2.3E-29 183.9 9.7 192 31-258 67-260 (825)
107 KOG0299 U3 snoRNP-associated p 99.9 6.9E-23 1.5E-27 164.6 19.0 248 31-300 139-412 (479)
108 KOG0288 WD40 repeat protein Ti 99.9 2.1E-23 4.6E-28 165.4 15.4 222 2-271 196-422 (459)
109 KOG0646 WD40 repeat protein [G 99.9 1.3E-22 2.9E-27 163.3 19.9 207 34-268 81-309 (476)
110 KOG0639 Transducin-like enhanc 99.9 1.9E-23 4.2E-28 169.8 14.6 224 3-268 440-665 (705)
111 KOG0300 WD40 repeat-containing 99.9 8.5E-23 1.8E-27 157.3 17.4 231 3-268 170-430 (481)
112 KOG0299 U3 snoRNP-associated p 99.9 3.8E-22 8.2E-27 160.4 21.6 229 2-268 163-412 (479)
113 KOG0301 Phospholipase A2-activ 99.9 1.5E-22 3.3E-27 170.2 19.2 210 1-267 79-289 (745)
114 KOG0647 mRNA export protein (c 99.9 9.2E-22 2E-26 150.4 21.1 230 34-296 27-311 (347)
115 KOG0647 mRNA export protein (c 99.9 4.4E-22 9.6E-27 152.1 18.3 220 2-252 49-309 (347)
116 KOG0640 mRNA cleavage stimulat 99.9 3.2E-22 6.9E-27 153.6 15.6 223 2-264 193-424 (430)
117 KOG1274 WD40 repeat protein [G 99.9 1.1E-20 2.3E-25 163.8 25.3 233 32-299 11-263 (933)
118 KOG0646 WD40 repeat protein [G 99.9 8.1E-22 1.8E-26 158.8 17.2 203 2-242 102-326 (476)
119 KOG2048 WD40 repeat protein [G 99.9 6E-21 1.3E-25 160.3 21.7 229 34-297 25-265 (691)
120 KOG1539 WD repeat protein [Gen 99.9 3.7E-20 8.1E-25 159.0 26.6 283 1-296 222-646 (910)
121 KOG1034 Transcriptional repres 99.9 6E-22 1.3E-26 153.1 13.8 236 2-265 114-382 (385)
122 KOG0294 WD40 repeat-containing 99.9 1.9E-21 4.1E-26 149.5 16.3 198 2-227 62-284 (362)
123 KOG1036 Mitotic spindle checkp 99.9 9.6E-21 2.1E-25 145.2 19.5 223 2-256 34-294 (323)
124 KOG0302 Ribosome Assembly prot 99.9 4.6E-21 1E-25 150.7 18.0 215 31-268 148-380 (440)
125 KOG0303 Actin-binding protein 99.9 1.6E-20 3.4E-25 148.6 20.7 210 31-270 78-298 (472)
126 KOG4283 Transcription-coupled 99.9 3E-20 6.6E-25 141.9 21.1 260 2-297 65-364 (397)
127 KOG1274 WD40 repeat protein [G 99.9 1.9E-20 4E-25 162.4 22.2 219 2-267 34-263 (933)
128 KOG0641 WD40 repeat protein [G 99.9 8.2E-20 1.8E-24 134.6 22.2 202 31-266 133-349 (350)
129 KOG0639 Transducin-like enhanc 99.9 1.1E-20 2.4E-25 153.9 18.6 255 32-316 417-683 (705)
130 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.2E-19 7E-24 147.3 28.0 250 2-301 10-282 (300)
131 KOG4328 WD40 protein [Function 99.9 2.4E-20 5.2E-25 150.1 20.0 205 33-266 185-399 (498)
132 KOG0270 WD40 repeat-containing 99.9 8.5E-21 1.8E-25 152.1 17.2 235 48-300 193-451 (463)
133 KOG0307 Vesicle coat complex C 99.9 8.3E-22 1.8E-26 174.5 12.6 229 2-269 89-330 (1049)
134 KOG1334 WD40 repeat protein [G 99.9 4.1E-22 8.8E-27 161.4 8.7 246 2-258 254-501 (559)
135 KOG1408 WD40 repeat protein [F 99.9 2.3E-20 4.9E-25 158.1 18.1 222 3-267 481-714 (1080)
136 KOG2445 Nuclear pore complex c 99.9 1.4E-19 3E-24 138.9 20.4 237 2-266 34-318 (361)
137 KOG0321 WD40 repeat-containing 99.9 1E-19 2.2E-24 152.1 20.7 245 3-268 122-393 (720)
138 KOG1007 WD repeat protein TSSC 99.9 5E-20 1.1E-24 140.2 17.2 206 33-268 122-363 (370)
139 KOG1273 WD40 repeat protein [G 99.9 3.2E-19 6.9E-24 137.5 21.1 243 37-297 26-321 (405)
140 KOG1007 WD repeat protein TSSC 99.9 2.4E-19 5.2E-24 136.6 19.8 211 33-267 62-290 (370)
141 KOG1036 Mitotic spindle checkp 99.9 8E-19 1.7E-23 134.8 22.8 154 34-227 13-166 (323)
142 KOG1587 Cytoplasmic dynein int 99.9 6.4E-19 1.4E-23 151.5 24.7 273 3-301 222-519 (555)
143 KOG4328 WD40 protein [Function 99.8 2.5E-19 5.4E-24 144.3 20.0 253 2-297 209-494 (498)
144 KOG2445 Nuclear pore complex c 99.8 7.8E-19 1.7E-23 134.9 21.3 243 30-296 9-316 (361)
145 KOG2055 WD40 repeat protein [G 99.8 6.8E-19 1.5E-23 142.0 21.8 203 33-266 212-417 (514)
146 KOG1539 WD repeat protein [Gen 99.8 1.3E-19 2.9E-24 155.7 18.6 224 4-267 423-649 (910)
147 KOG1063 RNA polymerase II elon 99.8 2.9E-19 6.2E-24 150.7 19.7 222 31-268 358-650 (764)
148 KOG0321 WD40 repeat-containing 99.8 7.3E-19 1.6E-23 147.1 21.3 280 2-303 73-396 (720)
149 KOG1408 WD40 repeat protein [F 99.8 8.1E-19 1.8E-23 148.8 21.4 233 32-299 457-714 (1080)
150 KOG0650 WD40 repeat nucleolar 99.8 6E-20 1.3E-24 152.5 13.4 229 30-263 396-732 (733)
151 KOG2106 Uncharacterized conser 99.8 3.9E-18 8.5E-23 139.2 23.5 260 3-296 222-519 (626)
152 KOG0307 Vesicle coat complex C 99.8 7.3E-20 1.6E-24 162.3 14.7 243 34-301 64-330 (1049)
153 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 4.1E-18 8.9E-23 140.6 24.1 221 2-271 52-284 (300)
154 KOG1034 Transcriptional repres 99.8 1.7E-18 3.7E-23 134.1 19.5 242 32-302 36-341 (385)
155 KOG1273 WD40 repeat protein [G 99.8 3.4E-19 7.4E-24 137.3 15.1 248 2-283 44-337 (405)
156 KOG2096 WD40 repeat protein [G 99.8 6.7E-18 1.5E-22 130.5 22.1 268 2-302 107-406 (420)
157 KOG4378 Nuclear protein COP1 [ 99.8 6.5E-19 1.4E-23 143.5 17.4 255 4-300 13-282 (673)
158 KOG2048 WD40 repeat protein [G 99.8 7.6E-18 1.6E-22 141.9 22.6 220 2-267 89-320 (691)
159 KOG2919 Guanine nucleotide-bin 99.8 8.3E-19 1.8E-23 135.6 15.5 209 34-268 104-329 (406)
160 KOG4378 Nuclear protein COP1 [ 99.8 9.1E-19 2E-23 142.6 15.9 198 2-243 100-301 (673)
161 KOG2106 Uncharacterized conser 99.8 1.3E-17 2.9E-22 136.1 22.4 233 34-302 200-481 (626)
162 KOG2055 WD40 repeat protein [G 99.8 3.1E-18 6.7E-23 138.2 16.8 220 4-266 281-512 (514)
163 KOG0642 Cell-cycle nuclear pro 99.8 1.5E-18 3.3E-23 143.3 15.3 219 32-268 292-563 (577)
164 KOG0290 Conserved WD40 repeat- 99.8 9.2E-18 2E-22 128.1 18.1 223 3-255 121-355 (364)
165 KOG0303 Actin-binding protein 99.8 1E-17 2.2E-22 132.9 18.3 202 88-301 77-287 (472)
166 KOG0642 Cell-cycle nuclear pro 99.8 3.7E-18 8.1E-23 141.0 16.0 213 2-227 315-564 (577)
167 KOG1445 Tumor-specific antigen 99.8 4.4E-18 9.5E-23 142.7 16.3 204 42-268 587-800 (1012)
168 KOG0649 WD40 repeat protein [G 99.8 2.2E-17 4.9E-22 123.1 17.7 223 36-274 12-243 (325)
169 KOG1445 Tumor-specific antigen 99.8 5.8E-18 1.3E-22 142.0 15.1 233 2-268 602-846 (1012)
170 KOG0644 Uncharacterized conser 99.8 1.2E-18 2.6E-23 150.0 10.2 234 29-301 185-471 (1113)
171 KOG1188 WD40 repeat protein [G 99.8 6.6E-17 1.4E-21 126.0 18.4 256 3-299 50-347 (376)
172 KOG1063 RNA polymerase II elon 99.8 2.9E-16 6.4E-21 132.8 23.7 244 31-300 264-650 (764)
173 KOG2919 Guanine nucleotide-bin 99.8 3.1E-16 6.7E-21 121.6 21.0 246 37-304 52-334 (406)
174 KOG2110 Uncharacterized conser 99.8 6.8E-16 1.5E-20 121.7 21.7 159 34-227 87-251 (391)
175 KOG1009 Chromatin assembly com 99.8 2.2E-17 4.7E-22 131.4 13.3 182 34-225 13-196 (434)
176 KOG0771 Prolactin regulatory e 99.8 4.5E-17 9.7E-22 130.3 15.0 194 38-267 148-355 (398)
177 COG2319 FOG: WD40 repeat [Gene 99.7 3.9E-15 8.6E-20 128.3 28.2 220 2-269 133-362 (466)
178 KOG0322 G-protein beta subunit 99.7 1.8E-16 4E-21 119.5 15.8 242 2-265 34-322 (323)
179 KOG1188 WD40 repeat protein [G 99.7 2E-16 4.2E-21 123.4 16.4 191 48-269 41-245 (376)
180 KOG2394 WD40 protein DMR-N9 [G 99.7 1.3E-16 2.9E-21 131.3 16.2 170 3-204 195-384 (636)
181 KOG1587 Cytoplasmic dynein int 99.7 7.9E-16 1.7E-20 132.7 21.0 241 1-268 263-518 (555)
182 KOG1310 WD40 repeat protein [G 99.7 2.7E-16 5.8E-21 130.0 14.2 170 31-224 47-231 (758)
183 COG2319 FOG: WD40 repeat [Gene 99.7 1.2E-14 2.6E-19 125.3 24.8 222 2-269 86-317 (466)
184 KOG1538 Uncharacterized conser 99.7 8.9E-16 1.9E-20 129.8 16.3 241 4-296 34-291 (1081)
185 KOG4227 WD40 repeat protein [G 99.7 5.2E-15 1.1E-19 117.8 19.7 245 32-304 54-328 (609)
186 KOG2110 Uncharacterized conser 99.7 2E-14 4.4E-19 113.5 21.0 193 36-267 48-249 (391)
187 KOG0290 Conserved WD40 repeat- 99.7 8.8E-15 1.9E-19 112.0 18.3 214 32-268 94-320 (364)
188 KOG1524 WD40 repeat-containing 99.7 1.7E-15 3.6E-20 125.0 15.1 183 32-264 102-284 (737)
189 PF08662 eIF2A: Eukaryotic tra 99.7 8E-15 1.7E-19 111.9 17.7 153 38-228 9-183 (194)
190 KOG0649 WD40 repeat protein [G 99.7 1.9E-14 4.1E-19 107.6 19.0 200 32-266 60-274 (325)
191 KOG2394 WD40 protein DMR-N9 [G 99.7 6E-15 1.3E-19 121.7 17.2 185 43-242 182-381 (636)
192 PRK01742 tolB translocation pr 99.7 1.2E-14 2.7E-19 125.3 19.6 209 3-266 184-401 (429)
193 PRK11028 6-phosphogluconolacto 99.7 1.5E-13 3.2E-18 115.1 25.5 255 2-298 11-304 (330)
194 KOG1524 WD40 repeat-containing 99.7 7.6E-15 1.6E-19 121.2 16.8 207 48-297 76-285 (737)
195 KOG3881 Uncharacterized conser 99.7 9.8E-15 2.1E-19 116.0 16.6 187 2-227 124-323 (412)
196 KOG2139 WD40 repeat protein [G 99.6 4.9E-13 1.1E-17 105.6 25.0 187 2-223 119-308 (445)
197 KOG1517 Guanine nucleotide bin 99.6 8.4E-14 1.8E-18 123.6 21.9 267 4-300 1087-1383(1387)
198 KOG2111 Uncharacterized conser 99.6 9.5E-13 2.1E-17 102.3 24.6 179 3-227 75-259 (346)
199 KOG2321 WD40 repeat protein [G 99.6 5.3E-14 1.1E-18 117.2 18.7 273 2-293 6-329 (703)
200 KOG2139 WD40 repeat protein [G 99.6 2.5E-13 5.4E-18 107.2 20.1 207 34-263 98-308 (445)
201 KOG1272 WD40-repeat-containing 99.6 1.8E-15 4E-20 122.6 8.4 195 36-269 131-326 (545)
202 KOG1523 Actin-related protein 99.6 9.7E-14 2.1E-18 107.7 17.3 205 34-268 10-238 (361)
203 KOG1009 Chromatin assembly com 99.6 1.7E-14 3.7E-19 115.2 13.4 167 91-268 12-197 (434)
204 KOG0771 Prolactin regulatory e 99.6 1.8E-14 3.9E-19 115.6 13.3 185 2-226 165-356 (398)
205 KOG1517 Guanine nucleotide bin 99.6 1.3E-13 2.8E-18 122.4 19.6 235 2-268 1132-1383(1387)
206 KOG0322 G-protein beta subunit 99.6 1.4E-14 3E-19 109.5 11.1 170 34-223 150-322 (323)
207 PRK03629 tolB translocation pr 99.6 7.7E-13 1.7E-17 114.1 23.6 211 4-266 180-406 (429)
208 KOG0650 WD40 repeat nucleolar 99.6 3E-14 6.5E-19 119.1 13.2 154 34-222 566-733 (733)
209 PRK05137 tolB translocation pr 99.6 1.3E-12 2.7E-17 113.3 23.9 183 33-255 200-395 (435)
210 PRK04922 tolB translocation pr 99.6 8.8E-13 1.9E-17 114.1 22.8 211 4-266 185-411 (433)
211 KOG0644 Uncharacterized conser 99.6 1.3E-14 2.9E-19 125.6 10.2 232 3-267 212-469 (1113)
212 KOG1272 WD40-repeat-containing 99.6 5.1E-15 1.1E-19 120.1 7.0 207 3-264 151-360 (545)
213 PRK11028 6-phosphogluconolacto 99.6 4E-12 8.6E-17 106.4 24.3 205 36-267 81-305 (330)
214 KOG1963 WD40 repeat protein [G 99.6 7.6E-13 1.6E-17 115.4 20.0 236 3-266 37-322 (792)
215 KOG1523 Actin-related protein 99.5 1.5E-12 3.3E-17 101.2 18.0 166 32-227 53-239 (361)
216 PF08662 eIF2A: Eukaryotic tra 99.5 8.1E-13 1.8E-17 100.9 16.4 116 34-190 59-186 (194)
217 KOG4227 WD40 repeat protein [G 99.5 1.7E-13 3.6E-18 109.4 12.1 180 80-273 45-232 (609)
218 KOG1240 Protein kinase contain 99.5 9.2E-13 2E-17 118.7 18.1 230 33-271 1047-1339(1431)
219 PRK01742 tolB translocation pr 99.5 1.1E-12 2.3E-17 113.4 17.5 189 4-246 229-425 (429)
220 KOG2111 Uncharacterized conser 99.5 5.7E-12 1.2E-16 98.0 19.4 157 92-267 94-257 (346)
221 KOG4497 Uncharacterized conser 99.5 3.9E-12 8.5E-17 99.4 17.7 234 2-267 70-392 (447)
222 KOG0974 WD-repeat protein WDR6 99.5 1.3E-12 2.9E-17 115.9 16.9 193 40-268 93-290 (967)
223 PRK03629 tolB translocation pr 99.5 4.1E-12 8.8E-17 109.6 19.7 188 4-242 224-424 (429)
224 PRK02889 tolB translocation pr 99.5 7.3E-12 1.6E-16 108.1 21.3 185 33-257 194-391 (427)
225 TIGR02800 propeller_TolB tol-p 99.5 2.5E-11 5.5E-16 105.0 22.5 185 33-257 188-385 (417)
226 KOG3881 Uncharacterized conser 99.5 2.7E-12 5.9E-17 102.3 13.8 168 3-206 173-343 (412)
227 PRK05137 tolB translocation pr 99.5 4.4E-11 9.6E-16 103.7 22.6 208 57-302 182-416 (435)
228 PRK04922 tolB translocation pr 99.4 2.8E-11 6.2E-16 104.8 19.5 180 4-233 229-420 (433)
229 KOG1538 Uncharacterized conser 99.4 1.6E-12 3.4E-17 110.6 10.9 149 94-266 14-162 (1081)
230 KOG1310 WD40 repeat protein [G 99.4 1.6E-12 3.5E-17 108.0 10.6 162 86-265 44-230 (758)
231 KOG4547 WD40 repeat-containing 99.4 2.7E-11 5.9E-16 101.6 17.8 190 47-267 5-221 (541)
232 KOG1334 WD40 repeat protein [G 99.4 8.1E-12 1.7E-16 102.4 14.3 243 30-302 138-428 (559)
233 PRK00178 tolB translocation pr 99.4 2.4E-10 5.3E-15 99.2 24.0 184 33-256 197-393 (430)
234 KOG4547 WD40 repeat-containing 99.4 1.2E-10 2.6E-15 97.8 20.6 182 2-225 14-221 (541)
235 KOG1064 RAVE (regulator of V-A 99.4 2.5E-12 5.5E-17 119.9 10.7 189 33-271 2207-2403(2439)
236 PRK02889 tolB translocation pr 99.4 8.2E-11 1.8E-15 101.6 19.2 179 4-232 221-411 (427)
237 KOG0974 WD-repeat protein WDR6 99.4 2.4E-11 5.1E-16 108.1 15.7 147 42-226 141-290 (967)
238 KOG2321 WD40 repeat protein [G 99.4 2.2E-11 4.8E-16 101.9 14.4 168 34-224 175-343 (703)
239 KOG1409 Uncharacterized conser 99.4 4.7E-11 1E-15 94.0 15.1 209 29-268 19-272 (404)
240 KOG1963 WD40 repeat protein [G 99.4 2.3E-10 4.9E-15 100.3 20.7 205 38-271 164-380 (792)
241 PRK01029 tolB translocation pr 99.4 3.9E-10 8.6E-15 97.1 22.1 203 34-269 184-406 (428)
242 KOG0309 Conserved WD40 repeat- 99.3 6.5E-12 1.4E-16 108.0 9.4 205 31-267 111-340 (1081)
243 KOG1240 Protein kinase contain 99.3 1E-09 2.2E-14 99.6 22.5 201 2-225 1070-1335(1431)
244 KOG1354 Serine/threonine prote 99.3 2.3E-11 5E-16 95.7 10.6 228 34-273 84-366 (433)
245 PRK04792 tolB translocation pr 99.3 2.7E-09 5.9E-14 92.6 23.9 182 34-255 217-411 (448)
246 KOG0280 Uncharacterized conser 99.3 6.8E-10 1.5E-14 85.8 17.6 234 2-268 45-286 (339)
247 KOG2041 WD40 repeat protein [G 99.3 3.2E-10 6.8E-15 97.7 17.3 221 33-274 13-255 (1189)
248 PF02239 Cytochrom_D1: Cytochr 99.3 1.1E-09 2.4E-14 92.0 20.5 181 2-227 15-205 (369)
249 TIGR02800 propeller_TolB tol-p 99.2 1.6E-09 3.4E-14 93.9 19.4 176 3-228 214-401 (417)
250 KOG4497 Uncharacterized conser 99.2 2.3E-10 4.9E-15 89.8 12.3 138 39-214 13-153 (447)
251 COG4946 Uncharacterized protei 99.2 4.1E-09 9E-14 86.8 19.7 191 1-229 285-482 (668)
252 PRK01029 tolB translocation pr 99.2 2.9E-09 6.3E-14 91.7 19.5 166 35-232 231-411 (428)
253 KOG4532 WD40-like repeat conta 99.2 1.7E-08 3.7E-13 77.3 21.0 190 48-270 85-286 (344)
254 PRK04792 tolB translocation pr 99.2 3.4E-09 7.4E-14 92.0 19.8 181 4-234 243-435 (448)
255 KOG1064 RAVE (regulator of V-A 99.2 1.5E-10 3.2E-15 108.6 10.7 174 2-232 2229-2407(2439)
256 KOG3914 WD repeat protein WDR4 99.2 7.7E-10 1.7E-14 89.0 13.0 162 36-231 64-231 (390)
257 KOG4190 Uncharacterized conser 99.2 1.7E-10 3.7E-15 96.6 9.4 207 28-264 729-946 (1034)
258 PRK00178 tolB translocation pr 99.2 6.3E-09 1.4E-13 90.4 19.3 178 4-232 224-414 (430)
259 KOG1354 Serine/threonine prote 99.1 1.3E-09 2.9E-14 86.0 12.2 183 32-227 162-362 (433)
260 PLN02919 haloacid dehalogenase 99.1 5.6E-08 1.2E-12 92.4 24.2 215 36-270 625-892 (1057)
261 KOG2315 Predicted translation 99.1 1.1E-08 2.3E-13 85.9 17.1 166 38-244 221-409 (566)
262 PF02239 Cytochrom_D1: Cytochr 99.1 3.6E-08 7.8E-13 83.0 20.0 190 48-272 6-208 (369)
263 KOG2315 Predicted translation 99.1 2.6E-07 5.6E-12 77.8 23.5 214 3-267 146-391 (566)
264 KOG4714 Nucleoporin [Nuclear s 99.0 5.5E-09 1.2E-13 79.5 11.6 147 48-226 102-256 (319)
265 TIGR02658 TTQ_MADH_Hv methylam 99.0 3.4E-07 7.4E-12 75.7 22.3 245 1-271 25-335 (352)
266 PRK04043 tolB translocation pr 99.0 4.3E-07 9.3E-12 78.0 23.9 179 36-255 189-386 (419)
267 PF00400 WD40: WD domain, G-be 99.0 1.4E-09 3E-14 59.9 5.8 39 184-222 1-39 (39)
268 KOG3914 WD repeat protein WDR4 99.0 1.3E-08 2.9E-13 82.0 13.3 162 94-271 64-228 (390)
269 KOG0280 Uncharacterized conser 99.0 4.6E-08 9.9E-13 75.9 15.6 195 37-264 124-331 (339)
270 COG2706 3-carboxymuconate cycl 99.0 4.5E-06 9.8E-11 67.0 26.7 229 3-267 16-275 (346)
271 KOG0309 Conserved WD40 repeat- 98.9 3.4E-09 7.4E-14 91.7 8.6 204 34-267 24-233 (1081)
272 PF10282 Lactonase: Lactonase, 98.9 3.1E-06 6.7E-11 71.3 25.6 204 36-266 38-275 (345)
273 PRK04043 tolB translocation pr 98.9 1.9E-07 4.2E-12 80.1 18.3 176 4-231 214-407 (419)
274 COG5170 CDC55 Serine/threonine 98.9 3.9E-08 8.4E-13 77.0 12.0 219 35-264 86-365 (460)
275 PF10282 Lactonase: Lactonase, 98.9 5.9E-06 1.3E-10 69.6 26.1 235 2-267 61-323 (345)
276 KOG2695 WD40 repeat protein [G 98.9 9.1E-09 2E-13 81.5 8.2 134 34-193 252-387 (425)
277 KOG1409 Uncharacterized conser 98.9 2.8E-07 6.1E-12 73.2 15.9 177 34-225 68-271 (404)
278 KOG2695 WD40 repeat protein [G 98.9 9.9E-09 2.1E-13 81.3 7.8 147 106-274 227-384 (425)
279 KOG2041 WD40 repeat protein [G 98.9 3.1E-07 6.8E-12 79.8 17.4 233 2-271 35-342 (1189)
280 KOG4532 WD40-like repeat conta 98.9 4.4E-07 9.5E-12 69.8 16.3 146 48-227 129-285 (344)
281 PF15492 Nbas_N: Neuroblastoma 98.8 1.3E-06 2.7E-11 68.1 18.6 167 37-227 46-262 (282)
282 TIGR02658 TTQ_MADH_Hv methylam 98.8 2.7E-06 5.8E-11 70.5 21.1 212 2-231 76-338 (352)
283 KOG4714 Nucleoporin [Nuclear s 98.8 6.2E-08 1.3E-12 74.0 10.2 126 36-180 181-316 (319)
284 PF04762 IKI3: IKI3 family; I 98.8 2.1E-06 4.6E-11 80.5 22.2 206 34-265 120-378 (928)
285 PLN02919 haloacid dehalogenase 98.8 7.9E-07 1.7E-11 84.7 19.4 186 38-228 686-892 (1057)
286 COG5170 CDC55 Serine/threonine 98.8 4.8E-07 1E-11 71.0 14.1 230 34-273 26-316 (460)
287 PF08450 SGL: SMP-30/Gluconola 98.7 1.9E-05 4.1E-10 63.2 23.4 217 39-295 4-243 (246)
288 KOG4190 Uncharacterized conser 98.7 1.4E-07 3.1E-12 79.5 10.6 220 2-264 756-986 (1034)
289 KOG2314 Translation initiation 98.7 4.1E-06 8.9E-11 70.9 18.9 110 154-268 448-575 (698)
290 COG4946 Uncharacterized protei 98.7 3E-06 6.5E-11 70.4 17.8 144 31-211 356-505 (668)
291 PF13360 PQQ_2: PQQ-like domai 98.7 5.5E-06 1.2E-10 66.0 18.4 217 2-270 2-234 (238)
292 PF04762 IKI3: IKI3 family; I 98.6 9.4E-06 2E-10 76.3 20.3 210 34-267 75-334 (928)
293 TIGR03300 assembly_YfgL outer 98.6 2.9E-05 6.3E-10 66.4 22.1 214 48-302 106-342 (377)
294 KOG1645 RING-finger-containing 98.6 1.9E-06 4.2E-11 70.0 13.5 79 30-124 189-269 (463)
295 PF00400 WD40: WD domain, G-be 98.6 1.8E-07 3.9E-12 51.2 5.0 38 140-180 2-39 (39)
296 COG2706 3-carboxymuconate cycl 98.6 0.00023 5E-09 57.5 24.5 206 38-268 92-323 (346)
297 TIGR03300 assembly_YfgL outer 98.5 4.6E-05 9.9E-10 65.2 21.2 190 48-271 146-343 (377)
298 PF04053 Coatomer_WDAD: Coatom 98.5 8.4E-06 1.8E-10 70.1 15.9 142 36-226 34-175 (443)
299 KOG1008 Uncharacterized conser 98.5 5.2E-08 1.1E-12 83.4 2.2 202 35-267 57-276 (783)
300 PF15492 Nbas_N: Neuroblastoma 98.5 0.0002 4.3E-09 56.2 21.3 204 40-268 3-261 (282)
301 PF07433 DUF1513: Protein of u 98.5 9.3E-05 2E-09 59.5 20.2 204 36-271 6-252 (305)
302 KOG1832 HIV-1 Vpr-binding prot 98.5 1.8E-07 3.9E-12 83.1 4.8 154 31-227 1098-1258(1516)
303 KOG2314 Translation initiation 98.5 5.4E-05 1.2E-09 64.4 18.8 197 37-271 213-438 (698)
304 PF08450 SGL: SMP-30/Gluconola 98.5 0.00025 5.4E-09 56.8 22.4 172 37-242 42-231 (246)
305 KOG1275 PAB-dependent poly(A) 98.5 6E-06 1.3E-10 73.9 13.8 171 4-224 158-342 (1118)
306 KOG1920 IkappaB kinase complex 98.5 6.7E-05 1.4E-09 69.5 20.7 212 35-267 69-323 (1265)
307 KOG2066 Vacuolar assembly/sort 98.4 3.2E-05 6.9E-10 68.5 16.4 141 45-225 82-234 (846)
308 KOG1912 WD40 repeat protein [G 98.4 7.1E-05 1.5E-09 66.2 18.4 219 4-267 36-305 (1062)
309 PF13360 PQQ_2: PQQ-like domai 98.4 5.1E-05 1.1E-09 60.4 16.5 208 56-301 2-233 (238)
310 KOG0882 Cyclophilin-related pe 98.4 1.2E-05 2.7E-10 66.4 12.5 208 32-271 7-236 (558)
311 PF11768 DUF3312: Protein of u 98.3 0.00012 2.6E-09 62.9 17.7 71 154-227 262-332 (545)
312 PF07433 DUF1513: Protein of u 98.3 0.0009 1.9E-08 54.0 21.5 193 4-230 29-253 (305)
313 KOG2066 Vacuolar assembly/sort 98.3 4.8E-05 1E-09 67.4 15.4 182 34-268 39-235 (846)
314 KOG1920 IkappaB kinase complex 98.3 0.00022 4.8E-09 66.3 20.0 172 34-227 109-325 (1265)
315 KOG0882 Cyclophilin-related pe 98.2 9.8E-06 2.1E-10 66.9 9.4 187 1-227 28-234 (558)
316 KOG1912 WD40 repeat protein [G 98.2 0.00012 2.5E-09 65.0 16.2 156 33-224 14-186 (1062)
317 PF11768 DUF3312: Protein of u 98.2 8.9E-05 1.9E-09 63.7 15.0 116 36-184 207-331 (545)
318 KOG1275 PAB-dependent poly(A) 98.2 4.1E-05 8.9E-10 68.8 12.5 179 46-264 146-340 (1118)
319 KOG3621 WD40 repeat-containing 98.2 0.00047 1E-08 60.5 18.3 123 33-183 32-155 (726)
320 COG5354 Uncharacterized protei 98.1 0.0013 2.8E-08 55.7 19.5 201 35-268 72-308 (561)
321 COG5354 Uncharacterized protei 98.1 0.00069 1.5E-08 57.3 17.1 154 91-268 31-212 (561)
322 PRK11138 outer membrane biogen 98.1 0.003 6.4E-08 54.5 21.7 188 48-271 161-358 (394)
323 smart00320 WD40 WD40 repeats. 98.0 2.3E-05 4.9E-10 42.0 5.8 39 184-222 2-40 (40)
324 KOG2114 Vacuolar assembly/sort 98.0 0.0015 3.3E-08 58.8 18.5 197 41-267 30-244 (933)
325 KOG3617 WD40 and TPR repeat-co 98.0 0.00022 4.7E-09 64.0 13.3 73 34-122 59-132 (1416)
326 PRK11138 outer membrane biogen 98.0 0.0018 4E-08 55.8 19.0 213 48-301 121-356 (394)
327 PF03178 CPSF_A: CPSF A subuni 97.9 0.0021 4.5E-08 53.7 17.9 186 3-225 2-203 (321)
328 PRK02888 nitrous-oxide reducta 97.9 0.0019 4.2E-08 57.1 17.6 105 100-225 284-405 (635)
329 COG0823 TolB Periplasmic compo 97.9 0.00038 8.3E-09 59.8 13.2 161 4-213 219-388 (425)
330 COG0823 TolB Periplasmic compo 97.9 0.002 4.3E-08 55.5 17.4 156 35-227 193-361 (425)
331 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0064 1.4E-07 47.4 17.6 148 41-225 17-166 (354)
332 PF08596 Lgl_C: Lethal giant l 97.8 0.0022 4.7E-08 54.7 16.7 218 36-271 3-295 (395)
333 KOG2114 Vacuolar assembly/sort 97.8 0.0032 7E-08 56.8 17.6 168 45-232 75-252 (933)
334 KOG3621 WD40 repeat-containing 97.8 0.0003 6.6E-09 61.7 10.9 132 92-242 33-177 (726)
335 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.002 4.4E-08 43.4 12.3 102 37-177 2-109 (111)
336 KOG1008 Uncharacterized conser 97.8 8.3E-06 1.8E-10 70.3 1.0 163 32-225 100-276 (783)
337 PF06433 Me-amine-dh_H: Methyl 97.7 0.011 2.3E-07 48.6 18.2 183 1-227 15-216 (342)
338 KOG4640 Anaphase-promoting com 97.7 0.00026 5.7E-09 61.3 9.0 72 154-227 23-95 (665)
339 PF08553 VID27: VID27 cytoplas 97.7 0.0023 4.9E-08 58.8 15.1 94 3-121 552-647 (794)
340 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.017 3.7E-07 45.1 17.7 57 2-70 72-128 (354)
341 KOG2444 WD40 repeat protein [G 97.7 0.00012 2.6E-09 55.5 5.7 105 105-226 72-179 (238)
342 PF06977 SdiA-regulated: SdiA- 97.6 0.023 5.1E-07 45.1 18.8 167 34-226 21-203 (248)
343 KOG1645 RING-finger-containing 97.6 0.00043 9.4E-09 56.8 8.0 84 140-227 184-269 (463)
344 PF08553 VID27: VID27 cytoplas 97.5 0.003 6.6E-08 57.9 13.6 146 48-223 494-646 (794)
345 KOG1832 HIV-1 Vpr-binding prot 97.5 0.00023 4.9E-09 64.3 5.9 125 139-271 1091-1219(1516)
346 PF04841 Vps16_N: Vps16, N-ter 97.5 0.058 1.3E-06 46.7 21.8 62 161-226 187-248 (410)
347 smart00320 WD40 WD40 repeats. 97.4 0.00032 7E-09 37.2 4.1 30 33-63 11-40 (40)
348 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.023 5.1E-07 48.2 17.0 249 2-266 22-313 (353)
349 PRK02888 nitrous-oxide reducta 97.4 0.026 5.6E-07 50.3 17.3 92 173-267 295-405 (635)
350 PRK13616 lipoprotein LpqB; Pro 97.3 0.046 1E-06 49.4 18.4 148 35-223 350-524 (591)
351 KOG4640 Anaphase-promoting com 97.3 0.0016 3.4E-08 56.7 8.7 93 92-204 20-115 (665)
352 PF06977 SdiA-regulated: SdiA- 97.3 0.037 7.9E-07 44.0 15.6 184 92-296 21-239 (248)
353 KOG2079 Vacuolar assembly/sort 97.3 0.0025 5.4E-08 59.0 9.8 100 48-180 100-201 (1206)
354 KOG2395 Protein involved in va 97.2 0.0054 1.2E-07 52.5 10.9 142 49-223 348-499 (644)
355 KOG3617 WD40 and TPR repeat-co 97.2 0.00094 2E-08 60.2 6.6 107 97-224 20-131 (1416)
356 COG3391 Uncharacterized conser 97.2 0.12 2.5E-06 44.4 20.2 177 3-227 96-286 (381)
357 PHA02713 hypothetical protein; 97.2 0.026 5.6E-07 51.0 15.4 91 175-267 433-534 (557)
358 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.037 8.1E-07 37.5 13.6 102 154-261 2-109 (111)
359 PF04053 Coatomer_WDAD: Coatom 97.1 0.016 3.4E-07 50.3 12.8 182 35-266 69-262 (443)
360 PF08596 Lgl_C: Lethal giant l 97.1 0.13 2.7E-06 44.2 17.7 172 33-227 85-293 (395)
361 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0024 5.2E-08 36.0 5.0 34 194-227 11-44 (47)
362 PF03178 CPSF_A: CPSF A subuni 97.0 0.12 2.6E-06 43.2 17.4 176 3-221 62-262 (321)
363 COG3386 Gluconolactonase [Carb 96.9 0.16 3.5E-06 41.9 16.7 111 90-213 160-275 (307)
364 PF00930 DPPIV_N: Dipeptidyl p 96.9 0.011 2.4E-07 50.2 10.3 102 161-264 1-129 (353)
365 KOG4499 Ca2+-binding protein R 96.9 0.13 2.8E-06 39.8 14.4 101 96-204 161-263 (310)
366 COG3386 Gluconolactonase [Carb 96.9 0.2 4.3E-06 41.4 18.6 118 93-230 111-249 (307)
367 PF12894 Apc4_WD40: Anaphase-p 96.9 0.005 1.1E-07 34.7 5.2 31 34-65 11-41 (47)
368 KOG4441 Proteins containing BT 96.7 0.16 3.5E-06 45.9 16.7 219 48-302 286-535 (571)
369 KOG2079 Vacuolar assembly/sort 96.7 0.0053 1.2E-07 56.9 6.9 100 163-265 98-202 (1206)
370 KOG4441 Proteins containing BT 96.6 0.26 5.6E-06 44.7 17.0 207 4-258 302-533 (571)
371 PF04841 Vps16_N: Vps16, N-ter 96.6 0.41 8.9E-06 41.5 18.1 31 93-123 81-111 (410)
372 KOG2395 Protein involved in va 96.6 0.023 5.1E-07 48.9 9.4 71 35-122 431-501 (644)
373 cd00216 PQQ_DH Dehydrogenases 96.6 0.52 1.1E-05 42.0 20.3 194 48-270 62-323 (488)
374 PF00780 CNH: CNH domain; Int 96.5 0.35 7.6E-06 39.3 20.7 159 48-231 8-172 (275)
375 PF06433 Me-amine-dh_H: Methyl 96.5 0.4 8.8E-06 39.7 15.9 159 43-227 143-323 (342)
376 PF14727 PHTB1_N: PTHB1 N-term 96.3 0.63 1.4E-05 40.2 16.6 162 43-223 33-203 (418)
377 PRK13616 lipoprotein LpqB; Pro 96.3 0.17 3.8E-06 45.8 13.9 146 93-266 350-525 (591)
378 KOG2444 WD40 repeat protein [G 96.2 0.0092 2E-07 45.6 4.4 105 162-267 68-178 (238)
379 COG3490 Uncharacterized protei 96.1 0.56 1.2E-05 37.6 17.9 205 36-271 69-315 (366)
380 PF14870 PSII_BNR: Photosynthe 96.0 0.35 7.5E-06 39.8 13.1 155 34-221 144-301 (302)
381 TIGR02604 Piru_Ver_Nterm putat 95.9 0.5 1.1E-05 40.4 14.3 60 154-215 126-204 (367)
382 KOG4499 Ca2+-binding protein R 95.9 0.41 8.9E-06 37.2 12.0 108 38-169 161-271 (310)
383 PF12234 Rav1p_C: RAVE protein 95.8 0.51 1.1E-05 42.8 14.4 111 95-224 32-156 (631)
384 cd00216 PQQ_DH Dehydrogenases 95.8 1.3 2.8E-05 39.5 19.9 67 161-227 225-322 (488)
385 PHA03098 kelch-like protein; P 95.7 0.89 1.9E-05 41.1 15.9 67 163-231 389-471 (534)
386 PF00780 CNH: CNH domain; Int 95.7 0.93 2E-05 36.9 22.1 204 36-271 37-260 (275)
387 COG3391 Uncharacterized conser 95.7 1.2 2.7E-05 38.2 25.4 154 94-270 75-243 (381)
388 PF02897 Peptidase_S9_N: Proly 95.6 1.4 3E-05 38.4 22.2 160 36-227 125-312 (414)
389 PF05096 Glu_cyclase_2: Glutam 95.6 0.91 2E-05 36.3 16.2 154 36-227 46-206 (264)
390 COG3490 Uncharacterized protei 95.5 1 2.2E-05 36.2 13.4 108 95-221 70-186 (366)
391 PF07569 Hira: TUP1-like enhan 95.4 0.14 3E-06 40.1 8.4 78 42-123 18-97 (219)
392 PHA02713 hypothetical protein; 95.3 1.5 3.2E-05 39.9 15.9 136 163-300 351-523 (557)
393 KOG1916 Nuclear protein, conta 95.2 0.042 9.2E-07 50.5 5.6 186 2-225 152-375 (1283)
394 PF10313 DUF2415: Uncharacteri 95.2 0.098 2.1E-06 28.6 4.9 32 35-66 1-34 (43)
395 COG3204 Uncharacterized protei 95.2 1.4 3E-05 35.6 16.3 170 33-226 84-265 (316)
396 PF15390 DUF4613: Domain of un 95.1 1.4 2.9E-05 39.2 13.8 123 92-227 56-189 (671)
397 PF02897 Peptidase_S9_N: Proly 94.7 2.6 5.6E-05 36.7 22.8 182 4-227 151-361 (414)
398 KOG3630 Nuclear pore complex, 94.7 0.7 1.5E-05 44.1 11.9 145 92-246 100-254 (1405)
399 PF05694 SBP56: 56kDa selenium 94.7 2.5 5.4E-05 36.4 15.7 195 2-226 97-344 (461)
400 PF12234 Rav1p_C: RAVE protein 94.7 1.8 3.8E-05 39.5 14.1 119 37-181 32-155 (631)
401 PF14583 Pectate_lyase22: Olig 94.6 2.5 5.4E-05 35.9 18.5 197 39-269 40-275 (386)
402 KOG1916 Nuclear protein, conta 94.6 0.039 8.4E-07 50.7 3.7 165 31-226 129-325 (1283)
403 PF14655 RAB3GAP2_N: Rab3 GTPa 94.5 1 2.3E-05 38.8 11.9 87 89-192 304-408 (415)
404 KOG4460 Nuclear pore complex, 94.4 3.2 6.9E-05 36.5 14.2 73 154-227 106-201 (741)
405 PF07569 Hira: TUP1-like enhan 94.4 0.39 8.5E-06 37.6 8.5 69 161-230 19-101 (219)
406 PF10168 Nup88: Nuclear pore c 94.3 1.9 4.2E-05 40.2 14.0 71 154-225 87-180 (717)
407 KOG2377 Uncharacterized conser 94.3 1.5 3.3E-05 37.7 12.0 160 37-227 25-188 (657)
408 PRK13684 Ycf48-like protein; P 94.3 2.8 6.1E-05 35.3 16.5 154 34-223 172-330 (334)
409 COG5167 VID27 Protein involved 94.1 1.3 2.8E-05 38.6 11.4 158 32-224 464-632 (776)
410 COG3204 Uncharacterized protei 94.1 2.7 5.7E-05 34.1 18.3 119 89-225 82-211 (316)
411 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.8 5 0.00011 36.2 22.8 26 162-187 310-338 (527)
412 PHA03098 kelch-like protein; P 93.8 1.8 3.9E-05 39.2 12.8 65 163-229 437-516 (534)
413 TIGR02604 Piru_Ver_Nterm putat 93.8 3.8 8.2E-05 35.1 14.0 103 94-213 15-142 (367)
414 PF10647 Gmad1: Lipoprotein Lp 93.6 3.2 6.9E-05 33.4 21.0 163 36-230 25-203 (253)
415 PF14583 Pectate_lyase22: Olig 93.6 4.2 9E-05 34.6 19.1 174 4-222 169-379 (386)
416 KOG1897 Damage-specific DNA bi 93.4 6.6 0.00014 37.4 15.2 151 94-266 776-942 (1096)
417 PF10313 DUF2415: Uncharacteri 93.3 0.37 8E-06 26.4 4.6 31 195-225 1-34 (43)
418 PHA02790 Kelch-like protein; P 93.2 6 0.00013 35.3 15.7 63 163-230 362-429 (480)
419 KOG3630 Nuclear pore complex, 92.9 1 2.2E-05 43.1 9.6 151 35-210 101-259 (1405)
420 PF14655 RAB3GAP2_N: Rab3 GTPa 92.7 2.2 4.8E-05 36.8 10.8 78 194-271 307-403 (415)
421 PF05694 SBP56: 56kDa selenium 92.6 6.3 0.00014 34.1 17.5 205 48-274 88-350 (461)
422 PF08728 CRT10: CRT10; InterP 92.6 8.7 0.00019 35.7 17.4 126 94-223 102-245 (717)
423 PF05096 Glu_cyclase_2: Glutam 92.4 4.9 0.00011 32.3 17.9 161 4-212 69-249 (264)
424 PF13449 Phytase-like: Esteras 92.2 6.2 0.00014 33.1 17.5 167 34-211 19-231 (326)
425 KOG2247 WD40 repeat-containing 91.8 0.03 6.4E-07 47.9 -1.2 147 38-223 38-187 (615)
426 PF12657 TFIIIC_delta: Transcr 91.4 2 4.2E-05 32.3 8.3 32 195-226 86-123 (173)
427 KOG1897 Damage-specific DNA bi 91.2 14 0.00031 35.3 19.9 178 4-223 751-941 (1096)
428 PF07995 GSDH: Glucose / Sorbo 90.9 8.9 0.00019 32.3 15.2 110 95-217 4-136 (331)
429 PHA02790 Kelch-like protein; P 90.3 12 0.00026 33.4 13.5 60 163-227 407-473 (480)
430 PF11635 Med16: Mediator compl 90.3 17 0.00037 34.6 18.8 126 93-219 181-345 (753)
431 KOG1898 Splicing factor 3b, su 90.3 18 0.0004 34.9 17.2 106 98-224 939-1048(1205)
432 PF10168 Nup88: Nuclear pore c 89.5 19 0.00041 33.9 16.6 89 93-183 85-180 (717)
433 COG4257 Vgb Streptogramin lyas 89.5 9.9 0.00021 30.7 17.8 197 35-268 62-264 (353)
434 PF14870 PSII_BNR: Photosynthe 89.2 11 0.00025 31.1 20.1 103 153-258 146-254 (302)
435 PF15390 DUF4613: Domain of un 89.2 17 0.00036 32.8 17.9 71 38-123 116-188 (671)
436 TIGR02276 beta_rpt_yvtn 40-res 88.9 2.3 5.1E-05 22.8 6.1 40 162-202 1-41 (42)
437 PLN00033 photosystem II stabil 88.9 15 0.00032 31.9 17.4 112 92-221 280-396 (398)
438 COG5290 IkappaB kinase complex 88.7 8.4 0.00018 35.9 10.9 69 156-227 251-327 (1243)
439 KOG2280 Vacuolar assembly/sort 88.4 21 0.00046 33.1 16.2 30 94-123 85-114 (829)
440 PF10647 Gmad1: Lipoprotein Lp 88.1 12 0.00026 30.1 19.6 108 94-223 25-143 (253)
441 COG5167 VID27 Protein involved 87.9 2.3 5E-05 37.2 6.8 61 48-123 574-634 (776)
442 KOG2377 Uncharacterized conser 87.6 16 0.00034 31.9 11.3 106 33-169 65-170 (657)
443 COG3823 Glutamine cyclotransfe 87.2 12 0.00026 28.9 11.9 57 154-212 178-247 (262)
444 TIGR03074 PQQ_membr_DH membran 86.7 17 0.00037 34.5 12.3 29 163-191 259-287 (764)
445 KOG1900 Nuclear pore complex, 86.6 27 0.00058 34.7 13.4 159 2-183 98-273 (1311)
446 KOG1900 Nuclear pore complex, 86.4 23 0.00051 35.1 12.9 71 151-225 178-273 (1311)
447 KOG2280 Vacuolar assembly/sort 86.4 28 0.00061 32.4 14.9 73 154-229 219-292 (829)
448 PRK10115 protease 2; Provision 86.2 30 0.00065 32.6 22.7 195 35-266 127-344 (686)
449 PF11715 Nup160: Nucleoporin N 85.9 3.6 7.7E-05 37.4 7.5 67 162-228 156-252 (547)
450 PF14761 HPS3_N: Hermansky-Pud 85.6 15 0.00032 28.5 16.0 48 49-110 30-77 (215)
451 PF14761 HPS3_N: Hermansky-Pud 84.2 18 0.00038 28.1 12.0 103 105-226 30-165 (215)
452 PF11715 Nup160: Nucleoporin N 83.9 16 0.00034 33.3 10.7 28 163-190 229-256 (547)
453 COG4257 Vgb Streptogramin lyas 83.8 22 0.00047 28.9 18.8 116 92-227 147-265 (353)
454 PRK13684 Ycf48-like protein; P 83.7 26 0.00055 29.6 19.7 114 92-226 172-289 (334)
455 PF10214 Rrn6: RNA polymerase 83.4 43 0.00094 32.0 18.9 127 35-183 146-277 (765)
456 KOG4460 Nuclear pore complex, 83.3 24 0.00052 31.4 10.6 88 35-123 104-200 (741)
457 PF07676 PD40: WD40-like Beta 82.9 5.2 0.00011 21.1 5.4 29 193-221 7-38 (39)
458 PF12768 Rax2: Cortical protei 82.7 16 0.00034 29.9 9.1 62 172-233 14-81 (281)
459 PRK10115 protease 2; Provision 82.5 44 0.00096 31.5 17.9 109 93-223 127-254 (686)
460 PF12341 DUF3639: Protein of u 82.2 4.4 9.5E-05 19.7 3.5 25 36-63 3-27 (27)
461 PF03022 MRJP: Major royal jel 82.2 27 0.00058 28.8 18.5 197 4-212 35-253 (287)
462 PF08728 CRT10: CRT10; InterP 81.9 46 0.00099 31.2 18.3 162 104-266 49-246 (717)
463 smart00564 PQQ beta-propeller 81.6 5 0.00011 20.1 4.0 25 165-189 7-31 (33)
464 TIGR03075 PQQ_enz_alc_DH PQQ-d 81.0 43 0.00094 30.4 19.8 118 48-190 70-197 (527)
465 TIGR03118 PEPCTERM_chp_1 conse 79.6 34 0.00073 28.3 21.1 187 35-232 77-288 (336)
466 PF14781 BBS2_N: Ciliary BBSom 79.4 20 0.00043 25.5 14.3 120 39-187 3-130 (136)
467 KOG2247 WD40 repeat-containing 79.2 0.24 5.2E-06 42.7 -2.4 133 91-248 33-171 (615)
468 COG5276 Uncharacterized conser 78.9 35 0.00076 28.1 16.9 115 154-274 89-207 (370)
469 KOG1983 Tomosyn and related SN 78.9 49 0.0011 32.7 12.3 36 32-68 33-68 (993)
470 PF12657 TFIIIC_delta: Transcr 78.8 20 0.00042 26.9 8.0 30 93-122 86-122 (173)
471 COG4590 ABC-type uncharacteriz 78.3 23 0.0005 30.9 8.8 190 93-302 221-420 (733)
472 PF12768 Rax2: Cortical protei 78.2 36 0.00079 27.9 12.4 52 57-123 16-74 (281)
473 PLN00033 photosystem II stabil 76.5 51 0.0011 28.7 16.8 111 95-227 241-359 (398)
474 PF01011 PQQ: PQQ enzyme repea 76.1 9.5 0.00021 20.1 4.5 27 166-192 2-28 (38)
475 PF07676 PD40: WD40-like Beta 75.4 9.9 0.00021 20.0 4.8 29 34-62 8-38 (39)
476 COG3823 Glutamine cyclotransfe 75.2 37 0.0008 26.4 9.0 104 172-278 109-216 (262)
477 KOG1896 mRNA cleavage and poly 73.4 1E+02 0.0022 30.8 18.2 153 48-226 1047-1215(1366)
478 PF14727 PHTB1_N: PTHB1 N-term 73.3 64 0.0014 28.3 14.7 58 166-226 302-362 (418)
479 TIGR03606 non_repeat_PQQ dehyd 73.1 67 0.0015 28.5 13.5 31 93-123 30-61 (454)
480 PF07995 GSDH: Glucose / Sorbo 71.3 62 0.0013 27.3 17.0 66 154-219 255-330 (331)
481 COG4590 ABC-type uncharacteriz 69.9 45 0.00098 29.2 8.6 163 34-227 220-389 (733)
482 PLN02193 nitrile-specifier pro 69.5 83 0.0018 28.1 16.0 23 48-70 230-257 (470)
483 TIGR03074 PQQ_membr_DH membran 69.3 1.1E+02 0.0024 29.4 20.8 25 48-72 195-219 (764)
484 PF03088 Str_synth: Strictosid 69.0 20 0.00043 23.5 5.1 42 170-212 33-74 (89)
485 PF01436 NHL: NHL repeat; Int 68.3 12 0.00027 18.1 3.6 24 197-220 4-27 (28)
486 PF10214 Rrn6: RNA polymerase 68.0 1.2E+02 0.0026 29.2 21.9 136 91-228 78-236 (765)
487 PF11635 Med16: Mediator compl 67.2 34 0.00075 32.6 8.3 82 34-116 259-345 (753)
488 PF14779 BBS1: Ciliary BBSome 66.7 45 0.00097 26.9 7.6 75 33-119 175-256 (257)
489 KOG1898 Splicing factor 3b, su 66.7 1.4E+02 0.003 29.5 15.6 123 173-301 911-1051(1205)
490 PLN02153 epithiospecifier prot 66.5 79 0.0017 26.7 17.3 23 48-70 87-114 (341)
491 TIGR03606 non_repeat_PQQ dehyd 64.0 1.1E+02 0.0023 27.3 13.1 60 36-104 31-90 (454)
492 PF03088 Str_synth: Strictosid 63.3 37 0.00081 22.2 5.5 39 2-53 36-74 (89)
493 PF13570 PQQ_3: PQQ-like domai 61.4 18 0.0004 19.1 3.4 21 163-183 20-40 (40)
494 PLN02193 nitrile-specifier pro 60.4 1.3E+02 0.0028 27.0 16.4 64 163-228 278-355 (470)
495 PF01731 Arylesterase: Arylest 60.4 44 0.00096 21.7 6.3 50 173-225 35-85 (86)
496 KOG3522 Predicted guanine nucl 60.4 96 0.0021 29.6 9.3 66 154-224 629-697 (925)
497 COG1520 FOG: WD40-like repeat 59.7 1.1E+02 0.0024 26.1 10.2 104 103-227 68-174 (370)
498 PF07250 Glyoxal_oxid_N: Glyox 59.2 92 0.002 25.0 12.7 32 159-192 176-207 (243)
499 PF14269 Arylsulfotran_2: Aryl 58.9 1.1E+02 0.0023 25.5 12.8 70 154-224 146-220 (299)
500 PF13449 Phytase-like: Esteras 58.1 1.1E+02 0.0025 25.7 12.7 116 92-213 19-165 (326)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-44 Score=279.32 Aligned_cols=254 Identities=21% Similarity=0.374 Sum_probs=216.4
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+-+||+||+.+..+ .++++ ||..-|.|++|+|++ ..||+|+.||.|++||..+++
T Consensus 136 D~TvR~WD~~TeTp--~~t~K---------gH~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~------------- 190 (480)
T KOG0271|consen 136 DTTVRLWDLDTETP--LFTCK---------GHKNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQ------------- 190 (480)
T ss_pred CceEEeeccCCCCc--ceeec---------CCccEEEEEEECCCc-chhhccccCCeEEEecCCCCC-------------
Confidence 35799999988665 55543 689999999999999 999999999999999999998
Q ss_pred cccccccCCCcccEEEEEEccC-----CCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee
Q 021160 82 FCPRHLIGKNNIHITGLAYSNT-----SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK 155 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~-----~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 155 (316)
+....+.+|...|++++|.|- .++|+++ .||.|+|||+..+ ..+..+.+|+.. |+
T Consensus 191 -~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~----------------~~~~~lsgHT~~--VT 251 (480)
T KOG0271|consen 191 -QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG----------------TCVRTLSGHTAS--VT 251 (480)
T ss_pred -cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc----------------eEEEEeccCccc--eE
Confidence 444444899999999999873 4588885 6999999999988 788899999977 99
Q ss_pred eEEEecCCCcEEEEeccCCeEEEEeccCCeeEE-----------------------------------------------
Q 021160 156 GVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR----------------------------------------------- 188 (316)
Q Consensus 156 ~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~----------------------------------------------- 188 (316)
|+.| . ...+|++|+.|++|++|+...|++++
T Consensus 252 Cvrw-G-G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~ 329 (480)
T KOG0271|consen 252 CVRW-G-GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE 329 (480)
T ss_pred EEEE-c-CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence 9998 4 34588899999999999876654332
Q ss_pred --------------------------------EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCc
Q 021160 189 --------------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNA 235 (316)
Q Consensus 189 --------------------------------~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~ 235 (316)
.+.+|...|+.+.|+||++++|++|.|+.|++|+-++++ +.++++|.
T Consensus 330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc
Confidence 445677789999999999999999999999999999998 89999999
Q ss_pred ccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeEEeecccccccccCCCCeEEEEeccCCCCCCCCCCcceee
Q 021160 236 EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQREC 313 (316)
Q Consensus 236 ~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 313 (316)
..+++++ |+.|.+++++++.|.++++|++++++. ..++++++|+ ||.+|.+.+..--..+|-+++-
T Consensus 410 ~~VYqva-wsaDsRLlVS~SkDsTLKvw~V~tkKl---------~~DLpGh~DE--Vf~vDwspDG~rV~sggkdkv~ 475 (480)
T KOG0271|consen 410 AAVYQVA-WSADSRLLVSGSKDSTLKVWDVRTKKL---------KQDLPGHADE--VFAVDWSPDGQRVASGGKDKVL 475 (480)
T ss_pred ceeEEEE-eccCccEEEEcCCCceEEEEEeeeeee---------cccCCCCCce--EEEEEecCCCceeecCCCceEE
Confidence 9999998 899999999999999999999998855 5889999999 9999998776655555555543
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-40 Score=263.08 Aligned_cols=255 Identities=14% Similarity=0.196 Sum_probs=220.0
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC-CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~-~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
+|.++||...+......+. ||...|.++.|+|. ....+|+|+.||++++|++.+..
T Consensus 196 sG~~kvW~~~~~~~~~~l~-----------gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~------------ 252 (459)
T KOG0272|consen 196 SGLVKVWSVPQCNLLQTLR-----------GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET------------ 252 (459)
T ss_pred CCceeEeecCCcceeEEEe-----------ccccceeeEEEccCCCccceeeeccCCceeeeccCCCc------------
Confidence 6899999987765544444 58999999999998 34799999999999999998654
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
.+..+ .+|...|..++|+|+|++|+++ -|.+-++||++++ ..+....||..+ |.+++|
T Consensus 253 --~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk----------------~ElL~QEGHs~~--v~~iaf 311 (459)
T KOG0272|consen 253 --PLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK----------------SELLLQEGHSKG--VFSIAF 311 (459)
T ss_pred --chhhh-hcchhhheeeeecCCCceeeecccccchhhcccccc----------------hhhHhhcccccc--cceeEe
Confidence 22222 8999999999999999999995 6999999999998 677778999966 999999
Q ss_pred ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccc
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI 238 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~ 238 (316)
.++|.++++|+.|..-++||+++|+++..+.+|...|.+++|+|+|..|||||.|++++|||++... +.+++.|.+-|
T Consensus 312 -~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlV 390 (459)
T KOG0272|consen 312 -QPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLV 390 (459)
T ss_pred -cCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999887 88999999988
Q ss_pred eeeeecCC-CCceeEEecCCCeEEEEEecccCcceeEEeecccccccccCCCCeEEEEeccCCCCCCCCCCcceee
Q 021160 239 MKANKQGR-EDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQREC 313 (316)
Q Consensus 239 ~~~~~~~~-~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 313 (316)
..+. +.+ .+.+++|++.|+++++|...+.+. ...+++|++. |+.+|.+.+...-...+-+|-|
T Consensus 391 S~Vk-~~p~~g~fL~TasyD~t~kiWs~~~~~~---------~ksLaGHe~k--V~s~Dis~d~~~i~t~s~DRT~ 454 (459)
T KOG0272|consen 391 SQVK-YSPQEGYFLVTASYDNTVKIWSTRTWSP---------LKSLAGHEGK--VISLDISPDSQAIATSSFDRTI 454 (459)
T ss_pred hheE-ecccCCeEEEEcccCcceeeecCCCccc---------chhhcCCccc--eEEEEeccCCceEEEeccCcee
Confidence 6666 555 899999999999999999777655 4678888887 9999988766544444555544
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5e-39 Score=253.95 Aligned_cols=217 Identities=16% Similarity=0.248 Sum_probs=198.0
Q ss_pred CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
.+|+|++|++.+..+...+. ||...|..++|+|+| ++|++++.|.+-++||+++++
T Consensus 239 ~Dgtvklw~~~~e~~l~~l~-----------gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~------------ 294 (459)
T KOG0272|consen 239 ADGTVKLWKLSQETPLQDLE-----------GHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKS------------ 294 (459)
T ss_pred cCCceeeeccCCCcchhhhh-----------cchhhheeeeecCCC-ceeeecccccchhhcccccch------------
Confidence 37999999998876544443 588899999999999 999999999999999999886
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
......+|...|.+++|.++|.++++| .|..-+|||++++ ..+..+.+|..+ |.+|+|
T Consensus 295 ---ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg----------------r~im~L~gH~k~--I~~V~f 353 (459)
T KOG0272|consen 295 ---ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG----------------RCIMFLAGHIKE--ILSVAF 353 (459)
T ss_pred ---hhHhhcccccccceeEecCCCceeeccCccchhheeecccC----------------cEEEEecccccc--eeeEeE
Confidence 223338999999999999999999995 6999999999999 789999999966 999999
Q ss_pred ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcC-CCCeEEEEeCCCcEEEecCCCCC-CCCCCCCccc
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEK 237 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~ 237 (316)
+|+|..|++|+.|++++|||++..+.+.++++|..-|+.+.|+| .|.+|+|++.|++++||...+.. +..+.+|...
T Consensus 354 -sPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~k 432 (459)
T KOG0272|consen 354 -SPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGK 432 (459)
T ss_pred -CCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccc
Confidence 99999999999999999999999999999999999999999999 67779999999999999999887 8899999999
Q ss_pred ceeeeecCCCCceeEEecCCCeEEEEE
Q 021160 238 IMKANKQGREDHSRITLTPDVIMHVLR 264 (316)
Q Consensus 238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~ 264 (316)
|+++. .++++..+++++.|.++++|.
T Consensus 433 V~s~D-is~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 433 VISLD-ISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEE-eccCCceEEEeccCceeeecc
Confidence 99988 889999999999999999995
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2e-37 Score=262.31 Aligned_cols=205 Identities=17% Similarity=0.281 Sum_probs=188.6
Q ss_pred CCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160 30 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 109 (316)
Q Consensus 30 ~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 109 (316)
..||.++|..+.|+|+. ++|++++.|+++|+|.+.+.. +.... .+|..+|+.+.|+|-|-++|+
T Consensus 447 L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s--------------~~V~y-~GH~~PVwdV~F~P~GyYFat 510 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWS--------------CLVIY-KGHLAPVWDVQFAPRGYYFAT 510 (707)
T ss_pred eecCCCceeeeeecccc-cceeeccCCcceeeeecccce--------------eEEEe-cCCCcceeeEEecCCceEEEe
Confidence 35999999999999999 999999999999999999886 33333 799999999999999999999
Q ss_pred e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE
Q 021160 110 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 188 (316)
Q Consensus 110 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~ 188 (316)
+ .|++.++|..... ++.+.+.+|.+. +.|+.| +|+..|+++||.|.+|++||+.+|..++
T Consensus 511 as~D~tArLWs~d~~----------------~PlRifaghlsD--V~cv~F-HPNs~Y~aTGSsD~tVRlWDv~~G~~VR 571 (707)
T KOG0263|consen 511 ASHDQTARLWSTDHN----------------KPLRIFAGHLSD--VDCVSF-HPNSNYVATGSSDRTVRLWDVSTGNSVR 571 (707)
T ss_pred cCCCceeeeeecccC----------------Cchhhhcccccc--cceEEE-CCcccccccCCCCceEEEEEcCCCcEEE
Confidence 5 6999999999887 799999999977 999999 9999999999999999999999999999
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160 189 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 189 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~ 267 (316)
.|.||.++|.+++|+|+|++|++|+.|+.|++||+..+. +..+.+|...+.++. ++.++..+++++.|..|++||+..
T Consensus 572 iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sls-FS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 572 IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLS-FSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEE-EecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999999999999999999999987 788899977666665 899999999999999999999876
Q ss_pred cCc
Q 021160 268 RQT 270 (316)
Q Consensus 268 ~~~ 270 (316)
...
T Consensus 651 ~~~ 653 (707)
T KOG0263|consen 651 VIE 653 (707)
T ss_pred hcc
Confidence 533
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-36 Score=234.23 Aligned_cols=216 Identities=18% Similarity=0.270 Sum_probs=191.0
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+|.|+|||+....+...+. ||..+|+|+.|--+| ++++|+.|++|++|+...+.
T Consensus 226 Dg~vrIWd~~~~~~~~~ls-----------gHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~------------- 279 (480)
T KOG0271|consen 226 DGSVRIWDTKLGTCVRTLS-----------GHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGK------------- 279 (480)
T ss_pred CCCEEEEEccCceEEEEec-----------cCccceEEEEEcCCc--eEEecCCCceEEEEEccchh-------------
Confidence 7899999998877644443 589999999998665 99999999999999999887
Q ss_pred cccccccCCCcccEEEEEEc-----------cCC-------------------------CeEEEe-cCCcEEEEEcCCCC
Q 021160 82 FCPRHLIGKNNIHITGLAYS-----------NTS-------------------------ELLISY-NDELVYLFEKNMGL 124 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~-----------~~~-------------------------~~l~s~-~d~~i~iwd~~~~~ 124 (316)
+.+.+ .+|...|+.++.+ |.+ +.|+++ .|.++.+|+.....
T Consensus 280 -~~r~l-kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k 357 (480)
T KOG0271|consen 280 -LCREL-KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK 357 (480)
T ss_pred -HHHhh-cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc
Confidence 44444 8899999988877 222 348886 68999999976542
Q ss_pred CCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcC
Q 021160 125 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP 204 (316)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p 204 (316)
+++..+.+|... |+.+.| +||+.++++++.|..|++|+.++|+.+..|.+|-..|..++|+.
T Consensus 358 ---------------kpi~rmtgHq~l--Vn~V~f-SPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa 419 (480)
T KOG0271|consen 358 ---------------KPITRMTGHQAL--VNHVSF-SPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA 419 (480)
T ss_pred ---------------cchhhhhchhhh--eeeEEE-CCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc
Confidence 577889999976 999999 99999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160 205 HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 264 (316)
Q Consensus 205 ~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~ 264 (316)
|.++|++||.|.++++|++++++ ...+++|.++++... |++|+..+++++.|..+++|.
T Consensus 420 DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vD-wspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 420 DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVD-WSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEE-ecCCCceeecCCCceEEEeec
Confidence 99999999999999999999998 678999999998888 899999999999999999995
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-35 Score=219.04 Aligned_cols=225 Identities=15% Similarity=0.189 Sum_probs=182.1
Q ss_pred CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
++..+.+|++...... .....-++.||+..|..+..++++ ++.++++.|+++++||+.+++
T Consensus 36 rDk~ii~W~L~~dd~~------~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~------------ 96 (315)
T KOG0279|consen 36 RDKTIIVWKLTSDDIK------YGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGE------------ 96 (315)
T ss_pred cceEEEEEEeccCccc------cCceeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecCCc------------
Confidence 4678899999876321 111122345799999999999999 999999999999999999886
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
+...+ .+|...|.+++|+++.+.++++ .|.+|++|+.... +..++..+.....|.|+.|
T Consensus 97 --~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-----------------ck~t~~~~~~~~WVscvrf 156 (315)
T KOG0279|consen 97 --STRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-----------------CKYTIHEDSHREWVSCVRF 156 (315)
T ss_pred --EEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeeccc-----------------EEEEEecCCCcCcEEEEEE
Confidence 33333 7999999999999999999996 6999999999775 4444444432244999999
Q ss_pred ecCC--CcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcc
Q 021160 160 FGPN--DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAE 236 (316)
Q Consensus 160 ~~~~--~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~ 236 (316)
+|+ ..+|++++.|++|++||+++.+....+.+|++.++.++++|||..+++|+.||.+.+||++.++ +..+ ++..
T Consensus 157 -sP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~ 234 (315)
T KOG0279|consen 157 -SPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFD 234 (315)
T ss_pred -cCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCC
Confidence 887 7899999999999999999999999999999999999999999999999999999999999988 4444 4666
Q ss_pred cceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
.+..++ ++|+...++.+ .+..|++|++..+
T Consensus 235 ~v~sl~-fspnrywL~~a-t~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 235 IVNSLC-FSPNRYWLCAA-TATSIKIWDLESK 264 (315)
T ss_pred eEeeEE-ecCCceeEeec-cCCceEEEeccch
Confidence 665665 67755455444 4555999998875
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-34 Score=214.15 Aligned_cols=239 Identities=15% Similarity=0.208 Sum_probs=200.6
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 110 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 110 (316)
.||++.|++++..+.++..+++++.|..+.+|++..... +...+++.+ .+|...|..+..+++|++++++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~----~~G~~~r~~------~GHsH~v~dv~~s~dg~~alS~ 81 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI----KYGVPVRRL------TGHSHFVSDVVLSSDGNFALSA 81 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc----ccCceeeee------eccceEecceEEccCCceEEec
Confidence 479999999999999889999999999999999975531 112233333 7899999999999999988885
Q ss_pred -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160 111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189 (316)
Q Consensus 111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~ 189 (316)
.|+++++||+.++ +..+.|.+|... |.+++| +++.+.|++|+.|.+|++|+.. +.+..+
T Consensus 82 swD~~lrlWDl~~g----------------~~t~~f~GH~~d--Vlsva~-s~dn~qivSGSrDkTiklwnt~-g~ck~t 141 (315)
T KOG0279|consen 82 SWDGTLRLWDLATG----------------ESTRRFVGHTKD--VLSVAF-STDNRQIVSGSRDKTIKLWNTL-GVCKYT 141 (315)
T ss_pred cccceEEEEEecCC----------------cEEEEEEecCCc--eEEEEe-cCCCceeecCCCcceeeeeeec-ccEEEE
Confidence 7999999999998 788999999966 999999 9999999999999999999998 455555
Q ss_pred eecC--ccceEEEEEcCC--CCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160 190 MVGD--RHVVNQLEPHPH--IPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 264 (316)
Q Consensus 190 ~~~~--~~~v~~~~~~p~--~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~ 264 (316)
+..+ .+.|.++.|+|+ .++|++++.|++|++||+++.+ ...+.+|...+..+. .++|+.++++++.||.+++||
T Consensus 142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~-vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVT-VSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEE-ECCCCCEEecCCCCceEEEEE
Confidence 5433 789999999998 7889999999999999999998 566778887775555 999999999999999999999
Q ss_pred ecccCccee--------E-EeecccccccccCCCCeEEEEeccCCC
Q 021160 265 LQRRQTLAY--------R-ERRYNAADFESDEEEGETYLLGFSDSD 301 (316)
Q Consensus 265 ~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 301 (316)
+..++.+-+ . .|+|....+...-+.+ |.+|++.++.
T Consensus 221 L~~~k~lysl~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~ 265 (315)
T KOG0279|consen 221 LNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKA 265 (315)
T ss_pred ccCCceeEeccCCCeEeeEEecCCceeEeeccCCc-eEEEeccchh
Confidence 998755322 1 6888888877654432 8999988764
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.4e-34 Score=215.03 Aligned_cols=247 Identities=16% Similarity=0.213 Sum_probs=202.7
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+|.+.|||..+......+.+. ..-|..++|+|.+ +++|+|+.|....||++.+.+... .
T Consensus 76 DGklIvWDs~TtnK~haipl~-----------s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d~~g---------~ 134 (343)
T KOG0286|consen 76 DGKLIVWDSFTTNKVHAIPLP-----------SSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRDAEG---------N 134 (343)
T ss_pred CCeEEEEEcccccceeEEecC-----------ceeEEEEEECCCC-CeEEecCcCceeEEEecccccccc---------c
Confidence 689999999887766666654 5579999999999 999999999999999998653100 0
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEec
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG 161 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 161 (316)
........+|.+.+.|..|.+|+.+|.++.|.++.+||++++ +.++.|.+|... |.++++ +
T Consensus 135 ~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g----------------~~~~~f~GH~gD--V~slsl-~ 195 (343)
T KOG0286|consen 135 VRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG----------------QQTQVFHGHTGD--VMSLSL-S 195 (343)
T ss_pred ceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc----------------eEEEEecCCccc--EEEEec-C
Confidence 012222389999999999999888887789999999999999 789999999977 999999 8
Q ss_pred C-CCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCc---cc
Q 021160 162 P-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNA---EK 237 (316)
Q Consensus 162 ~-~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~ 237 (316)
| +++.+++|+.|+..++||++.+.+.+.|.+|.+.|++++|.|+|.-|++|+.|++.|+||++..+...+..+. .+
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred CCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCC
Confidence 8 9999999999999999999999999999999999999999999999999999999999999998733333233 33
Q ss_pred ceeeeecCCCCceeEEecCCCeEEEEEecccCcceeEEeecccccccccCCCCeEEEEeccCC
Q 021160 238 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDS 300 (316)
Q Consensus 238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 300 (316)
+..++ ++..+++++++..|..+.+||.-.++.. ..+.+|+ +||-.+.++++
T Consensus 276 itSv~-FS~SGRlLfagy~d~~c~vWDtlk~e~v---------g~L~GHe--NRvScl~~s~D 326 (343)
T KOG0286|consen 276 ITSVA-FSKSGRLLFAGYDDFTCNVWDTLKGERV---------GVLAGHE--NRVSCLGVSPD 326 (343)
T ss_pred ceeEE-EcccccEEEeeecCCceeEeeccccceE---------EEeeccC--CeeEEEEECCC
Confidence 44444 8889999999999999999998766443 3334333 33766666543
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.8e-34 Score=209.85 Aligned_cols=223 Identities=14% Similarity=0.267 Sum_probs=186.2
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 83 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~ 83 (316)
.||+||++++++.++.+.. ||...|+++.|..+| +..++|++||+++|||++... +
T Consensus 62 hvRlyD~~S~np~Pv~t~e---------~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~--------------~ 117 (311)
T KOG0315|consen 62 HVRLYDLNSNNPNPVATFE---------GHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLS--------------C 117 (311)
T ss_pred eeEEEEccCCCCCceeEEe---------ccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcc--------------c
Confidence 6899999999887777664 588999999999999 999999999999999999765 3
Q ss_pred cccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC
Q 021160 84 PRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 162 (316)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 162 (316)
.+.+ .|..+|+++..+|+...|+++ .+|.|++||+... .....+..... ..|.++.. .|
T Consensus 118 qR~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~----------------~c~~~liPe~~-~~i~sl~v-~~ 177 (311)
T KOG0315|consen 118 QRNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN----------------SCTHELIPEDD-TSIQSLTV-MP 177 (311)
T ss_pred chhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEccCC----------------ccccccCCCCC-cceeeEEE-cC
Confidence 3322 456899999999987766665 7999999999875 23333322221 34899998 89
Q ss_pred CCcEEEEeccCCeEEEEeccCC------eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC-C-CCCCCCC
Q 021160 163 NDEYVMSGSDCGHLFIWKKKGG------KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-D-FPPLPDN 234 (316)
Q Consensus 163 ~~~~l~~~~~dg~v~~wd~~~~------~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~-~-~~~~~~~ 234 (316)
+|.+++.+...|..++|++-.. +++..++.|.+-+..+.+||++++||++|.|.+++||+.... + ...+.+|
T Consensus 178 dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh 257 (311)
T KOG0315|consen 178 DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH 257 (311)
T ss_pred CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC
Confidence 9999999999999999998654 355677889999999999999999999999999999999887 3 4567788
Q ss_pred cccceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160 235 AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~ 271 (316)
...+..++ ++.|+++++++++|+..++|++..++..
T Consensus 258 ~rWvWdc~-FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 258 QRWVWDCA-FSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred CceEEeee-eccCccEEEecCCCCceeecccccCcee
Confidence 88887777 8999999999999999999999887543
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.3e-33 Score=223.32 Aligned_cols=217 Identities=18% Similarity=0.271 Sum_probs=187.0
Q ss_pred CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 111 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 111 (316)
-+..|++++|+.+| .+||+|+.||.+++|+..... ...+ ..|.++|.++.|+..|.+|+++ .
T Consensus 234 ~nkdVT~L~Wn~~G-~~LatG~~~G~~riw~~~G~l---------------~~tl-~~HkgPI~slKWnk~G~yilS~~v 296 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDG-TLLATGSEDGEARIWNKDGNL---------------ISTL-GQHKGPIFSLKWNKKGTYILSGGV 296 (524)
T ss_pred ccCCcceEEecCCC-CeEEEeecCcEEEEEecCchh---------------hhhh-hccCCceEEEEEcCCCCEEEeccC
Confidence 35689999999999 899999999999999987542 3333 7899999999999999988885 6
Q ss_pred CCcEEEEEcCCCC-------------------------CCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcE
Q 021160 112 DELVYLFEKNMGL-------------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 166 (316)
Q Consensus 112 d~~i~iwd~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 166 (316)
|+++.+||..++. ......+.+..+....++.++.+|.++ |.++.| .|.+.+
T Consensus 297 D~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~--V~alk~-n~tg~L 373 (524)
T KOG0273|consen 297 DGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE--VNALKW-NPTGSL 373 (524)
T ss_pred CccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCc--eEEEEE-CCCCce
Confidence 9999999997664 111122333334455688899999977 999999 999999
Q ss_pred EEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCC---------eEEEEeCCCcEEEecCCCCC-CCCCCCCcc
Q 021160 167 VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP---------MFATCGIEKTVKLWAPMPTD-FPPLPDNAE 236 (316)
Q Consensus 167 l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~---------~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~ 236 (316)
|+++++|++++||....+.....+.+|...|..+.|+|+++ .+++++.|++|++||+..+. +..|..|..
T Consensus 374 LaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~ 453 (524)
T KOG0273|consen 374 LASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE 453 (524)
T ss_pred EEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC
Confidence 99999999999999999999999999999999999999653 58999999999999999887 888989999
Q ss_pred cceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160 237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 270 (316)
Q Consensus 237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~ 270 (316)
+++.++ ++++++++++|+.|+.|++|+.++++.
T Consensus 454 pVysva-fS~~g~ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 454 PVYSVA-FSPNGRYLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred ceEEEE-ecCCCcEEEecCCCCeeEeccccchhe
Confidence 999888 899999999999999999999888744
No 11
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.7e-34 Score=220.34 Aligned_cols=251 Identities=17% Similarity=0.230 Sum_probs=202.0
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+.+|+|||.++..+.+.+. ||.+.|.|+.|.. +.+++|++|.+|++||+++++
T Consensus 216 DnTikiWD~n~~~c~~~L~-----------GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge------------- 268 (499)
T KOG0281|consen 216 DNTIKIWDKNSLECLKILT-----------GHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGE------------- 268 (499)
T ss_pred cCceEEeccccHHHHHhhh-----------cCCCcEEeeeccc---eEEEecCCCceEEEEeccCCc-------------
Confidence 5689999998877766655 4899999999975 689999999999999999997
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
+.+++ -+|...|..+.|+. .++++ +.|.++.+||+.... .....+.+.||... |+.+.|
T Consensus 269 -~l~tl-ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps-------------~it~rrVLvGHrAa--VNvVdf- 328 (499)
T KOG0281|consen 269 -PLNTL-IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT-------------DITLRRVLVGHRAA--VNVVDF- 328 (499)
T ss_pred -hhhHH-hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCch-------------HHHHHHHHhhhhhh--eeeecc-
Confidence 44444 68899999999974 36666 579999999998762 11345678899977 999988
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM 239 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~ 239 (316)
+.++|++++.|.+|++|++.+++.++++.+|...|.|+++ .++++++|+.|.+|++||+..+. +..+.+|.+-+.
T Consensus 329 --d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvR 404 (499)
T KOG0281|consen 329 --DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 404 (499)
T ss_pred --ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhh
Confidence 4669999999999999999999999999999999999988 68899999999999999999998 777888877663
Q ss_pred eeeecCCCCceeEEecCCCeEEEEEecccCcc-----------------eeEEeecccccccccCCCCeEEEEeccCCCC
Q 021160 240 KANKQGREDHSRITLTPDVIMHVLRLQRRQTL-----------------AYRERRYNAADFESDEEEGETYLLGFSDSDA 302 (316)
Q Consensus 240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 302 (316)
.. ..+...+++|..||.+++||+.....+ ..+..+-+...+.+...+.++++|||.++-.
T Consensus 405 ci---RFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 405 CI---RFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred he---eecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCc
Confidence 33 235679999999999999999875433 1122233445555555556699999998876
Q ss_pred CCCC
Q 021160 303 SSEG 306 (316)
Q Consensus 303 ~~~~ 306 (316)
.+.+
T Consensus 482 ~~~~ 485 (499)
T KOG0281|consen 482 SAAE 485 (499)
T ss_pred cccc
Confidence 5433
No 12
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-31 Score=201.24 Aligned_cols=238 Identities=18% Similarity=0.272 Sum_probs=196.0
Q ss_pred CCCccceEEEEECCC-CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160 31 PMNSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 109 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~-~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 109 (316)
+||++.+..++|+|- | .+||+++.|..|++|+...+. ...|...+-.+|+..|.+++|+|.|++|++
T Consensus 11 ~gh~~r~W~~awhp~~g-~ilAscg~Dk~vriw~~~~~~-----------s~~ck~vld~~hkrsVRsvAwsp~g~~La~ 78 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKG-VILASCGTDKAVRIWSTSSGD-----------SWTCKTVLDDGHKRSVRSVAWSPHGRYLAS 78 (312)
T ss_pred cCCCCcEEEEEeccCCc-eEEEeecCCceEEEEecCCCC-----------cEEEEEeccccchheeeeeeecCCCcEEEE
Confidence 478999999999997 5 799999999999999998532 111555566789999999999999999999
Q ss_pred e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC---e
Q 021160 110 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG---K 185 (316)
Q Consensus 110 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~---~ 185 (316)
+ -|.++.||.-..+ .++.+..+.||.++ |.+++| +++|++||+++.|+.|.||.+..+ +
T Consensus 79 aSFD~t~~Iw~k~~~--------------efecv~~lEGHEnE--VK~Vaw-s~sG~~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDG--------------EFECVATLEGHENE--VKCVAW-SASGNYLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred eeccceEEEeecCCC--------------ceeEEeeeeccccc--eeEEEE-cCCCCEEEEeeCCCeEEEEEecCCCcEE
Confidence 6 5999999987654 23577889999988 999999 999999999999999999998743 5
Q ss_pred eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC-CCC---CCCCCCCcccceeeeecCCCCceeEEecCCCeEE
Q 021160 186 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-PTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMH 261 (316)
Q Consensus 186 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~ 261 (316)
++..+..|...|..+.|||...+|+++|.|.+|++|.-. ... .+++.+|...+..++ +.+.+..+++++.|++++
T Consensus 142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~-F~~~G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLA-FDNIGSRLVSCSDDGTVS 220 (312)
T ss_pred EEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEE-ecCCCceEEEecCCcceE
Confidence 678889999999999999999999999999999999877 332 778888988887777 788889999999999999
Q ss_pred EEEeccc-----CcceeE-EeecccccccccCCCCeEEEEeccCC
Q 021160 262 VLRLQRR-----QTLAYR-ERRYNAADFESDEEEGETYLLGFSDS 300 (316)
Q Consensus 262 ~w~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 300 (316)
+|..... ....|. .+. ...+++...++.+.++.-+++
T Consensus 221 Iw~~~~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 221 IWRLYTDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS 263 (312)
T ss_pred eeeeccCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCC
Confidence 9995432 223332 222 456777777777777765543
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-31 Score=202.45 Aligned_cols=241 Identities=14% Similarity=0.142 Sum_probs=198.5
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 110 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 110 (316)
+||...|.++.|+++. +.+++++.||.+.|||.-+.. .+..+ .--...|...+|+|.|++++++
T Consensus 52 kGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~Ttn---------K~hai------pl~s~WVMtCA~sPSg~~VAcG 115 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTN---------KVHAI------PLPSSWVMTCAYSPSGNFVACG 115 (343)
T ss_pred cccccceeeeEecCCc-CeEEeeccCCeEEEEEccccc---------ceeEE------ecCceeEEEEEECCCCCeEEec
Confidence 5899999999999998 999999999999999987664 11111 2235689999999999999995
Q ss_pred -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160 111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189 (316)
Q Consensus 111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~ 189 (316)
.|....||++.+..... ..+..+.+.+|+.. +.++.| .+ ...|++++.|.+..+||+++|+.+..
T Consensus 116 GLdN~Csiy~ls~~d~~g----------~~~v~r~l~gHtgy--lScC~f-~d-D~~ilT~SGD~TCalWDie~g~~~~~ 181 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEG----------NVRVSRELAGHTGY--LSCCRF-LD-DNHILTGSGDMTCALWDIETGQQTQV 181 (343)
T ss_pred CcCceeEEEecccccccc----------cceeeeeecCccce--eEEEEE-cC-CCceEecCCCceEEEEEcccceEEEE
Confidence 69999999998541110 11345678899965 999998 44 66788999999999999999999999
Q ss_pred eecCccceEEEEEcC-CCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160 190 MVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 190 ~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~ 267 (316)
|.+|.+.|.+++++| +++.+++|+-|+..++||++.+. .+++.+|...|-.+. +.|++.-+++++.|++.+++|++.
T Consensus 182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~-ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVR-FFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEE-EccCCCeeeecCCCceeEEEeecC
Confidence 999999999999999 89999999999999999999987 889999999985555 889999999999999999999998
Q ss_pred cCcceeE------------EeecccccccccCCCCeEEEEeccCCCC
Q 021160 268 RQTLAYR------------ERRYNAADFESDEEEGETYLLGFSDSDA 302 (316)
Q Consensus 268 ~~~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 302 (316)
.+.+..+ .|+..+..+-.+-++..+.+||.-.++.
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~ 307 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER 307 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccce
Confidence 6555443 3555566666666777788887655554
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.2e-31 Score=196.59 Aligned_cols=255 Identities=15% Similarity=0.258 Sum_probs=211.6
Q ss_pred CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
++-+||+|...++.+...+.-. .+.|+.+.+.|++ ..||+++. -.||+||+++++ +.|+.
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~-----------dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~n-------p~Pv~ 77 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHP-----------DSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSNN-------PNPVA 77 (311)
T ss_pred CcceeeeeehhcCeEEEEEecC-----------ccceeeEEEcCCc-chhhhccC-CeeEEEEccCCC-------CCcee
Confidence 4678999999999987766543 4579999999998 78888776 679999999887 55666
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
+| .+|...|+++.|..+|+.++++ .||+++|||++.. ...+.+. +..+ |+++..
T Consensus 78 t~------e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~----------------~~qR~~~-~~sp--Vn~vvl 132 (311)
T KOG0315|consen 78 TF------EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL----------------SCQRNYQ-HNSP--VNTVVL 132 (311)
T ss_pred EE------eccCCceEEEEEeecCeEEEecCCCceEEEEeccCc----------------ccchhcc-CCCC--cceEEe
Confidence 66 8899999999999999998885 7999999999986 3444444 5555 999998
Q ss_pred ecCCCcEEEEeccCCeEEEEeccCCeeEEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-------CCCC
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-------FPPL 231 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-------~~~~ 231 (316)
+|+..-|++|..+|.|++||+....+...+. .....|.++...|+|.+++.+...|..++|++-... +..+
T Consensus 133 -hpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~ 211 (311)
T KOG0315|consen 133 -HPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF 211 (311)
T ss_pred -cCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe
Confidence 8999999999999999999999876665553 344689999999999999999999999999986543 3456
Q ss_pred CCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc----------CcceeE-EeecccccccccCCCCeEEEEeccCC
Q 021160 232 PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR----------QTLAYR-ERRYNAADFESDEEEGETYLLGFSDS 300 (316)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 300 (316)
+.|...++.+. .++++.+++++++|.++++|+...- +...+- .|+.++.++...+.++.+.+|+++.+
T Consensus 212 ~ah~~~il~C~-lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 212 QAHNGHILRCL-LSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred ecccceEEEEE-ECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC
Confidence 67777777776 8999999999999999999997653 223333 68999999999999999999999888
Q ss_pred CC
Q 021160 301 DA 302 (316)
Q Consensus 301 ~~ 302 (316)
++
T Consensus 291 k~ 292 (311)
T KOG0315|consen 291 KE 292 (311)
T ss_pred ce
Confidence 75
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.4e-33 Score=218.33 Aligned_cols=251 Identities=11% Similarity=0.146 Sum_probs=207.7
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.|.+.+|+..+-.-+-+.. .|..+|.++.|++++ .++++|..+|.|++|+..-..
T Consensus 117 SGEFtLWNg~~fnFEtilQ-----------aHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmnn------------- 171 (464)
T KOG0284|consen 117 SGEFTLWNGTSFNFETILQ-----------AHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMNN------------- 171 (464)
T ss_pred cccEEEecCceeeHHHHhh-----------hhcccceeEEEccCC-CEEEEcCCCceEEecccchhh-------------
Confidence 4667788774433322222 388999999999999 899999999999999987543
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
.+.+...|...|++++|+|....+++ +.|++|+|||.... +.-..+.+|.-. |.+++|
T Consensus 172 --Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~----------------kee~vL~GHgwd--VksvdW- 230 (464)
T KOG0284|consen 172 --VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP----------------KEERVLRGHGWD--VKSVDW- 230 (464)
T ss_pred --hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC----------------chhheeccCCCC--cceecc-
Confidence 22332456699999999997766666 57999999999887 677788999877 999999
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM 239 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~ 239 (316)
+|...+|++|+.|..|++||.++++++.++.+|+..|..+.|+|++++|+++|.|..++++|+++.+ +..+++|.+.+.
T Consensus 231 HP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~ 310 (464)
T KOG0284|consen 231 HPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVT 310 (464)
T ss_pred CCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhe
Confidence 8999999999999999999999999999999999999999999999999999999999999999655 889999999998
Q ss_pred eeeecCCCCceeEEecCCCeEEEEEecccC----------cceeE-EeecccccccccCCCCeEEEEecc
Q 021160 240 KANKQGREDHSRITLTPDVIMHVLRLQRRQ----------TLAYR-ERRYNAADFESDEEEGETYLLGFS 298 (316)
Q Consensus 240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~ 298 (316)
...|.+....++.+++.||.+..|.+...+ ..++. .+-|-+.-+++++.+..+..|--.
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 888666688899999999999999987322 22233 456667777778888778777543
No 16
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-32 Score=225.71 Aligned_cols=223 Identities=15% Similarity=0.161 Sum_probs=196.8
Q ss_pred CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
+.|.|+||+..+..-.+.+... ..+|.+..|-+.. +.+++|+.|..|++|+..+++
T Consensus 33 ynG~V~IWnyetqtmVksfeV~-----------~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt~e------------ 88 (794)
T KOG0276|consen 33 YNGDVQIWNYETQTMVKSFEVS-----------EVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNTGE------------ 88 (794)
T ss_pred ecCeeEEEecccceeeeeeeec-----------ccchhhheeeecc-ceEEEecCCceEEEEecccce------------
Confidence 3589999999987777777664 4579999999988 899999999999999999986
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
....+ .+|.+.|.+++.+|...++.++ .|-+|++||.+..- .+.++|.||... |.+++|
T Consensus 89 --kV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w---------------a~~qtfeGH~Hy--VMqv~f 148 (794)
T KOG0276|consen 89 --KVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW---------------ACEQTFEGHEHY--VMQVAF 148 (794)
T ss_pred --eeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCce---------------eeeeEEcCcceE--EEEEEe
Confidence 33333 8999999999999999877775 68899999998873 678999999966 999999
Q ss_pred ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCC--CeEEEEeCCCcEEEecCCCCC-CCCCCCCcc
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI--PMFATCGIEKTVKLWAPMPTD-FPPLPDNAE 236 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~ 236 (316)
++.|.+.+++++-|++|++|.+.+..+..++.+|...|+++.+-|.+ ++|++|+.|.+|+|||.+++. ++++.+|..
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~ 228 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN 228 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc
Confidence 77789999999999999999999999999999999999999998854 789999999999999999987 889999999
Q ss_pred cceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
.+ +.+.+.++-.++++++.||++|+|+..+-
T Consensus 229 Nv-s~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 229 NV-SFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred cc-eEEEecCCCcEEEEecCCccEEEecCcce
Confidence 87 55558888899999999999999987653
No 17
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-32 Score=232.83 Aligned_cols=226 Identities=17% Similarity=0.276 Sum_probs=196.7
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.|.|++||.+.......|. .|.++|..++|||++ .+|++|+.|..|++|+..+.+
T Consensus 30 sG~IQlWDYRM~tli~rFd-----------eHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~rr------------- 84 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGTLIDRFD-----------EHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKTRR------------- 84 (1202)
T ss_pred CceeeeehhhhhhHHhhhh-----------ccCCccceeeecCCC-CeEEecCCccEEEEEecccce-------------
Confidence 5899999999877654443 389999999999999 699999999999999999888
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
|..++ .+|-+.|..+.|++.-..++++ .|.+|+||+..++ +++..+.||... |.|..|
T Consensus 85 -clftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr----------------~~iavltGHnHY--VMcAqF- 143 (1202)
T KOG0292|consen 85 -CLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR----------------KCIAVLTGHNHY--VMCAQF- 143 (1202)
T ss_pred -ehhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEeccCC----------------ceEEEEecCceE--EEeecc-
Confidence 66666 8999999999999999888885 7999999999998 899999999966 999999
Q ss_pred cCCCcEEEEeccCCeEEEEeccC--------C---------------------eeEEEeecCccceEEEEEcCCCCeEEE
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKG--------G---------------------KLVRLMVGDRHVVNQLEPHPHIPMFAT 211 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~--------~---------------------~~~~~~~~~~~~v~~~~~~p~~~~l~s 211 (316)
+|....++++|-|.+|++||+.. + -..+.+.+|...|+-++|+|..+.|++
T Consensus 144 hptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS 223 (1202)
T KOG0292|consen 144 HPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS 223 (1202)
T ss_pred CCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEe
Confidence 89999999999999999999641 1 012356789999999999999999999
Q ss_pred EeCCCcEEEecCCCCC---CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE
Q 021160 212 CGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR 274 (316)
Q Consensus 212 ~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~ 274 (316)
|+.|+.|++|.....+ .-+.++|...+.++. +.+..+++++.+.|+++++||+.++.....+
T Consensus 224 G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvl-fhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 224 GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVL-FHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred cCCcceeeEEEeccccceeehhhhcccCCcceEE-ecCccceeEecCCCccEEEEecccccceeee
Confidence 9999999999987765 667889999986666 7888889999999999999999887555444
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.6e-32 Score=231.47 Aligned_cols=248 Identities=16% Similarity=0.193 Sum_probs=210.0
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCC------C-----------CCCceecccccccCCCcccEE
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS------S-----------DTPVDTFCPRHLIGKNNIHIT 96 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~------~-----------~~~~~~~~~~~~~~~~~~~i~ 96 (316)
...++|..|++++ ..+|.|..|..|++|.+...++.+.-. . ..+......+. .-+|.++|.
T Consensus 378 ~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~-L~GH~GPVy 455 (707)
T KOG0263|consen 378 YQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT-LYGHSGPVY 455 (707)
T ss_pred CCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE-eecCCCcee
Confidence 3578999999999 799999999999999998543221100 0 00011111122 368999999
Q ss_pred EEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCe
Q 021160 97 GLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH 175 (316)
Q Consensus 97 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 175 (316)
...|+|+.++|+++ .|+++++|.+.+. ..+-.++||..+ |+++.| +|-|-++|+++.|++
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~----------------s~~V~y~GH~~P--VwdV~F-~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTW----------------SCLVIYKGHLAP--VWDVQF-APRGYYFATASHDQT 516 (707)
T ss_pred eeeecccccceeeccCCcceeeeecccc----------------eeEEEecCCCcc--eeeEEe-cCCceEEEecCCCce
Confidence 99999999999996 6999999999988 678889999977 999999 899999999999999
Q ss_pred EEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEe
Q 021160 176 LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITL 254 (316)
Q Consensus 176 v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~ 254 (316)
.++|.....++++.+.+|-+.|.|+.|||+..++++||.|.+||+||+.++. ++.+.+|..++..++ +++.+++++++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~-~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALA-FSPCGRYLASG 595 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEE-EcCCCceEeec
Confidence 9999999999999999999999999999999999999999999999999887 778889999997777 89999999999
Q ss_pred cCCCeEEEEEecccC---------cceeE-EeecccccccccCCCCeEEEEeccCCCCC
Q 021160 255 TPDVIMHVLRLQRRQ---------TLAYR-ERRYNAADFESDEEEGETYLLGFSDSDAS 303 (316)
Q Consensus 255 ~~d~~~~~w~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 303 (316)
+.|+.|++||+..+. ..++. .++.++..++++..+..|.+||+..-...
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 999999999998742 22333 89999999999999999999998765443
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-31 Score=203.72 Aligned_cols=234 Identities=17% Similarity=0.225 Sum_probs=199.1
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS- 109 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s- 109 (316)
.||++.|+.+.|+|+| .+||+|+.|..|.+|++.... .-.....+|.+.|..+.|.+++..+++
T Consensus 44 ~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdc--------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~ 108 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDC--------------ENFWVLKGHSGAVMELHGMRDGSHILSC 108 (338)
T ss_pred CCCcceEEEEEECCCC-CeEeecCCcceEEEEeccccc--------------cceeeeccccceeEeeeeccCCCEEEEe
Confidence 5899999999999998 899999999999999976432 122233799999999999999998887
Q ss_pred ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160 110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189 (316)
Q Consensus 110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~ 189 (316)
+.|++|+.||.+++ +..+.+++|..- +.++.-......++.+++.|+++++||+++...+++
T Consensus 109 gtDk~v~~wD~~tG----------------~~~rk~k~h~~~--vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 109 GTDKTVRGWDAETG----------------KRIRKHKGHTSF--VNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT 170 (338)
T ss_pred cCCceEEEEecccc----------------eeeehhccccce--eeecCccccCCeEEEecCCCceEEEEeecccchhhc
Confidence 57999999999999 788999999865 777764223455778899999999999999988888
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
+.. +-.++++.|..++..+.+|+-|+.|++||++... ...+.+|.+.|..+. .++++.++++-+-|.++++||++.-
T Consensus 171 ~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~ls-ls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 171 FEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLS-LSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred ccc-ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEE-eccCCCccccccccceEEEEEeccc
Confidence 753 4578999999999999999999999999999887 888999999997777 8899999999999999999998742
Q ss_pred ------------------CcceeEEeecccccccccCCCCeEEEEeccC
Q 021160 269 ------------------QTLAYRERRYNAADFESDEEEGETYLLGFSD 299 (316)
Q Consensus 269 ------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 299 (316)
..+....++|+...+..+..+.-+|+||...
T Consensus 249 ~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 249 APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence 2223346889999999999998999999765
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-31 Score=208.49 Aligned_cols=235 Identities=17% Similarity=0.284 Sum_probs=197.1
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS- 109 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s- 109 (316)
+||.+-|.|+++.|-+ .+|++|+.|++++|||+.++++ ..+ ..+|...|..+++++-..++++
T Consensus 148 ~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~L--------------klt-ltGhi~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQL--------------KLT-LTGHIETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred hhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeE--------------EEe-ecchhheeeeeeecccCceEEEe
Confidence 5899999999999987 8999999999999999999973 223 3889999999999998888888
Q ss_pred ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160 110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189 (316)
Q Consensus 110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~ 189 (316)
+.|++|+.||++.. +.++.+.||-.. |.+++. .|.-..|++|+.|.++++||+++...+..
T Consensus 212 gedk~VKCwDLe~n----------------kvIR~YhGHlS~--V~~L~l-hPTldvl~t~grDst~RvWDiRtr~~V~~ 272 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYN----------------KVIRHYHGHLSG--VYCLDL-HPTLDVLVTGGRDSTIRVWDIRTRASVHV 272 (460)
T ss_pred cCCCeeEEEechhh----------------hhHHHhccccce--eEEEec-cccceeEEecCCcceEEEeeecccceEEE
Confidence 57999999999988 799999999977 999999 88899999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
+.+|..+|.++.+.|..+.+++||.|++|++||++.++ ..++..|...+..++ ..|....+++++.|. ++-|++..+
T Consensus 273 l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~-lhP~e~~fASas~dn-ik~w~~p~g 350 (460)
T KOG0285|consen 273 LSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALC-LHPKENLFASASPDN-IKQWKLPEG 350 (460)
T ss_pred ecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEe-cCCchhhhhccCCcc-ceeccCCcc
Confidence 99999999999999999999999999999999999888 677776766665555 666666777777764 577887765
Q ss_pred Cccee---------EEeecccccccccCCCCeEEEEeccCCCC
Q 021160 269 QTLAY---------RERRYNAADFESDEEEGETYLLGFSDSDA 302 (316)
Q Consensus 269 ~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 302 (316)
..... .........+.++.+.|.++.||..++-.
T Consensus 351 ~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 351 EFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred chhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcc
Confidence 33322 11222334455677888888898887753
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-30 Score=225.08 Aligned_cols=236 Identities=18% Similarity=0.318 Sum_probs=202.0
Q ss_pred CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 111 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 111 (316)
|...|.++.|+|+| ..+++++.++.+++|+....+. .....+ .+|...|.+++|+|++++++++ .
T Consensus 158 ~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~------------~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~ 223 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKS------------NLLREL-SGHTRGVSDVAFSPDGSYLLSGSD 223 (456)
T ss_pred ccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccc------------hhhccc-cccccceeeeEECCCCcEEEEecC
Confidence 47789999999999 7899999999999999965541 012222 7899999999999999998885 7
Q ss_pred CCcEEEEEc-CCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160 112 DELVYLFEK-NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 190 (316)
Q Consensus 112 d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~ 190 (316)
|++|++||+ ..+ ..++++.+|... |++++| +|+++++++|+.|++|++||+++++++..+
T Consensus 224 D~tiriwd~~~~~----------------~~~~~l~gH~~~--v~~~~f-~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l 284 (456)
T KOG0266|consen 224 DKTLRIWDLKDDG----------------RNLKTLKGHSTY--VTSVAF-SPDGNLLVSGSDDGTVRIWDVRTGECVRKL 284 (456)
T ss_pred CceEEEeeccCCC----------------eEEEEecCCCCc--eEEEEe-cCCCCEEEEecCCCcEEEEeccCCeEEEee
Confidence 999999999 443 578999999977 999999 899999999999999999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC---CCCCCCCccc-ceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160 191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEK-IMKANKQGREDHSRITLTPDVIMHVLRLQ 266 (316)
Q Consensus 191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~d~~~~~w~~~ 266 (316)
.+|.+.|++++|++++.+|++++.|+.|++||+.++. ...+.++... .....++++++.+++++..|+.+++|++.
T Consensus 285 ~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 285 KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 9999999999999999999999999999999999988 3466666666 56777799999999999999999999998
Q ss_pred ccCcc-----------eeE--EeecccccccccCCCCeEEEEeccCCC
Q 021160 267 RRQTL-----------AYR--ERRYNAADFESDEEEGETYLLGFSDSD 301 (316)
Q Consensus 267 ~~~~~-----------~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~ 301 (316)
..... .+. ...+.+..+.++..++.|++|+.+.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 365 SGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred CCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 64221 111 345577888889999999999998754
No 22
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.7e-31 Score=203.95 Aligned_cols=248 Identities=16% Similarity=0.238 Sum_probs=205.9
Q ss_pred CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
++++++|||+.+++.+..+. ||...|..+++++.. .|+++++.|++|+.||++..+
T Consensus 171 ~DrtikIwDlatg~Lkltlt-----------Ghi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~nk------------ 226 (460)
T KOG0285|consen 171 ADRTIKIWDLATGQLKLTLT-----------GHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEYNK------------ 226 (460)
T ss_pred CCceeEEEEcccCeEEEeec-----------chhheeeeeeecccC-ceEEEecCCCeeEEEechhhh------------
Confidence 57899999999987754443 478899999999988 699999999999999999887
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
.++.. .+|-..|.|++.+|.-..|+++ .|.++++||+++. ..+..+.||.+. |.++.+
T Consensus 227 --vIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr----------------~~V~~l~GH~~~--V~~V~~ 285 (460)
T KOG0285|consen 227 --VIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR----------------ASVHVLSGHTNP--VASVMC 285 (460)
T ss_pred --hHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeeccc----------------ceEEEecCCCCc--ceeEEe
Confidence 34444 7899999999999998888885 7999999999998 789999999977 999998
Q ss_pred ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccc
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI 238 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~ 238 (316)
.|....+++|+.|++|++||+..|+....+..|...|.+++.+|....||+++.| .|+-|++..+. +..+.+|...+
T Consensus 286 -~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~ii 363 (460)
T KOG0285|consen 286 -QPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAII 363 (460)
T ss_pred -ecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccccee
Confidence 6777789999999999999999999999999999999999999999999999976 68999999887 77788787766
Q ss_pred eeeeecCCCCceeEEecCCCeEEEEEecccCcce-----------------eE-EeecccccccccCCCCeEEEEec
Q 021160 239 MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA-----------------YR-ERRYNAADFESDEEEGETYLLGF 297 (316)
Q Consensus 239 ~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~-----------------~~-~~~~~~~~~~~~~~~~~v~~~~~ 297 (316)
..+. ..++..+++|+..|.+.+||-+.+..-. +. ++...+..+.+++.+..|-+|.-
T Consensus 364 ntl~--~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 364 NTLS--VNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred eeee--eccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 5554 2345689999999999999987753221 11 34445555566666666666543
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.5e-31 Score=220.93 Aligned_cols=252 Identities=15% Similarity=0.262 Sum_probs=201.3
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.|++.||+.++....-.. -||...+++++++|+| +++|+|+.||+|+|||..++-
T Consensus 329 lgQLlVweWqsEsYVlKQ-----------QgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~Sgf------------- 383 (893)
T KOG0291|consen 329 LGQLLVWEWQSESYVLKQ-----------QGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGF------------- 383 (893)
T ss_pred cceEEEEEeeccceeeec-----------cccccceeeEEECCCC-cEEEeccCCCcEEEEeccCce-------------
Confidence 478999998775442222 2588999999999999 899999999999999999875
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
|..++ ..|+..|+.+.|+..|+.+++ +.||+|+.||+... ...++|..... ....|++.
T Consensus 384 -C~vTF-teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY----------------rNfRTft~P~p-~Qfscvav- 443 (893)
T KOG0291|consen 384 -CFVTF-TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY----------------RNFRTFTSPEP-IQFSCVAV- 443 (893)
T ss_pred -EEEEe-ccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc----------------ceeeeecCCCc-eeeeEEEE-
Confidence 66666 889999999999999997777 57999999999776 56666664432 23678887
Q ss_pred cCCCcEEEEeccCC-eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC--CCCCCCCCccc
Q 021160 161 GPNDEYVMSGSDCG-HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT--DFPPLPDNAEK 237 (316)
Q Consensus 161 ~~~~~~l~~~~~dg-~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~ 237 (316)
.|.|..+.+|+.|. .|++|++++|+++-.+.+|.++|.+++|+|.+..|+++|.|++||+||+-.. ...++. +...
T Consensus 444 D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sd 522 (893)
T KOG0291|consen 444 DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSD 522 (893)
T ss_pred cCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccc
Confidence 89999999998766 5999999999999999999999999999999999999999999999998665 344444 4455
Q ss_pred ceeeeecCCCCceeEEecCCCeEEEEEecccCcc------------------------------eeEEeecccccccccC
Q 021160 238 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL------------------------------AYRERRYNAADFESDE 287 (316)
Q Consensus 238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~------------------------------~~~~~~~~~~~~~~~~ 287 (316)
++... +.|++..++..+-||.|.+||.+...+. ...+.++++..+..++
T Consensus 523 vl~vs-frPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG 601 (893)
T KOG0291|consen 523 VLAVS-FRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGG 601 (893)
T ss_pred eeEEE-EcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecC
Confidence 65666 8899999999999999999998653222 1114566666666666
Q ss_pred CCCeEEEEeccCC
Q 021160 288 EEGETYLLGFSDS 300 (316)
Q Consensus 288 ~~~~v~~~~~~~~ 300 (316)
....+.+++...+
T Consensus 602 ~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 602 ESNSICIYDVPEG 614 (893)
T ss_pred CcccEEEEECchh
Confidence 6666666665443
No 24
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-31 Score=225.72 Aligned_cols=262 Identities=15% Similarity=0.209 Sum_probs=205.7
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF 82 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~ 82 (316)
+.+|++++.+..+. ++ .||...|.++....+| -+|++|+.|.++++|.++.+... ..
T Consensus 346 ~~lr~y~~~~~~c~-ii-----------~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~----------~~ 402 (775)
T KOG0319|consen 346 PELRLYTLPTSYCQ-II-----------PGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSK----------SL 402 (775)
T ss_pred CceEEEecCCCceE-EE-----------eCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcch----------hh
Confidence 45677766665553 22 3699999999965666 79999999999999999544311 11
Q ss_pred ccccccCCCcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 83 CPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
+. ....+|...|.+++++..+. +|++ +.|.++++|++....... . ............|. +.|+++++
T Consensus 403 ~~-a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~-~------~~~~~~~~t~~aHd--KdIN~Vai- 471 (775)
T KOG0319|consen 403 CV-AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA-F------PIVLTCRYTERAHD--KDINCVAI- 471 (775)
T ss_pred hh-hhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc-c------cceehhhHHHHhhc--ccccceEe-
Confidence 22 23378999999999987774 8888 579999999997621000 0 00001112334566 44999999
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM 239 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~ 239 (316)
+|+..+++|||.|++.++|+++.......+.+|+..|.++.|+|..+.++|+|.|++|+||.+.+.. +.++.+|...+.
T Consensus 472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVl 551 (775)
T KOG0319|consen 472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVL 551 (775)
T ss_pred cCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeE
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 899999999997
Q ss_pred eeeecCCCCceeEEecCCCeEEEEEeccc---------CcceeE-EeecccccccccCCCCeEEEEeccC
Q 021160 240 KANKQGREDHSRITLTPDVIMHVLRLQRR---------QTLAYR-ERRYNAADFESDEEEGETYLLGFSD 299 (316)
Q Consensus 240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~ 299 (316)
... +-.++..+++++.||.+++|++++. +-.++. .-.+....+.+++.+|++.+|.-..
T Consensus 552 ra~-F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 552 RAS-FIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eee-eeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 776 7788899999999999999999874 333444 4555666778888899998885433
No 25
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8e-32 Score=212.51 Aligned_cols=245 Identities=16% Similarity=0.246 Sum_probs=199.6
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 112 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 112 (316)
+.+|..+.|.|+| +.|++|+..|.+.+|+..+- ....+...|..+|.++.|++++.+++++ .+
T Consensus 96 kc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~f---------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~g 159 (464)
T KOG0284|consen 96 KCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSF---------------NFETILQAHDSPVRTMKWSHNGTWMISGDKG 159 (464)
T ss_pred ccceeeEEEcCCC-ceeEeecccccEEEecCcee---------------eHHHHhhhhcccceeEEEccCCCEEEEcCCC
Confidence 4589999999999 99999999999999998533 3455568999999999999999999997 69
Q ss_pred CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc-CCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160 113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 191 (316)
Q Consensus 113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~ 191 (316)
|.|++|+.... .++.+..|. .. |++++| +|+...++++++||+|+|||....+....+.
T Consensus 160 G~iKyWqpnmn-----------------nVk~~~ahh~ea--IRdlaf-SpnDskF~t~SdDg~ikiWdf~~~kee~vL~ 219 (464)
T KOG0284|consen 160 GMIKYWQPNMN-----------------NVKIIQAHHAEA--IRDLAF-SPNDSKFLTCSDDGTIKIWDFRMPKEERVLR 219 (464)
T ss_pred ceEEecccchh-----------------hhHHhhHhhhhh--hheecc-CCCCceeEEecCCCeEEEEeccCCchhheec
Confidence 99999998765 556666665 44 999999 8999999999999999999999888888899
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc-C
Q 021160 192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR-Q 269 (316)
Q Consensus 192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~-~ 269 (316)
+|.-.|.+++|||....+|++|.|..|++||.+++. +.++.+|...|+.+. |.+++++|++++.|..++++|+++- +
T Consensus 220 GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~-f~~n~N~Llt~skD~~~kv~DiR~mkE 298 (464)
T KOG0284|consen 220 GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK-FNPNGNWLLTGSKDQSCKVFDIRTMKE 298 (464)
T ss_pred cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE-EcCCCCeeEEccCCceEEEEehhHhHH
Confidence 999999999999999999999999999999999987 889999999998887 7888899999999999999999832 1
Q ss_pred --------cceeE-Eeeccc-ccccccCCCCeEEEEeccCCCCCCCCCCcceeeec
Q 021160 270 --------TLAYR-ERRYNA-ADFESDEEEGETYLLGFSDSDASSEGGGNQRECII 315 (316)
Q Consensus 270 --------~~~~~-~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 315 (316)
+-+.. ++.|.. ..+.++..+|.|+.+.+.-.+.-.+-......|+|
T Consensus 299 l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iw 354 (464)
T KOG0284|consen 299 LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIW 354 (464)
T ss_pred HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCccccccee
Confidence 11111 344433 44556677888888877633332233334444544
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9e-32 Score=209.35 Aligned_cols=223 Identities=17% Similarity=0.216 Sum_probs=199.1
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
++++++||..+++....++ ||...|.+++|+..| .++++++.|-.+++||..+...
T Consensus 129 d~tikv~D~~tg~~e~~Lr-----------GHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~~~~------------ 184 (406)
T KOG0295|consen 129 DATIKVFDTETGELERSLR-----------GHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDTFFR------------ 184 (406)
T ss_pred CceEEEEEccchhhhhhhh-----------ccccceeEEEEecCc-cEEEecCCccchhheeHHHHHH------------
Confidence 5789999999888755544 578899999999999 9999999999999999986320
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
|.+.+ .+|...|.++.|-|.|.+++++ .|.+|+.|++.++ ..+++|.+|... +..+..
T Consensus 185 -c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg----------------~cv~t~~~h~ew--vr~v~v- 243 (406)
T KOG0295|consen 185 -CIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG----------------YCVKTFPGHSEW--VRMVRV- 243 (406)
T ss_pred -HHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecccc----------------eeEEeccCchHh--EEEEEe-
Confidence 44444 7899999999999999988885 7999999999999 799999999976 999998
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCC---------------CCeEEEEeCCCcEEEecCCC
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH---------------IPMFATCGIEKTVKLWAPMP 225 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~---------------~~~l~s~~~d~~i~iwd~~~ 225 (316)
..||.++++++.|.++++|-+.++++...+..|..+|-+++|.|. ++++++++.|++|++||+.+
T Consensus 244 ~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t 323 (406)
T KOG0295|consen 244 NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST 323 (406)
T ss_pred cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence 899999999999999999999999999999999999999999873 24799999999999999999
Q ss_pred CC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160 226 TD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 270 (316)
Q Consensus 226 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~ 270 (316)
+. +.++.+|.+.+...+ +++.|.+++++..|+++++||++.++-
T Consensus 324 g~cL~tL~ghdnwVr~~a-f~p~Gkyi~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 324 GMCLFTLVGHDNWVRGVA-FSPGGKYILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred CeEEEEEecccceeeeeE-EcCCCeEEEEEecCCcEEEEEecccee
Confidence 88 889999999998887 899999999999999999999998754
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-30 Score=224.54 Aligned_cols=226 Identities=18% Similarity=0.332 Sum_probs=187.5
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCC-cccCCCCCCCCce
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC-HWYSPISSDTPVD 80 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~-~~~~~~~~~~~~~ 80 (316)
++.+++|++...+. ... .. ..+|...|++++|+|++ .++++++.|++|++||+... .
T Consensus 180 ~~~i~~~~~~~~~~-~~~--~~------l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~------------ 237 (456)
T KOG0266|consen 180 DGLIRIWKLEGIKS-NLL--RE------LSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGR------------ 237 (456)
T ss_pred CCcEEEeecccccc-hhh--cc------ccccccceeeeEECCCC-cEEEEecCCceEEEeeccCCCe------------
Confidence 56788888854442 011 11 13589999999999999 89999999999999999433 3
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
+.+.+ .+|...|++++|+|++++++++ .|++|++||++++ ++...+.+|... |.+++|
T Consensus 238 --~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~----------------~~~~~l~~hs~~--is~~~f 296 (456)
T KOG0266|consen 238 --NLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG----------------ECVRKLKGHSDG--ISGLAF 296 (456)
T ss_pred --EEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC----------------eEEEeeeccCCc--eEEEEE
Confidence 44444 7999999999999999988886 7999999999998 799999999977 999999
Q ss_pred ecCCCcEEEEeccCCeEEEEeccCCe--eEEEeecCccc--eEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCC
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKGGK--LVRLMVGDRHV--VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDN 234 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~--v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~ 234 (316)
++++.+|++++.|+.|++||+.+++ +...+..+... +++++|+|++.++++++.|+.+++||+.... .....+|
T Consensus 297 -~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~ 375 (456)
T KOG0266|consen 297 -SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGH 375 (456)
T ss_pred -CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeeccc
Confidence 9999999999999999999999999 56777766654 9999999999999999999999999999776 6666677
Q ss_pred cccc--eeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160 235 AEKI--MKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 235 ~~~~--~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~ 271 (316)
...+ .......+.+.++++++.|+.|.+|++.++...
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~ 414 (456)
T KOG0266|consen 376 SNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGIL 414 (456)
T ss_pred CCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchh
Confidence 6653 222223558899999999999999999875443
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.6e-31 Score=210.21 Aligned_cols=232 Identities=13% Similarity=0.186 Sum_probs=187.8
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCC-C--
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT-P-- 78 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~-~-- 78 (316)
+|.+++|+...... ..+.. |+++|.++.|+..| ++|++++.|+++.+||..++.+.+...... +
T Consensus 256 ~G~~riw~~~G~l~-~tl~~-----------HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~l 322 (524)
T KOG0273|consen 256 DGEARIWNKDGNLI-STLGQ-----------HKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPAL 322 (524)
T ss_pred CcEEEEEecCchhh-hhhhc-----------cCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccCCcc
Confidence 68999999866432 23322 89999999999999 999999999999999998877654321100 0
Q ss_pred -c-----------------eec-----ccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCcc
Q 021160 79 -V-----------------DTF-----CPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPE 134 (316)
Q Consensus 79 -~-----------------~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 134 (316)
| ..+ .+.....+|...|.++.|+|.|.+|+++ .|++++||.....
T Consensus 323 DVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~----------- 391 (524)
T KOG0273|consen 323 DVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS----------- 391 (524)
T ss_pred ceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-----------
Confidence 0 000 0111225799999999999999999995 7999999998776
Q ss_pred ccccCCCcceeeCCcCCceeeeEEEecCC---------CcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCC
Q 021160 135 DLQKREEPQVYSGHRNSQTVKGVNFFGPN---------DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH 205 (316)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~ 205 (316)
.....+.+|... |..+.| +|. +..+++++.|++|++||+..+.++..|..|..+|.+++|+|+
T Consensus 392 -----~~~~~l~~Hske--i~t~~w-sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~ 463 (524)
T KOG0273|consen 392 -----NSVHDLQAHSKE--IYTIKW-SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN 463 (524)
T ss_pred -----cchhhhhhhccc--eeeEee-cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC
Confidence 577888899865 999988 775 447999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160 206 IPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 266 (316)
Q Consensus 206 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~ 266 (316)
++++|+|+.||.|.+|+.+.+++..-......+..+. |..++..+...-.|+.+.+.|++
T Consensus 464 g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~-Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELC-WNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CcEEEecCCCCeeEeccccchheeEeecCCCeEEEEE-EcCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999999998544444455566666 77777888888899999999875
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=3.8e-31 Score=222.77 Aligned_cols=231 Identities=15% Similarity=0.152 Sum_probs=196.6
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+..|++|.++.+.. +....... .||...|.+++++..+..+|++++.|+++++|++...+.. ..|+.
T Consensus 386 D~svilWr~~~~~~-~~~~~a~~------~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~-----~~~~~- 452 (775)
T KOG0319|consen 386 DKSVILWRLNNNCS-KSLCVAQA------NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKET-----AFPIV- 452 (775)
T ss_pred CceEEEEEecCCcc-hhhhhhhh------cccccccceeeecccCccEEEEecCCceEEEecCCCcccc-----cccce-
Confidence 46899999954433 33333222 2699999999999999899999999999999999873311 11222
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
+........|...|++++++|+.++++++ .|++.+||+++.. ....++.||+-+ ++++.|
T Consensus 453 ~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~----------------~l~~vLsGH~RG--vw~V~F- 513 (775)
T KOG0319|consen 453 LTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL----------------RLLGVLSGHTRG--VWCVSF- 513 (775)
T ss_pred ehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc----------------eEEEEeeCCccc--eEEEEe-
Confidence 22233346799999999999999999996 6999999999977 688999999966 999999
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM 239 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~ 239 (316)
++..+.++++|.|++|+||.+.+..++.++.+|+..|..++|-.+++.|++++.||.|++|++.++. ..++..|.+.+.
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW 593 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW 593 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 899999999998
Q ss_pred eeeecCCCCceeEEecCCCeEEEEEe
Q 021160 240 KANKQGREDHSRITLTPDVIMHVLRL 265 (316)
Q Consensus 240 ~~~~~~~~~~~~~s~~~d~~~~~w~~ 265 (316)
.+. ..+....+++++.||.+.+|.=
T Consensus 594 aL~-~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 594 ALS-VSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred EEe-ecCccceeEecCCCeEEEEeec
Confidence 887 5666669999999999999953
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-30 Score=202.48 Aligned_cols=198 Identities=14% Similarity=0.219 Sum_probs=177.6
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 110 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 110 (316)
.||...|.+++|-|.| .++++++.|.+|+.|++.++. |..++ .+|...|..++.+.||.+++++
T Consensus 190 ~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~--------------cv~t~-~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 190 IGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGY--------------CVKTF-PGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred cCcccceeeEEEEecC-CeeeecccccceeEEecccce--------------eEEec-cCchHhEEEEEecCCeeEEEec
Confidence 3688899999999999 999999999999999999997 56666 8899999999999999999995
Q ss_pred -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC---------------CCcEEEEeccCC
Q 021160 111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP---------------NDEYVMSGSDCG 174 (316)
Q Consensus 111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~~l~~~~~dg 174 (316)
.|.++++|-+.++ .....+..|... |.+++| .| .++++.+++.|+
T Consensus 254 s~dqtl~vW~~~t~----------------~~k~~lR~hEh~--vEci~w-ap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 254 SNDQTLRVWVVATK----------------QCKAELREHEHP--VECIAW-APESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred CCCceEEEEEeccc----------------hhhhhhhccccc--eEEEEe-cccccCcchhhccCCCCCccEEEeecccc
Confidence 7999999999887 677888889877 999988 43 236999999999
Q ss_pred eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEE
Q 021160 175 HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRIT 253 (316)
Q Consensus 175 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s 253 (316)
+|++||+.++.++.++.+|...|..++|+|.|++|+++..|+++++||+++.+ ..++..|..-+..+. +..+..++++
T Consensus 315 tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD-fh~~~p~VvT 393 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD-FHKTAPYVVT 393 (406)
T ss_pred eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEe-cCCCCceEEe
Confidence 99999999999999999999999999999999999999999999999999987 777777777665555 7777779999
Q ss_pred ecCCCeEEEEE
Q 021160 254 LTPDVIMHVLR 264 (316)
Q Consensus 254 ~~~d~~~~~w~ 264 (316)
|+-|.++++|.
T Consensus 394 GsVdqt~KvwE 404 (406)
T KOG0295|consen 394 GSVDQTVKVWE 404 (406)
T ss_pred ccccceeeeee
Confidence 99999999996
No 31
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=5.9e-31 Score=211.73 Aligned_cols=217 Identities=14% Similarity=0.200 Sum_probs=180.3
Q ss_pred CceeeEEEEeeCC-CcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160 1 MVLFNMLFDLRSD-SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV 79 (316)
Q Consensus 1 ~~g~v~vwd~~~~-~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~ 79 (316)
|+|.|+||++... ++.+.+ .||+.+|.+++|+++| ..|++++.|+.|++||+++|++.
T Consensus 235 mD~~vklW~vy~~~~~lrtf-----------~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtETG~~~--------- 293 (503)
T KOG0282|consen 235 MDGLVKLWNVYDDRRCLRTF-----------KGHRKPVRDASFNNCG-TSFLSASFDRFLKLWDTETGQVL--------- 293 (503)
T ss_pred CCceEEEEEEecCcceehhh-----------hcchhhhhhhhccccC-CeeeeeecceeeeeeccccceEE---------
Confidence 7899999999873 343333 3589999999999999 89999999999999999999843
Q ss_pred eecccccccCCCcccEEEEEEccCC-C-eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160 80 DTFCPRHLIGKNNIHITGLAYSNTS-E-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 157 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~-~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 157 (316)
..+ .....++|+.|+|++ + +|+++.|+.|+.||++++ +.++.+..|-.. |..+
T Consensus 294 -----~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----------------kvvqeYd~hLg~--i~~i 348 (503)
T KOG0282|consen 294 -----SRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----------------KVVQEYDRHLGA--ILDI 348 (503)
T ss_pred -----EEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch----------------HHHHHHHhhhhh--eeee
Confidence 222 124567899999998 4 555568999999999999 899999988866 9999
Q ss_pred EEecCCCcEEEEeccCCeEEEEeccCCeeEE----------------------------------------------Eee
Q 021160 158 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR----------------------------------------------LMV 191 (316)
Q Consensus 158 ~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~----------------------------------------------~~~ 191 (316)
.| -++|.++++.++|+.+++|+.+.+-.+. .+.
T Consensus 349 ~F-~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe 427 (503)
T KOG0282|consen 349 TF-VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE 427 (503)
T ss_pred EE-ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhc
Confidence 99 7899999999999999999976543221 233
Q ss_pred cCc--cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160 192 GDR--HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 264 (316)
Q Consensus 192 ~~~--~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~ 264 (316)
+|. +--..+.|||||.+|++|+.||.+.+||.++.+ +..+..|...++...|.+.+...+++++-+|.|++|+
T Consensus 428 Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 428 GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 444 334568999999999999999999999999887 7788889888888886666899999999999999995
No 32
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.2e-30 Score=189.66 Aligned_cols=253 Identities=13% Similarity=0.162 Sum_probs=193.9
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF 82 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~ 82 (316)
|.+.|-++...+....+..... ...+..++|++...+.+++++.||.+++||+.... .|+..+
T Consensus 38 G~L~ile~~~~~gi~e~~s~d~---------~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--------~Pi~~~ 100 (311)
T KOG0277|consen 38 GRLFILEVTDPKGIQECQSYDT---------EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--------KPIHKF 100 (311)
T ss_pred ceEEEEecCCCCCeEEEEeeec---------ccceeEeeecCCCcceEEEEecCceEEEeccCCCC--------cchhHH
Confidence 6777888764444444443322 45799999999887899999999999999965433 234433
Q ss_pred ccccccCCCcccEEEEEEccCCC--eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 83 CPRHLIGKNNIHITGLAYSNTSE--LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
+.|...|.++.|++..+ ++.++-|++|++|+...+ +.++++.+|... |....|+
T Consensus 101 ------kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~----------------~Sv~Tf~gh~~~--Iy~a~~s 156 (311)
T KOG0277|consen 101 ------KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP----------------NSVQTFNGHNSC--IYQAAFS 156 (311)
T ss_pred ------HhhhhheEEeccccccceeEEeeccCCceEeecCCCC----------------cceEeecCCccE--EEEEecC
Confidence 78999999999999765 444457999999999888 788999999966 9999996
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEecCCCCC--CCCCCCCccc
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTD--FPPLPDNAEK 237 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~ 237 (316)
+..++++++++.|+.+++||++..-....++.|...|.++.|+.-. +.++||+.|+.||.||++..+ +..+.+|.-.
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A 236 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA 236 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence 6678899999999999999988643334488999999999999855 458999999999999999876 7778889888
Q ss_pred ceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE-----------Eeec-ccccccccCCCCeEEEEe
Q 021160 238 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR-----------ERRY-NAADFESDEEEGETYLLG 296 (316)
Q Consensus 238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~v~~~~ 296 (316)
+..+.+.+....++++++.|-++++||...+....-. ++++ ....+++..=|+.+|+|+
T Consensus 237 VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 237 VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred EEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 8777744446789999999999999998865333110 1211 334455555555566664
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.2e-29 Score=185.52 Aligned_cols=232 Identities=16% Similarity=0.234 Sum_probs=196.1
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 110 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 110 (316)
.|.++|.++.|+-+| +|.++++.|.+|++|+...+. ++++. .+|...|..++.+.|+..+++ +
T Consensus 15 ~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~--------------liktY-sghG~EVlD~~~s~Dnskf~s~G 78 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGA--------------LIKTY-SGHGHEVLDAALSSDNSKFASCG 78 (307)
T ss_pred ccccceEEEEEccCC-CEEEEcCCCceEEeecccccc--------------eeeee-cCCCceeeeccccccccccccCC
Confidence 478999999999999 999999999999999999886 34443 899999999999999987777 5
Q ss_pred cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC--CeeEE
Q 021160 111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG--GKLVR 188 (316)
Q Consensus 111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~--~~~~~ 188 (316)
.|+.+.+||+.++ +..+.+.+|... |+.+.| +.+...+++|+.|..+++||.++ .++++
T Consensus 79 gDk~v~vwDV~TG----------------kv~Rr~rgH~aq--VNtV~f-NeesSVv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 79 GDKAVQVWDVNTG----------------KVDRRFRGHLAQ--VNTVRF-NEESSVVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred CCceEEEEEcccC----------------eeeeecccccce--eeEEEe-cCcceEEEeccccceeEEEEcccCCCCccc
Confidence 8999999999999 899999999977 999999 88999999999999999999774 57788
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 189 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 189 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
.+......|.++... +..|++|+.||++|.||++.+.+..-. ...++ ....++++++..+.++-|+++++.|-.++
T Consensus 140 ildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy-~g~pi-t~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 140 ILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY-FGHPI-TSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred hhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh-cCCcc-eeEEecCCCCEEEEeeccceeeecccchh
Confidence 888888899999885 446999999999999999998743321 23344 44558999999999999999999998876
Q ss_pred Ccce---------eE---EeecccccccccCCCCeEEEEeccCCCC
Q 021160 269 QTLA---------YR---ERRYNAADFESDEEEGETYLLGFSDSDA 302 (316)
Q Consensus 269 ~~~~---------~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 302 (316)
+.+. |. ........+.+++++|.||+||+.++..
T Consensus 216 klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 216 KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred HHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecccee
Confidence 4442 22 3445567788899999999999988754
No 34
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.9e-29 Score=196.43 Aligned_cols=262 Identities=11% Similarity=0.164 Sum_probs=199.6
Q ss_pred CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCC--cEEEEEecCCcEEEEeCcCCcccCCCCCCCC
Q 021160 1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKCHWYSPISSDTP 78 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~--~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~ 78 (316)
++|.+++||+... ..+.+. ||.++|.+++|.-.++ ..|++++.|.++++|..+.++....
T Consensus 123 YDg~~riWd~~Gk-~~~~~~-----------Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~------ 184 (423)
T KOG0313|consen 123 YDGTSRIWDLKGK-SIKTIV-----------GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK------ 184 (423)
T ss_pred cCCeeEEEecCCc-eEEEEe-----------cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh------
Confidence 5899999998654 333332 5899999888854431 3699999999999999987753211
Q ss_pred ceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccC---------CccccccCCCcceeeCC
Q 021160 79 VDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSL---------SPEDLQKREEPQVYSGH 148 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 148 (316)
+.. ...+|...|.+++..++|..++++ .|.+|.+|+.........-.. .-....++.++-.+.+|
T Consensus 185 ----~~~-~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 185 ----ALK-VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred ----HHh-HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 111 114999999999999999988886 699999999433211000000 00112234567788999
Q ss_pred cCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-
Q 021160 149 RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD- 227 (316)
Q Consensus 149 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~- 227 (316)
..+ |.++.| ++ ...+++++.|.+|+.||+.++..+..+.+. ...+++..+|..++|++|+.|..|++||++++.
T Consensus 260 t~~--Vs~V~w-~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 260 TEP--VSSVVW-SD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred ccc--eeeEEE-cC-CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence 977 999999 55 778999999999999999999999888754 578999999999999999999999999999875
Q ss_pred ---CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeEEeecccccccccCCCCeEEEEeccCC
Q 021160 228 ---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDS 300 (316)
Q Consensus 228 ---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 300 (316)
.+++.+|...+..+.|.+.+...+++++.|+++++||++....+ ...+..+++. |+.+|...+
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p--------lydI~~h~DK--vl~vdW~~~ 400 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP--------LYDIAGHNDK--VLSVDWNEG 400 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc--------ceeeccCCce--EEEEeccCC
Confidence 56778999988777754457788999999999999999988766 3455555555 777777655
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=9.4e-28 Score=180.24 Aligned_cols=223 Identities=14% Similarity=0.176 Sum_probs=178.4
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+..|++|++.+...-.+.... +-+|+..|.+++|+|.| ++|++|+.|.++.||.-..++..
T Consensus 36 Dk~vriw~~~~~~s~~ck~vl-------d~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~efe----------- 96 (312)
T KOG0645|consen 36 DKAVRIWSTSSGDSWTCKTVL-------DDGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDGEFE----------- 96 (312)
T ss_pred CceEEEEecCCCCcEEEEEec-------cccchheeeeeeecCCC-cEEEEeeccceEEEeecCCCcee-----------
Confidence 356899998853322222111 12589999999999999 89999999999999987766421
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
|...+ .+|...|.+++|+++|++||++ .|+.|-||.+.... .......+.+|... |..+.|
T Consensus 97 -cv~~l-EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-------------Efec~aVL~~HtqD--VK~V~W- 158 (312)
T KOG0645|consen 97 -CVATL-EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-------------EFECIAVLQEHTQD--VKHVIW- 158 (312)
T ss_pred -EEeee-eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-------------cEEEEeeecccccc--ccEEEE-
Confidence 33333 8999999999999999999996 69999999987441 11466778899966 999999
Q ss_pred cCCCcEEEEeccCCeEEEEecc---CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCccc
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKK---GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEK 237 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 237 (316)
+|...+|++++.|.+|++|.-. .-++.+++.+|...|.+++|+|.|..|++++.|++++||.....-. ..|..+
T Consensus 159 HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~---~~~sr~ 235 (312)
T KOG0645|consen 159 HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS---GMHSRA 235 (312)
T ss_pred cCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc---hhcccc
Confidence 8999999999999999999876 3468899999999999999999999999999999999999663221 125566
Q ss_pred ceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160 238 IMKANKQGREDHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~ 267 (316)
++.+.|. ...+++++.|+.++++.-..
T Consensus 236 ~Y~v~W~---~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 236 LYDVPWD---NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred eEeeeec---ccceEeccCCCEEEEEEecC
Confidence 7667754 45899999999999997653
No 36
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=2.8e-28 Score=210.89 Aligned_cols=228 Identities=10% Similarity=0.085 Sum_probs=165.7
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.|.|++|++..... +.. ..+|.++|.+++|+|+.+.+|++|+.|+.|++||+.++..... ....+
T Consensus 53 ~gvI~L~~~~r~~~--v~~---------L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~i~~p--- 117 (568)
T PTZ00420 53 IGAIRLENQMRKPP--VIK---------LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-EIKDP--- 117 (568)
T ss_pred eeEEEeeecCCCce--EEE---------EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-ccccc---
Confidence 45667776654322 211 2368999999999997448999999999999999986431000 00011
Q ss_pred cccccccCCCcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
.....+|...|.+++|+|++. +|++ +.|++|++||++++ .....+. +... |.+++|
T Consensus 118 ---~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg----------------~~~~~i~-~~~~--V~Slsw 175 (568)
T PTZ00420 118 ---QCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE----------------KRAFQIN-MPKK--LSSLKW 175 (568)
T ss_pred ---eEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC----------------cEEEEEe-cCCc--EEEEEE
Confidence 112368899999999999987 4556 57999999999887 4444454 3434 999999
Q ss_pred ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEE-----EEcCCCCeEEEEeCCC----cEEEecCCCC-C-C
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQL-----EPHPHIPMFATCGIEK----TVKLWAPMPT-D-F 228 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~-----~~~p~~~~l~s~~~d~----~i~iwd~~~~-~-~ 228 (316)
+++|.+|++++.|+.|++||+++++.+..+.+|.+.+... .|++++.+|++++.|+ .|+|||++.. . +
T Consensus 176 -spdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl 254 (568)
T PTZ00420 176 -NIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL 254 (568)
T ss_pred -CCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce
Confidence 9999999999999999999999999999999998765432 3458889999888774 7999999853 3 2
Q ss_pred CCC--CCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 229 PPL--PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 229 ~~~--~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
..+ ..+...+ ...+.+.++.++++|+.|+.+++|++..+
T Consensus 255 ~~~~ld~~~~~L-~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 255 VTMSIDNASAPL-IPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEEecCCccce-EEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 222 1222222 22323456888999999999999998765
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=5.9e-28 Score=197.13 Aligned_cols=221 Identities=20% Similarity=0.333 Sum_probs=183.9
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+|.|++||+.+.+....+. +|...+..+.|+|++ +++++++.+|.|++|++.+++
T Consensus 30 ~g~i~i~~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~------------- 84 (289)
T cd00200 30 DGTIKVWDLETGELLRTLK-----------GHTGPVRDVAASADG-TYLASGSSDKTIRLWDLETGE------------- 84 (289)
T ss_pred CcEEEEEEeeCCCcEEEEe-----------cCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCccc-------------
Confidence 5889999998776433333 267788999999998 899999999999999998764
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEec-CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
....+ ..|...+.++.|++++++++++. ++.|.+||+.+. +....+..|... +.+++|
T Consensus 85 -~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------------~~~~~~~~~~~~--i~~~~~- 143 (289)
T cd00200 85 -CVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG----------------KCLTTLRGHTDW--VNSVAF- 143 (289)
T ss_pred -ceEEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc----------------EEEEEeccCCCc--EEEEEE-
Confidence 22222 46777899999999988888875 999999999866 566677777755 999999
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM 239 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~ 239 (316)
+|++.++++++.++.+++||+++++.+..+..|...+.+++|+|+++.+++++.|+.|++||++..+ ...+..+...+.
T Consensus 144 ~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 223 (289)
T cd00200 144 SPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN 223 (289)
T ss_pred cCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceE
Confidence 8889999999889999999999999998998998899999999999999999999999999998766 555556776776
Q ss_pred eeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160 240 KANKQGREDHSRITLTPDVIMHVLRLQRRQ 269 (316)
Q Consensus 240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~ 269 (316)
.+. +.+++.++++++.++.+++|++.++.
T Consensus 224 ~~~-~~~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 224 SVA-FSPDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred EEE-EcCCCcEEEEEcCCCcEEEEEcCCce
Confidence 665 66778888888889999999988643
No 38
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.9e-28 Score=223.33 Aligned_cols=250 Identities=14% Similarity=0.138 Sum_probs=190.4
Q ss_pred ceeeEEEEeeCCCc------ceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCC
Q 021160 2 VLFNMLFDLRSDSA------TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS 75 (316)
Q Consensus 2 ~g~v~vwd~~~~~~------~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~ 75 (316)
+|.|+|||+..... .+.... .+...|.+++|+|....+|++++.||.|++||+.+++
T Consensus 504 D~~I~iwd~~~~~~~~~~~~~~~~~~----------~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~------- 566 (793)
T PLN00181 504 NKKIKIFECESIIKDGRDIHYPVVEL----------ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ------- 566 (793)
T ss_pred CCEEEEEECCcccccccccccceEEe----------cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-------
Confidence 68999999864211 011111 1345799999998654899999999999999998776
Q ss_pred CCCceecccccccCCCcccEEEEEEcc-CCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCce
Q 021160 76 DTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153 (316)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (316)
....+ .+|...|++++|+| ++.+|+++ .|++|++||++++ .....+..+ ..
T Consensus 567 -------~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~----------------~~~~~~~~~-~~-- 619 (793)
T PLN00181 567 -------LVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG----------------VSIGTIKTK-AN-- 619 (793)
T ss_pred -------EEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC----------------cEEEEEecC-CC--
Confidence 22233 68999999999997 67788875 7999999999877 555666644 23
Q ss_pred eeeEEEecCCCcEEEEeccCCeEEEEeccCCe-eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC------
Q 021160 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT------ 226 (316)
Q Consensus 154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~------ 226 (316)
+.++.|.++++.++++|+.||.|++||+++++ .+..+.+|...|.+++|. ++.+|++++.|++|++||++..
T Consensus 620 v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~ 698 (793)
T PLN00181 620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINE 698 (793)
T ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCC
Confidence 88999866789999999999999999998765 467788999999999997 6788999999999999998742
Q ss_pred -CCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc----------------------eeE-Eeeccccc
Q 021160 227 -DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL----------------------AYR-ERRYNAAD 282 (316)
Q Consensus 227 -~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~----------------------~~~-~~~~~~~~ 282 (316)
.+..+.+|...+..+. +++++.++++++.|+.+++|+....... +.. .+.+++..
T Consensus 699 ~~l~~~~gh~~~i~~v~-~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 699 TPLHSFMGHTNVKNFVG-LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST 777 (793)
T ss_pred cceEEEcCCCCCeeEEE-EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence 2556667776654444 7788899999999999999996533111 111 45666666
Q ss_pred ccccCCCCeEEEEec
Q 021160 283 FESDEEEGETYLLGF 297 (316)
Q Consensus 283 ~~~~~~~~~v~~~~~ 297 (316)
+..+..+|.|.+|++
T Consensus 778 lva~~~dG~I~i~~~ 792 (793)
T PLN00181 778 LVAANSTGNIKILEM 792 (793)
T ss_pred EEEecCCCcEEEEec
Confidence 677777777777764
No 39
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2.9e-28 Score=209.66 Aligned_cols=212 Identities=10% Similarity=0.136 Sum_probs=166.0
Q ss_pred CCCccceEEEEECC-CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEE
Q 021160 31 PMNSIRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLI 108 (316)
Q Consensus 31 ~gh~~~v~~~~~~~-~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~ 108 (316)
.||.+.|++++|+| ++ ++|++|+.|++|++||+.++..... ...++. ...+|...|.+++|+|++ .+|+
T Consensus 72 ~GH~~~V~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~~~~--~~~~l~------~L~gH~~~V~~l~f~P~~~~iLa 142 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGLTQN--ISDPIV------HLQGHTKKVGIVSFHPSAMNVLA 142 (493)
T ss_pred eCCCCCEEEEEEcCCCC-CEEEEEeCCCEEEEEecCCCccccc--cCcceE------EecCCCCcEEEEEeCcCCCCEEE
Confidence 57999999999999 55 8999999999999999986532110 001122 227899999999999986 5777
Q ss_pred E-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE
Q 021160 109 S-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 187 (316)
Q Consensus 109 s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~ 187 (316)
+ +.|++|++||++++ .....+.+|... |.+++| +|++.+|++++.|+.|++||+++++.+
T Consensus 143 Sgs~DgtVrIWDl~tg----------------~~~~~l~~h~~~--V~sla~-spdG~lLatgs~Dg~IrIwD~rsg~~v 203 (493)
T PTZ00421 143 SAGADMVVNVWDVERG----------------KAVEVIKCHSDQ--ITSLEW-NLDGSLLCTTSKDKKLNIIDPRDGTIV 203 (493)
T ss_pred EEeCCCEEEEEECCCC----------------eEEEEEcCCCCc--eEEEEE-ECCCCEEEEecCCCEEEEEECCCCcEE
Confidence 7 47999999999887 567778888866 999999 899999999999999999999999999
Q ss_pred EEeecCccc-eEEEEEcCCCCeEEEEe----CCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEec-CCCe
Q 021160 188 RLMVGDRHV-VNQLEPHPHIPMFATCG----IEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLT-PDVI 259 (316)
Q Consensus 188 ~~~~~~~~~-v~~~~~~p~~~~l~s~~----~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~d~~ 259 (316)
..+.+|.+. +..+.|.|++..+++++ .|+.|++||++... ......+.........+++++.++++++ .|+.
T Consensus 204 ~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~ 283 (493)
T PTZ00421 204 SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN 283 (493)
T ss_pred EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe
Confidence 999888764 45678999888877654 47899999998654 2222222333334445777888888776 5999
Q ss_pred EEEEEecccCc
Q 021160 260 MHVLRLQRRQT 270 (316)
Q Consensus 260 ~~~w~~~~~~~ 270 (316)
|++|++..+..
T Consensus 284 Iriwdl~~~~~ 294 (493)
T PTZ00421 284 IRCFELMNERL 294 (493)
T ss_pred EEEEEeeCCce
Confidence 99999987653
No 40
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.2e-29 Score=193.94 Aligned_cols=244 Identities=14% Similarity=0.168 Sum_probs=201.3
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 110 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 110 (316)
|.+..+-|..|+|++ +++++|+.||.|.+||..++++.+.+. ......+ --+..+|.|+.|+.|.+++++|
T Consensus 211 g~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLk------YQAqd~f-MMmd~aVlci~FSRDsEMlAsGs 282 (508)
T KOG0275|consen 211 GQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLK------YQAQDNF-MMMDDAVLCISFSRDSEMLASGS 282 (508)
T ss_pred ccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhh------hhhhcce-eecccceEEEeecccHHHhhccC
Confidence 345668899999999 899999999999999999998643321 1111111 3467899999999999999996
Q ss_pred cCCcEEEEEcCCCCCCCCccCCccccccCCCcceee-CCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160 111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189 (316)
Q Consensus 111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~ 189 (316)
.||.|++|.++++ .+++.|. .|..+ |+++.| +.|+..+++++.|.++++.-+++|+++..
T Consensus 283 qDGkIKvWri~tG----------------~ClRrFdrAHtkG--vt~l~F-SrD~SqiLS~sfD~tvRiHGlKSGK~LKE 343 (508)
T KOG0275|consen 283 QDGKIKVWRIETG----------------QCLRRFDRAHTKG--VTCLSF-SRDNSQILSASFDQTVRIHGLKSGKCLKE 343 (508)
T ss_pred cCCcEEEEEEecc----------------hHHHHhhhhhccC--eeEEEE-ccCcchhhcccccceEEEeccccchhHHH
Confidence 6999999999999 7888887 78866 999999 99999999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCC--CcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160 190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD--NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 266 (316)
Q Consensus 190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~ 266 (316)
+.+|.+.|+.+.|.++|..+++++.||+|++|+..+.+ +.++.. ..-++......+.+...++.+...+++.+.+++
T Consensus 344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 99999999999999999999999999999999998876 555543 334455555566677888888899999999876
Q ss_pred ccC----------cc--eeEEeecccccccccCCCCeEEEEeccCCCC
Q 021160 267 RRQ----------TL--AYRERRYNAADFESDEEEGETYLLGFSDSDA 302 (316)
Q Consensus 267 ~~~----------~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 302 (316)
..- .- +....+|.+.++..-.+++.+|.+...+|.-
T Consensus 424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce
Confidence 431 11 2226788899999999999999999887753
No 41
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=8.9e-30 Score=205.00 Aligned_cols=240 Identities=13% Similarity=0.229 Sum_probs=195.3
Q ss_pred cCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcC-CcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeE
Q 021160 29 KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 107 (316)
Q Consensus 29 ~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 107 (316)
.++||+..|+++.|.|....+|++++.|+.|+||++.. ++ |.++. .+|..+|..++|+++|..+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~--------------~lrtf-~gH~k~Vrd~~~s~~g~~f 273 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR--------------CLRTF-KGHRKPVRDASFNNCGTSF 273 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcc--------------eehhh-hcchhhhhhhhccccCCee
Confidence 34689999999999994438999999999999999986 43 44444 8999999999999999866
Q ss_pred EE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC-cEEEEeccCCeEEEEeccCCe
Q 021160 108 IS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGK 185 (316)
Q Consensus 108 ~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~~wd~~~~~ 185 (316)
.+ +-|+.|++||++++ +....+... ..++++.| .|++ +.+++|+.|+.|+.||+++++
T Consensus 274 LS~sfD~~lKlwDtETG----------------~~~~~f~~~---~~~~cvkf-~pd~~n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 274 LSASFDRFLKLWDTETG----------------QVLSRFHLD---KVPTCVKF-HPDNQNIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred eeeecceeeeeeccccc----------------eEEEEEecC---CCceeeec-CCCCCcEEEEecCCCcEEEEeccchH
Confidence 66 57999999999999 676666543 23899999 7776 889999999999999999999
Q ss_pred eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160 186 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 264 (316)
Q Consensus 186 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~ 264 (316)
.++.+..|-+.|..+.|-++++.+++.+.|+.++||+.+... +.....+...-+......+.+.++++-+-|+.+-++.
T Consensus 334 vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 334 VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence 999999899999999999999999999999999999998775 2222222222233444677888999999999888887
Q ss_pred eccc------------CcceeE---EeecccccccccCCCCeEEEEeccCCCCC
Q 021160 265 LQRR------------QTLAYR---ERRYNAADFESDEEEGETYLLGFSDSDAS 303 (316)
Q Consensus 265 ~~~~------------~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 303 (316)
+... ....|. .++|++..+.+++.+|++++||+..-..-
T Consensus 414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLV 467 (503)
T ss_pred cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhh
Confidence 6432 122222 79999999999999999999998766543
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-28 Score=204.73 Aligned_cols=213 Identities=15% Similarity=0.247 Sum_probs=173.7
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+++|+|++.++.+..+.|-. |..-|.+++.||.. .++++++.|-.|++||.+..=
T Consensus 76 D~~IrVfnynt~ekV~~FeA-----------H~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~w------------- 130 (794)
T KOG0276|consen 76 DMQIRVFNYNTGEKVKTFEA-----------HSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEW------------- 130 (794)
T ss_pred CceEEEEecccceeeEEeec-----------cccceeeeeecCCC-CeEEecCCccEEEEeeccCce-------------
Confidence 57899999998887777665 78899999999999 699999999999999998543
Q ss_pred cccccccCCCcccEEEEEEccCC-CeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTS-ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
.......+|...|.+++|+|.. +.++++ -|++|++|.+... .+..++.+|..+ |+|++|
T Consensus 131 -a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~----------------~~nfTl~gHekG--VN~Vdy 191 (794)
T KOG0276|consen 131 -ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP----------------HPNFTLEGHEKG--VNCVDY 191 (794)
T ss_pred -eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC----------------CCceeeeccccC--cceEEe
Confidence 2233348999999999999976 477774 6999999999888 688899999976 999999
Q ss_pred ec-CCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCccc
Q 021160 160 FG-PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEK 237 (316)
Q Consensus 160 ~~-~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~ 237 (316)
++ ++..+|++|++|.++++||.++.+|++++.+|...|..+.|+|.-+++++||+||++|||+..+-+ ..++.-..+.
T Consensus 192 y~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleR 271 (794)
T KOG0276|consen 192 YTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLER 271 (794)
T ss_pred ccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCce
Confidence 53 345699999999999999999999999999999999999999999999999999999999988876 4444444455
Q ss_pred ceeeeecCCCCceeEEecCCCe
Q 021160 238 IMKANKQGREDHSRITLTPDVI 259 (316)
Q Consensus 238 ~~~~~~~~~~~~~~~s~~~d~~ 259 (316)
+..+. ..+.++.++.|..+|.
T Consensus 272 vW~I~-~~k~~~~i~vG~Deg~ 292 (794)
T KOG0276|consen 272 VWCIA-AHKGDGKIAVGFDEGS 292 (794)
T ss_pred EEEEe-ecCCCCeEEEeccCCc
Confidence 55544 2233334444444443
No 43
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=1.3e-28 Score=197.03 Aligned_cols=241 Identities=14% Similarity=0.185 Sum_probs=189.3
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.|.|.|||.......+.... ...+..+..||...-.+++|++...-.+++|+.|++|.+||+...... -..
T Consensus 146 ~~dv~Vfd~tk~~s~~~~~~-~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~--------~~~ 216 (422)
T KOG0264|consen 146 SGDVYVFDYTKHPSKPKASG-ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE--------DKV 216 (422)
T ss_pred CCCEEEEEeccCCCcccccc-cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC--------Ccc
Confidence 47899999987654433322 333444556888888899999988789999999999999999865411 111
Q ss_pred cccccccCCCcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
..+...+.+|...|..++|++... ++++ +.|+.+.|||+++.. .++.+...+|..+ +.|++|
T Consensus 217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~--------------~~~~~~~~ah~~~--vn~~~f 280 (422)
T KOG0264|consen 217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT--------------SKPSHSVKAHSAE--VNCVAF 280 (422)
T ss_pred ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC--------------CCCcccccccCCc--eeEEEe
Confidence 245556689999999999999876 5555 579999999999520 0566778888877 999999
Q ss_pred ecCCCcEEEEeccCCeEEEEeccC-CeeEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCC----------
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD---------- 227 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~---------- 227 (316)
.+.++..||+|+.|++|.+||++. .+++..+.+|...|.++.|+|+.. .||+++.|+.+.|||+..-.
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 666778889999999999999986 456889999999999999999765 48999999999999986421
Q ss_pred -----CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160 228 -----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 228 -----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~ 267 (316)
+..-.+|...|....|.+.+...+++++.|+.++||++..
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 1233478888888886666888899999999999998653
No 44
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.2e-29 Score=184.36 Aligned_cols=220 Identities=17% Similarity=0.205 Sum_probs=179.2
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+|.|++||+.... .++. .. +.|+.+|.++.|++.....+++++.|++|++|+...++ .+.+
T Consensus 82 DGSLrl~d~~~~s-~Pi~---~~------kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~---------Sv~T 142 (311)
T KOG0277|consen 82 DGSLRLFDLTMPS-KPIH---KF------KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN---------SVQT 142 (311)
T ss_pred CceEEEeccCCCC-cchh---HH------HhhhhheEEeccccccceeEEeeccCCceEeecCCCCc---------ceEe
Confidence 6999999964332 2222 22 24899999999999876889999999999999998665 3333
Q ss_pred cccccccCCCcccEEEEEEccCC-CeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
| .+|...|...+|+|.. +++++ +.|+++++||++.. .....+..|..+ +.++.|
T Consensus 143 f------~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~----------------gk~~~i~ah~~E--il~cdw 198 (311)
T KOG0277|consen 143 F------NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP----------------GKFMSIEAHNSE--ILCCDW 198 (311)
T ss_pred e------cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC----------------CceeEEEeccce--eEeecc
Confidence 3 8899999999999975 57777 57999999999876 344458888866 999999
Q ss_pred ecCCCcEEEEeccCCeEEEEeccC-CeeEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCC--CCCCCCCc
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD--FPPLPDNA 235 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~--~~~~~~~~ 235 (316)
..-+...+++|+.|+.|+.||++. ..++..+.+|.-.|..+.|||... .||+++.|-++||||...+. +.+..-|.
T Consensus 199 ~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht 278 (311)
T KOG0277|consen 199 SKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT 278 (311)
T ss_pred cccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence 666788999999999999999886 356788899999999999999764 59999999999999998665 55555677
Q ss_pred ccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160 236 EKIMKANKQGREDHSRITLTPDVIMHVLR 264 (316)
Q Consensus 236 ~~~~~~~~~~~~~~~~~s~~~d~~~~~w~ 264 (316)
+-+..+.|...++.++++.+-|+.+.+|+
T Consensus 279 EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 279 EFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred eEEeccccccccCceeeecccccceeeec
Confidence 77777775555888999999999999997
No 45
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.9e-27 Score=219.47 Aligned_cols=261 Identities=11% Similarity=0.126 Sum_probs=195.7
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.|.+++|+....+....+.... ..+|...|.+++|+|++ .++|+|+.|+.|+||++........ ....++.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~------~~~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~-~~~~~~~- 527 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGD------LLNSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGR-DIHYPVV- 527 (793)
T ss_pred hhhhhhhcccceEEEEeecccc------ccCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCccccccc-ccccceE-
Confidence 3556677765544322222211 12488999999999999 8999999999999999864210000 0000111
Q ss_pred cccccccCCCcccEEEEEEccC-CCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNT-SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
. ..+...+.+++|++. +.+|+++ .|++|++||+.++ +.+..+.+|... |++++|
T Consensus 528 ----~--~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~----------------~~~~~~~~H~~~--V~~l~~ 583 (793)
T PLN00181 528 ----E--LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS----------------QLVTEMKEHEKR--VWSIDY 583 (793)
T ss_pred ----E--ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC----------------eEEEEecCCCCC--EEEEEE
Confidence 1 123457899999885 5677775 7999999999887 677788889866 999999
Q ss_pred ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEc-CCCCeEEEEeCCCcEEEecCCCCC--CCCCCCCcc
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH-PHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAE 236 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~ 236 (316)
+++++.+|++|+.|+.|++||+++++.+..+..+ ..+.++.|+ +++.+|++|+.|+.|++||++... ...+.+|..
T Consensus 584 ~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~ 662 (793)
T PLN00181 584 SSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK 662 (793)
T ss_pred cCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC
Confidence 3347899999999999999999999988888755 578999995 568899999999999999998764 456677888
Q ss_pred cceeeeecCCCCceeEEecCCCeEEEEEecccC-----cc-----------eeEEeecccccccccCCCCeEEEEecc
Q 021160 237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ-----TL-----------AYRERRYNAADFESDEEEGETYLLGFS 298 (316)
Q Consensus 237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~~ 298 (316)
.+..+.+ . ++..+++++.|+.+++||+.... .+ ....+.+....++++..++.|++|+..
T Consensus 663 ~V~~v~f-~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 663 TVSYVRF-V-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CEEEEEE-e-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 8776664 3 67789999999999999986421 01 112467778899999999999999864
No 46
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=176.58 Aligned_cols=222 Identities=14% Similarity=0.173 Sum_probs=187.1
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+.+|++|+.......+.+. ||..+|..++.+.++ ..|++|+.|..+.+||+.+++
T Consensus 38 drtvrLWNp~rg~liktYs-----------ghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGk------------- 92 (307)
T KOG0316|consen 38 DRTVRLWNPLRGALIKTYS-----------GHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGK------------- 92 (307)
T ss_pred CceEEeecccccceeeeec-----------CCCceeeeccccccc-cccccCCCCceEEEEEcccCe-------------
Confidence 4579999988777666554 478899999999998 899999999999999999998
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
..+.+ .+|...|+.++|+.+...++++ -|.++++||.+.. ..++++.+....+. |.++..
T Consensus 93 -v~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~--------------s~ePiQildea~D~--V~Si~v- 153 (307)
T KOG0316|consen 93 -VDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR--------------SFEPIQILDEAKDG--VSSIDV- 153 (307)
T ss_pred -eeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcccC--------------CCCccchhhhhcCc--eeEEEe-
Confidence 33333 8999999999999999999996 5999999999876 22678888877766 999977
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM 239 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~ 239 (316)
.+..|++|+.||+++.||++.|+...-..+ .+|++++|+++++..+.++.|+++++.|-.+++ +....+|...-+
T Consensus 154 --~~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~ey 229 (307)
T KOG0316|consen 154 --AEHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEY 229 (307)
T ss_pred --cccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccccee
Confidence 467899999999999999999998766655 479999999999999999999999999999998 777888887766
Q ss_pred eeeec-CCCCceeEEecCCCeEEEEEecccCcc
Q 021160 240 KANKQ-GREDHSRITLTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 240 ~~~~~-~~~~~~~~s~~~d~~~~~w~~~~~~~~ 271 (316)
...+. ......+++++.||.+.+||+......
T Consensus 230 kldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 230 KLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred eeeeeecccceeEEeccCCceEEEEEeccceee
Confidence 65443 335678899999999999999876444
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.2e-28 Score=207.86 Aligned_cols=230 Identities=15% Similarity=0.218 Sum_probs=192.7
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 112 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 112 (316)
+..|..++|||.. ..++++-..|.|++||.+-+. ++..+ ..|.++|..+.|+|.+.++++| .|
T Consensus 9 SsRvKglsFHP~r-PwILtslHsG~IQlWDYRM~t--------------li~rF-deHdGpVRgv~FH~~qplFVSGGDD 72 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKR-PWILTSLHSGVIQLWDYRMGT--------------LIDRF-DEHDGPVRGVDFHPTQPLFVSGGDD 72 (1202)
T ss_pred cccccceecCCCC-CEEEEeecCceeeeehhhhhh--------------HHhhh-hccCCccceeeecCCCCeEEecCCc
Confidence 5578999999998 699999999999999999886 33333 8899999999999999999995 68
Q ss_pred CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec
Q 021160 113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 192 (316)
Q Consensus 113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~ 192 (316)
-.|++|+..+. +++.++.||.+. |..+.| ++.-.+|+++|+|.+|+||+.++.+++..+.+
T Consensus 73 ykIkVWnYk~r----------------rclftL~GHlDY--VRt~~F-HheyPWIlSASDDQTIrIWNwqsr~~iavltG 133 (1202)
T KOG0292|consen 73 YKIKVWNYKTR----------------RCLFTLLGHLDY--VRTVFF-HHEYPWILSASDDQTIRIWNWQSRKCIAVLTG 133 (1202)
T ss_pred cEEEEEecccc----------------eehhhhccccce--eEEeec-cCCCceEEEccCCCeEEEEeccCCceEEEEec
Confidence 89999999888 899999999976 999998 88899999999999999999999999999999
Q ss_pred CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC------------------------------CCCCCCcccceeee
Q 021160 193 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF------------------------------PPLPDNAEKIMKAN 242 (316)
Q Consensus 193 ~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~------------------------------~~~~~~~~~~~~~~ 242 (316)
|..-|.|.+|+|....++++|-|.+|||||+.+-+. +.+.+|...+--.+
T Consensus 134 HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA 213 (1202)
T KOG0292|consen 134 HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA 213 (1202)
T ss_pred CceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence 999999999999999999999999999999864221 11234555553333
Q ss_pred ecCCCCceeEEecCCCeEEEEEecccCcc-----------eeE-EeecccccccccCCCCeEEEEeccC
Q 021160 243 KQGREDHSRITLTPDVIMHVLRLQRRQTL-----------AYR-ERRYNAADFESDEEEGETYLLGFSD 299 (316)
Q Consensus 243 ~~~~~~~~~~s~~~d~~~~~w~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~v~~~~~~~ 299 (316)
+.+.-.++++++.|..|++|++..-+.. +.. -+-|....+.+.++|+.+-+||+..
T Consensus 214 -fhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 214 -FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred -ecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 5566689999999999999998753222 112 4666667778888999999999865
No 48
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.8e-28 Score=205.97 Aligned_cols=249 Identities=16% Similarity=0.170 Sum_probs=189.9
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccC--------------------------------CC------
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS--------------------------------PI------ 73 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~--------------------------------~~------ 73 (316)
.|.+.|.++.|+++| +|||+|+.|+.|+||.+...+... ..
T Consensus 265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 599999999999999 999999999999999986611000 00
Q ss_pred -----CCCCCceec--ccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceee
Q 021160 74 -----SSDTPVDTF--CPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS 146 (316)
Q Consensus 74 -----~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (316)
..+..+..| .+...+.+|.+.|..+.|+.++-+|.++.|++|++|++... .++..|.
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~----------------~CL~~F~ 407 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK----------------ECLKVFS 407 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc----------------ceeeEEe
Confidence 000001111 12223478999999999998877777788999999999877 6777776
Q ss_pred CCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160 147 GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 226 (316)
Q Consensus 147 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~ 226 (316)
|.+. |+|++|++-|.+|+++|+-|+.++||++...+.+.-...+ .-|++++|.|+|+..+.|+.+|.+++|+....
T Consensus 408 -Hndf--VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 408 -HNDF--VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred -cCCe--eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence 6655 9999998889999999999999999999988766555444 78999999999999999999999999998876
Q ss_pred CCCC---CC------CCcccceeeeecCCCCceeEEecCCCeEEEEEeccc------------CcceeEEeecccccccc
Q 021160 227 DFPP---LP------DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR------------QTLAYRERRYNAADFES 285 (316)
Q Consensus 227 ~~~~---~~------~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~------------~~~~~~~~~~~~~~~~~ 285 (316)
++.. +. .....|..+...+.+...++..+.|..|||+|.+.. .......+..++..+.+
T Consensus 484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs 563 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVS 563 (712)
T ss_pred eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEE
Confidence 5211 11 112257666655566667888899999999998443 12222357779999999
Q ss_pred cCCCCeEEEEeccCCC
Q 021160 286 DEEEGETYLLGFSDSD 301 (316)
Q Consensus 286 ~~~~~~v~~~~~~~~~ 301 (316)
+.++--||+|....-+
T Consensus 564 ~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 564 ASEDSWVYIWKNDSFN 579 (712)
T ss_pred eecCceEEEEeCCCCc
Confidence 9999999999975443
No 49
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=4.1e-29 Score=193.91 Aligned_cols=213 Identities=12% Similarity=0.257 Sum_probs=180.2
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+.+|+|||.++.++.+.+.. |...|..+.|+. .++++++.|.++.+||+....-
T Consensus 256 DsTvrvWDv~tge~l~tlih-----------HceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~------------ 309 (499)
T KOG0281|consen 256 DSTVRVWDVNTGEPLNTLIH-----------HCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTD------------ 309 (499)
T ss_pred CceEEEEeccCCchhhHHhh-----------hcceeEEEEEeC---CEEEEecCCceeEEEeccCchH------------
Confidence 56899999999998776643 788999999985 5999999999999999986541
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
.....+..+|...|+.+.|+. ++++++ +|.+|++|+..+. ..++++.+|.-+ |.|+.+
T Consensus 310 it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~----------------efvRtl~gHkRG--IAClQY- 368 (499)
T KOG0281|consen 310 ITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTC----------------EFVRTLNGHKRG--IACLQY- 368 (499)
T ss_pred HHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccce----------------eeehhhhccccc--ceehhc-
Confidence 134455589999999999864 588884 7999999999998 799999999966 999887
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC----------CCC
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----------FPP 230 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~----------~~~ 230 (316)
.++++++|+.|.+|++||+..|.+++.+++|..-|.++.| +.+.+++|+.||+|++||+.+.. +.+
T Consensus 369 --r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~ 444 (499)
T KOG0281|consen 369 --RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRT 444 (499)
T ss_pred --cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHh
Confidence 5899999999999999999999999999999999999999 56789999999999999987653 334
Q ss_pred CCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 231 LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
+..|...++.+. .|...+++.+.|.+|-+||+..+
T Consensus 445 lv~hsgRVFrLQ---FD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 445 LVEHSGRVFRLQ---FDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred hhhccceeEEEe---ecceEEEeccCCCeEEEEEcCCC
Confidence 445666665544 35568999999999999998876
No 50
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=1e-27 Score=186.98 Aligned_cols=247 Identities=16% Similarity=0.247 Sum_probs=192.6
Q ss_pred CCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160 30 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 109 (316)
Q Consensus 30 ~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 109 (316)
+..|+..|.+++.+|+. +++++|+.|..-.+|++.++. .+..+ .+|+..|+++.|+.+|.+||+
T Consensus 60 F~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~ge--------------~~~el-tgHKDSVt~~~FshdgtlLAT 123 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTGE--------------FAGEL-TGHKDSVTCCSFSHDGTLLAT 123 (399)
T ss_pred hhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCCc--------------ceeEe-cCCCCceEEEEEccCceEEEe
Confidence 45699999999999976 899999999999999999886 33333 899999999999999999999
Q ss_pred e-cCCcEEEEEcCCCC--------------------------CCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC
Q 021160 110 Y-NDELVYLFEKNMGL--------------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 162 (316)
Q Consensus 110 ~-~d~~i~iwd~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 162 (316)
+ .+|.|+||...++. +....++=.+.++.....+.+.||... +++=.| .|
T Consensus 124 GdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~--ct~G~f-~p 200 (399)
T KOG0296|consen 124 GDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP--CTCGEF-IP 200 (399)
T ss_pred cCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC--cccccc-cC
Confidence 7 69999999998875 111122222335555677888999876 888898 89
Q ss_pred CCcEEEEeccCCeEEEEeccCCeeEEEeec--------------------------------------------------
Q 021160 163 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-------------------------------------------------- 192 (316)
Q Consensus 163 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~-------------------------------------------------- 192 (316)
+|+.++++..||+|++|++.+++++..+..
T Consensus 201 dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~ 280 (399)
T KOG0296|consen 201 DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKP 280 (399)
T ss_pred CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccc
Confidence 999999999999999999999987764431
Q ss_pred -Cccc---eEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 193 -DRHV---VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 193 -~~~~---v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
+... |-++.|+..-++.|+|+.||+|.|||+...+++..-.|...++++.|.. ..++++++.+|.++.||.+++
T Consensus 281 ~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 281 SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred cchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeecccc
Confidence 1111 2223344455678999999999999999999888888999999988655 679999999999999999988
Q ss_pred CcceeE----------EeecccccccccCCCCeEEEEec
Q 021160 269 QTLAYR----------ERRYNAADFESDEEEGETYLLGF 297 (316)
Q Consensus 269 ~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~ 297 (316)
+.+... ..+|+...+.+.+++++..++..
T Consensus 359 ~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 359 QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 554221 34556666666666666666554
No 51
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=1.2e-26 Score=189.31 Aligned_cols=235 Identities=18% Similarity=0.288 Sum_probs=191.2
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 110 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 110 (316)
.+|+.+|++++|+|++ .++++++.||.+++|++.+++ ..... ..|...+..+.|+|++++++++
T Consensus 6 ~~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~~--------------~~~~~-~~~~~~i~~~~~~~~~~~l~~~ 69 (289)
T cd00200 6 KGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGE--------------LLRTL-KGHTGPVRDVAASADGTYLASG 69 (289)
T ss_pred cccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCCC--------------cEEEE-ecCCcceeEEEECCCCCEEEEE
Confidence 4689999999999998 899999999999999998764 11222 5677888999999999877774
Q ss_pred -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160 111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189 (316)
Q Consensus 111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~ 189 (316)
.++.|++|++..+ +....+..|... +.++.| .+++.++++++.++.+++||+.+++....
T Consensus 70 ~~~~~i~i~~~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 130 (289)
T cd00200 70 SSDKTIRLWDLETG----------------ECVRTLTGHTSY--VSSVAF-SPDGRILSSSSRDKTIKVWDVETGKCLTT 130 (289)
T ss_pred cCCCeEEEEEcCcc----------------cceEEEeccCCc--EEEEEE-cCCCCEEEEecCCCeEEEEECCCcEEEEE
Confidence 6999999999876 566777777755 999999 88888999988899999999999999988
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
+..|...+.+++|+|++.++++++.|+.|++||++..+ ...+..+...+..+. +.+++..+++++.++.+++|++...
T Consensus 131 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~~~~i~i~d~~~~ 209 (289)
T cd00200 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA-FSPDGEKLLSSSSDGTIKLWDLSTG 209 (289)
T ss_pred eccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEE-ECCCcCEEEEecCCCcEEEEECCCC
Confidence 98899999999999998888888889999999998766 555666666665555 7778888888888999999998753
Q ss_pred Ccc---------ee-EEeecccccccccCCCCeEEEEeccCCC
Q 021160 269 QTL---------AY-RERRYNAADFESDEEEGETYLLGFSDSD 301 (316)
Q Consensus 269 ~~~---------~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 301 (316)
+.. .. ..+.++...+.+...++.+++|+...+.
T Consensus 210 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 210 KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce
Confidence 221 11 1455666666666678889999987543
No 52
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=9.6e-27 Score=196.95 Aligned_cols=252 Identities=13% Similarity=0.153 Sum_probs=208.0
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEec-CCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~-dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
|...++.+-.-.....+.+. ..+|..++|+..| ..||.|+. =|++-||+..+...
T Consensus 287 G~f~LyelP~f~lih~LSis-----------~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEsY------------ 342 (893)
T KOG0291|consen 287 GEFGLYELPDFNLIHSLSIS-----------DQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSESY------------ 342 (893)
T ss_pred CeeEEEecCCceEEEEeecc-----------cceeeEEEecccC-CEEEEcCCccceEEEEEeeccce------------
Confidence 44556666555555555543 4579999999999 89998875 48999999986642
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
.... .+|...+++++++|||.++++| .||+|++||...+ -+..+|..|+.. |+.+.|
T Consensus 343 --VlKQ-QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg----------------fC~vTFteHts~--Vt~v~f- 400 (893)
T KOG0291|consen 343 --VLKQ-QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG----------------FCFVTFTEHTSG--VTAVQF- 400 (893)
T ss_pred --eeec-cccccceeeEEECCCCcEEEeccCCCcEEEEeccCc----------------eEEEEeccCCCc--eEEEEE-
Confidence 1112 6899999999999999999995 7999999999988 588999999987 999999
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCc-cceEEEEEcCCCCeEEEEeCCC-cEEEecCCCCC-CCCCCCCccc
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEK-TVKLWAPMPTD-FPPLPDNAEK 237 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~s~~~d~-~i~iwd~~~~~-~~~~~~~~~~ 237 (316)
+..++.+++.+.||+|+.||+...+..+++.... -...+++..|.|..++.|+.|. .|.+|++++++ +-.+.+|..+
T Consensus 401 ~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgP 480 (893)
T KOG0291|consen 401 TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGP 480 (893)
T ss_pred EecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCc
Confidence 8999999999999999999999999988887543 4567899999999988888776 69999999999 7778899999
Q ss_pred ceeeeecCCCCceeEEecCCCeEEEEEecccC--cc--------eeEEeecccccccccCCCCeEEEEeccCCC
Q 021160 238 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQ--TL--------AYRERRYNAADFESDEEEGETYLLGFSDSD 301 (316)
Q Consensus 238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 301 (316)
+..+. +++++..++++|-|.+||+|++-... .. .-..++|++..++...-+|.+-+||...+.
T Consensus 481 Vs~l~-f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 481 VSGLS-FSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred ceeeE-EccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 97766 88889999999999999999986541 11 112689999999999889999999877653
No 53
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=3.5e-26 Score=186.28 Aligned_cols=201 Identities=16% Similarity=0.288 Sum_probs=170.3
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS- 109 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s- 109 (316)
.||...|++++|-|.-|..+++|+.|+.|.+|+-.--+ .+.....|...|.|+.|+|||+++++
T Consensus 144 ~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFK---------------Fk~s~r~HskFV~~VRysPDG~~Fat~ 208 (603)
T KOG0318|consen 144 TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFK---------------FKSSFREHSKFVNCVRYSPDGSRFATA 208 (603)
T ss_pred eccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCee---------------eeecccccccceeeEEECCCCCeEEEe
Confidence 58999999999999999999999999999999865333 22233778899999999999998888
Q ss_pred ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceee---CCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee
Q 021160 110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 186 (316)
Q Consensus 110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~ 186 (316)
+.||++.+||=.++ ..+..+. +|... |..++| +||+..+++++.|.++++||+.+.++
T Consensus 209 gsDgki~iyDGktg----------------e~vg~l~~~~aHkGs--IfalsW-sPDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 209 GSDGKIYIYDGKTG----------------EKVGELEDSDAHKGS--IFALSW-SPDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred cCCccEEEEcCCCc----------------cEEEEecCCCCcccc--EEEEEE-CCCCceEEEecCCceEEEEEeeccce
Confidence 68999999999888 6777776 77766 999999 99999999999999999999887654
Q ss_pred EE-------------------------------------------EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160 187 VR-------------------------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 223 (316)
Q Consensus 187 ~~-------------------------------------------~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~ 223 (316)
+. .+.+|...|+++..+|++++|.+|+.||.|.-|+.
T Consensus 270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~ 349 (603)
T KOG0318|consen 270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS 349 (603)
T ss_pred EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEec
Confidence 43 55678899999999999999999999999999999
Q ss_pred CCCCCCCC--CCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160 224 MPTDFPPL--PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 224 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~ 267 (316)
..+....+ ..|...+..++.. +...+++.+-|.++++.++..
T Consensus 350 ~~g~~~~~~g~~h~nqI~~~~~~--~~~~~~t~g~Dd~l~~~~~~~ 393 (603)
T KOG0318|consen 350 GSGTSDRLAGKGHTNQIKGMAAS--ESGELFTIGWDDTLRVISLKD 393 (603)
T ss_pred CCccccccccccccceEEEEeec--CCCcEEEEecCCeEEEEeccc
Confidence 99885555 5677777666533 335788999999999998754
No 54
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=5.2e-27 Score=202.33 Aligned_cols=248 Identities=17% Similarity=0.240 Sum_probs=199.8
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+..+++||..+......- ..||.+.|.++++..-+ .++++|+.|.++++||+.+++
T Consensus 227 ~~tl~~~~~~~~~~i~~~----------l~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~------------- 282 (537)
T KOG0274|consen 227 DSTLHLWDLNNGYLILTR----------LVGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGE------------- 282 (537)
T ss_pred CceeEEeecccceEEEee----------ccCCCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCc-------------
Confidence 456788888765543221 13699999999998744 899999999999999999998
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
|...+ .+|...+.++...+ ..++++ .|.+|++|+++++ ..+..+.+|... |.++..
T Consensus 283 -C~~~l-~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~----------------~~l~l~~~h~~~--V~~v~~- 339 (537)
T KOG0274|consen 283 -CTHSL-QGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG----------------ACLNLLRGHTGP--VNCVQL- 339 (537)
T ss_pred -EEEEe-cCCCceEEEEEccC--ceEeeccCCceEEEEeccCc----------------ceEEEecccccc--EEEEEe-
Confidence 66666 78999999987643 356664 7999999999988 788888889877 999987
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC-C-CCCCCCCcccc
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-D-FPPLPDNAEKI 238 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~-~-~~~~~~~~~~~ 238 (316)
. +.++++|+.|++|++||+.+++++..+.+|...|.++.+.+. +.+++|+.|++|++||+++. + +.++.+|..-+
T Consensus 340 ~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v 416 (537)
T KOG0274|consen 340 D--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV 416 (537)
T ss_pred c--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc
Confidence 3 889999999999999999999999999999999999988765 78999999999999999998 4 88888887766
Q ss_pred eeeeecCCCCceeEEecCCCeEEEEEecccCcceeEEe---------ecccccccccCCCCeEEEEeccCCCC
Q 021160 239 MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRER---------RYNAADFESDEEEGETYLLGFSDSDA 302 (316)
Q Consensus 239 ~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~ 302 (316)
.... ..++.+++++.|++|++||..+++....... ......+.....++.+.+||+..+..
T Consensus 417 ~~l~---~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 417 SSLL---LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred cccc---cccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCch
Confidence 3333 3456999999999999999887654433311 11124455567788899998887754
No 55
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.5e-26 Score=199.18 Aligned_cols=252 Identities=11% Similarity=0.048 Sum_probs=178.4
Q ss_pred cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc-CCCeEEEe-cC
Q 021160 35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-ND 112 (316)
Q Consensus 35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d 112 (316)
..|.....++++ ..+++++.+.....|+...+...........+. ....+..+|.+.|.+++|+| ++++|+++ .|
T Consensus 21 ~~i~~~~~~~d~-~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~--~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 21 LNVTPSTALWDC-SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA--SNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred eccccccccCCC-CCcEeECCceEEEEEecCCceEEeeccccccCC--CCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 345556666665 456777777777788765443211111001000 11122378999999999999 77788875 79
Q ss_pred CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC-cEEEEeccCCeEEEEeccCCeeEEEee
Q 021160 113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLMV 191 (316)
Q Consensus 113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~~wd~~~~~~~~~~~ 191 (316)
++|++||+....... ....++..+.+|... |.+++| +|++ .+|++++.|+.|++||+.+++.+..+.
T Consensus 98 gtIkIWdi~~~~~~~---------~~~~~l~~L~gH~~~--V~~l~f-~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~ 165 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQ---------NISDPIVHLQGHTKK--VGIVSF-HPSAMNVLASAGADMVVNVWDVERGKAVEVIK 165 (493)
T ss_pred CEEEEEecCCCcccc---------ccCcceEEecCCCCc--EEEEEe-CcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc
Confidence 999999997641000 001245678888866 999999 7764 799999999999999999999999999
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEec----CCCeEEEEEec
Q 021160 192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLT----PDVIMHVLRLQ 266 (316)
Q Consensus 192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~d~~~~~w~~~ 266 (316)
+|...|.+++|+|++.+|++++.|++|++||+++++ +..+..|.........|.+++..+++++ .|+.+++||++
T Consensus 166 ~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 166 CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 999999999999999999999999999999999877 5566667655444444666656666543 47999999997
Q ss_pred ccCcceeE------------EeecccccccccC-CCCeEEEEeccCCC
Q 021160 267 RRQTLAYR------------ERRYNAADFESDE-EEGETYLLGFSDSD 301 (316)
Q Consensus 267 ~~~~~~~~------------~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 301 (316)
+...+... .+.++...+..+. .++.|.+|++.++.
T Consensus 246 ~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 246 KMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred CCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 64332211 2344555555443 58889999997764
No 56
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.8e-27 Score=182.22 Aligned_cols=223 Identities=16% Similarity=0.246 Sum_probs=175.0
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccC----CCCCCCCceecccccccCCCcccEEEEEEccCCCe
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS----PISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL 106 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 106 (316)
..|+.++.+.+|+|+| .++|+|+.|..|+|.|++..-... .+.....-.--.++++ -.|.+.|+++.|+|...+
T Consensus 109 t~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPRETI 186 (430)
T ss_pred eecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecchhhe
Confidence 3589999999999999 899999999999999997321100 0000000010112233 678999999999999999
Q ss_pred EEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe
Q 021160 107 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 185 (316)
Q Consensus 107 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~ 185 (316)
|+++ .|++|++||.... ...+.++.......+.++.| +|.|.+|+.|.+...+++||+++-+
T Consensus 187 LiS~srD~tvKlFDfsK~----------------saKrA~K~~qd~~~vrsiSf-HPsGefllvgTdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKT----------------SAKRAFKVFQDTEPVRSISF-HPSGEFLLVGTDHPTLRLYDVNTYQ 249 (430)
T ss_pred EEeccCCCeEEEEecccH----------------HHHHHHHHhhccceeeeEee-cCCCceEEEecCCCceeEEecccee
Confidence 9996 6999999999765 23333443333345999999 8999999999999999999999988
Q ss_pred eEEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCC-CCcccceeeeecCCCCceeEEecCCCeE
Q 021160 186 LVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP-DNAEKIMKANKQGREDHSRITLTPDVIM 260 (316)
Q Consensus 186 ~~~~~---~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~d~~~ 260 (316)
+.... ..|++.|+++.+++.+++.++++.||.|++||--+.+ +.++. .|...-+..+.+..++.++++.+.|..+
T Consensus 250 cfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v 329 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV 329 (430)
T ss_pred EeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee
Confidence 86554 3588999999999999999999999999999976655 55553 4666666777799999999999999999
Q ss_pred EEEEecccCcce
Q 021160 261 HVLRLQRRQTLA 272 (316)
Q Consensus 261 ~~w~~~~~~~~~ 272 (316)
++|.+.++..+.
T Consensus 330 kLWEi~t~R~l~ 341 (430)
T KOG0640|consen 330 KLWEISTGRMLK 341 (430)
T ss_pred eeeeecCCceEE
Confidence 999998875543
No 57
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=2e-26 Score=187.63 Aligned_cols=180 Identities=16% Similarity=0.262 Sum_probs=136.4
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 110 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 110 (316)
.+|..+++-..|+|.| .|+|+|...|+|||||....+. .++..+..-.++|..++|+.+++.+++.
T Consensus 56 tEH~~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~h-------------iLKnef~v~aG~I~Di~Wd~ds~RI~av 121 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKEH-------------ILKNEFQVLAGPIKDISWDFDSKRIAAV 121 (603)
T ss_pred ccccceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcce-------------eeeeeeeecccccccceeCCCCcEEEEE
Confidence 4688899999999999 8999999999999999875331 1222223446789999999999866663
Q ss_pred cC-----CcEEEEEcCCCCCCCC-------------------------ccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 111 ND-----ELVYLFEKNMGLGPSP-------------------------LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 111 ~d-----~~i~iwd~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
.+ |.+.+||.-+..+... ..+....-+..+....+..|.. .|.++.|
T Consensus 122 GEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk--FV~~VRy- 198 (603)
T KOG0318|consen 122 GEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSK--FVNCVRY- 198 (603)
T ss_pred ecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccc--ceeeEEE-
Confidence 32 3466777654331111 1111111222233344455664 4999999
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEee---cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
+|||.++++.+.||.+.+||-.+|+.+..+. +|++.|.+++|+||+..|+|++.|.+++|||+.+.+
T Consensus 199 sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 199 SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence 9999999999999999999999999999997 899999999999999999999999999999987654
No 58
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2e-27 Score=200.87 Aligned_cols=211 Identities=16% Similarity=0.224 Sum_probs=179.3
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec-ccccccCCCcccEEEEEEccCCCeEEEe
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF-CPRHLIGKNNIHITGLAYSNTSELLISY 110 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 110 (316)
.|.+.|.+++..|++ ..+++|+.|.+|++||..--.- .......+-.+ ..++ -.-...|.|+++||||++|+.+
T Consensus 452 AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~--~~gt~~k~lsl~~~rt--Lel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 452 AHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVS--VPGTQKKVLSLKHTRT--LELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred ccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEec--cCcccceeeeeccceE--EeccccEEEEEEcCCCcEEEEE
Confidence 589999999999999 8999999999999999863220 00000010000 0011 1235689999999999999987
Q ss_pred -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160 111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189 (316)
Q Consensus 111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~ 189 (316)
-|.+|++|-+++. +..-.+.||.-+ |.|+.. +|++.+++||+.|.+|++|-++-|.|-..
T Consensus 527 LLdnTVkVyflDtl----------------KFflsLYGHkLP--V~smDI-S~DSklivTgSADKnVKiWGLdFGDCHKS 587 (888)
T KOG0306|consen 527 LLDNTVKVYFLDTL----------------KFFLSLYGHKLP--VLSMDI-SPDSKLIVTGSADKNVKIWGLDFGDCHKS 587 (888)
T ss_pred eccCeEEEEEecce----------------eeeeeecccccc--eeEEec-cCCcCeEEeccCCCceEEeccccchhhhh
Confidence 6999999999887 677788999977 999999 99999999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160 190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~ 267 (316)
+.+|...|.++.|-|....+.++|.|+.|+-||-..-. ++.+.+|...+..++ ..++|.++++++.|..+++|....
T Consensus 588 ~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLa-v~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 588 FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLA-VSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeE-EcCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999998889999999999999988876 889999999998887 788999999999999999998544
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=5.3e-27 Score=183.84 Aligned_cols=232 Identities=12% Similarity=0.251 Sum_probs=178.1
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCC-------
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS------- 74 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~------- 74 (316)
+-++++|-.+..+.+-... .+-.||+..|-+++..+++ ..+++|+.|.+|.+|+..+... .+.+
T Consensus 168 Dqtl~Lw~~~~~~~~~~~~-------~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rr 238 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKVKAL-------KVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEE-DELESSSNRRR 238 (423)
T ss_pred CceEEEEEecCchhhhhHH-------hHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCcc-ccccccchhhh
Confidence 4567777776554321110 0112799999999999999 8999999999999999432211 0000
Q ss_pred ----CCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC
Q 021160 75 ----SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN 150 (316)
Q Consensus 75 ----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (316)
.........+.....+|..+|.++.|++.+..+.++.|.+|+.||+.++ .....+.+..
T Consensus 239 k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg----------------~~~~~~~~~k- 301 (423)
T KOG0313|consen 239 KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETG----------------GLKSTLTTNK- 301 (423)
T ss_pred hhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecc----------------cceeeeecCc-
Confidence 0011122233444589999999999999555555578999999999998 5555555443
Q ss_pred CceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe---eEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCC
Q 021160 151 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK---LVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT 226 (316)
Q Consensus 151 ~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~---~~~~~~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~ 226 (316)
.+.++++ +|...+|++|+.|..+++||.+++. ..+++.+|...|.++.|+|...+ |++++.|+++++||+++.
T Consensus 302 --sl~~i~~-~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 302 --SLNCISY-SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred --ceeEeec-ccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 3899998 8999999999999999999998753 45678899999999999998876 999999999999999987
Q ss_pred C--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160 227 D--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 264 (316)
Q Consensus 227 ~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~ 264 (316)
+ +..+.+|.+.++...|+. +..+++|+.|..++++.
T Consensus 379 k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 379 KAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADNKLRIFK 416 (423)
T ss_pred CCcceeeccCCceEEEEeccC--CceEEeccCcceEEEec
Confidence 6 888899999998888644 46899999999999985
No 60
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=5.1e-26 Score=173.30 Aligned_cols=221 Identities=14% Similarity=0.187 Sum_probs=177.4
Q ss_pred CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
++-.|.+|++... ++..-. .+||+++|..+.|.+++ +.+++++.|.+|+.||.++++
T Consensus 67 ~Dr~I~LWnv~gd-ceN~~~---------lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~tG~------------ 123 (338)
T KOG0265|consen 67 SDRAIVLWNVYGD-CENFWV---------LKGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAETGK------------ 123 (338)
T ss_pred CcceEEEEecccc-ccceee---------eccccceeEeeeeccCC-CEEEEecCCceEEEEecccce------------
Confidence 3557888886543 211111 23699999999999999 899999999999999999998
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEE-Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEE
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLI-SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN 158 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 158 (316)
+.+.. .+|..-++.+.-+.-|..++ ++ .|+++++||+++. ..++++..... ++++.
T Consensus 124 --~~rk~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k----------------~~~~t~~~kyq---ltAv~ 181 (338)
T KOG0265|consen 124 --RIRKH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK----------------EAIKTFENKYQ---LTAVG 181 (338)
T ss_pred --eeehh-ccccceeeecCccccCCeEEEecCCCceEEEEeeccc----------------chhhcccccee---EEEEE
Confidence 44444 78889899988555565444 44 5999999999987 56666654332 89999
Q ss_pred EecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-----CCCCCC
Q 021160 159 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----FPPLPD 233 (316)
Q Consensus 159 ~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~ 233 (316)
| ...+..+.+|+-|+.|++||++.......+.+|...|+.+..+|+|.++.+-+.|.++++||++... +..+.+
T Consensus 182 f-~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g 260 (338)
T KOG0265|consen 182 F-KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG 260 (338)
T ss_pred e-cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec
Confidence 9 8889999999999999999999999999999999999999999999999999999999999987542 222333
Q ss_pred Cc----ccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 234 NA----EKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 234 ~~----~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
|. ...+.+. |+++++.+-+++.|..+.+||....
T Consensus 261 ~~hnfeknlL~cs-wsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 261 HIHNFEKNLLKCS-WSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred chhhhhhhcceee-ccCCCCccccccccceEEEeecccc
Confidence 32 2234455 8899999999999999999997764
No 61
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=3.3e-28 Score=187.46 Aligned_cols=226 Identities=14% Similarity=0.193 Sum_probs=184.0
Q ss_pred CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
++|.+.|||..+++..+-+... ....+-.|..+|.|++|+.+. ..+|+|+.||.|++|.++++.
T Consensus 233 vDGFiEVWny~~GKlrKDLkYQ---Aqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~tG~------------ 296 (508)
T KOG0275|consen 233 VDGFIEVWNYTTGKLRKDLKYQ---AQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIETGQ------------ 296 (508)
T ss_pred ccceeeeehhccchhhhhhhhh---hhcceeecccceEEEeecccH-HHhhccCcCCcEEEEEEecch------------
Confidence 4799999999988765444322 122334578899999999998 899999999999999999999
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
|.+.+..+|...|+|+.|+.|+..+.+ +.|.++++.-+..+ +.++.|.+|... |+...|
T Consensus 297 --ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG----------------K~LKEfrGHsSy--vn~a~f 356 (508)
T KOG0275|consen 297 --CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG----------------KCLKEFRGHSSY--VNEATF 356 (508)
T ss_pred --HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc----------------hhHHHhcCcccc--ccceEE
Confidence 777776799999999999999986666 57999999999988 899999999966 999999
Q ss_pred ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecC----------------------------------------------
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD---------------------------------------------- 193 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~---------------------------------------------- 193 (316)
.++|..+++++.||+|++|+.++.+++.+++..
T Consensus 357 -t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkR 435 (508)
T KOG0275|consen 357 -TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKR 435 (508)
T ss_pred -cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCc
Confidence 999999999999999999998877655433210
Q ss_pred -ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160 194 -RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 264 (316)
Q Consensus 194 -~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~ 264 (316)
.+...+.+.+|.|.++.+.++|+.++-+...+++ ..+++.|...++.+. ..|..+++++.+.||.+++|.
T Consensus 436 EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~-HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 436 EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLT-HHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccc-cCcccchhhhhcccchhhhcC
Confidence 1233456678888888888888888888888777 566777777777776 667777888888888888883
No 62
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=7.1e-26 Score=191.63 Aligned_cols=260 Identities=13% Similarity=0.159 Sum_probs=206.9
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF 82 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~ 82 (316)
+.+++|+..+.++.+.+.+. -+.+..|.|.+ +++++|...|.+.+||+.+..+
T Consensus 394 ~SikiWn~~t~kciRTi~~~-------------y~l~~~Fvpgd-~~Iv~G~k~Gel~vfdlaS~~l------------- 446 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIRTITCG-------------YILASKFVPGD-RYIVLGTKNGELQVFDLASASL------------- 446 (888)
T ss_pred CcEEEEEccCcceeEEeccc-------------cEEEEEecCCC-ceEEEeccCCceEEEEeehhhh-------------
Confidence 67999999988887666543 57899999987 9999999999999999998762
Q ss_pred ccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEec
Q 021160 83 CPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG 161 (316)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 161 (316)
...+ .+|.+.|++++.+|+++.+++ +.|.+|++||..-... .+.... .+-..+..+++. -.+ .|.|+++ |
T Consensus 447 -~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~-~~gt~~--k~lsl~~~rtLe-l~d--dvL~v~~-S 517 (888)
T KOG0306|consen 447 -VETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS-VPGTQK--KVLSLKHTRTLE-LED--DVLCVSV-S 517 (888)
T ss_pred -hhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-cCcccc--eeeeeccceEEe-ccc--cEEEEEE-c
Confidence 2233 689999999999999997777 5799999999864421 000000 000001112222 222 3999999 9
Q ss_pred CCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCccccee
Q 021160 162 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMK 240 (316)
Q Consensus 162 ~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~ 240 (316)
||+++|+.+--|.+|++|-+.+-+....+.||.-+|.+|..+|+++.++|||.|+.|+||-+.=+. ...+.+|.+.++.
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~ 597 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS 597 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeE
Confidence 999999999999999999999999999999999999999999999999999999999999998776 6778899999988
Q ss_pred eeecCCCCceeEEecCCCeEEEEEecc---------cCcceeE-EeecccccccccCCCCeEEEEeccC
Q 021160 241 ANKQGREDHSRITLTPDVIMHVLRLQR---------RQTLAYR-ERRYNAADFESDEEEGETYLLGFSD 299 (316)
Q Consensus 241 ~~~~~~~~~~~~s~~~d~~~~~w~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~ 299 (316)
.. +-|+...+++++.|+.++.||-.. +...++. ...|.+..+.+.+.|-.+-+|.-.+
T Consensus 598 V~-F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 598 VQ-FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EE-EcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 87 677889999999999999997443 3344444 6678888888877777788777665
No 63
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-25 Score=187.73 Aligned_cols=253 Identities=17% Similarity=0.243 Sum_probs=202.2
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 83 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~ 83 (316)
.|++|+-.+.+...+.... ...|+++.|+++| .+|++|..+|.|.|||..+.+ .
T Consensus 198 ~vylW~~~s~~v~~l~~~~-----------~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k--------------~ 251 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG-----------EELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQK--------------K 251 (484)
T ss_pred eEEEEecCCCceEEeEecC-----------CCceEEEEECCCC-CEEEEeecCCeEEEEehhhcc--------------c
Confidence 6899999888765565553 5589999999999 899999999999999998776 4
Q ss_pred cccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC
Q 021160 84 PRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 162 (316)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 162 (316)
...+...|...|.+++|+ +..+.++ .|+.|..+|++... .....+.+|... |..++| ++
T Consensus 252 ~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~---------------~~~~~~~~H~qe--VCgLkw-s~ 311 (484)
T KOG0305|consen 252 TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ---------------HVVSTLQGHRQE--VCGLKW-SP 311 (484)
T ss_pred cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch---------------hhhhhhhcccce--eeeeEE-CC
Confidence 445534499999999998 4566665 79999999998872 222347888866 999999 99
Q ss_pred CCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCC-CeEEEEe--CCCcEEEecCCCCCCCCCCCCcccce
Q 021160 163 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI-PMFATCG--IEKTVKLWAPMPTDFPPLPDNAEKIM 239 (316)
Q Consensus 163 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~ 239 (316)
++.++|+|+.|+.+.|||....+++..+..|...|..++|+|-. ..||+|+ .|+.|++||..++...........|.
T Consensus 312 d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVc 391 (484)
T KOG0305|consen 312 DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVC 391 (484)
T ss_pred CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCcee
Confidence 99999999999999999998888899999999999999999954 4578765 89999999999988444444556677
Q ss_pred eeeecCCCCceeEE-ecCCCeEEEEEecccC----------cceeEEeecccccccccCCCCeEEEEeccCCCC
Q 021160 240 KANKQGREDHSRIT-LTPDVIMHVLRLQRRQ----------TLAYRERRYNAADFESDEEEGETYLLGFSDSDA 302 (316)
Q Consensus 240 ~~~~~~~~~~~~~s-~~~d~~~~~w~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 302 (316)
.+.|.....+++.+ |..+..|.+|+..+.. ...+...+|++..+.++..|+.+-+|.+.+.+.
T Consensus 392 sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~ 465 (484)
T KOG0305|consen 392 SLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDERP 465 (484)
T ss_pred eEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCCC
Confidence 77744445555555 4467899999985422 122337899999999999999999999877543
No 64
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=1.4e-26 Score=185.47 Aligned_cols=253 Identities=19% Similarity=0.244 Sum_probs=195.8
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE-
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS- 109 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s- 109 (316)
-|.+.|+.+..-|+++.++|+++..+.+.|||..+..-.. .....+.+...+.+|...-.+++|++... .|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~-----~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKP-----KASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcc-----cccccCCCceEEEeecccccccccccccceeEeec
Confidence 4899999999999999999999999999999997654211 11112233334478888788899999765 5555
Q ss_pred ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc--CCeeE
Q 021160 110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK--GGKLV 187 (316)
Q Consensus 110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~--~~~~~ 187 (316)
+.|++|++||+...... -+...+...+.+|... |..++|+..+..+++++++|+.+.|||++ +.++.
T Consensus 197 ~~d~~i~lwdi~~~~~~---------~~~~~p~~~~~~h~~~--VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKE---------DKVVDPKTIFSGHEDV--VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred cCCCcEEEEeccccccC---------CccccceEEeecCCcc--eehhhccccchhhheeecCCCeEEEEEcCCCCCCCc
Confidence 68999999999876311 0112456678899976 99999976678889999999999999999 56667
Q ss_pred EEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160 188 RLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 264 (316)
Q Consensus 188 ~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~ 264 (316)
....+|.+.|++++|+|.+. .|||||.|++|++||++..+ +.++.+|...++++.|.+.....+++.+.|+.+++||
T Consensus 266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 77889999999999999665 49999999999999999865 8899999999999985555788999999999999999
Q ss_pred ecccCcce-------------eE-----------Eeec-ccccccccCCCCeEEEEeccCC
Q 021160 265 LQRRQTLA-------------YR-----------ERRY-NAADFESDEEEGETYLLGFSDS 300 (316)
Q Consensus 265 ~~~~~~~~-------------~~-----------~~~~-~~~~~~~~~~~~~v~~~~~~~~ 300 (316)
+.+-.... +. .+.| ..-.+.+..+++.+.+|..++.
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 97521111 11 2233 2344566788889999998854
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.2e-26 Score=182.83 Aligned_cols=198 Identities=16% Similarity=0.249 Sum_probs=162.8
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEe-c
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-N 111 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~ 111 (316)
+..|.+++|-.+| .++|+|...|.|++||+.+.. ..+.+ .+|..++..+.|+|++. .++++ .
T Consensus 68 k~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r~--------------iLR~~-~ah~apv~~~~f~~~d~t~l~s~sD 131 (487)
T KOG0310|consen 68 KDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSRV--------------ILRQL-YAHQAPVHVTKFSPQDNTMLVSGSD 131 (487)
T ss_pred ccceeEEEeecCC-eEEEccCCcCcEEEeccccHH--------------HHHHH-hhccCceeEEEecccCCeEEEecCC
Confidence 6689999999999 999999999999999966532 23333 88999999999999876 66666 5
Q ss_pred CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC-eeEEEe
Q 021160 112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLM 190 (316)
Q Consensus 112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~-~~~~~~ 190 (316)
|+.+++||+.+. .....+.+|++. |.+.+|.+.++..+++|+.||.|++||.++. ..+.++
T Consensus 132 d~v~k~~d~s~a----------------~v~~~l~~htDY--VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el 193 (487)
T KOG0310|consen 132 DKVVKYWDLSTA----------------YVQAELSGHTDY--VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL 193 (487)
T ss_pred CceEEEEEcCCc----------------EEEEEecCCcce--eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe
Confidence 778899999887 444478899976 9999995555668999999999999999976 555555
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
.|..+|.++.+-|.|..||+++ -..|++||+.++. +..+..|.+.+.++. ...++..|++++-|+.++++++.+-
T Consensus 194 -nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~-l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 194 -NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLR-LASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred -cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEE-eecCCceEeecccccceEEEEccce
Confidence 4889999999999999999998 4689999998554 445555888886666 6668899999999999999995543
No 66
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=3.2e-25 Score=191.98 Aligned_cols=221 Identities=14% Similarity=0.135 Sum_probs=162.4
Q ss_pred EecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC-CCeEEEe-cCCcEEEEEcCCCCCCCCcc
Q 021160 53 GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISY-NDELVYLFEKNMGLGPSPLS 130 (316)
Q Consensus 53 g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 130 (316)
|+.++.+++|+..... ....+ .+|...|.+++|+|+ +.+|+++ .|++|++||+........
T Consensus 50 GG~~gvI~L~~~~r~~--------------~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-- 112 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP--------------PVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-- 112 (568)
T ss_pred CCceeEEEeeecCCCc--------------eEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--
Confidence 5567888888876442 22222 789999999999997 6788885 799999999976410000
Q ss_pred CCccccccCCCcceeeCCcCCceeeeEEEecCCCcE-EEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeE
Q 021160 131 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF 209 (316)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 209 (316)
....+...+.+|... |.+++| +|++.. +++++.|+.|++||+++++.+..+. |...|.+++|+|+|.+|
T Consensus 113 ------~i~~p~~~L~gH~~~--V~sVaf-~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lL 182 (568)
T PTZ00420 113 ------EIKDPQCILKGHKKK--ISIIDW-NPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLL 182 (568)
T ss_pred ------ccccceEEeecCCCc--EEEEEE-CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEE
Confidence 000233467788866 999999 888775 5789999999999999998777775 56789999999999999
Q ss_pred EEEeCCCcEEEecCCCCC-CCCCCCCcccceeeee----cCCCCceeEEecCCC----eEEEEEecccCcceeE-E----
Q 021160 210 ATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANK----QGREDHSRITLTPDV----IMHVLRLQRRQTLAYR-E---- 275 (316)
Q Consensus 210 ~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~d~----~~~~w~~~~~~~~~~~-~---- 275 (316)
++++.|+.|+|||++++. +.++.+|...+..... +++++.++++++.++ .+++||++....+... .
T Consensus 183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~ 262 (568)
T PTZ00420 183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA 262 (568)
T ss_pred EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC
Confidence 999999999999999887 5667777765433332 346778888877664 7999999864333222 1
Q ss_pred --------eecccccccccCCCCeEEEEeccCC
Q 021160 276 --------RRYNAADFESDEEEGETYLLGFSDS 300 (316)
Q Consensus 276 --------~~~~~~~~~~~~~~~~v~~~~~~~~ 300 (316)
..+++..+.++..++.+++|++..+
T Consensus 263 ~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 263 SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred ccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 1223455666778888999998654
No 67
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.4e-27 Score=198.08 Aligned_cols=228 Identities=14% Similarity=0.224 Sum_probs=178.8
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.|.|-+||+......+.+.. +..|+..++++.|++..+++|++|+.||.|++||++..+-
T Consensus 109 nG~i~vWdlnk~~rnk~l~~--------f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S------------ 168 (839)
T KOG0269|consen 109 NGVISVWDLNKSIRNKLLTV--------FNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS------------ 168 (839)
T ss_pred CCcEEEEecCccccchhhhH--------hhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc------------
Confidence 48899999986332222221 1238899999999999999999999999999999997752
Q ss_pred cccccccCCCcccEEEEEEccCC-CeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTS-ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
..+. .+....|..|+|+|.. ..++++ ..|.+++||++... +....+..|.+. |.++.|
T Consensus 169 --~~t~-~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~---------------r~~~k~~AH~Gp--V~c~nw 228 (839)
T KOG0269|consen 169 --KSTF-RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD---------------RCEKKLTAHNGP--VLCLNW 228 (839)
T ss_pred --cccc-cccchhhhceeeccCCCceEEEecCCceEEEeeccCch---------------hHHHHhhcccCc--eEEEee
Confidence 1111 4567889999999964 466665 78999999999873 466778889977 999999
Q ss_pred ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecC-ccceEEEEEcCCCCe-EEEEe--CCCcEEEecCCCCC--CCCCCC
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-RHVVNQLEPHPHIPM-FATCG--IEKTVKLWAPMPTD--FPPLPD 233 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~-l~s~~--~d~~i~iwd~~~~~--~~~~~~ 233 (316)
+|++.+||+|+.|+.|+|||+.+++.-....-+ ..+|..+.|-|..++ ||+++ .|-.|+|||++... ..++..
T Consensus 229 -hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e 307 (839)
T KOG0269|consen 229 -HPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE 307 (839)
T ss_pred -cCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec
Confidence 899999999999999999999866543333323 368999999998877 77776 67899999999876 566777
Q ss_pred CcccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160 234 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 270 (316)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~ 270 (316)
|...+..++|.+.+...+.+++.|+++..-.++....
T Consensus 308 H~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 308 HTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred cCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 8887777776666888999999999887666655433
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.7e-26 Score=188.12 Aligned_cols=221 Identities=15% Similarity=0.211 Sum_probs=188.3
Q ss_pred CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
+.|.|.|||..+.+..+.+..+ |...|.+++|+. ..+.+|+.|+.|..+|++..+.
T Consensus 237 ~~g~v~iwD~~~~k~~~~~~~~----------h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~----------- 292 (484)
T KOG0305|consen 237 SDGTVQIWDVKEQKKTRTLRGS----------HASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQH----------- 292 (484)
T ss_pred cCCeEEEEehhhccccccccCC----------cCceeEEEeccC---ceEEEecCCCcEEEEEEecchh-----------
Confidence 4689999999887766655543 788999999993 6899999999999999998762
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
......+|...|..++|+++++++|++ .|+.+.|||.... .+...+..|... |..++|
T Consensus 293 ---~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~----------------~p~~~~~~H~aA--VKA~aw 351 (484)
T KOG0305|consen 293 ---VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP----------------EPKFTFTEHTAA--VKALAW 351 (484)
T ss_pred ---hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc----------------cccEEEecccee--eeEeee
Confidence 222348899999999999999999995 7999999999766 688899999977 999999
Q ss_pred ecCCCcEEEEec--cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe--CCCcEEEecCCCCC-CCCCCCC
Q 021160 160 FGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTD-FPPLPDN 234 (316)
Q Consensus 160 ~~~~~~~l~~~~--~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~--~d~~i~iwd~~~~~-~~~~~~~ 234 (316)
.+-...+||+|+ .|+.|++||..+++.+..+.. .+.|.+|.|++..+-|+++. .+..|.||+..+.+ +..+.+|
T Consensus 352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH 430 (484)
T KOG0305|consen 352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH 430 (484)
T ss_pred CCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC
Confidence 555677888875 599999999999999888764 46899999999987766553 56689999998877 7888999
Q ss_pred cccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 235 AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
...++.++ +++++..+++++.|.++++|++-..
T Consensus 431 ~~RVl~la-~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 431 TSRVLYLA-LSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cceeEEEE-ECCCCCEEEEecccCcEEeccccCC
Confidence 99998888 8999999999999999999998764
No 69
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-25 Score=176.86 Aligned_cols=250 Identities=13% Similarity=0.176 Sum_probs=196.9
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 110 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 110 (316)
.|..+|.-+.|+++| ++||+++.|.+..+|.+..... +.......+|..+|..+.|+||.++|+++
T Consensus 222 ~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~------------~kl~~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVH------------FKLKKTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred hCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcc------------eeeeeeeecccCceEEEEECCCCCeEEecC
Confidence 489999999999999 9999999999999999864431 23334448999999999999999987774
Q ss_pred cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160 111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 190 (316)
Q Consensus 111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~ 190 (316)
.|..+.+||+.++ .....+... .+..+.+++| .|||..+++|+.|+.+..||+. |..+...
T Consensus 289 ~~e~~~lwDv~tg----------------d~~~~y~~~-~~~S~~sc~W-~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W 349 (519)
T KOG0293|consen 289 FDEVLSLWDVDTG----------------DLRHLYPSG-LGFSVSSCAW-CPDGFRFVTGSPDRTIIMWDLD-GNILGNW 349 (519)
T ss_pred chHheeeccCCcc----------------hhhhhcccC-cCCCcceeEE-ccCCceeEecCCCCcEEEecCC-cchhhcc
Confidence 6888999999998 455555432 2234899999 8999999999999999999997 5555555
Q ss_pred ecC-ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160 191 VGD-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 269 (316)
Q Consensus 191 ~~~-~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~ 269 (316)
++- ...|.+++.++||+++++...|..|++++.++.....+-....++++.. .+.++.+++.--.+..+++||+++..
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~-iS~d~k~~LvnL~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFS-ISKDGKLALVNLQDQEIHLWDLEENK 428 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEE-EcCCCcEEEEEcccCeeEEeecchhh
Confidence 442 3579999999999999999999999999998876443433445565554 78899999999999999999998532
Q ss_pred c--------ce-e---EEeec-ccccccccCCCCeEEEEeccCCCCCCCCCCcceeee
Q 021160 270 T--------LA-Y---RERRY-NAADFESDEEEGETYLLGFSDSDASSEGGGNQRECI 314 (316)
Q Consensus 270 ~--------~~-~---~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 314 (316)
. .. | .+|.. +...++++++|+.||+|+-..++--++..|-.+.||
T Consensus 429 lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vN 486 (519)
T KOG0293|consen 429 LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVN 486 (519)
T ss_pred HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceee
Confidence 1 11 1 25544 448899999999999999999887666666666665
No 70
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.8e-25 Score=174.84 Aligned_cols=235 Identities=12% Similarity=0.161 Sum_probs=187.7
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 110 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 110 (316)
||..+|..+.|+|+. +++++++.|..+.+||+.++. +......++...+.+.+|.|||..+++|
T Consensus 267 gh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd--------------~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs 331 (519)
T KOG0293|consen 267 GHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGD--------------LRHLYPSGLGFSVSSCAWCPDGFRFVTGS 331 (519)
T ss_pred cccCceEEEEECCCC-CeEEecCchHheeeccCCcch--------------hhhhcccCcCCCcceeEEccCCceeEecC
Confidence 699999999999999 899999999999999999998 3333335567889999999999877775
Q ss_pred cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160 111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 190 (316)
Q Consensus 111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~ 190 (316)
.|+++..||++.. ......+... ..|.+++. ++||.++++.+.|..+++++.++......+
T Consensus 332 ~dr~i~~wdlDgn-----------------~~~~W~gvr~-~~v~dlai-t~Dgk~vl~v~~d~~i~l~~~e~~~dr~li 392 (519)
T KOG0293|consen 332 PDRTIIMWDLDGN-----------------ILGNWEGVRD-PKVHDLAI-TYDGKYVLLVTVDKKIRLYNREARVDRGLI 392 (519)
T ss_pred CCCcEEEecCCcc-----------------hhhccccccc-ceeEEEEE-cCCCcEEEEEecccceeeechhhhhhhccc
Confidence 6999999999875 4455555543 34999998 999999999999999999998876555444
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccc--eeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160 191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI--MKANKQGREDHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~d~~~~~w~~~~ 267 (316)
.. ..+|++++.|.+++++++.=.+..+++||++... +....+|...- +..+.-..+..++++|+.|+.|++|+..+
T Consensus 393 se-~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 393 SE-EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred cc-cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC
Confidence 43 4689999999999998888889999999999766 56666766543 33332233668999999999999999887
Q ss_pred cCcceeE----------Eeec-ccccccccCCCCeEEEEeccCCC
Q 021160 268 RQTLAYR----------ERRY-NAADFESDEEEGETYLLGFSDSD 301 (316)
Q Consensus 268 ~~~~~~~----------~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 301 (316)
++.+... .+.| +...+++.++||+|-+|+.++.+
T Consensus 472 gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~~ 516 (519)
T KOG0293|consen 472 GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDNN 516 (519)
T ss_pred CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCccc
Confidence 7544321 3444 56788999999999999988764
No 71
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=8.3e-26 Score=176.35 Aligned_cols=235 Identities=11% Similarity=0.127 Sum_probs=176.8
Q ss_pred CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
|+|.|+||+..++.....+... -..+.=+.|||.+ ..|++|+.||.+-+|.+.++.
T Consensus 126 msG~v~v~~~stg~~~~~~~~e-----------~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~------------ 181 (399)
T KOG0296|consen 126 MSGKVLVFKVSTGGEQWKLDQE-----------VEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQA------------ 181 (399)
T ss_pred CCccEEEEEcccCceEEEeecc-----------cCceEEEEecccc-cEEEeecCCCcEEEEECCCcc------------
Confidence 7899999999988765444311 3367889999988 899999999999999999753
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCcc------CCccc------------------
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLS------LSPED------------------ 135 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~------~~~~~------------------ 135 (316)
...+..+|..++++=.|.|+|+.++++ .||+|++||+.++....... .+.-.
T Consensus 182 ---~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~ 258 (399)
T KOG0296|consen 182 ---LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVAC 258 (399)
T ss_pred ---eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEE
Confidence 223347899999999999999988885 79999999998874100000 00000
Q ss_pred ---cccCCCcceee--------CCcCC-ceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEc
Q 021160 136 ---LQKREEPQVYS--------GHRNS-QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH 203 (316)
Q Consensus 136 ---~~~~~~~~~~~--------~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~ 203 (316)
..+.+.+.... .+... ..|.++.+ +..=.+.|+|+-||+|.|||+...++...+ .|...|..+.|-
T Consensus 259 ~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~-ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~ 336 (399)
T KOG0296|consen 259 GVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS-SSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWL 336 (399)
T ss_pred EEccccceEEEecCCCCccccccchhhhhhhhhccc-ccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEc
Confidence 11111111111 11111 11333333 445567899999999999999977765555 488899999999
Q ss_pred CCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160 204 PHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 266 (316)
Q Consensus 204 p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~ 266 (316)
+ ..+|++++.+|.|+.||.+++. ..+..+|...|+..+ .+++.+++++++.|++.+++.+.
T Consensus 337 ~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~-ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 337 N-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA-LSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred C-cchheeeccCceEEeeeccccceEEEEecCchheeEEE-EcCCCcEEEEecCCCeEEEEecC
Confidence 8 7889999999999999999998 778899999998888 78899999999999999999864
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2.6e-25 Score=191.91 Aligned_cols=215 Identities=17% Similarity=0.285 Sum_probs=180.3
Q ss_pred CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
.+.+++|||+.+..+...+.. |...|.++...+ .++++|+.|.+|++|++.++.
T Consensus 269 ~D~t~rvWd~~sg~C~~~l~g-----------h~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~------------ 322 (537)
T KOG0274|consen 269 TDKTERVWDCSTGECTHSLQG-----------HTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGA------------ 322 (537)
T ss_pred cCCcEEeEecCCCcEEEEecC-----------CCceEEEEEccC---ceEeeccCCceEEEEeccCcc------------
Confidence 367899999999999888764 788899999876 678999999999999999887
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
+...+ .+|..+|.++..+ +.++++ +.|++|.+||+.++ ++++.+.+|... |.++.+
T Consensus 323 --~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~----------------~cl~sl~gH~~~--V~sl~~ 379 (537)
T KOG0274|consen 323 --CLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG----------------KCLKSLSGHTGR--VYSLIV 379 (537)
T ss_pred --eEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhhhc----------------eeeeeecCCcce--EEEEEe
Confidence 44444 6699999999988 556666 57999999999988 899999999977 999977
Q ss_pred ecCCCcEEEEeccCCeEEEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCC-Ccc
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD-NAE 236 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~ 236 (316)
.+. ..+++|+.|+.|++||+.+. +++..+.+|.+.+..+.+ .+++|++++.|++|++||...+. +..+.+ |..
T Consensus 380 -~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~ 455 (537)
T KOG0274|consen 380 -DSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVG 455 (537)
T ss_pred -cCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcc
Confidence 443 89999999999999999999 999999999998877665 57789999999999999999887 666666 445
Q ss_pred cceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160 237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~ 271 (316)
.+.... .. ...+++.+.++.+++||++.+...
T Consensus 456 ~v~~l~-~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 456 GVSALA-LG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cEEEee-cC--cceEEEEecCCeeEEEecccCchh
Confidence 554443 22 468899999999999999987543
No 73
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=175.45 Aligned_cols=248 Identities=10% Similarity=0.158 Sum_probs=199.3
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 110 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 110 (316)
.||..+|.+++=+|.....+++|+.||.|++||+.... |...+ ..|.+.|..+.+.. +.++.+|
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~--------------~~~~f-~AH~G~V~Gi~v~~-~~~~tvg 126 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE--------------CIRTF-KAHEGLVRGICVTQ-TSFFTVG 126 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhh--------------hhhee-ecccCceeeEEecc-cceEEec
Confidence 58999999999999877889999999999999999776 44444 88999999999987 5566668
Q ss_pred cCCcEEEEEcCCCC----------------------CCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC-CcEE
Q 021160 111 NDELVYLFEKNMGL----------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYV 167 (316)
Q Consensus 111 ~d~~i~iwd~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l 167 (316)
.|++|+.|.++... ...-..+.+|+.....+++.+.-..+. |.++.| +|. ...|
T Consensus 127 dDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dt--i~svkf-NpvETsIL 203 (433)
T KOG0268|consen 127 DDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADS--ISSVKF-NPVETSIL 203 (433)
T ss_pred CCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCc--eeEEec-CCCcchhe
Confidence 99999999865432 111122446667666777777765544 999999 554 5567
Q ss_pred EEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecC
Q 021160 168 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQG 245 (316)
Q Consensus 168 ~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~ 245 (316)
+++..|+.|.+||+++++++..+.. ...-+.++|+|..-.|++|++|..++.||.+... +....+|..+++... ++
T Consensus 204 as~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd-fs 281 (433)
T KOG0268|consen 204 ASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD-FS 281 (433)
T ss_pred eeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEec-cC
Confidence 7777999999999999998876643 3455789999976669999999999999998766 777889999999888 89
Q ss_pred CCCceeEEecCCCeEEEEEecccCcc----------eeE-EeecccccccccCCCCeEEEEeccC
Q 021160 246 REDHSRITLTPDVIMHVLRLQRRQTL----------AYR-ERRYNAADFESDEEEGETYLLGFSD 299 (316)
Q Consensus 246 ~~~~~~~s~~~d~~~~~w~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~v~~~~~~~ 299 (316)
+.|.-+++++.|.+|+++....++.. ++. .++.+..++.++++++-|-+|-..-
T Consensus 282 ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 282 PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 99999999999999999998765322 222 6888999999999999999886543
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=7.8e-26 Score=168.28 Aligned_cols=201 Identities=15% Similarity=0.218 Sum_probs=170.2
Q ss_pred CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ec
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN 111 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~ 111 (316)
|+.-|.+++|+.+. ++|++|+.+..+|+||++..+ .+..-..+|.+.|..+.|....+.+++ +.
T Consensus 99 hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~--------------App~E~~ghtg~Ir~v~wc~eD~~iLSSad 163 (334)
T KOG0278|consen 99 HKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPK--------------APPKEISGHTGGIRTVLWCHEDKCILSSAD 163 (334)
T ss_pred hhheeeeEEecccc-hhhhccchHHHhhhhhccCCC--------------CCchhhcCCCCcceeEEEeccCceEEeecc
Confidence 77789999999988 899999999999999999776 333334899999999999998876665 68
Q ss_pred CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160 112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 191 (316)
Q Consensus 112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~ 191 (316)
|++|++||.+++ ..++.+.-... |+++.. +++|.+|.++ ..+.|.+||..+..++..+.
T Consensus 164 d~tVRLWD~rTg----------------t~v~sL~~~s~---VtSlEv-s~dG~ilTia-~gssV~Fwdaksf~~lKs~k 222 (334)
T KOG0278|consen 164 DKTVRLWDHRTG----------------TEVQSLEFNSP---VTSLEV-SQDGRILTIA-YGSSVKFWDAKSFGLLKSYK 222 (334)
T ss_pred CCceEEEEeccC----------------cEEEEEecCCC---Ccceee-ccCCCEEEEe-cCceeEEeccccccceeecc
Confidence 999999999998 67777764332 899998 8999877654 56789999999988888776
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCC-CCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160 192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPL-PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 269 (316)
Q Consensus 192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~ 269 (316)
. ...|.+...+|+...++.|++|..++.||..++. +... .+|..++..+- ++|++...++++.||+|++|.+.-++
T Consensus 223 ~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVr-FSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 223 M-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVR-FSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred C-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEE-ECCCCceeeccCCCceEEEEEecCCC
Confidence 4 3578999999999999999999999999999987 4443 78888887666 99999999999999999999987765
Q ss_pred cc
Q 021160 270 TL 271 (316)
Q Consensus 270 ~~ 271 (316)
..
T Consensus 301 ~~ 302 (334)
T KOG0278|consen 301 TY 302 (334)
T ss_pred ch
Confidence 54
No 75
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=186.69 Aligned_cols=240 Identities=17% Similarity=0.210 Sum_probs=190.7
Q ss_pred ceeeEEEEeeCCCcceEEE-eccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 2 VLFNMLFDLRSDSATRLFY-CSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~-~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
+|.|++|+.......+... ....+ .|..-|+.++...++ +.|++++.|.+|++|+.....
T Consensus 46 Dg~i~~W~~~~d~~~~s~~~~asme------~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~------------ 106 (735)
T KOG0308|consen 46 DGIIRLWSVTQDSNEPSTPYIASME------HHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDN------------ 106 (735)
T ss_pred CceEEEeccccccCCcccchhhhhh------hhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCc------------
Confidence 6899999998665432221 22222 388999999999888 899999999999999998653
Q ss_pred ecccccccCCCcccEEEEEE-ccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceee-CCcCCceeeeE
Q 021160 81 TFCPRHLIGKNNIHITGLAY-SNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGV 157 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~-~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~ 157 (316)
.+|..++ ..|.+.|.|+++ .++..++|++ -|+.|.+||++.+......++ .. .....+. ++... |+++
T Consensus 107 ~~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~--n~----~t~~sl~sG~k~s--iYSL 177 (735)
T KOG0308|consen 107 TFCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASF--NN----VTVNSLGSGPKDS--IYSL 177 (735)
T ss_pred chhHhhh-hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhc--cc----cccccCCCCCccc--eeee
Confidence 2366666 889999999999 6666788885 699999999997732100000 00 1112222 66655 9999
Q ss_pred EEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcc
Q 021160 158 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAE 236 (316)
Q Consensus 158 ~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~ 236 (316)
+. .+.|..|++|+..+.+++||.++++.+..+.+|+..|..+..+++|..++++|.||+|++||+..++ +.++..|.+
T Consensus 178 A~-N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e 256 (735)
T KOG0308|consen 178 AM-NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE 256 (735)
T ss_pred ec-CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence 98 8999999999999999999999999999999999999999999999999999999999999999877 778888888
Q ss_pred cceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160 237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~ 271 (316)
.+.... .+++-..+.+|+.|+.|..-++.+....
T Consensus 257 ~VWaL~-~~~sf~~vYsG~rd~~i~~Tdl~n~~~~ 290 (735)
T KOG0308|consen 257 GVWALQ-SSPSFTHVYSGGRDGNIYRTDLRNPAKS 290 (735)
T ss_pred ceEEEe-eCCCcceEEecCCCCcEEecccCCchhh
Confidence 876665 4566778999999999999999885333
No 76
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=6.4e-24 Score=159.01 Aligned_cols=224 Identities=13% Similarity=0.164 Sum_probs=174.5
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+++|.||++...+..+.. ...||.+.|-.++|+|..+.+|++++.|.+|++||++.+++
T Consensus 41 dktv~v~n~e~~r~~~~~---------~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~------------ 99 (313)
T KOG1407|consen 41 DKTVSVWNLERDRFRKEL---------VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKC------------ 99 (313)
T ss_pred CCceEEEEecchhhhhhh---------cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcE------------
Confidence 578889988765322111 22479999999999999989999999999999999999883
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
...+ .. ...-.-+.|+|+|++++.+ .|..|...|.++. +...... .. ..+..++|
T Consensus 100 --~~~i-~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~----------------~~~~~~~-~~--~e~ne~~w- 155 (313)
T KOG1407|consen 100 --TARI-ET-KGENINITWSPDGEYIAVGNKDDRITFIDARTY----------------KIVNEEQ-FK--FEVNEISW- 155 (313)
T ss_pred --EEEe-ec-cCcceEEEEcCCCCEEEEecCcccEEEEEeccc----------------ceeehhc-cc--ceeeeeee-
Confidence 2222 11 2233457899999977775 7999999999876 3333322 12 23778888
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM 239 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~ 239 (316)
+.++.+++..+..|.|.|.....-+++..+++|.....++.|+|+|++||+|+.|..+.+||+...- .+.+..+.-++.
T Consensus 156 ~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVR 235 (313)
T KOG1407|consen 156 NNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVR 235 (313)
T ss_pred cCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceE
Confidence 5667777776778999999999999999999999999999999999999999999999999998765 555555555554
Q ss_pred eeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160 240 KANKQGREDHSRITLTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~ 271 (316)
.+. ++-+++++++++.|--|-+-+++++.+.
T Consensus 236 TlS-FS~dg~~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 236 TLS-FSHDGRMLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred EEE-eccCcceeeccCccceEEeEecccCCeE
Confidence 444 8899999999999999888888887554
No 77
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-23 Score=161.02 Aligned_cols=232 Identities=14% Similarity=0.179 Sum_probs=186.0
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEec-
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN- 111 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~- 111 (316)
.+.|+++.|+++| .++++++.|..++|||..+++ +.+.+ ..+...+..+.|..... .+.++.
T Consensus 14 ~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~--------------~~~ti-~skkyG~~~~~Fth~~~~~i~sStk 77 (311)
T KOG1446|consen 14 NGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGK--------------QVKTI-NSKKYGVDLACFTHHSNTVIHSSTK 77 (311)
T ss_pred CCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCc--------------eeeEe-ecccccccEEEEecCCceEEEccCC
Confidence 5689999999999 899999999999999999887 44444 44556678888876665 555543
Q ss_pred -CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160 112 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 190 (316)
Q Consensus 112 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~ 190 (316)
|.+|+..++.+. +.++.|.||... |.+++. +|.+..+++++.|++|++||++..++...+
T Consensus 78 ~d~tIryLsl~dN----------------kylRYF~GH~~~--V~sL~~-sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 78 EDDTIRYLSLHDN----------------KYLRYFPGHKKR--VNSLSV-SPKDDTFLSSSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred CCCceEEEEeecC----------------ceEEEcCCCCce--EEEEEe-cCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence 999999999988 789999999976 999998 899999999999999999999988887777
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC---CCC--CCCCcccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160 191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPP--LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 265 (316)
Q Consensus 191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~ 265 (316)
..... ..++|.|+|-++|++.....|++||++.-. ..+ +......-+....++++|..++-.+..+.+.+.|.
T Consensus 139 ~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA 216 (311)
T KOG1446|consen 139 NLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA 216 (311)
T ss_pred ecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc
Confidence 54333 347899999999999888899999998653 222 22222333455668999999999999998888886
Q ss_pred cccC-------------cceeEEeecccccccccCCCCeEEEEeccCCCC
Q 021160 266 QRRQ-------------TLAYRERRYNAADFESDEEEGETYLLGFSDSDA 302 (316)
Q Consensus 266 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 302 (316)
-++. .+.-..+.|++..+.+++++|++++|+...+..
T Consensus 217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence 5542 222336889999999999999999999988765
No 78
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.3e-24 Score=159.95 Aligned_cols=226 Identities=15% Similarity=0.199 Sum_probs=173.5
Q ss_pred CceeeEEEEeeCCCc-ceEEEeccccccccCCCCccceEEEEEC-C-CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCC
Q 021160 1 MVLFNMLFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVID-P-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT 77 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~-~~~~~~~~~~~~~~~~gh~~~v~~~~~~-~-~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~ 77 (316)
.++.|+|+..+.+.. ..+..+ .||+++|..++|. | .| .+||+++.||+|.||.-..++.
T Consensus 31 SD~tVkIf~v~~n~~s~ll~~L---------~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~~g~w-------- 92 (299)
T KOG1332|consen 31 SDGTVKIFEVRNNGQSKLLAEL---------TGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEENGRW-------- 92 (299)
T ss_pred CCccEEEEEEcCCCCceeeeEe---------cCCCCCeeEEeecccccC-cEeeEeecCceEEEEecCCCch--------
Confidence 378999999998765 333322 3799999999995 4 45 8999999999999999988764
Q ss_pred CceecccccccCCCcccEEEEEEccCCC--eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCcee
Q 021160 78 PVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTV 154 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 154 (316)
........|...|++++|.|.+- .|++ ++||.|.+++.+.... ....+....|... +
T Consensus 93 -----~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~-------------w~t~ki~~aH~~G--v 152 (299)
T KOG1332|consen 93 -----TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG-------------WTTSKIVFAHEIG--V 152 (299)
T ss_pred -----hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC-------------ccchhhhhccccc--c
Confidence 23334478999999999999764 6666 5899999999875410 0233455678866 9
Q ss_pred eeEEEecCC---C-----------cEEEEeccCCeEEEEeccCCe--eEEEeecCccceEEEEEcCCC----CeEEEEeC
Q 021160 155 KGVNFFGPN---D-----------EYVMSGSDCGHLFIWKKKGGK--LVRLMVGDRHVVNQLEPHPHI----PMFATCGI 214 (316)
Q Consensus 155 ~~~~~~~~~---~-----------~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~~p~~----~~l~s~~~ 214 (316)
++++| .|. | +.|++|+.|..|++|+...++ ...+|.+|.+.|..++|.|.. .+||+++.
T Consensus 153 nsVsw-apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 153 NSVSW-APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred ceeee-cCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 99998 665 3 569999999999999998763 345688999999999999965 35999999
Q ss_pred CCcEEEecCCCCC----CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160 215 EKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 266 (316)
Q Consensus 215 d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~ 266 (316)
||++.||...... ...+......++... |+..++.|+....|+.+.+|.-.
T Consensus 232 Dg~viIwt~~~e~e~wk~tll~~f~~~~w~vS-WS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 232 DGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVS-WSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CCcEEEEEecCccCcccccccccCCcceEEEE-EeccccEEEEecCCcEEEEEEeC
Confidence 9999999876331 223334455555555 88889999999999999999643
No 79
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.8e-24 Score=176.01 Aligned_cols=268 Identities=11% Similarity=0.095 Sum_probs=184.7
Q ss_pred CceeeEEEEeeCCCc-ceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160 1 MVLFNMLFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV 79 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~-~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~ 79 (316)
++-+|+.||+..... .+.|+..... -...|+++.|++.+ ..|++.+...+.+|+|....++...++...-|
T Consensus 187 ~Dy~v~~wDf~gMdas~~~fr~l~P~-------E~h~i~sl~ys~Tg-~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI 258 (641)
T KOG0772|consen 187 LDYTVKFWDFQGMDASMRSFRQLQPC-------ETHQINSLQYSVTG-DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI 258 (641)
T ss_pred ccceEEEEecccccccchhhhccCcc-------cccccceeeecCCC-CeEEEEecCcceeEEccCCceeeeeeccchhh
Confidence 356899999976542 2333322222 24479999999999 67777777789999998766544333333323
Q ss_pred eecccccccCCCcccEEEEEEccCCC--eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc---CCcee
Q 021160 80 DTFCPRHLIGKNNIHITGLAYSNTSE--LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR---NSQTV 154 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i 154 (316)
..+ ....+|...++|.+|+|..+ +|.++.|++++|||++... +..+.+.... ....+
T Consensus 259 ~Dm---~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k---------------~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 259 RDM---YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK---------------SQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred hhh---hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch---------------hheeEEeeccCCCcccCc
Confidence 221 22378999999999999875 6666789999999998763 2334443222 11237
Q ss_pred eeEEEecCCCcEEEEeccCCeEEEEeccCCee---EEEeecCcc--ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--
Q 021160 155 KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL---VRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-- 227 (316)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~---~~~~~~~~~--~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-- 227 (316)
+.++| ++++.+||+|+.||.|.+|+...... ...-.+|.. .|+++.||++|++|++-+.|+++++||++..+
T Consensus 321 tsC~~-nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 321 TSCAW-NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred eeeec-CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 88998 99999999999999999999753221 233346776 89999999999999999999999999998765
Q ss_pred CCCCCCCccc-ceeeeecCCCCceeEEecCC------CeEEEEEecccCcc----------eeEEeecccccccccCCCC
Q 021160 228 FPPLPDNAEK-IMKANKQGREDHSRITLTPD------VIMHVLRLQRRQTL----------AYRERRYNAADFESDEEEG 290 (316)
Q Consensus 228 ~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~d------~~~~~w~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 290 (316)
+....+-... ...-+.++++..++++|++- +.+.+++..+-+.. +...+-|....+..+..+|
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG 479 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDG 479 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCC
Confidence 3333332221 23344589999999998753 77888876543211 1124556666666666667
Q ss_pred eEEEE
Q 021160 291 ETYLL 295 (316)
Q Consensus 291 ~v~~~ 295 (316)
.++++
T Consensus 480 ~~~vy 484 (641)
T KOG0772|consen 480 TAHVY 484 (641)
T ss_pred ceEEE
Confidence 77766
No 80
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=3.2e-25 Score=165.06 Aligned_cols=178 Identities=17% Similarity=0.233 Sum_probs=149.5
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF 82 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~ 82 (316)
..|||||++..++.+.-. .||++.|..+-|.... +.|++.+.|++||+||.+++...+.
T Consensus 122 kllrvfdln~p~App~E~----------~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~s---------- 180 (334)
T KOG0278|consen 122 KLLRVFDLNRPKAPPKEI----------SGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQS---------- 180 (334)
T ss_pred HHhhhhhccCCCCCchhh----------cCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEEE----------
Confidence 457888887766544322 2589999999999988 8899999999999999999973321
Q ss_pred ccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC
Q 021160 83 CPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 162 (316)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 162 (316)
+ ....+|+++.++++|++|..+..+.|..||..+. .+++.+.-..+ |.+.+. +|
T Consensus 181 ----L--~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf----------------~~lKs~k~P~n---V~SASL-~P 234 (334)
T KOG0278|consen 181 ----L--EFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF----------------GLLKSYKMPCN---VESASL-HP 234 (334)
T ss_pred ----E--ecCCCCcceeeccCCCEEEEecCceeEEeccccc----------------cceeeccCccc---cccccc-cC
Confidence 1 1256789999999999999998999999999876 56666554333 888888 89
Q ss_pred CCcEEEEeccCCeEEEEeccCCeeEEEe-ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 163 NDEYVMSGSDCGHLFIWKKKGGKLVRLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 163 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
+..++++|++|..++.||..+++.+..+ ++|.++|.++.|+|+|...++||+||+|++|....++
T Consensus 235 ~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 9999999999999999999999998886 8999999999999999999999999999999987665
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=1.6e-24 Score=190.51 Aligned_cols=216 Identities=17% Similarity=0.300 Sum_probs=172.6
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCC---CCCCCceecccccccCCCcccEEEEEEccCCCeEE
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI---SSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI 108 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 108 (316)
.|.+.|+|+.|+|+| .+||+|+.|+.|.+|........... .....++.+.......+|...|..++|+|++.+|+
T Consensus 67 ~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv 145 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV 145 (942)
T ss_pred cccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEE
Confidence 489999999999999 99999999999999998841110111 11223444444455588999999999999999999
Q ss_pred Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE
Q 021160 109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 187 (316)
Q Consensus 109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~ 187 (316)
++ .|++|.+||..+. +.+..+.+|... |..+.| .|-|+||++-++|++|++|...+....
T Consensus 146 S~s~DnsViiwn~~tF----------------~~~~vl~~H~s~--VKGvs~-DP~Gky~ASqsdDrtikvwrt~dw~i~ 206 (942)
T KOG0973|consen 146 SVSLDNSVIIWNAKTF----------------ELLKVLRGHQSL--VKGVSW-DPIGKYFASQSDDRTLKVWRTSDWGIE 206 (942)
T ss_pred EecccceEEEEccccc----------------eeeeeeeccccc--ccceEE-CCccCeeeeecCCceEEEEEcccceee
Confidence 95 6999999999988 789999999977 999999 999999999999999999995532111
Q ss_pred E----------------------------------------------------EeecCccceEEEEEcCC-----CC---
Q 021160 188 R----------------------------------------------------LMVGDRHVVNQLEPHPH-----IP--- 207 (316)
Q Consensus 188 ~----------------------------------------------------~~~~~~~~v~~~~~~p~-----~~--- 207 (316)
+ .|-+|..++.++.|+|. .+
T Consensus 207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~ 286 (942)
T KOG0973|consen 207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGT 286 (942)
T ss_pred EeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCC
Confidence 1 45688999999999982 12
Q ss_pred ---------eEEEEeCCCcEEEecCCCCC-CCCCCC-CcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 208 ---------MFATCGIEKTVKLWAPMPTD-FPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 208 ---------~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
.+|+||.|++|-||.....+ +..... ....++.+. |+++|..|+.+|.||+|.++.+++.
T Consensus 287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~Dms-WspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 287 STQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMS-WSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred ccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeee-EcCCCCeEEEEecCCeEEEEEcchH
Confidence 58899999999999986665 222222 345565665 9999999999999999999999875
No 82
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=6.8e-25 Score=171.26 Aligned_cols=230 Identities=10% Similarity=0.151 Sum_probs=173.1
Q ss_pred CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCC------
Q 021160 1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS------ 74 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~------ 74 (316)
.+|.|++||+.+..+...+.+ |.+.|..++++. ..+++++.|.+|+.|-++.. ...++.
T Consensus 87 ~DG~VkiWnlsqR~~~~~f~A-----------H~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~-p~~tilg~s~~~ 151 (433)
T KOG0268|consen 87 CDGEVKIWNLSQRECIRTFKA-----------HEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGP-PLHTILGKSVYL 151 (433)
T ss_pred cCceEEEEehhhhhhhheeec-----------ccCceeeEEecc---cceEEecCCcceeeeeccCC-cceeeecccccc
Confidence 489999999999888777776 688999999987 46889999999999986532 111110
Q ss_pred -------------CCCCceec------ccccccCCCcccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCc
Q 021160 75 -------------SDTPVDTF------CPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSP 133 (316)
Q Consensus 75 -------------~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 133 (316)
..+.+.-+ ....+ .--.+.|.++.|+|-.. +|+++ +|+.|.+||+++.
T Consensus 152 gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~sm-swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~---------- 220 (433)
T KOG0268|consen 152 GIDHHRKNSVFATCGEQIDIWDEQRDNPVSSM-SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA---------- 220 (433)
T ss_pred ccccccccccccccCceeeecccccCCcccee-ecCCCceeEEecCCCcchheeeeccCCceEEEecccC----------
Confidence 00001100 00111 22345788999999876 67775 8999999999988
Q ss_pred cccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC-CeeEEEeecCccceEEEEEcCCCCeEEEE
Q 021160 134 EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATC 212 (316)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~s~ 212 (316)
.+++.+.-..- .+.++| +|.+-.+++|++|..++.||++. ..++....+|.+.|.++.|+|.|+-|++|
T Consensus 221 ------~Pl~KVi~~mR---TN~Isw-nPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 221 ------SPLKKVILTMR---TNTICW-NPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG 290 (433)
T ss_pred ------Cccceeeeecc---ccceec-CccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence 55555442221 567888 88888899999999999999886 35677788999999999999999999999
Q ss_pred eCCCcEEEecCCCCCCCCCCCCc---ccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 213 GIEKTVKLWAPMPTDFPPLPDNA---EKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 213 ~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
|.|.+|+||..+.+....+. |. ..++... |+.|..++++||.|+.|++|.-.-.
T Consensus 291 syDksIRIf~~~~~~SRdiY-htkRMq~V~~Vk-~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDIY-HTKRMQHVFCVK-YSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred cccceEEEeecCCCcchhhh-hHhhhheeeEEE-EeccccEEEecCCCcceeeeecchh
Confidence 99999999999887644333 32 3344444 8899999999999999999986543
No 83
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4e-23 Score=151.92 Aligned_cols=205 Identities=16% Similarity=0.186 Sum_probs=168.2
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC----CCe
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SEL 106 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~ 106 (316)
+.|++.|.|.+|+|.| .++++|+.|.+|++.-++...+... -..-...-|.+.|..++|..+ +.+
T Consensus 86 khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~----------g~dle~nmhdgtirdl~fld~~~s~~~i 154 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNAT----------GHDLEFNMHDGTIRDLAFLDDPESGGAI 154 (350)
T ss_pred cccCccEEEEEecCcc-CeEEecCCCceEEEEeccccccccc----------CcceeeeecCCceeeeEEecCCCcCceE
Confidence 4699999999999999 8999999999999987764432110 011112568899999999754 347
Q ss_pred EEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC
Q 021160 107 LISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 184 (316)
Q Consensus 107 l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~ 184 (316)
|+++ .|..|++-|...+ ...+.+.+|+.- |.++- +-++-.+++|+.|.+|++||++-.
T Consensus 155 l~s~gagdc~iy~tdc~~g----------------~~~~a~sghtgh--ilaly--swn~~m~~sgsqdktirfwdlrv~ 214 (350)
T KOG0641|consen 155 LASAGAGDCKIYITDCGRG----------------QGFHALSGHTGH--ILALY--SWNGAMFASGSQDKTIRFWDLRVN 214 (350)
T ss_pred EEecCCCcceEEEeecCCC----------------CcceeecCCccc--EEEEE--EecCcEEEccCCCceEEEEeeecc
Confidence 7874 5888888888888 688999999966 77763 557899999999999999999988
Q ss_pred eeEEEeec--C-----ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecC
Q 021160 185 KLVRLMVG--D-----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTP 256 (316)
Q Consensus 185 ~~~~~~~~--~-----~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 256 (316)
.++..+.. | .+.|.+++..|.|++|++|-.|....+||++.+. ++.+..|...+... .+++.-.++++++.
T Consensus 215 ~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~v-rfsp~a~yllt~sy 293 (350)
T KOG0641|consen 215 SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCV-RFSPGAHYLLTCSY 293 (350)
T ss_pred ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEE-EeCCCceEEEEecc
Confidence 88877642 2 2579999999999999999999999999999998 88888888887544 48998999999999
Q ss_pred CCeEEEEEecc
Q 021160 257 DVIMHVLRLQR 267 (316)
Q Consensus 257 d~~~~~w~~~~ 267 (316)
|..|++-|++.
T Consensus 294 d~~ikltdlqg 304 (350)
T KOG0641|consen 294 DMKIKLTDLQG 304 (350)
T ss_pred cceEEEeeccc
Confidence 99999999875
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.5e-24 Score=175.20 Aligned_cols=222 Identities=13% Similarity=0.212 Sum_probs=176.5
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.|.|+|||+.+......+.. |..+|....|+|++...+++|+.|+.+++||+.+..
T Consensus 89 sG~V~vfD~k~r~iLR~~~a-----------h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~------------- 144 (487)
T KOG0310|consen 89 SGHVKVFDMKSRVILRQLYA-----------HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY------------- 144 (487)
T ss_pred cCcEEEeccccHHHHHHHhh-----------ccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-------------
Confidence 58999999665444444443 788999999999987889999999999999999775
Q ss_pred cccccccCCCcccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
. ...+.+|++.|.|.+|+|... ++++| .||+|++||++... ..+..+ .|..+ |.++.+
T Consensus 145 -v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~---------------~~v~el-nhg~p--Ve~vl~ 204 (487)
T KOG0310|consen 145 -V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT---------------SRVVEL-NHGCP--VESVLA 204 (487)
T ss_pred -E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC---------------ceeEEe-cCCCc--eeeEEE
Confidence 2 222389999999999999765 77775 69999999998761 122333 45655 999998
Q ss_pred ecCCCcEEEEeccCCeEEEEeccC-CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCccc
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEK 237 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~ 237 (316)
-|.|..|++++ ...|++||+-+ ++.+..+..|...|+|+++..++..|++++-|+.|++||+..-+ +..+ ....+
T Consensus 205 -lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-~~~~p 281 (487)
T KOG0310|consen 205 -LPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW-KYPGP 281 (487)
T ss_pred -cCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee-ecccc
Confidence 78889999887 46799999985 45555666699999999999999999999999999999977776 4444 37788
Q ss_pred ceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160 238 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~ 271 (316)
+++++ .++++..++.|-.+|.+.+-+...++++
T Consensus 282 vLsia-vs~dd~t~viGmsnGlv~~rr~~~k~k~ 314 (487)
T KOG0310|consen 282 VLSIA-VSPDDQTVVIGMSNGLVSIRRREVKKKP 314 (487)
T ss_pred eeeEE-ecCCCceEEEecccceeeeehhhcccCC
Confidence 88888 7888999999999999888765544333
No 85
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=3.1e-24 Score=163.43 Aligned_cols=215 Identities=16% Similarity=0.217 Sum_probs=163.4
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc--cccccCCCcccEEEEEEccCCC-eEE
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC--PRHLIGKNNIHITGLAYSNTSE-LLI 108 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l~ 108 (316)
.|.+.|+++.+.+...+++++|+.||.|.+||++...-.. ...--.+..| .+.-..+|.-.|..+.|-|-.. ++.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e--~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYE--ASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchh--hccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 5899999999999887999999999999999997543000 0000111122 2233367899999999999665 666
Q ss_pred Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC---CcEEEEeccCCeEEEEeccCC
Q 021160 109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---DEYVMSGSDCGHLFIWKKKGG 184 (316)
Q Consensus 109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~v~~wd~~~~ 184 (316)
++ -|.++++||..+. +....|+ .. ..|.+-++ +|- .-++++|..+-.|++.|+.+|
T Consensus 119 ssSFDhtlKVWDtnTl----------------Q~a~~F~-me--~~VYsham-Sp~a~sHcLiA~gtr~~~VrLCDi~SG 178 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTL----------------QEAVDFK-ME--GKVYSHAM-SPMAMSHCLIAAGTRDVQVRLCDIASG 178 (397)
T ss_pred cccccceEEEeecccc----------------eeeEEee-cC--ceeehhhc-ChhhhcceEEEEecCCCcEEEEeccCC
Confidence 65 5999999999876 3333333 12 23666666 553 458899999999999999999
Q ss_pred eeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCC--CCCC--------------CCCCcccceeeeecCCC
Q 021160 185 KLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT--DFPP--------------LPDNAEKIMKANKQGRE 247 (316)
Q Consensus 185 ~~~~~~~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~--~~~~--------------~~~~~~~~~~~~~~~~~ 247 (316)
..-+.+.+|.+.|.++.|+|...+ |++|+.||.|++||++.. +... -..|...+..++ |..+
T Consensus 179 s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla-~tSd 257 (397)
T KOG4283|consen 179 SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA-WTSD 257 (397)
T ss_pred cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee-eccc
Confidence 999999999999999999999888 899999999999998743 1221 223455555555 7788
Q ss_pred CceeEEecCCCeEEEEEecccC
Q 021160 248 DHSRITLTPDVIMHVLRLQRRQ 269 (316)
Q Consensus 248 ~~~~~s~~~d~~~~~w~~~~~~ 269 (316)
+.++++.+.|..+++|+...+.
T Consensus 258 ~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 258 ARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred chhhhhccCccceEEeecccCc
Confidence 9999999999999999988763
No 86
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.7e-25 Score=185.95 Aligned_cols=206 Identities=19% Similarity=0.211 Sum_probs=161.0
Q ss_pred ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEEEe-cCC
Q 021160 36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-NDE 113 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~-~d~ 113 (316)
.+..+.|+....++||+++..|.|.+||+..... . .....+..|...++++.|++.. .+|++| .||
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-------n-----k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg 156 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR-------N-----KLLTVFNEHERSANKLDFHSTEPNILISGSQDG 156 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCcccc-------c-----hhhhHhhhhccceeeeeeccCCccEEEecCCCc
Confidence 4567888876668999999999999999986210 0 2223447899999999999976 477775 699
Q ss_pred cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC-eeEEEeec
Q 021160 114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVG 192 (316)
Q Consensus 114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~-~~~~~~~~ 192 (316)
+|++||++.. +...++.+.... |.+|.|.+..+.+++++.+.|.+.+||++.. ++...+.+
T Consensus 157 ~vK~~DlR~~----------------~S~~t~~~nSES--iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A 218 (839)
T KOG0269|consen 157 TVKCWDLRSK----------------KSKSTFRSNSES--IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA 218 (839)
T ss_pred eEEEEeeecc----------------cccccccccchh--hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc
Confidence 9999999987 677778876644 9999995556889999999999999999864 45667889
Q ss_pred CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC-CCCCcccceeeeecCCCC-ceeEEec--CCCeEEEEEeccc
Q 021160 193 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-LPDNAEKIMKANKQGRED-HSRITLT--PDVIMHVLRLQRR 268 (316)
Q Consensus 193 ~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~s~~--~d~~~~~w~~~~~ 268 (316)
|.++|.++.|||++.+|||||.|++|+|||..+.+... ..-+.-..+....|.|+. ..|++++ .|..|+|||+++.
T Consensus 219 H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 219 HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 99999999999999999999999999999998765222 222333344555566654 4455443 5899999999998
Q ss_pred Ccc
Q 021160 269 QTL 271 (316)
Q Consensus 269 ~~~ 271 (316)
-.+
T Consensus 299 YIP 301 (839)
T KOG0269|consen 299 YIP 301 (839)
T ss_pred ccc
Confidence 665
No 87
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.1e-24 Score=160.12 Aligned_cols=235 Identities=13% Similarity=0.158 Sum_probs=182.9
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc--CCCeEEE
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLIS 109 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s 109 (316)
.|+..|..+..+--| ..||++++|++|+|+.++...- ...+.++ .+|.++|..++|.. .|.+|++
T Consensus 9 ~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~-----------s~ll~~L-~Gh~GPVwqv~wahPk~G~iLAS 75 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQ-----------SKLLAEL-TGHSGPVWKVAWAHPKFGTILAS 75 (299)
T ss_pred hhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCC-----------ceeeeEe-cCCCCCeeEEeecccccCcEeeE
Confidence 488899988888888 8999999999999999986541 0122233 89999999999976 6889999
Q ss_pred e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC--CcEEEEeccCCeEEEEeccCC-e
Q 021160 110 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGG-K 185 (316)
Q Consensus 110 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~~wd~~~~-~ 185 (316)
+ .||+|.||.-+++. ......+..|... +++++| .|. |-.|++++.||.|.+.+.+.. .
T Consensus 76 csYDgkVIiWke~~g~--------------w~k~~e~~~h~~S--VNsV~w-apheygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 76 CSYDGKVIIWKEENGR--------------WTKAYEHAAHSAS--VNSVAW-APHEYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred eecCceEEEEecCCCc--------------hhhhhhhhhhccc--ceeecc-cccccceEEEEeeCCCcEEEEEEcCCCC
Confidence 6 69999999988771 1334556677765 999999 665 567899999999999998754 1
Q ss_pred --eEEEeecCccceEEEEEcCC---C-----------CeEEEEeCCCcEEEecCCCCC---CCCCCCCcccceeeeecCC
Q 021160 186 --LVRLMVGDRHVVNQLEPHPH---I-----------PMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGR 246 (316)
Q Consensus 186 --~~~~~~~~~~~v~~~~~~p~---~-----------~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~ 246 (316)
.......|.-.|++++|.|- | +.|++|+.|..|+||+..... ..+|.+|.+.+...+|.+.
T Consensus 139 w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~ 218 (299)
T KOG1332|consen 139 WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS 218 (299)
T ss_pred ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc
Confidence 22345679999999999996 4 459999999999999998865 4568899999988885443
Q ss_pred ---CCceeEEecCCCeEEEEEecccC------------cceeE-EeecccccccccCCCCeEEEEe
Q 021160 247 ---EDHSRITLTPDVIMHVLRLQRRQ------------TLAYR-ERRYNAADFESDEEEGETYLLG 296 (316)
Q Consensus 247 ---~~~~~~s~~~d~~~~~w~~~~~~------------~~~~~-~~~~~~~~~~~~~~~~~v~~~~ 296 (316)
....+++++.|+.+.+|...... -.+|. .++..+..++....+..|.+|-
T Consensus 219 ~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 219 VGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred cCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 24578999999999999876321 11233 5777788888777777788774
No 88
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=1.9e-23 Score=166.70 Aligned_cols=226 Identities=16% Similarity=0.253 Sum_probs=188.3
Q ss_pred cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCC
Q 021160 35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDE 113 (316)
Q Consensus 35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~ 113 (316)
..+.++...|.. ..+++|+.|..+.++|..+.+. . .++.+|...|+.+.++|+...+++ +.|.
T Consensus 220 pgi~ald~~~s~-~~ilTGG~d~~av~~d~~s~q~--------------l-~~~~Gh~kki~~v~~~~~~~~v~~aSad~ 283 (506)
T KOG0289|consen 220 PGITALDIIPSS-SKILTGGEDKTAVLFDKPSNQI--------------L-ATLKGHTKKITSVKFHKDLDTVITASADE 283 (506)
T ss_pred CCeeEEeecCCC-CcceecCCCCceEEEecchhhh--------------h-hhccCcceEEEEEEeccchhheeecCCcc
Confidence 468899999874 7999999999999999998862 2 233899999999999999876666 5799
Q ss_pred cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec-
Q 021160 114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG- 192 (316)
Q Consensus 114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~- 192 (316)
.|++|..... ........|..+ |+.+.. +|.|.||+++++|++..+.|++++.++.....
T Consensus 284 ~i~vws~~~~----------------s~~~~~~~h~~~--V~~ls~-h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~ 344 (506)
T KOG0289|consen 284 IIRVWSVPLS----------------SEPTSSRPHEEP--VTGLSL-HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE 344 (506)
T ss_pred eEEeeccccc----------------cCcccccccccc--ceeeee-ccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence 9999998776 455667778866 999998 89999999999999999999999998776653
Q ss_pred -CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160 193 -DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 270 (316)
Q Consensus 193 -~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~ 270 (316)
..-.+++++|||||.+|.+|..|+.|+|||+..+. ...+++|..++..+. ++.+|-++++.+.|+.|++||++....
T Consensus 345 ~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~-FsENGY~Lat~add~~V~lwDLRKl~n 423 (506)
T KOG0289|consen 345 TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAIS-FSENGYWLATAADDGSVKLWDLRKLKN 423 (506)
T ss_pred cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEE-eccCceEEEEEecCCeEEEEEehhhcc
Confidence 22468999999999999999999999999999887 888999999986666 888999999999999999999986432
Q ss_pred ce-----------eEEeecccccccccCCCCeEEEEe
Q 021160 271 LA-----------YRERRYNAADFESDEEEGETYLLG 296 (316)
Q Consensus 271 ~~-----------~~~~~~~~~~~~~~~~~~~v~~~~ 296 (316)
.. -..+...+.++...+.+=+||.+.
T Consensus 424 ~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 424 FKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred cceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 21 125666777887777775555555
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=1.6e-23 Score=167.16 Aligned_cols=203 Identities=17% Similarity=0.193 Sum_probs=166.1
Q ss_pred cCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE
Q 021160 29 KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI 108 (316)
Q Consensus 29 ~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 108 (316)
.++||...|+.+.|+|+. ..+++++.|..|++|...... + ......|..+|+.+..+|.|.+|+
T Consensus 256 ~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s--------------~-~~~~~~h~~~V~~ls~h~tgeYll 319 (506)
T KOG0289|consen 256 TLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSS--------------E-PTSSRPHEEPVTGLSLHPTGEYLL 319 (506)
T ss_pred hccCcceEEEEEEeccch-hheeecCCcceEEeecccccc--------------C-ccccccccccceeeeeccCCcEEE
Confidence 346899999999999998 899999999999999988664 2 233378999999999999999888
Q ss_pred Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE
Q 021160 109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 187 (316)
Q Consensus 109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~ 187 (316)
++ +|++..+.|++++ ..+.......+...+++.+| +|||-++.+|+.|+.+++||+.++..+
T Consensus 320 sAs~d~~w~Fsd~~~g----------------~~lt~vs~~~s~v~~ts~~f-HpDgLifgtgt~d~~vkiwdlks~~~~ 382 (506)
T KOG0289|consen 320 SASNDGTWAFSDISSG----------------SQLTVVSDETSDVEYTSAAF-HPDGLIFGTGTPDGVVKIWDLKSQTNV 382 (506)
T ss_pred EecCCceEEEEEccCC----------------cEEEEEeeccccceeEEeeE-cCCceEEeccCCCceEEEEEcCCcccc
Confidence 84 7999999999988 44444443233344899999 999999999999999999999999999
Q ss_pred EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160 188 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 264 (316)
Q Consensus 188 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~ 264 (316)
..|++|+++|..++|+.+|-+||+++.|+.|++||++..+ ..++.-....-.....+...+.+++.++.+-.|.+..
T Consensus 383 a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 383 AKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred ccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 9999999999999999999999999999999999999876 4444432222223333677788999987777666665
No 90
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=2.5e-24 Score=168.91 Aligned_cols=195 Identities=16% Similarity=0.229 Sum_probs=152.3
Q ss_pred ceeeEEEEeeCCC-----cceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCC
Q 021160 2 VLFNMLFDLRSDS-----ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSD 76 (316)
Q Consensus 2 ~g~v~vwd~~~~~-----~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~ 76 (316)
.|.|+|||+...- +.........++...+.+|.+.=++++|+|.....+++|..-+.|++|...++.+..
T Consensus 174 ~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v----- 248 (440)
T KOG0302|consen 174 NGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV----- 248 (440)
T ss_pred cCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceee-----
Confidence 4899999996421 111222244445556678999999999999664579999888999999999887531
Q ss_pred CCceecccccccCCCcccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCcee
Q 021160 77 TPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTV 154 (316)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 154 (316)
-...+ .+|+..|..+.|+|..+ +|+++ .|++|+|||++.+.. +.....+.|... |
T Consensus 249 ------d~~Pf-~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~--------------~~~~~~kAh~sD--V 305 (440)
T KOG0302|consen 249 ------DQRPF-TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK--------------KAAVSTKAHNSD--V 305 (440)
T ss_pred ------cCccc-cccccchhhhccCCccCceEEeeecCceEEEEEecCCCc--------------cceeEeeccCCc--e
Confidence 12222 56999999999999875 78885 699999999998721 223334667755 9
Q ss_pred eeEEEecCCCcEEEEeccCCeEEEEeccC---CeeEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEecCCC
Q 021160 155 KGVNFFGPNDEYVMSGSDCGHLFIWKKKG---GKLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMP 225 (316)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~dg~v~~wd~~~---~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~ 225 (316)
+-+.| +..-.+|++|++||+++|||++. ++++..++-|..+|+++.|+|... .|++++.|..|.+||+..
T Consensus 306 NVISW-nr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 306 NVISW-NRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeEEc-cCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999 77777999999999999999874 678889999999999999999764 488888999999999864
No 91
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4e-24 Score=164.54 Aligned_cols=253 Identities=13% Similarity=0.225 Sum_probs=194.9
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 110 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 110 (316)
.||+..|..++-.... ..+.+++.|.+.+||.++++. |+... .+|.+.|++++|++.+.+++++
T Consensus 145 ~GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Esg~--------------CL~~Y-~GH~GSVNsikfh~s~~L~lTa 208 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQ-PICGTASADHTARIWSLESGA--------------CLATY-TGHTGSVNSIKFHNSGLLLLTA 208 (481)
T ss_pred cccccceeeehhhcCC-cceeecccccceeEEeecccc--------------ceeee-cccccceeeEEeccccceEEEc
Confidence 4899999999998876 599999999999999999998 55555 8999999999999999988884
Q ss_pred -cCCcEEEEEcC----CCCCCCCccCCccc--------------------cccCCCcceeeCCcCCceeeeEEEecCCCc
Q 021160 111 -NDELVYLFEKN----MGLGPSPLSLSPED--------------------LQKREEPQVYSGHRNSQTVKGVNFFGPNDE 165 (316)
Q Consensus 111 -~d~~i~iwd~~----~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 165 (316)
.|++.+||... .+....+...+.++ ..-+.++..+.+|... |.+..| -..|+
T Consensus 209 SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v--V~a~dW-L~gg~ 285 (481)
T KOG0300|consen 209 SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV--VSACDW-LAGGQ 285 (481)
T ss_pred cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc--eEehhh-hcCcc
Confidence 79999999832 11111111111111 1112355677888866 888888 67899
Q ss_pred EEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeee
Q 021160 166 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANK 243 (316)
Q Consensus 166 ~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~ 243 (316)
.+++++.|.+..+||+++|+++..+.+|....+.++-+|..+++++++.|-+.++||++..- +..+.+|.+.+....
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~v- 364 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVV- 364 (481)
T ss_pred eeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEE-
Confidence 99999999999999999999999999999999999999999999999999999999998543 667889999886665
Q ss_pred cCCCCceeEEecCCCeEEEEEecccCcceeE--Eeec--------ccccccccCCCCeEEEEeccCCCCCC
Q 021160 244 QGREDHSRITLTPDVIMHVLRLQRRQTLAYR--ERRY--------NAADFESDEEEGETYLLGFSDSDASS 304 (316)
Q Consensus 244 ~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~ 304 (316)
+.. +..+++++.|.++++|++++-..+... ..++ ....++..-+...|-++|++...-.-
T Consensus 365 F~~-dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR 434 (481)
T KOG0300|consen 365 FNT-DDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR 434 (481)
T ss_pred Eec-CCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCcccc
Confidence 333 457899999999999999875444332 1111 22234444566668888887665433
No 92
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=2.6e-24 Score=175.10 Aligned_cols=224 Identities=16% Similarity=0.176 Sum_probs=160.3
Q ss_pred CCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEE
Q 021160 30 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLI 108 (316)
Q Consensus 30 ~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 108 (316)
.++|...|.++++.|.| ..|++|+.|..|++||+...... .. ..+.+.......|.++.|++.|. +|+
T Consensus 163 l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas--------~~--~fr~l~P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDAS--------MR--SFRQLQPCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred ccCCceEEEEeeecCCC-ceeeeccccceEEEEeccccccc--------ch--hhhccCcccccccceeeecCCCCeEEE
Confidence 35789999999999999 89999999999999999865421 11 12233334456789999999997 555
Q ss_pred EecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe-eE
Q 021160 109 SYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LV 187 (316)
Q Consensus 109 s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~-~~ 187 (316)
.+...+.+++|-..........-.. -..-+..-+||... +++.+|++.+...+++++.||++++|++...+ ..
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQ----YI~Dm~nTKGHia~--lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~ 305 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQ----YIRDMYNTKGHIAE--LTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL 305 (641)
T ss_pred EecCcceeEEccCCceeeeeeccch----hhhhhhccCCceee--eeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence 5778889999976541000000000 00112233577765 99999955566789999999999999987543 33
Q ss_pred EEee-----cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC----CCCCcc--cceeeeecCCCCceeEEecC
Q 021160 188 RLMV-----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP----LPDNAE--KIMKANKQGREDHSRITLTP 256 (316)
Q Consensus 188 ~~~~-----~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~s~~~ 256 (316)
+.++ +..-.+++++|+|+++.||+|+.||.|.+|+......+. -..|.. .+.++ .++.++++|++-+.
T Consensus 306 qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi-~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 306 QVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSI-SFSYDGNYLLSRGF 384 (641)
T ss_pred eEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEE-EeccccchhhhccC
Confidence 3333 233478999999999999999999999999986544221 223444 45444 49999999999999
Q ss_pred CCeEEEEEecccCcc
Q 021160 257 DVIMHVLRLQRRQTL 271 (316)
Q Consensus 257 d~~~~~w~~~~~~~~ 271 (316)
|.++++||++.-+.+
T Consensus 385 D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKP 399 (641)
T ss_pred CCceeeeeccccccc
Confidence 999999999875444
No 93
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4e-24 Score=183.39 Aligned_cols=200 Identities=13% Similarity=0.179 Sum_probs=159.0
Q ss_pred CCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEE
Q 021160 30 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLI 108 (316)
Q Consensus 30 ~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~ 108 (316)
+.||.+.|..++|+.++ +|++++.|.+||||++...+ |+..+ .|.+.|+|++|+|-. ++++
T Consensus 365 f~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~--------------CL~~F--~HndfVTcVaFnPvDDryFi 426 (712)
T KOG0283|consen 365 FKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKE--------------CLKVF--SHNDFVTCVAFNPVDDRYFI 426 (712)
T ss_pred hhccchhheecccccCC--eeEeccccccEEeecCCCcc--------------eeeEE--ecCCeeEEEEecccCCCcEe
Confidence 36999999999999864 99999999999999999887 44444 689999999999954 6888
Q ss_pred Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE
Q 021160 109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 187 (316)
Q Consensus 109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~ 187 (316)
+| -|+.|+||++... +.+. +..-..- |++++| .|+|++.+.|+.+|.+++|+....++.
T Consensus 427 SGSLD~KvRiWsI~d~----------------~Vv~-W~Dl~~l--ITAvcy-~PdGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 427 SGSLDGKVRLWSISDK----------------KVVD-WNDLRDL--ITAVCY-SPDGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred ecccccceEEeecCcC----------------eeEe-ehhhhhh--heeEEe-ccCCceEEEEEeccEEEEEEccCCeEE
Confidence 86 5999999999775 3333 3333333 999999 999999999999999999999877766
Q ss_pred EEeec--C------ccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCC-CCCCCCCcccc-eeeeecCCCCceeEEecC
Q 021160 188 RLMVG--D------RHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD-FPPLPDNAEKI-MKANKQGREDHSRITLTP 256 (316)
Q Consensus 188 ~~~~~--~------~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~ 256 (316)
..+.- | ...|+.++|.|...- ++..+.|..|||+|.+... +..+.++...- ...+.+..++.++++++.
T Consensus 487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se 566 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE 566 (712)
T ss_pred EeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec
Confidence 54431 1 137999999986653 6666779999999998776 55666554332 234446779999999999
Q ss_pred CCeEEEEEecc
Q 021160 257 DVIMHVLRLQR 267 (316)
Q Consensus 257 d~~~~~w~~~~ 267 (316)
|..|.+|++..
T Consensus 567 Ds~VYiW~~~~ 577 (712)
T KOG0283|consen 567 DSWVYIWKNDS 577 (712)
T ss_pred CceEEEEeCCC
Confidence 99999999743
No 94
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=5.2e-23 Score=154.68 Aligned_cols=207 Identities=11% Similarity=0.096 Sum_probs=175.1
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 110 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 110 (316)
.||+.+++.+.++.+| .+|.+++.|.+..+|--..++ .+.+. .+|.+.|+|+....+.+.++++
T Consensus 7 ~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nGe--------------rlGty-~GHtGavW~~Did~~s~~liTG 70 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNGE--------------RLGTY-DGHTGAVWCCDIDWDSKHLITG 70 (327)
T ss_pred ccCccccceEEecCCC-cEEEEecCCCCceEEEecCCc--------------eeeee-cCCCceEEEEEecCCcceeeec
Confidence 4799999999999999 899999999999999987776 33333 8999999999999999988885
Q ss_pred -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-----CCeEEEEecc--
Q 021160 111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-----CGHLFIWKKK-- 182 (316)
Q Consensus 111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----dg~v~~wd~~-- 182 (316)
.|.++++||+.++ +.+..++... .|..+.| +++|.+++..++ .+.|.++|++
T Consensus 71 SAD~t~kLWDv~tG----------------k~la~~k~~~---~Vk~~~F-~~~gn~~l~~tD~~mg~~~~v~~fdi~~~ 130 (327)
T KOG0643|consen 71 SADQTAKLWDVETG----------------KQLATWKTNS---PVKRVDF-SFGGNLILASTDKQMGYTCFVSVFDIRDD 130 (327)
T ss_pred cccceeEEEEcCCC----------------cEEEEeecCC---eeEEEee-ccCCcEEEEEehhhcCcceEEEEEEccCC
Confidence 7999999999999 6776666432 3999999 999999888765 4579999987
Q ss_pred -----CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEec
Q 021160 183 -----GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLT 255 (316)
Q Consensus 183 -----~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 255 (316)
..+++..+..+.+.++.+-|.|-+++|++|.+||.|.+||+++++ +.....|...+..+ +.+++..++++++
T Consensus 131 ~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~-q~s~d~T~FiT~s 209 (327)
T KOG0643|consen 131 SSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDL-QFSRDRTYFITGS 209 (327)
T ss_pred hhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccc-cccCCcceEEecc
Confidence 455677888888999999999999999999999999999999875 55556677766444 4889999999999
Q ss_pred CCCeEEEEEecccCcceeE
Q 021160 256 PDVIMHVLRLQRRQTLAYR 274 (316)
Q Consensus 256 ~d~~~~~w~~~~~~~~~~~ 274 (316)
.|.+-++||+.+-+.+...
T Consensus 210 ~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 210 KDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred cCccceeeeccceeeEEEe
Confidence 9999999999886554433
No 95
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1e-23 Score=185.49 Aligned_cols=256 Identities=17% Similarity=0.241 Sum_probs=194.3
Q ss_pred CccceEEEEECCCCCcEEEEEe--cCCcEEEEeCcCCc----ccCCCCCCCCceecccccccCCCcccEEEEEEccCCCe
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCH----WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL 106 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~--~dg~v~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 106 (316)
+...|.++..+|++ ..+++|+ .|+.+++|+...-- ...+ ..+..+ .....|.+.|+|+.|+|+|++
T Consensus 12 ~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~-~l~k~l------~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNE-NLPKHL------CTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhc-ccchhh------eeeccccCceeEEEECCCCCe
Confidence 34668999999999 8999999 89999999976211 0000 011111 122679999999999999999
Q ss_pred EEEe-cCCcEEEEEcCCCCCCCCcc---CCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc
Q 021160 107 LISY-NDELVYLFEKNMGLGPSPLS---LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 182 (316)
Q Consensus 107 l~s~-~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~ 182 (316)
||+| .|+.|.||..... +..... -...+...++....+.+|... |..++| +|++.++++++.|++|.+|+..
T Consensus 84 lAsGSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D--V~Dv~W-sp~~~~lvS~s~DnsViiwn~~ 159 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVVSILRGHDSD--VLDVNW-SPDDSLLVSVSLDNSVIIWNAK 159 (942)
T ss_pred EeeccCcceEEEeeeccc-CCcccccccccccccceeeEEEEEecCCCc--cceecc-CCCccEEEEecccceEEEEccc
Confidence 9997 5888999998741 111111 123345566788889999977 999999 9999999999999999999999
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-----------------------------------
Q 021160 183 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----------------------------------- 227 (316)
Q Consensus 183 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~----------------------------------- 227 (316)
+.+++..+.+|.+.|..+.|.|-|++||+-+.|++|+||.+..-.
T Consensus 160 tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 160 TFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred cceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 999999999999999999999999999999999999999954200
Q ss_pred ------------------CCCCCCCcccceeeeecCC-----C--------Cc----eeEEecCCCeEEEEEecccCcce
Q 021160 228 ------------------FPPLPDNAEKIMKANKQGR-----E--------DH----SRITLTPDVIMHVLRLQRRQTLA 272 (316)
Q Consensus 228 ------------------~~~~~~~~~~~~~~~~~~~-----~--------~~----~~~s~~~d~~~~~w~~~~~~~~~ 272 (316)
-..|-+|..++ .+..+.+ . ++ .+++++.|+.+.||.......+.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~p~-evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSAPV-EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCCce-EEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 01122555544 2222332 1 11 57789999999999986653332
Q ss_pred e-----------EEeecccccccccCCCCeEEEEeccCCC
Q 021160 273 Y-----------RERRYNAADFESDEEEGETYLLGFSDSD 301 (316)
Q Consensus 273 ~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 301 (316)
. ..++|++..+-..+-||.|+++.|+.++
T Consensus 319 vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 319 VIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred hhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 2 2689999999999999999999998764
No 96
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.8e-25 Score=188.47 Aligned_cols=200 Identities=19% Similarity=0.265 Sum_probs=177.3
Q ss_pred CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 111 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 111 (316)
|...|.++..-..+ +.+++|+.|..+-+|.+.... +... +.+|..+|.++.|++...+|+++ .
T Consensus 27 hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~--------------~i~S-~~~hespIeSl~f~~~E~Llaagsa 90 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPN--------------AITS-LTGHESPIESLTFDTSERLLAAGSA 90 (825)
T ss_pred hhhhhceeeeeccc-eeeccCCCceeeccccccCCc--------------hhhe-eeccCCcceeeecCcchhhhccccc
Confidence 67788888885555 899999999999999987543 2222 38999999999999998888875 7
Q ss_pred CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160 112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 191 (316)
Q Consensus 112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~ 191 (316)
+|+|++||++.. +.++++.+|... +.++.| +|-+.|.+.|+.|..+++||.+...+...+.
T Consensus 91 sgtiK~wDleeA----------------k~vrtLtgh~~~--~~sv~f-~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~ 151 (825)
T KOG0267|consen 91 SGTIKVWDLEEA----------------KIVRTLTGHLLN--ITSVDF-HPYGEFFASGSTDTDLKIWDIRKKGCSHTYK 151 (825)
T ss_pred CCceeeeehhhh----------------hhhhhhhccccC--cceeee-ccceEEeccccccccceehhhhccCceeeec
Confidence 999999999988 788999999977 999998 9999999999999999999999888999999
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
+|...|..+.|+|+|++++.+++|.+++|||...++ ...+..|...+..+. +++..-++.+|+.|.++++|++++-
T Consensus 152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle-~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLE-FHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccc-cCchhhhhccCCCCceeeeecccee
Confidence 999999999999999999999999999999999888 678888888887766 7777788999999999999999864
No 97
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=4.8e-23 Score=154.36 Aligned_cols=235 Identities=10% Similarity=0.133 Sum_probs=190.0
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE-
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS- 109 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s- 109 (316)
+|...|.+++|+.+| ..+++|+.|+++.+|+++..+. .......+|.+.|..++|+|... ++++
T Consensus 18 ~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~-------------~~~~~~~gh~~svdql~w~~~~~d~~ata 83 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRF-------------RKELVYRGHTDSVDQLCWDPKHPDLFATA 83 (313)
T ss_pred hhhhcceEEEEcccC-ceeeecccCCceEEEEecchhh-------------hhhhcccCCCcchhhheeCCCCCcceEEe
Confidence 688999999999999 8999999999999999986652 23334478999999999999774 6665
Q ss_pred ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160 110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189 (316)
Q Consensus 110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~ 189 (316)
+.|++|++||.+.+ ++.......... +. +.| +|+|.+++.++.|..|.+.|.++-+....
T Consensus 84 s~dk~ir~wd~r~~----------------k~~~~i~~~~en--i~-i~w-sp~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSG----------------KCTARIETKGEN--IN-ITW-SPDGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred cCCceEEEEEeccC----------------cEEEEeeccCcc--eE-EEE-cCCCCEEEEecCcccEEEEEecccceeeh
Confidence 68999999999998 677776655433 43 566 89999999999999999999998887665
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
.+ ....+..++|+-++.+|+..+.-|.|.|......+ +..+..|....+.+. ++|+++++++|+.|..+.+||+++-
T Consensus 144 ~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~-f~p~GryfA~GsADAlvSLWD~~EL 221 (313)
T KOG1407|consen 144 EQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIE-FDPDGRYFATGSADALVSLWDVDEL 221 (313)
T ss_pred hc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEE-ECCCCceEeeccccceeeccChhHh
Confidence 54 34567889999777776655557999999988776 888889998776666 8999999999999999999998753
Q ss_pred ---------CcceeE-EeecccccccccCCCCeEEEEeccCCCC
Q 021160 269 ---------QTLAYR-ERRYNAADFESDEEEGETYLLGFSDSDA 302 (316)
Q Consensus 269 ---------~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 302 (316)
.=++.. .|+.++.++++.+++-.|-+.....|+.
T Consensus 222 iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 222 ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred hhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCe
Confidence 122222 7899999999999997777777777653
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.4e-24 Score=179.76 Aligned_cols=241 Identities=18% Similarity=0.317 Sum_probs=186.3
Q ss_pred CccceE---EEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160 33 NSIRLN---AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 109 (316)
Q Consensus 33 h~~~v~---~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 109 (316)
|...|. ++..++.+.++|++|+.||.|++|++....- .+-.. +...+ ..|.+.|..++...+++-|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~-------~~s~~-~~asm-e~HsDWVNDiiL~~~~~tlIS 90 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN-------EPSTP-YIASM-EHHSDWVNDIILCGNGKTLIS 90 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccC-------Ccccc-hhhhh-hhhHhHHhhHHhhcCCCceEE
Confidence 455566 6666766658999999999999999975541 00000 12222 789999999999999986666
Q ss_pred -ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe--e
Q 021160 110 -YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--L 186 (316)
Q Consensus 110 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~--~ 186 (316)
+.|.+|++|+..... .-+..++..|.+. |.|+++..++..++|+|+-|+.|++||++++. .
T Consensus 91 ~SsDtTVK~W~~~~~~--------------~~c~stir~H~DY--Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l 154 (735)
T KOG0308|consen 91 ASSDTTVKVWNAHKDN--------------TFCMSTIRTHKDY--VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATL 154 (735)
T ss_pred ecCCceEEEeecccCc--------------chhHhhhhcccch--heeeeecccCceeEEecCCCccEEEEEccCcchhh
Confidence 589999999987651 0256778889866 99999856778899999999999999999772 2
Q ss_pred EE--------Eee-cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecC
Q 021160 187 VR--------LMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTP 256 (316)
Q Consensus 187 ~~--------~~~-~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 256 (316)
+. .+. ++...|.+++.++.+..|++|+..+.+++||.++.+ +..+.+|.+.+..+. ...++..++++++
T Consensus 155 ~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll-~~dDGt~~ls~sS 233 (735)
T KOG0308|consen 155 VASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLL-VNDDGTRLLSASS 233 (735)
T ss_pred hhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEE-EcCCCCeEeecCC
Confidence 22 233 778899999999999999999999999999999987 888999999885555 7889999999999
Q ss_pred CCeEEEEEecccCcc---------eeE-EeecccccccccCCCCeEEEEeccC
Q 021160 257 DVIMHVLRLQRRQTL---------AYR-ERRYNAADFESDEEEGETYLLGFSD 299 (316)
Q Consensus 257 d~~~~~w~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~v~~~~~~~ 299 (316)
||+|++|++..++=+ ++. ..++.-..+.+++.+|-||..++.+
T Consensus 234 DgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 234 DGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred CceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 999999999754221 232 3445556666777777777777765
No 99
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-22 Score=156.00 Aligned_cols=205 Identities=13% Similarity=0.185 Sum_probs=154.9
Q ss_pred ccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeE
Q 021160 28 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 107 (316)
Q Consensus 28 ~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 107 (316)
-+++||...|++++.+|-+ ..+++++.|++|++||++..++ ...+ +...-...+|.|+|-++
T Consensus 94 RYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~c--------------qg~l---~~~~~pi~AfDp~GLif 155 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKC--------------QGLL---NLSGRPIAAFDPEGLIF 155 (311)
T ss_pred EEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCC--------------ceEE---ecCCCcceeECCCCcEE
Confidence 3446799999999999998 8999999999999999997763 2222 11223467899999998
Q ss_pred EEec-CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC-cCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe
Q 021160 108 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 185 (316)
Q Consensus 108 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~ 185 (316)
|.+. ...|++||++.... .+..++.-. ......+.+.| +|+|++|+.++..+.+++.|.-+|.
T Consensus 156 A~~~~~~~IkLyD~Rs~dk--------------gPF~tf~i~~~~~~ew~~l~F-S~dGK~iLlsT~~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 156 ALANGSELIKLYDLRSFDK--------------GPFTTFSITDNDEAEWTDLEF-SPDGKSILLSTNASFIYLLDAFDGT 220 (311)
T ss_pred EEecCCCeEEEEEecccCC--------------CCceeEccCCCCccceeeeEE-cCCCCEEEEEeCCCcEEEEEccCCc
Confidence 8874 44999999987521 233334322 22234899999 9999999999999999999999999
Q ss_pred eEEEeecCccce---EEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCC-CcccceeeeecCCCCceeEEecCCCeE
Q 021160 186 LVRLMVGDRHVV---NQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD-NAEKIMKANKQGREDHSRITLTPDVIM 260 (316)
Q Consensus 186 ~~~~~~~~~~~v---~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~d~~~ 260 (316)
.+..+..+...- ...+|+|+++++++|+.||+|.+|+++++. ...+.+ +..++ .+..+. +++.+-.+.+..+
T Consensus 221 ~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~-~~~~fn--P~~~mf~sa~s~l 297 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPV-SCVRFN--PRYAMFVSASSNL 297 (311)
T ss_pred EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCc-cccccC--CceeeeeecCceE
Confidence 999988766432 578899999999999999999999999887 555555 33433 232233 3566777778888
Q ss_pred EEEEeccc
Q 021160 261 HVLRLQRR 268 (316)
Q Consensus 261 ~~w~~~~~ 268 (316)
-+|-....
T Consensus 298 ~fw~p~~~ 305 (311)
T KOG1446|consen 298 VFWLPDED 305 (311)
T ss_pred EEEecccc
Confidence 88865443
No 100
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.9e-23 Score=175.51 Aligned_cols=250 Identities=14% Similarity=0.192 Sum_probs=197.4
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEE-EEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNA-IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~-~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
+|++++|+-+..+..+..... +|.+-|.. +++.+...-.+++|+.|+++.+|.+....
T Consensus 34 d~t~~vw~~~~~~~l~~~~~~---------~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~------------ 92 (745)
T KOG0301|consen 34 DGTVKVWAKKGKQYLETHAFE---------GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE------------ 92 (745)
T ss_pred CCceeeeeccCcccccceecc---------cCcceeeccceeccccCcceEeecccceEEEEecCCCC------------
Confidence 588999998777665543332 24556665 78876442569999999999999998664
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
+.....+|...|.+++...++. +++ +.|.++++|.... ....+.+|+.. |+.+++
T Consensus 93 ---P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~------------------l~~~l~gH~as--VWAv~~ 148 (745)
T KOG0301|consen 93 ---PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE------------------LVYSLQGHTAS--VWAVAS 148 (745)
T ss_pred ---chhhhhccccceeeeecCCcCc-eEecccccceEEecchh------------------hhcccCCcchh--eeeeee
Confidence 2333389999999999888888 555 5799999998764 45668999977 999998
Q ss_pred ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccce
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIM 239 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 239 (316)
-|.+ .+++|+.|.+|++|.- ++++++|.+|++.|..+++-|++ .|++++.||.|+.|++....+.++.+|..-++
T Consensus 149 -l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vY 223 (745)
T KOG0301|consen 149 -LPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVY 223 (745)
T ss_pred -cCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEE
Confidence 4555 8899999999999976 78899999999999999998875 47899999999999998888999999999998
Q ss_pred eeeecCCCCceeEEecCCCeEEEEEecccCc-------ceeEEeecccccccccCCCCeEEEEeccCCCC
Q 021160 240 KANKQGREDHSRITLTPDVIMHVLRLQRRQT-------LAYRERRYNAADFESDEEEGETYLLGFSDSDA 302 (316)
Q Consensus 240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 302 (316)
... ...++..+++++.|+++++|+...-.+ .+|....-...++..+..||+|++|-.+....
T Consensus 224 sis-~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 224 SIS-MALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EEE-ecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEeccccc
Confidence 887 566778999999999999998764211 12222222356788889999999998875543
No 101
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.6e-23 Score=166.39 Aligned_cols=235 Identities=14% Similarity=0.163 Sum_probs=174.1
Q ss_pred CceeeEEEEeeCC-CcceEEEecccccc---------ccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCccc
Q 021160 1 MVLFNMLFDLRSD-SATRLFYCSSFSEN---------SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY 70 (316)
Q Consensus 1 ~~g~v~vwd~~~~-~~~~~~~~~~~~~~---------~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~ 70 (316)
|+-.|.||||.-. ...+.+.+...... ....||+..|.+++|+..-.+.||+|+.|.+|++||+.+++
T Consensus 200 mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~-- 277 (463)
T KOG0270|consen 200 MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK-- 277 (463)
T ss_pred cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC--
Confidence 4557999999632 34455555422111 11247999999999999877899999999999999999997
Q ss_pred CCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC
Q 021160 71 SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH 148 (316)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (316)
+...+ ..|...|.+++|+|.. .+|++| .|++|.+.|.+... ..-..++ .
T Consensus 278 ------------p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~---------------~s~~~wk-~ 328 (463)
T KOG0270|consen 278 ------------PKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS---------------NSGKEWK-F 328 (463)
T ss_pred ------------cceeh-hhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc---------------ccCceEE-e
Confidence 44444 6789999999999976 477775 69999999998531 1222233 2
Q ss_pred cCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC-CeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCC
Q 021160 149 RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT 226 (316)
Q Consensus 149 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~ 226 (316)
... |..++|.+.....++++++||+|+-+|++. ++++.++.+|.+.|.++++++..+. ++|++.|+.|++|++...
T Consensus 329 ~g~--VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 329 DGE--VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred ccc--eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 223 888999555566788899999999999986 4899999999999999999987765 889999999999998876
Q ss_pred CCCCCCCCcccc--eeeeecCCC-CceeEEecCCCeEEEEEeccc
Q 021160 227 DFPPLPDNAEKI--MKANKQGRE-DHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 227 ~~~~~~~~~~~~--~~~~~~~~~-~~~~~s~~~d~~~~~w~~~~~ 268 (316)
.......|...+ +.+....++ ...++.++..+.+++||+.+.
T Consensus 407 ~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 407 SPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 544443343322 222223333 446677777788999998765
No 102
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.9e-23 Score=158.68 Aligned_cols=202 Identities=16% Similarity=0.182 Sum_probs=159.9
Q ss_pred cCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC--e
Q 021160 29 KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--L 106 (316)
Q Consensus 29 ~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~ 106 (316)
.+..|.+.|++++.+ + .++|+|+.|.+|+|||+++.. ....+ ..|.+.|+++.|.+.-. .
T Consensus 38 ~~~aH~~sitavAVs--~-~~~aSGssDetI~IYDm~k~~--------------qlg~l-l~HagsitaL~F~~~~S~sh 99 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--G-PYVASGSSDETIHIYDMRKRK--------------QLGIL-LSHAGSITALKFYPPLSKSH 99 (362)
T ss_pred cccccccceeEEEec--c-eeEeccCCCCcEEEEeccchh--------------hhcce-eccccceEEEEecCCcchhh
Confidence 345699999999997 4 799999999999999999775 22233 67899999999999863 4
Q ss_pred EEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe
Q 021160 107 LIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 185 (316)
Q Consensus 107 l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~ 185 (316)
|++ +.||.|.+|+...- ..+..+++|... |+.++. +|.+++.++.+.|+.+++||+-.|+
T Consensus 100 LlS~sdDG~i~iw~~~~W----------------~~~~slK~H~~~--Vt~lsi-HPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVGSW----------------ELLKSLKAHKGQ--VTDLSI-HPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred eeeecCCCcEEEEEcCCe----------------EEeeeecccccc--cceeEe-cCCCceEEEEcCCceeeeehhhcCc
Confidence 555 68999999999877 788999999987 999999 8999999999999999999987765
Q ss_pred eEEEeecC---------------------------------------ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160 186 LVRLMVGD---------------------------------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 226 (316)
Q Consensus 186 ~~~~~~~~---------------------------------------~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~ 226 (316)
.-..+.-. ...+.++.|- ++..|++|+.|+.|++||....
T Consensus 161 ~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~ 239 (362)
T KOG0294|consen 161 VAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSD 239 (362)
T ss_pred cceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCC
Confidence 32211100 0123444443 4557888888999999999876
Q ss_pred C-CCCCCCCcccceeeeec-CCCCceeEEecCCCeEEEEEeccc
Q 021160 227 D-FPPLPDNAEKIMKANKQ-GREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 227 ~-~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
. ...+..|...+-.+..+ .+++.++++.++||.|++||+...
T Consensus 240 ~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 240 TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 5 67778899888666533 347789999999999999998765
No 103
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9.4e-23 Score=156.98 Aligned_cols=214 Identities=15% Similarity=0.258 Sum_probs=158.8
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 109 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 109 (316)
+||.+.|++++|+.+| .+|++++.|+.|++|+++.-.... . .+++.... .+.-+.+.|.||-+ ++++
T Consensus 83 KgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~e--------H-r~~R~nve--~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKE--------H-RCIRQNVE--YDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred hccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhh--------h-hHhhcccc--CCCceEEEECCCcceEEEE
Confidence 6899999999999999 999999999999999998543110 0 01211111 23567899999987 5555
Q ss_pred e-cCCcEEEEEcCCCCC-CCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE
Q 021160 110 Y-NDELVYLFEKNMGLG-PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 187 (316)
Q Consensus 110 ~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~ 187 (316)
. ...++++|.+..... ..+.....++ ....-..|... +..+-. ...+.+|++++.|..|.+|+++ |+.+
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D-----~~~f~~kh~v~--~i~iGi-A~~~k~imsas~dt~i~lw~lk-Gq~L 221 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHID-----NLEFERKHQVD--IINIGI-AGNAKYIMSASLDTKICLWDLK-GQLL 221 (420)
T ss_pred EccCCEEEEEEeeecccCCCCccccccc-----ccccchhcccc--eEEEee-cCCceEEEEecCCCcEEEEecC-Ccee
Confidence 4 678899998865421 1111111111 11111223322 555665 6778999999999999999999 9999
Q ss_pred EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC---CC------CCCCCCCCcccceeeeecCCCCceeEEecCCC
Q 021160 188 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM---PT------DFPPLPDNAEKIMKANKQGREDHSRITLTPDV 258 (316)
Q Consensus 188 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~---~~------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~ 258 (316)
..+......-+..+.+|+|+++++++..-.|++|.+- .+ +...+.+|...+...+ ++++++.+++.+.||
T Consensus 222 ~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~a-Fsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAA-FSNSSTRAVTVSKDG 300 (420)
T ss_pred eeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeee-eCCCcceeEEEecCC
Confidence 9888776777888999999999999999999999863 22 2567889999987777 899999999999999
Q ss_pred eEEEEEec
Q 021160 259 IMHVLRLQ 266 (316)
Q Consensus 259 ~~~~w~~~ 266 (316)
.+++||..
T Consensus 301 ~wriwdtd 308 (420)
T KOG2096|consen 301 KWRIWDTD 308 (420)
T ss_pred cEEEeecc
Confidence 99999975
No 104
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=4.1e-22 Score=149.87 Aligned_cols=246 Identities=15% Similarity=0.150 Sum_probs=174.1
Q ss_pred cccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc
Q 021160 23 SFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN 102 (316)
Q Consensus 23 ~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (316)
+.+......||.+.|.|+..+-+. ..+++|+.|.++++||+++++.+ ... ....+|..+.|++
T Consensus 41 nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~l--------------a~~--k~~~~Vk~~~F~~ 103 (327)
T KOG0643|consen 41 NGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQL--------------ATW--KTNSPVKRVDFSF 103 (327)
T ss_pred CCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcEE--------------EEe--ecCCeeEEEeecc
Confidence 334444446899999999999988 89999999999999999999832 222 2256889999999
Q ss_pred CCCeEEEec------CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeE
Q 021160 103 TSELLISYN------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHL 176 (316)
Q Consensus 103 ~~~~l~s~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v 176 (316)
+|++++.+. .+.|.++|++.... +.....+...+..+... ++.+-| +|-+++|++|.++|.|
T Consensus 104 ~gn~~l~~tD~~mg~~~~v~~fdi~~~~~---------~~~s~ep~~kI~t~~sk--it~a~W-g~l~~~ii~Ghe~G~i 171 (327)
T KOG0643|consen 104 GGNLILASTDKQMGYTCFVSVFDIRDDSS---------DIDSEEPYLKIPTPDSK--ITSALW-GPLGETIIAGHEDGSI 171 (327)
T ss_pred CCcEEEEEehhhcCcceEEEEEEccCChh---------hhcccCceEEecCCccc--eeeeee-cccCCEEEEecCCCcE
Confidence 999665543 45699999985421 11112455666666654 888888 9999999999999999
Q ss_pred EEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEec
Q 021160 177 FIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT 255 (316)
Q Consensus 177 ~~wd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 255 (316)
..||+++| +.+.....|...|+.++++|+..+++++|.|.+-++||..+..+..-..-..++ +.+..+|-...++.++
T Consensus 172 s~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~Pv-N~aaisP~~d~VilgG 250 (327)
T KOG0643|consen 172 SIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPV-NTAAISPLLDHVILGG 250 (327)
T ss_pred EEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccc-cceecccccceEEecC
Confidence 99999998 455666789999999999999999999999999999999887633222233333 3333555433444433
Q ss_pred CCCeEEEEEec-----------------------ccCcceeE-EeecccccccccCCCCeEEEEecc
Q 021160 256 PDVIMHVLRLQ-----------------------RRQTLAYR-ERRYNAADFESDEEEGETYLLGFS 298 (316)
Q Consensus 256 ~d~~~~~w~~~-----------------------~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~ 298 (316)
.....-|--.. .+-.++.. .+.|++...+++.++|.|-+.-|.
T Consensus 251 GqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 251 GQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred CceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 33222221111 11112222 677888888888888887776554
No 105
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=1.7e-24 Score=171.56 Aligned_cols=235 Identities=14% Similarity=0.222 Sum_probs=190.8
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEe
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY 110 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~ 110 (316)
-|.+.|..+.|-++. ..|++|+.|..|++|++...+. .......+..++|+++.|.++++ .|+++
T Consensus 173 ~h~gev~~v~~l~~s-dtlatgg~Dr~Ik~W~v~~~k~-------------~~~~tLaGs~g~it~~d~d~~~~~~iAas 238 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNS-DTLATGGSDRIIKLWNVLGEKS-------------ELISTLAGSLGNITSIDFDSDNKHVIAAS 238 (459)
T ss_pred ccccccceeEEccCc-chhhhcchhhhhhhhhcccchh-------------hhhhhhhccCCCcceeeecCCCceEEeec
Confidence 488999999999986 7999999999999999986652 22223366678899999999998 55557
Q ss_pred cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160 111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 190 (316)
Q Consensus 111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~ 190 (316)
.|+.+++|++... ....++.+|.+. |+++.| ......+++|+.|.++++||+..+.+..++
T Consensus 239 ~d~~~r~Wnvd~~----------------r~~~TLsGHtdk--Vt~ak~-~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 239 NDKNLRLWNVDSL----------------RLRHTLSGHTDK--VTAAKF-KLSHSRVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred CCCceeeeeccch----------------hhhhhhcccccc--eeeehh-hccccceeeccccchhhhhhhhhhheeccc
Confidence 8999999999988 788999999977 999998 666666999999999999999998887765
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160 191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 269 (316)
Q Consensus 191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~ 269 (316)
.. .+.+..++.+ ...++++..|++||+||.++.. ...++.+. .+..+. .++++..+++++.|.++.+.|+++.+
T Consensus 300 l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~-ls~~g~~lLsssRDdtl~viDlRt~e 374 (459)
T KOG0288|consen 300 LP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLD-LSMDGLELLSSSRDDTLKVIDLRTKE 374 (459)
T ss_pred cc-cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEe-eccCCeEEeeecCCCceeeeeccccc
Confidence 42 3456667665 4568899999999999999887 55555443 554444 78899999999999999999998764
Q ss_pred ccee--------------EEeecccccccccCCCCeEEEEeccCCCCCC
Q 021160 270 TLAY--------------RERRYNAADFESDEEEGETYLLGFSDSDASS 304 (316)
Q Consensus 270 ~~~~--------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 304 (316)
.... ..++|+..+++.++.+|+||+|+...++-+.
T Consensus 375 I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 375 IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK 423 (459)
T ss_pred EEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEE
Confidence 3321 2599999999999999999999999887543
No 106
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1e-24 Score=183.91 Aligned_cols=192 Identities=17% Similarity=0.299 Sum_probs=165.1
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 110 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 110 (316)
.+|..+|.++.|++.. .+|++|+.+|+|++||++..+ ..+++ .+|...+.++.|+|-+.+.+++
T Consensus 67 ~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk--------------~vrtL-tgh~~~~~sv~f~P~~~~~a~g 130 (825)
T KOG0267|consen 67 TGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAK--------------IVRTL-TGHLLNITSVDFHPYGEFFASG 130 (825)
T ss_pred eccCCcceeeecCcch-hhhcccccCCceeeeehhhhh--------------hhhhh-hccccCcceeeeccceEEeccc
Confidence 5799999999999988 899999999999999999876 33444 8899999999999999999885
Q ss_pred -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160 111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189 (316)
Q Consensus 111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~ 189 (316)
.|..+++||.+.. .+.+.+.+|... +..+.| +|+|.+++.|++|..+++||...|+.+..
T Consensus 131 Stdtd~~iwD~Rk~----------------Gc~~~~~s~~~v--v~~l~l-sP~Gr~v~~g~ed~tvki~d~~agk~~~e 191 (825)
T KOG0267|consen 131 STDTDLKIWDIRKK----------------GCSHTYKSHTRV--VDVLRL-SPDGRWVASGGEDNTVKIWDLTAGKLSKE 191 (825)
T ss_pred cccccceehhhhcc----------------CceeeecCCcce--eEEEee-cCCCceeeccCCcceeeeecccccccccc
Confidence 6999999999865 588999998865 999999 99999999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCC
Q 021160 190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDV 258 (316)
Q Consensus 190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~ 258 (316)
|..|.+.+..+.|+|..-.+++|+.|+++++||+++.. +.........+.... +.+++..+.++....
T Consensus 192 f~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~-fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 192 FKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLA-FNPDGKIVLSGEQIS 260 (825)
T ss_pred cccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeee-ecCCceeeecCchhh
Confidence 99999999999999999889999999999999999766 444444445554444 666666666665543
No 107
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=6.9e-23 Score=164.62 Aligned_cols=248 Identities=16% Similarity=0.168 Sum_probs=191.4
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCC-CCCCCCce-eccccccc-CCCcccEEEEEEccCCCeE
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSP-ISSDTPVD-TFCPRHLI-GKNNIHITGLAYSNTSELL 107 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~-~~~~~~~~-~~~~~~~~-~~~~~~i~~~~~~~~~~~l 107 (316)
..|..+|.+++++|++ .+.++++.+++|.-|++.+++-... +..+.-.. ...+.... .+|...+.+++.++||++|
T Consensus 139 ~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred ccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence 4689999999999999 8999999999999999998874311 11110011 11111111 3788999999999999999
Q ss_pred EEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee
Q 021160 108 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 186 (316)
Q Consensus 108 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~ 186 (316)
+++ .|..|.||+.++. ..++.+.+|... |.+++| -.....+++++.|+.+++|+++....
T Consensus 218 atgg~d~~v~Iw~~~t~----------------ehv~~~~ghr~~--V~~L~f-r~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTL----------------EHVKVFKGHRGA--VSSLAF-RKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred EecCCCceEEEecCccc----------------chhhcccccccc--eeeeee-ecCccceeeeecCCceEEEehhHhHH
Confidence 996 6999999999998 788999999977 999999 66677899999999999999999999
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160 187 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 266 (316)
Q Consensus 187 ~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~ 266 (316)
+.++.+|.+.|..+.....++.+..|+.|+++++|++.......+.++...+ .++. -.+...+++|+.+|.|-+|++.
T Consensus 279 vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~si-dcv~-~In~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSI-DCVA-FINDEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred HHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCe-eeEE-EecccceeeccCCceEEEeeec
Confidence 9999999999999988877877777779999999999666555555565444 2221 2245689999999999999998
Q ss_pred ccCcceeE----------------------EeecccccccccCCCCeEEEEeccCC
Q 021160 267 RRQTLAYR----------------------ERRYNAADFESDEEEGETYLLGFSDS 300 (316)
Q Consensus 267 ~~~~~~~~----------------------~~~~~~~~~~~~~~~~~v~~~~~~~~ 300 (316)
+...+-.. ..-|....+++++.+|-|-+|..+++
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 76433221 11223344566777788888888777
No 108
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=2.1e-23 Score=165.40 Aligned_cols=222 Identities=9% Similarity=0.059 Sum_probs=173.2
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+-.|++|+....++...-.. .|-.++|+++.|.+++ ..+++++.|+.+++|++...+
T Consensus 196 Dr~Ik~W~v~~~k~~~~~tL---------aGs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~~r------------- 252 (459)
T KOG0288|consen 196 DRIIKLWNVLGEKSELISTL---------AGSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDSLR------------- 252 (459)
T ss_pred hhhhhhhhcccchhhhhhhh---------hccCCCcceeeecCCC-ceEEeecCCCceeeeeccchh-------------
Confidence 34578888876663222222 1346789999999999 899999999999999999886
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
...++ .+|.+.|+++.|......++++ .|.+|++||+... .+.+++..... +.++..
T Consensus 253 -~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~----------------~C~kt~l~~S~---cnDI~~- 310 (459)
T KOG0288|consen 253 -LRHTL-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA----------------YCSKTVLPGSQ---CNDIVC- 310 (459)
T ss_pred -hhhhh-cccccceeeehhhccccceeeccccchhhhhhhhhh----------------heecccccccc---ccceEe-
Confidence 33333 7899999999998877667775 6999999999876 44444433222 566665
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCC-CCCCC---cc
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLPDN---AE 236 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~---~~ 236 (316)
+ ...+++|..|++|++||.+++.+....+.+. .|+++..++++..+++++.|.++.+.|+++..+. .+... ..
T Consensus 311 ~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~a 387 (459)
T KOG0288|consen 311 S--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCA 387 (459)
T ss_pred c--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccc
Confidence 3 6678899999999999999999999998775 9999999999999999999999999999998733 22211 11
Q ss_pred cceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160 237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~ 271 (316)
.-.....++|++.++++|+.||.+++|++.+++..
T Consensus 388 sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE 422 (459)
T KOG0288|consen 388 SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE 422 (459)
T ss_pred cccceeEECCCCceeeeccCCCcEEEEEccCceEE
Confidence 11456668999999999999999999999887443
No 109
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.3e-22 Score=163.25 Aligned_cols=207 Identities=12% Similarity=0.112 Sum_probs=168.6
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 112 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 112 (316)
+++|.+++-+|.| .+++.|+..|.+++|.+.+|.+ +..+ .+|-.+|+|+.|+.||.+|+++ .|
T Consensus 81 Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~L--------------L~v~-~aHYQ~ITcL~fs~dgs~iiTgskD 144 (476)
T KOG0646|consen 81 PGPVHALASSNLG-YFLLAGTISGNLYLWELSSGIL--------------LNVL-SAHYQSITCLKFSDDGSHIITGSKD 144 (476)
T ss_pred ccceeeeecCCCc-eEEEeecccCcEEEEEeccccH--------------HHHH-HhhccceeEEEEeCCCcEEEecCCC
Confidence 6789999999999 8888888999999999999973 3333 8899999999999999988885 79
Q ss_pred CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC--CCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160 113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP--NDEYVMSGSDCGHLFIWKKKGGKLVRLM 190 (316)
Q Consensus 113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~v~~wd~~~~~~~~~~ 190 (316)
|.|.+|.+..-..+.... ..++...|..|.-. |+++.. .+ ...++++++.|.++++||+..|.++..+
T Consensus 145 g~V~vW~l~~lv~a~~~~-------~~~p~~~f~~Htls--ITDl~i-g~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 145 GAVLVWLLTDLVSADNDH-------SVKPLHIFSDHTLS--ITDLQI-GSGGTNARLYTASEDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred ccEEEEEEEeecccccCC-------CccceeeeccCcce--eEEEEe-cCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence 999999986542221111 23677889999966 998876 43 3568999999999999999999998877
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-----------------CCCCCCCcc--cceeeeecCCCCcee
Q 021160 191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----------------FPPLPDNAE--KIMKANKQGREDHSR 251 (316)
Q Consensus 191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-----------------~~~~~~~~~--~~~~~~~~~~~~~~~ 251 (316)
. ....+.+++.+|.+..+..|+.+|.|.+.++.... +..+.+|.. .+..++ .+.|+.++
T Consensus 215 ~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa-is~DgtlL 292 (476)
T KOG0646|consen 215 T-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA-ISTDGTLL 292 (476)
T ss_pred e-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE-EecCccEE
Confidence 5 45689999999999999999999999888764321 334557776 554444 88999999
Q ss_pred EEecCCCeEEEEEeccc
Q 021160 252 ITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 252 ~s~~~d~~~~~w~~~~~ 268 (316)
++|+.||.+.+||+..+
T Consensus 293 lSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 293 LSGDEDGKVCVWDIYSK 309 (476)
T ss_pred EeeCCCCCEEEEecchH
Confidence 99999999999998765
No 110
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.9e-23 Score=169.77 Aligned_cols=224 Identities=10% Similarity=0.101 Sum_probs=181.0
Q ss_pred eeeEEEEeeCCCc-ceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 3 LFNMLFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 3 g~v~vwd~~~~~~-~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
|.|+|||+..... .++-.+.... ...-|.++...|++ +.|++|++-.++.|||+.....
T Consensus 440 gcVKVWdis~pg~k~PvsqLdcl~-------rdnyiRSckL~pdg-rtLivGGeastlsiWDLAapTp------------ 499 (705)
T KOG0639|consen 440 GCVKVWDISQPGNKSPVSQLDCLN-------RDNYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTP------------ 499 (705)
T ss_pred CeEEEeeccCCCCCCccccccccC-------cccceeeeEecCCC-ceEEeccccceeeeeeccCCCc------------
Confidence 7899999976432 1222222221 13468899999999 8999999999999999986541
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
.++.......-.+.+++.+||.++.++ +.||.|.|||+.+. ..++.|.+|++. +.|+..
T Consensus 500 -rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----------------~~VrqfqGhtDG--ascIdi- 559 (705)
T KOG0639|consen 500 -RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----------------TLVRQFQGHTDG--ASCIDI- 559 (705)
T ss_pred -chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----------------eeeecccCCCCC--ceeEEe-
Confidence 111111333456788999999996666 58999999999988 688999999988 999998
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCccccee
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMK 240 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 240 (316)
+++|..|.+|+-|.+|+-||+++++.+.... ..+.|.++-.+|++.+++.|-+.+.+.|-.........+..|..-|++
T Consensus 560 s~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLS 638 (705)
T KOG0639|consen 560 SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLS 638 (705)
T ss_pred cCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEE
Confidence 9999999999999999999999988665443 457899999999999999999999999988888777777778777777
Q ss_pred eeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 241 ANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 241 ~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
+. +..-+.++++.+.|..+..|+..-+
T Consensus 639 lK-Fa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 639 LK-FAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred EE-ecccCceeeecCchhhhhhccCccc
Confidence 66 7888999999999999999986554
No 111
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.5e-23 Score=157.32 Aligned_cols=231 Identities=13% Similarity=0.181 Sum_probs=172.8
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeC------cCCcccCCCC--
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDI------RKCHWYSPIS-- 74 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~------~~~~~~~~~~-- 74 (316)
-+-+||.+.+.+|...+. ||.+.|+++.|++.+ .++++++.|++..||.. ..........
T Consensus 170 hTA~iWs~Esg~CL~~Y~-----------GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE 237 (481)
T KOG0300|consen 170 HTARIWSLESGACLATYT-----------GHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE 237 (481)
T ss_pred cceeEEeeccccceeeec-----------ccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch
Confidence 356788888887754443 589999999999998 89999999999999983 2211000000
Q ss_pred ------------------CCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccc
Q 021160 75 ------------------SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPED 135 (316)
Q Consensus 75 ------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~ 135 (316)
.+.+.-.. +..-+.+|...|.+..|...|+.++++ .|.+..+||++++
T Consensus 238 eE~e~sDe~~~d~d~~~~sD~~tiRv-Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg------------ 304 (481)
T KOG0300|consen 238 EEEEHSDEHNRDTDSSEKSDGHTIRV-PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG------------ 304 (481)
T ss_pred hhhhcccccccccccccccCCceeee-eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC------------
Confidence 00000111 112236799999999999999888885 6999999999999
Q ss_pred cccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEeC
Q 021160 136 LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGI 214 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~ 214 (316)
.++..+.||..+ .+.++- +|..+++++.+.|.+.++||++.. ..+..|.+|+..|+++.|.-+. .+++|+.
T Consensus 305 ----e~v~~LtGHd~E--LtHcst-HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD 376 (481)
T KOG0300|consen 305 ----EVVNILTGHDSE--LTHCST-HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD 376 (481)
T ss_pred ----ceeccccCcchh--cccccc-CCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC
Confidence 799999999977 888887 899999999999999999999843 4567889999999999998765 4789999
Q ss_pred CCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 215 EKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 215 d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
|.+|++||++... +.++.. ..++..++ .+.....++.--.+..++++|+...
T Consensus 377 DrTvKvWdLrNMRsplATIRt-dS~~NRva-vs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATIRT-DSPANRVA-VSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred CceEEEeeeccccCcceeeec-CCccceeE-eecCCceEEeccCCceEEEEecCCC
Confidence 9999999999876 555542 22232222 4444445555556688999998754
No 112
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=3.8e-22 Score=160.40 Aligned_cols=229 Identities=12% Similarity=0.154 Sum_probs=174.7
Q ss_pred ceeeEEEEeeCCCcceEEEe-------ccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCC
Q 021160 2 VLFNMLFDLRSDSATRLFYC-------SSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS 74 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~-------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~ 74 (316)
+|+|.-|++.+.+-...+.- +..+......+|...+.+++.++++ +|||+|+.|..|.||+.++.+
T Consensus 163 ~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t~e------ 235 (479)
T KOG0299|consen 163 DGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDTLE------ 235 (479)
T ss_pred CcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC-cEEEecCCCceEEEecCcccc------
Confidence 47788899877664311111 1111111114799999999999999 999999999999999999886
Q ss_pred CCCCceecccccccCCCcccEEEEEEccCCC-eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCce
Q 021160 75 SDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153 (316)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (316)
+++. ..+|.+.|.+++|-.... +++++.|..|++|+++.. ..+.++.+|...
T Consensus 236 ---hv~~------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~----------------s~vetlyGHqd~-- 288 (479)
T KOG0299|consen 236 ---HVKV------FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL----------------SYVETLYGHQDG-- 288 (479)
T ss_pred ---hhhc------ccccccceeeeeeecCccceeeeecCCceEEEehhHh----------------HHHHHHhCCccc--
Confidence 2222 289999999999987665 445578999999999887 678889999977
Q ss_pred eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCC
Q 021160 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP 232 (316)
Q Consensus 154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~ 232 (316)
|.++.. ..-++.+.+|+.|+++++|++. .+....+.+|.+.+.|++|-.+ ..|++||.+|.|.+|++..++ +.+..
T Consensus 289 v~~Ida-L~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 289 VLGIDA-LSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred eeeech-hcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEee
Confidence 999987 5667777778899999999995 3434567788889999999754 578999999999999998766 22111
Q ss_pred -CC-----------cccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 233 -DN-----------AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 233 -~~-----------~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
.| ..++..++ ..+...++++++.+|.+++|.+..+
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla-~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLA-VIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccccccCCccccccccceeeeE-ecccCceEEecCCCCceEEEEecCC
Confidence 11 11344444 5567889999999999999999887
No 113
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.5e-22 Score=170.17 Aligned_cols=210 Identities=17% Similarity=0.255 Sum_probs=164.8
Q ss_pred CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
|++.+.+|.+.+..+...+ +||+..|.+++...++ . +++|+.|.++++|......
T Consensus 79 ~D~~i~v~~~~~~~P~~~L-----------kgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l~------------ 133 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAEPLYTL-----------KGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGELV------------ 133 (745)
T ss_pred ccceEEEEecCCCCchhhh-----------hccccceeeeecCCcC-c-eEecccccceEEecchhhh------------
Confidence 4566677776655543333 4689999999998877 4 9999999999999876332
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
.. ..+|...|++++.-|++.++.++.|++|++|.-. +.+++|.+|.+. |..+++
T Consensus 134 ----~~-l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~------------------~~l~tf~gHtD~--VRgL~v- 187 (745)
T KOG0301|consen 134 ----YS-LQGHTASVWAVASLPENTYVTGSADKTIKLWKGG------------------TLLKTFSGHTDC--VRGLAV- 187 (745)
T ss_pred ----cc-cCCcchheeeeeecCCCcEEeccCcceeeeccCC------------------chhhhhccchhh--eeeeEE-
Confidence 12 3899999999999999977666789999999863 578999999976 999998
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM 239 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~ 239 (316)
-+ ...+++++.||.|++|++ +|+++.++.+|+.-|.++...+++..++++++|++++||+...-. ..+++ ...+.
T Consensus 188 l~-~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lP--ttsiW 263 (745)
T KOG0301|consen 188 LD-DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLP--TTSIW 263 (745)
T ss_pred ec-CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecC--ccceE
Confidence 44 445789999999999999 699999999999999999988888899999999999999987221 23333 22332
Q ss_pred eeeecCCCCceeEEecCCCeEEEEEecc
Q 021160 240 KANKQGREDHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 240 ~~~~~~~~~~~~~s~~~d~~~~~w~~~~ 267 (316)
....+ .+.-++++++||.+++|....
T Consensus 264 sa~~L--~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 264 SAKVL--LNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEEEe--eCCCEEEeccCceEEEEEecc
Confidence 22222 234688999999999998763
No 114
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=9.2e-22 Score=150.38 Aligned_cols=230 Identities=14% Similarity=0.147 Sum_probs=163.8
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCC-cccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ec
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN 111 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~ 111 (316)
...|.+++|+|....++++|+.|++||+|++... . ........|.+++.+++|+.+|..+++ +.
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~--------------~~~ka~~~~~~PvL~v~WsddgskVf~g~~ 92 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ--------------LVPKAQQSHDGPVLDVCWSDDGSKVFSGGC 92 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCc--------------ccchhhhccCCCeEEEEEccCCceEEeecc
Confidence 5789999999965477889999999999999863 3 122333678999999999999986666 57
Q ss_pred CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC-CcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160 112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLM 190 (316)
Q Consensus 112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~~wd~~~~~~~~~~ 190 (316)
|+++++||+.++ .+..+..|..+ |..+.|..+- -..|++||.|++|++||.+...++.++
T Consensus 93 Dk~~k~wDL~S~-----------------Q~~~v~~Hd~p--vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~ 153 (347)
T KOG0647|consen 93 DKQAKLWDLASG-----------------QVSQVAAHDAP--VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL 153 (347)
T ss_pred CCceEEEEccCC-----------------Ceeeeeecccc--eeEEEEecCCCcceeEecccccceeecccCCCCeeeee
Confidence 999999999987 56778888876 9999984322 348999999999999999876654422
Q ss_pred ec-------------------------------------C----ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC--C
Q 021160 191 VG-------------------------------------D----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT--D 227 (316)
Q Consensus 191 ~~-------------------------------------~----~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~--~ 227 (316)
.. + +-.+.+++..++....|.|+.+|.+-|..+... +
T Consensus 154 ~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~ 233 (347)
T KOG0647|consen 154 QLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK 233 (347)
T ss_pred eccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc
Confidence 11 1 124678888888877888888998888877653 1
Q ss_pred -CCCCCCCc------ccceeee--ecCCCCceeEEecCCCeEEEEEecccCcceeEEeecccccccccCCCCeEEEEe
Q 021160 228 -FPPLPDNA------EKIMKAN--KQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLG 296 (316)
Q Consensus 228 -~~~~~~~~------~~~~~~~--~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 296 (316)
-.+++-|. ..|+..+ .+.+.-..+++.+.||++.+||-..+.++.-.+.-+..-..-.-..+|.+|++.
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 22222121 1244332 355666789999999999999987766554433333333333345666676664
No 115
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=4.4e-22 Score=152.12 Aligned_cols=220 Identities=13% Similarity=0.123 Sum_probs=157.3
Q ss_pred ceeeEEEEeeCC-CcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 2 VLFNMLFDLRSD-SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 2 ~g~v~vwd~~~~-~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
+|+||+|++... ...+.. .. .|.++|.+++|+.+| ..+++|+.|+.+++||+.+++..
T Consensus 49 D~tVR~wevq~~g~~~~ka----~~------~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S~Q~~---------- 107 (347)
T KOG0647|consen 49 DGTVRIWEVQNSGQLVPKA----QQ------SHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLASGQVS---------- 107 (347)
T ss_pred CCceEEEEEecCCcccchh----hh------ccCCCeEEEEEccCC-ceEEeeccCCceEEEEccCCCee----------
Confidence 689999999874 332211 11 278999999999999 89999999999999999998632
Q ss_pred ecccccccCCCcccEEEEEEccCCC--eEEEe-cCCcEEEEEcCCCCCCCCccCC-----------------------cc
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSE--LLISY-NDELVYLFEKNMGLGPSPLSLS-----------------------PE 134 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~-----------------------~~ 134 (316)
.+ ..|.++|.++.|-+... .|++| -|++|+.||.+....-....++ .+
T Consensus 108 -----~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 108 -----QV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVY 181 (347)
T ss_pred -----ee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEE
Confidence 22 67999999999988765 78886 5999999999865311111111 11
Q ss_pred ccccCCCcceeeCCcCC--ceeeeEEEecCCCcEEEEeccCCeEEEEeccCC--eeEEEeecCcc---------ceEEEE
Q 021160 135 DLQKREEPQVYSGHRNS--QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--KLVRLMVGDRH---------VVNQLE 201 (316)
Q Consensus 135 ~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~--~~~~~~~~~~~---------~v~~~~ 201 (316)
.+... ...++.+..+ --+.|++. -++.+..+.|+-+|.+.+..+..+ +.-.+|+.|.. .|++++
T Consensus 182 nL~n~--~te~k~~~SpLk~Q~R~va~-f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 182 NLENP--PTEFKRIESPLKWQTRCVAC-FQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EcCCC--cchhhhhcCcccceeeEEEE-EecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 11110 1111111111 11678887 567777799999999999998876 44456666652 578899
Q ss_pred EcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeE
Q 021160 202 PHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRI 252 (316)
Q Consensus 202 ~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (316)
|+|.-..|+|++.||++.+||-.... +.+...+..++.... +..+|.+++
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~-fn~~G~ifa 309 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCS-FNRNGSIFA 309 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeE-ecCCCCEEE
Confidence 99988899999999999999987765 777777888775554 666666554
No 116
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=3.2e-22 Score=153.61 Aligned_cols=223 Identities=16% Similarity=0.220 Sum_probs=174.3
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+++|++||......++-+..... ..+|.+++|+|.| .++++|...-.+++||+++.++.
T Consensus 193 D~tvKlFDfsK~saKrA~K~~qd---------~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcf----------- 251 (430)
T KOG0640|consen 193 DNTVKLFDFSKTSAKRAFKVFQD---------TEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCF----------- 251 (430)
T ss_pred CCeEEEEecccHHHHHHHHHhhc---------cceeeeEeecCCC-ceEEEecCCCceeEEeccceeEe-----------
Confidence 57899999876554443332211 3489999999999 89999999999999999998853
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
........|.+.|+++.+++.+++.+++ .||.|++||--.. +++.++....++..|.+..|
T Consensus 252 -vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~----------------rCv~t~~~AH~gsevcSa~F- 313 (430)
T KOG0640|consen 252 -VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN----------------RCVRTIGNAHGGSEVCSAVF- 313 (430)
T ss_pred -eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccH----------------HHHHHHHhhcCCceeeeEEE-
Confidence 2222336789999999999999988885 6999999997776 67777765545466999999
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecC-----ccceEEEEEcCCCCeEEEEe-CCCcEEEecCCCCCCCCC--C
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-----RHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFPPL--P 232 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~l~s~~-~d~~i~iwd~~~~~~~~~--~ 232 (316)
..+++++++.+.|..+++|.+.+++++..+.+- ..--+...|+....+++.-. ..+.++-||.++.....+ .
T Consensus 314 tkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl 393 (430)
T KOG0640|consen 314 TKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL 393 (430)
T ss_pred ccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc
Confidence 999999999999999999999999999888653 11234466887777765543 457899999998873222 2
Q ss_pred CCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160 233 DNAEKIMKANKQGREDHSRITLTPDVIMHVLR 264 (316)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~ 264 (316)
+|...+..+. .+|....+++++.|...|+|-
T Consensus 394 gHn~a~R~i~-HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 394 GHNGAVRWIV-HSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCCCCceEEE-eCCCCCceeeecccceeeeee
Confidence 5777765555 788888999999999999995
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-20 Score=163.83 Aligned_cols=233 Identities=14% Similarity=0.172 Sum_probs=187.5
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 111 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 111 (316)
.|..+.+.++|.|+| ..|++++.||.|++|+...... .+..+ ..+...|.+++.... .+++++.
T Consensus 11 aht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e-------------~P~ti-~~~g~~v~~ia~~s~-~f~~~s~ 74 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEE-------------EPETI-DISGELVSSIACYSN-HFLTGSE 74 (933)
T ss_pred hccCceEEEEEcCCC-CEEEEecCCCceEEeecCCccc-------------CCchh-hccCceeEEEeeccc-ceEEeec
Confidence 488899999999999 7999999999999999876520 22222 336677777765433 4555568
Q ss_pred CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160 112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 191 (316)
Q Consensus 112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~ 191 (316)
+++|.+|....+ ..-..+...+-+ +.+++| +.+|.+++.|++|-.|++.++.+......+.
T Consensus 75 ~~tv~~y~fps~----------------~~~~iL~Rftlp--~r~~~v-~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr 135 (933)
T KOG1274|consen 75 QNTVLRYKFPSG----------------EEDTILARFTLP--IRDLAV-SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR 135 (933)
T ss_pred cceEEEeeCCCC----------------Cccceeeeeecc--ceEEEE-ecCCcEEEeecCceeEEEEeccccchheeec
Confidence 999999999887 333344444444 899999 8999999999999999999999999999999
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCC------Cc-ccceeeeecCCCCceeEEecCCCeEEEE
Q 021160 192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD------NA-EKIMKANKQGREDHSRITLTPDVIMHVL 263 (316)
Q Consensus 192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~------~~-~~~~~~~~~~~~~~~~~s~~~d~~~~~w 263 (316)
+|.++|.++.|+|++++||+.+.||.|++|++..+. ..++.+ .. ..++....|+|++..++..+.|+.|+++
T Consensus 136 gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy 215 (933)
T KOG1274|consen 136 GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVY 215 (933)
T ss_pred ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEE
Confidence 999999999999999999999999999999999876 333332 11 4566667799998888888999999999
Q ss_pred EecccC------------cceeEEeecccccccccCCCCeEEEEeccC
Q 021160 264 RLQRRQ------------TLAYRERRYNAADFESDEEEGETYLLGFSD 299 (316)
Q Consensus 264 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 299 (316)
+..... ...+..++|.+.+++.+.-+|.|.+|+...
T Consensus 216 ~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 216 SRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 866431 123348999999999999999999999975
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=8.1e-22 Score=158.79 Aligned_cols=203 Identities=14% Similarity=0.193 Sum_probs=155.6
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.|.+++|.+.++....++.. |-..|+++.|+-++ .+|++|+.||.|.+|.+-.---...-....
T Consensus 102 ~g~lYlWelssG~LL~v~~a-----------HYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~~---- 165 (476)
T KOG0646|consen 102 SGNLYLWELSSGILLNVLSA-----------HYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSVK---- 165 (476)
T ss_pred cCcEEEEEeccccHHHHHHh-----------hccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCcc----
Confidence 57899999999987655533 67789999999999 899999999999999985321000000122
Q ss_pred cccccccCCCcccEEEEEEccCCC--eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSE--LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN 158 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~--~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 158 (316)
+......|.-+|+.+...+.|. .+++ +.|.++++||+..+ ..+..+.-. ..+.+++
T Consensus 166 --p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g----------------~LLlti~fp---~si~av~ 224 (476)
T KOG0646|consen 166 --PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG----------------VLLLTITFP---SSIKAVA 224 (476)
T ss_pred --ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc----------------eeeEEEecC---CcceeEE
Confidence 3333388999999999987653 6666 67999999999888 565555533 2389999
Q ss_pred EecCCCcEEEEeccCCeEEEEeccCC----------------eeEEEeecCcc--ceEEEEEcCCCCeEEEEeCCCcEEE
Q 021160 159 FFGPNDEYVMSGSDCGHLFIWKKKGG----------------KLVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKL 220 (316)
Q Consensus 159 ~~~~~~~~l~~~~~dg~v~~wd~~~~----------------~~~~~~~~~~~--~v~~~~~~p~~~~l~s~~~d~~i~i 220 (316)
. +|.+..+++|+.+|.|.+.++... ..+..+.+|++ .|+|++++-|+..|++|+.||+|+|
T Consensus 225 l-Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv 303 (476)
T KOG0646|consen 225 L-DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCV 303 (476)
T ss_pred E-cccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEE
Confidence 8 999999999999999998886432 23556778887 9999999999999999999999999
Q ss_pred ecCCCCC-CCCCCCCcccceeee
Q 021160 221 WAPMPTD-FPPLPDNAEKIMKAN 242 (316)
Q Consensus 221 wd~~~~~-~~~~~~~~~~~~~~~ 242 (316)
||+.+.+ ++++.....++..+.
T Consensus 304 Wdi~S~Q~iRtl~~~kgpVtnL~ 326 (476)
T KOG0646|consen 304 WDIYSKQCIRTLQTSKGPVTNLQ 326 (476)
T ss_pred EecchHHHHHHHhhhccccceeE
Confidence 9999877 555543344444443
No 119
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6e-21 Score=160.30 Aligned_cols=229 Identities=12% Similarity=0.167 Sum_probs=170.1
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 113 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 113 (316)
+.+|.++||+.+. +.||.+-.+|.|.+|++...- ++...+..+....|.+++|++.++++.++.+|
T Consensus 25 Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~w-------------~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg 90 (691)
T KOG2048|consen 25 PSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNNW-------------FLEPVIHGPEDRSIESLAWAEGGRLFSSGLSG 90 (691)
T ss_pred ccceEEEEEeccC-CceeeeccCCcEEEEccCCCc-------------eeeEEEecCCCCceeeEEEccCCeEEeecCCc
Confidence 6789999999988 889999999999999998653 24445545557789999999777777778999
Q ss_pred cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE--Eee
Q 021160 114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--LMV 191 (316)
Q Consensus 114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~--~~~ 191 (316)
.|.-||+.+. ++...+...... |++++. +|.+..++.|++||.+++++...++... .+.
T Consensus 91 ~i~EwDl~~l----------------k~~~~~d~~gg~--IWsiai-~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~ 151 (691)
T KOG2048|consen 91 SITEWDLHTL----------------KQKYNIDSNGGA--IWSIAI-NPENTILAIGCDDGVLYDFSIGPDKITYKRSLM 151 (691)
T ss_pred eEEEEecccC----------------ceeEEecCCCcc--eeEEEe-CCccceEEeecCCceEEEEecCCceEEEEeecc
Confidence 9999999887 666666665544 999999 8999999999999988888888777653 344
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CC--C--CCCCcc----cceeeeecCCCCceeEEecCCCeEEE
Q 021160 192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FP--P--LPDNAE----KIMKANKQGREDHSRITLTPDVIMHV 262 (316)
Q Consensus 192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~--~--~~~~~~----~~~~~~~~~~~~~~~~s~~~d~~~~~ 262 (316)
..+++|.+++|+|++..+++|+.||.|++||...+. ++ + +..-.. -+..+... ....++++.+.|.|++
T Consensus 152 rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~F 229 (691)
T KOG2048|consen 152 RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTF 229 (691)
T ss_pred cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEE
Confidence 456899999999999999999999999999998876 22 1 111111 12222211 4568999999999999
Q ss_pred EEecccCcceeE-EeecccccccccCCCCeEEEEec
Q 021160 263 LRLQRRQTLAYR-ERRYNAADFESDEEEGETYLLGF 297 (316)
Q Consensus 263 w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~ 297 (316)
||...+.+..-. .+..+...++..+++.+++..+.
T Consensus 230 Wd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGv 265 (691)
T KOG2048|consen 230 WDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGV 265 (691)
T ss_pred EcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccC
Confidence 998876443222 33334444444444444444433
No 120
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=3.7e-20 Score=158.98 Aligned_cols=283 Identities=12% Similarity=0.136 Sum_probs=185.4
Q ss_pred CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCC--C---
Q 021160 1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS--S--- 75 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~--~--- 75 (316)
+.|.|.+++++..+....|... .++|++++|..+|+..+++|+..|.+.+||++..++..... +
T Consensus 222 ~~G~ViifNlK~dkil~sFk~d-----------~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~s 290 (910)
T KOG1539|consen 222 ENGTVIIFNLKFDKILMSFKQD-----------WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGS 290 (910)
T ss_pred cCceEEEEEcccCcEEEEEEcc-----------ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCC
Confidence 4799999999988875555431 37899999999998889999999999999999887443221 0
Q ss_pred --------CCCce----------ecccc---------cccCCCcccEEEEEEc-cCCCeEEE-ecCCcEEEEEcCCCC--
Q 021160 76 --------DTPVD----------TFCPR---------HLIGKNNIHITGLAYS-NTSELLIS-YNDELVYLFEKNMGL-- 124 (316)
Q Consensus 76 --------~~~~~----------~~~~~---------~~~~~~~~~i~~~~~~-~~~~~l~s-~~d~~i~iwd~~~~~-- 124 (316)
.+|+- .+... ....+|..+..+++|. .+|.++.+ +.|++++.+++....
T Consensus 291 v~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~ 370 (910)
T KOG1539|consen 291 VTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQS 370 (910)
T ss_pred cccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHh
Confidence 00100 00000 0112344444444444 23333333 234444444432111
Q ss_pred ---CC---------------------CCccCCc-----------------------cccccCCCcceeeCCc----CCce
Q 021160 125 ---GP---------------------SPLSLSP-----------------------EDLQKREEPQVYSGHR----NSQT 153 (316)
Q Consensus 125 ---~~---------------------~~~~~~~-----------------------~~~~~~~~~~~~~~~~----~~~~ 153 (316)
+. ....+.. |+......-+....+. ....
T Consensus 371 ~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~ 450 (910)
T KOG1539|consen 371 QELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDIN 450 (910)
T ss_pred HhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcc
Confidence 00 0000000 0011111100011111 1123
Q ss_pred eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC---
Q 021160 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--- 227 (316)
Q Consensus 154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~---~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--- 227 (316)
+++++. ++.|++.+.|...|.|-+|++++|-....+ +.|.++|+.++....++.+++++.+|.+++||...+.
T Consensus 451 ~~av~v-s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~ 529 (910)
T KOG1539|consen 451 ATAVCV-SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK 529 (910)
T ss_pred eEEEEE-eccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee
Confidence 788888 899999999999999999999999888888 5899999999999888999999999999999976432
Q ss_pred ---------------------------------------CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 228 ---------------------------------------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 228 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
.+.+.+|.+.+.... +++|++++++.+.|++|++||+.++
T Consensus 530 ~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~-FS~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 530 SLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT-FSPDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred eeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE-eCCCCcEEEEeecCCcEEEEeccCc
Confidence 223447888886666 9999999999999999999999987
Q ss_pred Ccce---------eEEeeccccccccc-CCCCeEEEEe
Q 021160 269 QTLA---------YRERRYNAADFESD-EEEGETYLLG 296 (316)
Q Consensus 269 ~~~~---------~~~~~~~~~~~~~~-~~~~~v~~~~ 296 (316)
...- ...++|.+..++.. .+..-||.|-
T Consensus 609 ~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 609 TLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 4432 23688888888854 4444577763
No 121
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=6e-22 Score=153.05 Aligned_cols=236 Identities=15% Similarity=0.159 Sum_probs=168.9
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.|.|+|.|+.+.++.+-+.. |...|+.+.|+|..++++++++.|..|++|++++..++
T Consensus 114 ~GvIrVid~~~~~~~~~~~g-----------hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv----------- 171 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYRG-----------HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV----------- 171 (385)
T ss_pred eeEEEEEecchhhhccceec-----------cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE-----------
Confidence 58899999988877666654 78899999999999999999999999999999998754
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCc----cc----cccCC-Ccc---eeeCC
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSP----ED----LQKRE-EPQ---VYSGH 148 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~----~~----~~~~~-~~~---~~~~~ 148 (316)
+...-..+|.+.|.++.|+++|.++++ |.|.++++|++....-........ .. +++.+ ... +-.-|
T Consensus 172 -~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH 250 (385)
T KOG1034|consen 172 -AVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH 250 (385)
T ss_pred -EEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence 333444789999999999999999998 579999999998543111111110 00 11100 011 22345
Q ss_pred cCCceeeeEEEecCCCcEEEEeccCCeEEEEec-cCCee-------------EEEeecCccceEEE--EEcCCCCeEEEE
Q 021160 149 RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK-KGGKL-------------VRLMVGDRHVVNQL--EPHPHIPMFATC 212 (316)
Q Consensus 149 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~-~~~~~-------------~~~~~~~~~~v~~~--~~~p~~~~l~s~ 212 (316)
.+. |-|+.|+ |+++++-+.++.|..|.. +-++. +..+.-....|+-+ +|.|-+++||.|
T Consensus 251 rny--VDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g 325 (385)
T KOG1034|consen 251 RNY--VDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG 325 (385)
T ss_pred cch--HHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence 544 8888884 789999999999999987 22221 22333334455555 556778889999
Q ss_pred eCCCcEEEecCCCCCCCCCCC--C--cccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160 213 GIEKTVKLWAPMPTDFPPLPD--N--AEKIMKANKQGREDHSRITLTPDVIMHVLRL 265 (316)
Q Consensus 213 ~~d~~i~iwd~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~ 265 (316)
...|+|.+||++......... | ....+.-..++.++..++....|++|.-||.
T Consensus 326 nq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 326 NQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 999999999998776322222 1 1223344447889999999999999998874
No 122
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.9e-21 Score=149.54 Aligned_cols=198 Identities=12% Similarity=0.199 Sum_probs=147.9
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCC-CcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
+-+|+|||++.......+.. |.+.|+++.|.+.- .+.|++|+.||.|.+|+.....
T Consensus 62 DetI~IYDm~k~~qlg~ll~-----------HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~------------ 118 (362)
T KOG0294|consen 62 DETIHIYDMRKRKQLGILLS-----------HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE------------ 118 (362)
T ss_pred CCcEEEEeccchhhhcceec-----------cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE------------
Confidence 34789999988776666554 78899999998854 1389999999999999998765
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccc-----cccCC--------Ccce--
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPED-----LQKRE--------EPQV-- 144 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~--------~~~~-- 144 (316)
+...+ .+|...|+.++.+|.+++..+ +.|+.+++||+-.+....-..+.... .+.+. .+..
T Consensus 119 --~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q 195 (362)
T KOG0294|consen 119 --LLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQ 195 (362)
T ss_pred --Eeeee-cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEe
Confidence 44444 889999999999999997777 78999999999877532221111110 01100 0000
Q ss_pred ------eeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEE--cCCCCeEEEEeCCC
Q 021160 145 ------YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP--HPHIPMFATCGIEK 216 (316)
Q Consensus 145 ------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~s~~~d~ 216 (316)
+..-..+..+.++.| -++..+++|.+++.|.+||..+..+...+.+|..+|.++.+ .|.+.+|+|+|.||
T Consensus 196 ~d~A~v~~~i~~~~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 196 LDNASVFREIENPKRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred cccHhHhhhhhccccceeeee--cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence 111111223566665 46889999999999999999999999999999999999985 45677899999999
Q ss_pred cEEEecCCCCC
Q 021160 217 TVKLWAPMPTD 227 (316)
Q Consensus 217 ~i~iwd~~~~~ 227 (316)
.|+|||++...
T Consensus 274 ~I~vWd~~~~~ 284 (362)
T KOG0294|consen 274 FIKVWDIDMET 284 (362)
T ss_pred eEEEEEccccc
Confidence 99999998764
No 123
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=9.6e-21 Score=145.24 Aligned_cols=223 Identities=19% Similarity=0.181 Sum_probs=157.9
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+|.++++|.........+. |..++.+++|.+. ..+++|+.||.|+.+|+.++..
T Consensus 34 DgslrlYdv~~~~l~~~~~------------~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~------------ 87 (323)
T KOG1036|consen 34 DGSLRLYDVPANSLKLKFK------------HGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNE------------ 87 (323)
T ss_pred cCcEEEEeccchhhhhhee------------cCCceeeeeccCC--ceEEEeccCceEEEEEecCCcc------------
Confidence 6889999988775433333 6789999999984 5899999999999999998752
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCC-----------------------CCCccCCccccc
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLG-----------------------PSPLSLSPEDLQ 137 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~-----------------------~~~~~~~~~~~~ 137 (316)
.. +..|..+|.|+.+++....+++ +.|++|++||.+.... .....+..+++.
T Consensus 88 ---~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 88 ---DQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred ---ee-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcc
Confidence 12 2789999999999986655555 6799999999985321 111112223333
Q ss_pred cCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC----eeEEEeecCcc---------ceEEEEEcC
Q 021160 138 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG----KLVRLMVGDRH---------VVNQLEPHP 204 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~----~~~~~~~~~~~---------~v~~~~~~p 204 (316)
+...........-+-.+.++++ -|++.=.++++-+|.|.+=.+... +....|+.|.. +|++++|||
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~-~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVAL-VPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred cccchhhhccccceeEEEEEEE-ecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 3322211111111112788988 567777888999999987776654 33445666642 799999999
Q ss_pred CCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecC
Q 021160 205 HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTP 256 (316)
Q Consensus 205 ~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 256 (316)
-...||||+.||.|.+||+...+ +..+......|..++ ++.++..++.++.
T Consensus 243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sls-fs~dG~~LAia~s 294 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLS-FSMDGSLLAIASS 294 (323)
T ss_pred ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEE-eccCCCeEEEEec
Confidence 98889999999999999999887 777776656665555 6677777666543
No 124
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=4.6e-21 Score=150.70 Aligned_cols=215 Identities=20% Similarity=0.220 Sum_probs=163.3
Q ss_pred CCCccceEEEEECCCCC-cEEEEEecCCcEEEEeCcCCc-ccCCC------CCCCCceecccccccCCCcccEEEEEEcc
Q 021160 31 PMNSIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCH-WYSPI------SSDTPVDTFCPRHLIGKNNIHITGLAYSN 102 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~-~~l~~g~~dg~v~~wd~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (316)
.+|.+.++.+.-.+.+. .+.++=+..|.|+||++...- ..... ...+|+.++ .+|...=..+.|||
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~------~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF------NGHKGEGYGLDWSP 221 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe------cccCccceeeeccc
Confidence 46888999888888752 344555788999999986321 11111 122333333 78888889999999
Q ss_pred CCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC-CCcEEEEeccCCeEEEE
Q 021160 103 TSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIW 179 (316)
Q Consensus 103 ~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~~w 179 (316)
--. .|++| .-+.|++|...++. |.+ -...|.+|... |..++| +| ....|++|+.||+|+||
T Consensus 222 ~~~g~LlsGDc~~~I~lw~~~~g~---------W~v----d~~Pf~gH~~S--VEDLqW-SptE~~vfaScS~DgsIrIW 285 (440)
T KOG0302|consen 222 IKTGRLLSGDCVKGIHLWEPSTGS---------WKV----DQRPFTGHTKS--VEDLQW-SPTEDGVFASCSCDGSIRIW 285 (440)
T ss_pred ccccccccCccccceEeeeeccCc---------eee----cCccccccccc--hhhhcc-CCccCceEEeeecCceEEEE
Confidence 433 45665 47889999987762 111 12346678865 999999 55 46688999999999999
Q ss_pred eccCC---eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC----CCCCCCCcccceeeeecCCCCceeE
Q 021160 180 KKKGG---KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDHSRI 252 (316)
Q Consensus 180 d~~~~---~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (316)
|++.+ .++. .+.|.+.|+-+.|+.+..+||+|+.||+++|||++.-+ +.++..|..+|.++.|.+.+...++
T Consensus 286 DiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~ia 364 (440)
T KOG0302|consen 286 DIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIA 364 (440)
T ss_pred EecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEE
Confidence 99987 3333 37899999999999998999999999999999998765 4477889999988886666888999
Q ss_pred EecCCCeEEEEEeccc
Q 021160 253 TLTPDVIMHVLRLQRR 268 (316)
Q Consensus 253 s~~~d~~~~~w~~~~~ 268 (316)
+++.|..+.+||+.-.
T Consensus 365 asg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 365 ASGEDNQITIWDLSVE 380 (440)
T ss_pred eccCCCcEEEEEeecc
Confidence 9999999999998643
No 125
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=1.6e-20 Score=148.58 Aligned_cols=210 Identities=15% Similarity=0.169 Sum_probs=161.7
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 109 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 109 (316)
.||+++|..++|+|.+.+.||+|+.|.+|.||.+..+.+.... .+|+..+ .+|...|--++|+|... +|++
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l--tepvv~L------~gH~rrVg~V~wHPtA~NVLls 149 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL--TEPVVEL------YGHQRRVGLVQWHPTAPNVLLS 149 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc--ccceEEE------eecceeEEEEeecccchhhHhh
Confidence 6999999999999988799999999999999999877643321 2333333 89999999999999874 6666
Q ss_pred -ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE
Q 021160 110 -YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 188 (316)
Q Consensus 110 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~ 188 (316)
+.|.+|.+||+.++ ..+-.+. |.+. |.+++| +.+|.++++.+.|..|++||.++++.+.
T Consensus 150 ag~Dn~v~iWnv~tg----------------eali~l~-hpd~--i~S~sf-n~dGs~l~TtckDKkvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTG----------------EALITLD-HPDM--VYSMSF-NRDGSLLCTTCKDKKVRVIDPRRGTVVS 209 (472)
T ss_pred ccCCceEEEEeccCC----------------ceeeecC-CCCe--EEEEEe-ccCCceeeeecccceeEEEcCCCCcEee
Confidence 68999999999998 5555555 8766 999999 9999999999999999999999999999
Q ss_pred EeecCcc-ceEEEEEcCCCCeEEEEe---CCCcEEEecCCCCC----CCCCCCCcccceeeeecCCCCc-eeEEecCCCe
Q 021160 189 LMVGDRH-VVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDH-SRITLTPDVI 259 (316)
Q Consensus 189 ~~~~~~~-~v~~~~~~p~~~~l~s~~---~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~ 259 (316)
.-.+|.+ ....+.|-.++.++.||- .+..+-+||...-. +.++.. ...++-- .+.++.. ..+.|-.|+.
T Consensus 210 e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~P-FyD~dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 210 EGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLP-FYDPDTSIVYLCGKGDSS 287 (472)
T ss_pred ecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEe-eecCCCCEEEEEecCCcc
Confidence 8888875 345567888888554442 46789999987654 333332 2333222 2455444 4577888999
Q ss_pred EEEEEecccCc
Q 021160 260 MHVLRLQRRQT 270 (316)
Q Consensus 260 ~~~w~~~~~~~ 270 (316)
||.+.+.....
T Consensus 288 IRYyEit~d~P 298 (472)
T KOG0303|consen 288 IRYFEITNEPP 298 (472)
T ss_pred eEEEEecCCCc
Confidence 99999887643
No 126
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=3e-20 Score=141.86 Aligned_cols=260 Identities=17% Similarity=0.247 Sum_probs=171.6
Q ss_pred ceeeEEEEeeCCCc--ceEEEecccc--ccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCC
Q 021160 2 VLFNMLFDLRSDSA--TRLFYCSSFS--ENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT 77 (316)
Q Consensus 2 ~g~v~vwd~~~~~~--~~~~~~~~~~--~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~ 77 (316)
+|.+-|||+..... ..-+.++..- .....-+|+..|.++-|-|.+.-.|.+++.|.++++||..+.+..
T Consensus 65 dgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a------- 137 (397)
T KOG4283|consen 65 DGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEA------- 137 (397)
T ss_pred CccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceee-------
Confidence 68899999986541 1111111111 111124799999999999977679999999999999999987621
Q ss_pred CceecccccccCCCcccEEEEEEccCC---CeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCce
Q 021160 78 PVDTFCPRHLIGKNNIHITGLAYSNTS---ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (316)
..| ...+.|.+-+++|-. .+++++ .|-+|++.|+..+ ...+.+.||...
T Consensus 138 --~~F-------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----------------s~sH~LsGHr~~-- 190 (397)
T KOG4283|consen 138 --VDF-------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----------------SFSHTLSGHRDG-- 190 (397)
T ss_pred --EEe-------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC----------------cceeeeccccCc--
Confidence 111 124567777788754 266666 6889999999999 788999999987
Q ss_pred eeeEEEecCCCcE-EEEeccCCeEEEEeccCC-eeEEE--------------eecCccceEEEEEcCCCCeEEEEeCCCc
Q 021160 154 VKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGG-KLVRL--------------MVGDRHVVNQLEPHPHIPMFATCGIEKT 217 (316)
Q Consensus 154 i~~~~~~~~~~~~-l~~~~~dg~v~~wd~~~~-~~~~~--------------~~~~~~~v~~~~~~p~~~~l~s~~~d~~ 217 (316)
|.++.| +|...+ |++|+.||.|++||++.. .+... -..|.+.|+.++|+.++.++++++.|..
T Consensus 191 vlaV~W-sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 191 VLAVEW-SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred eEEEEe-ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence 999999 776654 688999999999998753 22222 2357789999999999999999999999
Q ss_pred EEEecCCCCC--CCCCCC--Ccccc-eeeeecCCC-----------CceeEEecCCCeEEEEEecccCcceeEEeecccc
Q 021160 218 VKLWAPMPTD--FPPLPD--NAEKI-MKANKQGRE-----------DHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAA 281 (316)
Q Consensus 218 i~iwd~~~~~--~~~~~~--~~~~~-~~~~~~~~~-----------~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~ 281 (316)
+++|+...+. +..+.. |.... ........+ +-.+++......|++|+.. .+......+.++-.
T Consensus 270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h-~k~i~c~~~~~~fq 348 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH-LKRINCAAYRPDFE 348 (397)
T ss_pred eEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecc-cceeeEEeecCchh
Confidence 9999987764 222110 11000 000001122 2234444455556666544 22222224555555
Q ss_pred cccccCCCCeEEEEec
Q 021160 282 DFESDEEEGETYLLGF 297 (316)
Q Consensus 282 ~~~~~~~~~~v~~~~~ 297 (316)
..-+++-++.++.|-.
T Consensus 349 ~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 349 QCFTGDMNGNIYMWSP 364 (397)
T ss_pred hhhccccCCccccccc
Confidence 6666666666666643
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.9e-20 Score=162.39 Aligned_cols=219 Identities=17% Similarity=0.207 Sum_probs=173.9
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+|.|++|+.......+..... |...|.+++... ++|++|+.+++|.+|.+..++
T Consensus 34 dg~ir~~~~~sd~e~P~ti~~----------~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~------------- 87 (933)
T KOG1274|consen 34 DGDIRKWKTNSDEEEPETIDI----------SGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGE------------- 87 (933)
T ss_pred CCceEEeecCCcccCCchhhc----------cCceeEEEeecc---cceEEeeccceEEEeeCCCCC-------------
Confidence 578999988766322222221 345677776653 589999999999999999875
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
...++...+-++.+++|+.+|++++.+ .|-.|++.++... ...+.+.+|..+ |.++.|
T Consensus 88 --~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~----------------s~~~~lrgh~ap--Vl~l~~- 146 (933)
T KOG1274|consen 88 --EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS----------------SQEKVLRGHDAP--VLQLSY- 146 (933)
T ss_pred --ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc----------------chheeecccCCc--eeeeeE-
Confidence 222224446789999999999988885 6888999999887 677889999977 999999
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecC--------ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCC
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD--------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPL 231 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~--------~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~ 231 (316)
+|.+.+||+.+.||.|++|+++++.+..++.+- ...+..++|+|++..|+..+.|+.|++|+..+.. ...+
T Consensus 147 ~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L 226 (933)
T KOG1274|consen 147 DPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL 226 (933)
T ss_pred cCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee
Confidence 999999999999999999999998877666431 3456779999998888888899999999998876 3334
Q ss_pred CC-CcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160 232 PD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 232 ~~-~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~ 267 (316)
.. +....+....|+|.|.++++++-+|.|-+||.++
T Consensus 227 r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 227 RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 32 3333367777999999999999999999999984
No 128
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=8.2e-20 Score=134.61 Aligned_cols=202 Identities=16% Similarity=0.230 Sum_probs=159.6
Q ss_pred CCCccceEEEEECC---CCCcEEEEEe-cCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCe
Q 021160 31 PMNSIRLNAIVIDP---RNPNYFAVGG-SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL 106 (316)
Q Consensus 31 ~gh~~~v~~~~~~~---~~~~~l~~g~-~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 106 (316)
..|.+.|..++|-. .+..+|++++ .|..|.+-|..+++ ..+...+|.+.|.++ ++=+|-+
T Consensus 133 nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~---------------~~~a~sghtghilal-yswn~~m 196 (350)
T KOG0641|consen 133 NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ---------------GFHALSGHTGHILAL-YSWNGAM 196 (350)
T ss_pred eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC---------------cceeecCCcccEEEE-EEecCcE
Confidence 35889999999953 2335677664 57777777877775 223338999999887 4556778
Q ss_pred EEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC--c---CCceeeeEEEecCCCcEEEEeccCCeEEEEe
Q 021160 107 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--R---NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 180 (316)
Q Consensus 107 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd 180 (316)
++++ .|.+|++||++-. ..+..+... . ....|.+++. .|.|++|++|-.|....+||
T Consensus 197 ~~sgsqdktirfwdlrv~----------------~~v~~l~~~~~~~glessavaav~v-dpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVN----------------SCVNTLDNDFHDGGLESSAVAAVAV-DPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred EEccCCCceEEEEeeecc----------------ceeeeccCcccCCCcccceeEEEEE-CCCcceeeeccCCCceEEEE
Confidence 8886 6999999999876 333333211 1 1134889998 99999999999999999999
Q ss_pred ccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC-----CCCCcccceeeeecCCCCceeEEec
Q 021160 181 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-----LPDNAEKIMKANKQGREDHSRITLT 255 (316)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~ 255 (316)
++.++.++.+..|...|.++.|+|...++++++.|.+|++-|++.....+ ...|.+.++++- |.+..-.+++.+
T Consensus 260 irg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~r-wh~~d~sfisss 338 (350)
T KOG0641|consen 260 IRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCR-WHPQDFSFISSS 338 (350)
T ss_pred eeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEE-ecCccceeeecc
Confidence 99999999999999999999999999999999999999999998765333 336777777777 677777888999
Q ss_pred CCCeEEEEEec
Q 021160 256 PDVIMHVLRLQ 266 (316)
Q Consensus 256 ~d~~~~~w~~~ 266 (316)
.|.++.+|.+.
T Consensus 339 adkt~tlwa~~ 349 (350)
T KOG0641|consen 339 ADKTATLWALN 349 (350)
T ss_pred CcceEEEeccC
Confidence 99999999753
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=1.1e-20 Score=153.92 Aligned_cols=255 Identities=14% Similarity=0.132 Sum_probs=186.3
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 110 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 110 (316)
.|..-|.+++++... +.+.+|+. |.|+|||+....- ..|+..+.. ..-...|.+....|+|+-|+. +
T Consensus 417 ~HGEvVcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~------k~PvsqLdc----l~rdnyiRSckL~pdgrtLivGG 484 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPT-RHVYTGGK-GCVKVWDISQPGN------KSPVSQLDC----LNRDNYIRSCKLLPDGRTLIVGG 484 (705)
T ss_pred ccCcEEEEEEecCCc-ceeEecCC-CeEEEeeccCCCC------CCccccccc----cCcccceeeeEecCCCceEEecc
Confidence 477888999999877 89999887 8999999975421 223322211 112457889999999985554 6
Q ss_pred cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160 111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 190 (316)
Q Consensus 111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~ 190 (316)
.-.++.|||+.... +.-...-.........++. +||.+..++++.||.|.|||+.....++.|
T Consensus 485 eastlsiWDLAapT----------------prikaeltssapaCyALa~-spDakvcFsccsdGnI~vwDLhnq~~Vrqf 547 (705)
T KOG0639|consen 485 EASTLSIWDLAAPT----------------PRIKAELTSSAPACYALAI-SPDAKVCFSCCSDGNIAVWDLHNQTLVRQF 547 (705)
T ss_pred ccceeeeeeccCCC----------------cchhhhcCCcchhhhhhhc-CCccceeeeeccCCcEEEEEcccceeeecc
Confidence 78889999998762 1111111111122566777 999999999999999999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160 191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 270 (316)
Q Consensus 191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~ 270 (316)
++|+..+.|+.++++|..|-||+-|.+||-||++.+.......+...|+++- ..+.+.+++.+-.++.+.+......++
T Consensus 548 qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg-~cP~~dWlavGMens~vevlh~skp~k 626 (705)
T KOG0639|consen 548 QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLG-YCPTGDWLAVGMENSNVEVLHTSKPEK 626 (705)
T ss_pred cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecc-cCCCccceeeecccCcEEEEecCCccc
Confidence 9999999999999999999999999999999999887444444666777776 678888999999999888776654322
Q ss_pred c--------eeE-EeecccccccccCCCCeEEEEeccCCC--CCCCCCCcceeeecC
Q 021160 271 L--------AYR-ERRYNAADFESDEEEGETYLLGFSDSD--ASSEGGGNQRECIIS 316 (316)
Q Consensus 271 ~--------~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~ 316 (316)
- +.. .|.+.+.+..+...|..+.+|...-|- -.+-|.+..-+|-||
T Consensus 627 yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS 683 (705)
T KOG0639|consen 627 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIS 683 (705)
T ss_pred eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeec
Confidence 1 222 678888888887777767666544332 234445666667664
No 130
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=3.2e-19 Score=147.25 Aligned_cols=250 Identities=12% Similarity=0.092 Sum_probs=170.6
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+|.|++||+.+.+....+.. ...+.+++|+|++..++++++.++.|++||..+++..
T Consensus 10 d~~v~~~d~~t~~~~~~~~~------------~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~----------- 66 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPV------------GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI----------- 66 (300)
T ss_pred CCEEEEEECCCCceEEEEEC------------CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-----------
Confidence 68999999988765544432 1235689999998434467788999999999887621
Q ss_pred cccccccCCCcccEEEEEEccCCCeEE-Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLI-SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
..+ ..+. .+..++|+|+++.++ ++ .++.+++||+.+. ..+..+... .. +.+++|
T Consensus 67 ---~~~-~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~----------------~~~~~~~~~-~~--~~~~~~ 122 (300)
T TIGR03866 67 ---GTL-PSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETR----------------KVLAEIPVG-VE--PEGMAV 122 (300)
T ss_pred ---Eec-cCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCC----------------eEEeEeeCC-CC--cceEEE
Confidence 111 1222 245788999998554 44 5899999999876 444444422 22 678898
Q ss_pred ecCCCcEEEEeccCC-eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEE-EEeCCCcEEEecCCCCC-CCCCCCCc-
Q 021160 160 FGPNDEYVMSGSDCG-HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTD-FPPLPDNA- 235 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg-~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-s~~~d~~i~iwd~~~~~-~~~~~~~~- 235 (316)
+|++.++++++.++ .+.+||..+++....+.. ...+..++|+|+++.++ ++..++.|++||+++++ ...+..+.
T Consensus 123 -~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~ 200 (300)
T TIGR03866 123 -SPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP 200 (300)
T ss_pred -CCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc
Confidence 99999999988765 567889988887665543 23457899999999875 44568999999998876 23222111
Q ss_pred ----cc--ceeeeecCCCCce-eEEecCCCeEEEEEecccCccee---------EEeeccccccccc-CCCCeEEEEecc
Q 021160 236 ----EK--IMKANKQGREDHS-RITLTPDVIMHVLRLQRRQTLAY---------RERRYNAADFESD-EEEGETYLLGFS 298 (316)
Q Consensus 236 ----~~--~~~~~~~~~~~~~-~~s~~~d~~~~~w~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~v~~~~~~ 298 (316)
.. ...+. ++++++. +++...++.+.+||+.+.+.... ..+.|++..+... ..++.|.+||..
T Consensus 201 ~~~~~~~~~~~i~-~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 201 GVHPEAVQPVGIK-LTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred ccccccCCccceE-ECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 11 11222 5677766 45556677899999876543322 1466777777654 567889999998
Q ss_pred CCC
Q 021160 299 DSD 301 (316)
Q Consensus 299 ~~~ 301 (316)
++.
T Consensus 280 ~~~ 282 (300)
T TIGR03866 280 ALK 282 (300)
T ss_pred CCc
Confidence 765
No 131
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=2.4e-20 Score=150.09 Aligned_cols=205 Identities=14% Similarity=0.192 Sum_probs=156.8
Q ss_pred CccceEEEEECCCCC-cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC--eEEE
Q 021160 33 NSIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS 109 (316)
Q Consensus 33 h~~~v~~~~~~~~~~-~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s 109 (316)
|.++|++++|+|... +++|+|..-|+|-+||+.+.+- .. .-..+...|..+|.++.|+|... ++.+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-----d~------d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-----DK------DGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----cc------CceEEeccCCccccceEecCCChhheeee
Confidence 678999999999886 6889999999999999973320 01 11223377899999999999874 6666
Q ss_pred ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee-EE
Q 021160 110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VR 188 (316)
Q Consensus 110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~-~~ 188 (316)
+.||+|++-|+++. ..-..+........+.++.| +.+...++.+..=|.+.+||++++.. ..
T Consensus 254 SyDGtiR~~D~~~~----------------i~e~v~s~~~d~~~fs~~d~-~~e~~~vl~~~~~G~f~~iD~R~~~s~~~ 316 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGN----------------ISEEVLSLDTDNIWFSSLDF-SAESRSVLFGDNVGNFNVIDLRTDGSEYE 316 (498)
T ss_pred ccCceeeeeeecch----------------hhHHHhhcCccceeeeeccc-cCCCccEEEeecccceEEEEeecCCccch
Confidence 78999999999876 22222333233334778888 77777788888888999999998665 66
Q ss_pred EeecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCC-C----CCCCCCcccceeeeecCCCCceeEEecCCCeEEE
Q 021160 189 LMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD-F----PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV 262 (316)
Q Consensus 189 ~~~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~ 262 (316)
.+..|...|.+++++|-.++ |||+|.|++.+|||++... . .....|...| ..+.++|.+..+++.+.|..|++
T Consensus 317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV-~sAyFSPs~gtl~TT~~D~~IRv 395 (498)
T KOG4328|consen 317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSV-NSAYFSPSGGTLLTTCQDNEIRV 395 (498)
T ss_pred hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccccee-eeeEEcCCCCceEeeccCCceEE
Confidence 67778889999999998877 9999999999999998643 1 2233466655 55558886666999999999999
Q ss_pred EEec
Q 021160 263 LRLQ 266 (316)
Q Consensus 263 w~~~ 266 (316)
||..
T Consensus 396 ~dss 399 (498)
T KOG4328|consen 396 FDSS 399 (498)
T ss_pred eecc
Confidence 9983
No 132
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=8.5e-21 Score=152.09 Aligned_cols=235 Identities=13% Similarity=0.092 Sum_probs=172.5
Q ss_pred cEEEEEecCCcEEEEeCcCCccc-CCCCCCC---Cc--eecccccccCCCcccEEEEEEccCCC-eEEEe-cCCcEEEEE
Q 021160 48 NYFAVGGSDEYARVYDIRKCHWY-SPISSDT---PV--DTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFE 119 (316)
Q Consensus 48 ~~l~~g~~dg~v~~wd~~~~~~~-~~~~~~~---~~--~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd 119 (316)
+++|.|+.|..|.|||+.-.... +.+.... .. ..........+|+..|..++|+..-+ +|+++ .|.+|++||
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 79999999999999999743211 0000000 00 00001112247999999999998775 88885 699999999
Q ss_pred cCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEE
Q 021160 120 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ 199 (316)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~ 199 (316)
+.++ ++...+..|... |.++.|++..+.+|++|+.|++|.+.|.+........-...+.|-.
T Consensus 273 ~~~g----------------~p~~s~~~~~k~--Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk 334 (463)
T KOG0270|consen 273 VDTG----------------KPKSSITHHGKK--VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK 334 (463)
T ss_pred cCCC----------------CcceehhhcCCc--eeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence 9999 788888878765 9999998888999999999999999999853322222224578999
Q ss_pred EEEcCCCCe-EEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCccee---
Q 021160 200 LEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY--- 273 (316)
Q Consensus 200 ~~~~p~~~~-l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~--- 273 (316)
++|.|.... ++++..||+|+-+|++... +.++..|..+|..+........++++++.|+.+++|++...+....
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~ 414 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH 414 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc
Confidence 999998766 7788899999999999763 7788889999977776666788999999999999999875433111
Q ss_pred -------EEe---ecccccccccCCCCeEEEEeccCC
Q 021160 274 -------RER---RYNAADFESDEEEGETYLLGFSDS 300 (316)
Q Consensus 274 -------~~~---~~~~~~~~~~~~~~~v~~~~~~~~ 300 (316)
.++ ......++.+...+++.+||...+
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 111 123355566666667888887654
No 133
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=8.3e-22 Score=174.45 Aligned_cols=229 Identities=14% Similarity=0.187 Sum_probs=177.8
Q ss_pred ceeeEEEEeeCC---CcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCC
Q 021160 2 VLFNMLFDLRSD---SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP 78 (316)
Q Consensus 2 ~g~v~vwd~~~~---~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~ 78 (316)
+|.|-+||...- ....++ .+..-|.+.|..+.|++..++++|+|+.||.|.|||+...+
T Consensus 89 dG~I~ly~p~~~~~~~~~~~l--------a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~---------- 150 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVL--------ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE---------- 150 (1049)
T ss_pred CCceEEecchhhccCcchHHH--------hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC----------
Confidence 688999998652 222222 12234899999999999987899999999999999998755
Q ss_pred ceecccccc-cCCCcccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee
Q 021160 79 VDTFCPRHL-IGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK 155 (316)
Q Consensus 79 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 155 (316)
.+.+. ...-.+.|.+++|+..-. +|+++ .+|.+.|||++.. +++-.+..+.....+.
T Consensus 151 ----tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~----------------~pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 151 ----TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK----------------KPIIKLSDTPGRMHCS 210 (1049)
T ss_pred ----CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC----------------CcccccccCCCcccee
Confidence 11111 122357899999998764 77775 6889999999987 5666666555544478
Q ss_pred eEEEecCC-CcEEEEeccCC---eEEEEeccC-CeeEEEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEecCCCCC-C
Q 021160 156 GVNFFGPN-DEYVMSGSDCG---HLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTD-F 228 (316)
Q Consensus 156 ~~~~~~~~-~~~l~~~~~dg---~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~iwd~~~~~-~ 228 (316)
.++| +|+ ...++++++|. .|.+||++. ...++.+.+|...|.++.|++.+ .++++++.|+.|.+|+.++++ +
T Consensus 211 ~l~W-hP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 211 VLAW-HPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred eeee-CCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence 8999 555 45666666644 599999875 45677888999999999999977 669999999999999999998 7
Q ss_pred CCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160 229 PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 269 (316)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~ 269 (316)
..++...++.....|...+...+...+.||.|.++.+....
T Consensus 290 ~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 290 GELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 78887778888887666677799999999999999987653
No 134
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.1e-22 Score=161.45 Aligned_cols=246 Identities=50% Similarity=0.884 Sum_probs=192.4
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
++.|.-+|++...+...+.+...++.. .-..++++.+|.+++++++|+.|..+++||.+.-... ....++..
T Consensus 254 D~~v~~~Dlr~~~pa~~~~cr~~~~~~-----~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e---~~n~~~~~ 325 (559)
T KOG1334|consen 254 DAVVFHIDLRQDVPAEKFVCREADEKE-----RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE---ENNGVLDK 325 (559)
T ss_pred ccceeeeeeccCCccceeeeeccCCcc-----ceeeeeEecCCCCccccccCChhhhhhhhcccchhhc---cccchhhh
Confidence 567888999998887777765544211 1367899999999889999999999999998754311 12236788
Q ss_pred cccccccCCCcccEEEEEEccCC-CeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTS-ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
||+.++.......|++++|+.++ .+|++.+|-.|+++....+.++.+...++. .....+.+++|.+..+|..+.|+
T Consensus 326 f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~---~~~~k~vYKGHrN~~TVKgVNFf 402 (559)
T KOG1334|consen 326 FCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPR---EQYVKRVYKGHRNSRTVKGVNFF 402 (559)
T ss_pred cCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcch---hhccchhhcccccccccceeeec
Confidence 89988877777889999999766 588888999999997766655444433322 11233459999998899999999
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCccccee
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMK 240 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 240 (316)
.|...|+++|++-|.|+||+-.+++.+..+.+....|+||.-||..+.||+++-|..|+||...+.+....+...+.++.
T Consensus 403 GPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~~~lk~vi~ 482 (559)
T KOG1334|consen 403 GPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATEPTLLKQVIK 482 (559)
T ss_pred cCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccccChhhHHHHHh
Confidence 99999999999999999999999999999988777999999999999999999999999999977766666656666766
Q ss_pred eeecCC-CCceeEEecCCC
Q 021160 241 ANKQGR-EDHSRITLTPDV 258 (316)
Q Consensus 241 ~~~~~~-~~~~~~s~~~d~ 258 (316)
.+.+.. +..+-++...|.
T Consensus 483 rN~~~~~ed~~~~t~~~d~ 501 (559)
T KOG1334|consen 483 RNKRERDEDSLTVTDPFDQ 501 (559)
T ss_pred hhccccccccccccCcHHH
Confidence 665553 344455555554
No 135
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=2.3e-20 Score=158.10 Aligned_cols=222 Identities=14% Similarity=0.180 Sum_probs=175.1
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC--CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~--~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
|.++|+||.+.+..-.+-. |..+|.|+.|+.- +.++||+++.|+-|++||+...-
T Consensus 481 GnlrVy~Lq~l~~~~~~eA-----------HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny------------ 537 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEA-----------HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY------------ 537 (1080)
T ss_pred CceEEEEehhhhhhhheec-----------ccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc------------
Confidence 7899999987665433333 7889999999742 32689999999999999997543
Q ss_pred ecccccccCCCcccEEEEEEccCC--CeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc---CCcee
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTS--ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR---NSQTV 154 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i 154 (316)
.+.....+|...|+++.|...| ..+++ |.|+.|++=-.+.. .....|..|. ....+
T Consensus 538 --~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~----------------~~g~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 538 --DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKA----------------SSGRLFPRHTQTLSKTTL 599 (1080)
T ss_pred --chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccc----------------cCceeccccccccccceE
Confidence 3444448999999999999887 34555 67877664332211 1112222221 11348
Q ss_pred eeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec---CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCC
Q 021160 155 KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPP 230 (316)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~---~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~ 230 (316)
++|+. .|..+++++++.|..|+||++++|+....|++ |.+..-.+...|.+.|+|+...|+++.++|..+++ +.+
T Consensus 600 YDm~V-dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 600 YDMAV-DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred EEeee-CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 99998 99999999999999999999999999999975 66777889999999999999999999999999888 888
Q ss_pred CCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160 231 LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~ 267 (316)
+.+|.+.+..+. +.+|-+.+++.+.||.|.+|.+..
T Consensus 679 m~GHsE~VTG~k-F~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 679 MTGHSEAVTGVK-FLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hcCcchheeeee-ecccchhheeecCCceEEEEECch
Confidence 999999886665 888999999999999999999854
No 136
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.4e-19 Score=138.94 Aligned_cols=237 Identities=14% Similarity=0.160 Sum_probs=162.0
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEEC-CCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID-PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~-~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
+++|+|||.+.....-..+. ..+ .|.+.|..+.|. |.=++.+|+++.|+++.||.-...+. ..+-.
T Consensus 34 Dq~vkI~d~~~~s~~W~~Ts-~Wr------ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~------~~~~~ 100 (361)
T KOG2445|consen 34 DQTVKIWDSTSDSGTWSCTS-SWR------AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE------EAHGR 100 (361)
T ss_pred CCcEEEEeccCCCCceEEee-eEE------ecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc------ccccc
Confidence 67899999865543322222 122 388999999995 44338999999999999998642221 11111
Q ss_pred ecccccccCCCcccEEEEEEccCC--CeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceee-------CCcC
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTS--ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-------GHRN 150 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 150 (316)
.......+......|+.+.|.|.. -.|++ +.||.++||+.... ..++.+. ....+. .+.
T Consensus 101 ~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp-----~nLs~W~-----Lq~Ei~~~~~pp~~~~- 169 (361)
T KOG2445|consen 101 RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP-----MNLSQWT-----LQHEIQNVIDPPGKNK- 169 (361)
T ss_pred eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc-----cccccch-----hhhhhhhccCCccccc-
Confidence 122233335667889999999975 46676 57999999998654 2222222 222222 122
Q ss_pred CceeeeEEEecCC---CcEEEEeccC-----CeEEEEeccCC----eeEEEeecCccceEEEEEcCCC----CeEEEEeC
Q 021160 151 SQTVKGVNFFGPN---DEYVMSGSDC-----GHLFIWKKKGG----KLVRLMVGDRHVVNQLEPHPHI----PMFATCGI 214 (316)
Q Consensus 151 ~~~i~~~~~~~~~---~~~l~~~~~d-----g~v~~wd~~~~----~~~~~~~~~~~~v~~~~~~p~~----~~l~s~~~ 214 (316)
....|+.| +|. .++|+.|+.+ +.++||....+ ..+..+.+|+.+|++++|.|+. .+||+++.
T Consensus 170 -~~~~CvsW-n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 170 -QPCFCVSW-NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred -CcceEEee-ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 23678888 553 5678888876 47888886543 3456778999999999999964 35999999
Q ss_pred CCcEEEecCCCCC---------------------CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160 215 EKTVKLWAPMPTD---------------------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 266 (316)
Q Consensus 215 d~~i~iwd~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~ 266 (316)
|| |+||.+.... +..+.+|...+..+. |...+..+.+.+.||.+|+|...
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~-wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVR-WNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEE-EeeeeeEEeecCCCceeeehhhh
Confidence 99 9999987311 233556777776666 66778899999999999999754
No 137
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=1e-19 Score=152.11 Aligned_cols=245 Identities=13% Similarity=0.133 Sum_probs=165.2
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCC--------
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS-------- 74 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~-------- 74 (316)
-++++||+.+.+....-. +.||.+.|.+++|.|.++..|++|+.||.+.|||++........+
T Consensus 122 sT~r~Wdvk~s~l~G~~~---------~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~ 192 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGRL---------NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGR 192 (720)
T ss_pred ceeeeeeeccceeeccee---------ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcc
Confidence 478999999887654421 236999999999999999999999999999999998554211100
Q ss_pred C---CCCceecc--cccccCCCcccEEE---EEEccCCCeEEE-e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcc-
Q 021160 75 S---DTPVDTFC--PRHLIGKNNIHITG---LAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ- 143 (316)
Q Consensus 75 ~---~~~~~~~~--~~~~~~~~~~~i~~---~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~- 143 (316)
+ +.|.+... ...- ..+...|.+ +.+..|...||+ + .|+.|++||++....+.-. .+..
T Consensus 193 ~n~~ptpskp~~kr~~k~-kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~----------ep~~~ 261 (720)
T KOG0321|consen 193 HNTAPTPSKPLKKRIRKW-KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQ----------EPRGS 261 (720)
T ss_pred ccCCCCCCchhhcccccc-ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccccc----------CCCcc
Confidence 0 01111110 0111 234444544 555667777777 4 4999999999876321111 1111
Q ss_pred -eeeCCcC-CceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe--eEEEeecCcc--ceEEEEEcCCCCeEEEEeCCCc
Q 021160 144 -VYSGHRN-SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--LVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKT 217 (316)
Q Consensus 144 -~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~--~~~~~~~~~~--~v~~~~~~p~~~~l~s~~~d~~ 217 (316)
.+..|.. ...+.++.. ...|.+|++.+.|+.|++|++.+-. ++..+.++.. .-..-..+|++.++++|+.|..
T Consensus 262 ~~~~t~skrs~G~~nL~l-DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ 340 (720)
T KOG0321|consen 262 DKYPTHSKRSVGQVNLIL-DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ 340 (720)
T ss_pred cCccCcccceeeeEEEEe-cCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc
Confidence 1222210 112666666 6668888888889999999987532 3333433321 1122346899999999999999
Q ss_pred EEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 218 VKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 218 i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
.++|.+.... ...+.+|...+....|.+.+-.-+++++.|..+++|++..+
T Consensus 341 ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 341 AYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 9999998776 66778999999888876667777888899999999999654
No 138
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=5e-20 Score=140.23 Aligned_cols=206 Identities=14% Similarity=0.208 Sum_probs=158.6
Q ss_pred CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc--CCCeEEEe
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLISY 110 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~ 110 (316)
+-+.|.|+.|.|++ ..+++-. |..|.+|++.....+ +..+.. .....|....++-+|+| +++.+++.
T Consensus 122 avg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~--------vaev~s-s~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 122 AVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKI--------VAEVLS-SESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred HhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcch--------heeecc-cccccccceecccccCCCCccceEEEe
Confidence 45689999999987 6666655 789999999876521 111111 11134667788999999 56799999
Q ss_pred cCCcEEEEEcCCCCCCCCccCCccccccCCCcce-eeCCcCCceeeeEEEecCC-CcEEEEeccCCeEEEEeccC-CeeE
Q 021160 111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKG-GKLV 187 (316)
Q Consensus 111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~~wd~~~-~~~~ 187 (316)
+|+++..||+++. +.... -..|... +..+.| .|+ ..+|++|++||.|++||.+. ..++
T Consensus 191 ~d~tl~~~D~RT~----------------~~~~sI~dAHgq~--vrdlDf-Npnkq~~lvt~gDdgyvriWD~R~tk~pv 251 (370)
T KOG1007|consen 191 SDSTLQFWDLRTM----------------KKNNSIEDAHGQR--VRDLDF-NPNKQHILVTCGDDGYVRIWDTRKTKFPV 251 (370)
T ss_pred CCCcEEEEEccch----------------hhhcchhhhhcce--eeeccC-CCCceEEEEEcCCCccEEEEeccCCCccc
Confidence 9999999999987 33333 3455544 999999 565 45688999999999999874 5678
Q ss_pred EEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEecCCC------------------------------CCCCCCCCCcc
Q 021160 188 RLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMP------------------------------TDFPPLPDNAE 236 (316)
Q Consensus 188 ~~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~iwd~~~------------------------------~~~~~~~~~~~ 236 (316)
..+.+|...|.++.|+|.- +++++++.|..|.+|.... +.+.++..|.+
T Consensus 252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED 331 (370)
T KOG1007|consen 252 QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED 331 (370)
T ss_pred cccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc
Confidence 8999999999999999954 5588999999999996431 12345667889
Q ss_pred cceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 237 KIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 237 ~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
.++.++|.+.++-.+++.+.||.+.+=++.+.
T Consensus 332 SVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 332 SVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred ceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 99999988889999999999999888776544
No 139
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.2e-19 Score=137.49 Aligned_cols=243 Identities=11% Similarity=0.137 Sum_probs=162.1
Q ss_pred eEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcE
Q 021160 37 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELV 115 (316)
Q Consensus 37 v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i 115 (316)
..|+.|++.| .++|+|..||.|.+||+.+.. +..++.+|..+|.+++|+++|+.|++ +.|..|
T Consensus 26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~---------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 26 AECCQFSRWG-DYLAVGCANGRVVIYDFDTFR---------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred cceEEeccCc-ceeeeeccCCcEEEEEccccc---------------hhhhhhccccceeEEEecCCCCEeeeecCCcee
Confidence 6799999999 899999999999999999775 33344899999999999999998877 479999
Q ss_pred EEEEcCCCCCCCCccCCc--cc---------------cccC-------CCcceeeCCcCCc---e-eeeEEEecCCCcEE
Q 021160 116 YLFEKNMGLGPSPLSLSP--ED---------------LQKR-------EEPQVYSGHRNSQ---T-VKGVNFFGPNDEYV 167 (316)
Q Consensus 116 ~iwd~~~~~~~~~~~~~~--~~---------------~~~~-------~~~~~~~~~~~~~---~-i~~~~~~~~~~~~l 167 (316)
.+||+..+.......++. +. +... .+.+.+....... . ..+..| .+.|++|
T Consensus 90 ~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~f-dr~g~yI 168 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVF-DRRGKYI 168 (405)
T ss_pred EEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccc-cCCCCEE
Confidence 999999875111111110 00 0000 0111111111000 0 122234 7889999
Q ss_pred EEeccCCeEEEEeccCCeeEEEeecCc-cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-------CCCCCCCcc---
Q 021160 168 MSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-------FPPLPDNAE--- 236 (316)
Q Consensus 168 ~~~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~--- 236 (316)
++|...|.+.+++..+-+++..++--. ..|.++.++..++.|+..+.|+.||.|+++.-. ........+
T Consensus 169 itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN 248 (405)
T KOG1273|consen 169 ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN 248 (405)
T ss_pred EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence 999999999999999999998887555 789999999999999999999999999986321 110110111
Q ss_pred -cceeeeecCCCCceeEEecC-CCeEEEEEecccCcceeE-----------EeecccccccccCCCCeEEEEec
Q 021160 237 -KIMKANKQGREDHSRITLTP-DVIMHVLRLQRRQTLAYR-----------ERRYNAADFESDEEEGETYLLGF 297 (316)
Q Consensus 237 -~~~~~~~~~~~~~~~~s~~~-d~~~~~w~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~ 297 (316)
.......++.++.++++++. ...+.+|.-..+...... .+.|-...+++- +.|.||+|..
T Consensus 249 k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 249 KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred hhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 11233445668888887764 477889986655332221 122333333333 5667777754
No 140
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=2.4e-19 Score=136.58 Aligned_cols=211 Identities=16% Similarity=0.203 Sum_probs=158.4
Q ss_pred CccceEEEEECCCCCcEEEEEecC-------CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSD-------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE 105 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~d-------g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 105 (316)
|.+.|..++-+|..+.+|+++-.+ ..+.||.++........ .++. +...+...+-+.|.|+.|.|++.
T Consensus 62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~---~tlE--~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS---STLE--CVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc---chhh--HhhcCCHHHhCceeeEEEcCCCC
Confidence 678999999999997888887442 34789998755321110 0111 22333334556899999999999
Q ss_pred eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceee-----CCcCCceeeeEEEecC--CCcEEEEeccCCeEEE
Q 021160 106 LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-----GHRNSQTVKGVNFFGP--NDEYVMSGSDCGHLFI 178 (316)
Q Consensus 106 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~v~~ 178 (316)
.+++-.|..|.+|++.... +....+. ++... .++-+| +| ++..+++. .|+++..
T Consensus 137 klasm~dn~i~l~~l~ess---------------~~vaev~ss~s~e~~~~--ftsg~W-spHHdgnqv~tt-~d~tl~~ 197 (370)
T KOG1007|consen 137 KLASMDDNNIVLWSLDESS---------------KIVAEVLSSESAEMRHS--FTSGAW-SPHHDGNQVATT-SDSTLQF 197 (370)
T ss_pred eeEEeccCceEEEEcccCc---------------chheeecccccccccce--eccccc-CCCCccceEEEe-CCCcEEE
Confidence 9999889999999998773 1122221 12322 677777 55 56666655 5899999
Q ss_pred EeccCCeeEEEee-cCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEe
Q 021160 179 WKKKGGKLVRLMV-GDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITL 254 (316)
Q Consensus 179 wd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~ 254 (316)
||+++.+....+. +|...|..+.|+|+.++ |++|+.||.|+|||.+..+ +.++.+|...+...-..+....+++++
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence 9999887766664 68889999999999877 8999999999999999876 888999999998777555578899999
Q ss_pred cCCCeEEEEEecc
Q 021160 255 TPDVIMHVLRLQR 267 (316)
Q Consensus 255 ~~d~~~~~w~~~~ 267 (316)
+.|..+.+|....
T Consensus 278 ~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 278 GSDSAVNLSCASS 290 (370)
T ss_pred CCCceeEEEeccc
Confidence 9999999997653
No 141
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=8e-19 Score=134.81 Aligned_cols=154 Identities=15% Similarity=0.190 Sum_probs=125.8
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 113 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 113 (316)
...|+++.|+|.+ ..|++++.||.+++|++....+. .. -.|..++.+.+|.++.+.+.++.||
T Consensus 13 ~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~~l~---------------~~-~~~~~plL~c~F~d~~~~~~G~~dg 75 (323)
T KOG1036|consen 13 EDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPANSLK---------------LK-FKHGAPLLDCAFADESTIVTGGLDG 75 (323)
T ss_pred hhceeeEEEcCcC-CcEEEEeccCcEEEEeccchhhh---------------hh-eecCCceeeeeccCCceEEEeccCc
Confidence 5689999999988 78888889999999999876522 11 4578899999999977777778999
Q ss_pred cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecC
Q 021160 114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 193 (316)
Q Consensus 114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~ 193 (316)
+|+.+|+.++ ....+..|..+ +.++.+ .+....+++|+.|++|++||.+.......+..
T Consensus 76 ~vr~~Dln~~-----------------~~~~igth~~~--i~ci~~-~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~- 134 (323)
T KOG1036|consen 76 QVRRYDLNTG-----------------NEDQIGTHDEG--IRCIEY-SYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ- 134 (323)
T ss_pred eEEEEEecCC-----------------cceeeccCCCc--eEEEEe-eccCCeEEEcccCccEEEEecccccccccccc-
Confidence 9999999987 44556667755 999999 78888999999999999999997655555543
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 194 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 194 ~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
...|.++... ++.|+.|+.|..+.+||++...
T Consensus 135 ~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 135 GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred CceEEEEecc--CCEEEEeecCceEEEEEccccc
Confidence 3478887764 6688898899999999998754
No 142
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=6.4e-19 Score=151.53 Aligned_cols=273 Identities=15% Similarity=0.145 Sum_probs=188.2
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF 82 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~ 82 (316)
+.+.||+++.. ..+.+... -...|++++|+|..+++++.|..+|+|.+||++.+... +..
T Consensus 222 ~~~~vW~~~~p-~~Pe~~~~----------~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~-------~~s-- 281 (555)
T KOG1587|consen 222 GVLLVWSLKNP-NTPELVLE----------SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT-------PPS-- 281 (555)
T ss_pred ceEEEEecCCC-CCceEEEe----------cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC-------CCc--
Confidence 46899999887 33333333 15689999999999999999999999999999987621 111
Q ss_pred ccccccCCCcccEEEEEEccCCC---eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 83 CPRHLIGKNNIHITGLAYSNTSE---LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~---~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
........|..+++.+.|..+-. ++.++.||.|+.|+++....+........... ...... .. ..+++++|
T Consensus 282 ~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~---~~~~~~-~~--~~~t~~~F 355 (555)
T KOG1587|consen 282 GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH---KGQQSS-KA--VGATSLKF 355 (555)
T ss_pred ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc---cccccc-cc--cceeeEee
Confidence 22233367899999999977532 55557899999999876532211111000000 000011 11 22889999
Q ss_pred ecCCCcEEEEeccCCeEEEEeccCC--------eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC-CCC-CC
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKGG--------KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-PTD-FP 229 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~~--------~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~-~~~-~~ 229 (316)
...+...++.|++.|.|.--+.... +....+..|.++|.++.++|-+..++..+.|.+++||.-. ... +.
T Consensus 356 ~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~ 435 (555)
T KOG1587|consen 356 EPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL 435 (555)
T ss_pred ccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcch
Confidence 6667888999999999987443321 1233455688999999999987664444449999999976 333 55
Q ss_pred CCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc------------eeEEeecccccccccCCCCeEEEEec
Q 021160 230 PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL------------AYRERRYNAADFESDEEEGETYLLGF 297 (316)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~v~~~~~ 297 (316)
.+..+...+...+|.......++++..+|.+.+||+...... ....+++.+..++.++..|.++++++
T Consensus 436 ~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 436 SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 566666767777755557889999999999999999754211 11145556889999999999999999
Q ss_pred cCCC
Q 021160 298 SDSD 301 (316)
Q Consensus 298 ~~~~ 301 (316)
++.-
T Consensus 516 ~~~l 519 (555)
T KOG1587|consen 516 SESL 519 (555)
T ss_pred Cchh
Confidence 7654
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=2.5e-19 Score=144.30 Aligned_cols=253 Identities=13% Similarity=0.108 Sum_probs=177.6
Q ss_pred ceeeEEEEeeCCC--cceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160 2 VLFNMLFDLRSDS--ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV 79 (316)
Q Consensus 2 ~g~v~vwd~~~~~--~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~ 79 (316)
.|+|-+||+.+.+ ...++.. .+|..+|.++.|+|.+...+++.+.||+|++-|++....
T Consensus 209 ~G~VG~Wn~~~~~~d~d~v~~f---------~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~---------- 269 (498)
T KOG4328|consen 209 GGQVGLWNFGTQEKDKDGVYLF---------TPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNIS---------- 269 (498)
T ss_pred CCcEEEEecCCCCCccCceEEe---------ccCCccccceEecCCChhheeeeccCceeeeeeecchhh----------
Confidence 4899999997332 2233322 258999999999999989999999999999999987641
Q ss_pred eecccccccC--CCcccEEEEEEccCCC-eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160 80 DTFCPRHLIG--KNNIHITGLAYSNTSE-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG 156 (316)
Q Consensus 80 ~~~~~~~~~~--~~~~~i~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 156 (316)
..+.. .....+..+.|+.+.. .++...=|.+.+||+++.. .....+.-|... |.+
T Consensus 270 -----e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~---------------s~~~~~~lh~kK--I~s 327 (498)
T KOG4328|consen 270 -----EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG---------------SEYENLRLHKKK--ITS 327 (498)
T ss_pred -----HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCC---------------ccchhhhhhhcc--cce
Confidence 11111 2345677788888776 4444555699999999873 234555666644 999
Q ss_pred EEEecCCCcEEEEeccCCeEEEEeccCC--ee--EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC----CCC-
Q 021160 157 VNFFGPNDEYVMSGSDCGHLFIWKKKGG--KL--VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM----PTD- 227 (316)
Q Consensus 157 ~~~~~~~~~~l~~~~~dg~v~~wd~~~~--~~--~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~----~~~- 227 (316)
|++++-...+|++++.|++++|||++.- +. +.....|...|.++.|||.+-.|+|.+.|..|+|||.. ...
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence 9995556778999999999999998752 22 23334699999999999998889999999999999984 222
Q ss_pred CCCCCCCc----cc--ceeeeecCCCCceeEEecCCCeEEEEEecccCcc------------eeEEeecccc-cccccCC
Q 021160 228 FPPLPDNA----EK--IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL------------AYRERRYNAA-DFESDEE 288 (316)
Q Consensus 228 ~~~~~~~~----~~--~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~------------~~~~~~~~~~-~~~~~~~ 288 (316)
..+++ |. .. .+... |.++..+++.+..-..|-+++-..++.. ...++-|... .++++..
T Consensus 408 ~~~I~-Hn~~t~RwlT~fKA~-W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s 485 (498)
T KOG4328|consen 408 LGTIP-HNNRTGRWLTPFKAA-WDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNS 485 (498)
T ss_pred cceee-ccCcccccccchhhe-eCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCc
Confidence 22221 21 11 22333 7788888998888888888886554311 1113444444 6667788
Q ss_pred CCeEEEEec
Q 021160 289 EGETYLLGF 297 (316)
Q Consensus 289 ~~~v~~~~~ 297 (316)
.|.+|+|--
T Consensus 486 ~Gki~vft~ 494 (498)
T KOG4328|consen 486 SGKIYVFTN 494 (498)
T ss_pred cceEEEEec
Confidence 888888753
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=7.8e-19 Score=134.87 Aligned_cols=243 Identities=16% Similarity=0.215 Sum_probs=168.6
Q ss_pred CCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec-ccccccCCCcccEEEEEEccC--CCe
Q 021160 30 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF-CPRHLIGKNNIHITGLAYSNT--SEL 106 (316)
Q Consensus 30 ~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~ 106 (316)
+.+|..-|.++.|++.| +.+|+|+.|++|+|||.+... .++ +.... ..|.+.|..+.|.+. |+.
T Consensus 9 ~s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s-----------~~W~~Ts~W-rah~~Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDS-----------GTWSCTSSW-RAHDGSIWRVVWAHPEFGQV 75 (361)
T ss_pred ccCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCC-----------CceEEeeeE-EecCCcEEEEEecCccccce
Confidence 35689999999999999 999999999999999975443 111 22222 679999999999764 578
Q ss_pred EEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC--CcEEEEeccCCeEEEEeccC
Q 021160 107 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKG 183 (316)
Q Consensus 107 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~~wd~~~ 183 (316)
++++ .|+++.||.-.... . ... -.......++...... |+++.| .|. |-.+++++.||.++||+...
T Consensus 76 vA~cS~Drtv~iWEE~~~~-~-~~~-----~~~Wv~~ttl~Dsrss--V~DV~F-aP~hlGLklA~~~aDG~lRIYEA~d 145 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKS-E-EAH-----GRRWVRRTTLVDSRSS--VTDVKF-APKHLGLKLAAASADGILRIYEAPD 145 (361)
T ss_pred EEEEecCCceeeeeecccc-c-ccc-----cceeEEEEEeecCCcc--eeEEEe-cchhcceEEEEeccCcEEEEEecCC
Confidence 8885 69999999864220 0 000 0011223344444444 999999 664 66899999999999999643
Q ss_pred C------eeEEEee-------cCccceEEEEEcCC---CCeEEEEeCC-----CcEEEecCCCC-----CCCCCCCCccc
Q 021160 184 G------KLVRLMV-------GDRHVVNQLEPHPH---IPMFATCGIE-----KTVKLWAPMPT-----DFPPLPDNAEK 237 (316)
Q Consensus 184 ~------~~~~~~~-------~~~~~v~~~~~~p~---~~~l~s~~~d-----~~i~iwd~~~~-----~~~~~~~~~~~ 237 (316)
. .+...+. .+..+..|+.|+|. .++||.|+.+ +.++||..... ++.++.+|..+
T Consensus 146 p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp 225 (361)
T KOG2445|consen 146 PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP 225 (361)
T ss_pred ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc
Confidence 2 2223332 35567889999984 3568888755 37888876433 26788899999
Q ss_pred ceeeeecCC---CCceeEEecCCCeEEEEEeccc-----------------------------CcceeE-Eeeccccccc
Q 021160 238 IMKANKQGR---EDHSRITLTPDVIMHVLRLQRR-----------------------------QTLAYR-ERRYNAADFE 284 (316)
Q Consensus 238 ~~~~~~~~~---~~~~~~s~~~d~~~~~w~~~~~-----------------------------~~~~~~-~~~~~~~~~~ 284 (316)
|..+.|.+. .-.++++++.|| |++|.++.. +..++. .+.-.+..+.
T Consensus 226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLs 304 (361)
T KOG2445|consen 226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILS 304 (361)
T ss_pred ceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEe
Confidence 988885443 345788899999 999998742 112333 4455667777
Q ss_pred ccCCCCeEEEEe
Q 021160 285 SDEEEGETYLLG 296 (316)
Q Consensus 285 ~~~~~~~v~~~~ 296 (316)
+.++||.|-.|.
T Consensus 305 StGdDG~VRLWk 316 (361)
T KOG2445|consen 305 STGDDGCVRLWK 316 (361)
T ss_pred ecCCCceeeehh
Confidence 777777776664
No 145
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=6.8e-19 Score=141.97 Aligned_cols=203 Identities=10% Similarity=0.167 Sum_probs=155.5
Q ss_pred CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE-e
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-Y 110 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~ 110 (316)
-.++|+++.|||.. .++++++.|+.+++|.+.... ...++.. .-...+|.+..|.|+|. .+++ +
T Consensus 212 s~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~-------N~~lqS~------~l~~fPi~~a~f~p~G~~~i~~s~ 277 (514)
T KOG2055|consen 212 SHGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKV-------NPKLQSI------HLEKFPIQKAEFAPNGHSVIFTSG 277 (514)
T ss_pred CcCCceEEEecCCC-ceEEEecCCCcEEEEEecCcc-------Chhheee------eeccCccceeeecCCCceEEEecc
Confidence 35789999999988 799999999999999997543 1112211 12256899999999998 6665 5
Q ss_pred cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160 111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 190 (316)
Q Consensus 111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~ 190 (316)
....++.||+.+.. ...+....++.. +.+..... ++++++|+..+..|.|.+....+++.+..+
T Consensus 278 rrky~ysyDle~ak--------------~~k~~~~~g~e~-~~~e~FeV-Shd~~fia~~G~~G~I~lLhakT~eli~s~ 341 (514)
T KOG2055|consen 278 RRKYLYSYDLETAK--------------VTKLKPPYGVEE-KSMERFEV-SHDSNFIAIAGNNGHIHLLHAKTKELITSF 341 (514)
T ss_pred cceEEEEeeccccc--------------cccccCCCCccc-chhheeEe-cCCCCeEEEcccCceEEeehhhhhhhhhee
Confidence 68889999998762 112233334442 34677777 899999999999999999999999999888
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160 191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 266 (316)
Q Consensus 191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~ 266 (316)
+- .+.|..++|+.+++.|+.++.+|.|.+||++... ++.+.....---...+.+.++.++++|+..|.|.+++.+
T Consensus 342 Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 342 KI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred ee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 73 5789999999999998888889999999999886 444443222222333356788899999999999999854
No 146
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=155.68 Aligned_cols=224 Identities=13% Similarity=0.134 Sum_probs=173.4
Q ss_pred eeEEEEeeCCCcceEEEe-ccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160 4 FNMLFDLRSDSATRLFYC-SSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF 82 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~-~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~ 82 (316)
..+.|+.+.+..-+.+.- ...+ .-...+++++.++-| ++.+.|.+.|.|-+|++.++-.... |
T Consensus 423 ~~~tW~~~n~~~G~~~L~~~~~~------~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~s---------f 486 (910)
T KOG1539|consen 423 SAYTWNFRNKTSGRHVLDPKRFK------KDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKS---------F 486 (910)
T ss_pred eEEEEeccCcccccEEecCcccc------ccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeecc---------c
Confidence 457888887665322221 1111 123578999999999 9999999999999999998853211 1
Q ss_pred ccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEec
Q 021160 83 CPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG 161 (316)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 161 (316)
.-...|..+|+.++...-++.+++ +.+|-+++||..+. .+...+.-.. .+.++.+ +
T Consensus 487 ---~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k----------------~l~~~l~l~~---~~~~iv~-h 543 (910)
T KOG1539|consen 487 ---GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK----------------VLKKSLRLGS---SITGIVY-H 543 (910)
T ss_pred ---ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCc----------------ceeeeeccCC---Ccceeee-e
Confidence 011578999999999888887777 58999999999876 3444444222 2777777 7
Q ss_pred CCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceee
Q 021160 162 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKA 241 (316)
Q Consensus 162 ~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 241 (316)
.....++.+.+|-.|+++|..+.+.++.+.+|...|++++|||+|++|++++.|++||+||+.++.+.-......+...+
T Consensus 544 r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sl 623 (910)
T KOG1539|consen 544 RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSL 623 (910)
T ss_pred ehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceee
Confidence 77888999999999999999999999999999999999999999999999999999999999998844333234444444
Q ss_pred eecCCCCceeEEecCC-CeEEEEEecc
Q 021160 242 NKQGREDHSRITLTPD-VIMHVLRLQR 267 (316)
Q Consensus 242 ~~~~~~~~~~~s~~~d-~~~~~w~~~~ 267 (316)
.++|++.++++...| .-|.+|.-+.
T Consensus 624 -s~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 624 -SFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred -EECCCCCEEEEEEecCceEEEEEchh
Confidence 489999999999988 7889996443
No 147
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=2.9e-19 Score=150.74 Aligned_cols=222 Identities=14% Similarity=0.177 Sum_probs=165.7
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 110 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 110 (316)
+||.+.|..++|+|.| .+|++.+.|.+-|+|-.-..+ .....+ .-...|...++|+++-+....++++
T Consensus 358 SGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q--------~~wHEi---aRPQiHGyDl~c~~~vn~~~~FVSg 425 (764)
T KOG1063|consen 358 SGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQ--------QEWHEI---ARPQIHGYDLTCLSFVNEDLQFVSG 425 (764)
T ss_pred ccccccceeeeecCCC-CEEEEeccccceeeecccccc--------cceeee---cccccccccceeeehccCCceeeec
Confidence 5899999999999999 899999999999998765222 011111 1124577889999999865566775
Q ss_pred -cCCcEEEEEcCCCC-----------------CCCCccCCc--------c--c---------------------------
Q 021160 111 -NDELVYLFEKNMGL-----------------GPSPLSLSP--------E--D--------------------------- 135 (316)
Q Consensus 111 -~d~~i~iwd~~~~~-----------------~~~~~~~~~--------~--~--------------------------- 135 (316)
..+-+++|+..... .+....++. . .
T Consensus 426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 56778899886322 000000000 0 0
Q ss_pred ------cccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCC-----eEEEEeccCCeeEEEeecCccceEEEEEcC
Q 021160 136 ------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG-----HLFIWKKKGGKLVRLMVGDRHVVNQLEPHP 204 (316)
Q Consensus 136 ------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p 204 (316)
.-..+.++.+.||... |++++. +|+++++|+++... .|++|+..+-..++.+.+|.-.|+.++|+|
T Consensus 506 EdqLq~~tLwPEv~KLYGHGyE--v~~l~~-s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGHGYE--VYALAI-SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP 582 (764)
T ss_pred HHHHHHhccchhhHHhccCcee--EEEEEe-cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence 0111334556788876 999998 99999999998643 589999999888889999999999999999
Q ss_pred CCCeEEEEeCCCcEEEecCCCCC-----CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 205 HIPMFATCGIEKTVKLWAPMPTD-----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 205 ~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
++++|+++|.|+++.+|...... ......|...|..+. |++++.+++|+|.|..+++|.....
T Consensus 583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcs-W~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCS-WSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcc-cCcccceeEEecCCceEEEEeccCc
Confidence 99999999999999999985443 223556666665555 8999999999999999999998765
No 148
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=7.3e-19 Score=147.06 Aligned_cols=280 Identities=9% Similarity=0.044 Sum_probs=181.0
Q ss_pred ceeeEEEEeeCCCcc-eEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 2 VLFNMLFDLRSDSAT-RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~-~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
+|.|.++|.+...-. +...+. ....|...|..+.|.| +..+|++++.|.++++||++..++..
T Consensus 73 ~G~i~l~dt~~~~fr~ee~~lk------~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G--------- 136 (720)
T KOG0321|consen 73 DGGIILFDTKSIVFRLEERQLK------KPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVG--------- 136 (720)
T ss_pred CCceeeecchhhhcchhhhhhc------ccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeec---------
Confidence 577888887654321 111111 1234899999999999 55899999999999999999887421
Q ss_pred ecccccccCCCcccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCC-----------CCccCCccccccCCCcceeeC
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGP-----------SPLSLSPEDLQKREEPQVYSG 147 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 147 (316)
..+..+|...+.+++|.|... .|++| .||.|.|||++-.... .....+....+..+.......
T Consensus 137 ----~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 137 ----GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred ----ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 113478999999999999886 66665 7999999999754300 000000000000011112222
Q ss_pred CcCC--ceeeeEEEecCCCcEEEEecc-CCeEEEEeccCCeeEEE--------eecC---ccceEEEEEcCCCCeEEEEe
Q 021160 148 HRNS--QTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRL--------MVGD---RHVVNQLEPHPHIPMFATCG 213 (316)
Q Consensus 148 ~~~~--~~i~~~~~~~~~~~~l~~~~~-dg~v~~wd~~~~~~~~~--------~~~~---~~~v~~~~~~p~~~~l~s~~ 213 (316)
+... ..|+.+.| .|...|++++. |+.|++||++....... +..| .-.+.++.....|.+|...+
T Consensus 213 ~s~ti~ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC 290 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC 290 (720)
T ss_pred ccCceeeeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence 2221 12444544 68888998887 99999999986544322 1223 23577888888889977666
Q ss_pred CCCcEEEecCCCCCCC---CCCCCcc-cceeeeecCCCCceeEEecCCCeEEEEEecccCccee-----------EEeec
Q 021160 214 IEKTVKLWAPMPTDFP---PLPDNAE-KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY-----------RERRY 278 (316)
Q Consensus 214 ~d~~i~iwd~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~-----------~~~~~ 278 (316)
.|+.|+.|++...... .+.++.. ..+.....++++.++++++.|....+|.+.+.+.... ..+.|
T Consensus 291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 7999999999876532 2333322 2233444678999999999999999999987543321 12322
Q ss_pred -ccccccccCCCCeEEEEeccCCCCC
Q 021160 279 -NAADFESDEEEGETYLLGFSDSDAS 303 (316)
Q Consensus 279 -~~~~~~~~~~~~~v~~~~~~~~~~~ 303 (316)
.-..++...+|-++-+|++.++-++
T Consensus 371 S~~t~v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 371 SATTPVATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred ccCCCceeeccCcceEEEeccCchhh
Confidence 2234444588889999999766443
No 149
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=8.1e-19 Score=148.81 Aligned_cols=233 Identities=15% Similarity=0.237 Sum_probs=181.1
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC---CeEE
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---ELLI 108 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~ 108 (316)
+-+-.+.+++.+|++ ++||+|..-|.+++|++...+. .....+|...|.|+.|+..- ++|+
T Consensus 457 d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~---------------~~~~eAHesEilcLeyS~p~~~~kLLA 520 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEY---------------TCFMEAHESEILCLEYSFPVLTNKLLA 520 (1080)
T ss_pred CcccceEEEEECCCc-ceecccCccCceEEEEehhhhh---------------hhheecccceeEEEeecCchhhhHhhh
Confidence 445679999999999 8999999999999999986652 22338899999999998743 4888
Q ss_pred Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC--cEEEEeccCCeEEEEeccCCe
Q 021160 109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND--EYVMSGSDCGHLFIWKKKGGK 185 (316)
Q Consensus 109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~v~~wd~~~~~ 185 (316)
++ .|..|++||+.... .+++++.+|... |+++.| .-+| ..+++++.|+.+.+--.+...
T Consensus 521 SasrdRlIHV~Dv~rny---------------~l~qtld~HSss--ITsvKF-a~~gln~~MiscGADksimFr~~qk~~ 582 (1080)
T KOG1408|consen 521 SASRDRLIHVYDVKRNY---------------DLVQTLDGHSSS--ITSVKF-ACNGLNRKMISCGADKSIMFRVNQKAS 582 (1080)
T ss_pred hccCCceEEEEeccccc---------------chhhhhcccccc--eeEEEE-eecCCceEEEeccCchhhheehhcccc
Confidence 85 69999999997653 578899999977 999999 5555 678888888887654443222
Q ss_pred eEEEeecC-----ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCC---CcccceeeeecCCCCceeEEecC
Q 021160 186 LVRLMVGD-----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD---NAEKIMKANKQGREDHSRITLTP 256 (316)
Q Consensus 186 ~~~~~~~~-----~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~ 256 (316)
-...+..| ...+..|+..|+.+++++++.|+.|+||+++.++ .+.+.+ |....+.+. ..|.+.++++...
T Consensus 583 ~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~-lDPSgiY~atScs 661 (1080)
T KOG1408|consen 583 SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI-LDPSGIYLATSCS 661 (1080)
T ss_pred CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEE-ECCCccEEEEeec
Confidence 12222222 2578999999999999999999999999999987 555543 444555555 6788899999999
Q ss_pred CCeEEEEEecccCcc--------eeE--EeecccccccccCCCCeEEEEeccC
Q 021160 257 DVIMHVLRLQRRQTL--------AYR--ERRYNAADFESDEEEGETYLLGFSD 299 (316)
Q Consensus 257 d~~~~~w~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~v~~~~~~~ 299 (316)
|.++-++|+-.++-. ... .|.++-..+.+...||-+|+|.+..
T Consensus 662 dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 662 DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 999999999875322 111 6778888888888999999998865
No 150
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=6e-20 Score=152.48 Aligned_cols=229 Identities=16% Similarity=0.235 Sum_probs=158.7
Q ss_pred CCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec--------cc------------cccc-
Q 021160 30 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF--------CP------------RHLI- 88 (316)
Q Consensus 30 ~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~--------~~------------~~~~- 88 (316)
+.||.+.|.+++.+|.| .+|++|+.||+|+||.+.++.++..+.....|... |. ....
T Consensus 396 yrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred EeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence 35899999999999988 99999999999999999999976544322222111 00 0000
Q ss_pred -------------------------------------------CCCcccEEEEEEccCCCeEEEe-c---CCcEEEEEcC
Q 021160 89 -------------------------------------------GKNNIHITGLAYSNTSELLISY-N---DELVYLFEKN 121 (316)
Q Consensus 89 -------------------------------------------~~~~~~i~~~~~~~~~~~l~s~-~---d~~i~iwd~~ 121 (316)
-.|...|..+.|+..|.+|++. . ...|.|.++.
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence 0133456666677777666652 1 3456666665
Q ss_pred CCCCCCCc-------------------------cCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeE
Q 021160 122 MGLGPSPL-------------------------SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHL 176 (316)
Q Consensus 122 ~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v 176 (316)
......+. .+.++++.....++.+.... ..|.+++. +|.|..|+.|+.|+.+
T Consensus 555 K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~--kwiS~msi-hp~GDnli~gs~d~k~ 631 (733)
T KOG0650|consen 555 KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGS--KWISSMSI-HPNGDNLILGSYDKKM 631 (733)
T ss_pred cccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCC--eeeeeeee-cCCCCeEEEecCCCee
Confidence 44321111 11112222222222222222 34788888 8999999999999999
Q ss_pred EEEeccC-CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC------CC-C---CCCCCCCccc----ceee
Q 021160 177 FIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM------PT-D---FPPLPDNAEK----IMKA 241 (316)
Q Consensus 177 ~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~------~~-~---~~~~~~~~~~----~~~~ 241 (316)
..+|+.- .++.+.+..|...+++++||+.-++|++|+.||++.|+.-. .. . +..+++|... ++..
T Consensus 632 ~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~ 711 (733)
T KOG0650|consen 632 CWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT 711 (733)
T ss_pred EEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee
Confidence 9999874 46788888999999999999999999999999999998532 11 1 4567777655 6666
Q ss_pred eecCCCCceeEEecCCCeEEEE
Q 021160 242 NKQGREDHSRITLTPDVIMHVL 263 (316)
Q Consensus 242 ~~~~~~~~~~~s~~~d~~~~~w 263 (316)
. |++...++++++.||++++|
T Consensus 712 ~-wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 712 I-WHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred c-ccCCCceEEecCCCceEEee
Confidence 5 78888899999999999998
No 151
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.83 E-value=3.9e-18 Score=139.18 Aligned_cols=260 Identities=12% Similarity=0.101 Sum_probs=192.6
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF 82 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~ 82 (316)
|++..|+++.+...+..-+.+..+ +..|.|++|.++| -+++|.++|.|.||+..+.+
T Consensus 222 ~H~~Fw~~~~~~l~k~~~~fek~e-------kk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~-------------- 278 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLVKRQGIFEKRE-------KKFVLCVTFLENG--DVITGDSGGNILIWSKGTNR-------------- 278 (626)
T ss_pred ceEEEEEccCCceEEEeecccccc-------ceEEEEEEEcCCC--CEEeecCCceEEEEeCCCce--------------
Confidence 688999998876554443333322 4679999999988 69999999999999998776
Q ss_pred ccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCcc--------------------------cc
Q 021160 83 CPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPE--------------------------DL 136 (316)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~--------------------------~~ 136 (316)
..++.. .|.+.|.++....+|.+|..+.|..|..||-.-.. .....++-+ .+
T Consensus 279 ~~k~~~-aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k-~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~ 356 (626)
T KOG2106|consen 279 ISKQVH-AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRK-LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTL 356 (626)
T ss_pred EEeEee-ecCCceEEEEEecCccEeecCccceEEeccccccc-cccccCchhcCCeeEEecCCCcEEEeeccceEEEeee
Confidence 444553 89999999999999998886689999999943221 011100000 01
Q ss_pred ccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC
Q 021160 137 QKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK 216 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~ 216 (316)
.. .......+|..+ .+.++. .|+...+++++.|+.+++|+ ..+++.... -..++.++.|+|.| .+|.|...|
T Consensus 357 ~~-~f~~~v~gh~de--lwgla~-hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G 428 (626)
T KOG2106|consen 357 EN-GFTLTVQGHGDE--LWGLAT-HPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATG 428 (626)
T ss_pred cC-CceEEEEecccc--eeeEEc-CCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccc
Confidence 11 122233566655 888998 89999999999999999999 455544433 34678999999999 999999999
Q ss_pred cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC------------cceeEEeeccccccc
Q 021160 217 TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ------------TLAYRERRYNAADFE 284 (316)
Q Consensus 217 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~------------~~~~~~~~~~~~~~~ 284 (316)
...+.|.++..+.++... .+.++...+++++.+++.++.|+.|.++.+.... .....+++++...+.
T Consensus 429 ~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~ 507 (626)
T KOG2106|consen 429 RWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLV 507 (626)
T ss_pred eEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEE
Confidence 999999999776666545 4455777799999999999999999999987542 223337888888888
Q ss_pred ccCCCCeEEEEe
Q 021160 285 SDEEEGETYLLG 296 (316)
Q Consensus 285 ~~~~~~~v~~~~ 296 (316)
+...+-.++.|.
T Consensus 508 ~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 508 SNSGDYEILYWK 519 (626)
T ss_pred eccCceEEEEEc
Confidence 777766677773
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=7.3e-20 Score=162.30 Aligned_cols=243 Identities=15% Similarity=0.165 Sum_probs=176.6
Q ss_pred ccceEEEEECCCCCc---EEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE
Q 021160 34 SIRLNAIVIDPRNPN---YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 109 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~---~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 109 (316)
....+.++|.+.+.. +||.|..||.|.+||...-.- ... .........|.+.|..+.|++... +|++
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~------~~~---~~~la~~~~h~G~V~gLDfN~~q~nlLAS 134 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA------NAS---EEVLATKSKHTGPVLGLDFNPFQGNLLAS 134 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhcc------Ccc---hHHHhhhcccCCceeeeeccccCCceeec
Confidence 346789999987744 588899999999999875200 000 011112267999999999999875 8888
Q ss_pred e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE
Q 021160 110 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 188 (316)
Q Consensus 110 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~ 188 (316)
| +||.|.|||+.+. +....+........|.+++|+-.....|++++.+|.+.|||++..+.+-
T Consensus 135 Ga~~geI~iWDlnn~----------------~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii 198 (1049)
T KOG0307|consen 135 GADDGEILIWDLNKP----------------ETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII 198 (1049)
T ss_pred cCCCCcEEEeccCCc----------------CCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence 6 7999999999876 2223332222223499999955566788999999999999999888777
Q ss_pred EeecCcc--ceEEEEEcCCCCe-EEEEeCCC---cEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeE
Q 021160 189 LMVGDRH--VVNQLEPHPHIPM-FATCGIEK---TVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIM 260 (316)
Q Consensus 189 ~~~~~~~--~v~~~~~~p~~~~-l~s~~~d~---~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~ 260 (316)
.+..+.. .+..++|||+... +++++.|. .|.+||++... ++.+.+|...++.+.|...|.+++++++.|+.+
T Consensus 199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe
Confidence 7765543 4778999998755 77776554 69999998654 778889999999999777788999999999999
Q ss_pred EEEEecccCccee--------E--Eeeccc-ccccccCCCCeEEEEeccCCC
Q 021160 261 HVLRLQRRQTLAY--------R--ERRYNA-ADFESDEEEGETYLLGFSDSD 301 (316)
Q Consensus 261 ~~w~~~~~~~~~~--------~--~~~~~~-~~~~~~~~~~~v~~~~~~~~~ 301 (316)
..|+.++++.+.- + .|.|.. ..++...-+|+|-++.+...+
T Consensus 279 i~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 279 ICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999998644321 1 233322 244445556667777665544
No 153
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.83 E-value=4.1e-18 Score=140.64 Aligned_cols=221 Identities=8% Similarity=0.052 Sum_probs=147.7
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
++.|++||+.+.+....+.. + ..+..++|+|++..+++++..++.+++||+.+.+..
T Consensus 52 ~~~v~~~d~~~~~~~~~~~~-----------~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~----------- 108 (300)
T TIGR03866 52 SDTIQVIDLATGEVIGTLPS-----------G-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVL----------- 108 (300)
T ss_pred CCeEEEEECCCCcEEEeccC-----------C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE-----------
Confidence 46899999887655433321 1 234678999998334455567899999999876521
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEe-cC-CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISY-ND-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
..+ . +...+.+++|+|++.+++++ .+ ..+.+||..++ +....... ... ..+++|
T Consensus 109 ---~~~-~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~----------------~~~~~~~~-~~~--~~~~~~ 164 (300)
T TIGR03866 109 ---AEI-P-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY----------------EIVDNVLV-DQR--PRFAEF 164 (300)
T ss_pred ---eEe-e-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC----------------eEEEEEEc-CCC--ccEEEE
Confidence 111 1 12235789999999977775 34 45778898765 33332222 222 567888
Q ss_pred ecCCCcEEEEe-ccCCeEEEEeccCCeeEEEeecCc-----c--ceEEEEEcCCCCeEE-EEeCCCcEEEecCCCCCCCC
Q 021160 160 FGPNDEYVMSG-SDCGHLFIWKKKGGKLVRLMVGDR-----H--VVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTDFPP 230 (316)
Q Consensus 160 ~~~~~~~l~~~-~~dg~v~~wd~~~~~~~~~~~~~~-----~--~v~~~~~~p~~~~l~-s~~~d~~i~iwd~~~~~~~~ 230 (316)
++++++++++ ..++.|++||+.+++.+..+..+. . ....++|+|++++++ +.+.++.+.+||+++.+...
T Consensus 165 -s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 165 -TADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred -CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 8999988654 469999999999998777664321 1 234688999999844 44556789999998776332
Q ss_pred CCCCcccceeeeecCCCCceeEEe-cCCCeEEEEEecccCcc
Q 021160 231 LPDNAEKIMKANKQGREDHSRITL-TPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~s~-~~d~~~~~w~~~~~~~~ 271 (316)
...+...+..+. +++++.+++++ ..++.|++||+.+++..
T Consensus 244 ~~~~~~~~~~~~-~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 244 YLLVGQRVWQLA-FTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred EEEeCCCcceEE-ECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 212233444454 78888887765 56899999999987554
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=1.7e-18 Score=134.14 Aligned_cols=242 Identities=14% Similarity=0.225 Sum_probs=173.9
Q ss_pred CCccceEEEEECC----CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC---
Q 021160 32 MNSIRLNAIVIDP----RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--- 104 (316)
Q Consensus 32 gh~~~v~~~~~~~----~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--- 104 (316)
+|+.+|..++|++ +.+..+++.+. ..+.+|.....-.+ ..+ ....-..|......++|+-+.
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~i---------r~l-q~y~D~d~~Esfytcsw~yd~~~~ 104 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGI---------RLL-QSYADEDHDESFYTCSWSYDSNTG 104 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccce---------eee-eeccCCCCCcceEEEEEEecCCCC
Confidence 4788999999985 45467777765 56888887643211 111 111112466777788887653
Q ss_pred C-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc
Q 021160 105 E-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 182 (316)
Q Consensus 105 ~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~ 182 (316)
. ++|. |.-|.|+|.|+.++ +....+.+|... |..+.+++...++++++|.|..|++|+++
T Consensus 105 ~p~la~~G~~GvIrVid~~~~----------------~~~~~~~ghG~s--INeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSG----------------QCSKNYRGHGGS--INEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CeeEEeecceeEEEEEecchh----------------hhccceeccCcc--chhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 3 6666 57899999999988 788899999977 99999966667899999999999999999
Q ss_pred CCeeEEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC----------------CCCCCCcc--cceee
Q 021160 183 GGKLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF----------------PPLPDNAE--KIMKA 241 (316)
Q Consensus 183 ~~~~~~~~---~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~----------------~~~~~~~~--~~~~~ 241 (316)
+..++..+ .+|.+.|.++.|++++.+|++++.|.++++|++...+. ..++.... +.++.
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 99999887 46999999999999999999999999999999984320 01111000 11100
Q ss_pred eecCC--------CCceeEEecCCCeEEEEEecc-cCc-----c-----------------e---eEEeecccccccccC
Q 021160 242 NKQGR--------EDHSRITLTPDVIMHVLRLQR-RQT-----L-----------------A---YRERRYNAADFESDE 287 (316)
Q Consensus 242 ~~~~~--------~~~~~~s~~~d~~~~~w~~~~-~~~-----~-----------------~---~~~~~~~~~~~~~~~ 287 (316)
..... =++++++-+-++.|..|.... ++. + . .+.+.+-...++.+.
T Consensus 247 ~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn 326 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN 326 (385)
T ss_pred cccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc
Confidence 00111 157899999999999998721 111 0 1 114566778889999
Q ss_pred CCCeEEEEeccCCCC
Q 021160 288 EEGETYLLGFSDSDA 302 (316)
Q Consensus 288 ~~~~v~~~~~~~~~~ 302 (316)
..|.||+||++..+.
T Consensus 327 q~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 327 QSGKVYVWDLDNNEP 341 (385)
T ss_pred CCCcEEEEECCCCCC
Confidence 999999999977654
No 155
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.4e-19 Score=137.32 Aligned_cols=248 Identities=7% Similarity=0.078 Sum_probs=172.1
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.|.|-|||+.+....+++.. |-.+|++++|+++| +.|++++.|-.+.+||+..+.+.+.++.+.|+..
T Consensus 44 nG~vvI~D~~T~~iar~lsa-----------H~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l~rirf~spv~~ 111 (405)
T KOG1273|consen 44 NGRVVIYDFDTFRIARMLSA-----------HVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWG 111 (405)
T ss_pred CCcEEEEEccccchhhhhhc-----------cccceeEEEecCCC-CEeeeecCCceeEEEeccCCCceeEEEccCccce
Confidence 58899999998876666654 78899999999999 9999999999999999999998777665555522
Q ss_pred cccc---------cccC----------------------CCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCc
Q 021160 82 FCPR---------HLIG----------------------KNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPL 129 (316)
Q Consensus 82 ~~~~---------~~~~----------------------~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 129 (316)
.... .... .....-.+..|.+.|+++.+| +.|.+.++|..+.
T Consensus 112 ~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~------ 185 (405)
T KOG1273|consen 112 AQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL------ 185 (405)
T ss_pred eeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh------
Confidence 1100 0000 001112233477788888886 7999999999887
Q ss_pred cCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC----C---ee--EEEeec--CccceE
Q 021160 130 SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----G---KL--VRLMVG--DRHVVN 198 (316)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~----~---~~--~~~~~~--~~~~v~ 198 (316)
+.+..++-... ..|.++.+ +..|++|+.-+.|+.|+.|+++. | ++ .+.+.. .+-.-.
T Consensus 186 ----------e~vas~rits~-~~IK~I~~-s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk 253 (405)
T KOG1273|consen 186 ----------ECVASFRITSV-QAIKQIIV-SRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK 253 (405)
T ss_pred ----------eeeeeeeechh-eeeeEEEE-eccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh
Confidence 66666664441 23889998 99999999999999999999762 1 11 111110 123456
Q ss_pred EEEEcCCCCeEEEEe-CCCcEEEecCCCCC-CCCCCCCccc-ceeeeecCCCCceeEEecCCCeEEEEEecccCcceeEE
Q 021160 199 QLEPHPHIPMFATCG-IEKTVKLWAPMPTD-FPPLPDNAEK-IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRE 275 (316)
Q Consensus 199 ~~~~~p~~~~l~s~~-~d~~i~iwd~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~ 275 (316)
+++|+.+|.+++.++ .-..++||.-..+. ++.+.+.... ....+ |.+-...+++. ..|.+++|...... .+..
T Consensus 254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~-whp~rp~i~si-~sg~v~iw~~~~~e--nwsa 329 (405)
T KOG1273|consen 254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVN-WHPVRPIIASI-ASGVVYIWAVVQVE--NWSA 329 (405)
T ss_pred heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecc-cccceeeeeec-cCCceEEEEeeccc--chhh
Confidence 788999999976665 45679999999888 5555555533 44455 66655566666 78999999865443 2334
Q ss_pred eecccccc
Q 021160 276 RRYNAADF 283 (316)
Q Consensus 276 ~~~~~~~~ 283 (316)
+.|+-..+
T Consensus 330 fAPdFqel 337 (405)
T KOG1273|consen 330 FAPDFQEL 337 (405)
T ss_pred cCchHHHH
Confidence 44444333
No 156
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.7e-18 Score=130.48 Aligned_cols=268 Identities=11% Similarity=0.062 Sum_probs=174.0
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
++.|+|||++.......-.+...-+ -+.-+.+.|.|+-...+++.-...++++|.+...+--. ...+...
T Consensus 107 Dr~Ir~w~~~DF~~~eHr~~R~nve-------~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~---~~~~~v~ 176 (420)
T KOG2096|consen 107 DRSIRLWDVRDFENKEHRCIRQNVE-------YDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGS---GSHHFVH 176 (420)
T ss_pred CceEEEEecchhhhhhhhHhhcccc-------CCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCC---CCccccc
Confidence 6889999998654322211111110 12457889999986677777777889999886443100 0011111
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
..-..+...|...+..+-....+.+++++ .|..|.+|++.. +.++.+...... -+..+.
T Consensus 177 ~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-----------------q~L~~idtnq~~--n~~aav- 236 (420)
T KOG2096|consen 177 IDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-----------------QLLQSIDTNQSS--NYDAAV- 236 (420)
T ss_pred ccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC-----------------ceeeeecccccc--ccceee-
Confidence 11122345577778888777777899885 699999999984 466666655543 556666
Q ss_pred cCCCcEEEEeccCCeEEEEecc---CC-----eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC----C-
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKK---GG-----KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT----D- 227 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~---~~-----~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~----~- 227 (316)
+|+|+++++++-.-.|++|.+- .| +.+..+++|.+.|..++|+|+...+++.|.||+++|||..-. +
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999953 22 345678899999999999999999999999999999997532 1
Q ss_pred CCCCC-------CCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc-----------eeEEeecccccccccCCC
Q 021160 228 FPPLP-------DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL-----------AYRERRYNAADFESDEEE 289 (316)
Q Consensus 228 ~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 289 (316)
...+. ......+.+. .+|++..+ +.+....++++..++++.. ....+.+++.++++..+.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~-lsP~g~~l-A~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLE-LSPSGDSL-AVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEE-eCCCCcEE-EeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce
Confidence 11121 1112223333 55655444 4455677888887775433 122566777777655443
Q ss_pred CeEEEEeccCCCC
Q 021160 290 GETYLLGFSDSDA 302 (316)
Q Consensus 290 ~~v~~~~~~~~~~ 302 (316)
.+.++.-.++.+
T Consensus 395 -~vrv~~ntpg~~ 406 (420)
T KOG2096|consen 395 -YVRVIRNTPGWH 406 (420)
T ss_pred -eeeeecCCCchh
Confidence 355666445543
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=6.5e-19 Score=143.46 Aligned_cols=255 Identities=14% Similarity=0.107 Sum_probs=187.9
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 83 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~ 83 (316)
.+++||......+..+..++.++ .+.++.|+..+--.+++.+.|..+++|.-.... .+ + .
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~p---------g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~--~~------V---p 72 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEP---------GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT--PE------V---P 72 (673)
T ss_pred ceEEeecccccCccccccCCCCC---------cceeeeccccceEEEeecCCceeEEEecccCCC--Cc------c---c
Confidence 68999998887777776665542 489999998762222334578888888754321 00 0 0
Q ss_pred cccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC
Q 021160 84 PRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 162 (316)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 162 (316)
......+ +.-.|++......++++ |..+.|+|||++.. ...+.+++|... |+++.| ..
T Consensus 73 ~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k----------------l~hr~lkdh~st--vt~v~Y-N~ 131 (673)
T KOG4378|consen 73 RVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAK----------------LIHRFLKDHQST--VTYVDY-NN 131 (673)
T ss_pred eeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHH----------------HHhhhccCCcce--eEEEEe-cC
Confidence 0011112 23345555555577777 47999999999876 566778899865 999999 78
Q ss_pred CCcEEEEeccCCeEEEEeccCCeeEEEeecC-ccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCC--CCCCCCCcccc
Q 021160 163 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-RHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKI 238 (316)
Q Consensus 163 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~ 238 (316)
...+||+++..|.|.+..+.++.....|... ...|.-+.|+|..+. |.+++.+|.|.+||+.... ......|..+.
T Consensus 132 ~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~ 211 (673)
T KOG4378|consen 132 TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPC 211 (673)
T ss_pred CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCc
Confidence 8899999999999999999998877777644 345668999998877 7789999999999998876 44445677766
Q ss_pred eeeeecCC-CCceeEEecCCCeEEEEEecccCcc---e------eEEeecccccccccCCCCeEEEEeccCC
Q 021160 239 MKANKQGR-EDHSRITLTPDVIMHVLRLQRRQTL---A------YRERRYNAADFESDEEEGETYLLGFSDS 300 (316)
Q Consensus 239 ~~~~~~~~-~~~~~~s~~~d~~~~~w~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 300 (316)
..++ +++ +..++++.+.|..|.++|...+... . ...+.+++..+..+...|+++.+|+..-
T Consensus 212 ~gic-fspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 212 RGIC-FSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred Ccce-ecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 5565 555 6778999999999999998765221 2 2278899999999999999999998654
No 158
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.6e-18 Score=141.90 Aligned_cols=220 Identities=14% Similarity=0.146 Sum_probs=167.4
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.|.|.-||+.+.++...+... .+.|.+++.+|.+ ..++.|+.||.+..++...+++.
T Consensus 89 sg~i~EwDl~~lk~~~~~d~~-----------gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~----------- 145 (691)
T KOG2048|consen 89 SGSITEWDLHTLKQKYNIDSN-----------GGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKIT----------- 145 (691)
T ss_pred CceEEEEecccCceeEEecCC-----------CcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEE-----------
Confidence 689999999987765554442 6789999999998 89999999998777777766532
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcc-----eeeCCc-CCcee
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-----VYSGHR-NSQTV 154 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~i 154 (316)
........++.+.+++|+|++..+++| .||.|++||...+. .+. ...... .+.-|
T Consensus 146 --~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~----------------t~~~~~~~~d~l~k~~~~iV 207 (691)
T KOG2048|consen 146 --YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ----------------TLHIITMQLDRLSKREPTIV 207 (691)
T ss_pred --EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc----------------eEEEeeecccccccCCceEE
Confidence 222224457899999999999977775 79999999998872 222 111111 12238
Q ss_pred eeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-----CC
Q 021160 155 KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----FP 229 (316)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-----~~ 229 (316)
+++.|. ....|++|...|+|.+||...+.+++.+..|...|.+++..+++..+++++.|+.|.-|...+.. ..
T Consensus 208 WSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~ 285 (691)
T KOG2048|consen 208 WSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINS 285 (691)
T ss_pred EEEEEe--ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeec
Confidence 889883 45679999999999999999999999999999999999999999999999999999999877663 22
Q ss_pred CCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160 230 PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~ 267 (316)
....|...+...+.... .+++++.|..+-+--..+
T Consensus 286 ~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 286 RRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSRE 320 (691)
T ss_pred cccCCcccceeeeeecc---eEEecceeeEEEEccccc
Confidence 23335555544443332 889999999888776655
No 159
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=8.3e-19 Score=135.65 Aligned_cols=209 Identities=13% Similarity=0.108 Sum_probs=153.5
Q ss_pred ccceEEEEEC-------CCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCc---ccEEEEEEccC
Q 021160 34 SIRLNAIVID-------PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN---IHITGLAYSNT 103 (316)
Q Consensus 34 ~~~v~~~~~~-------~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ 103 (316)
...|...+|- |+. +++|+.+.+.-|++||.-++++.... .. -.|. ....+++|+||
T Consensus 104 g~tvydy~wYs~M~s~qP~t-~l~a~ssr~~PIh~wdaftG~lraSy------------~~-ydh~de~taAhsL~Fs~D 169 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPST-NLFAVSSRDQPIHLWDAFTGKLRASY------------RA-YDHQDEYTAAHSLQFSPD 169 (406)
T ss_pred CCEEEEEEeeeccccCCCcc-ceeeeccccCceeeeeccccccccch------------hh-hhhHHhhhhheeEEecCC
Confidence 3467777774 555 79999999999999999999854221 11 1122 23468999999
Q ss_pred CCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCccee-eCC-cCCceeeeEEEecCCCcEEEEeccCCeEEEEec
Q 021160 104 SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-SGH-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181 (316)
Q Consensus 104 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~ 181 (316)
|+.|.++....|++||+..... +. ....++ .+. .....+.+++|++.+...++.|+....+-||.-
T Consensus 170 GeqlfaGykrcirvFdt~RpGr---------~c---~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~ 237 (406)
T KOG2919|consen 170 GEQLFAGYKRCIRVFDTSRPGR---------DC---PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND 237 (406)
T ss_pred CCeEeecccceEEEeeccCCCC---------CC---cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEec
Confidence 9999999999999999943210 00 011111 111 111338889994445569999999999999999
Q ss_pred cCCeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEecCCCCC--CCCCCCCcccceeeee--cCCCCceeEEecC
Q 021160 182 KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD--FPPLPDNAEKIMKANK--QGREDHSRITLTP 256 (316)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~ 256 (316)
....++..+.+|.+.|+.++|+++|+.|.+|+ .|-.|-.||++... +..+..|...--+... ..+.+++|++++.
T Consensus 238 ~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t 317 (406)
T KOG2919|consen 238 DGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT 317 (406)
T ss_pred CCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC
Confidence 88999999999999999999999999988887 57789999998765 5556555542222222 3467899999999
Q ss_pred CCeEEEEEeccc
Q 021160 257 DVIMHVLRLQRR 268 (316)
Q Consensus 257 d~~~~~w~~~~~ 268 (316)
||.|++||++..
T Consensus 318 dG~V~vwdlk~~ 329 (406)
T KOG2919|consen 318 DGSVRVWDLKDL 329 (406)
T ss_pred CccEEEEecCCC
Confidence 999999999873
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=9.1e-19 Score=142.62 Aligned_cols=198 Identities=11% Similarity=0.094 Sum_probs=153.7
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.|.|+|||++...+.+.+ ++|...|+++.++-.+ .+||+++..|.|.|..+.++.
T Consensus 100 ~~~Vkiwdl~~kl~hr~l-----------kdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~------------- 154 (673)
T KOG4378|consen 100 SGCVKIWDLRAKLIHRFL-----------KDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQ------------- 154 (673)
T ss_pred CceeeehhhHHHHHhhhc-----------cCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCc-------------
Confidence 478999999854443332 3588999999999988 899999999999999999876
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEE--ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLIS--YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
....+..+....+.-+.|+|..+++.+ +.+|.|.+||+.... +.......|..+ ...++|
T Consensus 155 -~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s---------------p~~~~~~~HsAP--~~gicf 216 (673)
T KOG4378|consen 155 -KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS---------------PIFHASEAHSAP--CRGICF 216 (673)
T ss_pred -cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC---------------cccchhhhccCC--cCccee
Confidence 222332333566779999999885554 469999999998872 233344567765 889999
Q ss_pred ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCCCccc
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEK 237 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~ 237 (316)
.+.+..+|++.+.|..|.+||....+....+. ...+...++|.++|-+|+.|+..|.|..||++..+ +..+..|...
T Consensus 217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s 295 (673)
T KOG4378|consen 217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS 295 (673)
T ss_pred cCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc
Confidence 44456678889999999999999776665554 34578899999999999999999999999999876 6666677777
Q ss_pred ceeeee
Q 021160 238 IMKANK 243 (316)
Q Consensus 238 ~~~~~~ 243 (316)
+..++|
T Consensus 296 Vt~vaf 301 (673)
T KOG4378|consen 296 VTRVAF 301 (673)
T ss_pred eeEEEe
Confidence 766664
No 161
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.81 E-value=1.3e-17 Score=136.10 Aligned_cols=233 Identities=13% Similarity=0.197 Sum_probs=170.7
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 113 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 113 (316)
+..|..+.|+|.+++++++.+. +.+.+|+.+.+.+... ...+.......|.|++|.++|..+..-++|
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~-----------~~~fek~ekk~Vl~v~F~engdviTgDS~G 267 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKR-----------QGIFEKREKKFVLCVTFLENGDVITGDSGG 267 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEE-----------eeccccccceEEEEEEEcCCCCEEeecCCc
Confidence 4578899999999888888876 8899999988764321 111112224679999999999987777899
Q ss_pred cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee-------
Q 021160 114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL------- 186 (316)
Q Consensus 114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~------- 186 (316)
.|.||+..+. +..+....|... |.+++. -.+|.++ +|+.|..|..||-.-.+.
T Consensus 268 ~i~Iw~~~~~----------------~~~k~~~aH~gg--v~~L~~-lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe 327 (626)
T KOG2106|consen 268 NILIWSKGTN----------------RISKQVHAHDGG--VFSLCM-LRDGTLL-SGGKDRKIILWDDNYRKLRETELPE 327 (626)
T ss_pred eEEEEeCCCc----------------eEEeEeeecCCc--eEEEEE-ecCccEe-ecCccceEEeccccccccccccCch
Confidence 9999999776 455555578866 999998 6777654 599999999999321110
Q ss_pred ----E-----------------------------EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCC
Q 021160 187 ----V-----------------------------RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD 233 (316)
Q Consensus 187 ----~-----------------------------~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 233 (316)
+ ....+|......++.+|+.++++|++.|+.+++|+ ..++.--..
T Consensus 328 ~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~ 405 (626)
T KOG2106|consen 328 QFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI 405 (626)
T ss_pred hcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE
Confidence 0 02346777889999999999999999999999999 222110001
Q ss_pred CcccceeeeecCCCCceeEEecCCCeEEEEEecccC---------cceeEEeecccccccccCCCCeEEEEeccCCCC
Q 021160 234 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ---------TLAYRERRYNAADFESDEEEGETYLLGFSDSDA 302 (316)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 302 (316)
...+. ..+.+.+.+ .++.++..|...+.|.++.. ++....++|++..++.+..++.+|++..+.+..
T Consensus 406 ~~d~~-~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 406 IEDPA-ECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred ecCce-eEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 12222 344467767 88889999999999887643 223337899999999999999999999887654
No 162
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.1e-18 Score=138.24 Aligned_cols=220 Identities=14% Similarity=0.218 Sum_probs=165.8
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 83 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~ 83 (316)
.++.||+.+.+..++-.....+ ...+.....+|++ ++|+..+..|.|.+....+++++..+
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e--------~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~---------- 341 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVE--------EKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSF---------- 341 (514)
T ss_pred EEEEeeccccccccccCCCCcc--------cchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhhee----------
Confidence 5788999887765554443222 2356788889999 89999999999999999988754221
Q ss_pred cccccCCCcccEEEEEEccCCC-eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC
Q 021160 84 PRHLIGKNNIHITGLAYSNTSE-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 162 (316)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 162 (316)
.-.+.|..++|+.+++ +++++.+|.|.+||++.. .+++.+..... -.-++++. ++
T Consensus 342 ------KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~----------------~~~~rf~D~G~-v~gts~~~-S~ 397 (514)
T KOG2055|consen 342 ------KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN----------------SCLHRFVDDGS-VHGTSLCI-SL 397 (514)
T ss_pred ------eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc----------------ceEEEEeecCc-cceeeeee-cC
Confidence 1256788999999998 455578999999999987 67777764432 22466776 89
Q ss_pred CCcEEEEeccCCeEEEEeccC------CeeEEEeecCccceEEEEEcCCCCeEEEEe--CCCcEEEecCCCCC-CCCCCC
Q 021160 163 NDEYVMSGSDCGHLFIWKKKG------GKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTD-FPPLPD 233 (316)
Q Consensus 163 ~~~~l~~~~~dg~v~~wd~~~------~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~--~d~~i~iwd~~~~~-~~~~~~ 233 (316)
++.++|+|++.|.|-|||.++ .+++..+..-...|++|+|+|+.++||.+| .+..+|+-.+.+.. ...++.
T Consensus 398 ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~ 477 (514)
T KOG2055|consen 398 NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT 477 (514)
T ss_pred CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCC
Confidence 999999999999999999653 456666666677899999999999977666 56789998887766 344443
Q ss_pred Ccccc--eeeeecCCCCceeEEecCCCeEEEEEec
Q 021160 234 NAEKI--MKANKQGREDHSRITLTPDVIMHVLRLQ 266 (316)
Q Consensus 234 ~~~~~--~~~~~~~~~~~~~~s~~~d~~~~~w~~~ 266 (316)
....+ ..+..++|.+.+++.+..+|.+.+|.+.
T Consensus 478 ~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 478 SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 32222 3344489999999999999999999864
No 163
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.5e-18 Score=143.25 Aligned_cols=219 Identities=11% Similarity=0.181 Sum_probs=166.9
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 110 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 110 (316)
.|...|.+++|+|.. ..|++++.||.+++|++.... .+......|+.+| .+|.++|.|+.+.+.++.+.++
T Consensus 292 s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~-~s~~~~~epi~tf------raH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAK-KSAEKDVEPILTF------RAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cchhhhhhhhcCCCC-CeEEEeccccchhhhhhcccC-CccccceeeeEEE------ecccCceEEEEecCCceEEEeec
Confidence 478889999999988 699999999999999994311 1111223344444 8999999999999999988885
Q ss_pred cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE--
Q 021160 111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-- 188 (316)
Q Consensus 111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~-- 188 (316)
-||+|+.|++.....+... .........+.||.+. ++.+++ +.....|++++.||++++|+.....++.
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds------~dp~vl~~~l~Ghtda--vw~l~~-s~~~~~Llscs~DgTvr~w~~~~~~~~~f~ 434 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDS------YDPSVLSGTLLGHTDA--VWLLAL-SSTKDRLLSCSSDGTVRLWEPTEESPCTFG 434 (577)
T ss_pred cCceeeeeccCCCCCcccc------cCcchhccceeccccc--eeeeee-cccccceeeecCCceEEeeccCCcCccccC
Confidence 6999999988632111111 1111345678899977 999999 8888899999999999999975433300
Q ss_pred ------------------------------------------Eeec-------CccceEEEEEcCCCCeEEEEeCCCcEE
Q 021160 189 ------------------------------------------LMVG-------DRHVVNQLEPHPHIPMFATCGIEKTVK 219 (316)
Q Consensus 189 ------------------------------------------~~~~-------~~~~v~~~~~~p~~~~l~s~~~d~~i~ 219 (316)
.+.. ....+..+.++|.+.+.+++..|+.|+
T Consensus 435 ~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir 514 (577)
T KOG0642|consen 435 EPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIR 514 (577)
T ss_pred CccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCcee
Confidence 0000 013467788999999999999999999
Q ss_pred EecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 220 LWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 220 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
++|..+++ ++....|...+...+ ..+++.++++++.|+.+++|.+..+
T Consensus 515 ~~dn~~~~~l~s~~a~~~svtsla-i~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 515 FFDNKTGKILHSMVAHKDSVTSLA-IDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccccccccchheeeccceeccee-ecCCCceEEeecCCceeehhhccch
Confidence 99999988 777777877776665 7888999999999999999987644
No 164
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=9.2e-18 Score=128.12 Aligned_cols=223 Identities=13% Similarity=0.126 Sum_probs=157.1
Q ss_pred eeeEEEEeeCCCc-ceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 3 LFNMLFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 3 g~v~vwd~~~~~~-~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
-.+|+|.+...+. ...... -...+.+.|..++++..|+.-+++++.+.+-|.+..|||++++.. .
T Consensus 121 D~LRlWri~~ee~~~~~~~~---L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-------~---- 186 (364)
T KOG0290|consen 121 DFLRLWRIGDEESRVELQSV---LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-------G---- 186 (364)
T ss_pred CeEEEEeccCcCCceehhhh---hccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-------c----
Confidence 4689999874322 111111 111123347889999999999999999999999999999998731 1
Q ss_pred cccccccCCCcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
..++-+-+|...|..++|...+. ++++ |.||.+++||++... ...-.+...........++|
T Consensus 187 -~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le---------------HSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 187 -TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE---------------HSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred -ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc---------------cceEEecCCCCCCcceeecc
Confidence 23333468999999999999775 7777 689999999998762 11122332221234788888
Q ss_pred ecCCCcEEEEecc-CCeEEEEeccC-CeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCCC------CC
Q 021160 160 FGPNDEYVMSGSD-CGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF------PP 230 (316)
Q Consensus 160 ~~~~~~~l~~~~~-dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~~------~~ 230 (316)
...+.+++|+-.. ...|.+.|++. ..++..+.+|.+.|+.++|.|.... |+|++.|..+-+||+..... ..
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 6667778877544 55799999885 5678899999999999999998755 99999999999999875432 11
Q ss_pred CCCCcccceeeeecCCCCceeEEec
Q 021160 231 LPDNAEKIMKANKQGREDHSRITLT 255 (316)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~s~~ 255 (316)
......++-++.|.+..+.++..+.
T Consensus 331 ay~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 331 AYTAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred hhhccceeeeeeecccCCCEEEEEe
Confidence 1124455666665445566665544
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=1e-17 Score=132.92 Aligned_cols=202 Identities=13% Similarity=0.095 Sum_probs=149.3
Q ss_pred cCCCcccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCc
Q 021160 88 IGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 165 (316)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 165 (316)
..+|+++|..++|+|.+. .+|+| .|.+|.||.+......... ..++..+.+|... |.-++|++...+
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l---------tepvv~L~gH~rr--Vg~V~wHPtA~N 145 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL---------TEPVVELYGHQRR--VGLVQWHPTAPN 145 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc---------ccceEEEeeccee--EEEEeecccchh
Confidence 378999999999999764 77776 6999999998765211111 1466788899955 999999766788
Q ss_pred EEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeec
Q 021160 166 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQ 244 (316)
Q Consensus 166 ~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~ 244 (316)
.|++++.|..|.+|++.+|+.+-++. |...|.++.|+.+|.+|+|.+.|++|||||.+.++ +..-..|...--..+.|
T Consensus 146 VLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif 224 (472)
T KOG0303|consen 146 VLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF 224 (472)
T ss_pred hHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEE
Confidence 99999999999999999999888887 99999999999999999999999999999999998 44445676655455556
Q ss_pred CCCCceeEEec---CCCeEEEEEecccCcceeE-Eeec-cccccc-ccCCCCeEEEEeccCCC
Q 021160 245 GREDHSRITLT---PDVIMHVLRLQRRQTLAYR-ERRY-NAADFE-SDEEEGETYLLGFSDSD 301 (316)
Q Consensus 245 ~~~~~~~~s~~---~d~~~~~w~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~v~~~~~~~~~ 301 (316)
-.++.++.++- ++..+-+|+-..-+.+... +... .+..++ -+++...||+.+-.|+.
T Consensus 225 l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 225 LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSS 287 (472)
T ss_pred eccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcc
Confidence 66666554443 3577888886654444332 2211 222222 23555567777776664
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=3.7e-18 Score=140.99 Aligned_cols=213 Identities=17% Similarity=0.226 Sum_probs=149.0
Q ss_pred ceeeEEEEeeC---CCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCC
Q 021160 2 VLFNMLFDLRS---DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP 78 (316)
Q Consensus 2 ~g~v~vwd~~~---~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~ 78 (316)
+|++++|+|.. +....+....++ -+|.++|.|++..+.+ ..+++|+.||+|+.|++.... . ....
T Consensus 315 d~~lk~WnLqk~~~s~~~~~epi~tf------raH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~-d----p~ds 382 (577)
T KOG0642|consen 315 DGTLKLWNLQKAKKSAEKDVEPILTF------RAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQ-D----PDDS 382 (577)
T ss_pred ccchhhhhhcccCCccccceeeeEEE------ecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCC-C----cccc
Confidence 58899999932 222222222222 2699999999999998 899999999999999887322 0 0001
Q ss_pred ceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCC---------CCCccCCc---------------
Q 021160 79 VDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLG---------PSPLSLSP--------------- 133 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~---------~~~~~~~~--------------- 133 (316)
.........+.||.+.++.+++++...+|+++ .||++++|+...... ..+.++..
T Consensus 383 ~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~ 462 (577)
T KOG0642|consen 383 YDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFG 462 (577)
T ss_pred cCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccc
Confidence 11113334457999999999999988777775 799999999865531 00000000
Q ss_pred -cccccC---CCcceeeCCc-----CCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcC
Q 021160 134 -EDLQKR---EEPQVYSGHR-----NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP 204 (316)
Q Consensus 134 -~~~~~~---~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p 204 (316)
..+.+. ...+.+.... ....+.-+.+ .|...+.+++.+|+.|+++|..+++++.....|...++++++.|
T Consensus 463 ~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs-~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ 541 (577)
T KOG0642|consen 463 YTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVS-HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP 541 (577)
T ss_pred cccchhhhhhhheeeccccCCCcccccCccceEEe-cCCCCeeEecccCCceecccccccccchheeeccceecceeecC
Confidence 001111 1111111111 0112555665 78889999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCcEEEecCCCCC
Q 021160 205 HIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 205 ~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
++.+|++++.|+.+++|.+....
T Consensus 542 ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 542 NGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred CCceEEeecCCceeehhhccchh
Confidence 99999999999999999987654
No 167
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=4.4e-18 Score=142.71 Aligned_cols=204 Identities=15% Similarity=0.152 Sum_probs=147.3
Q ss_pred ECCCCCcEEEE--EecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEEE-ecCCcEEE
Q 021160 42 IDPRNPNYFAV--GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYL 117 (316)
Q Consensus 42 ~~~~~~~~l~~--g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~i 117 (316)
|+.+. ..+|+ .+.-|.|-||+++....+ +.. ....+. ....|+.+.|.|-. +.|+. +.||.|++
T Consensus 587 fcan~-~rvAVPL~g~gG~iai~el~~PGrL-----PDg----v~p~l~--Ngt~vtDl~WdPFD~~rLAVa~ddg~i~l 654 (1012)
T KOG1445|consen 587 FCANN-KRVAVPLAGSGGVIAIYELNEPGRL-----PDG----VMPGLF--NGTLVTDLHWDPFDDERLAVATDDGQINL 654 (1012)
T ss_pred eeecc-ceEEEEecCCCceEEEEEcCCCCCC-----Ccc----cccccc--cCceeeecccCCCChHHeeecccCceEEE
Confidence 34433 44544 356799999999854311 000 111221 24679999999955 45555 68999999
Q ss_pred EEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccce
Q 021160 118 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV 197 (316)
Q Consensus 118 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v 197 (316)
|.+..+..+.. ...+-..+..|..+ |+++.|++-....|++++.|-+|++||+.+++....+.+|++.|
T Consensus 655 Wr~~a~gl~e~---------~~tPe~~lt~h~eK--I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqI 723 (1012)
T KOG1445|consen 655 WRLTANGLPEN---------EMTPEKILTIHGEK--ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQI 723 (1012)
T ss_pred EEeccCCCCcc---------cCCcceeeecccce--EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCce
Confidence 99987632221 11455678888866 99999976678899999999999999999999999999999999
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCC----CeEEEEEeccc
Q 021160 198 NQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPD----VIMHVLRLQRR 268 (316)
Q Consensus 198 ~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d----~~~~~w~~~~~ 268 (316)
..++|+|+|+.+|+.+.||+|++|+.+... +..-.+....--....|.-++++++..+.| ..+.+++.++-
T Consensus 724 f~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 724 FGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred eEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 999999999999999999999999998876 333333222222233366788888877766 45666766553
No 168
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.2e-17 Score=123.06 Aligned_cols=223 Identities=13% Similarity=0.130 Sum_probs=146.6
Q ss_pred ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCC-CCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCc
Q 021160 36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSP-ISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL 114 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~ 114 (316)
.|.+-+++|.+ ++|++|..+|+|.+..+.+..-... .....++-. ..+|.+++..++|. ..+|+++.||.
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~------eqahdgpiy~~~f~--d~~Lls~gdG~ 82 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVP------EQAHDGPIYYLAFH--DDFLLSGGDGL 82 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceee------ccccCCCeeeeeee--hhheeeccCce
Confidence 56777899998 8999999999999999874321110 001111111 27899999999998 45888888999
Q ss_pred EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCc
Q 021160 115 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR 194 (316)
Q Consensus 115 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~ 194 (316)
|+-|..+..... ......+.+.. +.+.-.... ..|+++.. .|..+-++.++.|+.++-||+++|+....+++|+
T Consensus 83 V~gw~W~E~~es-~~~K~lwe~~~--P~~~~~~ev--PeINam~l-dP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 83 VYGWEWNEEEES-LATKRLWEVKI--PMQVDAVEV--PEINAMWL-DPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred EEEeeehhhhhh-ccchhhhhhcC--ccccCcccC--CccceeEe-ccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 999988754211 01111111110 111101111 23788877 7776667777789999999999999999999999
Q ss_pred cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCccccee-------eeecCCCCceeEEecCCCeEEEEEec
Q 021160 195 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMK-------ANKQGREDHSRITLTPDVIMHVLRLQ 266 (316)
Q Consensus 195 ~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~s~~~d~~~~~w~~~ 266 (316)
+-|.+++--.....+++|++||++|+||.++++ ...+.....+-.. +.+...+..+++++. .-.+.+|.++
T Consensus 157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLr 235 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLR 235 (325)
T ss_pred ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEecc
Confidence 999999885556678999999999999999887 3333222111100 011223455666654 4567899988
Q ss_pred ccCcceeE
Q 021160 267 RRQTLAYR 274 (316)
Q Consensus 267 ~~~~~~~~ 274 (316)
..+....+
T Consensus 236 sse~t~vf 243 (325)
T KOG0649|consen 236 SSESTCVF 243 (325)
T ss_pred CCCceEEE
Confidence 76554433
No 169
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=5.8e-18 Score=141.98 Aligned_cols=233 Identities=13% Similarity=0.155 Sum_probs=166.5
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
-|.|-|++++.....+--.+.... ....|+.+.|+|-+...||+++.||.|++|.+..+.+. -..
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~-------Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~--------e~~ 666 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLF-------NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP--------ENE 666 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccc-------cCceeeecccCCCChHHeeecccCceEEEEEeccCCCC--------ccc
Confidence 478899999876543332222222 24579999999988899999999999999999876531 112
Q ss_pred cccccccCCCcccEEEEEEccCC-CeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
..+..++.+|...|+++.|+|-. ..|++ +.|-+|++||+.++ +....+.+|++. |.+++|
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~----------------~~~~~l~gHtdq--If~~AW 728 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA----------------KLYSRLVGHTDQ--IFGIAW 728 (1012)
T ss_pred CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh----------------hhhheeccCcCc--eeEEEE
Confidence 24455558899999999999965 46666 57999999999998 778889999988 999999
Q ss_pred ecCCCcEEEEeccCCeEEEEeccCCe-eEEEeecCc-cceEEEEEcCCCCeEEEEeCCC----cEEEecCCCCCCCCCCC
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKGGK-LVRLMVGDR-HVVNQLEPHPHIPMFATCGIEK----TVKLWAPMPTDFPPLPD 233 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~~~-~~~~~~~~~-~~v~~~~~~p~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~ 233 (316)
+|+|+.+++.+.||++++|..++++ .++.-++.. ..-..+.|.-++++++..+.|. .|.+||.++-....+..
T Consensus 729 -SpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t 807 (1012)
T KOG1445|consen 729 -SPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYT 807 (1012)
T ss_pred -CCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCccee
Confidence 9999999999999999999988764 343333221 2334577888999987777664 58888877654333221
Q ss_pred Cc---ccceeeeecCCC-CceeEEecCCCeEEEEEeccc
Q 021160 234 NA---EKIMKANKQGRE-DHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 234 ~~---~~~~~~~~~~~~-~~~~~s~~~d~~~~~w~~~~~ 268 (316)
.. .+-.-+-.+..| +-+++++-.|..|.++.+.-.
T Consensus 808 ~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 808 QVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred eeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 11 110001112233 456788889999999987544
No 170
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=1.2e-18 Score=149.99 Aligned_cols=234 Identities=18% Similarity=0.314 Sum_probs=180.0
Q ss_pred cCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE
Q 021160 29 KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI 108 (316)
Q Consensus 29 ~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 108 (316)
+..||..+|+|+.|...| .++++|+.|..++||..++.. |.... .+|.+.|+.++.+....+++
T Consensus 185 rLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~--------------~lAs~-rGhs~ditdlavs~~n~~ia 248 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETAR--------------CLASC-RGHSGDITDLAVSSNNTMIA 248 (1113)
T ss_pred HHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchh--------------hhccC-CCCccccchhccchhhhhhh
Confidence 345899999999999999 999999999999999999887 44444 89999999999998888888
Q ss_pred Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC----
Q 021160 109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---- 183 (316)
Q Consensus 109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~---- 183 (316)
++ .|..|++|.+..+ .++..+.+|++. |++++| +|-. +.+.||++++||.+-
T Consensus 249 aaS~D~vIrvWrl~~~----------------~pvsvLrghtga--vtaiaf-sP~~----sss~dgt~~~wd~r~~~~~ 305 (1113)
T KOG0644|consen 249 AASNDKVIRVWRLPDG----------------APVSVLRGHTGA--VTAIAF-SPRA----SSSDDGTCRIWDARLEPRI 305 (1113)
T ss_pred hcccCceEEEEecCCC----------------chHHHHhccccc--eeeecc-Cccc----cCCCCCceEeccccccccc
Confidence 74 7999999999998 799999999977 999999 7754 778899999999761
Q ss_pred ----------CeeEEEe----------ec------CccceEEEEEcCCCCeEEE-----------EeCCCcEEEecCCCC
Q 021160 184 ----------GKLVRLM----------VG------DRHVVNQLEPHPHIPMFAT-----------CGIEKTVKLWAPMPT 226 (316)
Q Consensus 184 ----------~~~~~~~----------~~------~~~~v~~~~~~p~~~~l~s-----------~~~d~~i~iwd~~~~ 226 (316)
+.+...+ .+ ....+..++|....-.+++ +-.+..+++|++.++
T Consensus 306 y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g 385 (1113)
T KOG0644|consen 306 YVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG 385 (1113)
T ss_pred cCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc
Confidence 0111000 00 0011222334333333333 334567889999888
Q ss_pred C-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCccee----------EEeecccccccccCCCCeEEEE
Q 021160 227 D-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY----------RERRYNAADFESDEEEGETYLL 295 (316)
Q Consensus 227 ~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~ 295 (316)
. .+.+.+|...++.+.....+.+..++.+.||...|||+..+-.... ..|++++..++..++-|.+|++
T Consensus 386 ~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 386 QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEe
Confidence 7 6777788888877775566888999999999999999987633322 2688899999999999999999
Q ss_pred eccCCC
Q 021160 296 GFSDSD 301 (316)
Q Consensus 296 ~~~~~~ 301 (316)
++..++
T Consensus 466 g~gqs~ 471 (1113)
T KOG0644|consen 466 GTGQSK 471 (1113)
T ss_pred ccCCCc
Confidence 987664
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=6.6e-17 Score=126.03 Aligned_cols=256 Identities=13% Similarity=0.092 Sum_probs=168.4
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC-CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~-~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
|.|+++|..+.+....+. +|+..++.++|... ++..+.+++.||+|++||++..... +...
T Consensus 50 gsv~lyd~~tg~~l~~fk-----------~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-------a~~~ 111 (376)
T KOG1188|consen 50 GSVRLYDKGTGQLLEEFK-----------GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-------ARIS 111 (376)
T ss_pred CeEEEEeccchhhhheec-----------CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-------hhee
Confidence 678888887766555554 46778889998764 6689999999999999999976521 1111
Q ss_pred cccccccCCCc-ccEEEEEEccCCCeEEEec-----CCcEEEEEcCCCCCCCCccCCccccccCC-CcceeeCCcCCcee
Q 021160 82 FCPRHLIGKNN-IHITGLAYSNTSELLISYN-----DELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYSGHRNSQTV 154 (316)
Q Consensus 82 ~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i 154 (316)
+ ..+. .+..+++.+..+++++++. +-.|.+||++... + .......|.+. |
T Consensus 112 ~------~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q---------------q~l~~~~eSH~DD--V 168 (376)
T KOG1188|consen 112 W------TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ---------------QLLRQLNESHNDD--V 168 (376)
T ss_pred c------cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc---------------chhhhhhhhccCc--c
Confidence 1 2333 4677888777777887753 6779999999873 2 22345677766 9
Q ss_pred eeEEEecCCCcEEEEeccCCeEEEEeccCCee---EEEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEecCCCCC-CC
Q 021160 155 KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL---VRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTD-FP 229 (316)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~---~~~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~iwd~~~~~-~~ 229 (316)
+++.|++.+.++|++||.||.|.+||++.... +...-.|...|..+.|+.++ +.|.+-+...+..+|+++.+. ..
T Consensus 169 T~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 169 TQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred eeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence 99999877899999999999999999875421 22223466789999998876 347777889999999998765 21
Q ss_pred CCCCC--cc-------c-ceeeeecCC-C-CceeEEecCCCeEEEEEecc---cC------------cceeE--Eeeccc
Q 021160 230 PLPDN--AE-------K-IMKANKQGR-E-DHSRITLTPDVIMHVLRLQR---RQ------------TLAYR--ERRYNA 280 (316)
Q Consensus 230 ~~~~~--~~-------~-~~~~~~~~~-~-~~~~~s~~~d~~~~~w~~~~---~~------------~~~~~--~~~~~~ 280 (316)
.+... .. . -+-+....+ + +...+.++.-+...++.+.. +. ..+.+ .+....
T Consensus 249 ~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~ 328 (376)
T KOG1188|consen 249 WLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKN 328 (376)
T ss_pred cccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccc
Confidence 12111 00 0 011222323 2 33344444345555554431 11 11111 244556
Q ss_pred ccccccCCCCeEEEEeccC
Q 021160 281 ADFESDEEEGETYLLGFSD 299 (316)
Q Consensus 281 ~~~~~~~~~~~v~~~~~~~ 299 (316)
..+.+++++|.+.+|...|
T Consensus 329 ~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 329 DVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred ceeeccCCCceEEEEecCC
Confidence 6777889999999998743
No 172
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.77 E-value=2.9e-16 Score=132.84 Aligned_cols=244 Identities=14% Similarity=0.163 Sum_probs=187.2
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS- 109 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s- 109 (316)
-||..-|+++-|+|.+ ..|++++.|.++.+|...+..-+. +...+...+ .+.........|+|++..+++
T Consensus 264 ~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiW-------v~~vRlGe~-gg~a~GF~g~lw~~n~~~ii~~ 334 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIW-------VDVVRLGEV-GGSAGGFWGGLWSPNSNVIIAH 334 (764)
T ss_pred cCcccceEEEEEccch-hhheecccCcceEEEecCCccceE-------EEEEEeecc-cccccceeeEEEcCCCCEEEEe
Confidence 4999999999999998 899999999999999987542100 111122222 344567888999999997777
Q ss_pred ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe----
Q 021160 110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK---- 185 (316)
Q Consensus 110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~---- 185 (316)
+..|..++|..... ..........||... |.+++| .|.|.+|++.+.|.+-|+|-.-..+
T Consensus 335 g~~Gg~hlWkt~d~-------------~~w~~~~~iSGH~~~--V~dv~W-~psGeflLsvs~DQTTRlFa~wg~q~~wH 398 (764)
T KOG1063|consen 335 GRTGGFHLWKTKDK-------------TFWTQEPVISGHVDG--VKDVDW-DPSGEFLLSVSLDQTTRLFARWGRQQEWH 398 (764)
T ss_pred cccCcEEEEeccCc-------------cceeecccccccccc--ceeeee-cCCCCEEEEeccccceeeeccccccccee
Confidence 78999999983321 011233456789877 999999 9999999999999998887543000
Q ss_pred -------------eE------------------E----------------------------------------------
Q 021160 186 -------------LV------------------R---------------------------------------------- 188 (316)
Q Consensus 186 -------------~~------------------~---------------------------------------------- 188 (316)
++ +
T Consensus 399 EiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e 478 (764)
T KOG1063|consen 399 EIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGE 478 (764)
T ss_pred eecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccc
Confidence 00 0
Q ss_pred -----------------------------------------EeecCccceEEEEEcCCCCeEEEEeCCC-----cEEEec
Q 021160 189 -----------------------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEK-----TVKLWA 222 (316)
Q Consensus 189 -----------------------------------------~~~~~~~~v~~~~~~p~~~~l~s~~~d~-----~i~iwd 222 (316)
.+.+|.-.|.+++.+|+++++|+++... .|++|+
T Consensus 479 ~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~ 558 (764)
T KOG1063|consen 479 TNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWN 558 (764)
T ss_pred cccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEe
Confidence 3446777899999999999999998554 599999
Q ss_pred CCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC-------------cceeE-EeecccccccccC
Q 021160 223 PMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ-------------TLAYR-ERRYNAADFESDE 287 (316)
Q Consensus 223 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~-------------~~~~~-~~~~~~~~~~~~~ 287 (316)
...-. ...+.+|.-.+..+. ++++++++++.+.|.++.+|..++.. ..++. .+.|+...+++.+
T Consensus 559 t~~W~~~~~L~~HsLTVT~l~-FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaS 637 (764)
T KOG1063|consen 559 TANWLQVQELEGHSLTVTRLA-FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATAS 637 (764)
T ss_pred ccchhhhheecccceEEEEEE-ECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEec
Confidence 88766 667889999887777 99999999999999999999876532 22233 6888998899998
Q ss_pred CCCeEEEEeccCC
Q 021160 288 EEGETYLLGFSDS 300 (316)
Q Consensus 288 ~~~~v~~~~~~~~ 300 (316)
-|..|.+|...++
T Consensus 638 RDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 638 RDKKVKVWEEPDL 650 (764)
T ss_pred CCceEEEEeccCc
Confidence 8889999998877
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=3.1e-16 Score=121.60 Aligned_cols=246 Identities=9% Similarity=0.147 Sum_probs=173.7
Q ss_pred eEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEc-------cCCCeEEE
Q 021160 37 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-------NTSELLIS 109 (316)
Q Consensus 37 v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~l~s 109 (316)
...+.|+|+| ..|++-+.|..+++|++...-.......+.++.. ...+.-.....|..-.|- |+..++++
T Consensus 52 ~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~--~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 52 LKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSK--HLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hccceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCcccccc--ceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence 4578999999 8999999999999999974322111000111100 001101123445666664 34455555
Q ss_pred -ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCc---eeeeEEEecCCCcEEEEeccCCeEEEEec-cCC
Q 021160 110 -YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ---TVKGVNFFGPNDEYVMSGSDCGHLFIWKK-KGG 184 (316)
Q Consensus 110 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~l~~~~~dg~v~~wd~-~~~ 184 (316)
+.+.-|++||.-++ +....+.+..... ...+++| +|||.+|++|- ...|++||+ +.|
T Consensus 129 ssr~~PIh~wdaftG----------------~lraSy~~ydh~de~taAhsL~F-s~DGeqlfaGy-krcirvFdt~RpG 190 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTG----------------KLRASYRAYDHQDEYTAAHSLQF-SPDGEQLFAGY-KRCIRVFDTSRPG 190 (406)
T ss_pred ccccCceeeeecccc----------------ccccchhhhhhHHhhhhheeEEe-cCCCCeEeecc-cceEEEeeccCCC
Confidence 57999999999888 4555554332211 2578999 99999998764 789999998 555
Q ss_pred eeEEEee-------cCccceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEec
Q 021160 185 KLVRLMV-------GDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLT 255 (316)
Q Consensus 185 ~~~~~~~-------~~~~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 255 (316)
.-...+. +..+-+.+++|+|... .++.++.-..+-||.-.... +..+.+|...|..+. |..+++.++++.
T Consensus 191 r~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~-~~edGn~lfsGa 269 (406)
T KOG2919|consen 191 RDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ-WCEDGNKLFSGA 269 (406)
T ss_pred CCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE-eccCcCeecccc
Confidence 4332221 2356789999999776 69999998999898877766 777788999886666 888888888877
Q ss_pred C-CCeEEEEEeccc--------------CcceeEEeecccccccccCCCCeEEEEeccC-CCCCC
Q 021160 256 P-DVIMHVLRLQRR--------------QTLAYRERRYNAADFESDEEEGETYLLGFSD-SDASS 304 (316)
Q Consensus 256 ~-d~~~~~w~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~ 304 (316)
. +-.|-.||++.- ++.++++..|++..+++++.+|.|.+||..+ +++-+
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s 334 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS 334 (406)
T ss_pred cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence 5 788999999742 3455668889999999999999999999988 55433
No 174
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=6.8e-16 Score=121.68 Aligned_cols=159 Identities=16% Similarity=0.210 Sum_probs=127.5
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e--
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-- 110 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-- 110 (316)
+.+|.++.++. +.+++.-. ..|.|||+++.++++++. .. ..+...+.++++++.+.+++- +
T Consensus 87 pt~IL~VrmNr---~RLvV~Le-e~IyIydI~~MklLhTI~-----------t~-~~n~~gl~AlS~n~~n~ylAyp~s~ 150 (391)
T KOG2110|consen 87 PTSILAVRMNR---KRLVVCLE-ESIYIYDIKDMKLLHTIE-----------TT-PPNPKGLCALSPNNANCYLAYPGST 150 (391)
T ss_pred CCceEEEEEcc---ceEEEEEc-ccEEEEecccceeehhhh-----------cc-CCCccceEeeccCCCCceEEecCCC
Confidence 56788999987 34555554 449999999998544321 00 234556777777777778887 3
Q ss_pred cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCe-EEEEeccCCeeEEE
Q 021160 111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-LFIWKKKGGKLVRL 189 (316)
Q Consensus 111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-v~~wd~~~~~~~~~ 189 (316)
..|.|.+||+.+- +++..+..|... +.+++| +++|.+||++++.|+ ||++.+.+|+.+..
T Consensus 151 t~GdV~l~d~~nl----------------~~v~~I~aH~~~--lAalaf-s~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 151 TSGDVVLFDTINL----------------QPVNTINAHKGP--LAALAF-SPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred CCceEEEEEcccc----------------eeeeEEEecCCc--eeEEEE-CCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 4899999999887 788889999977 999999 999999999999997 68999999999998
Q ss_pred eecC--ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 190 MVGD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 190 ~~~~--~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
|... ...|.+++|+|++++|++.|..++|.|+.+....
T Consensus 212 FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 8643 3578999999999999999999999999987654
No 175
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.75 E-value=2.2e-17 Score=131.38 Aligned_cols=182 Identities=15% Similarity=0.227 Sum_probs=140.9
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 112 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 112 (316)
..+|.++.|.+...+.+++|+.|..|++|-+....-. ...........+..|...|+++.|+|+|++|+++ .+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~------~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~ 86 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG------GGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG 86 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCC------CCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence 4589999999988569999999999999999866411 1001112223347899999999999999999996 68
Q ss_pred CcEEEEEcCCCCCCCCccC-CccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160 113 ELVYLFEKNMGLGPSPLSL-SPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 191 (316)
Q Consensus 113 ~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~ 191 (316)
|.|.+|-...- .+....- .-.+.+.+...+.+.+|... +..++| +|++.++++++.|..+++||+..|+....+.
T Consensus 87 g~v~lWk~~~~-~~~~~d~e~~~~ke~w~v~k~lr~h~~d--iydL~W-s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~ 162 (434)
T KOG1009|consen 87 GEVFLWKQGDV-RIFDADTEADLNKEKWVVKKVLRGHRDD--IYDLAW-SPDSNFLVSGSVDNSVRLWDVHAGQLLAILD 162 (434)
T ss_pred ceEEEEEecCc-CCccccchhhhCccceEEEEEecccccc--hhhhhc-cCCCceeeeeeccceEEEEEeccceeEeecc
Confidence 89999987631 1110000 00111223445667788866 999999 9999999999999999999999999999999
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160 192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 225 (316)
Q Consensus 192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~ 225 (316)
.|..-++.++|.|-++++++-+.|...+++.+..
T Consensus 163 dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 163 DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred ccccccceeecchhhhhhhhhccCcccceeeeee
Confidence 9999999999999999999999998777777654
No 176
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.5e-17 Score=130.30 Aligned_cols=194 Identities=11% Similarity=0.111 Sum_probs=140.6
Q ss_pred EEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEE
Q 021160 38 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVY 116 (316)
Q Consensus 38 ~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~ 116 (316)
.+++|+++| ..+++|+.||++|+|+.+... ..... ..|...|.++.|+|||++|++ +.| ..+
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~--------------t~l~e-~~~~~eV~DL~FS~dgk~lasig~d-~~~ 210 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSML--------------TILEE-IAHHAEVKDLDFSPDGKFLASIGAD-SAR 210 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcch--------------hhhhh-HhhcCccccceeCCCCcEEEEecCC-ceE
Confidence 689999999 899999999999999977664 22222 567889999999999999999 567 999
Q ss_pred EEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC-----cEEEEeccCCeEEEEeccCCee-----
Q 021160 117 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-----EYVMSGSDCGHLFIWKKKGGKL----- 186 (316)
Q Consensus 117 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~l~~~~~dg~v~~wd~~~~~~----- 186 (316)
||+++++ ..+..............+.| +.++ ..++.....+.|+.|++...+-
T Consensus 211 VW~~~~g----------------~~~a~~t~~~k~~~~~~cRF-~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~ 273 (398)
T KOG0771|consen 211 VWSVNTG----------------AALARKTPFSKDEMFSSCRF-SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR 273 (398)
T ss_pred EEEeccC----------------chhhhcCCcccchhhhhcee-cccCCCceEEEEEecCCCCceeEEEeeeeccccccc
Confidence 9999988 34444332222122556666 6665 2333334456677766543211
Q ss_pred -EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCC-CCCcccceeeeecCCCCceeEEecCCCeEEEE
Q 021160 187 -VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPL-PDNAEKIMKANKQGREDHSRITLTPDVIMHVL 263 (316)
Q Consensus 187 -~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w 263 (316)
.+.+. ....|.+++.+++|+++|.|+.||.|-|++....+ ++-. ..|...|..+ .+.|+.+++++.+.+...++.
T Consensus 274 ~~~~~~-~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~l-tF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 274 LRKKIK-RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGL-TFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred hhhhhh-ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeE-EEcCCcCcccccccCCceeEE
Confidence 11112 23479999999999999999999999999998876 3323 3465655444 499999999999999999988
Q ss_pred Eecc
Q 021160 264 RLQR 267 (316)
Q Consensus 264 ~~~~ 267 (316)
.+.-
T Consensus 352 ~l~v 355 (398)
T KOG0771|consen 352 KLAV 355 (398)
T ss_pred EEee
Confidence 7764
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=3.9e-15 Score=128.31 Aligned_cols=220 Identities=20% Similarity=0.321 Sum_probs=163.4
Q ss_pred ceeeEEEEeeC-CCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEec-CCcEEEEeCcCCcccCCCCCCCCc
Q 021160 2 VLFNMLFDLRS-DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPV 79 (316)
Q Consensus 2 ~g~v~vwd~~~-~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~-dg~v~~wd~~~~~~~~~~~~~~~~ 79 (316)
++.+++||+.. ......+. +|...|.+++|+|++ ..+++++. |+.+++|++....
T Consensus 133 d~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------- 189 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLE-----------GHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGK----------- 189 (466)
T ss_pred CccEEEEEecCCCeEEEEEe-----------cCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCc-----------
Confidence 57899999987 33333333 378889999999999 68888875 9999999998744
Q ss_pred eecccccccCCCcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcc-eeeCCcCCceeee
Q 021160 80 DTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKG 156 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~ 156 (316)
....+ .+|...+.+++|+|++. ++++ +.|+.|++||...+ .... .+.+|... . .
T Consensus 190 ---~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~----------------~~~~~~~~~~~~~--~-~ 246 (466)
T COG2319 190 ---PLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG----------------KLLRSTLSGHSDS--V-V 246 (466)
T ss_pred ---eEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC----------------cEEeeecCCCCcc--e-e
Confidence 12222 55899999999999997 6666 57999999988755 4444 57777754 3 2
Q ss_pred EEEecCCCcEEEEeccCCeEEEEeccCCee-EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCC--
Q 021160 157 VNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP-- 232 (316)
Q Consensus 157 ~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~-- 232 (316)
..| ++++.++++++.++.+++|+...... +..+..|...+.++.|+|++..+++++.|+.+++|+..... .....
T Consensus 247 ~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 325 (466)
T COG2319 247 SSF-SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325 (466)
T ss_pred EeE-CCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeec
Confidence 256 88888999999999999999986654 44446788999999999988888888889889999888765 22222
Q ss_pred CCcccceeeeecCCCCceeE-EecCCCeEEEEEecccC
Q 021160 233 DNAEKIMKANKQGREDHSRI-TLTPDVIMHVLRLQRRQ 269 (316)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~-s~~~d~~~~~w~~~~~~ 269 (316)
.|...+..... .+++..++ .+..|+.+.+|++....
T Consensus 326 ~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 326 GHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred ccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCc
Confidence 45555555554 43323444 44678899999988765
No 178
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=1.8e-16 Score=119.51 Aligned_cols=242 Identities=12% Similarity=0.149 Sum_probs=165.8
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCC---------
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSP--------- 72 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~--------- 72 (316)
.|.|++|++.+.+....+... |...|+.+..-|++ .+.+-+.|+.+.+|++.-......
T Consensus 34 ~G~V~~w~lqt~r~~~~~r~~----------g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslg 101 (323)
T KOG0322|consen 34 VGIVKMWVLQTERDLPLIRLF----------GRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLG 101 (323)
T ss_pred cceEEEEEeecCccchhhhhh----------ccceeeceeecCCc--chhhcCCCceEEEEEccCcceEEEeeeeccccc
Confidence 589999999999887777754 56789999999864 688889999999999976332110
Q ss_pred -----C-CCCCCce-----------------------ecccccccCCCcccEEEEEEccC-CC--eEEEe-cCCcEEEEE
Q 021160 73 -----I-SSDTPVD-----------------------TFCPRHLIGKNNIHITGLAYSNT-SE--LLISY-NDELVYLFE 119 (316)
Q Consensus 73 -----~-~~~~~~~-----------------------~~~~~~~~~~~~~~i~~~~~~~~-~~--~l~s~-~d~~i~iwd 119 (316)
+ ..+.+.. ......-..+..+.+.+..+..+ +. ++++| .+|.+.+||
T Consensus 102 FCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd 181 (323)
T KOG0322|consen 102 FCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWD 181 (323)
T ss_pred cccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEE
Confidence 0 0000000 00000001123456777775443 33 44445 699999999
Q ss_pred cCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC--CeeE--EEeecCcc
Q 021160 120 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG--GKLV--RLMVGDRH 195 (316)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~--~~~~--~~~~~~~~ 195 (316)
+..+...... ....+.......|..+ +.++.| .+.-..=++|+.+..+..|+++. +.+. ..+.....
T Consensus 182 ~S~~~~~~~~------~~~~kv~~~~ash~qp--vlsldy-as~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp 252 (323)
T KOG0322|consen 182 LSTGDKIIQL------PQSSKVESPNASHKQP--VLSLDY-ASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP 252 (323)
T ss_pred ccCCceeecc------ccccccccchhhccCc--ceeeee-chhhcCCcCCCccccceeeeeccccCcccccceEEecCC
Confidence 9886211100 1111233445566655 999998 55545556777777888888763 3221 12222345
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160 196 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 265 (316)
Q Consensus 196 ~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~ 265 (316)
.|..+.+-||++++||++.|+.||||..++.. +..+..|...+..++ ++++.+++++++.|+.|.+|++
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vA-fspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVA-FSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEE-eCCCCchhhhccCCceEEeeec
Confidence 78889999999999999999999999999988 788888988876666 8999999999999999999986
No 179
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2e-16 Score=123.44 Aligned_cols=191 Identities=14% Similarity=0.223 Sum_probs=140.2
Q ss_pred cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC--CCeEEE-ecCCcEEEEEcCCCC
Q 021160 48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLIS-YNDELVYLFEKNMGL 124 (316)
Q Consensus 48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s-~~d~~i~iwd~~~~~ 124 (316)
+.+|++-+.|.|++||..+++.. ..+ .++...+..++|..+ ...+.+ +.||+|++||++...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l--------------~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~ 105 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL--------------EEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA 105 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh--------------hee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch
Confidence 56899999999999999998632 222 667777888888774 345555 589999999998762
Q ss_pred CCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc----CCeEEEEeccCCee-EEEe-ecCccceE
Q 021160 125 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----CGHLFIWKKKGGKL-VRLM-VGDRHVVN 198 (316)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~v~~wd~~~~~~-~~~~-~~~~~~v~ 198 (316)
......+..+.. ....+++. .-.++.+++|++ +-.|.+||++..+. +..+ ..|...|+
T Consensus 106 --------------e~a~~~~~~~~~-~~f~~ld~-nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT 169 (376)
T KOG1188|consen 106 --------------ESARISWTQQSG-TPFICLDL-NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVT 169 (376)
T ss_pred --------------hhhheeccCCCC-CcceEeec-cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcce
Confidence 022333444441 23666665 557788888865 66799999997765 5554 57999999
Q ss_pred EEEEcCCCC-eEEEEeCCCcEEEecCCCCC----CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160 199 QLEPHPHIP-MFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 269 (316)
Q Consensus 199 ~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~ 269 (316)
+++|+|..+ +|++||.||.|.+||+.... +...-.+...|..+.|.++.-..+.+.+......+|+++.+.
T Consensus 170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 999999765 59999999999999997653 333334566676777666654568899999999999998764
No 180
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.74 E-value=1.3e-16 Score=131.33 Aligned_cols=170 Identities=18% Similarity=0.251 Sum_probs=126.5
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccC-----CCCCC-
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS-----PISSD- 76 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~-----~~~~~- 76 (316)
|.|++.|....+..+++...... .+..|+++.|-|.+..+|+++-.+|.+.+||..-..-.. .++.+
T Consensus 195 Gqvq~idp~~~~~sklfne~r~i-------~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~ 267 (636)
T KOG2394|consen 195 GQVQLIDPINFEVSKLFNEERLI-------NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGD 267 (636)
T ss_pred CceEEecchhhHHHHhhhhcccc-------cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCC
Confidence 66777776653333333322221 246899999999887899999999999999873211000 00000
Q ss_pred -------------CCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCc
Q 021160 77 -------------TPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEP 142 (316)
Q Consensus 77 -------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 142 (316)
.|+..+ ..-.+.|...+|+|||++||+ +.||.++|||..+. +++
T Consensus 268 ~f~i~t~ksk~~rNPv~~w------~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~----------------eLl 325 (636)
T KOG2394|consen 268 QFAILTSKSKKTRNPVARW------HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ----------------ELL 325 (636)
T ss_pred eeEEeeeeccccCCcccee------EeccccccceeEcCCCceEEEEecCceEEEeeccHH----------------HHH
Confidence 111111 112457899999999999999 68999999999887 566
Q ss_pred ceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcC
Q 021160 143 QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP 204 (316)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p 204 (316)
-.++..-.. ..|++| +|||++|++|++|--|.+|.+...+.+..-.+|++.|..++|.|
T Consensus 326 g~mkSYFGG--LLCvcW-SPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 326 GVMKSYFGG--LLCVCW-SPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHHhhccc--eEEEEE-cCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 666666655 999999 99999999999999999999999999999999999999999987
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=7.9e-16 Score=132.67 Aligned_cols=241 Identities=15% Similarity=0.124 Sum_probs=164.9
Q ss_pred CceeeEEEEeeCCCcc--eEEEeccccccccCCCCccceEEEEECCCCC-cEEEEEecCCcEEEEeCcCCcccCCCCCCC
Q 021160 1 MVLFNMLFDLRSDSAT--RLFYCSSFSENSKQPMNSIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDT 77 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~--~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~ 77 (316)
+.|+|.+||++..... ..+.... ..|..+|+.+.|..+.. .-|++++.||.|..|+++.-..
T Consensus 263 y~GqV~lWD~~~~~~~~~s~ls~~~-------~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~-------- 327 (555)
T KOG1587|consen 263 YNGQVVLWDLRKGSDTPPSGLSALE-------VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSL-------- 327 (555)
T ss_pred cCceEEEEEccCCCCCCCccccccc-------ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecccccc--------
Confidence 3699999999987653 2233332 34999999999976431 3589999999999998875432
Q ss_pred Cceeccccccc-----CCCcccEEEEEEccCC--CeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC
Q 021160 78 PVDTFCPRHLI-----GKNNIHITGLAYSNTS--ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN 150 (316)
Q Consensus 78 ~~~~~~~~~~~-----~~~~~~i~~~~~~~~~--~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (316)
|.......... ..-...+++++|.+.. ++++++.+|.|..-+-........ ...+....+..|..
T Consensus 328 P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~--------~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 328 PVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE--------VSYKGHSTFITHIG 399 (555)
T ss_pred chhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc--------ccccccccccccCc
Confidence 11111111110 1224568899998865 377777899988744332210000 00022334555665
Q ss_pred CceeeeEEEecCCCcEEEEeccCCeEEEEecc-CCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCC-
Q 021160 151 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD- 227 (316)
Q Consensus 151 ~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~-~~~~~~~~~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~- 227 (316)
. |..+.+ +|=+..++..+.|.+++||.-. ...++..+..+...+++++|||..+. |+++..||.|.+||+....
T Consensus 400 ~--v~~v~~-nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~ 476 (555)
T KOG1587|consen 400 P--VYAVSR-NPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE 476 (555)
T ss_pred c--eEeeec-CCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc
Confidence 5 999998 6655544444449999999987 66777777778888999999998876 8888899999999997654
Q ss_pred --CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 228 --FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 228 --~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
..+..-. ..++....++..+..++.|...|.++++++...
T Consensus 477 ~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 477 EPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred CCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 3333323 556667768888999999999999999998643
No 182
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.7e-16 Score=129.99 Aligned_cols=170 Identities=17% Similarity=0.223 Sum_probs=128.1
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC--CeEE
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLI 108 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~ 108 (316)
.||.+-|++++|+.+| .+|++|+.|-.+.|||.-..+ ....+..+|...|.++.|-|.. ++++
T Consensus 47 ~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~K--------------llhsI~TgHtaNIFsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYK--------------LLHSISTGHTANIFSVKFVPYTNNRIVL 111 (758)
T ss_pred ccccceecceeecCCC-CEEeecCCcceEEeecchhcc--------------eeeeeecccccceeEEeeeccCCCeEEE
Confidence 4899999999999999 899999999999999998776 4555568999999999999965 3777
Q ss_pred Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC-cEEEEeccCCeEEEEeccCCee
Q 021160 109 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKL 186 (316)
Q Consensus 109 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~~wd~~~~~~ 186 (316)
++ .|..|+++|+...... ..+-........+..|... |..++- .|++ ..+.++++||+++-+|++....
T Consensus 112 sgAgDk~i~lfdl~~~~~~------~~d~~~~~~~~~~~cht~r--VKria~-~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 112 SGAGDKLIKLFDLDSSKEG------GMDHGMEETTRCWSCHTDR--VKRIAT-APNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred eccCcceEEEEeccccccc------ccccCccchhhhhhhhhhh--hhheec-CCCCCceEEEecCCcceeeecccCCcc
Confidence 75 7999999999852100 0000001345566777765 888887 6666 7899999999999999986332
Q ss_pred EEE-------e---ecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCC
Q 021160 187 VRL-------M---VGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPM 224 (316)
Q Consensus 187 ~~~-------~---~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~ 224 (316)
... + ...--...++.++|..++ ||.|+.|-..++||.+
T Consensus 183 c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 183 CNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred CCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 111 1 111124678999998765 8999999999999954
No 183
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.70 E-value=1.2e-14 Score=125.34 Aligned_cols=222 Identities=18% Similarity=0.320 Sum_probs=165.7
Q ss_pred ceeeEEEEeeCCC-cceEEEeccccccccCCCCccceEEEEE-CCCCCcEEEEEec-CCcEEEEeCcC-CcccCCCCCCC
Q 021160 2 VLFNMLFDLRSDS-ATRLFYCSSFSENSKQPMNSIRLNAIVI-DPRNPNYFAVGGS-DEYARVYDIRK-CHWYSPISSDT 77 (316)
Q Consensus 2 ~g~v~vwd~~~~~-~~~~~~~~~~~~~~~~~gh~~~v~~~~~-~~~~~~~l~~g~~-dg~v~~wd~~~-~~~~~~~~~~~ 77 (316)
++.+.+|+..... ....+... +...+..+.+ ++++..+++..+. |+.+.+|+... ..
T Consensus 86 d~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------- 146 (466)
T COG2319 86 DGTIKLWDLDNGEKLIKSLEGL----------HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK--------- 146 (466)
T ss_pred CCcEEEEEcCCCceeEEEEecc----------CCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe---------
Confidence 6789999998775 33333321 1125666676 7877325555444 99999999986 32
Q ss_pred CceecccccccCCCcccEEEEEEccCCCeEEEe-c-CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee
Q 021160 78 PVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK 155 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 155 (316)
.......|...|..++|+|++..++++ . |+.+++|+.... .....+.+|... +.
T Consensus 147 ------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~--v~ 202 (466)
T COG2319 147 ------LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG----------------KPLSTLAGHTDP--VS 202 (466)
T ss_pred ------EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC----------------ceEEeeccCCCc--eE
Confidence 222226788899999999999877764 3 999999999875 577778888766 99
Q ss_pred eEEEecCCCc-EEEEeccCCeEEEEeccCCeeEE-EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC--CCC
Q 021160 156 GVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF--PPL 231 (316)
Q Consensus 156 ~~~~~~~~~~-~l~~~~~dg~v~~wd~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~--~~~ 231 (316)
+++| +|++. .+++++.|+.+++||...+..+. .+..|.... -..|+|++..+++++.|+.+++|+...... ..+
T Consensus 203 ~~~~-~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 280 (466)
T COG2319 203 SLAF-SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL 280 (466)
T ss_pred EEEE-cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE
Confidence 9999 78888 55555999999999988888887 688887765 348999998888999999999999986552 233
Q ss_pred CCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160 232 PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 269 (316)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~ 269 (316)
..|...+.... +.+++..+++++.|+.+++|++....
T Consensus 281 ~~~~~~v~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 281 SGHSSSVLSVA-FSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred ecCCccEEEEE-ECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 45556665554 66677777778888889999877553
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.70 E-value=8.9e-16 Score=129.79 Aligned_cols=241 Identities=11% Similarity=0.087 Sum_probs=172.7
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 83 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~ 83 (316)
.|.++|.+.+.....+ +||+..|++++|+.+| ..+|+|+.|..|.+|+..-.
T Consensus 34 rlliyD~ndG~llqtL-----------KgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klE---------------- 85 (1081)
T KOG1538|consen 34 RLLVYDTSDGTLLQPL-----------KGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLE---------------- 85 (1081)
T ss_pred EEEEEeCCCccccccc-----------ccccceEEEEEEccCC-ceeccCCCceeEEEeccccc----------------
Confidence 4667777666554333 4689999999999999 99999999999999987622
Q ss_pred cccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC
Q 021160 84 PRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 163 (316)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 163 (316)
..+.-.|.+.|.|+.|+|-...|++++=...-+|..... .+.. +.....+.+++| ..|
T Consensus 86 -G~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK-----------------~V~K---~kss~R~~~CsW-tnD 143 (1081)
T KOG1538|consen 86 -GILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK-----------------SVSK---HKSSSRIICCSW-TND 143 (1081)
T ss_pred -ceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhh-----------------hHHh---hhhheeEEEeee-cCC
Confidence 222357899999999999999999976666778887653 2222 222234889998 999
Q ss_pred CcEEEEeccCCeEEEEeccCCeeEEEe---ecCccceEEEEEcCCC-----CeEEEEeCCCcEEEecCCCCCCCCCCCCc
Q 021160 164 DEYVMSGSDCGHLFIWKKKGGKLVRLM---VGDRHVVNQLEPHPHI-----PMFATCGIEKTVKLWAPMPTDFPPLPDNA 235 (316)
Q Consensus 164 ~~~l~~~~~dg~v~~wd~~~~~~~~~~---~~~~~~v~~~~~~p~~-----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 235 (316)
|++++.|-.+|+|.+-+-. ++....+ .+..++|.+++|+|.. ..++......++.+|.+.+..+..-+.-.
T Consensus 144 GqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~ 222 (1081)
T KOG1538|consen 144 GQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALN 222 (1081)
T ss_pred CcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCC
Confidence 9999999999999988644 4333333 2467899999999963 45888888889999998876533222111
Q ss_pred ccceeeeecCCCCceeEEecCCCeEEEEEecc--------cCcceeE-EeecccccccccCCCCeEEEEe
Q 021160 236 EKIMKANKQGREDHSRITLTPDVIMHVLRLQR--------RQTLAYR-ERRYNAADFESDEEEGETYLLG 296 (316)
Q Consensus 236 ~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~ 296 (316)
.....+ ..-+++.+++.|+.|+.++++--.. ....++. ...|.+..++.+..+|++-.+.
T Consensus 223 FdP~Ci-sYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 223 FDPCCI-SYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CCchhh-eeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 112222 2557889999999999999985322 1222333 5677788888888887775554
No 185
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=5.2e-15 Score=117.80 Aligned_cols=245 Identities=12% Similarity=0.131 Sum_probs=169.9
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 110 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 110 (316)
+|.+-|+++.|+.++ ++|++|+.|..+++|+++..-... .+.|+... ...|...|.|++|...++++.++
T Consensus 54 ~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k---~~KPI~~~-----~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 54 EHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRK---TPKPIGVM-----EHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred hhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhc---CCCCceec-----cCccccceEEEEEccCCeeEecCC
Confidence 799999999999998 899999999999999997432111 12222221 13466899999999988888886
Q ss_pred cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe-eEEE
Q 021160 111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRL 189 (316)
Q Consensus 111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~-~~~~ 189 (316)
.+++|.+.|+++. +.+..+....+...|+.+.. +|..+.+++.+.++.|.+||.+..+ .+..
T Consensus 125 ~~~~VI~HDiEt~----------------qsi~V~~~~~~~~~VY~m~~-~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~ 187 (609)
T KOG4227|consen 125 RWGTVIKHDIETK----------------QSIYVANENNNRGDVYHMDQ-HPTDNTLIVVTRAKLVSFIDNRDRQNPISL 187 (609)
T ss_pred CcceeEeeecccc----------------eeeeeecccCcccceeeccc-CCCCceEEEEecCceEEEEeccCCCCCCce
Confidence 7999999999987 45555554443345999998 8889999999999999999987654 2222
Q ss_pred e--ecCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCCC--------CCCCCCcccceeeeecCCCCceeEEecCCC
Q 021160 190 M--VGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF--------PPLPDNAEKIMKANKQGREDHSRITLTPDV 258 (316)
Q Consensus 190 ~--~~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~ 258 (316)
+ ........++.|+|..+. |++++..+-+-+||.+.... ..++.....-+... |++.+..+++.-...
T Consensus 188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~-~~~~G~Q~msiRR~~ 266 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL-WSPSGNQFMSIRRGK 266 (609)
T ss_pred eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhee-eCCCCCeehhhhccC
Confidence 1 223456788999998765 78888899999999986541 12222122223444 677777777766665
Q ss_pred eEEEEEecccCcc---------eeE--------EeecccccccccCCCCeEEEEeccCCCCCC
Q 021160 259 IMHVLRLQRRQTL---------AYR--------ERRYNAADFESDEEEGETYLLGFSDSDASS 304 (316)
Q Consensus 259 ~~~~w~~~~~~~~---------~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 304 (316)
.-.++|+-..... .|+ ++.. ...++++.++=-+|+|.+....++-
T Consensus 267 ~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~-D~~v~tGSD~~~i~~WklP~~~ds~ 328 (609)
T KOG4227|consen 267 CPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID-DYTVATGSDHWGIHIWKLPRANDSY 328 (609)
T ss_pred CCEEeeeecccceeEeccCCCCcceeeeeeeeeeeec-ceeeeccCcccceEEEecCCCcccc
Confidence 5555555442222 121 2322 3347777777779999987766654
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=2e-14 Score=113.47 Aligned_cols=193 Identities=10% Similarity=0.171 Sum_probs=144.4
Q ss_pred ceEEEEECCCCCcEEEEEecC--CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160 36 RLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 113 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g~~d--g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 113 (316)
.|-.+-|+. .++|..+.+ +.+++++++.+..+ |.... ..+|.++.++.+ .|+..-..
T Consensus 48 ~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I------------Ce~~f----pt~IL~VrmNr~--RLvV~Lee 106 (391)
T KOG2110|consen 48 SIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI------------CEIFF----PTSILAVRMNRK--RLVVCLEE 106 (391)
T ss_pred EEEEeeccc---ceeEEEecCCCceEEEEEcccCceE------------EEEec----CCceEEEEEccc--eEEEEEcc
Confidence 455666765 345555433 45888988876532 33222 457888888754 56665556
Q ss_pred cEEEEEcCCCCCCCCccCCccccccCCCcceeeCC-cCCceeeeEEEecCCCcEEEEec--cCCeEEEEeccCCeeEEEe
Q 021160 114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLM 190 (316)
Q Consensus 114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~--~dg~v~~wd~~~~~~~~~~ 190 (316)
.|+|||+... +.++++..- .++..+..+++ ++.+.+++--+ ..|.|.+||..+-+.+..+
T Consensus 107 ~IyIydI~~M----------------klLhTI~t~~~n~~gl~AlS~-n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I 169 (391)
T KOG2110|consen 107 SIYIYDIKDM----------------KLLHTIETTPPNPKGLCALSP-NNANCYLAYPGSTTSGDVVLFDTINLQPVNTI 169 (391)
T ss_pred cEEEEecccc----------------eeehhhhccCCCccceEeecc-CCCCceEEecCCCCCceEEEEEcccceeeeEE
Confidence 6999999988 677777654 34333666665 55666777543 4789999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCc-EEEecCCCCC-CCCCCCC--cccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160 191 VGDRHVVNQLEPHPHIPMFATCGIEKT-VKLWAPMPTD-FPPLPDN--AEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 266 (316)
Q Consensus 191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~-i~iwd~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~ 266 (316)
..|.+.+.+++|+|+|.+|||+|+.|+ |||+.+..++ +.+++-. ...+++++ +++++.++.+.+..++|+++.+.
T Consensus 170 ~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~-Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 170 NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLS-FSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEE-ECCCCCeEEEecCCCeEEEEEec
Confidence 999999999999999999999999997 6999998887 5555532 33455666 89999999999999999999987
Q ss_pred c
Q 021160 267 R 267 (316)
Q Consensus 267 ~ 267 (316)
+
T Consensus 249 ~ 249 (391)
T KOG2110|consen 249 K 249 (391)
T ss_pred c
Confidence 5
No 187
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=8.8e-15 Score=112.04 Aligned_cols=214 Identities=11% Similarity=0.134 Sum_probs=151.9
Q ss_pred CCccceEEEEECCCC----CcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-Ce
Q 021160 32 MNSIRLNAIVIDPRN----PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-EL 106 (316)
Q Consensus 32 gh~~~v~~~~~~~~~----~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 106 (316)
.|..+++.+.|.|+. +.+||+.+ ..+|+|.+...+... ++ +..........+..++++..|+.-. ++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~-----~~-~~~L~~~kns~~~aPlTSFDWne~dp~~ 165 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRV-----EL-QSVLNNNKNSEFCAPLTSFDWNEVDPNL 165 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCce-----eh-hhhhccCcccccCCcccccccccCCcce
Confidence 389999999999975 24566543 579999987432000 00 0000111113456789999998865 46
Q ss_pred EEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe
Q 021160 107 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 185 (316)
Q Consensus 107 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~ 185 (316)
+.++ -|-+..|||++++. .+.....+-.|..+ |..++|.-..-+.+++.+.||.+++||++..+
T Consensus 166 igtSSiDTTCTiWdie~~~-------------~~~vkTQLIAHDKE--V~DIaf~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGV-------------SGTVKTQLIAHDKE--VYDIAFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred eEeecccCeEEEEEEeecc-------------ccceeeEEEecCcc--eeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence 6554 59999999999861 00123445568755 99999933234678999999999999998754
Q ss_pred eEEEe---ecCccceEEEEEcCCCC-eEEEEeCC-CcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCC
Q 021160 186 LVRLM---VGDRHVVNQLEPHPHIP-MFATCGIE-KTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDV 258 (316)
Q Consensus 186 ~~~~~---~~~~~~v~~~~~~p~~~-~l~s~~~d-~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~ 258 (316)
.-..+ .....+...++|+++.. ++|+-..| ..|.|-|++... +.++.+|...+-.++|.+.....+.+++.|.
T Consensus 231 HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~ 310 (364)
T KOG0290|consen 231 HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC 310 (364)
T ss_pred cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc
Confidence 33322 23245788899998765 47776655 479999998776 7889999999988886666788999999999
Q ss_pred eEEEEEeccc
Q 021160 259 IMHVLRLQRR 268 (316)
Q Consensus 259 ~~~~w~~~~~ 268 (316)
..-+||++.-
T Consensus 311 qaliWDl~q~ 320 (364)
T KOG0290|consen 311 QALIWDLQQM 320 (364)
T ss_pred eEEEEecccc
Confidence 9999999864
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.68 E-value=1.7e-15 Score=125.03 Aligned_cols=183 Identities=11% Similarity=0.155 Sum_probs=143.9
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 111 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 111 (316)
.|.+.+.+-.|+|+| .-|+++++||.|++|.-... .+....-...+|.|++|.|+.+-++.+.
T Consensus 102 AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsGM----------------LRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 102 AHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSGM----------------LRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred hhhhhhhhcccCCCC-ceeeeecCCceEEEEeccch----------------HHHHHhhcCceeEEEEECCCCCceEEec
Confidence 689999999999999 89999999999999986532 1111133467899999999998777777
Q ss_pred CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160 112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 191 (316)
Q Consensus 112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~ 191 (316)
.+.+.|=.+... ..+-.++.|..- |.++.| ++..+++++|++|-..++||.. |+.+..-.
T Consensus 165 g~h~~IKpL~~n----------------~k~i~WkAHDGi--iL~~~W-~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~ 224 (737)
T KOG1524|consen 165 GGHISIKPLAAN----------------SKIIRWRAHDGL--VLSLSW-STQSNIIASGGEDFRFKIWDAQ-GANLFTSA 224 (737)
T ss_pred CCeEEEeecccc----------------cceeEEeccCcE--EEEeec-CccccceeecCCceeEEeeccc-CcccccCC
Confidence 778887776654 355567889866 999999 9999999999999999999987 77777777
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160 192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 264 (316)
Q Consensus 192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~ 264 (316)
.|.-+|++++|.|+ +.++.+|. .+.|+=.+ ....++.+. |++|+..+..++..|.+.+--
T Consensus 225 ~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p----------~~GSifnls-WS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE-KDYLLWSY-NTARFSSP----------RVGSIFNLS-WSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred hhccceeeeeeccc-cceeeeee-eeeeecCC----------CccceEEEE-EcCCCceeeccccCceEEEee
Confidence 89999999999999 66777763 45563222 334566776 888888888888888766543
No 189
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.68 E-value=8e-15 Score=111.95 Aligned_cols=153 Identities=14% Similarity=0.213 Sum_probs=107.8
Q ss_pred EEEEECCCCCcEEEE-Ee---------cCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeE
Q 021160 38 NAIVIDPRNPNYFAV-GG---------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 107 (316)
Q Consensus 38 ~~~~~~~~~~~~l~~-g~---------~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 107 (316)
..+.|+|+| .+|++ .. .-+...+|.++... .++ ..+.....++|.+++|+|+|+.+
T Consensus 9 ~~~~W~~~G-~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~--------~~~-----~~i~l~~~~~I~~~~WsP~g~~f 74 (194)
T PF08662_consen 9 AKLHWQPSG-DYLLVKVQTRVDKSGKSYYGEFELFYLNEKN--------IPV-----ESIELKKEGPIHDVAWSPNGNEF 74 (194)
T ss_pred EEEEecccC-CEEEEEEEEeeccCcceEEeeEEEEEEecCC--------Ccc-----ceeeccCCCceEEEEECcCCCEE
Confidence 468899999 45444 33 12446666664332 111 11112234579999999999854
Q ss_pred EE--e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc---CCeEEEEec
Q 021160 108 IS--Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIWKK 181 (316)
Q Consensus 108 ~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~v~~wd~ 181 (316)
+. + .+..|.+||++. +.+..+.. .. +..+.| +|+|+++++++. .|.|.+||.
T Consensus 75 avi~g~~~~~v~lyd~~~-----------------~~i~~~~~--~~--~n~i~w-sP~G~~l~~~g~~n~~G~l~~wd~ 132 (194)
T PF08662_consen 75 AVIYGSMPAKVTLYDVKG-----------------KKIFSFGT--QP--RNTISW-SPDGRFLVLAGFGNLNGDLEFWDV 132 (194)
T ss_pred EEEEccCCcccEEEcCcc-----------------cEeEeecC--CC--ceEEEE-CCCCCEEEEEEccCCCcEEEEEEC
Confidence 43 3 477999999963 35555542 22 778998 999999999864 477999999
Q ss_pred cCCeeEEEeecCccceEEEEEcCCCCeEEEEeC------CCcEEEecCCCCCC
Q 021160 182 KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDF 228 (316)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~------d~~i~iwd~~~~~~ 228 (316)
++.+.+.... | ..++.++|+|+|++|+++.. |..++||+..+..+
T Consensus 133 ~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 133 RKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred CCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 9888887765 3 34789999999999988864 78899999876654
No 190
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.9e-14 Score=107.62 Aligned_cols=200 Identities=14% Similarity=0.228 Sum_probs=135.1
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec-ccccccCCCcccEEEEEEccCCC-eEEE
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF-CPRHLIGKNNIHITGLAYSNTSE-LLIS 109 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~-~l~s 109 (316)
+|.++|+.++|+. .+|++|+. |.|+-|..+......-. .+.-.. .+...-...--.|+++...|..+ ++.+
T Consensus 60 ahdgpiy~~~f~d---~~Lls~gd-G~V~gw~W~E~~es~~~---K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A 132 (325)
T KOG0649|consen 60 AHDGPIYYLAFHD---DFLLSGGD-GLVYGWEWNEEEESLAT---KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA 132 (325)
T ss_pred ccCCCeeeeeeeh---hheeeccC-ceEEEeeehhhhhhccc---hhhhhhcCccccCcccCCccceeEeccCCCcEEEe
Confidence 5899999999993 46676654 99999987643210000 000000 00000001123588898898765 6666
Q ss_pred ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160 110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189 (316)
Q Consensus 110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~ 189 (316)
+.|+.++-||++++ +..+.+++|++. +.++.- -.....+++|++||++++||.++++.+..
T Consensus 133 gGD~~~y~~dlE~G----------------~i~r~~rGHtDY--vH~vv~-R~~~~qilsG~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDG----------------RIQREYRGHTDY--VHSVVG-RNANGQILSGAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred cCCeEEEEEEecCC----------------EEEEEEcCCcce--eeeeee-cccCcceeecCCCccEEEEeccccceeEE
Confidence 79999999999999 788999999976 999986 45566789999999999999999999887
Q ss_pred eecCc----------cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC---CCCCCCCcccceeeeecCCCCceeEEecC
Q 021160 190 MVGDR----------HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGREDHSRITLTP 256 (316)
Q Consensus 190 ~~~~~----------~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 256 (316)
+.... ..|-+++- +..++++|+ -..+.+|.++..+ +..++.+...+ . .....+++++.
T Consensus 194 ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v---~---F~~d~vl~~G~ 264 (325)
T KOG0649|consen 194 IEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLV---D---FVDDCVLIGGE 264 (325)
T ss_pred eccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEecccceeEe---e---eecceEEEecc
Confidence 75321 23555554 455777765 5689999999876 33344443332 1 12346777777
Q ss_pred CCeEEEEEec
Q 021160 257 DVIMHVLRLQ 266 (316)
Q Consensus 257 d~~~~~w~~~ 266 (316)
...+.-|.+.
T Consensus 265 g~~v~~~~l~ 274 (325)
T KOG0649|consen 265 GNHVQSYTLN 274 (325)
T ss_pred ccceeeeeec
Confidence 7777777654
No 191
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=6e-15 Score=121.72 Aligned_cols=185 Identities=15% Similarity=0.178 Sum_probs=131.4
Q ss_pred CCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC--eEEEecCCcEEEEEc
Q 021160 43 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISYNDELVYLFEK 120 (316)
Q Consensus 43 ~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~d~~i~iwd~ 120 (316)
.|.+ --+++|-.-|.|.+.|....+..... -... .-....++|+.|-|.+. ++++-.+|.+++||.
T Consensus 182 ~~~g-~dllIGf~tGqvq~idp~~~~~sklf----------ne~r-~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~ 249 (636)
T KOG2394|consen 182 TPKG-LDLLIGFTTGQVQLIDPINFEVSKLF----------NEER-LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDK 249 (636)
T ss_pred CCCC-cceEEeeccCceEEecchhhHHHHhh----------hhcc-cccccceEEEEEEeCCCceEEEEEecCceEEeec
Confidence 3445 67888888899999987753321100 0000 11247899999999664 666668999999988
Q ss_pred CCCCCCCCccCC---ccc---------cccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE
Q 021160 121 NMGLGPSPLSLS---PED---------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 188 (316)
Q Consensus 121 ~~~~~~~~~~~~---~~~---------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~ 188 (316)
............ ..+ ..+..++..+.--.. .|...+| +|||++||+.+.||.++|||..+.+++.
T Consensus 250 ~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g--~in~f~F-S~DG~~LA~VSqDGfLRvF~fdt~eLlg 326 (636)
T KOG2394|consen 250 EIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEG--SINEFAF-SPDGKYLATVSQDGFLRIFDFDTQELLG 326 (636)
T ss_pred cccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccc--cccceeE-cCCCceEEEEecCceEEEeeccHHHHHH
Confidence 543221111111 110 111123333322222 3889999 8999999999999999999999988888
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeee
Q 021160 189 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKAN 242 (316)
Q Consensus 189 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~ 242 (316)
.++..-+...|++|+|||++|++|++|--|.||.+...+ +..-.+|..+|..++
T Consensus 327 ~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~Va 381 (636)
T KOG2394|consen 327 VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVA 381 (636)
T ss_pred HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEe
Confidence 888777899999999999999999999999999999888 666678888876555
No 192
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.2e-14 Score=125.34 Aligned_cols=209 Identities=13% Similarity=0.067 Sum_probs=135.3
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecC---CcEEEEeCcCCcccCCCCCCCCc
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPV 79 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~d---g~v~~wd~~~~~~~~~~~~~~~~ 79 (316)
..|.+||...... +.+.. |...+.+.+|+|+| +.|+..+.+ ..|++||+.+++..
T Consensus 184 ~~i~i~d~dg~~~-~~lt~-----------~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~--------- 241 (429)
T PRK01742 184 YEVRVADYDGFNQ-FIVNR-----------SSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARK--------- 241 (429)
T ss_pred EEEEEECCCCCCc-eEecc-----------CCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceE---------
Confidence 4678888765443 22221 46679999999999 777776543 46999999877511
Q ss_pred eecccccccCCCcccEEEEEEccCCCeEEE-e-cCCcEEEE--EcCCCCCCCCccCCccccccCCCcceeeCCcCCceee
Q 021160 80 DTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLF--EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK 155 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 155 (316)
..... .+| ...++|+|+|+.|+. . .++.+.|| |+.++ ....+..+... +.
T Consensus 242 ---~l~~~-~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~ 295 (429)
T PRK01742 242 ---VVASF-RGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG-----------------TPSQLTSGAGN--NT 295 (429)
T ss_pred ---EEecC-CCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCC-----------------CeEeeccCCCC--cC
Confidence 11111 222 336899999996665 3 47765555 55544 33444444433 77
Q ss_pred eEEEecCCCcEEEEec-cCCeEEEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCC
Q 021160 156 GVNFFGPNDEYVMSGS-DCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD 233 (316)
Q Consensus 156 ~~~~~~~~~~~l~~~~-~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 233 (316)
...| +|+|+.|+..+ .++...+|++... .....+ .+.. ...+|+|+++.|+..+.++ +.+||+.++....+..
T Consensus 296 ~~~w-SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~ 370 (429)
T PRK01742 296 EPSW-SPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS 370 (429)
T ss_pred CEEE-CCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC
Confidence 8898 99999877655 5677888876532 222233 3433 4578999999988887655 5669998876333321
Q ss_pred CcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160 234 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 266 (316)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~ 266 (316)
.. .. ....|+++++.++.++.++...+|.+.
T Consensus 371 ~~-~~-~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 371 TF-LD-ESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CC-CC-CCceECCCCCEEEEEEcCCCceEEEEE
Confidence 11 11 223378899999999989888888764
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=1.5e-13 Score=115.09 Aligned_cols=255 Identities=11% Similarity=0.101 Sum_probs=150.7
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEE-ecCCcEEEEeCcC-CcccCCCCCCCCc
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG-GSDEYARVYDIRK-CHWYSPISSDTPV 79 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g-~~dg~v~~wd~~~-~~~~~~~~~~~~~ 79 (316)
+|.|.+||+.+......+.. .+ +.+....++++|++ ++|+++ ..++.|.+|++.. +++.
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~--~~-------~~~~~~~l~~spd~-~~lyv~~~~~~~i~~~~~~~~g~l~--------- 71 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQV--VD-------VPGQVQPMVISPDK-RHLYVGVRPEFRVLSYRIADDGALT--------- 71 (330)
T ss_pred CCCEEEEEECCCCceeeeeE--Ee-------cCCCCccEEECCCC-CEEEEEECCCCcEEEEEECCCCceE---------
Confidence 57899999964322112111 11 23456789999998 666555 4688999999973 3210
Q ss_pred eecccccccCCCcccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160 80 DTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 157 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 157 (316)
..... ........++++|++++++++ .++.|.+|+++..... ......+.+.. ...++
T Consensus 72 ---~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~------------~~~~~~~~~~~---~~~~~ 131 (330)
T PRK11028 72 ---FAAES--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIP------------VAPIQIIEGLE---GCHSA 131 (330)
T ss_pred ---Eeeee--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCC------------CCceeeccCCC---cccEe
Confidence 00111 112245689999999966664 4899999999642100 01111222211 25677
Q ss_pred EEecCCCcEEEEe-ccCCeEEEEeccCCeeEE-------EeecCccceEEEEEcCCCCeEEEEeC-CCcEEEecCCC--C
Q 021160 158 NFFGPNDEYVMSG-SDCGHLFIWKKKGGKLVR-------LMVGDRHVVNQLEPHPHIPMFATCGI-EKTVKLWAPMP--T 226 (316)
Q Consensus 158 ~~~~~~~~~l~~~-~~dg~v~~wd~~~~~~~~-------~~~~~~~~v~~~~~~p~~~~l~s~~~-d~~i~iwd~~~--~ 226 (316)
++ +|++++++++ ..++.|.+||+.+...+. .... ......++|+|+++++++++. ++.|.+|++.. +
T Consensus 132 ~~-~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~ 209 (330)
T PRK11028 132 NI-DPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG 209 (330)
T ss_pred Ee-CCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC
Confidence 88 8999888655 457999999997633221 1111 234678999999999877765 89999999973 2
Q ss_pred CC---CC---CCCC---cccceeeeecCCCCceeEEec-CCCeEEEEEecccCc-ce------------eEEeecccccc
Q 021160 227 DF---PP---LPDN---AEKIMKANKQGREDHSRITLT-PDVIMHVLRLQRRQT-LA------------YRERRYNAADF 283 (316)
Q Consensus 227 ~~---~~---~~~~---~~~~~~~~~~~~~~~~~~s~~-~d~~~~~w~~~~~~~-~~------------~~~~~~~~~~~ 283 (316)
.+ .. ++.. ...... ..++++++++.++. .++.|.+|++..... .. ...+.+++..+
T Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~-i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l 288 (330)
T PRK11028 210 EIECVQTLDMMPADFSDTRWAAD-IHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYL 288 (330)
T ss_pred CEEEEEEEecCCCcCCCCcccee-EEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEE
Confidence 21 11 1111 111111 23567887777664 578999999864321 11 11344555555
Q ss_pred cc-cCCCCeEEEEecc
Q 021160 284 ES-DEEEGETYLLGFS 298 (316)
Q Consensus 284 ~~-~~~~~~v~~~~~~ 298 (316)
.. ...++.|.+|..+
T Consensus 289 ~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 289 IAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEccCCcEEEEEEc
Confidence 53 3346667777654
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=7.6e-15 Score=121.23 Aligned_cols=207 Identities=10% Similarity=0.098 Sum_probs=153.9
Q ss_pred cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCC
Q 021160 48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGP 126 (316)
Q Consensus 48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~ 126 (316)
..|+.++.||.+.+.+-. ++ ......+|.+.+.+-.|+|+|.-|++ |.||.|++|.-...
T Consensus 76 d~~~i~s~DGkf~il~k~-~r---------------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--- 136 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-AR---------------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--- 136 (737)
T ss_pred ceEEEEcCCceEEEeccc-ch---------------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch---
Confidence 578889999999988754 32 22223789999999999999985555 78999999986553
Q ss_pred CCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCC
Q 021160 127 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI 206 (316)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~ 206 (316)
...++.... ..|.|++| .|+.+.++-+. .+.+.+=.+.....+-..++|.+-|.++.|+|..
T Consensus 137 --------------LRStl~Q~~--~~v~c~~W-~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s 198 (737)
T KOG1524|consen 137 --------------LRSTVVQNE--ESIRCARW-APNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS 198 (737)
T ss_pred --------------HHHHHhhcC--ceeEEEEE-CCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccc
Confidence 334444334 34999999 78777665543 4567777777666667788999999999999999
Q ss_pred CeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE--Eeeccccccc
Q 021160 207 PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR--ERRYNAADFE 284 (316)
Q Consensus 207 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~--~~~~~~~~~~ 284 (316)
.++++|++|-..+|||..+..+..-..|.-++.+.+ |.++ ..++.++ -.++| +...+.-..+ .+++++..++
T Consensus 199 ~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva-~npd-~~~~v~S-~nt~R---~~~p~~GSifnlsWS~DGTQ~a 272 (737)
T KOG1524|consen 199 NIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVA-FNPE-KDYLLWS-YNTAR---FSSPRVGSIFNLSWSADGTQAT 272 (737)
T ss_pred cceeecCCceeEEeecccCcccccCChhccceeeee-eccc-cceeeee-eeeee---ecCCCccceEEEEEcCCCceee
Confidence 999999999999999998887777777888887777 6676 3444443 33344 4433322222 7899999999
Q ss_pred ccCCCCeEEEEec
Q 021160 285 SDEEEGETYLLGF 297 (316)
Q Consensus 285 ~~~~~~~v~~~~~ 297 (316)
.+...|.+++.-.
T Consensus 273 ~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 273 CGTSTGQLIVAYA 285 (737)
T ss_pred ccccCceEEEeee
Confidence 9988888876543
No 195
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=9.8e-15 Score=115.99 Aligned_cols=187 Identities=16% Similarity=0.310 Sum_probs=145.1
Q ss_pred ceeeEEEEeeCCC--cceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecC--CcEEEEeCcCCcccCCCCCCC
Q 021160 2 VLFNMLFDLRSDS--ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDT 77 (316)
Q Consensus 2 ~g~v~vwd~~~~~--~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~d--g~v~~wd~~~~~~~~~~~~~~ 77 (316)
.|.+++|....+. ..+...... ..++..+.-++..+.++|+|+.. ..+.+||++..+-+
T Consensus 124 sG~l~~~~~k~~d~hss~l~~la~----------g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi------- 186 (412)
T KOG3881|consen 124 SGNLQVRHDKSGDLHSSKLIKLAT----------GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI------- 186 (412)
T ss_pred CCcEEEEeccCCccccccceeeec----------CCceeeeccCCCCCceEecCchhcccceeeeecccceee-------
Confidence 5788999988443 222222221 23678888899888888999998 88999999866411
Q ss_pred Cceeccccccc-----CCCcccEEEEEEccC--CCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc
Q 021160 78 PVDTFCPRHLI-----GKNNIHITGLAYSNT--SELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149 (316)
Q Consensus 78 ~~~~~~~~~~~-----~~~~~~i~~~~~~~~--~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (316)
|..+.+. -.-.-+++++.|-+. ...|++ +.-+++++||.+.+. +++..|.--.
T Consensus 187 ----w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR---------------RPV~~fd~~E 247 (412)
T KOG3881|consen 187 ----WSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR---------------RPVAQFDFLE 247 (412)
T ss_pred ----eeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC---------------cceeEecccc
Confidence 1111111 112346778899887 556676 479999999998763 5666776666
Q ss_pred CCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE-eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 150 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
+. ++++.. .|+++++++|...|.+..||++.++.... +.+..+.|.++..+|..+++|++|-|..+||+|+.+.+
T Consensus 248 ~~--is~~~l-~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 248 NP--ISSTGL-TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred Cc--ceeeee-cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 55 999998 89999999999999999999999998876 78889999999999999999999999999999999865
No 196
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4.9e-13 Score=105.60 Aligned_cols=187 Identities=9% Similarity=0.102 Sum_probs=120.4
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+-.|+++|-....+ ..+... ....|+|++|-|.+...|++|.. +.|.+|.....-..... .....+
T Consensus 119 ddvVriy~ksst~p-t~Lks~----------sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~--~~~~s~ 184 (445)
T KOG2139|consen 119 DDVVRIYDKSSTCP-TKLKSV----------SQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRN--IRMMST 184 (445)
T ss_pred CcEEEEeccCCCCC-ceecch----------hhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccc--cccccc
Confidence 45688888766333 333322 24579999999988788888887 55889987633211110 000011
Q ss_pred ccccccc-CCCcccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEE
Q 021160 82 FCPRHLI-GKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN 158 (316)
Q Consensus 82 ~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 158 (316)
.+...+. .+| .+|+++.|++||..++++ .|..|.|||..++ ..+....-.. ..+.-+.
T Consensus 185 ~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg----------------~~~pL~~~gl--gg~slLk 245 (445)
T KOG2139|consen 185 HHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG----------------QKIPLIPKGL--GGFSLLK 245 (445)
T ss_pred cchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC----------------CcccccccCC--CceeeEE
Confidence 1111111 233 789999999999988885 5889999999988 2222221122 2278889
Q ss_pred EecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160 159 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 223 (316)
Q Consensus 159 ~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~ 223 (316)
| +|++.+|.+++-|+..++|...............+.|+..+|+|.|+.|+-+. .|.-++|.+
T Consensus 246 w-SPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~-sgsp~lysl 308 (445)
T KOG2139|consen 246 W-SPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC-SGSPRLYSL 308 (445)
T ss_pred E-cCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE-cCCceEEEE
Confidence 8 99999999999999999996443222222223345899999999999855443 244455543
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=8.4e-14 Score=123.57 Aligned_cols=267 Identities=9% Similarity=0.071 Sum_probs=172.7
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEEC-CCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID-PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF 82 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~-~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~ 82 (316)
.|+|||-+.++...-|...... ...|+.+.+- .++..++++|+.||.|+||+-..... ..++-|..+
T Consensus 1087 ~i~vwd~e~~~~l~~F~n~~~~--------~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~----~~~eLVTaw 1154 (1387)
T KOG1517|consen 1087 RIRVWDWEKGRLLNGFDNGAFP--------DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW----KKPELVTAW 1154 (1387)
T ss_pred eEEEEecccCceeccccCCCCC--------CCccceeeeecccchhheeeeccCceEEEeccccccc----CCceeEEee
Confidence 5789999877765555544433 5678999874 34447899999999999998543221 011222222
Q ss_pred cc-ccccCCCcccEEEEEEccCC-CeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 83 CP-RHLIGKNNIHITGLAYSNTS-ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 83 ~~-~~~~~~~~~~i~~~~~~~~~-~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
.. .....+..+.-.-+.|.... .++++|.-..|+|||.... .....+....+ ..++++.-.
T Consensus 1155 ~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E----------------~~~~diP~~s~-t~vTaLS~~ 1217 (1387)
T KOG1517|consen 1155 SSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKE----------------QVVADIPYGSS-TLVTALSAD 1217 (1387)
T ss_pred ccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccc----------------eeEeecccCCC-ccceeeccc
Confidence 11 11111111222446677654 4556667788999999876 34444433222 337777664
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCe---eEEEeecCccc--eEEEEEcCCCCe-EEEEeCCCcEEEecCCCCC-CCC--C
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGK---LVRLMVGDRHV--VNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD-FPP--L 231 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~---~~~~~~~~~~~--v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~-~~~--~ 231 (316)
...|+.+++|..||.|++||.+... .+...+.|... |..+.+-+.|-- |++|+.||.|++||++... ... +
T Consensus 1218 ~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1218 LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred ccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee
Confidence 5568999999999999999987543 45666778876 999999987765 9999999999999999843 222 2
Q ss_pred CCCc--ccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE----------------EeecccccccccCCCCeEE
Q 021160 232 PDNA--EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR----------------ERRYNAADFESDEEEGETY 293 (316)
Q Consensus 232 ~~~~--~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~v~ 293 (316)
..|. +..++....+.....+++|+. +.+++|++...+...+. .+-|-...++.+..|.+|.
T Consensus 1298 v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred eeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 2222 212344446667778889888 99999998754332221 3444445566667777777
Q ss_pred EEeccCC
Q 021160 294 LLGFSDS 300 (316)
Q Consensus 294 ~~~~~~~ 300 (316)
++.....
T Consensus 1377 iYs~~k~ 1383 (1387)
T KOG1517|consen 1377 IYSCEKP 1383 (1387)
T ss_pred EeecCCc
Confidence 7765543
No 198
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=9.5e-13 Score=102.25 Aligned_cols=179 Identities=14% Similarity=0.161 Sum_probs=126.1
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcC-CcccCCCCCCCCcee
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDT 81 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~-~~~~~~~~~~~~~~~ 81 (316)
..|.|||=...++...+.. ..+|.++.+.++ .|++.- ...|.||.... .+.+.
T Consensus 75 NkviIWDD~k~~~i~el~f------------~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~---------- 128 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSF------------NSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLH---------- 128 (346)
T ss_pred ceEEEEecccCcEEEEEEe------------ccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhhee----------
Confidence 5789999444444333332 568999999984 344443 47899999873 33111
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEE-e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 159 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (316)
+..+. ......-++.-.....+||. | .-|+|.|-|+.... ......+..|... |.|++.
T Consensus 129 -~~et~--~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~--------------~~~p~~I~AH~s~--Iacv~L 189 (346)
T KOG2111|consen 129 -VIETR--SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK--------------PNAPSIINAHDSD--IACVAL 189 (346)
T ss_pred -eeecc--cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC--------------cCCceEEEcccCc--eeEEEE
Confidence 11111 11122222222222236666 5 47999999997651 0134778899977 999999
Q ss_pred ecCCCcEEEEeccCCe-EEEEeccCCeeEEEeec--CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 160 FGPNDEYVMSGSDCGH-LFIWKKKGGKLVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~-v~~wd~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
+.+|..+|++|..|+ |+|||..+|+.+..+.. ....|.+++|+|+..+||.+|..|++.|+.++...
T Consensus 190 -n~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 190 -NLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred -cCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 899999999999997 78999999999998863 23579999999999999999999999999987643
No 199
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=5.3e-14 Score=117.16 Aligned_cols=273 Identities=14% Similarity=0.148 Sum_probs=182.0
Q ss_pred ceeeEEEEeeCCCcceEEEecc-------------ccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCc
Q 021160 2 VLFNMLFDLRSDSATRLFYCSS-------------FSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH 68 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~-------------~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~ 68 (316)
.+.|+||++...+..+.-.... ..+...+-+|+..-+.|..+|+|..++|+|...-.|++||+....
T Consensus 6 ~NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS 85 (703)
T KOG2321|consen 6 VNDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS 85 (703)
T ss_pred cCceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccce
Confidence 4578999987655432211100 001122236888899999999997778889999999999998665
Q ss_pred ccCCCCCCCCceecc--------------cccc-----cCCC-----cccEEEEEEccCC-CeEEEecCCcEEEEEcCCC
Q 021160 69 WYSPISSDTPVDTFC--------------PRHL-----IGKN-----NIHITGLAYSNTS-ELLISYNDELVYLFEKNMG 123 (316)
Q Consensus 69 ~~~~~~~~~~~~~~~--------------~~~~-----~~~~-----~~~i~~~~~~~~~-~~l~s~~d~~i~iwd~~~~ 123 (316)
+.-+-.....+..|. .+.+ ...| ...-..++++.-. .+++.+....|+-++++.+
T Consensus 86 LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG 165 (703)
T KOG2321|consen 86 LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG 165 (703)
T ss_pred eeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccc
Confidence 432211111111111 0000 0001 1123345555433 3666677788999999988
Q ss_pred CCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec------Ccc--
Q 021160 124 LGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG------DRH-- 195 (316)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~------~~~-- 195 (316)
..+..|...... ++++.. ++.+.+|++|+.+|.|-+||.+....+..+.. |.+
T Consensus 166 ----------------rfL~P~~~~~~~--lN~v~i-n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 166 ----------------RFLNPFETDSGE--LNVVSI-NEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGD 226 (703)
T ss_pred ----------------cccccccccccc--ceeeee-cCccceEEecccCceEEEecchhhhhheeeecccccCCCcccc
Confidence 677777766655 999998 88999999999999999999998776665532 333
Q ss_pred ---ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCc--ccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160 196 ---VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNA--EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 270 (316)
Q Consensus 196 ---~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~ 270 (316)
.|+++.|+.+|-.++.|..+|.+.|||+++.+......|. -++..+.|...+..-.+.......+++|+-.++..
T Consensus 227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP 306 (703)
T ss_pred ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCc
Confidence 4999999999888999999999999999998844444443 45666765555544455555678899999998877
Q ss_pred ceeEEeecccccccccCCCCeEE
Q 021160 271 LAYRERRYNAADFESDEEEGETY 293 (316)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~v~ 293 (316)
....+...+...+-.-.+.|-++
T Consensus 307 ~asiEpt~~lND~C~~p~sGm~f 329 (703)
T KOG2321|consen 307 MASIEPTSDLNDFCFVPGSGMFF 329 (703)
T ss_pred eeeccccCCcCceeeecCCceEE
Confidence 77665555555554444444443
No 200
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.5e-13 Score=107.21 Aligned_cols=207 Identities=15% Similarity=0.195 Sum_probs=139.7
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEecC
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYND 112 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~d 112 (316)
+..+..++|++.- ..+|++..|-.|++|+-.. + ++..+.......|+|++|-|.+. .|+.+--
T Consensus 98 ~~dlr~~aWhqH~-~~fava~nddvVriy~kss-t--------------~pt~Lks~sQrnvtclawRPlsaselavgCr 161 (445)
T KOG2139|consen 98 EIDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS-T--------------CPTKLKSVSQRNVTCLAWRPLSASELAVGCR 161 (445)
T ss_pred hcceeeEeechhh-hhhhhhccCcEEEEeccCC-C--------------CCceecchhhcceeEEEeccCCcceeeeeec
Confidence 3457889999976 7899999999999999876 3 34444344567899999999764 6666667
Q ss_pred CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-CCeEEEEeccCCeeEEEee
Q 021160 113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMV 191 (316)
Q Consensus 113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~~wd~~~~~~~~~~~ 191 (316)
+-|.+|......... .... .......+.+.... ...|+++.| .+||..+++++. +..|.+||..++..+....
T Consensus 162 ~gIciW~~s~tln~~---r~~~-~~s~~~~qvl~~pg-h~pVtsmqw-n~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 162 AGICIWSDSRTLNAN---RNIR-MMSTHHLQVLQDPG-HNPVTSMQW-NEDGTILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred ceeEEEEcCcccccc---cccc-cccccchhheeCCC-CceeeEEEE-cCCCCEEeecccCcceEEEEcCCCCCcccccc
Confidence 779999876431100 0000 00001222232221 145999999 899999998875 7789999999988776554
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCcee-EEecCCCeEEEE
Q 021160 192 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSR-ITLTPDVIMHVL 263 (316)
Q Consensus 192 ~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~d~~~~~w 263 (316)
-.-+.+.-+.||||+.+|..+.-|+..++|...... .....-.... ++.+.|+++++++ ++++....+.-.
T Consensus 236 ~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgr-vqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 236 KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGR-VQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCc-eeeeeecCCCCEEEEEEcCCceEEEE
Confidence 445778889999999999999999999999654432 1111112223 4666688877655 455555544433
No 201
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=1.8e-15 Score=122.61 Aligned_cols=195 Identities=14% Similarity=0.176 Sum_probs=167.2
Q ss_pred ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcE
Q 021160 36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV 115 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i 115 (316)
.-..+.++.+| ..++.|+..|.|..+|..++++..+ .. -...|..+.|-...+++|.+....+
T Consensus 131 GPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L~~E------------i~----v~Etv~Dv~~LHneq~~AVAQK~y~ 193 (545)
T KOG1272|consen 131 GPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKLHFE------------IN----VMETVRDVTFLHNEQFFAVAQKKYV 193 (545)
T ss_pred CCeeeeecCCc-cEEEecCCccceeeeecccceeeee------------ee----hhhhhhhhhhhcchHHHHhhhhceE
Confidence 34678899999 8999999999999999999885422 11 2456888999988889999999999
Q ss_pred EEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCcc
Q 021160 116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 195 (316)
Q Consensus 116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~ 195 (316)
+|||-..- .++.++.+.. +..+.| -|..-+|++++..|.++.-|+.+|+.+..+....+
T Consensus 194 yvYD~~Gt-----------------ElHClk~~~~---v~rLeF-LPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G 252 (545)
T KOG1272|consen 194 YVYDNNGT-----------------ELHCLKRHIR---VARLEF-LPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG 252 (545)
T ss_pred EEecCCCc-----------------EEeehhhcCc---hhhhcc-cchhheeeecccCCceEEEeechhhhhHHHHccCC
Confidence 99997653 5666665543 888999 78899999999999999999999999999988888
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccC
Q 021160 196 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 269 (316)
Q Consensus 196 ~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~ 269 (316)
.+..|+-+|.+..+-+|...|+|.+|.+.... +..+.-|..++..++ ..+.+++++|.+.|..++|||++.-.
T Consensus 253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siA-v~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIA-VDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred ccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEE-ECCCCcEEeecccccceeEeeecccc
Confidence 99999999999999999999999999999887 677777888886666 88999999999999999999998754
No 202
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=9.7e-14 Score=107.74 Aligned_cols=205 Identities=11% Similarity=0.178 Sum_probs=152.9
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 112 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 112 (316)
..+|+|.+|+++. ..+|++.....|.||.....+.- ...+....|...|+.+.|+|..+.|+++ .|
T Consensus 10 ~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w------------~~~htls~Hd~~vtgvdWap~snrIvtcs~d 76 (361)
T KOG1523|consen 10 LEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLW------------EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHD 76 (361)
T ss_pred cCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCc------------eeceehhhhCcceeEEeecCCCCceeEccCC
Confidence 4589999999999 89999999999999998866511 2233337899999999999999888885 69
Q ss_pred CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE----E
Q 021160 113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV----R 188 (316)
Q Consensus 113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~----~ 188 (316)
..-++|....+ .+.++...+..+... .+++.| +|.++.+++|+....|.+|-++..+-- +
T Consensus 77 rnayVw~~~~~-------------~~WkptlvLlRiNrA--At~V~W-sP~enkFAVgSgar~isVcy~E~ENdWWVsKh 140 (361)
T KOG1523|consen 77 RNAYVWTQPSG-------------GTWKPTLVLLRINRA--ATCVKW-SPKENKFAVGSGARLISVCYYEQENDWWVSKH 140 (361)
T ss_pred CCccccccCCC-------------CeeccceeEEEeccc--eeeEee-cCcCceEEeccCccEEEEEEEecccceehhhh
Confidence 99999998433 122444445555543 899999 999999999999999999988743321 1
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC-----CCC--------------CCCCCCCcccceeeeecCCCCc
Q 021160 189 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-----PTD--------------FPPLPDNAEKIMKANKQGREDH 249 (316)
Q Consensus 189 ~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~-----~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 249 (316)
.-+.+.+.|+++.|+|++-+++.|+.|++.||+..- ... +.++......+.... +++.+.
T Consensus 141 ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~-fs~sG~ 219 (361)
T KOG1523|consen 141 IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVL-FSPSGN 219 (361)
T ss_pred hCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeE-eCCCCC
Confidence 223467889999999999999999999999999742 111 111112233343444 778888
Q ss_pred eeEEecCCCeEEEEEeccc
Q 021160 250 SRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 250 ~~~s~~~d~~~~~w~~~~~ 268 (316)
.++-.+.|+++.+-|-...
T Consensus 220 ~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 220 RLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred EeeEecCCCceEEeecCCC
Confidence 8988899999888886554
No 203
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.61 E-value=1.7e-14 Score=115.16 Aligned_cols=167 Identities=18% Similarity=0.273 Sum_probs=129.9
Q ss_pred CcccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEE
Q 021160 91 NNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 168 (316)
Q Consensus 91 ~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 168 (316)
...++..+.|.+... ++++ +.|..|++|-+........ ..+.+....+..|... |+.+.| +|+|.+++
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-------~~~V~y~s~Ls~H~~a--VN~vRf-~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-------DMKVEYLSSLSRHTRA--VNVVRF-SPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-------ceeEEEeecccCCcce--eEEEEE-cCCcCeee
Confidence 356899999999876 8888 4799999999976621110 0112334556778755 999999 99999999
Q ss_pred EeccCCeEEEEecc--------C--------CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCC
Q 021160 169 SGSDCGHLFIWKKK--------G--------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPL 231 (316)
Q Consensus 169 ~~~~dg~v~~wd~~--------~--------~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~ 231 (316)
+|+++|.+.+|-.. + ......+.+|...|..++|+|++.++++++.|..+++||+..+. ...+
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL 161 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec
Confidence 99999999999865 2 12344567899999999999999999999999999999999998 5566
Q ss_pred CCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 232 PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
.+|...+...+ |.+.+.++++-+.|...+...+...
T Consensus 162 ~dh~~yvqgva-wDpl~qyv~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 162 DDHEHYVQGVA-WDPLNQYVASKSSDRHPEGFSAKLK 197 (434)
T ss_pred cccccccceee-cchhhhhhhhhccCcccceeeeeee
Confidence 66776664454 8888889999888876666665544
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.8e-14 Score=115.55 Aligned_cols=185 Identities=12% Similarity=0.104 Sum_probs=131.7
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+|++|||+.-+........ .|.+.|.++.|+|++ .+|++-+.| ..+||+.+++.....
T Consensus 165 dg~lRv~~~Ps~~t~l~e~-----------~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~--------- 222 (398)
T KOG0771|consen 165 DGTLRVWEWPSMLTILEEI-----------AHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALAR--------- 222 (398)
T ss_pred cceEEEEecCcchhhhhhH-----------hhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhh---------
Confidence 7899999965443322221 278899999999999 899999998 999999998852211
Q ss_pred cccccccCCCcccEEEEEEccCC---C-eEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTS---E-LLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK 155 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~---~-~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 155 (316)
..+ .........+.|+.++ . ++++. .-+.|..|++...... +-.+..+....+ +.|.
T Consensus 223 ~t~----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~----------~~l~~~~~~~~~---~siS 285 (398)
T KOG0771|consen 223 KTP----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS----------NFLRLRKKIKRF---KSIS 285 (398)
T ss_pred cCC----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc----------cccchhhhhhcc---Ccce
Confidence 111 2223455667787776 3 33432 3566777776543110 000111222222 2399
Q ss_pred eEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160 156 GVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 226 (316)
Q Consensus 156 ~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~ 226 (316)
+++. +++|++++.|+.+|.|-+++..+-+.++..+ .|...|+.+.|+|+.+++++.+.|....+..+...
T Consensus 286 sl~V-S~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 286 SLAV-SDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred eEEE-cCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 9998 9999999999999999999999888877664 69999999999999999999999999999887653
No 205
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.3e-13 Score=122.45 Aligned_cols=235 Identities=13% Similarity=0.125 Sum_probs=155.4
Q ss_pred ceeeEEEEeeCC--CcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160 2 VLFNMLFDLRSD--SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV 79 (316)
Q Consensus 2 ~g~v~vwd~~~~--~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~ 79 (316)
+|.||||+-... +..++++....-..-. ++-.+.=.-+.|.... .+|++++.-..|+|||.....+
T Consensus 1132 dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~-~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~---------- 1199 (1387)
T KOG1517|consen 1132 DGVIRIWKDYADKWKKPELVTAWSSLSDQL-PGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQV---------- 1199 (1387)
T ss_pred CceEEEecccccccCCceeEEeeccccccC-ccCCCCCeeeehhhhC-CeEEecCCeeEEEEEeccccee----------
Confidence 699999997654 2333443322111000 1111222456788776 4566666679999999986652
Q ss_pred eecccccccCCCcccEEEEEEcc-CCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160 80 DTFCPRHLIGKNNIHITGLAYSN-TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 157 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 157 (316)
...+..+....++++.-+- .|+++++| .||.|++||.+... ....+..++.|.....|..+
T Consensus 1200 ----~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~-------------~ds~v~~~R~h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1200 ----VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP-------------PDSLVCVYREHNDVEPIVHL 1262 (1387)
T ss_pred ----EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCC-------------ccccceeecccCCcccceeE
Confidence 2223233455566665543 35777776 89999999998752 00245667778766668888
Q ss_pred EEecCCCc-EEEEeccCCeEEEEeccCCeeEE--EeecCc--c-ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 021160 158 NFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVR--LMVGDR--H-VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL 231 (316)
Q Consensus 158 ~~~~~~~~-~l~~~~~dg~v~~wd~~~~~~~~--~~~~~~--~-~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~ 231 (316)
.+ .+.|- .|++|+.+|.|++||++...... .+..|. + ..+++..|++.+.+|+|+. +.|+||++.+.++..+
T Consensus 1263 sl-q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~ 1340 (1387)
T KOG1517|consen 1263 SL-QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNII 1340 (1387)
T ss_pred Ee-ecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhccc
Confidence 88 55444 59999999999999998742222 222333 3 5899999999999999998 9999999998775554
Q ss_pred CCCc-------ccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 232 PDNA-------EKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 232 ~~~~-------~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
..+. ..+ .+..+++-.-++++|+.|..|.++.....
T Consensus 1341 k~n~~F~~q~~gs~-scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1341 KYNPGFMGQRIGSV-SCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ccCcccccCcCCCc-ceeeecchhHhhhhccCCceEEEeecCCc
Confidence 4332 122 33336676678889999999999975544
No 206
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.60 E-value=1.4e-14 Score=109.53 Aligned_cols=170 Identities=12% Similarity=0.138 Sum_probs=120.3
Q ss_pred ccceEEEEECC-CCCc-EEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e
Q 021160 34 SIRLNAIVIDP-RNPN-YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 110 (316)
Q Consensus 34 ~~~v~~~~~~~-~~~~-~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 110 (316)
.+.+.+..+.. .+.. ++++|-++|.+.+||+.++..+-...... ....-...|..++.++.|.+.-..=++ +
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~-----kv~~~~ash~qpvlsldyas~~~rGisgg 224 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSS-----KVESPNASHKQPVLSLDYASSCDRGISGG 224 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccc-----ccccchhhccCcceeeeechhhcCCcCCC
Confidence 45677766433 2323 45666789999999999874211110000 111112568899999999875443333 4
Q ss_pred cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160 111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 190 (316)
Q Consensus 111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~ 190 (316)
.+..+..|.++...+. ........-... .+..+.. -||++.+|+++.|+.+++|..++.+++..+
T Consensus 225 a~dkl~~~Sl~~s~gs------------lq~~~e~~lknp--Gv~gvrI-RpD~KIlATAGWD~RiRVyswrtl~pLAVL 289 (323)
T KOG0322|consen 225 ADDKLVMYSLNHSTGS------------LQIRKEITLKNP--GVSGVRI-RPDGKILATAGWDHRIRVYSWRTLNPLAVL 289 (323)
T ss_pred ccccceeeeeccccCc------------ccccceEEecCC--CccceEE-ccCCcEEeecccCCcEEEEEeccCCchhhh
Confidence 5778888888654111 011111221222 2778888 899999999999999999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160 191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 223 (316)
Q Consensus 191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~ 223 (316)
+-|...|++++|+|+.+.+|.++.|+.|.+|++
T Consensus 290 kyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 KYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999986
No 207
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=7.7e-13 Score=114.05 Aligned_cols=211 Identities=9% Similarity=0.035 Sum_probs=132.5
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe---cCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG---SDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~---~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
.|.+||........+.. +...+.+.+|+|+| +.|+..+ .+..+.+|++.+++..
T Consensus 180 ~l~~~d~dg~~~~~lt~------------~~~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~G~~~---------- 236 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHR------------SPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVR---------- 236 (429)
T ss_pred eEEEEcCCCCCCEEeec------------CCCceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCCeE----------
Confidence 46677765544433221 35578999999999 6666543 3457999999877521
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEEe--cCC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLISY--NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG 156 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 156 (316)
.. .........++|+|+|+.|+.. .++ .|++||+.++ .. ..+..+... +..
T Consensus 237 --~l----~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg----------------~~-~~lt~~~~~--~~~ 291 (429)
T PRK03629 237 --QV----ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG----------------QI-RQVTDGRSN--NTE 291 (429)
T ss_pred --Ec----cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC----------------CE-EEccCCCCC--cCc
Confidence 01 1112234468999999866642 344 5899999876 23 333333322 678
Q ss_pred EEEecCCCcEEEEeccC-C--eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEecCCCCCCCC
Q 021160 157 VNFFGPNDEYVMSGSDC-G--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPP 230 (316)
Q Consensus 157 ~~~~~~~~~~l~~~~~d-g--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d---~~i~iwd~~~~~~~~ 230 (316)
..| +|+|+.|+..+.+ + .|+++++.+++. ..+..+........|+|++++|+..+.+ ..|.+||+.++....
T Consensus 292 ~~w-SPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~ 369 (429)
T PRK03629 292 PTW-FPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 369 (429)
T ss_pred eEE-CCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence 888 9999988877654 3 455567766654 3443344455678999999998776543 358889998877544
Q ss_pred CCCCcccceeeeecCCCCceeEEecCCCe---EEEEEec
Q 021160 231 LPDNAEKIMKANKQGREDHSRITLTPDVI---MHVLRLQ 266 (316)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~s~~~d~~---~~~w~~~ 266 (316)
+.... .. ....|+++++.++..+.++. +.++++.
T Consensus 370 Lt~~~-~~-~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 370 LTDTF-LD-ETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred eCCCC-CC-CCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 44221 11 12337889998888777654 4555553
No 208
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=3e-14 Score=119.10 Aligned_cols=154 Identities=19% Similarity=0.336 Sum_probs=122.9
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEecC
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYND 112 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~d 112 (316)
.+.|.++.|+|.. .++++++. ..|++||+....+ .+.+ ......|..++.+|.|. +++++.|
T Consensus 566 kG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqel--------------vKkL-~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 566 KGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQEL--------------VKKL-LTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred CCceeEEEecCCC-ceEEEEec-cceEEEehhHHHH--------------HHHH-hcCCeeeeeeeecCCCCeEEEecCC
Confidence 5679999999998 56666655 7899999987652 2333 22356789999999996 5566789
Q ss_pred CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc------CC--
Q 021160 113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK------GG-- 184 (316)
Q Consensus 113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~------~~-- 184 (316)
+.++.+|+.-.. ++.+.+..|... +++|+| ++.-.++++|+.||++.++.-. ..
T Consensus 629 ~k~~WfDldlss---------------kPyk~lr~H~~a--vr~Va~-H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpl 690 (733)
T KOG0650|consen 629 KKMCWFDLDLSS---------------KPYKTLRLHEKA--VRSVAF-HKRYPLFASGSDDGTVIVFHGMVYNDLLQNPL 690 (733)
T ss_pred CeeEEEEcccCc---------------chhHHhhhhhhh--hhhhhh-ccccceeeeecCCCcEEEEeeeeehhhhcCCc
Confidence 999999998764 677888889866 999999 8888999999999999988621 11
Q ss_pred -eeEEEeecCccc----eEEEEEcCCCCeEEEEeCCCcEEEec
Q 021160 185 -KLVRLMVGDRHV----VNQLEPHPHIPMFATCGIEKTVKLWA 222 (316)
Q Consensus 185 -~~~~~~~~~~~~----v~~~~~~p~~~~l~s~~~d~~i~iwd 222 (316)
-++..+.+|... |....|||...+|.+++.||+|++|.
T Consensus 691 iVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 691 IVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred eEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 235667788754 89999999999999999999999983
No 209
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.3e-12 Score=113.30 Aligned_cols=183 Identities=10% Similarity=0.062 Sum_probs=120.1
Q ss_pred CccceEEEEECCCCCcEEEEEec---CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE-
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI- 108 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~---dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~- 108 (316)
|...+.+.+|+|+| +.|+..+. +..|.+||+.+++.. .+ ..+...+...+|+|+|+.|+
T Consensus 200 ~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~~---------------~l-~~~~g~~~~~~~SPDG~~la~ 262 (435)
T PRK05137 200 GSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQRE---------------LV-GNFPGMTFAPRFSPDGRKVVM 262 (435)
T ss_pred CCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcEE---------------Ee-ecCCCcccCcEECCCCCEEEE
Confidence 56789999999999 66666543 468999999877521 11 23345667889999998554
Q ss_pred Ee-cCC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-C--CeEEEEecc
Q 021160 109 SY-NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--GHLFIWKKK 182 (316)
Q Consensus 109 s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d--g~v~~wd~~ 182 (316)
+. .++ .|++||+.++ ....+..+... .....| +|+|+.|+..+. + ..|+++|+.
T Consensus 263 ~~~~~g~~~Iy~~d~~~~-----------------~~~~Lt~~~~~--~~~~~~-spDG~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 263 SLSQGGNTDIYTMDLRSG-----------------TTTRLTDSPAI--DTSPSY-SPDGSQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred EEecCCCceEEEEECCCC-----------------ceEEccCCCCc--cCceeE-cCCCCEEEEEECCCCCCeEEEEECC
Confidence 43 344 4788888776 23444444432 567888 999999887764 3 368888987
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEec
Q 021160 183 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT 255 (316)
Q Consensus 183 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 255 (316)
.++. ..+..+...+....|+|+++.|+..+.+ ..|.+||+.++....+... ... ....|+++++.++..+
T Consensus 323 g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~-~~~-~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 323 GSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG-FLV-EGPTWAPNGRVIMFFR 395 (435)
T ss_pred CCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCC-CCC-CCCeECCCCCEEEEEE
Confidence 6654 3444344556778999999998776543 3688889866554333321 112 2233777777765543
No 210
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=8.8e-13 Score=114.15 Aligned_cols=211 Identities=9% Similarity=0.034 Sum_probs=131.2
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEec---CCcEEEEeCcCCcccCCCCCCCCce
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~---dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
.|.+||........+ .. |...+.+.+|+|++ +.|+..+. +..|.+||+.+++..
T Consensus 185 ~l~i~D~~g~~~~~l-t~-----------~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~---------- 241 (433)
T PRK04922 185 ALQVADSDGYNPQTI-LR-----------SAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQRE---------- 241 (433)
T ss_pred EEEEECCCCCCceEe-ec-----------CCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEE----------
Confidence 577787754433222 21 45678999999999 67776653 346999999877521
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEE-E-ecCC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLI-S-YNDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG 156 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 156 (316)
.+ ........+++|+|+|+.++ + ..++ .|++||+.++ . ...+..+... ...
T Consensus 242 -----~l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g----------------~-~~~lt~~~~~--~~~ 296 (433)
T PRK04922 242 -----LV-ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR----------------Q-LTRLTNHFGI--DTE 296 (433)
T ss_pred -----Ee-ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC----------------C-eEECccCCCC--ccc
Confidence 11 11223345789999998554 3 3344 6999999876 2 3334444322 567
Q ss_pred EEEecCCCcEEEEecc-CC--eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEecCCCCCCCC
Q 021160 157 VNFFGPNDEYVMSGSD-CG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPP 230 (316)
Q Consensus 157 ~~~~~~~~~~l~~~~~-dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~---~i~iwd~~~~~~~~ 230 (316)
.+| +|+|++|+..+. +| .++++++.+++.. .+..+......++|+|++++|+..+.++ .|.+||+.++....
T Consensus 297 ~~~-spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~ 374 (433)
T PRK04922 297 PTW-APDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT 374 (433)
T ss_pred eEE-CCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE
Confidence 788 999998887764 44 4777777766643 3322333445689999999987665333 69999998877544
Q ss_pred CCCCcccceeeeecCCCCceeEEecCC---CeEEEEEec
Q 021160 231 LPDNAEKIMKANKQGREDHSRITLTPD---VIMHVLRLQ 266 (316)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~s~~~d---~~~~~w~~~ 266 (316)
+... ...... .|+++++.++..+.+ +.+.++++.
T Consensus 375 Lt~~-~~~~~p-~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 375 LTPG-SLDESP-SFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CCCC-CCCCCc-eECCCCCEEEEEEecCCceEEEEEECC
Confidence 4322 122222 377888776655442 345555543
No 211
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.57 E-value=1.3e-14 Score=125.56 Aligned_cols=232 Identities=16% Similarity=0.299 Sum_probs=152.2
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF 82 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~ 82 (316)
-.|+||...+..+....+ ||.+.|+.++.+..+ ..+++++.|..|++|.+.++.
T Consensus 212 ~lvKiwS~et~~~lAs~r-----------Ghs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~~~-------------- 265 (1113)
T KOG0644|consen 212 RLVKIWSMETARCLASCR-----------GHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPDGA-------------- 265 (1113)
T ss_pred ceeeeeeccchhhhccCC-----------CCccccchhccchhh-hhhhhcccCceEEEEecCCCc--------------
Confidence 357888866655543332 689999999999988 899999999999999999885
Q ss_pred ccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCC---CCCCccCCccccccC----CCccee-eCCcCC---
Q 021160 83 CPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGL---GPSPLSLSPEDLQKR----EEPQVY-SGHRNS--- 151 (316)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~----~~~~~~-~~~~~~--- 151 (316)
+..++.+|++.|++++|+|-- .++.||++++||.+-.. .|.+..+.-.++-.. .....+ .+....
T Consensus 266 -pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~ 341 (1113)
T KOG0644|consen 266 -PVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR 341 (1113)
T ss_pred -hHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence 334448999999999999964 45689999999998211 111111111100000 000000 000000
Q ss_pred -ceeeeEEEecCC-----------CcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcE
Q 021160 152 -QTVKGVNFFGPN-----------DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTV 218 (316)
Q Consensus 152 -~~i~~~~~~~~~-----------~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~s~~~d~~i 218 (316)
-.+.+++| ... ..+.+++-.+-.+++|++.+|++.+.+.+|...+..+.+||-+.. ..+++.||..
T Consensus 342 n~e~~~l~~-~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst 420 (1113)
T KOG0644|consen 342 NHEFEQLAW-RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST 420 (1113)
T ss_pred cchhhHhhh-hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence 00112222 111 123344445667889999999999999999999999999998776 5688999999
Q ss_pred EEecCCCCC-CCC-CCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160 219 KLWAPMPTD-FPP-LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 219 ~iwd~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~ 267 (316)
.|||+..+. ++. ..+|.. +... .+++++..++....-|.+.+.....
T Consensus 421 ~iwdi~eg~pik~y~~gh~k-l~d~-kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 421 IIWDIWEGIPIKHYFIGHGK-LVDG-KFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred EeeecccCCcceeeecccce-eecc-ccCCCCceEecCCCCCceEEeccCC
Confidence 999998775 222 223332 3333 3788887777777778888776543
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=5.1e-15 Score=120.07 Aligned_cols=207 Identities=14% Similarity=0.205 Sum_probs=156.1
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceec
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF 82 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~ 82 (316)
|+|--+|..+.+....+.. ...|.++.|-.+. ++||++ ....+.|||-..-++.
T Consensus 151 GHlAa~Dw~t~~L~~Ei~v------------~Etv~Dv~~LHne-q~~AVA-QK~y~yvYD~~GtElH------------ 204 (545)
T KOG1272|consen 151 GHLAAFDWVTKKLHFEINV------------METVRDVTFLHNE-QFFAVA-QKKYVYVYDNNGTELH------------ 204 (545)
T ss_pred cceeeeecccceeeeeeeh------------hhhhhhhhhhcch-HHHHhh-hhceEEEecCCCcEEe------------
Confidence 6677777777665444433 3468889998776 667665 5578999997644321
Q ss_pred ccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEec
Q 021160 83 CPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG 161 (316)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 161 (316)
|++. ...|..+.|-|..-+|+++ ..|.+..-|+..+ +.+..+...... +..++- +
T Consensus 205 Clk~-----~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G----------------klVa~~~t~~G~--~~vm~q-N 260 (545)
T KOG1272|consen 205 CLKR-----HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTG----------------KLVASIRTGAGR--TDVMKQ-N 260 (545)
T ss_pred ehhh-----cCchhhhcccchhheeeecccCCceEEEeechh----------------hhhHHHHccCCc--cchhhc-C
Confidence 3222 3468889999988788885 6899999999998 677777665544 677776 8
Q ss_pred CCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCC-Ccccce
Q 021160 162 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD-NAEKIM 239 (316)
Q Consensus 162 ~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~~~ 239 (316)
|-+..+-+|...|+|.+|.....+++..+..|.++|.++++.++|.++||.+.|..++|||++... +.+... +...-
T Consensus 261 P~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~- 339 (545)
T KOG1272|consen 261 PYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASN- 339 (545)
T ss_pred CccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccc-
Confidence 889999999999999999999999988888999999999999999999999999999999999876 443332 11111
Q ss_pred eeeecCCCCceeEEecCCCeEEEEE
Q 021160 240 KANKQGREDHSRITLTPDVIMHVLR 264 (316)
Q Consensus 240 ~~~~~~~~~~~~~s~~~d~~~~~w~ 264 (316)
.+....-+++.+...-+.+|.
T Consensus 340 ----ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 340 ----LSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred ----cccccccceeeecCCeeeeeh
Confidence 222334567777777888995
No 213
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.56 E-value=4e-12 Score=106.45 Aligned_cols=205 Identities=11% Similarity=0.132 Sum_probs=125.0
Q ss_pred ceEEEEECCCCCcEEEEEe-cCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE-Ee-cC
Q 021160 36 RLNAIVIDPRNPNYFAVGG-SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-SY-ND 112 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g~-~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~-~d 112 (316)
....++|+|++ +++++++ .++.|.+|++.+..... ..+. .. . +......++++|++++++ +. .+
T Consensus 81 ~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~-----~~~~-----~~-~-~~~~~~~~~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 81 SPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPV-----APIQ-----II-E-GLEGCHSANIDPDNRTLWVPCLKE 147 (330)
T ss_pred CceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCC-----Ccee-----ec-c-CCCcccEeEeCCCCCEEEEeeCCC
Confidence 46789999999 6666654 58999999997432100 0011 01 1 123456788999998664 44 58
Q ss_pred CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-CCeEEEEeccC--Ce--eE
Q 021160 113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKG--GK--LV 187 (316)
Q Consensus 113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~~wd~~~--~~--~~ 187 (316)
+.|.+||+.+.... .. ........... .....+.| +|++++++++.. ++.|.+|++.. ++ .+
T Consensus 148 ~~v~v~d~~~~g~l----------~~-~~~~~~~~~~g-~~p~~~~~-~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 148 DRIRLFTLSDDGHL----------VA-QEPAEVTTVEG-AGPRHMVF-HPNQQYAYCVNELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred CEEEEEEECCCCcc----------cc-cCCCceecCCC-CCCceEEE-CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence 99999999763100 00 00001111111 22677888 899999988876 99999999973 32 33
Q ss_pred EEeecC------ccceEEEEEcCCCCeEEEEe-CCCcEEEecCCCCC-CCCCCCCc---ccceeeeecCCCCceeEEec-
Q 021160 188 RLMVGD------RHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD-FPPLPDNA---EKIMKANKQGREDHSRITLT- 255 (316)
Q Consensus 188 ~~~~~~------~~~v~~~~~~p~~~~l~s~~-~d~~i~iwd~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~s~~- 255 (316)
..+..+ ......+.++|++++++++. .++.|.+|++.... ...+.++. .....+ .++++++++++..
T Consensus 215 ~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~-~~~~dg~~l~va~~ 293 (330)
T PRK11028 215 QTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGF-NIDHSGKYLIAAGQ 293 (330)
T ss_pred EEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCce-EECCCCCEEEEEEc
Confidence 333221 11234688999999987775 47899999985432 11111111 111122 3667777777555
Q ss_pred CCCeEEEEEecc
Q 021160 256 PDVIMHVLRLQR 267 (316)
Q Consensus 256 ~d~~~~~w~~~~ 267 (316)
.++.+.+|++..
T Consensus 294 ~~~~v~v~~~~~ 305 (330)
T PRK11028 294 KSHHISVYEIDG 305 (330)
T ss_pred cCCcEEEEEEcC
Confidence 489999998753
No 214
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=7.6e-13 Score=115.38 Aligned_cols=236 Identities=15% Similarity=0.247 Sum_probs=165.7
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCC--cEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~--~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
.+|.|+.+.+..+...+. +|..++..+.+.|... .++.+++.||.|++||...+.+........++.
T Consensus 37 ~~V~VyS~~Tg~~i~~l~-----------~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~ 105 (792)
T KOG1963|consen 37 NFVKVYSTATGECITSLE-----------DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVH 105 (792)
T ss_pred CEEEEEecchHhhhhhcc-----------cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCcee
Confidence 467777777776655333 4788999999998775 467789999999999999888765443222221
Q ss_pred eccc--c------------------c------------------------ccCCCcccEEEEEEccCCCeEEEecCCcEE
Q 021160 81 TFCP--R------------------H------------------------LIGKNNIHITGLAYSNTSELLISYNDELVY 116 (316)
Q Consensus 81 ~~~~--~------------------~------------------------~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~ 116 (316)
.... . . ....|.. -.++.+++.|++....-+..+.
T Consensus 106 ~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~ 184 (792)
T KOG1963|consen 106 ALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIH 184 (792)
T ss_pred EEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEE
Confidence 1100 0 0 0001111 2456666767666666677788
Q ss_pred EEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC----CeeEEEeec
Q 021160 117 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----GKLVRLMVG 192 (316)
Q Consensus 117 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~----~~~~~~~~~ 192 (316)
+|+..... ........-..|.-. +++.++ +|+++++++|..||.|.+|.--. ......+.=
T Consensus 185 ~~~v~~~~------------~~~~~~~~~~~Htf~--~t~~~~-spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 185 IYFVPKHT------------KHTSSRDITVHHTFN--ITCVAL-SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred EEEecccc------------eeeccchhhhhhccc--ceeEEe-ccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 88876641 000001111234433 789998 99999999999999999997432 223455666
Q ss_pred CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160 193 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 266 (316)
Q Consensus 193 ~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~ 266 (316)
|...|++++|+++|.+|++|+..+.+-+|.+.+++.+-|+--..++..+. +++++.+......|+.+.+....
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~-vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIV-VSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEE-EcCCCCeEEEEecCceEEEEecc
Confidence 88899999999999999999999999999999998666666666666666 77999999989999999999873
No 215
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.54 E-value=1.5e-12 Score=101.24 Aligned_cols=166 Identities=16% Similarity=0.168 Sum_probs=125.8
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeC-cCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDI-RKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 110 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 110 (316)
.|...|+.++|+|.. +.|++++.|..-++|.. ..+++ .+..++..++...+++.|+|.++.++.+
T Consensus 53 ~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~~W-------------kptlvLlRiNrAAt~V~WsP~enkFAVg 118 (361)
T KOG1523|consen 53 EHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGGTW-------------KPTLVLLRINRAATCVKWSPKENKFAVG 118 (361)
T ss_pred hhCcceeEEeecCCC-CceeEccCCCCccccccCCCCee-------------ccceeEEEeccceeeEeecCcCceEEec
Confidence 488999999999998 89999999999999998 44443 2222335678899999999999877775
Q ss_pred -cCCcEEEEEcCCCCCCCCccCCccccccCCCc-ceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc-----C
Q 021160 111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEP-QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-----G 183 (316)
Q Consensus 111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~-----~ 183 (316)
.-..|.+|=++... ..-.- +.-+.+. ..|++++| .|++-++++|+.|+.+++|... .
T Consensus 119 Sgar~isVcy~E~EN-------------dWWVsKhikkPir--Stv~sldW-hpnnVLlaaGs~D~k~rVfSayIK~Vde 182 (361)
T KOG1523|consen 119 SGARLISVCYYEQEN-------------DWWVSKHIKKPIR--STVTSLDW-HPNNVLLAAGSTDGKCRVFSAYIKGVDE 182 (361)
T ss_pred cCccEEEEEEEeccc-------------ceehhhhhCCccc--cceeeeec-cCCcceecccccCcceeEEEEeeecccc
Confidence 57778888776541 00000 1112233 34999999 8999999999999999999832 1
Q ss_pred -------------CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 184 -------------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 184 -------------~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
|+++.++....+.+..+.|+|+|..|+-.+.|..+.+=|.....
T Consensus 183 kpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 183 KPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 23334443455789999999999999999999999999877653
No 216
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=8.1e-13 Score=100.94 Aligned_cols=116 Identities=16% Similarity=0.324 Sum_probs=84.5
Q ss_pred ccceEEEEECCCCCcEEEE--EecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec
Q 021160 34 SIRLNAIVIDPRNPNYFAV--GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 111 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~--g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 111 (316)
.++|.+++|+|++ +.||+ |..+..|.+||++... ...+ +...+..+.|+|+|++++.++
T Consensus 59 ~~~I~~~~WsP~g-~~favi~g~~~~~v~lyd~~~~~---------------i~~~---~~~~~n~i~wsP~G~~l~~~g 119 (194)
T PF08662_consen 59 EGPIHDVAWSPNG-NEFAVIYGSMPAKVTLYDVKGKK---------------IFSF---GTQPRNTISWSPDGRFLVLAG 119 (194)
T ss_pred CCceEEEEECcCC-CEEEEEEccCCcccEEEcCcccE---------------eEee---cCCCceEEEECCCCCEEEEEE
Confidence 4579999999999 55443 4467899999997322 1122 245677899999999777742
Q ss_pred ----CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc------CCeEEEEec
Q 021160 112 ----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD------CGHLFIWKK 181 (316)
Q Consensus 112 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~v~~wd~ 181 (316)
.|.|.+||.++. +.+..+. |. .+..++| +|+|+++++++. |..++||+.
T Consensus 120 ~~n~~G~l~~wd~~~~----------------~~i~~~~-~~---~~t~~~W-sPdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 120 FGNLNGDLEFWDVRKK----------------KKISTFE-HS---DATDVEW-SPDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred ccCCCcEEEEEECCCC----------------EEeeccc-cC---cEEEEEE-cCCCCEEEEEEeccceeccccEEEEEe
Confidence 577999999876 4444433 22 2789999 999999999874 778999998
Q ss_pred cCCeeEEEe
Q 021160 182 KGGKLVRLM 190 (316)
Q Consensus 182 ~~~~~~~~~ 190 (316)
. |+.+...
T Consensus 179 ~-G~~l~~~ 186 (194)
T PF08662_consen 179 Q-GRLLYKK 186 (194)
T ss_pred c-CeEeEec
Confidence 5 7666543
No 217
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.7e-13 Score=109.38 Aligned_cols=180 Identities=14% Similarity=0.177 Sum_probs=134.5
Q ss_pred eecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEE
Q 021160 80 DTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN 158 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 158 (316)
..+|.+.+ .+|.+.|.++.|+.++++|+++ .|..+++|+++..- .-++.+++.. .+|.....|.|++
T Consensus 45 R~~~qKD~-~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~----------~~k~~KPI~~-~~~~H~SNIF~L~ 112 (609)
T KOG4227|consen 45 RPFCQKDV-REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELM----------VRKTPKPIGV-MEHPHRSNIFSLE 112 (609)
T ss_pred cchhhhhh-hhhccccceeeeccCCeEEeecCCcceeeeechHHHH----------hhcCCCCcee-ccCccccceEEEE
Confidence 34455555 7899999999999999999996 68899999986530 0001134433 3344334499999
Q ss_pred EecCCCcEEEEeccCCeEEEEeccCCeeEEEeec--CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CC--CCCC
Q 021160 159 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FP--PLPD 233 (316)
Q Consensus 159 ~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~--~~~~ 233 (316)
| ...+.++++|..+++|.+.|+++.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||.+... .. .++.
T Consensus 113 F-~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A 191 (609)
T KOG4227|consen 113 F-DLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA 191 (609)
T ss_pred E-ccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec
Confidence 9 78889999999999999999999998877642 23589999999999999999999999999998765 11 1222
Q ss_pred C-cccceeeeecCC-CCceeEEecCCCeEEEEEecccCccee
Q 021160 234 N-AEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRRQTLAY 273 (316)
Q Consensus 234 ~-~~~~~~~~~~~~-~~~~~~s~~~d~~~~~w~~~~~~~~~~ 273 (316)
. ....+... +.+ ++.++++.+..+-+.+||.+..+.+++
T Consensus 192 N~~~~F~t~~-F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~ 232 (609)
T KOG4227|consen 192 NSGKNFYTAE-FHPETPALILVNSETGGPNVFDRRMQARPVY 232 (609)
T ss_pred CCCccceeee-ecCCCceeEEeccccCCCCceeeccccchHH
Confidence 2 23334444 555 678888999999999999887655544
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.53 E-value=9.2e-13 Score=118.75 Aligned_cols=230 Identities=12% Similarity=0.128 Sum_probs=146.7
Q ss_pred CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ec
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN 111 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~ 111 (316)
|+..|..++.++....+|++|+.||+|++|+.+.-... ...+............+.++...+.+..+|. +.
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~--------~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE--------GGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcC--------cceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 88889999988766589999999999999999754310 0111111111223567888999888886666 58
Q ss_pred CCcEEEEEcCCCCCCCC--c-----------------------------------cCCccccccCCCcceeeCCcCCcee
Q 021160 112 DELVYLFEKNMGLGPSP--L-----------------------------------SLSPEDLQKREEPQVYSGHRNSQTV 154 (316)
Q Consensus 112 d~~i~iwd~~~~~~~~~--~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~i 154 (316)
||.|.+.+++....... . .+-.+|.........++.....+.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 99999999876210000 0 0011111111111222222222348
Q ss_pred eeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee-cCccceEEEEEcCCCC---eEEEE-e-CCCcEEEecCCCCCC
Q 021160 155 KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIP---MFATC-G-IEKTVKLWAPMPTDF 228 (316)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~p~~~---~l~s~-~-~d~~i~iwd~~~~~~ 228 (316)
++++. +|.+.++++|+..|.+.+||++-+.++.... .+..++..+..+|..+ ..+++ + ..+.|.+|++.++..
T Consensus 1199 TSi~i-dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1199 TSIVI-DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eEEEe-cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99998 9999999999999999999999888877664 3457888888887544 44444 3 567899999987752
Q ss_pred CC-CCCC-cccce-----------------eeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160 229 PP-LPDN-AEKIM-----------------KANKQGREDHSRITLTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 229 ~~-~~~~-~~~~~-----------------~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~ 271 (316)
++ +... ..+.+ ........+..+++++.|..|+.||.......
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 21 1100 00000 01111223567889999999999998776554
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.1e-12 Score=113.42 Aligned_cols=189 Identities=12% Similarity=0.051 Sum_probs=120.0
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEE-ecCCcEEEE--eCcCCcccCCCCCCCCce
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG-GSDEYARVY--DIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g-~~dg~v~~w--d~~~~~~~~~~~~~~~~~ 80 (316)
.|++||+.+.+...+... .+...+++|+|+| +.|+.+ +.+|.+.|| |+.+++
T Consensus 229 ~i~i~dl~tg~~~~l~~~------------~g~~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~------------ 283 (429)
T PRK01742 229 QLVVHDLRSGARKVVASF------------RGHNGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGT------------ 283 (429)
T ss_pred EEEEEeCCCCceEEEecC------------CCccCceeECCCC-CEEEEEEecCCcEEEEEEECCCCC------------
Confidence 688999977654333211 1223468999999 666655 568876666 554443
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEE-e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEE
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN 158 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 158 (316)
...+ ..+...+....|+|+|+.|+. + .++...||+++... .....+ .+.. ....
T Consensus 284 ---~~~l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~---------------~~~~~l-~~~~----~~~~ 339 (429)
T PRK01742 284 ---PSQL-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG---------------GGASLV-GGRG----YSAQ 339 (429)
T ss_pred ---eEee-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC---------------CCeEEe-cCCC----CCcc
Confidence 1112 334556778999999986554 4 46788888775431 112222 2221 3466
Q ss_pred EecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecC---CCCCCCCCCCCc
Q 021160 159 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP---MPTDFPPLPDNA 235 (316)
Q Consensus 159 ~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~---~~~~~~~~~~~~ 235 (316)
| +|+|++|+..+.++ +.+||+.+++.......+ ....+.|+|++++|+.++.++.+.+|.+ .......+..+.
T Consensus 340 ~-SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~ 415 (429)
T PRK01742 340 I-SADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD 415 (429)
T ss_pred C-CCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCC
Confidence 7 99999998887765 556999888754332222 2356789999999999998998887764 344466666666
Q ss_pred ccceeeeecCC
Q 021160 236 EKIMKANKQGR 246 (316)
Q Consensus 236 ~~~~~~~~~~~ 246 (316)
..+...+ |++
T Consensus 416 g~~~~p~-wsp 425 (429)
T PRK01742 416 GQVKFPA-WSP 425 (429)
T ss_pred CCCCCcc-cCC
Confidence 5554444 443
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=5.7e-12 Score=98.02 Aligned_cols=157 Identities=11% Similarity=0.118 Sum_probs=121.5
Q ss_pred cccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEE-e
Q 021160 92 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS-G 170 (316)
Q Consensus 92 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~ 170 (316)
..+|.++.+.++ .++....+.|++|...... +.++.+....+++.+.+++- ..+..+|+. |
T Consensus 94 ~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~---------------k~l~~~et~~NPkGlC~~~~-~~~k~~LafPg 155 (346)
T KOG2111|consen 94 NSEIKAVKLRRD--RIVVVLENKIYVYTFPDNP---------------KLLHVIETRSNPKGLCSLCP-TSNKSLLAFPG 155 (346)
T ss_pred ccceeeEEEcCC--eEEEEecCeEEEEEcCCCh---------------hheeeeecccCCCceEeecC-CCCceEEEcCC
Confidence 567889988765 6677778999999987431 56666666665555666653 344445544 4
Q ss_pred ccCCeEEEEeccCCee--EEEeecCccceEEEEEcCCCCeEEEEeCCCc-EEEecCCCCC-CCCCCC--Ccccceeeeec
Q 021160 171 SDCGHLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCGIEKT-VKLWAPMPTD-FPPLPD--NAEKIMKANKQ 244 (316)
Q Consensus 171 ~~dg~v~~wd~~~~~~--~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~-i~iwd~~~~~-~~~~~~--~~~~~~~~~~~ 244 (316)
-.-|.|.+-|+...+. ...+.+|.+.|.+++.+.+|..+||+|..|+ |||||..++. +.+++. ....++.++ +
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia-F 234 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA-F 234 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE-e
Confidence 5679999999876554 4678899999999999999999999999997 7999999987 666653 233455666 9
Q ss_pred CCCCceeEEecCCCeEEEEEecc
Q 021160 245 GREDHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 245 ~~~~~~~~s~~~d~~~~~w~~~~ 267 (316)
+++..+++..|..|+++++.++.
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999999999999875
No 221
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.50 E-value=3.9e-12 Score=99.44 Aligned_cols=234 Identities=13% Similarity=0.041 Sum_probs=141.4
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.+.|++|++...+-...+.. ...++.+++|+|+|..++.+...+-.|.+|.+.+.+....
T Consensus 70 ~~~vqvwsl~Qpew~ckIde-----------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~--------- 129 (447)
T KOG4497|consen 70 DPKVQVWSLVQPEWYCKIDE-----------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL--------- 129 (447)
T ss_pred cceEEEEEeecceeEEEecc-----------CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe---------
Confidence 46899999987664333332 2568999999999966777888899999999987763210
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEec--CCc--EE-----------EEEcCCCC------CCCCccCCccccccCC
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISYN--DEL--VY-----------LFEKNMGL------GPSPLSLSPEDLQKRE 140 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--d~~--i~-----------iwd~~~~~------~~~~~~~~~~~~~~~~ 140 (316)
..-+..+..++|+|+|++.+... |.. +. -+++++.. .|....+.+++..-..
T Consensus 130 -------~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley 202 (447)
T KOG4497|consen 130 -------PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY 202 (447)
T ss_pred -------cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh
Confidence 11123346677777777655432 221 11 11111110 1111111111100001
Q ss_pred CcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE--------------------------------
Q 021160 141 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-------------------------------- 188 (316)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~-------------------------------- 188 (316)
.+..+ +.+ -.+..++| +|.+++|+.|+.|+.+++.+--+-+...
T Consensus 203 kv~aY--e~~-lG~k~v~w-sP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 203 KVYAY--ERG-LGLKFVEW-SPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred eeeee--eec-cceeEEEe-ccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 11111 111 12888998 9999999999999999887633222111
Q ss_pred ----------------------------Eee------cCccceEEEEEcCCCCeEEEEeC--CCcEEEecCCCCCCCCCC
Q 021160 189 ----------------------------LMV------GDRHVVNQLEPHPHIPMFATCGI--EKTVKLWAPMPTDFPPLP 232 (316)
Q Consensus 189 ----------------------------~~~------~~~~~v~~~~~~p~~~~l~s~~~--d~~i~iwd~~~~~~~~~~ 232 (316)
.++ .....+--++|++|..+++|-.. -..+-+||++..++....
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL 358 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL 358 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence 011 11234667999999999988753 246899999998876666
Q ss_pred CCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160 233 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~ 267 (316)
....++.... |.+....++.+.....+.+|....
T Consensus 359 iQk~piraf~-WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 359 IQKHPIRAFE-WDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred hhccceeEEE-eCCCCceEEEEcCCceEEEEcCCC
Confidence 5666665555 777666666666667788897543
No 222
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.50 E-value=1.3e-12 Score=115.86 Aligned_cols=193 Identities=16% Similarity=0.133 Sum_probs=146.6
Q ss_pred EEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEE---EEEEccCCCeEEEe-cCCcE
Q 021160 40 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHIT---GLAYSNTSELLISY-NDELV 115 (316)
Q Consensus 40 ~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~~~~l~s~-~d~~i 115 (316)
..+.-.+ ..++.++.+..+.+||.........+. ........ -+-++++.-+++++ .-+.|
T Consensus 93 ~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~--------------~~er~~l~~~~~~g~s~~~~~i~~gsv~~~i 157 (967)
T KOG0974|consen 93 AKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQ--------------SDERCTLYSSLIIGDSAEELYIASGSVFGEI 157 (967)
T ss_pred cchhhhc-ceEEEEEcCceEEEEecccCceehhcC--------------CCceEEEEeEEEEeccCcEEEEEeccccccE
Confidence 3344445 678888888999999988665321111 11111111 12233333366775 58999
Q ss_pred EEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE-EeecCc
Q 021160 116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDR 194 (316)
Q Consensus 116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~-~~~~~~ 194 (316)
.+|+...- +....+.+|.+. +.++.+ +.+|.++++.|+|..+++|++.+.+... ...+|+
T Consensus 158 ivW~~~~d----------------n~p~~l~GHeG~--iF~i~~-s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 158 IVWKPHED----------------NKPIRLKGHEGS--IFSIVT-SLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EEEecccc----------------CCcceecccCCc--eEEEEE-ccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 99998733 233368899977 999999 9999999999999999999999988766 667899
Q ss_pred cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 195 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 195 ~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
.+|..++|+|+ .++|+++|.+.++|+.....+..+.+|...-......+.+....+|+..|+.+++|++..+
T Consensus 219 aRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 219 ARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999999998 8999999999999988887777888887766555557778889999999999999998654
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=4.1e-12 Score=109.62 Aligned_cols=188 Identities=12% Similarity=0.083 Sum_probs=117.5
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEE-EEecCC--cEEEEeCcCCcccCCCCCCCCce
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFA-VGGSDE--YARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~-~g~~dg--~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
.|.+||+.+.+...+... .+.+.+.+|+|+| +.|+ +.+.+| .|.+||+.+++..
T Consensus 224 ~i~i~dl~~G~~~~l~~~------------~~~~~~~~~SPDG-~~La~~~~~~g~~~I~~~d~~tg~~~---------- 280 (429)
T PRK03629 224 ALVIQTLANGAVRQVASF------------PRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQIR---------- 280 (429)
T ss_pred EEEEEECCCCCeEEccCC------------CCCcCCeEECCCC-CEEEEEEcCCCCcEEEEEECCCCCEE----------
Confidence 567777766544332211 2234568999999 5555 445555 4888999877521
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEE-ec-CCc--EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-DEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG 156 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 156 (316)
.+ ..+...+....|+|+|+.|+. +. ++. |+++|+.++ ....+...... ...
T Consensus 281 -----~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-----------------~~~~lt~~~~~--~~~ 335 (429)
T PRK03629 281 -----QV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-----------------APQRITWEGSQ--NQD 335 (429)
T ss_pred -----Ec-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-----------------CeEEeecCCCC--ccC
Confidence 11 222345678899999996665 33 344 555566554 22333323222 556
Q ss_pred EEEecCCCcEEEEeccC---CeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCc---EEEecCCCCCCCC
Q 021160 157 VNFFGPNDEYVMSGSDC---GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKT---VKLWAPMPTDFPP 230 (316)
Q Consensus 157 ~~~~~~~~~~l~~~~~d---g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~---i~iwd~~~~~~~~ 230 (316)
..| +|+|++|+..+.+ ..|++||+.+++.. .+... .......|+|||+.|+.++.++. +.++++.......
T Consensus 336 ~~~-SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~ 412 (429)
T PRK03629 336 ADV-SSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR 412 (429)
T ss_pred EEE-CCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEE
Confidence 778 9999998876543 35889999887643 33321 22346789999999988887764 7788887766666
Q ss_pred CCCCcccceeee
Q 021160 231 LPDNAEKIMKAN 242 (316)
Q Consensus 231 ~~~~~~~~~~~~ 242 (316)
+..+...+....
T Consensus 413 l~~~~~~~~~p~ 424 (429)
T PRK03629 413 LPATDGQVKFPA 424 (429)
T ss_pred CccCCCCcCCcc
Confidence 766655554444
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=7.3e-12 Score=108.12 Aligned_cols=185 Identities=11% Similarity=0.055 Sum_probs=114.9
Q ss_pred CccceEEEEECCCCCcEEEEEecC---CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE-
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI- 108 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~d---g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~- 108 (316)
+...+.+.+|+|++ +.|+..+.+ ..|.+||+.+++.. .+ ......+...+|+|+|+.|+
T Consensus 194 ~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~~---------------~l-~~~~g~~~~~~~SPDG~~la~ 256 (427)
T PRK02889 194 SPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRRR---------------VV-ANFKGSNSAPAWSPDGRTLAV 256 (427)
T ss_pred CCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCEE---------------Ee-ecCCCCccceEECCCCCEEEE
Confidence 46678999999999 677766532 45999999877521 11 11233456889999998665
Q ss_pred E-ecCCcEEEEE--cCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-CCeEEEEe--cc
Q 021160 109 S-YNDELVYLFE--KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWK--KK 182 (316)
Q Consensus 109 s-~~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~~wd--~~ 182 (316)
+ ..++...||. +..+ ..+.+..+... .....| +|+|+.|+..+. +|...+|. +.
T Consensus 257 ~~~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~~~~w-SpDG~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 257 ALSRDGNSQIYTVNADGS-----------------GLRRLTQSSGI--DTEPFF-SPDGRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred EEccCCCceEEEEECCCC-----------------CcEECCCCCCC--CcCeEE-cCCCCEEEEEecCCCCcEEEEEECC
Confidence 3 3567655555 4433 23344433322 556778 999998886654 45555555 44
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCC
Q 021160 183 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD 257 (316)
Q Consensus 183 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d 257 (316)
+++. ..+..+.......+|+|+|++|+..+.++ .|.+||+.++....+.... .. ....|+++++.++..+.+
T Consensus 317 ~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~-~~-~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 317 GGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT-RD-ESPSFAPNGRYILYATQQ 391 (427)
T ss_pred CCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC-Cc-cCceECCCCCEEEEEEec
Confidence 4443 22222223344678999999988776554 5999999887744443221 11 223477787777665544
No 225
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.47 E-value=2.5e-11 Score=105.04 Aligned_cols=185 Identities=12% Similarity=0.068 Sum_probs=119.7
Q ss_pred CccceEEEEECCCCCcEEEEEecC---CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE-
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI- 108 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~d---g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~- 108 (316)
+...+.+.+|+|++ ++++.+..+ ..|++||+.+++.. .+ ..+...+.+++|+|+|+.|+
T Consensus 188 ~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~---------------~~-~~~~~~~~~~~~spDg~~l~~ 250 (417)
T TIGR02800 188 SREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQRE---------------KV-ASFPGMNGAPAFSPDGSKLAV 250 (417)
T ss_pred CCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEE---------------Ee-ecCCCCccceEECCCCCEEEE
Confidence 34568889999999 777766543 47999999877521 11 22334556789999998554
Q ss_pred Ee-cC--CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC-C--eEEEEecc
Q 021160 109 SY-ND--ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-G--HLFIWKKK 182 (316)
Q Consensus 109 s~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g--~v~~wd~~ 182 (316)
+. .+ ..|++||+.++ ....+..+... .....| +|+++.|+..+.. + .|+++++.
T Consensus 251 ~~~~~~~~~i~~~d~~~~-----------------~~~~l~~~~~~--~~~~~~-s~dg~~l~~~s~~~g~~~iy~~d~~ 310 (417)
T TIGR02800 251 SLSKDGNPDIYVMDLDGK-----------------QLTRLTNGPGI--DTEPSW-SPDGKSIAFTSDRGGSPQIYMMDAD 310 (417)
T ss_pred EECCCCCccEEEEECCCC-----------------CEEECCCCCCC--CCCEEE-CCCCCEEEEEECCCCCceEEEEECC
Confidence 33 33 45889998775 22333333322 446677 8999988776543 2 68888888
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCC
Q 021160 183 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD 257 (316)
Q Consensus 183 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d 257 (316)
+++. ..+..+...+..+.|+|++++++.++.++ .|.+||+.++....+..... . ....+++++..++..+.+
T Consensus 311 ~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~-~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 311 GGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGL-D-ESPSFAPNGRMILYATTR 385 (417)
T ss_pred CCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCC-C-CCceECCCCCEEEEEEeC
Confidence 7664 34444455667889999999988877665 78899988765443332211 1 122367777766655554
No 226
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=2.7e-12 Score=102.34 Aligned_cols=168 Identities=14% Similarity=0.127 Sum_probs=128.2
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC-CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~-~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
..+++||+... ++++..++.++.....--+--++++.|-+. .++.||+++.-++|++||.+.++ .|+..
T Consensus 173 n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR--------RPV~~ 242 (412)
T KOG3881|consen 173 NELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR--------RPVAQ 242 (412)
T ss_pred cceeeeecccc--eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC--------cceeE
Confidence 46899999876 678887776644332222334578888875 13799999999999999999664 56666
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcce-eeCCcCCceeeeEEE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHRNSQTVKGVNF 159 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~ 159 (316)
|. -...+++++...|+++++.++ .-+.+..||++.+ +.... +.+.... +.++..
T Consensus 243 fd------~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~----------------kl~g~~~kg~tGs--irsih~ 298 (412)
T KOG3881|consen 243 FD------FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG----------------KLLGCGLKGITGS--IRSIHC 298 (412)
T ss_pred ec------cccCcceeeeecCCCcEEEEecccchhheecccCc----------------eeeccccCCccCC--cceEEE
Confidence 53 336689999999999988887 6899999999988 55544 7777765 999998
Q ss_pred ecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCC
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI 206 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~ 206 (316)
+|.++++++++-|..|+|+|+++.+++..... .+.++++.+.++-
T Consensus 299 -hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~~ 343 (412)
T KOG3881|consen 299 -HPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDDV 343 (412)
T ss_pred -cCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCCc
Confidence 89999999999999999999999776654432 3456677776543
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=4.4e-11 Score=103.72 Aligned_cols=208 Identities=9% Similarity=0.065 Sum_probs=132.4
Q ss_pred CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe----cCCcEEEEEcCCCCCCCCccCC
Q 021160 57 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY----NDELVYLFEKNMGLGPSPLSLS 132 (316)
Q Consensus 57 g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~ 132 (316)
..|.++|..... ...+ ..|...+...+|+|+|+.|+.. .+..|++||+.++
T Consensus 182 ~~l~~~d~dg~~---------------~~~l-t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g--------- 236 (435)
T PRK05137 182 KRLAIMDQDGAN---------------VRYL-TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG--------- 236 (435)
T ss_pred eEEEEECCCCCC---------------cEEE-ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC---------
Confidence 368888876443 2222 4566789999999999866653 2568999999876
Q ss_pred ccccccCCCcceeeCCcCCceeeeEEEecCCCcEEE-EeccCC--eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeE
Q 021160 133 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF 209 (316)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 209 (316)
....+..+... +...+| +|+|+.|+ +.+.++ .|++||+.+++. ..+..+.......+|+|+++.|
T Consensus 237 --------~~~~l~~~~g~--~~~~~~-SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i 304 (435)
T PRK05137 237 --------QRELVGNFPGM--TFAPRF-SPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQI 304 (435)
T ss_pred --------cEEEeecCCCc--ccCcEE-CCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEE
Confidence 22344444433 677888 99998775 445454 478889887765 4455566666779999999998
Q ss_pred EEEeC-CC--cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCC---CeEEEEEecccCccee--------EE
Q 021160 210 ATCGI-EK--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD---VIMHVLRLQRRQTLAY--------RE 275 (316)
Q Consensus 210 ~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d---~~~~~w~~~~~~~~~~--------~~ 275 (316)
+..+. ++ .|+++|+.++....+......... ..|+++++.++....+ ..+.+|++..+..... ..
T Consensus 305 ~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~-~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~ 383 (435)
T PRK05137 305 VFESDRSGSPQLYVMNADGSNPRRISFGGGRYST-PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPT 383 (435)
T ss_pred EEEECCCCCCeEEEEECCCCCeEEeecCCCcccC-eEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCe
Confidence 77663 33 688889887765554433222323 3478888887765433 4677777654322111 14
Q ss_pred eecccccccccCC-C-----CeEEEEeccCCCC
Q 021160 276 RRYNAADFESDEE-E-----GETYLLGFSDSDA 302 (316)
Q Consensus 276 ~~~~~~~~~~~~~-~-----~~v~~~~~~~~~~ 302 (316)
++|++..+..... . ..+|++++..+..
T Consensus 384 ~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 384 WAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred ECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 6666665543211 1 3578888765443
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=2.8e-11 Score=104.80 Aligned_cols=180 Identities=11% Similarity=-0.000 Sum_probs=112.8
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCC--cEEEEeCcCCcccCCCCCCCCcee
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg--~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.|.+||+.+.+...+.. +.+...+.+|+|+|..++++.+.+| .|.+||+.+++..
T Consensus 229 ~l~~~dl~~g~~~~l~~------------~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----------- 285 (433)
T PRK04922 229 AIYVQDLATGQRELVAS------------FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----------- 285 (433)
T ss_pred EEEEEECCCCCEEEecc------------CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-----------
Confidence 57888887665433221 1233457899999944445556555 5899999877521
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEec--CCc--EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISYN--DEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 157 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 157 (316)
.+ ..+.......+|+|+|+.|+..+ ++. |+++++.++ . .+.+...... ....
T Consensus 286 ----~l-t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g----------------~-~~~lt~~g~~--~~~~ 341 (433)
T PRK04922 286 ----RL-TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG----------------S-AERLTFQGNY--NARA 341 (433)
T ss_pred ----EC-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC----------------C-eEEeecCCCC--ccCE
Confidence 11 22333446789999999666532 444 667776655 2 2223222222 4467
Q ss_pred EEecCCCcEEEEeccCC---eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEecCCCCCCCCC
Q 021160 158 NFFGPNDEYVMSGSDCG---HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPL 231 (316)
Q Consensus 158 ~~~~~~~~~l~~~~~dg---~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d---~~i~iwd~~~~~~~~~ 231 (316)
+| +|+|++|+..+.++ .|++||+.+++.. .+. +........|+|+++.++..+.+ ..|.++++.+.....+
T Consensus 342 ~~-SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 342 SV-SPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRL 418 (433)
T ss_pred EE-CCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEc
Confidence 88 99999998765433 6999999887754 343 22244567999999987766543 3577888876554444
Q ss_pred CC
Q 021160 232 PD 233 (316)
Q Consensus 232 ~~ 233 (316)
..
T Consensus 419 ~~ 420 (433)
T PRK04922 419 VS 420 (433)
T ss_pred cc
Confidence 43
No 229
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.42 E-value=1.6e-12 Score=110.57 Aligned_cols=149 Identities=15% Similarity=0.276 Sum_probs=121.7
Q ss_pred cEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC
Q 021160 94 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC 173 (316)
Q Consensus 94 ~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 173 (316)
.|..++|.|||..|+.+.+..+.+||...+ ..++++++|.+. |.+++| +.+|+.+++|+.|
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG----------------~llqtLKgHKDt--VycVAy-s~dGkrFASG~aD 74 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDG----------------TLLQPLKGHKDT--VYCVAY-AKDGKRFASGSAD 74 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCc----------------ccccccccccce--EEEEEE-ccCCceeccCCCc
Confidence 788999999999888888899999999998 789999999976 999999 9999999999999
Q ss_pred CeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEE
Q 021160 174 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT 253 (316)
Q Consensus 174 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 253 (316)
..|.+|..+-.-.+ . ..|...|.|+.|+|-...|++++-. ..-+|....+.+.... ....+..+. |..|+.+++-
T Consensus 75 K~VI~W~~klEG~L-k-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~k-ss~R~~~Cs-WtnDGqylal 149 (1081)
T KOG1538|consen 75 KSVIIWTSKLEGIL-K-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHK-SSSRIICCS-WTNDGQYLAL 149 (1081)
T ss_pred eeEEEeccccccee-e-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhh-hheeEEEee-ecCCCcEEEE
Confidence 99999986532211 2 2589999999999999899999853 5678988776543332 223344444 8899999999
Q ss_pred ecCCCeEEEEEec
Q 021160 254 LTPDVIMHVLRLQ 266 (316)
Q Consensus 254 ~~~d~~~~~w~~~ 266 (316)
|-.+|+|.+-+-.
T Consensus 150 G~~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 150 GMFNGTISIRNKN 162 (1081)
T ss_pred eccCceEEeecCC
Confidence 9999999988643
No 230
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.6e-12 Score=108.00 Aligned_cols=162 Identities=14% Similarity=0.132 Sum_probs=120.2
Q ss_pred cccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCccee-eCCcCCceeeeEEEecC-
Q 021160 86 HLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-SGHRNSQTVKGVNFFGP- 162 (316)
Q Consensus 86 ~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~- 162 (316)
..+.+|.+-|.+++|+.+|.+|++| .|-.+.|||.-.. +++..+ .+|... |.++.|.+.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~----------------KllhsI~TgHtaN--IFsvKFvP~t 105 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY----------------KLLHSISTGHTAN--IFSVKFVPYT 105 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhc----------------ceeeeeecccccc--eeEEeeeccC
Confidence 3348999999999999999999997 5778999998765 555554 478866 999999533
Q ss_pred CCcEEEEeccCCeEEEEeccCC----------eeEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCCCC--
Q 021160 163 NDEYVMSGSDCGHLFIWKKKGG----------KLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDFP-- 229 (316)
Q Consensus 163 ~~~~l~~~~~dg~v~~wd~~~~----------~~~~~~~~~~~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~~~-- 229 (316)
+.+.+++|..|..|+++|+... .....+..|...|..++-.|+++ .+.++++||+|+-+|++.....
T Consensus 106 nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 106 NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence 3567889999999999998742 23444567889999999999995 4889999999999999874311
Q ss_pred C------CC---CCcccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160 230 P------LP---DNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 265 (316)
Q Consensus 230 ~------~~---~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~ 265 (316)
. +. ...-....+...+.+..+++.|+.|--.+++|.
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 1 11 111112233323346778888999988888884
No 231
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.41 E-value=2.7e-11 Score=101.58 Aligned_cols=190 Identities=13% Similarity=0.117 Sum_probs=139.8
Q ss_pred CcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEE------cc-------------CCC-e
Q 021160 47 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY------SN-------------TSE-L 106 (316)
Q Consensus 47 ~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~-------------~~~-~ 106 (316)
..++|....||.+++|+..++++..++..-. .-.+..++..| +| .+. .
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~------------~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~ 72 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIA------------SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSM 72 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccch------------hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceE
Confidence 3799999999999999999887654321111 11222233332 22 122 4
Q ss_pred EEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe
Q 021160 107 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 185 (316)
Q Consensus 107 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~ 185 (316)
++-| ..|.|.+|++..+ +....+.+......|.++.+ +.+-..|.+++.|..+..|+...++
T Consensus 73 lvlgt~~g~v~~ys~~~g----------------~it~~~st~~h~~~v~~~~~-~~~~~ciyS~~ad~~v~~~~~~~~~ 135 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGG----------------EITAKLSTDKHYGNVNEILD-AQRLGCIYSVGADLKVVYILEKEKV 135 (541)
T ss_pred EEeecCCccEEEEEecCC----------------eEEEEEecCCCCCcceeeec-ccccCceEecCCceeEEEEecccce
Confidence 4545 6899999999888 56666664333344999987 7888899999999999999999999
Q ss_pred eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCC----CCceeEE-ecCCCe
Q 021160 186 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGR----EDHSRIT-LTPDVI 259 (316)
Q Consensus 186 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~s-~~~d~~ 259 (316)
.++........+.+++.+||++++++++ +.|++||+++++ +.++++|..++.....-.. .+.++++ ...+..
T Consensus 136 ~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~ 213 (541)
T KOG4547|consen 136 IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG 213 (541)
T ss_pred eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence 9999998888999999999999999997 799999999998 8899999998866552221 2455554 344566
Q ss_pred EEEEEecc
Q 021160 260 MHVLRLQR 267 (316)
Q Consensus 260 ~~~w~~~~ 267 (316)
+-+|-+..
T Consensus 214 i~~w~v~~ 221 (541)
T KOG4547|consen 214 ITVWVVEK 221 (541)
T ss_pred eeEEEEEc
Confidence 67776654
No 232
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=8.1e-12 Score=102.42 Aligned_cols=243 Identities=11% Similarity=0.074 Sum_probs=166.7
Q ss_pred CCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC--CeE
Q 021160 30 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELL 107 (316)
Q Consensus 30 ~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l 107 (316)
..+|.+.|+.+.|+..| ..+++|+.|..|.+||...++ .......+|...|....|-|.. .-+
T Consensus 138 L~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~--------------~~l~f~SGH~~NvfQaKFiP~s~d~ti 202 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGS--------------PKLSFESGHCNNVFQAKFIPFSGDRTI 202 (559)
T ss_pred ccCCCCccceeeecccC-ceeeccCccceEEeehhhccC--------------cccccccccccchhhhhccCCCCCcCc
Confidence 34799999999999999 899999999999999998776 3444458899999999998864 345
Q ss_pred EE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee
Q 021160 108 IS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 186 (316)
Q Consensus 108 ~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~ 186 (316)
++ +.||++++=.+.... .......+..|.+. |.-++.-+.....|.+++.|+.++-+|++.+.+
T Consensus 203 ~~~s~dgqvr~s~i~~t~-------------~~e~t~rl~~h~g~--vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p 267 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETG-------------YVENTKRLAPHEGP--VHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP 267 (559)
T ss_pred eeccccCceeeeeecccc-------------ceecceecccccCc--cceeeecCCCCCcccccccccceeeeeeccCCc
Confidence 55 689999987664321 00223445566655 766766344566789999999999999987765
Q ss_pred EEEee---cCcc---ceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCCC-------CCCCCC----ccc-ceeeeecCCC
Q 021160 187 VRLMV---GDRH---VVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF-------PPLPDN----AEK-IMKANKQGRE 247 (316)
Q Consensus 187 ~~~~~---~~~~---~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~~-------~~~~~~----~~~-~~~~~~~~~~ 247 (316)
...+. .+.. ...+++.+|... .+++++.|..+++||.+.-.. ..+..+ ..+ .+..+.++.+
T Consensus 268 a~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~ 347 (559)
T KOG1334|consen 268 AEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD 347 (559)
T ss_pred cceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC
Confidence 44332 2333 567899999877 599999999999999764321 111111 111 1334446655
Q ss_pred CceeEEecCCCeEEEEEecccCc--------------ceeE------------EeecccccccccCCCCeEEEEeccCCC
Q 021160 248 DHSRITLTPDVIMHVLRLQRRQT--------------LAYR------------ERRYNAADFESDEEEGETYLLGFSDSD 301 (316)
Q Consensus 248 ~~~~~s~~~d~~~~~w~~~~~~~--------------~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~ 301 (316)
+.-+++.-.|-.+.+++-..+.. .+|. -+.|...++.++.+-|.||+|+-..+.
T Consensus 348 ~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 348 GSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred ccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH
Confidence 44444445566666664322111 0111 367888999999999999999987765
Q ss_pred C
Q 021160 302 A 302 (316)
Q Consensus 302 ~ 302 (316)
-
T Consensus 428 i 428 (559)
T KOG1334|consen 428 I 428 (559)
T ss_pred H
Confidence 3
No 233
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=2.4e-10 Score=99.18 Aligned_cols=184 Identities=11% Similarity=0.001 Sum_probs=114.0
Q ss_pred CccceEEEEECCCCCcEEEEEecC---CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 109 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~d---g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 109 (316)
+...+...+|+|+| +.|+..+.+ ..|.+|++.+++.. .+ ....+.....+|+|+|+.|+.
T Consensus 197 ~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~~---------------~l-~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 197 SREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRRE---------------QI-TNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred CCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCEE---------------Ec-cCCCCCcCCeEECCCCCEEEE
Confidence 45678899999999 666655432 36888999877521 11 111233446899999986653
Q ss_pred -e-cCC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-C--CeEEEEecc
Q 021160 110 -Y-NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--GHLFIWKKK 182 (316)
Q Consensus 110 -~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d--g~v~~wd~~ 182 (316)
. .++ .|++||+.++ ....+..+... .....| +|+|+.|+..+. + ..|+++++.
T Consensus 260 ~~~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~~~~~-spDg~~i~f~s~~~g~~~iy~~d~~ 319 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASR-----------------QLSRVTNHPAI--DTEPFW-GKDGRTLYFTSDRGGKPQIYKVNVN 319 (430)
T ss_pred EEccCCCceEEEEECCCC-----------------CeEEcccCCCC--cCCeEE-CCCCCEEEEEECCCCCceEEEEECC
Confidence 3 344 6888898876 22334433322 556778 999998876654 3 358888887
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEEeCC-C--cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecC
Q 021160 183 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-K--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTP 256 (316)
Q Consensus 183 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 256 (316)
+++... +...........|+|+++.|+..+.+ + .|.+||+.++....+.... .... ..|+++++.++..+.
T Consensus 320 ~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~-~~~~-p~~spdg~~i~~~~~ 393 (430)
T PRK00178 320 GGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS-LDES-PSVAPNGTMLIYATR 393 (430)
T ss_pred CCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC-CCCC-ceECCCCCEEEEEEe
Confidence 776433 22122233457899999998766543 3 5888999887644443211 1112 236777776665443
No 234
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.40 E-value=1.2e-10 Score=97.84 Aligned_cols=182 Identities=10% Similarity=0.099 Sum_probs=137.2
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEE------CC-------------CCCcEEEEEecCCcEEEE
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVI------DP-------------RNPNYFAVGGSDEYARVY 62 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~------~~-------------~~~~~l~~g~~dg~v~~w 62 (316)
+|.+++||...++....|.-...- .+...+..| +| .+...++-|...|.|.+|
T Consensus 14 ~g~l~iw~t~~~~~~~e~~p~~~~--------s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 14 DGRLRIWDTAKNQLQQEFAPIASL--------SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred CCeEEEEEccCceeeeeeccchhc--------cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 689999999887754443321111 223333333 22 222577888899999999
Q ss_pred eCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCC
Q 021160 63 DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREE 141 (316)
Q Consensus 63 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 141 (316)
++..+++. .+.....|.+.|.++.++.+-..|.+ +.|..+..|+.... ..
T Consensus 86 s~~~g~it-------------~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~----------------~~ 136 (541)
T KOG4547|consen 86 SVAGGEIT-------------AKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK----------------VI 136 (541)
T ss_pred EecCCeEE-------------EEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc----------------ee
Confidence 99988742 12222679999999999887777777 57999999999887 56
Q ss_pred cceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCC-----CCe-EEEEeCC
Q 021160 142 PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH-----IPM-FATCGIE 215 (316)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~-l~s~~~d 215 (316)
...+...... +.+++. +||+..+++++ +.|++||+++++.+..|.+|.++|.+++|--. |.+ |.++..+
T Consensus 137 ~~~~~~~~~~--~~sl~i-s~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 137 IRIWKEQKPL--VSSLCI-SPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred eeeeccCCCc--cceEEE-cCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccc
Confidence 6777766644 899998 99999999886 68999999999999999999999999999876 666 4455567
Q ss_pred CcEEEecCCC
Q 021160 216 KTVKLWAPMP 225 (316)
Q Consensus 216 ~~i~iwd~~~ 225 (316)
..+.+|-+..
T Consensus 212 r~i~~w~v~~ 221 (541)
T KOG4547|consen 212 RGITVWVVEK 221 (541)
T ss_pred cceeEEEEEc
Confidence 7788887654
No 235
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=2.5e-12 Score=119.88 Aligned_cols=189 Identities=14% Similarity=0.212 Sum_probs=144.4
Q ss_pred CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ec
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN 111 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~ 111 (316)
|-..|.++.=+|.. .+.++|+.||.+++|....++ ++. +.+ ......++.+.|+.+|+.+.. -.
T Consensus 2207 ~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~---------~v~--~~r---t~g~s~vtr~~f~~qGnk~~i~d~ 2271 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQ---------QVV--CFR---TAGNSRVTRSRFNHQGNKFGIVDG 2271 (2439)
T ss_pred ccCceeeecCCCCC-ceEEecCCCceEEEEeccCCC---------eEE--Eee---ccCcchhhhhhhcccCCceeeecc
Confidence 34568888889988 699999999999999987665 122 222 222378999999999975555 57
Q ss_pred CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec---cCCeEEEEeccC-C--e
Q 021160 112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKKG-G--K 185 (316)
Q Consensus 112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~v~~wd~~~-~--~ 185 (316)
||.+.+|.... ++......|... ..++.|. +..+++++ +++.+.+||..- + .
T Consensus 2272 dg~l~l~q~~p-----------------k~~~s~qchnk~--~~Df~Fi---~s~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2272 DGDLSLWQASP-----------------KPYTSWQCHNKA--LSDFRFI---GSLLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred CCceeecccCC-----------------cceeccccCCcc--ccceeee---ehhhhccccCCCCCcccchhcccCcccc
Confidence 99999999874 466667777744 8888883 35666653 588999999542 2 2
Q ss_pred eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160 186 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 264 (316)
Q Consensus 186 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~ 264 (316)
++. ..|.+.++++++-|..+.|++||.+|.|++||++..+ +++++. +. ...++++++..|.+++|+
T Consensus 2330 ~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2330 LVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred eee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEE
Confidence 333 6899999999999999999999999999999999877 444432 22 456899999999999999
Q ss_pred ecccCcc
Q 021160 265 LQRRQTL 271 (316)
Q Consensus 265 ~~~~~~~ 271 (316)
+.....+
T Consensus 2397 ~s~~~ll 2403 (2439)
T KOG1064|consen 2397 LSEFGLL 2403 (2439)
T ss_pred ccccchh
Confidence 9887544
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=8.2e-11 Score=101.65 Aligned_cols=179 Identities=11% Similarity=0.039 Sum_probs=107.9
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCc--CCcccCCCCCCCCcee
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR--KCHWYSPISSDTPVDT 81 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~--~~~~~~~~~~~~~~~~ 81 (316)
.|.+||+.+.+...+.. ..+.+.+.+|+|++..++++.+.++...||.++ .+.
T Consensus 221 ~I~~~dl~~g~~~~l~~------------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~------------- 275 (427)
T PRK02889 221 VVYVHDLATGRRRVVAN------------FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG------------- 275 (427)
T ss_pred EEEEEECCCCCEEEeec------------CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-------------
Confidence 58888987765533321 123456899999994444567788887777654 332
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEE-e-cCCcEEEEEc--CCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEK--NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 157 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 157 (316)
...+ ..+........|+|+|+.++. + .++...+|.+ .++ ....+...... ....
T Consensus 276 --~~~l-t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g-----------------~~~~lt~~g~~--~~~~ 333 (427)
T PRK02889 276 --LRRL-TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG-----------------AAQRVTFTGSY--NTSP 333 (427)
T ss_pred --cEEC-CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC-----------------ceEEEecCCCC--cCce
Confidence 1111 223344566789999986654 3 2455566654 333 12222212211 4456
Q ss_pred EEecCCCcEEEEeccCC---eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEecCCCCCCCCC
Q 021160 158 NFFGPNDEYVMSGSDCG---HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPL 231 (316)
Q Consensus 158 ~~~~~~~~~l~~~~~dg---~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~---~i~iwd~~~~~~~~~ 231 (316)
+| +|+|++|+..+.++ .|++||+.+++... +... .......|+|+++.|+.++.++ .+.+.++.......+
T Consensus 334 ~~-SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l 410 (427)
T PRK02889 334 RI-SPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRL 410 (427)
T ss_pred EE-CCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEe
Confidence 77 99999998776554 69999998877543 3322 2346789999999977766444 355555644333334
Q ss_pred C
Q 021160 232 P 232 (316)
Q Consensus 232 ~ 232 (316)
.
T Consensus 411 ~ 411 (427)
T PRK02889 411 S 411 (427)
T ss_pred e
Confidence 3
No 237
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=2.4e-11 Score=108.12 Aligned_cols=147 Identities=16% Similarity=0.152 Sum_probs=120.9
Q ss_pred ECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEc
Q 021160 42 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEK 120 (316)
Q Consensus 42 ~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~ 120 (316)
++++. -++++|+.-+.|.+|+....+ ......+|.+.|..+.|+.+|+++++ +.|.++++|++
T Consensus 141 ~s~~~-~~i~~gsv~~~iivW~~~~dn---------------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i 204 (967)
T KOG0974|consen 141 DSAEE-LYIASGSVFGEIIVWKPHEDN---------------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPI 204 (967)
T ss_pred ccCcE-EEEEeccccccEEEEeccccC---------------CcceecccCCceEEEEEccCCcEEEEEecCcceeeeec
Confidence 45555 799999999999999987322 11134899999999999999999999 57999999999
Q ss_pred CCCCCCCCccCCccccccCCCcc-eeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCc-cceE
Q 021160 121 NMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVN 198 (316)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~-~~v~ 198 (316)
++. +... ..-+|+.. +..++| .|+ .++++++|-+.++|+.. ++.+..+..|. ..+.
T Consensus 205 ~s~----------------~~~~~~~fgHsaR--vw~~~~-~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw 262 (967)
T KOG0974|consen 205 DSR----------------EVLGCTGFGHSAR--VWACCF-LPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIW 262 (967)
T ss_pred ccc----------------cccCcccccccce--eEEEEe-ccc--eeEEeccceEEEEEecc-cceehhhhhhhhccee
Confidence 987 3333 55678866 999998 666 99999999999999776 55566777776 5789
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160 199 QLEPHPHIPMFATCGIEKTVKLWAPMPT 226 (316)
Q Consensus 199 ~~~~~p~~~~l~s~~~d~~i~iwd~~~~ 226 (316)
.++.+++...++|++.|+.+++|++...
T Consensus 263 ~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 263 KIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9999999999999999999999997643
No 238
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=2.2e-11 Score=101.87 Aligned_cols=168 Identities=16% Similarity=0.212 Sum_probs=123.7
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 112 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 112 (316)
.++++++..++.. .+|++|+.+|.|..||.++......+.....|... ........|++++|+.+|-.++.| ++
T Consensus 175 ~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~----pg~~~~~svTal~F~d~gL~~aVGts~ 249 (703)
T KOG2321|consen 175 SGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSH----PGGDAAPSVTALKFRDDGLHVAVGTST 249 (703)
T ss_pred cccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccCCC----ccccccCcceEEEecCCceeEEeeccC
Confidence 4689999999988 79999999999999999987643332211111110 001123359999999999766665 89
Q ss_pred CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec
Q 021160 113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 192 (316)
Q Consensus 113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~ 192 (316)
|.++|||++.. ++ .....|...-+|..+.|...+++--+...+...++|||-.+|+....+..
T Consensus 250 G~v~iyDLRa~----------------~p-l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 250 GSVLIYDLRAS----------------KP-LLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred CcEEEEEcccC----------------Cc-eeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc
Confidence 99999999987 33 34556766666899998544444444555678899999999999888764
Q ss_pred CccceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 021160 193 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 224 (316)
Q Consensus 193 ~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~ 224 (316)
...++.+|+-|++-++++|..+..+..|=+.
T Consensus 313 -t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 313 -TSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred -cCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 4569999999999999999988877766543
No 239
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.36 E-value=4.7e-11 Score=94.00 Aligned_cols=209 Identities=17% Similarity=0.178 Sum_probs=145.5
Q ss_pred cCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCc-CCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeE
Q 021160 29 KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 107 (316)
Q Consensus 29 ~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 107 (316)
+..||...|++...-|.. .-+++.+.|.++++|--+ .++ ..+.+......+++++.+.++...|
T Consensus 19 ~~eG~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q--------------~wpsI~~~mP~~~~~~~y~~e~~~L 83 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQ--------------YWPSIYHYMPSPCSAMEYVSESRRL 83 (404)
T ss_pred hhcCchhhhhhheeccCC-CCeEEccccceeeeEEeccccc--------------cCchhhhhCCCCceEeeeeccceEE
Confidence 345889999999998877 689999999999999754 343 2222323446789999999998877
Q ss_pred EEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEE---------
Q 021160 108 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF--------- 177 (316)
Q Consensus 108 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~--------- 177 (316)
+.+ ..|++.-+.+..- +++....+.+..|... +..+-| +....++++.+.|..+.
T Consensus 84 ~vg~~ngtvtefs~sed------------fnkm~~~r~~~~h~~~--v~~~if-~~~~e~V~s~~~dk~~~~hc~e~~~~ 148 (404)
T KOG1409|consen 84 YVGQDNGTVTEFALSED------------FNKMTFLKDYLAHQAR--VSAIVF-SLTHEWVLSTGKDKQFAWHCTESGNR 148 (404)
T ss_pred EEEEecceEEEEEhhhh------------hhhcchhhhhhhhhcc--eeeEEe-cCCceeEEEeccccceEEEeeccCCc
Confidence 776 6888888876432 2222344555555544 555555 44444454444443321
Q ss_pred ------------------------------EEe--ccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160 178 ------------------------------IWK--KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 225 (316)
Q Consensus 178 ------------------------------~wd--~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~ 225 (316)
.-. ...-.++.++.+|.+.+.+++|.|....+.+|..|..+.+||+-.
T Consensus 149 lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg 228 (404)
T KOG1409|consen 149 LGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGG 228 (404)
T ss_pred ccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccC
Confidence 111 112234557788999999999999999999999999999999977
Q ss_pred CC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 226 TD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 226 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
.+ ...+.+|.+.+.... ...--..+++++.||.|.+|+++..
T Consensus 229 ~~g~~~el~gh~~kV~~l~-~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 229 RKGTAYELQGHNDKVQALS-YAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred Ccceeeeeccchhhhhhhh-hhhhheeeeeccCCCeEEEEeccce
Confidence 65 566777777663332 3344568899999999999998643
No 240
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=2.3e-10 Score=100.29 Aligned_cols=205 Identities=14% Similarity=0.197 Sum_probs=144.5
Q ss_pred EEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEE
Q 021160 38 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVY 116 (316)
Q Consensus 38 ~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~ 116 (316)
.++.+++.+ .+.+.. .+..+.+|+..++. +..+.......|.-.+++.+++|.+++++++ .||+|.
T Consensus 164 ~~I~~~~~g-e~~~i~-~~~~~~~~~v~~~~-----------~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~ 230 (792)
T KOG1963|consen 164 KSIVDNNSG-EFKGIV-HMCKIHIYFVPKHT-----------KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRIL 230 (792)
T ss_pred ccEEEcCCc-eEEEEE-EeeeEEEEEecccc-----------eeeccchhhhhhcccceeEEeccccceEEEeccCCcEE
Confidence 456667766 444443 45668888887643 1223444445677779999999999999997 699999
Q ss_pred EEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccc
Q 021160 117 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV 196 (316)
Q Consensus 117 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~ 196 (316)
+|.--... . .....+.+.=|.++ |.+++| +++|.+|++|+..+.+.+|.+.+++ .+.++.-.++
T Consensus 231 vw~d~~~~-----------~-~~~t~t~lHWH~~~--V~~L~f-S~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~ 294 (792)
T KOG1963|consen 231 VWRDFGSS-----------D-DSETCTLLHWHHDE--VNSLSF-SSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSP 294 (792)
T ss_pred EEeccccc-----------c-ccccceEEEecccc--cceeEE-ecCCceEeecccceEEEEEeecCCC-cccccccCCe
Confidence 99743310 0 00233556666656 999999 9999999999999999999999988 5556656789
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEecCCCCC----CCCCCCC-------cccceeeeecCCCCceeEEecCCCeEEEEEe
Q 021160 197 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----FPPLPDN-------AEKIMKANKQGREDHSRITLTPDVIMHVLRL 265 (316)
Q Consensus 197 v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~ 265 (316)
|..+.++||+.+.+....|+.|.+-...... +..+... ...........+..+.++-.+..+.++++|+
T Consensus 295 I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 295 ILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL 374 (792)
T ss_pred eEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence 9999999999998888899999998765433 2222211 1222233334444556777788899999998
Q ss_pred cccCcc
Q 021160 266 QRRQTL 271 (316)
Q Consensus 266 ~~~~~~ 271 (316)
.+....
T Consensus 375 ~td~~i 380 (792)
T KOG1963|consen 375 YTDSTI 380 (792)
T ss_pred ccccee
Confidence 876444
No 241
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=3.9e-10 Score=97.08 Aligned_cols=203 Identities=10% Similarity=0.020 Sum_probs=116.1
Q ss_pred ccceEEEEECCCCCc--EEEEEecC--CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160 34 SIRLNAIVIDPRNPN--YFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 109 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~--~l~~g~~d--g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 109 (316)
...+.+-+|+|+|.. ++++...+ ..|.+.++.+++.. .+ ..........+|+|||+.|+.
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-------~l---------t~~~g~~~~p~wSPDG~~Laf 247 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-------KI---------LALQGNQLMPTFSPRKKLLAF 247 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-------Ee---------ecCCCCccceEECCCCCEEEE
Confidence 345667899999843 22244333 45777788766511 11 112333456899999986665
Q ss_pred ec--CC----cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec-cCCeEEEE--e
Q 021160 110 YN--DE----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIW--K 180 (316)
Q Consensus 110 ~~--d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~~w--d 180 (316)
.. ++ .+.+|++..+. .....+...+.... ....+| +|+|+.|+..+ .+|...+| +
T Consensus 248 ~s~~~g~~di~~~~~~~~~g~-------------~g~~~~lt~~~~~~--~~~p~w-SPDG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 248 ISDRYGNPDLFIQSFSLETGA-------------IGKPRRLLNEAFGT--QGNPSF-SPDGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred EECCCCCcceeEEEeecccCC-------------CCcceEeecCCCCC--cCCeEE-CCCCCEEEEEECCCCCceEEEEE
Confidence 32 22 23446665420 00122222222221 456788 99999887765 35644444 4
Q ss_pred ccC-CeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEE-ec
Q 021160 181 KKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT-LT 255 (316)
Q Consensus 181 ~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~ 255 (316)
+.. +.....+..+...+....|+|+|+.|+..+.+ ..|.+||+.+++...+......... ..|+++++.++. ..
T Consensus 312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~-p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKES-PSWAIDSLHLVYSAG 390 (428)
T ss_pred CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccc-eEECCCCCEEEEEEC
Confidence 432 23344454444566789999999998766543 3699999998875555433222223 347788776654 33
Q ss_pred C--CCeEEEEEecccC
Q 021160 256 P--DVIMHVLRLQRRQ 269 (316)
Q Consensus 256 ~--d~~~~~w~~~~~~ 269 (316)
. ...+.++++..++
T Consensus 391 ~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 391 NSNESELYLISLITKK 406 (428)
T ss_pred CCCCceEEEEECCCCC
Confidence 2 3556667766553
No 242
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.33 E-value=6.5e-12 Score=107.99 Aligned_cols=205 Identities=15% Similarity=0.212 Sum_probs=148.0
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEEE
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS 109 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s 109 (316)
.||..+|+.+.|+|+.+..+++++-|..+..||+++.. .|+..+ ..-...-..++|+... ..+|+
T Consensus 111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--------~p~ys~------~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--------RPFYST------SSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred ecCccceeccccCCCCCcceeeccccccceeeeccCCC--------cceeee------ecccccCceeeecccCcchhhh
Confidence 37999999999999999999999999999999999764 333333 2223455688998754 58888
Q ss_pred ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee--E
Q 021160 110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL--V 187 (316)
Q Consensus 110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~--~ 187 (316)
+....|.+||++.+. .++..+++|... +..++|.......+.+.+.|++|++||...... .
T Consensus 177 shg~~i~vwd~r~gs---------------~pl~s~K~~vs~--vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~ 239 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGS---------------TPLCSLKGHVSS--VNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK 239 (1081)
T ss_pred ccCCceEEEeccCCC---------------cceEEeccccee--eehHHHhhhhhhhhcccCCCCceeeecccccccccc
Confidence 888899999999884 577788888765 899988666677889999999999999764322 1
Q ss_pred EEeecCccceEEEEEcCCCCe--EEEEeCCCcEEEec---------CCCCC--CCCCCCCcccceeeeecCCC-------
Q 021160 188 RLMVGDRHVVNQLEPHPHIPM--FATCGIEKTVKLWA---------PMPTD--FPPLPDNAEKIMKANKQGRE------- 247 (316)
Q Consensus 188 ~~~~~~~~~v~~~~~~p~~~~--l~s~~~d~~i~iwd---------~~~~~--~~~~~~~~~~~~~~~~~~~~------- 247 (316)
+.. ....+|..-.+-|-|.- +.-.-.+..+.+++ ...+. ++++.+|.+.+....|....
T Consensus 240 ~~v-tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d 318 (1081)
T KOG0309|consen 240 RTV-TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYD 318 (1081)
T ss_pred eec-cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCC
Confidence 222 23346666666664432 22111223444443 33332 77888999999888866541
Q ss_pred --CceeEEecCCCeEEEEEecc
Q 021160 248 --DHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 248 --~~~~~s~~~d~~~~~w~~~~ 267 (316)
.-.+++-+.|..+++|.+..
T Consensus 319 ~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 319 SRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccceeEEEeecCCceEeeeccH
Confidence 34799999999999998764
No 243
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.31 E-value=1e-09 Score=99.65 Aligned_cols=201 Identities=13% Similarity=0.140 Sum_probs=120.3
Q ss_pred ceeeEEEEeeCCCcc-eEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCC-------
Q 021160 2 VLFNMLFDLRSDSAT-RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI------- 73 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~-~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~------- 73 (316)
+|+|++||++.-... ..++.. ...+.-...+.++...+.+ ..+|+++.||.|++.+++........
T Consensus 1070 DGtVKvW~~~k~~~~~~s~rS~-----ltys~~~sr~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~ 1143 (1431)
T KOG1240|consen 1070 DGTVKVWNLRKLEGEGGSARSE-----LTYSPEGSRVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIP 1143 (1431)
T ss_pred CceEEEeeehhhhcCcceeeee-----EEEeccCCceEEEEeccCC-CeEEEEcCCCeEEEEEccccccccceeeeeecc
Confidence 799999999864332 111110 0000125678999999988 89999999999999999752211100
Q ss_pred C--CCCCceecc------------------------ccc------c-cCCCcccEEEEEEccCCCeEEEe-cCCcEEEEE
Q 021160 74 S--SDTPVDTFC------------------------PRH------L-IGKNNIHITGLAYSNTSELLISY-NDELVYLFE 119 (316)
Q Consensus 74 ~--~~~~~~~~~------------------------~~~------~-~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd 119 (316)
+ ....+-... ... + ..-..+.|++++.+|.+..++.| +.|.+.+||
T Consensus 1144 n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWD 1223 (1431)
T KOG1240|consen 1144 NLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWD 1223 (1431)
T ss_pred cccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEE
Confidence 0 011110000 000 0 01124579999999999988886 799999999
Q ss_pred cCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe--cCCCcEEEEec--cCCeEEEEeccCCeeEEEeecCc-
Q 021160 120 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF--GPNDEYVMSGS--DCGHLFIWKKKGGKLVRLMVGDR- 194 (316)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~--~dg~v~~wd~~~~~~~~~~~~~~- 194 (316)
++-+ .++..+. |.....+..+..+ .+.....++++ ..+.|-+|++.+|.+...+....
T Consensus 1224 LRF~----------------~~i~sw~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~ 1286 (1431)
T KOG1240|consen 1224 LRFR----------------VPILSWE-HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDG 1286 (1431)
T ss_pred eecC----------------ceeeccc-CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCC
Confidence 9866 3433333 1111235555542 33334555544 47889999999887665553220
Q ss_pred ------------------cceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160 195 ------------------HVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 225 (316)
Q Consensus 195 ------------------~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~ 225 (316)
-......+..-+..+.+|+.|..||.||...
T Consensus 1287 ~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1287 APILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred CcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 0111223333456788999999999999764
No 244
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=2.3e-11 Score=95.75 Aligned_cols=228 Identities=15% Similarity=0.169 Sum_probs=150.9
Q ss_pred ccceEEEEECCCC-CcEEEEEecCCcEEEEeCcCCcccCC---------------------CCCCCCceecccccccCCC
Q 021160 34 SIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSP---------------------ISSDTPVDTFCPRHLIGKN 91 (316)
Q Consensus 34 ~~~v~~~~~~~~~-~~~l~~g~~dg~v~~wd~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~ 91 (316)
...|+.+.|.+++ ...++..+.|.+|++|-+........ -.....+...+.+....+|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 4568999998764 24677788999999999875443220 0011223334445555789
Q ss_pred cccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec
Q 021160 92 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 171 (316)
Q Consensus 92 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 171 (316)
...|.++.++.|.+.++++.|-.|.+|+++-. ..++.+-+++.. .+..-+ ..|++..|++...+.++-.+
T Consensus 164 tyhiNSIS~NsD~Et~lSADdLRINLWnlei~----d~sFnIVDIKP~----nmEeLt--eVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSADDLRINLWNLEII----DQSFNIVDIKPA----NMEELT--EVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred eeEeeeeeecCccceEeeccceeeeecccccc----CCceeEEEcccc----CHHHHH--HHHhhhccCHhHccEEEEec
Confidence 99999999999999999999999999999754 222222222111 011111 12788888555677888888
Q ss_pred cCCeEEEEeccCCeeEE----Eee------------cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCC
Q 021160 172 DCGHLFIWKKKGGKLVR----LMV------------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPD 233 (316)
Q Consensus 172 ~dg~v~~wd~~~~~~~~----~~~------------~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~ 233 (316)
..|+|++.|++...+.- .+. .--..|..+.|+++|+++++-.. -+|++||+.... +.+.+-
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v 312 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV 312 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee
Confidence 99999999998543211 111 11236888999999999988653 589999985432 333332
Q ss_pred Cc------------ccc---eeeeecCCCCceeEEecCCCeEEEEEecccCccee
Q 021160 234 NA------------EKI---MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY 273 (316)
Q Consensus 234 ~~------------~~~---~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~ 273 (316)
|. +.+ ..+. |+.++...++|+....++++++.++.....
T Consensus 313 h~~lr~kLc~lYEnD~IfdKFec~-~sg~~~~v~TGsy~n~frvf~~~~gsk~d~ 366 (433)
T KOG1354|consen 313 HEYLRSKLCSLYENDAIFDKFECS-WSGNDSYVMTGSYNNVFRVFNLARGSKEDF 366 (433)
T ss_pred hHhHHHHHHHHhhccchhheeEEE-EcCCcceEecccccceEEEecCCCCcceee
Confidence 21 222 2233 666778999999999999999776654433
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=2.7e-09 Score=92.61 Aligned_cols=182 Identities=12% Similarity=-0.009 Sum_probs=108.4
Q ss_pred ccceEEEEECCCCCcEEEEEec-CC--cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGS-DE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS- 109 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~-dg--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s- 109 (316)
...+.+..|+|+| +.|+..+. ++ .|.+||+.+++.. .. ..........+|+|+|+.|+.
T Consensus 217 ~~~~~~p~wSPDG-~~La~~s~~~g~~~L~~~dl~tg~~~------------~l----t~~~g~~~~~~wSPDG~~La~~ 279 (448)
T PRK04792 217 PEPLMSPAWSPDG-RKLAYVSFENRKAEIFVQDIYTQVRE------------KV----TSFPGINGAPRFSPDGKKLALV 279 (448)
T ss_pred CCcccCceECCCC-CEEEEEEecCCCcEEEEEECCCCCeE------------Ee----cCCCCCcCCeeECCCCCEEEEE
Confidence 5578899999999 66665543 33 5888898876521 01 111122346799999996554
Q ss_pred -ecCCc--EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-C--CeEEEEeccC
Q 021160 110 -YNDEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--GHLFIWKKKG 183 (316)
Q Consensus 110 -~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d--g~v~~wd~~~ 183 (316)
..++. |+++|+.++ ....+..+... ....+| +|+++.|+..+. + ..|+++|+.+
T Consensus 280 ~~~~g~~~Iy~~dl~tg-----------------~~~~lt~~~~~--~~~p~w-SpDG~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 280 LSKDGQPEIYVVDIATK-----------------ALTRITRHRAI--DTEPSW-HPDGKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred EeCCCCeEEEEEECCCC-----------------CeEECccCCCC--ccceEE-CCCCCEEEEEECCCCCceEEEEECCC
Confidence 34554 788888765 23333333322 567788 999998876654 3 3577778877
Q ss_pred CeeEEEeecCccceEEEEEcCCCCeEEEEeC-CC--cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEec
Q 021160 184 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT 255 (316)
Q Consensus 184 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 255 (316)
++... +..........+|+|++++|+..+. ++ .|.++|+.++....+..... .... .|+++++.++..+
T Consensus 340 g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~-d~~p-s~spdG~~I~~~~ 411 (448)
T PRK04792 340 GKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRL-DESP-SVAPNGTMVIYST 411 (448)
T ss_pred CCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCC-CCCc-eECCCCCEEEEEE
Confidence 76433 3222223345789999999776554 34 45557877776443332211 1111 3677776655433
No 246
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.29 E-value=6.8e-10 Score=85.79 Aligned_cols=234 Identities=10% Similarity=0.021 Sum_probs=141.9
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECC---CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCC
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP---RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP 78 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~---~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~ 78 (316)
.|.+.++++...+..+.-..... -...+..+.|.. ++.-.++-+-.+|.|.++.......... -++
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~--------dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~---L~~ 113 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCT--------DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH---LRG 113 (339)
T ss_pred ccceEEEeecccccCccceeeee--------cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee---ecc
Confidence 47788888887765542211111 134566677753 3322566677789999988764331100 011
Q ss_pred ceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160 79 VDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 157 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 157 (316)
+... .-......++.|++.+..++++ ++|.+.+-+.... ..+.++.++.|.-+ ++-.
T Consensus 114 ls~~------ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~--------------~le~vq~wk~He~E--~Wta 171 (339)
T KOG0280|consen 114 LSSK------KISVVEALSLDISTSGTKIFVSDSRGSISGVYETEM--------------VLEKVQTWKVHEFE--AWTA 171 (339)
T ss_pred cchh------hhhheeeeEEEeeccCceEEEEcCCCcEEEEeccee--------------eeeeccccccccee--eeee
Confidence 1100 0001135578889888766665 7888885554433 11345578888876 8888
Q ss_pred EEecCCCcEEEEeccCCeEEEEecc-CCeeEEE-eecCccceEEEEEcCC-CCeEEEEeCCCcEEEecCCCCCCCCC-CC
Q 021160 158 NFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVRL-MVGDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTDFPPL-PD 233 (316)
Q Consensus 158 ~~~~~~~~~l~~~~~dg~v~~wd~~-~~~~~~~-~~~~~~~v~~~~~~p~-~~~l~s~~~d~~i~iwd~~~~~~~~~-~~ 233 (316)
.|...+.+++.+|++|+.+..||++ .++.+.. .+-|...|.++.-+|. ..+++||+.|-.|++||.+......+ ..
T Consensus 172 ~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~ 251 (339)
T KOG0280|consen 172 KFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK 251 (339)
T ss_pred ecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc
Confidence 8866677899999999999999998 4454444 4568889999988875 55699999999999999985432111 12
Q ss_pred CcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 234 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
....+..+.+.+.....++..+.-.-.++.+.+.+
T Consensus 252 v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 252 VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred cccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 33555555533333223333333333455555443
No 247
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=3.2e-10 Score=97.67 Aligned_cols=221 Identities=11% Similarity=0.121 Sum_probs=154.9
Q ss_pred CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 111 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 111 (316)
......+++|+... .++|+|+.||.+++..+.+.......+.-....++...+...+|...|.-+.|+.+.+.|.++ .
T Consensus 13 nnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 35678999999987 899999999999999887654211111112334445556668999999999999988888886 6
Q ss_pred CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEE--E
Q 021160 112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--L 189 (316)
Q Consensus 112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~--~ 189 (316)
+|.|.+|-+-.+ .-...+....+...|.+++| ..+|..|+..-.||.|.+=.+.. ..+. .
T Consensus 92 ~GlIiVWmlykg----------------sW~EEMiNnRnKSvV~SmsW-n~dG~kIcIvYeDGavIVGsvdG-NRIwgKe 153 (1189)
T KOG2041|consen 92 SGLIIVWMLYKG----------------SWCEEMINNRNKSVVVSMSW-NLDGTKICIVYEDGAVIVGSVDG-NRIWGKE 153 (1189)
T ss_pred CceEEEEeeecc----------------cHHHHHhhCcCccEEEEEEE-cCCCcEEEEEEccCCEEEEeecc-ceecchh
Confidence 999999999877 34444555555566999999 89999999999999998777663 3332 2
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC------------CCCcccceeeeec-------CCCCce
Q 021160 190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL------------PDNAEKIMKANKQ-------GREDHS 250 (316)
Q Consensus 190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~------------~~~~~~~~~~~~~-------~~~~~~ 250 (316)
+++ .....+.|++|.+.++.+-..|.+.+||.+......+ ......+....|. .|+...
T Consensus 154 Lkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~ 231 (1189)
T KOG2041|consen 154 LKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR 231 (1189)
T ss_pred cch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE
Confidence 222 2334688999999877777789999999775421111 1111123233332 335667
Q ss_pred eEEecCCCeEEEEEecccCcceeE
Q 021160 251 RITLTPDVIMHVLRLQRRQTLAYR 274 (316)
Q Consensus 251 ~~s~~~d~~~~~w~~~~~~~~~~~ 274 (316)
++.+-..|.+++.+-.+...++..
T Consensus 232 lavcy~nGr~QiMR~eND~~Pvv~ 255 (1189)
T KOG2041|consen 232 LAVCYANGRMQIMRSENDPEPVVV 255 (1189)
T ss_pred EEEEEcCceehhhhhcCCCCCeEE
Confidence 788888899998887666565554
No 248
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.29 E-value=1.1e-09 Score=92.04 Aligned_cols=181 Identities=11% Similarity=0.088 Sum_probs=117.0
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.|.|.|.|..+.+....+... ...-..+.|+|++ +++++.+.||.|.++|+.+.+.
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~-----------~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~------------ 70 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTG-----------GAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKV------------ 70 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-S-----------TTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSE------------
T ss_pred CCEEEEEECCCCeEEEEEcCC-----------CCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccE------------
Confidence 478999998887776666542 1122457899999 8888889999999999998873
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC-----Ccee
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-----SQTV 154 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i 154 (316)
...+.. ......++++++|++++.+ .++.+.++|.++. ++++.+..... ...+
T Consensus 71 --v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl----------------e~v~~I~~~~~~~~~~~~Rv 130 (369)
T PF02239_consen 71 --VATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL----------------EPVKTIPTGGMPVDGPESRV 130 (369)
T ss_dssp --EEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT------------------EEEEEE--EE-TTTS---E
T ss_pred --EEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEeccccc----------------cceeecccccccccccCCCc
Confidence 222212 2345789999999977764 5999999999887 56666553321 1226
Q ss_pred eeEEEecCCCc-EEEEeccCCeEEEEeccCCeeEE-EeecCccceEEEEEcCCCCeEEE-EeCCCcEEEecCCCCC
Q 021160 155 KGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPHIPMFAT-CGIEKTVKLWAPMPTD 227 (316)
Q Consensus 155 ~~~~~~~~~~~-~l~~~~~dg~v~~wd~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~s-~~~d~~i~iwd~~~~~ 227 (316)
..+.. ++... ++++--+.+.|.+.|....+.+. ....-........|+|++++++. ...+..|-++|..+++
T Consensus 131 ~aIv~-s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 131 AAIVA-SPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp EEEEE--SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred eeEEe-cCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence 66665 66666 55666667899999977654332 22223345678999999998654 4567789999988775
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.24 E-value=1.6e-09 Score=93.90 Aligned_cols=176 Identities=12% Similarity=0.059 Sum_probs=109.2
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCC--cEEEEeCcCCcccCCCCCCCCce
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg--~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
..|++||+.+.+...+.. +.+.+.+++|+|++..++++.+.++ .|.+|++.+++..
T Consensus 214 ~~i~v~d~~~g~~~~~~~------------~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~---------- 271 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS------------FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT---------- 271 (417)
T ss_pred cEEEEEECCCCCEEEeec------------CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----------
Confidence 368888887664432221 2345667899999943444555544 5888888866421
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEE-ec-CC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG 156 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 156 (316)
.+ ..+........|+|+|+.|+. +. ++ .|+++|+.++ + ...+..+... ...
T Consensus 272 -----~l-~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~----------------~-~~~l~~~~~~--~~~ 326 (417)
T TIGR02800 272 -----RL-TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG----------------E-VRRLTFRGGY--NAS 326 (417)
T ss_pred -----EC-CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC----------------C-EEEeecCCCC--ccC
Confidence 11 122233446789999986654 32 33 5888887665 2 2333333322 667
Q ss_pred EEEecCCCcEEEEeccCC---eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEecCCCCCC
Q 021160 157 VNFFGPNDEYVMSGSDCG---HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDF 228 (316)
Q Consensus 157 ~~~~~~~~~~l~~~~~dg---~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~---~i~iwd~~~~~~ 228 (316)
..| +|++++++..+.++ .|.+||+.++.. ..+... .......|+|+++.|+..+.++ .+++.+......
T Consensus 327 ~~~-spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~ 401 (417)
T TIGR02800 327 PSW-SPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFR 401 (417)
T ss_pred eEE-CCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCcee
Confidence 788 99999999888766 799999987654 333322 2335568999999987766554 355556554433
No 250
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.23 E-value=2.3e-10 Score=89.78 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=99.1
Q ss_pred EEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE--ecCCcEE
Q 021160 39 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS--YNDELVY 116 (316)
Q Consensus 39 ~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s--~~d~~i~ 116 (316)
-++|+|+| +++|+.+.- .+.|-|..+-++.+ +.. --+.|.-+.|..+..++.+ ..++.|.
T Consensus 13 ~c~fSp~g-~yiAs~~~y-rlviRd~~tlq~~q---------------lf~-cldki~yieW~ads~~ilC~~yk~~~vq 74 (447)
T KOG4497|consen 13 FCSFSPCG-NYIASLSRY-RLVIRDSETLQLHQ---------------LFL-CLDKIVYIEWKADSCHILCVAYKDPKVQ 74 (447)
T ss_pred ceeECCCC-Ceeeeeeee-EEEEeccchhhHHH---------------HHH-HHHHhhheeeeccceeeeeeeeccceEE
Confidence 46899999 999998765 67778887765321 101 1346778899988876555 3689999
Q ss_pred EEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEE-EeccCCeEEEEeccCCeeEEEeecCcc
Q 021160 117 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKKGGKLVRLMVGDRH 195 (316)
Q Consensus 117 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~v~~wd~~~~~~~~~~~~~~~ 195 (316)
+|++... .-.-.+.....+ +.+++| +|+|+.|+ +..-+-.|.+|.+.+.+.... +-.+.
T Consensus 75 vwsl~Qp----------------ew~ckIdeg~ag--ls~~~W-SPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~ 134 (447)
T KOG4497|consen 75 VWSLVQP----------------EWYCKIDEGQAG--LSSISW-SPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKT 134 (447)
T ss_pred EEEeecc----------------eeEEEeccCCCc--ceeeeE-CCCcceEeeeecceeEEEEEEeccceeEEe-ccccc
Confidence 9999876 344455555544 899999 99996554 555688999999998775433 32334
Q ss_pred ceEEEEEcCCCCeEEEEeC
Q 021160 196 VVNQLEPHPHIPMFATCGI 214 (316)
Q Consensus 196 ~v~~~~~~p~~~~l~s~~~ 214 (316)
.+..++|+|+|++.+.++.
T Consensus 135 ~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 135 NVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred CceeEEECCCCceeeeeec
Confidence 5688999999999777663
No 251
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.22 E-value=4.1e-09 Score=86.78 Aligned_cols=191 Identities=16% Similarity=0.114 Sum_probs=132.6
Q ss_pred CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEE-ECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCc
Q 021160 1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV-IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV 79 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~-~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~ 79 (316)
+.|.|.++|..+.+.+++-............-.-.+..-+. |++....+++..+. |+..+.+...+-.
T Consensus 285 ~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~---------- 353 (668)
T COG4946 285 NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYS---------- 353 (668)
T ss_pred cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCee----------
Confidence 46889999988776554432211110000000011111222 45544478888776 8888887765531
Q ss_pred eecccccccCCCcccEEEEEEccCCCeEE-EecCC-cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160 80 DTFCPRHLIGKNNIHITGLAYSNTSELLI-SYNDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 157 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 157 (316)
+.-+|...|.-..+..+++-++ +..|| .+-++|.+++ .++.+...-.. |.++
T Consensus 354 -------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-----------------e~kr~e~~lg~--I~av 407 (668)
T COG4946 354 -------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-----------------EVKRIEKDLGN--IEAV 407 (668)
T ss_pred -------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc-----------------eEEEeeCCccc--eEEE
Confidence 1135666788777877776444 45677 8999999987 45666666544 9999
Q ss_pred EEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC----cEEEecCCCCCCC
Q 021160 158 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK----TVKLWAPMPTDFP 229 (316)
Q Consensus 158 ~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~----~i~iwd~~~~~~~ 229 (316)
.. +++|++++.+.+...+.+.|+.+|+....-+...+-|+...|||+++++|-+--+| .|+++|..++++.
T Consensus 408 ~v-s~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 408 KV-SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred EE-cCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 98 99999999999999999999999987655556678899999999999999887665 6899999988743
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=2.9e-09 Score=91.74 Aligned_cols=166 Identities=9% Similarity=0.074 Sum_probs=97.4
Q ss_pred cceEEEEECCCCCcEEEEEe-cCC----cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160 35 IRLNAIVIDPRNPNYFAVGG-SDE----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 109 (316)
Q Consensus 35 ~~v~~~~~~~~~~~~l~~g~-~dg----~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 109 (316)
+.....+|+|+| +.|+..+ .+| .+.+|++..+.. . ....+...........+|+|+|+.|+.
T Consensus 231 g~~~~p~wSPDG-~~Laf~s~~~g~~di~~~~~~~~~g~~-------g-----~~~~lt~~~~~~~~~p~wSPDG~~Laf 297 (428)
T PRK01029 231 GNQLMPTFSPRK-KLLAFISDRYGNPDLFIQSFSLETGAI-------G-----KPRRLLNEAFGTQGNPSFSPDGTRLVF 297 (428)
T ss_pred CCccceEECCCC-CEEEEEECCCCCcceeEEEeecccCCC-------C-----cceEeecCCCCCcCCeEECCCCCEEEE
Confidence 344568999999 5555443 333 344466664310 0 111111222233456799999996665
Q ss_pred -e-cCCcEEEE--EcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC---CeEEEEecc
Q 021160 110 -Y-NDELVYLF--EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKK 182 (316)
Q Consensus 110 -~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~v~~wd~~ 182 (316)
+ .++...+| ++.... .....+...... +....| +|+|+.|+..+.+ ..|++||+.
T Consensus 298 ~s~~~g~~~ly~~~~~~~g---------------~~~~~lt~~~~~--~~~p~w-SPDG~~Laf~~~~~g~~~I~v~dl~ 359 (428)
T PRK01029 298 VSNKDGRPRIYIMQIDPEG---------------QSPRLLTKKYRN--SSCPAW-SPDGKKIAFCSVIKGVRQICVYDLA 359 (428)
T ss_pred EECCCCCceEEEEECcccc---------------cceEEeccCCCC--ccceeE-CCCCCEEEEEEcCCCCcEEEEEECC
Confidence 3 35654444 443210 122333333322 667888 9999998876543 469999999
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEecCCCCCCCCCC
Q 021160 183 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDFPPLP 232 (316)
Q Consensus 183 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~---d~~i~iwd~~~~~~~~~~ 232 (316)
+++... +......+....|+|+++.|+..+. ...|.++++.+++...+.
T Consensus 360 ~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 360 TGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 887543 3333345677999999998764432 346888898877644443
No 253
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.21 E-value=1.7e-08 Score=77.32 Aligned_cols=190 Identities=10% Similarity=-0.004 Sum_probs=122.2
Q ss_pred cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC--CeEEEecCCcEEEEEcCCCCC
Q 021160 48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISYNDELVYLFEKNMGLG 125 (316)
Q Consensus 48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~d~~i~iwd~~~~~~ 125 (316)
-+||.|+..|...+|.+.+.+.. ..+...|...|+-+.=..+. .+++++.|.++++.+++.+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h--------------~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~-- 148 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGH--------------LYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGD-- 148 (344)
T ss_pred cEEEeccccceeeeecccCcccc--------------eeeecccccchhhhhhhcccccceeeccCCcceeEEEEecC--
Confidence 48999999999999999876521 11112222322222212222 3667778999999988765
Q ss_pred CCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC-CeeEEE-e-ecCccceEEEEE
Q 021160 126 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRL-M-VGDRHVVNQLEP 202 (316)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~-~-~~~~~~v~~~~~ 202 (316)
.... ..|...-.+.++++ +++++++++.++...|.+|.+.. ++.+.. . ..-+..-.+..|
T Consensus 149 --------------s~~~--~~h~~~~~~ns~~~-snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 149 --------------SNKF--AVHNQNLTQNSLHY-SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF 211 (344)
T ss_pred --------------cccc--eeeccccceeeeEE-cCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee
Confidence 1221 12222123788888 99999999999999999999864 333322 2 223345577899
Q ss_pred cCCCCeEEEEeCCCcEEEecCCCCC-----CCCCCCCcccceeeeecCCCC--ceeEEecCCCeEEEEEecccCc
Q 021160 203 HPHIPMFATCGIEKTVKLWAPMPTD-----FPPLPDNAEKIMKANKQGRED--HSRITLTPDVIMHVLRLQRRQT 270 (316)
Q Consensus 203 ~p~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~d~~~~~w~~~~~~~ 270 (316)
+.+...+|++..||++.|||++... ...-+.|....+....+++.+ .+|+-.-.-+.+++.|+++...
T Consensus 212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 212 SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 9999999999999999999998654 122223444444555566532 2344444457789999887643
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=3.4e-09 Score=92.03 Aligned_cols=181 Identities=12% Similarity=0.052 Sum_probs=105.0
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCc--EEEEeCcCCcccCCCCCCCCcee
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEY--ARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~--v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.|.+||+.+.+...+... .+.....+|+|++..++++.+.++. |.++|+.+++.
T Consensus 243 ~L~~~dl~tg~~~~lt~~------------~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~------------ 298 (448)
T PRK04792 243 EIFVQDIYTQVREKVTSF------------PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL------------ 298 (448)
T ss_pred EEEEEECCCCCeEEecCC------------CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe------------
Confidence 467777766544322211 1233478999999444455666675 77778776642
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEE-e-cCC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 157 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 157 (316)
..+ ..+.......+|+|+|+.++. + .++ .|+++|+.++ + ...+...... ....
T Consensus 299 ---~~l-t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g----------------~-~~~Lt~~g~~--~~~~ 355 (448)
T PRK04792 299 ---TRI-TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG----------------K-VSRLTFEGEQ--NLGG 355 (448)
T ss_pred ---EEC-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC----------------C-EEEEecCCCC--CcCe
Confidence 111 223334567899999986654 3 233 4777777665 2 2222212211 3456
Q ss_pred EEecCCCcEEEEecc-CC--eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC-CC--cEEEecCCCCCCCCC
Q 021160 158 NFFGPNDEYVMSGSD-CG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPL 231 (316)
Q Consensus 158 ~~~~~~~~~l~~~~~-dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~--~i~iwd~~~~~~~~~ 231 (316)
+| +|+|++|+..+. ++ .|.++|+.+++.. .+... .......|+|+++.|+..+. ++ .+.+++........+
T Consensus 356 ~~-SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 356 SI-TPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARL 432 (448)
T ss_pred eE-CCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 77 999999877655 33 4666788877643 33322 12234579999998765553 33 367778765554445
Q ss_pred CCC
Q 021160 232 PDN 234 (316)
Q Consensus 232 ~~~ 234 (316)
..+
T Consensus 433 ~~~ 435 (448)
T PRK04792 433 PAG 435 (448)
T ss_pred cCC
Confidence 433
No 255
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=1.5e-10 Score=108.57 Aligned_cols=174 Identities=14% Similarity=0.240 Sum_probs=130.7
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
+|.|++|.-...+..-+++.. .+..|+.+.|+.+| +.+.++..||.+.+|..... |+..
T Consensus 2229 dgsv~~~~w~~~~~v~~~rt~----------g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~pk----------~~~s 2287 (2439)
T KOG1064|consen 2229 DGSVRMFEWGHGQQVVCFRTA----------GNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQASPK----------PYTS 2287 (2439)
T ss_pred CceEEEEeccCCCeEEEeecc----------CcchhhhhhhcccC-CceeeeccCCceeecccCCc----------ceec
Confidence 688999988766654444432 24689999999999 89999999999999998722 2222
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEE-e---cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLIS-Y---NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 157 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 157 (316)
...|......+.|-. ..+++ + .++.+.+||..... ..-..-..|..+ ++++
T Consensus 2288 ------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~---------------~~s~v~~~H~~g--aT~l 2342 (2439)
T KOG1064|consen 2288 ------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPP---------------MNSLVHTCHDGG--ATVL 2342 (2439)
T ss_pred ------cccCCccccceeeee--hhhhccccCCCCCcccchhcccCc---------------ccceeeeecCCC--ceEE
Confidence 256777778888866 44444 2 37889999976541 111122677766 9999
Q ss_pred EEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCC
Q 021160 158 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP 232 (316)
Q Consensus 158 ~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~ 232 (316)
++ -|..++|++|+.+|.|++||++..++++.++. ++ ...+|++++..|.|+||++..-. +.+++
T Consensus 2343 ~~-~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2343 AY-APKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EE-cCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99 99999999999999999999998887776654 44 56789999999999999998765 55544
No 256
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.17 E-value=7.7e-10 Score=88.96 Aligned_cols=162 Identities=14% Similarity=0.253 Sum_probs=110.9
Q ss_pred ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE---ec
Q 021160 36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS---YN 111 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s---~~ 111 (316)
....+..++.+ .++|++..+....++++..... ....+..++. ...-+++.|..+.. .+++ +.
T Consensus 64 a~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~-----~~kl~~~~~v-------~~~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 64 APALVLTSDSG-RLVAVATSSKQRAVFDYRENPK-----GAKLLDVSCV-------PKRPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred cccccccCCCc-eEEEEEeCCCceEEEEEecCCC-----cceeeeEeec-------ccCcceeeeeeccceEEEEeecCC
Confidence 34455667777 8999998888888888775431 0011111111 11223344444333 3333 23
Q ss_pred CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe-
Q 021160 112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM- 190 (316)
Q Consensus 112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~- 190 (316)
...+.+|....+ ....+.||-.. ++++++ +||+++|+++..|..|++-.......+..+
T Consensus 131 ~~~~di~s~~~~-----------------~~~~~lGhvSm--l~dVav-S~D~~~IitaDRDEkIRvs~ypa~f~Iesfc 190 (390)
T KOG3914|consen 131 VYSFDILSADSG-----------------RCEPILGHVSM--LLDVAV-SPDDQFIITADRDEKIRVSRYPATFVIESFC 190 (390)
T ss_pred ceeeeeeccccc-----------------Ccchhhhhhhh--hheeee-cCCCCEEEEecCCceEEEEecCcccchhhhc
Confidence 455666665543 44556788866 999999 999999999999999999887766666665
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCC
Q 021160 191 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPL 231 (316)
Q Consensus 191 ~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~ 231 (316)
-||+..|..++.-++. .|+++|.|+++++||+++++ +.++
T Consensus 191 lGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 191 LGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred cccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCccccc
Confidence 4799999999998764 48899999999999999887 4433
No 257
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=1.7e-10 Score=96.59 Aligned_cols=207 Identities=10% Similarity=0.118 Sum_probs=139.9
Q ss_pred ccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeE
Q 021160 28 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 107 (316)
Q Consensus 28 ~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 107 (316)
..+.||...|.+++--.+. +-+++++.|.+|++|.++... ++--..-|..+. ..|+.+|..+.|-.+.+.+
T Consensus 729 ~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~Eg-------D~~~tsaCQfTY-~aHkk~i~~igfL~~lr~i 799 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEG-------DEIGTSACQFTY-QAHKKPIHDIGFLADLRSI 799 (1034)
T ss_pred ecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEecccc-------CccccceeeeEh-hhccCcccceeeeecccee
Confidence 3456899999988766655 789999999999999997421 011111133333 7899999999999887777
Q ss_pred EEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceee---CCcCCceeeeEEEecCCCcEEEEe-ccCCeEEEEeccC
Q 021160 108 ISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKG 183 (316)
Q Consensus 108 ~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~v~~wd~~~ 183 (316)
+++ |+-|++||.--+ .++..+. .+.....|.++. +-+...+..| +...+|+++|.+.
T Consensus 800 ~Sc-D~giHlWDPFig----------------r~Laq~~dapk~~a~~~ikcl~--nv~~~iliAgcsaeSTVKl~DaRs 860 (1034)
T KOG4190|consen 800 ASC-DGGIHLWDPFIG----------------RLLAQMEDAPKEGAGGNIKCLE--NVDRHILIAGCSAESTVKLFDARS 860 (1034)
T ss_pred eec-cCcceeeccccc----------------chhHhhhcCcccCCCceeEecc--cCcchheeeeccchhhheeeeccc
Confidence 765 788999997554 2322111 122222355553 2344444444 7789999999998
Q ss_pred CeeEEEee-----cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCC
Q 021160 184 GKLVRLMV-----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPD 257 (316)
Q Consensus 184 ~~~~~~~~-----~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d 257 (316)
++....++ +....+.+++..|.|+.++.+-..|.|.+.|.++++ +...+.-....++++ .+.+..++....|
T Consensus 861 ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla--apsdq~L~~sald 938 (1034)
T KOG4190|consen 861 CEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA--APSDQALAQSALD 938 (1034)
T ss_pred ccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc--CchhHHHHhhccc
Confidence 87766554 344678899999999999999889999999999998 555554444444443 2333455555555
Q ss_pred CeEEE-EE
Q 021160 258 VIMHV-LR 264 (316)
Q Consensus 258 ~~~~~-w~ 264 (316)
..+-+ |-
T Consensus 939 HslaVnWh 946 (1034)
T KOG4190|consen 939 HSLAVNWH 946 (1034)
T ss_pred ceeEeeeh
Confidence 55555 54
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=6.3e-09 Score=90.42 Aligned_cols=178 Identities=13% Similarity=0.062 Sum_probs=105.2
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEE-EEecCC--cEEEEeCcCCcccCCCCCCCCce
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFA-VGGSDE--YARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~-~g~~dg--~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
.|.+||+.+.+..++.. ..+.+...+|+|+| +.|+ +...+| .|.+||+.+++..
T Consensus 224 ~l~~~~l~~g~~~~l~~------------~~g~~~~~~~SpDG-~~la~~~~~~g~~~Iy~~d~~~~~~~---------- 280 (430)
T PRK00178 224 RIFVQNLDTGRREQITN------------FEGLNGAPAWSPDG-SKLAFVLSKDGNPEIYVMDLASRQLS---------- 280 (430)
T ss_pred EEEEEECCCCCEEEccC------------CCCCcCCeEECCCC-CEEEEEEccCCCceEEEEECCCCCeE----------
Confidence 46677776654433221 12334578999999 5554 555555 5778898876521
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEE-ec-C--CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-D--ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG 156 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 156 (316)
.+ ..+........|+|+|+.++. +. + ..|+++++.++ +. ..+..... ....
T Consensus 281 -----~l-t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g----------------~~-~~lt~~~~--~~~~ 335 (430)
T PRK00178 281 -----RV-TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG----------------RA-ERVTFVGN--YNAR 335 (430)
T ss_pred -----Ec-ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC----------------CE-EEeecCCC--Cccc
Confidence 11 223334556789999985554 32 3 35777787665 22 22221111 1344
Q ss_pred EEEecCCCcEEEEeccC-C--eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEecCCCCCCCC
Q 021160 157 VNFFGPNDEYVMSGSDC-G--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPP 230 (316)
Q Consensus 157 ~~~~~~~~~~l~~~~~d-g--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d---~~i~iwd~~~~~~~~ 230 (316)
..| +|++++|+..+.. + .|.++|+.+++.. .+.. ........|+|+++.++..+.+ ..+.++++.......
T Consensus 336 ~~~-Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~ 412 (430)
T PRK00178 336 PRL-SADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLP 412 (430)
T ss_pred eEE-CCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEE
Confidence 667 9999999877643 2 5888999887643 3322 2222356899999997766543 346777776554434
Q ss_pred CC
Q 021160 231 LP 232 (316)
Q Consensus 231 ~~ 232 (316)
+.
T Consensus 413 l~ 414 (430)
T PRK00178 413 LP 414 (430)
T ss_pred Cc
Confidence 43
No 259
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.13 E-value=1.3e-09 Score=86.00 Aligned_cols=183 Identities=11% Similarity=0.112 Sum_probs=116.8
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC--eEEE
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS 109 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s 109 (316)
.|..-|++++++.+. ..++++ .|-.|.+|+++-... ...+-...+... ..-+.-|++..|+|... ++.+
T Consensus 162 aHtyhiNSIS~NsD~-Et~lSA-DdLRINLWnlei~d~------sFnIVDIKP~nm-EeLteVITsaEFhp~~cn~f~YS 232 (433)
T KOG1354|consen 162 AHTYHINSISVNSDK-ETFLSA-DDLRINLWNLEIIDQ------SFNIVDIKPANM-EELTEVITSAEFHPHHCNVFVYS 232 (433)
T ss_pred cceeEeeeeeecCcc-ceEeec-cceeeeeccccccCC------ceeEEEccccCH-HHHHHHHhhhccCHhHccEEEEe
Confidence 688999999999988 666665 578899999974320 001111111111 12245688999999764 4445
Q ss_pred ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEec-cCCeeEE
Q 021160 110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK-KGGKLVR 188 (316)
Q Consensus 110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~-~~~~~~~ 188 (316)
++.|+|++.|++....-...+.-.+.........-|.+--. .|.++.| +++|+++++-.. -+|++||+ ...+++.
T Consensus 233 SSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIs--SISDvKF-s~sGryilsRDy-ltvk~wD~nme~~pv~ 308 (433)
T KOG1354|consen 233 SSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIIS--SISDVKF-SHSGRYILSRDY-LTVKLWDLNMEAKPVE 308 (433)
T ss_pred cCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhh--hhhceEE-ccCCcEEEEecc-ceeEEEeccccCCcce
Confidence 68999999999854100000000000000011111222222 3888999 999999998754 58999998 4567777
Q ss_pred EeecCcc------------c---eEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 189 LMVGDRH------------V---VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 189 ~~~~~~~------------~---v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
+++-|.. . =..++|+-++.+++||+....++++++..+.
T Consensus 309 t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 309 TYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 7766531 2 2457899999999999999999999976665
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=5.6e-08 Score=92.37 Aligned_cols=215 Identities=11% Similarity=0.139 Sum_probs=129.4
Q ss_pred ceEEEEECCCCCcEE-EEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccC-CCcccEEEEEEccC-CCeEEE-ec
Q 021160 36 RLNAIVIDPRNPNYF-AVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNIHITGLAYSNT-SELLIS-YN 111 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l-~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~-~~~l~s-~~ 111 (316)
....+++++++ +.| ++-...+.|+++|+.++..............+.-..... ..-..-..++++|+ +.++++ ..
T Consensus 625 ~P~GIavd~~g-n~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKK-NLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCC-CEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 45789999987 544 444556789999987664211100000000000000000 00112357899994 556666 47
Q ss_pred CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC---------c----CCceeeeEEEecCCCc-EEEEeccCCeEE
Q 021160 112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH---------R----NSQTVKGVNFFGPNDE-YVMSGSDCGHLF 177 (316)
Q Consensus 112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~i~~~~~~~~~~~-~l~~~~~dg~v~ 177 (316)
++.|++||..++. ...+.+. . .......+++ +|++. ++++-+.++.|+
T Consensus 704 ~~~I~v~d~~~g~-----------------v~~~~G~G~~~~~~g~~~~~~~~~~P~GIav-spdG~~LYVADs~n~~Ir 765 (1057)
T PLN02919 704 QHQIWEYNISDGV-----------------TRVFSGDGYERNLNGSSGTSTSFAQPSGISL-SPDLKELYIADSESSSIR 765 (1057)
T ss_pred CCeEEEEECCCCe-----------------EEEEecCCccccCCCCccccccccCccEEEE-eCCCCEEEEEECCCCeEE
Confidence 8999999987652 1111110 0 0012567888 88887 455666789999
Q ss_pred EEeccCCeeEEEeec-------------C--------ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCC--
Q 021160 178 IWKKKGGKLVRLMVG-------------D--------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDN-- 234 (316)
Q Consensus 178 ~wd~~~~~~~~~~~~-------------~--------~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-- 234 (316)
+||+.++.......+ + -.....++++++|..+++-..++.|++||..++.+.++.+.
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~ 845 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK 845 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCC
Confidence 999987653211100 0 11346889999999888888999999999987653322211
Q ss_pred ------------cccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160 235 ------------AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 270 (316)
Q Consensus 235 ------------~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~ 270 (316)
......++ ..++++++++-+.++.|++|++.++..
T Consensus 846 ~G~~dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 846 AGFKDGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCCCCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 11222333 566788999999999999999987654
No 261
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.1e-08 Score=85.89 Aligned_cols=166 Identities=9% Similarity=0.123 Sum_probs=112.6
Q ss_pred EEEEECCCCCcEEEEEec-----------CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCe
Q 021160 38 NAIVIDPRNPNYFAVGGS-----------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL 106 (316)
Q Consensus 38 ~~~~~~~~~~~~l~~g~~-----------dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 106 (316)
-.+.|++.+..+|+.++. ..+++++++...+ +... ..-.++|.++.|+|+++-
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s--------------~~V~--L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES--------------VSVP--LLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce--------------EEEe--cCCCCCceEEEECCCCCE
Confidence 468899887656555543 2357777776333 1111 223689999999999974
Q ss_pred E-EE-e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc---CCeEEEEe
Q 021160 107 L-IS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIWK 180 (316)
Q Consensus 107 l-~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~v~~wd 180 (316)
+ +. | .--++.|||++.. ++..+. ..+ -+++-| +|.|++|+.++- -|.|-+||
T Consensus 285 F~VvyGfMPAkvtifnlr~~-----------------~v~df~--egp--RN~~~f-np~g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRGK-----------------PVFDFP--EGP--RNTAFF-NPHGNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred EEEEEecccceEEEEcCCCC-----------------EeEeCC--CCC--ccceEE-CCCCCEEEEeecCCCCCceEEEe
Confidence 4 43 4 5888999999764 444443 222 455666 999999987764 67899999
Q ss_pred ccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC------CCcEEEecCCCCCCCCCCCCcccceeeeec
Q 021160 181 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDFPPLPDNAEKIMKANKQ 244 (316)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 244 (316)
+.+.+++..+..-.. +-..|+|+|.+|+|+.. |+.++||+..+..+..-. ...++++..|.
T Consensus 343 v~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~-f~sEL~qv~W~ 409 (566)
T KOG2315|consen 343 VPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKM-FKSELLQVEWR 409 (566)
T ss_pred ccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhh-hhHhHhheeee
Confidence 999888888775433 45789999999988864 688999998876532211 11145555544
No 262
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.08 E-value=3.6e-08 Score=83.04 Aligned_cols=190 Identities=13% Similarity=0.123 Sum_probs=118.1
Q ss_pred cEE-EEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCC
Q 021160 48 NYF-AVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLG 125 (316)
Q Consensus 48 ~~l-~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~ 125 (316)
+++ ++-..++.|.+.|..+.+. ...+..+ ...-..+.++|||+++.. +.|+.|.++|+.+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~--------------~~~i~~~-~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~-- 68 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKV--------------VARIPTG-GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG-- 68 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SE--------------EEEEE-S-TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS--
T ss_pred cEEEEEecCCCEEEEEECCCCeE--------------EEEEcCC-CCceeEEEecCCCCEEEEEcCCCeEEEEECCcc--
Confidence 344 4556789999999998873 2223122 222345779999995555 57999999999988
Q ss_pred CCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec-cCCeEEEEeccCCeeEEEeecC-------ccce
Q 021160 126 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVRLMVGD-------RHVV 197 (316)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~-------~~~v 197 (316)
+.+..+..... ..++++ +++|+++++++ ..+.+.++|.++.+++..++.. ..++
T Consensus 69 --------------~~v~~i~~G~~---~~~i~~-s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv 130 (369)
T PF02239_consen 69 --------------KVVATIKVGGN---PRGIAV-SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRV 130 (369)
T ss_dssp --------------SEEEEEE-SSE---EEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---E
T ss_pred --------------cEEEEEecCCC---cceEEE-cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCc
Confidence 67777665432 688998 99999998776 5899999999999999887643 3467
Q ss_pred EEEEEcCCCCeEEEEeCC-CcEEEecCCCCCCCCC-CCCcccceeeeecCCCCceeEE-ecCCCeEEEEEecccCcce
Q 021160 198 NQLEPHPHIPMFATCGIE-KTVKLWAPMPTDFPPL-PDNAEKIMKANKQGREDHSRIT-LTPDVIMHVLRLQRRQTLA 272 (316)
Q Consensus 198 ~~~~~~p~~~~l~s~~~d-~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s-~~~d~~~~~w~~~~~~~~~ 272 (316)
..+..+|..+.++.+-.| +.|.+-|....+.... .-..........+.+++++++. ...+..+-++|.++++...
T Consensus 131 ~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 131 AAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp EEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred eeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEE
Confidence 788888888866655544 7777777665431110 0011122233447777777654 5567788899988764443
No 263
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=2.6e-07 Score=77.84 Aligned_cols=214 Identities=16% Similarity=0.194 Sum_probs=137.7
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC-CCcEEEE-----EecCCcEEEEeCcCCcccCCCCCC
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR-NPNYFAV-----GGSDEYARVYDIRKCHWYSPISSD 76 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~-~~~~l~~-----g~~dg~v~~wd~~~~~~~~~~~~~ 76 (316)
+.|++|++...+.. .-.+ |...|+.+.++|. .+..+|+ ++.-+.|+||.+......
T Consensus 146 nev~f~~~~~f~~~-~~kl-----------~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~------ 207 (566)
T KOG2315|consen 146 NEVQFYDLGSFKTI-QHKL-----------SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH------ 207 (566)
T ss_pred ceEEEEecCCccce-eeee-----------eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc------
Confidence 56788888764321 1111 4668999999997 3345554 355678999988733211
Q ss_pred CCceecccccccCCCcccEEEEEEccCCC-eE--EEec-CC---------cEEEEEcCCCCCCCCccCCccccccCCCcc
Q 021160 77 TPVDTFCPRHLIGKNNIHITGLAYSNTSE-LL--ISYN-DE---------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQ 143 (316)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l--~s~~-d~---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 143 (316)
.++ ..+.+. ...=..+.|++-|. +| +++. |. ++++++++.. ..
T Consensus 208 ~~~---a~ksFF---kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~----------------s~-- 263 (566)
T KOG2315|consen 208 QPV---ANKSFF---KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE----------------SV-- 263 (566)
T ss_pred chh---hhcccc---ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc----------------eE--
Confidence 011 111111 12234678998886 22 2332 44 4888887732 12
Q ss_pred eeeCC-cCCceeeeEEEecCCCcEEEE--eccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC---Cc
Q 021160 144 VYSGH-RNSQTVKGVNFFGPNDEYVMS--GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KT 217 (316)
Q Consensus 144 ~~~~~-~~~~~i~~~~~~~~~~~~l~~--~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d---~~ 217 (316)
.+... . .+|.++.| ++++.-+++ |-.-..+.|||++ ++++..+. .++-+++-|+|.|++++.+|.+ |.
T Consensus 264 ~V~L~k~--GPVhdv~W-~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 264 SVPLLKE--GPVHDVTW-SPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD 337 (566)
T ss_pred EEecCCC--CCceEEEE-CCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc
Confidence 22222 3 34999999 888865544 4557789999997 77777664 4566889999999998887754 78
Q ss_pred EEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecC------CCeEEEEEecc
Q 021160 218 VKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTP------DVIMHVLRLQR 267 (316)
Q Consensus 218 i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------d~~~~~w~~~~ 267 (316)
|-|||+...+ +..+. . .-.....|+++++++++++. |+.+++|+...
T Consensus 338 mEvwDv~n~K~i~~~~-a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 338 MEVWDVPNRKLIAKFK-A--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred eEEEeccchhhccccc-c--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 9999999866 43333 2 22345559999999988665 58889998653
No 264
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.03 E-value=5.5e-09 Score=79.55 Aligned_cols=147 Identities=15% Similarity=0.206 Sum_probs=94.6
Q ss_pred cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec------CCcEEEEEcC
Q 021160 48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN------DELVYLFEKN 121 (316)
Q Consensus 48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~------d~~i~iwd~~ 121 (316)
+-++++..||.+.+++.+.-.. ....+...|.+ -.+.++...++++.++. -+..+.|+++
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~-------------~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~ 167 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLA-------------LMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLD 167 (319)
T ss_pred CceEecCCCceEEEEechHHHh-------------hhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccc
Confidence 5799999999999999875210 00111011111 11223334455555532 3456677765
Q ss_pred CCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee-EEEeecCccceEEE
Q 021160 122 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VRLMVGDRHVVNQL 200 (316)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~-~~~~~~~~~~v~~~ 200 (316)
.. +.. ...+.....+.+++-++.....+++|++||.+-+||.+.... ...+..|+.+++.+
T Consensus 168 p~----------------~t~--~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV 229 (319)
T KOG4714|consen 168 PI----------------KTL--IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEV 229 (319)
T ss_pred cc----------------ccc--cccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhhe
Confidence 43 111 111222223788887444566778899999999999987643 34457899999999
Q ss_pred EEcCCCC-eEEEEeCCCcEEEecCCCC
Q 021160 201 EPHPHIP-MFATCGIEKTVKLWAPMPT 226 (316)
Q Consensus 201 ~~~p~~~-~l~s~~~d~~i~iwd~~~~ 226 (316)
-|||..+ .|+++++||.+..||..+.
T Consensus 230 ~FHpk~p~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 230 HFHPKNPEHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred eccCCCchheeEecCCCcEEEEcCCCc
Confidence 9999765 4999999999999998763
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.01 E-value=3.4e-07 Score=75.70 Aligned_cols=245 Identities=9% Similarity=0.015 Sum_probs=140.2
Q ss_pred CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe---------cCCcEEEEeCcCCcccC
Q 021160 1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG---------SDEYARVYDIRKCHWYS 71 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~---------~dg~v~~wd~~~~~~~~ 71 (316)
|.|.|.|.|..+.+....+...... ..+ ++|++..++++.+ .+..|.+||..+.+...
T Consensus 25 ~~~~v~ViD~~~~~v~g~i~~G~~P------------~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~ 91 (352)
T TIGR02658 25 ATTQVYTIDGEAGRVLGMTDGGFLP------------NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA 91 (352)
T ss_pred cCceEEEEECCCCEEEEEEEccCCC------------cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe
Confidence 4588999999887776666654222 124 9999955555556 68999999999998554
Q ss_pred CCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe--c-CCcEEEEEcCCCCCCC----CccCCccc---------
Q 021160 72 PISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--N-DELVYLFEKNMGLGPS----PLSLSPED--------- 135 (316)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~-d~~i~iwd~~~~~~~~----~~~~~~~~--------- 135 (316)
++..+...+.. ....-..++++|+|++|... . +..|.+.|+.++.-.. +.....+.
T Consensus 92 ~i~~p~~p~~~--------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~ 163 (352)
T TIGR02658 92 DIELPEGPRFL--------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMH 163 (352)
T ss_pred EEccCCCchhh--------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEE
Confidence 33222110000 01223477899999966653 3 8899999998875100 00000000
Q ss_pred cccCCCcc---------------eeeCCcCCceeee-EEEecCCCcEEEEeccCCeEEEEeccC-----CeeEEEeec--
Q 021160 136 LQKREEPQ---------------VYSGHRNSQTVKG-VNFFGPNDEYVMSGSDCGHLFIWKKKG-----GKLVRLMVG-- 192 (316)
Q Consensus 136 ~~~~~~~~---------------~~~~~~~~~~i~~-~~~~~~~~~~l~~~~~dg~v~~wd~~~-----~~~~~~~~~-- 192 (316)
........ .+.+.... +.. -.|...++.++....+ |.|.+.|+.. .+....+..
T Consensus 164 ~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~--v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR02658 164 CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEY--LINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAE 240 (352)
T ss_pred eecCceEEEEecCCCceEEeeeeeecCCccc--cccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccc
Confidence 00000000 00000000 000 0221237777777666 9999999543 333333221
Q ss_pred -----CccceEEEEEcCCCCeEEEEe----------CCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCc-eeEEec
Q 021160 193 -----DRHVVNQLEPHPHIPMFATCG----------IEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDH-SRITLT 255 (316)
Q Consensus 193 -----~~~~v~~~~~~p~~~~l~s~~----------~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~s~~ 255 (316)
..+.+.-++++|+++.+.... ..+.|.++|..+.+ +..+. -...+..+. +++++. ++....
T Consensus 241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~ia-vS~Dgkp~lyvtn 318 (352)
T TIGR02658 241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSIN-VSQDAKPLLYALS 318 (352)
T ss_pred cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEE-ECCCCCeEEEEeC
Confidence 234455699999998866532 12479999998887 44433 223444455 777777 666554
Q ss_pred -CCCeEEEEEecccCcc
Q 021160 256 -PDVIMHVLRLQRRQTL 271 (316)
Q Consensus 256 -~d~~~~~w~~~~~~~~ 271 (316)
.++.+.+.|..+++..
T Consensus 319 ~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 319 TGDKTLYIFDAETGKEL 335 (352)
T ss_pred CCCCcEEEEECcCCeEE
Confidence 6788999998887554
No 266
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=4.3e-07 Score=78.02 Aligned_cols=179 Identities=12% Similarity=0.074 Sum_probs=108.4
Q ss_pred ceEEEEECCCCCcEEEEEec---CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e-
Q 021160 36 RLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y- 110 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g~~---dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~- 110 (316)
......|+|++...++..+. +..|.++|+.+++. ..+ ....+......|+|||+.++. .
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~---------------~~l-t~~~g~~~~~~~SPDG~~la~~~~ 252 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK---------------EKI-ASSQGMLVVSDVSKDGSKLLLTMA 252 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---------------EEE-ecCCCcEEeeEECCCCCEEEEEEc
Confidence 56789999999433554333 35688899987752 111 112344556789999984443 2
Q ss_pred c--CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC-C--eEEEEeccCCe
Q 021160 111 N--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-G--HLFIWKKKGGK 185 (316)
Q Consensus 111 ~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g--~v~~wd~~~~~ 185 (316)
. +..|+++|+.++ . .+.+..+... .....| +|||+.|+..++. + .|++.|+.+++
T Consensus 253 ~~g~~~Iy~~dl~~g----------------~-~~~LT~~~~~--d~~p~~-SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 253 PKGQPDIYLYDTNTK----------------T-LTQITNYPGI--DVNGNF-VEDDKRIVFVSDRLGYPNIFMKKLNSGS 312 (419)
T ss_pred cCCCcEEEEEECCCC----------------c-EEEcccCCCc--cCccEE-CCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 2 456888888766 2 2333333221 234467 9999988776642 2 68888888777
Q ss_pred eEEEeecCccceEEEEEcCCCCeEEEEeCC---------CcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEec
Q 021160 186 LVRLMVGDRHVVNQLEPHPHIPMFATCGIE---------KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT 255 (316)
Q Consensus 186 ~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 255 (316)
..+.... +. ....|+|+|+.|+..+.. ..|.+.|+.++....+.... ......|+++++.++-.+
T Consensus 313 ~~rlt~~--g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~--~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 313 VEQVVFH--GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG--VNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred eEeCccC--CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC--CcCCeEECCCCCEEEEEE
Confidence 5443321 11 124899999997766543 26788888887755554321 112233677776554433
No 267
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.01 E-value=1.4e-09 Score=59.86 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=36.9
Q ss_pred CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEec
Q 021160 184 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 222 (316)
Q Consensus 184 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd 222 (316)
++++..+.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 268
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.00 E-value=1.3e-08 Score=82.01 Aligned_cols=162 Identities=9% Similarity=0.052 Sum_probs=103.5
Q ss_pred cEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc
Q 021160 94 HITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD 172 (316)
Q Consensus 94 ~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 172 (316)
....+..++.+++++.+ +++...++++..... ..+....+.....+..+..+.. +......-..++
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~------------~~kl~~~~~v~~~~~ai~~~~~-~~sv~v~dkagD 130 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPK------------GAKLLDVSCVPKRPTAISFIRE-DTSVLVADKAGD 130 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCC------------cceeeeEeecccCcceeeeeec-cceEEEEeecCC
Confidence 34456677888888886 677777887766510 1123333333333222333333 222222222344
Q ss_pred CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCC-CCCcccceeeeecCCCCce
Q 021160 173 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPL-PDNAEKIMKANKQGREDHS 250 (316)
Q Consensus 173 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 250 (316)
...+.+|....+. ...+.+|-+.++.++|+||+++|+++..|..|||-...... +..+ .+|..-|-.+. -.++..
T Consensus 131 ~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is--l~~~~~ 207 (390)
T KOG3914|consen 131 VYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS--LTDNYL 207 (390)
T ss_pred ceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee--eccCce
Confidence 4455555555444 34455899999999999999999999999999997766554 4444 35777664444 224556
Q ss_pred eEEecCCCeEEEEEecccCcc
Q 021160 251 RITLTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 251 ~~s~~~d~~~~~w~~~~~~~~ 271 (316)
+++++.|+++++||+.++..+
T Consensus 208 LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 208 LLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eeecCCCCcEEEEecccCCcc
Confidence 899999999999999988665
No 269
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.00 E-value=4.6e-08 Score=75.91 Aligned_cols=195 Identities=12% Similarity=0.033 Sum_probs=123.8
Q ss_pred eEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEEe-cCCc
Q 021160 37 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDEL 114 (316)
Q Consensus 37 v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~ 114 (316)
..++.|++.+ ..++++..+|.+.+-+.....+ ...+..+.|.-.++..+|+.... ++.+| .|+.
T Consensus 124 ~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~l-------------e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~ 189 (339)
T KOG0280|consen 124 ALSLDISTSG-TKIFVSDSRGSISGVYETEMVL-------------EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS 189 (339)
T ss_pred eeEEEeeccC-ceEEEEcCCCcEEEEecceeee-------------eecccccccceeeeeeecccCCCceEEecCCCce
Confidence 3467788888 7788888999998555544331 11112367888899999987664 66664 7999
Q ss_pred EEEEEcCCCCCCCCccCCccccccCCC-cceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc-CCeeEEEeec
Q 021160 115 VYLFEKNMGLGPSPLSLSPEDLQKREE-PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVRLMVG 192 (316)
Q Consensus 115 i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~-~~~~~~~~~~ 192 (316)
+.-||++.+. +. .+.-+.|..+ |.++.-.+|.+.+|++|+.|-.|++||.+ -++++..-.
T Consensus 190 l~~~D~R~p~---------------~~i~~n~kvH~~G--V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~- 251 (339)
T KOG0280|consen 190 LSCWDIRIPK---------------TFIWHNSKVHTSG--VVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK- 251 (339)
T ss_pred EEEEEecCCc---------------ceeeecceeeecc--eEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-
Confidence 9999998441 11 1223456655 88888767789999999999999999998 466665443
Q ss_pred CccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCC------CCCCCCCcccceeeeecCCCCceeEEec-CCCeEE-EE
Q 021160 193 DRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD------FPPLPDNAEKIMKANKQGREDHSRITLT-PDVIMH-VL 263 (316)
Q Consensus 193 ~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~d~~~~-~w 263 (316)
-.+.|+.+.++|.-.. ++.++.-.-.+|-+...+. ......|..-.+...|... ...+++++ .|..++ +|
T Consensus 252 v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~-~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 252 VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK-DSFLATCSFYDKKIRQLW 330 (339)
T ss_pred cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccc-cceeeeeeccccceeeee
Confidence 2378999999996542 2233333345666555433 1222344444555554222 34556544 344433 55
Q ss_pred E
Q 021160 264 R 264 (316)
Q Consensus 264 ~ 264 (316)
-
T Consensus 331 l 331 (339)
T KOG0280|consen 331 L 331 (339)
T ss_pred e
Confidence 3
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.98 E-value=4.5e-06 Score=67.02 Aligned_cols=229 Identities=14% Similarity=0.158 Sum_probs=133.7
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEec---CCcEEEEeCcC--CcccCCCCCCC
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRK--CHWYSPISSDT 77 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~---dg~v~~wd~~~--~~~~~~~~~~~ 77 (316)
.-|++|++.+.+........ . .+.+..+-|+|+|++ +.|.++.. +|.|..|.++. +++.
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~-v-------~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt------- 79 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQL-V-------AELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLT------- 79 (346)
T ss_pred CceEEEEEeCcccccchhhh-c-------cccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEE-------
Confidence 45789999854432111111 0 135678899999998 67777643 58888888764 4421
Q ss_pred CceecccccccCCCcccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcC-----
Q 021160 78 PVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN----- 150 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 150 (316)
+.-.....+ .+-.-++++++|++++++ ..+.|.++-++....... ..+.+. |..
T Consensus 80 ----~ln~~~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~------------~v~~~~-h~g~~p~~ 140 (346)
T COG2706 80 ----FLNRQTLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQP------------VVQVVK-HTGSGPHE 140 (346)
T ss_pred ----EeeccccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccc------------ceeeee-cCCCCCCc
Confidence 011111122 233778999999987775 489999999865311100 111111 111
Q ss_pred ---CceeeeEEEecCCCcEEEEecc-CCeEEEEeccCCeeEEEee---cCccceEEEEEcCCCCeEE-EEeCCCcEEEec
Q 021160 151 ---SQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWA 222 (316)
Q Consensus 151 ---~~~i~~~~~~~~~~~~l~~~~~-dg~v~~wd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~-s~~~d~~i~iwd 222 (316)
...+....+ .|+++++++... --.|.+|++..|++...-. ........|+|||++++.. ..--+++|.+|.
T Consensus 141 rQ~~~h~H~a~~-tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~ 219 (346)
T COG2706 141 RQESPHVHSANF-TPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLE 219 (346)
T ss_pred cccCCccceeee-CCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEE
Confidence 011455666 999999988754 3468999999877543221 2235678899999999854 444789999998
Q ss_pred CCC--CCCC------CCCCC-ccc-ceeeeecCCCCceeEEecC-CCeEEEEEecc
Q 021160 223 PMP--TDFP------PLPDN-AEK-IMKANKQGREDHSRITLTP-DVIMHVLRLQR 267 (316)
Q Consensus 223 ~~~--~~~~------~~~~~-~~~-~~~~~~~~~~~~~~~s~~~-d~~~~~w~~~~ 267 (316)
... +++. +++.. ... -......++++++|.+... ...|-++.+..
T Consensus 220 y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 220 YNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred EcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 776 3322 22211 111 1122235567777655443 34555665544
No 271
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.95 E-value=3.4e-09 Score=91.71 Aligned_cols=204 Identities=11% Similarity=0.146 Sum_probs=143.4
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC---eEEEe
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE---LLISY 110 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~s~ 110 (316)
.+++.++.++|.| +-++.++.-| +.+.|+...-. .+..+.....-.+-.+.|+|... .+++.
T Consensus 24 ~~~~~a~si~p~g-rdi~lAsr~g-l~i~dld~p~~-------------ppr~l~h~tpw~vad~qws~h~a~~~wiVst 88 (1081)
T KOG0309|consen 24 DGGFNAVSINPSG-RDIVLASRQG-LYIIDLDDPFT-------------PPRWLHHITPWQVADVQWSPHPAKPYWIVST 88 (1081)
T ss_pred cCcccceeecccc-chhhhhhhcC-eEEEeccCCCC-------------CceeeeccCcchhcceecccCCCCceeEEec
Confidence 4578899999999 7888887766 45667764320 12222122233466788888653 66666
Q ss_pred cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCe-eEEE
Q 021160 111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRL 189 (316)
Q Consensus 111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~-~~~~ 189 (316)
+...-.+|++.... ....-..+-+|... ++.+.|+......+++++-|..+..||+++.. ++..
T Consensus 89 s~qkaiiwnlA~ss-------------~~aIef~lhghsra--itd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys 153 (1081)
T KOG0309|consen 89 SNQKAIIWNLAKSS-------------SNAIEFVLHGHSRA--ITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS 153 (1081)
T ss_pred CcchhhhhhhhcCC-------------ccceEEEEecCccc--eeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence 77778899986542 11223344566644 99999966667789999999999999998754 4555
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160 190 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 190 ~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~ 267 (316)
...-......++|+-..+.+...+..+.|++||.+.+. +..+.+|...+..+.....--..+++.+.|++++.|+-.+
T Consensus 154 ~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 154 TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred eecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 54444566789998877666666777899999999876 7777777777765554444456788999999999999654
No 272
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.92 E-value=3.1e-06 Score=71.26 Aligned_cols=204 Identities=13% Similarity=0.118 Sum_probs=119.7
Q ss_pred ceEEEEECCCCCcEEEEEec----CCcEEEEeCcCC--cccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160 36 RLNAIVIDPRNPNYFAVGGS----DEYARVYDIRKC--HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 109 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g~~----dg~v~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 109 (316)
....++++|++ ++|.+... ++.|..|.+... ++. ..... .........++++|++++|+.
T Consensus 38 ~Ps~l~~~~~~-~~LY~~~e~~~~~g~v~~~~i~~~~g~L~------------~~~~~-~~~g~~p~~i~~~~~g~~l~v 103 (345)
T PF10282_consen 38 NPSWLAVSPDG-RRLYVVNEGSGDSGGVSSYRIDPDTGTLT------------LLNSV-PSGGSSPCHIAVDPDGRFLYV 103 (345)
T ss_dssp SECCEEE-TTS-SEEEEEETTSSTTTEEEEEEEETTTTEEE------------EEEEE-EESSSCEEEEEECTTSSEEEE
T ss_pred CCceEEEEeCC-CEEEEEEccccCCCCEEEEEECCCcceeE------------Eeeee-ccCCCCcEEEEEecCCCEEEE
Confidence 45678999998 67766654 678999998753 321 11111 112234457889999997766
Q ss_pred e--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceee--C------CcCCceeeeEEEecCCCcEEEEec-cCCeEEE
Q 021160 110 Y--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--G------HRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFI 178 (316)
Q Consensus 110 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~~ 178 (316)
+ .++.|.++++..... +. .....+. + ........++.+ +|+++++++.. ....|++
T Consensus 104 any~~g~v~v~~l~~~g~----------l~--~~~~~~~~~g~g~~~~rq~~~h~H~v~~-~pdg~~v~v~dlG~D~v~~ 170 (345)
T PF10282_consen 104 ANYGGGSVSVFPLDDDGS----------LG--EVVQTVRHEGSGPNPDRQEGPHPHQVVF-SPDGRFVYVPDLGADRVYV 170 (345)
T ss_dssp EETTTTEEEEEEECTTSE----------EE--EEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEETTTTEEEE
T ss_pred EEccCCeEEEEEccCCcc----------cc--eeeeecccCCCCCcccccccccceeEEE-CCCCCEEEEEecCCCEEEE
Confidence 4 599999999976310 00 0111111 0 011123678888 99999887754 3557999
Q ss_pred EeccCCe--eE--EEee-cCccceEEEEEcCCCCeEE-EEeCCCcEEEecCC--CCC------CCCCCC-Cc-ccceeee
Q 021160 179 WKKKGGK--LV--RLMV-GDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPM--PTD------FPPLPD-NA-EKIMKAN 242 (316)
Q Consensus 179 wd~~~~~--~~--~~~~-~~~~~v~~~~~~p~~~~l~-s~~~d~~i~iwd~~--~~~------~~~~~~-~~-~~~~~~~ 242 (316)
|++.... +. ..+. ........++|+|+++++. ..-.++.|.++++. .+. +..++. .. .......
T Consensus 171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence 9987654 32 2222 2335678999999999854 44567889999887 322 112211 11 1012233
Q ss_pred ecCCCCcee-EEecCCCeEEEEEec
Q 021160 243 KQGREDHSR-ITLTPDVIMHVLRLQ 266 (316)
Q Consensus 243 ~~~~~~~~~-~s~~~d~~~~~w~~~ 266 (316)
..+++++++ ++......|.++++.
T Consensus 251 ~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 251 AISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEecCCCEEEEEeccCCEEEEEEEe
Confidence 367777765 455567889999983
No 273
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=1.9e-07 Score=80.14 Aligned_cols=176 Identities=7% Similarity=-0.007 Sum_probs=102.9
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecC--CcEEEEeCcCCcccCCCCCCCCcee
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~d--g~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.|.++|+.+.+..++... .+......|+|+|..++++.+.+ ..|.++|+.+++..
T Consensus 214 ~Iyv~dl~tg~~~~lt~~------------~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~----------- 270 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASS------------QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT----------- 270 (419)
T ss_pred EEEEEECCCCcEEEEecC------------CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-----------
Confidence 466777766655444321 33456788999995455555444 45777787766421
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEec--CC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISYN--DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 157 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 157 (316)
.+ ..+........|+|||+.|+..+ .+ .|++.|+.++ ...+ +..... ...
T Consensus 271 ----~L-T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g----------------~~~r-lt~~g~----~~~ 324 (419)
T PRK04043 271 ----QI-TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG----------------SVEQ-VVFHGK----NNS 324 (419)
T ss_pred ----Ec-ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC----------------CeEe-CccCCC----cCc
Confidence 11 11122233457999998555432 22 6888888776 2212 221111 123
Q ss_pred EEecCCCcEEEEeccC---------CeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEecCCC
Q 021160 158 NFFGPNDEYVMSGSDC---------GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMP 225 (316)
Q Consensus 158 ~~~~~~~~~l~~~~~d---------g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~---~i~iwd~~~ 225 (316)
.| +|+|++|+..+.. ..|.+.|+.+++. ..+... .......|+|+|+.++....++ .+.+.++..
T Consensus 325 ~~-SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 325 SV-STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred eE-CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 67 9999988776643 3688889887764 344332 2333588999999876554332 366667766
Q ss_pred CCCCCC
Q 021160 226 TDFPPL 231 (316)
Q Consensus 226 ~~~~~~ 231 (316)
.....+
T Consensus 402 ~~~~~l 407 (419)
T PRK04043 402 NKSFLF 407 (419)
T ss_pred CeeEEe
Confidence 544334
No 274
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.90 E-value=3.9e-08 Score=77.00 Aligned_cols=219 Identities=14% Similarity=0.149 Sum_probs=134.2
Q ss_pred cceEEEEECC-CCCcEEEEEecCCcEEEEeCcCCcccCCC--C--------CCCCc-----------------eecccc-
Q 021160 35 IRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPI--S--------SDTPV-----------------DTFCPR- 85 (316)
Q Consensus 35 ~~v~~~~~~~-~~~~~l~~g~~dg~v~~wd~~~~~~~~~~--~--------~~~~~-----------------~~~~~~- 85 (316)
..|+.+.|.. .+...++..+.|.+|++|.+....+.... + ...|+ -...+.
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 4588888864 44457788889999999998765321100 0 01111 111111
Q ss_pred cccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCc
Q 021160 86 HLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 165 (316)
Q Consensus 86 ~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 165 (316)
.....|...|.++.|+.+.+.++++.|-.|.+|+++... .++.+-+++.. .+..-. ..|++..|++....
T Consensus 166 vyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D----~sFnIVDiKP~----nmeeLt--eVItSaeFhp~~cn 235 (460)
T COG5170 166 VYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIID----GSFNIVDIKPH----NMEELT--EVITSAEFHPEMCN 235 (460)
T ss_pred eccccceeEeeeeeecCchheeeeccceeeeeccccccC----CceEEEeccCc----cHHHHH--HHHhhcccCHhHcc
Confidence 122678889999999999999999999999999987541 22222221111 011111 12778888444566
Q ss_pred EEEEeccCCeEEEEeccCCeeE------E----------EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--
Q 021160 166 YVMSGSDCGHLFIWKKKGGKLV------R----------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-- 227 (316)
Q Consensus 166 ~l~~~~~dg~v~~wd~~~~~~~------~----------~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-- 227 (316)
.+.-.+..|.|++-|++...+. . .+.+-...|..+.|+|+|+++++-.. -+|+|||++..+
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p 314 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP 314 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence 7777788999999999843321 1 11112346888999999999988753 589999998655
Q ss_pred CCCCCCCc------------ccceee--eecCCCCceeEEecCCCeEEEEE
Q 021160 228 FPPLPDNA------------EKIMKA--NKQGREDHSRITLTPDVIMHVLR 264 (316)
Q Consensus 228 ~~~~~~~~------------~~~~~~--~~~~~~~~~~~s~~~d~~~~~w~ 264 (316)
+.+++-|. +.++.. ..++.+...+++|+......++-
T Consensus 315 ikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 315 IKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred ceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 55554332 222211 11344556666777666655554
No 275
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.89 E-value=5.9e-06 Score=69.58 Aligned_cols=235 Identities=11% Similarity=0.138 Sum_probs=133.7
Q ss_pred ceeeEEEEeeCC--CcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe-cCCcEEEEeCcC-CcccCCCCCCC
Q 021160 2 VLFNMLFDLRSD--SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-SDEYARVYDIRK-CHWYSPISSDT 77 (316)
Q Consensus 2 ~g~v~vwd~~~~--~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~-~dg~v~~wd~~~-~~~~~~~~~~~ 77 (316)
.|.|..|++... +...+-.... .......++++|++ ++++++. .+|.|.++++.. +.+...
T Consensus 61 ~g~v~~~~i~~~~g~L~~~~~~~~---------~g~~p~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~l~~~----- 125 (345)
T PF10282_consen 61 SGGVSSYRIDPDTGTLTLLNSVPS---------GGSSPCHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGSLGEV----- 125 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEEE---------SSSCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSEEEEE-----
T ss_pred CCCEEEEEECCCcceeEEeeeecc---------CCCCcEEEEEecCC-CEEEEEEccCCeEEEEEccCCccccee-----
Confidence 357777877764 2222211110 12345679999999 6776665 589999999986 332110
Q ss_pred Cceecccc--cc--cCCCcccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCC
Q 021160 78 PVDTFCPR--HL--IGKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS 151 (316)
Q Consensus 78 ~~~~~~~~--~~--~~~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (316)
...+... .. .........++.++|++++++.. ....|.+|++...... + .....+.....
T Consensus 126 -~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~---------l---~~~~~~~~~~G- 191 (345)
T PF10282_consen 126 -VQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK---------L---TPVDSIKVPPG- 191 (345)
T ss_dssp -EEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T---------E---EEEEEEECSTT-
T ss_pred -eeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce---------E---EEeeccccccC-
Confidence 0000000 00 01123457889999999966653 4668999999765100 0 01122222221
Q ss_pred ceeeeEEEecCCCcEEEEec-cCCeEEEEecc--CCee--EEEeec----C--ccceEEEEEcCCCCeEEEEe-CCCcEE
Q 021160 152 QTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKK--GGKL--VRLMVG----D--RHVVNQLEPHPHIPMFATCG-IEKTVK 219 (316)
Q Consensus 152 ~~i~~~~~~~~~~~~l~~~~-~dg~v~~wd~~--~~~~--~~~~~~----~--~~~v~~~~~~p~~~~l~s~~-~d~~i~ 219 (316)
.....+.| +|+++++++.. .++.|.++++. .++. +..+.. . ......++++|++++|..+. .+..|.
T Consensus 192 ~GPRh~~f-~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 192 SGPRHLAF-SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS 270 (345)
T ss_dssp SSEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred CCCcEEEE-cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence 23789999 89999886655 48889999988 4432 223321 1 12577899999999965544 667899
Q ss_pred EecCCC--CCCCCC---CCCcccceeeeecCCCCceeEEe-cCCCeEEEEEecc
Q 021160 220 LWAPMP--TDFPPL---PDNAEKIMKANKQGREDHSRITL-TPDVIMHVLRLQR 267 (316)
Q Consensus 220 iwd~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~-~~d~~~~~w~~~~ 267 (316)
+|++.. +.+..+ .........++ .++++++++.+ -.++.|.++++..
T Consensus 271 vf~~d~~~g~l~~~~~~~~~G~~Pr~~~-~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVPTGGKFPRHFA-FSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEECTTTTTEEEEEEEEESSSSEEEEE-E-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEecCCCceEEEEEEeCCCCCccEEE-EeCCCCEEEEEecCCCeEEEEEEeC
Confidence 999843 332221 11112123333 56777776654 4678999998753
No 276
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=9.1e-09 Score=81.46 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=98.9
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc-CCCe-EEEec
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSEL-LISYN 111 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~-l~s~~ 111 (316)
++.|.++.|...+ +++..|..+|.|..+|++.+.-- .. .+... --|...|+++..-. ++.+ ++++.
T Consensus 252 ksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG-------~~--~~a~r--lyh~Ssvtslq~Lq~s~q~LmaS~M 319 (425)
T KOG2695|consen 252 KSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG-------NG--WCAQR--LYHDSSVTSLQILQFSQQKLMASDM 319 (425)
T ss_pred chhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC-------CC--cceEE--EEcCcchhhhhhhccccceEeeccC
Confidence 5678999999888 89999999999999999866210 00 01111 24778899988776 5554 45568
Q ss_pred CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160 112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 191 (316)
Q Consensus 112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~ 191 (316)
+|+|.+||++.-+ ..+-++.+.||.+...-.-+-. .+....++++++|-..+||.++.|.++.+++
T Consensus 320 ~gkikLyD~R~~K-------------~~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 320 TGKIKLYDLRATK-------------CKKSVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred cCceeEeeehhhh-------------cccceeeeeccccccccccccc-ccccceEEEccCeeEEEEEecccCceeeccC
Confidence 9999999998751 1123788999987633333333 6677889999999999999999999998886
Q ss_pred cC
Q 021160 192 GD 193 (316)
Q Consensus 192 ~~ 193 (316)
..
T Consensus 386 f~ 387 (425)
T KOG2695|consen 386 FP 387 (425)
T ss_pred CC
Confidence 43
No 277
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.86 E-value=2.8e-07 Score=73.17 Aligned_cols=177 Identities=14% Similarity=0.220 Sum_probs=124.7
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecC
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND 112 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d 112 (316)
+.+++++++.+.. ..|++|-..|++.-+.+...- ...........|...+..+-|+-..+.+++ +.|
T Consensus 68 P~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedf-----------nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~d 135 (404)
T KOG1409|consen 68 PSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDF-----------NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKD 135 (404)
T ss_pred CCCceEeeeeccc-eEEEEEEecceEEEEEhhhhh-----------hhcchhhhhhhhhcceeeEEecCCceeEEEeccc
Confidence 5689999999987 899999999999988875321 000122223578888888888877776666 455
Q ss_pred CcEEEEEcCCCCC-----------CCCccCCc--------------cccccCCCcceeeCCcCCceeeeEEEecCCCcEE
Q 021160 113 ELVYLFEKNMGLG-----------PSPLSLSP--------------EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 167 (316)
Q Consensus 113 ~~i~iwd~~~~~~-----------~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 167 (316)
..+.---.+.+.. +.+.-+.. -......++.++.+|... +.+++| .+....+
T Consensus 136 k~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~--~~~l~W-d~~~~~L 212 (404)
T KOG1409|consen 136 KQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE--VTCLKW-DPGQRLL 212 (404)
T ss_pred cceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccc--eEEEEE-cCCCcEE
Confidence 5544333332210 00000000 002223456677889877 999999 8999999
Q ss_pred EEeccCCeEEEEeccCCe-eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160 168 MSGSDCGHLFIWKKKGGK-LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 225 (316)
Q Consensus 168 ~~~~~dg~v~~wd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~ 225 (316)
.+|..|..+.+||+--.+ ....+.+|...|..++.-+.-+.+.+++.||.|.+|+...
T Consensus 213 fSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 213 FSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 999999999999986433 2456678999999998888888899999999999999764
No 278
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=9.9e-09 Score=81.26 Aligned_cols=147 Identities=14% Similarity=0.165 Sum_probs=109.8
Q ss_pred eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC-
Q 021160 106 LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG- 184 (316)
Q Consensus 106 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~- 184 (316)
.++.|.+..|.+-|++++ ..+.|.. . ..|.++.| ...++++..|+.+|.|..+|++..
T Consensus 227 hfs~G~sqqv~L~nvetg-----------------~~qsf~s-k--sDVfAlQf-~~s~nLv~~GcRngeI~~iDLR~rn 285 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETG-----------------HQQSFQS-K--SDVFALQF-AGSDNLVFNGCRNGEIFVIDLRCRN 285 (425)
T ss_pred eecccccceeEEEEeecc-----------------ccccccc-c--hhHHHHHh-cccCCeeEecccCCcEEEEEeeecc
Confidence 344467888888898887 4455552 2 23888888 777899999999999999999864
Q ss_pred ----eeEEEeecCccceEEEEEcC-CCCeEEEEeCCCcEEEecCCCCC----CCCCCCCcccceee-eecCCCCceeEEe
Q 021160 185 ----KLVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKA-NKQGREDHSRITL 254 (316)
Q Consensus 185 ----~~~~~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~s~ 254 (316)
.+...+ -|.+.|+++..-. ++++|++.+.+|+|++||.+..+ +.+..+|....... +...++...++++
T Consensus 286 qG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~ 364 (425)
T KOG2695|consen 286 QGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV 364 (425)
T ss_pred cCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEc
Confidence 333444 3888899988766 67788888999999999998654 55666776554222 2234567788999
Q ss_pred cCCCeEEEEEecccCcceeE
Q 021160 255 TPDVIMHVLRLQRRQTLAYR 274 (316)
Q Consensus 255 ~~d~~~~~w~~~~~~~~~~~ 274 (316)
+.|...|+|.+..++.+...
T Consensus 365 GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 365 GDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred cCeeEEEEEecccCceeecc
Confidence 99999999999988776443
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=3.1e-07 Score=79.78 Aligned_cols=233 Identities=12% Similarity=0.142 Sum_probs=136.4
Q ss_pred ceeeEEEEeeCCCcceEEE----eccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCC
Q 021160 2 VLFNMLFDLRSDSATRLFY----CSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT 77 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~----~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~ 77 (316)
+|.++|..+.+.....-.. ..+..-+...-||+..|.-+.|+.+. +.|-+...+|.|.+|-+-.+++
T Consensus 35 dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgsW-------- 105 (1189)
T KOG2041|consen 35 DGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGSW-------- 105 (1189)
T ss_pred cceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCCCceEEEEeeecccH--------
Confidence 5777777776543211111 11111111224899999999999987 7888889999999999998875
Q ss_pred CceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee
Q 021160 78 PVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG 156 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 156 (316)
+..-+-....+-|.+++|+.+|..++. ..||.|.+=.++... -.-+.+++.. ...
T Consensus 106 -----~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR---------------IwgKeLkg~~----l~h 161 (1189)
T KOG2041|consen 106 -----CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR---------------IWGKELKGQL----LAH 161 (1189)
T ss_pred -----HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce---------------ecchhcchhe----ccc
Confidence 333333556778999999999985555 578888766555431 0001111111 222
Q ss_pred EEEecC-------------------------------------------------------------CCcEEEEeccCCe
Q 021160 157 VNFFGP-------------------------------------------------------------NDEYVMSGSDCGH 175 (316)
Q Consensus 157 ~~~~~~-------------------------------------------------------------~~~~l~~~~~dg~ 175 (316)
+.| ++ +...++.+-.+|.
T Consensus 162 v~w-s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 162 VLW-SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred eee-cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 233 33 4445555555555
Q ss_pred EEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---------cEEEecCCCCCCCCCCCCcccceeeeecCC
Q 021160 176 LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---------TVKLWAPMPTDFPPLPDNAEKIMKANKQGR 246 (316)
Q Consensus 176 v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 246 (316)
+.+-.-........+.. .-.+..+.|+|+|..||.++.|. .|.+|..-+.-..++......+..+.|...
T Consensus 241 ~QiMR~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~ 319 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGT 319 (1189)
T ss_pred ehhhhhcCCCCCeEEec-ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCC
Confidence 54443222111111111 13577889999999999888653 566676655555666656666666664333
Q ss_pred CCceeEEecCCCeEEEEEecccCcc
Q 021160 247 EDHSRITLTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 247 ~~~~~~s~~~d~~~~~w~~~~~~~~ 271 (316)
.+.++...|+.+.+-+++..-+.
T Consensus 320 --gLriA~AvdsfiyfanIRP~ykW 342 (1189)
T KOG2041|consen 320 --GLRIAIAVDSFIYFANIRPEYKW 342 (1189)
T ss_pred --ceEEEEEecceEEEEeecccceE
Confidence 24445555666666666554333
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.86 E-value=4.4e-07 Score=69.77 Aligned_cols=146 Identities=10% Similarity=-0.034 Sum_probs=100.6
Q ss_pred cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCc--ccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCC
Q 021160 48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN--IHITGLAYSNTSELLIS-YNDELVYLFEKNMGL 124 (316)
Q Consensus 48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~ 124 (316)
.-+..++.|.++++.++..+.. ... -|. -.+.+++++++++++++ +....|..|.++...
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~--------------~~~---~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s 191 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSN--------------KFA---VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES 191 (344)
T ss_pred cceeeccCCcceeEEEEecCcc--------------cce---eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc
Confidence 3566778888888888875531 111 122 23788999999999888 677889999887641
Q ss_pred CCCCccCCccccccCCCcceee-CCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee-EE----EeecCccceE
Q 021160 125 GPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VR----LMVGDRHVVN 198 (316)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~-~~----~~~~~~~~v~ 198 (316)
........ ...+. -.+..| +.....+|+++.||++.|||++.-.. .. +-+.|.+.+.
T Consensus 192 --------------ey~~~~~~a~t~D~--gF~~S~-s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R 254 (344)
T KOG4532|consen 192 --------------EYIENIYEAPTSDH--GFYNSF-SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFR 254 (344)
T ss_pred --------------ceeeeeEecccCCC--ceeeee-ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceE
Confidence 02223222 22222 466777 88888999999999999999886432 22 2245889999
Q ss_pred EEEEcCCCCe--EEEEeCCCcEEEecCCCCC
Q 021160 199 QLEPHPHIPM--FATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 199 ~~~~~p~~~~--l~s~~~d~~i~iwd~~~~~ 227 (316)
.+.|+|.|.. |...-.-+.+.+-|+++..
T Consensus 255 ~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 255 VCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred EEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 9999997765 3333345678999998875
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.85 E-value=1.3e-06 Score=68.07 Aligned_cols=167 Identities=15% Similarity=0.229 Sum_probs=104.1
Q ss_pred eEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-------CeEEE
Q 021160 37 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-------ELLIS 109 (316)
Q Consensus 37 v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~l~s 109 (316)
=.-++|+|++ .+||.+...|+|++||+....+..... ... ....-...|..+.|.+.. ++|+.
T Consensus 46 WRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~I~p----~~~-----~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi 115 (282)
T PF15492_consen 46 WRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFVIPP----AMS-----FPGDLSDAIAGLIFLEYKKSAQWSYELLVI 115 (282)
T ss_pred heEEEECCCC-cEEEEEcCCCeEEEEecccceeEEcCc----ccc-----cCCccccceeeeEeeccccccccceeEEEE
Confidence 4579999999 899999999999999998654321110 000 112224566677665432 36666
Q ss_pred ecCCcEEEEEcCCCCCCCCccCCccccccCCCccee--eC-CcCCceeeeEEEecCCCcEEEEeccCC-----------e
Q 021160 110 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY--SG-HRNSQTVKGVNFFGPNDEYVMSGSDCG-----------H 175 (316)
Q Consensus 110 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg-----------~ 175 (316)
..+|.++-|-+..+.. +..+....| .. +..+ |.++.| +|..++|+.|+... -
T Consensus 116 ~Y~G~L~Sy~vs~gt~-----------q~y~e~hsfsf~~~yp~G--i~~~vy-~p~h~LLlVgG~~~~~~~~s~a~~~G 181 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGTN-----------QGYQENHSFSFSSHYPHG--INSAVY-HPKHRLLLVGGCEQNQDGMSKASSCG 181 (282)
T ss_pred eccceeeeEEEEcccC-----------CcceeeEEEEecccCCCc--eeEEEE-cCCCCEEEEeccCCCCCccccccccC
Confidence 6788877766532200 000122222 22 2434 999998 88888887776411 2
Q ss_pred EEEEeccCCeeE--------------------EEe---------ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160 176 LFIWKKKGGKLV--------------------RLM---------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 226 (316)
Q Consensus 176 v~~wd~~~~~~~--------------------~~~---------~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~ 226 (316)
+.-|.+-++.+. ..+ ......|..|..||++..||+...+|.|.+|++..-
T Consensus 182 LtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 182 LTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 445553322110 000 112467899999999999999999999999999876
Q ss_pred C
Q 021160 227 D 227 (316)
Q Consensus 227 ~ 227 (316)
.
T Consensus 262 ~ 262 (282)
T PF15492_consen 262 R 262 (282)
T ss_pred h
Confidence 5
No 282
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.82 E-value=2.7e-06 Score=70.48 Aligned_cols=212 Identities=12% Similarity=0.092 Sum_probs=128.0
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe-c-CCcEEEEeCcCCcccCCCCCCCCc
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-S-DEYARVYDIRKCHWYSPISSDTPV 79 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~-~-dg~v~~wd~~~~~~~~~~~~~~~~ 79 (316)
.+.|.+||+.+.+....+.....++.. ....-..++++|+| +++++.. . +..|.+.|+.+++...++..+...
T Consensus 76 ~d~V~v~D~~t~~~~~~i~~p~~p~~~----~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~ 150 (352)
T TIGR02658 76 TDYVEVIDPQTHLPIADIELPEGPRFL----VGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY 150 (352)
T ss_pred CCEEEEEECccCcEEeEEccCCCchhh----ccCccceEEECCCC-CEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc
Confidence 367999999998877666653221000 01123478999999 6676554 4 799999999999987765433322
Q ss_pred eeccccc------ccCC----------CcccEEEE--------------EEcc-CCCeEEEecCCcEEEEEcCCCCCCCC
Q 021160 80 DTFCPRH------LIGK----------NNIHITGL--------------AYSN-TSELLISYNDELVYLFEKNMGLGPSP 128 (316)
Q Consensus 80 ~~~~~~~------~~~~----------~~~~i~~~--------------~~~~-~~~~l~s~~d~~i~iwd~~~~~~~~~ 128 (316)
..+.... ...+ ........ .|.+ +|+.+..+..|+|.+.|+.....
T Consensus 151 ~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~--- 227 (352)
T TIGR02658 151 HIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDA--- 227 (352)
T ss_pred EEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcc---
Confidence 1111000 0000 00001111 2334 67766665559999999654310
Q ss_pred ccCCccccccCCCcceeeCC-----cCCceeeeEEEecCCCcEEEEec----------cCCeEEEEeccCCeeEEEeecC
Q 021160 129 LSLSPEDLQKREEPQVYSGH-----RNSQTVKGVNFFGPNDEYVMSGS----------DCGHLFIWKKKGGKLVRLMVGD 193 (316)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~l~~~~----------~dg~v~~wd~~~~~~~~~~~~~ 193 (316)
........+... -.+..+.-+++ +++++.++... ..+.|.++|..+++.+..+..
T Consensus 228 --------~~~~~~~~~~~~~~~~~wrP~g~q~ia~-~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v- 297 (352)
T TIGR02658 228 --------KFLPAIEAFTEAEKADGWRPGGWQQVAY-HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL- 297 (352)
T ss_pred --------eecceeeeccccccccccCCCcceeEEE-cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-
Confidence 000111111110 00111344888 88888887743 125799999999999998874
Q ss_pred ccceEEEEEcCCCC-eEEEEe-CCCcEEEecCCCCC-CCCC
Q 021160 194 RHVVNQLEPHPHIP-MFATCG-IEKTVKLWAPMPTD-FPPL 231 (316)
Q Consensus 194 ~~~v~~~~~~p~~~-~l~s~~-~d~~i~iwd~~~~~-~~~~ 231 (316)
...+..++++|+++ .|.+.+ .++.|.+.|..+.+ +.++
T Consensus 298 G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 298 GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 34788999999999 766555 67889999998886 4444
No 283
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.81 E-value=6.2e-08 Score=73.98 Aligned_cols=126 Identities=13% Similarity=0.239 Sum_probs=83.6
Q ss_pred ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-C-eEEEecCC
Q 021160 36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-E-LLISYNDE 113 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-~l~s~~d~ 113 (316)
.|.+++-+|..++++++|+.||.+.+||.+... .+..++..|+.+|+.+-|+|.. . +|.++.||
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~--------------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG 246 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA--------------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG 246 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEccccc--------------chHHHHHHhhhhhhheeccCCCchheeEecCCC
Confidence 499999999887899999999999999999765 3444458899999999999976 3 66667899
Q ss_pred cEEEEEcCCCCC---CCCccCCccccccCCCcce---eeCCcC-C-ceeeeEEEecCCCcEEEEeccCCeEEEEe
Q 021160 114 LVYLFEKNMGLG---PSPLSLSPEDLQKREEPQV---YSGHRN-S-QTVKGVNFFGPNDEYVMSGSDCGHLFIWK 180 (316)
Q Consensus 114 ~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~-~-~~i~~~~~~~~~~~~l~~~~~dg~v~~wd 180 (316)
.+..||..+..- +.....++| +..- +++. +.+-.. . ..|.++ .--|..+++|++-+.|++++
T Consensus 247 slw~wdas~~~l~i~~~~s~~s~W-LsgD-~v~s~i~i~~ll~~~~~Sinsf---DV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 247 SLWHWDASTTFLSISNQASVISSW-LSGD-PVKSRIEITSLLPSRSLSINSF---DVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cEEEEcCCCceEEecCcccccccc-ccCC-cccceEeeeccccccceeeeee---eccCceEEeccccceEEEec
Confidence 999999875321 111111111 1110 1111 111100 0 113443 34588999999999888875
No 284
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.80 E-value=2.1e-06 Score=80.49 Aligned_cols=206 Identities=11% Similarity=0.087 Sum_probs=121.0
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCC-------CCCCce-------ec-------------cccc
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS-------SDTPVD-------TF-------------CPRH 86 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~-------~~~~~~-------~~-------------~~~~ 86 (316)
..+|.+++|+|++ .+++..+.++++.+.+.. .+.+.+.. ...++. +. ...+
T Consensus 120 d~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 120 DSGILAASWSPDE-ELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred cCcEEEEEECCCc-CEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 4589999999999 899988888988876532 22111110 000110 00 0000
Q ss_pred -------ccCCCcccEEEEEEccCCCeEEEe-c---C---CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCc
Q 021160 87 -------LIGKNNIHITGLAYSNTSELLISY-N---D---ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 152 (316)
Q Consensus 87 -------~~~~~~~~i~~~~~~~~~~~l~s~-~---d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (316)
... +...-..++|-.||+++|.+ - . ..+++|+-+.. ++....... .
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~------------------L~stSE~v~-g 257 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE------------------LQSTSEPVD-G 257 (928)
T ss_pred CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce------------------EEeccccCC-C
Confidence 111 34466789999999988773 2 3 46889986531 222221111 1
Q ss_pred eeeeEEEecCCCcEEEEecc---CCeEEEEeccCCeeEEEee----cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160 153 TVKGVNFFGPNDEYVMSGSD---CGHLFIWKKKGGKLVRLMV----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 225 (316)
Q Consensus 153 ~i~~~~~~~~~~~~l~~~~~---dg~v~~wd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~ 225 (316)
--.+++| .|.|++||+.-. ...|.+|.-+ |-.-..|. .....|..++|++++..||..-.|. |.+|-..+
T Consensus 258 Le~~l~W-rPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 258 LEGALSW-RPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred ccCCccC-CCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence 1346788 999999988754 4457777643 33333332 3456899999999999999877554 99998876
Q ss_pred CC---CCCCCCC-cccceeeeecCC-CCceeEEecCCCeEEEEEe
Q 021160 226 TD---FPPLPDN-AEKIMKANKQGR-EDHSRITLTPDVIMHVLRL 265 (316)
Q Consensus 226 ~~---~~~~~~~-~~~~~~~~~~~~-~~~~~~s~~~d~~~~~w~~ 265 (316)
.. .+.+.-. ...+.. ..|++ +...+...+.++.+...++
T Consensus 335 YHWYLKqei~~~~~~~~~~-~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 335 YHWYLKQEIRFSSSESVNF-VKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CEEEEEEEEEccCCCCCCc-eEECCCCCCEEEEEecCCcEEEEEE
Confidence 54 1122211 112222 34666 4555666666566655544
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.79 E-value=7.9e-07 Score=84.72 Aligned_cols=186 Identities=10% Similarity=0.023 Sum_probs=111.2
Q ss_pred EEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEEE-ecCCcE
Q 021160 38 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELV 115 (316)
Q Consensus 38 ~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i 115 (316)
..++|+|++..++++...++.|++||..++....... ................-.....++++|++. ++++ ..++.|
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G-~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSG-DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEec-CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 5789999553777887888999999998765321000 000000000000001123456799999997 5555 468999
Q ss_pred EEEEcCCCCCCCCccCCccccccCCCcceeeCCc------CCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160 116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR------NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189 (316)
Q Consensus 116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~ 189 (316)
++||+.++....... .+.........+.... .......+++ +++|..+++-+.++.|++||..++.....
T Consensus 765 rv~D~~tg~~~~~~g---g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvav-d~dG~LYVADs~N~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 765 RALDLKTGGSRLLAG---GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLC-AKDGQIYVADSYNHKIKKLDPATKRVTTL 840 (1057)
T ss_pred EEEECCCCcEEEEEe---cccccCcccccccCCCCchhhhhccCCceeeE-eCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 999987652000000 0000000000000000 0011457888 89999888889999999999987765432
Q ss_pred ee-------------cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 021160 190 MV-------------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 228 (316)
Q Consensus 190 ~~-------------~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~ 228 (316)
.. +.-.....++++++|+.+++.+.++.|++||+.++..
T Consensus 841 aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 841 AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 21 1112567899999999888888999999999987653
No 286
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.76 E-value=4.8e-07 Score=71.04 Aligned_cols=230 Identities=16% Similarity=0.216 Sum_probs=135.2
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccc----c--CCCcccEEEEEEccCCC--
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL----I--GKNNIHITGLAYSNTSE-- 105 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~i~~~~~~~~~~-- 105 (316)
...|+++.|...| .|+++|...|.|.+|.-.... ..+... ...|....+ . -.-...|..+.|..++.
T Consensus 26 ad~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~-~ceykf---~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~ 100 (460)
T COG5170 26 ADKITAVEFDETG-LYLATGDKGGRVVLFEREKSY-GCEYKF---FTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN 100 (460)
T ss_pred cceeeEEEecccc-ceEeecCCCceEEEeeccccc-ccchhh---hhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence 4579999999999 899999999999999876433 000000 000000000 0 01134688888877653
Q ss_pred -eEEEecCCcEEEEEcCCCC------------------CCCCc--cCCc-----cc-cccCCCccee-eCCcCCceeeeE
Q 021160 106 -LLISYNDELVYLFEKNMGL------------------GPSPL--SLSP-----ED-LQKREEPQVY-SGHRNSQTVKGV 157 (316)
Q Consensus 106 -~l~s~~d~~i~iwd~~~~~------------------~~~~~--~~~~-----~~-~~~~~~~~~~-~~~~~~~~i~~~ 157 (316)
+|+++.|++|++|.+.... ++... .+.. .+ +-..++.+.+ ..|+-- +.++
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh--iNSi 178 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH--INSI 178 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE--eeee
Confidence 8888999999999997652 10000 0000 00 0001122222 334433 8889
Q ss_pred EEecCCCcEEEEeccCCeEEEEeccCCe---eEEEeecCc-----cceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCC-
Q 021160 158 NFFGPNDEYVMSGSDCGHLFIWKKKGGK---LVRLMVGDR-----HVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD- 227 (316)
Q Consensus 158 ~~~~~~~~~l~~~~~dg~v~~wd~~~~~---~~~~~~~~~-----~~v~~~~~~p~~~-~l~s~~~d~~i~iwd~~~~~- 227 (316)
.| ..+.+.++++ +|=.|-+|++.-.. .+--++.|. ..|++..|||... .+.-.+..|.|++-|++...
T Consensus 179 S~-NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al 256 (460)
T COG5170 179 SF-NSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL 256 (460)
T ss_pred ee-cCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence 98 6777777665 57789999976432 233334443 4689999999754 46667779999999998432
Q ss_pred ------CCCCC--C-----Ccccc--eeeeecCCCCceeEEecCCCeEEEEEecccCccee
Q 021160 228 ------FPPLP--D-----NAEKI--MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY 273 (316)
Q Consensus 228 ------~~~~~--~-----~~~~~--~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~ 273 (316)
+..+. + ....+ ++...+++.++++++-+ =-++++||+...+.++.
T Consensus 257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pik 316 (460)
T COG5170 257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIK 316 (460)
T ss_pred ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCce
Confidence 11111 1 01111 23334666777777644 36789999987655543
No 287
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.74 E-value=1.9e-05 Score=63.25 Aligned_cols=217 Identities=11% Similarity=0.054 Sum_probs=129.7
Q ss_pred EEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEc-cCCCeEEEecCCcEEE
Q 021160 39 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYL 117 (316)
Q Consensus 39 ~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~d~~i~i 117 (316)
+..|.+....++++-...+.|..|+..+++.. . . . ......+++. +++.++++.. +.+.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~--------------~-~-~--~~~~~G~~~~~~~g~l~v~~~-~~~~~ 64 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE--------------V-I-D--LPGPNGMAFDRPDGRLYVADS-GGIAV 64 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE--------------E-E-E--SSSEEEEEEECTTSEEEEEET-TCEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE--------------E-E-e--cCCCceEEEEccCCEEEEEEc-CceEE
Confidence 67889844378888778899999999877521 1 1 1 1115667777 6666666654 44555
Q ss_pred EEcCCCCCCCCccCCccccccCCCcceeeC--Cc-CCceeeeEEEecCCCcEEEEeccC--------CeEEEEeccCCee
Q 021160 118 FEKNMGLGPSPLSLSPEDLQKREEPQVYSG--HR-NSQTVKGVNFFGPNDEYVMSGSDC--------GHLFIWKKKGGKL 186 (316)
Q Consensus 118 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~i~~~~~~~~~~~~l~~~~~d--------g~v~~wd~~~~~~ 186 (316)
+|..++ +....... .. .....+.+++ .++|.+.++.... |.+..++.. ++.
T Consensus 65 ~d~~~g----------------~~~~~~~~~~~~~~~~~~ND~~v-d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~ 126 (246)
T PF08450_consen 65 VDPDTG----------------KVTVLADLPDGGVPFNRPNDVAV-DPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV 126 (246)
T ss_dssp EETTTT----------------EEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE
T ss_pred EecCCC----------------cEEEEeeccCCCcccCCCceEEE-cCCCCEEEEecCCCccccccccceEEECCC-CeE
Confidence 588776 22222221 11 2234889998 9999977776543 568888877 664
Q ss_pred EEEeecCccceEEEEEcCCCCeE-EEEeCCCcEEEecCCCCCC--------CCCCCCcccceeeeecCCCCceeEEecCC
Q 021160 187 VRLMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDF--------PPLPDNAEKIMKANKQGREDHSRITLTPD 257 (316)
Q Consensus 187 ~~~~~~~~~~v~~~~~~p~~~~l-~s~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~s~~~d 257 (316)
..... .-...+.++|+|+++.| ++-+..+.|..+++..... ..+..... ...-.....++++.++....
T Consensus 127 ~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-~pDG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 127 TVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPG-YPDGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp EEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC-EEEEEEEBTTS-EEEEEETT
T ss_pred EEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCc-CCCcceEcCCCCEEEEEcCC
Confidence 44333 34567899999999875 4667778888888853321 11111111 12223356678888888888
Q ss_pred CeEEEEEecccCcceeEEee-cccccccc-cCCCCeEEEE
Q 021160 258 VIMHVLRLQRRQTLAYRERR-YNAADFES-DEEEGETYLL 295 (316)
Q Consensus 258 ~~~~~w~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~v~~~ 295 (316)
+.|.+++.. ++........ +....++. +.+..++|+.
T Consensus 205 ~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 205 GRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp TEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred CEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 989989866 5444333222 33344444 3444566654
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=1.4e-07 Score=79.47 Aligned_cols=220 Identities=12% Similarity=0.087 Sum_probs=137.0
Q ss_pred ceeeEEEEeeCCCc-ce---EEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCC
Q 021160 2 VLFNMLFDLRSDSA-TR---LFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT 77 (316)
Q Consensus 2 ~g~v~vwd~~~~~~-~~---~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~ 77 (316)
+.+|++|.++...- .+ +.... ..|+.+|.++.|-.+. +++++ .||.|++||.-.++....+
T Consensus 756 DKTVKLWSik~EgD~~~tsaCQfTY--------~aHkk~i~~igfL~~l-r~i~S--cD~giHlWDPFigr~Laq~---- 820 (1034)
T KOG4190|consen 756 DKTVKLWSIKPEGDEIGTSACQFTY--------QAHKKPIHDIGFLADL-RSIAS--CDGGIHLWDPFIGRLLAQM---- 820 (1034)
T ss_pred CceEEEEEeccccCccccceeeeEh--------hhccCcccceeeeecc-ceeee--ccCcceeecccccchhHhh----
Confidence 57899999975321 11 11111 1389999999999877 67765 4899999998766532110
Q ss_pred CceecccccccCCCcccEEEEEEccCCCeEE-Ee-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC--cCC-c
Q 021160 78 PVDTFCPRHLIGKNNIHITGLAYSNTSELLI-SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--RNS-Q 152 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~ 152 (316)
......+....|.|+. +-+..+++ .+ ...+|+++|.+.. .....++.. ..+ .
T Consensus 821 ------~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsc----------------e~~~E~kVcna~~Pna 877 (1034)
T KOG4190|consen 821 ------EDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSC----------------EWTCELKVCNAPGPNA 877 (1034)
T ss_pred ------hcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccc----------------cceeeEEeccCCCCch
Confidence 0000012223344442 21333444 33 5899999999876 233223211 111 2
Q ss_pred eeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEE-ecCCCCC-CCC
Q 021160 153 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL-WAPMPTD-FPP 230 (316)
Q Consensus 153 ~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~i-wd~~~~~-~~~ 230 (316)
.+.+++. .+.|+.++.+-.+|.+.+.|.++|+.+.....-......++ .|..+.++....|.++.+ |..-.+. ..+
T Consensus 878 ~~R~iaV-a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 878 LTRAIAV-ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred heeEEEe-ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeec
Confidence 3788888 89999999999999999999999999887765555555554 356667888888999998 8766554 222
Q ss_pred CCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160 231 LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 264 (316)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~ 264 (316)
......+..-+ ..-+..+++......+.++.
T Consensus 956 ~kpppepahfl---qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 956 DKPPPEPAHFL---QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred cCCCCcchhhh---hccCceeEEeccCcEEEEEe
Confidence 22222222111 11244677777777788775
No 289
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=4.1e-06 Score=70.87 Aligned_cols=110 Identities=11% Similarity=0.092 Sum_probs=73.5
Q ss_pred eeeEEEecCCCcEEEEecc---CCeEEEEeccC-C---eeEEEeecCccceEEEEEcCCCCeEEEE---eCCCcEEEecC
Q 021160 154 VKGVNFFGPNDEYVMSGSD---CGHLFIWKKKG-G---KLVRLMVGDRHVVNQLEPHPHIPMFATC---GIEKTVKLWAP 223 (316)
Q Consensus 154 i~~~~~~~~~~~~l~~~~~---dg~v~~wd~~~-~---~~~~~~~~~~~~v~~~~~~p~~~~l~s~---~~d~~i~iwd~ 223 (316)
|...+| .|.|+.+++-+. ..++.+|-+++ . +++..+. ....+.+.|+|.|++++.+ |..|.+..+|.
T Consensus 448 vi~FaW-EP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 448 VIAFAW-EPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred eeeeee-ccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEec
Confidence 566677 788887766543 45688888773 2 2333333 2456889999999997765 45688999998
Q ss_pred CCCC--CCCCCCCcccceeeeecCCCCceeEEecCC------CeEEEEEeccc
Q 021160 224 MPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPD------VIMHVLRLQRR 268 (316)
Q Consensus 224 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d------~~~~~w~~~~~ 268 (316)
.-.. ....+.|. ..+-..|.|.|+++++++.- .-.++|+++..
T Consensus 525 ~~a~~k~~~~~eh~--~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 525 DYADLKDTASPEHF--AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred chhhhhhccCcccc--ccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 7533 22233333 33455589999999998764 55678887643
No 290
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.71 E-value=3e-06 Score=70.42 Aligned_cols=144 Identities=12% Similarity=0.115 Sum_probs=107.2
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCC-cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDE-YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 109 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg-~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 109 (316)
.+|.+.|.-..+..++ +-++.|..|| .+-++|.++++.. .+ ...-+.|.++..+++|++++.
T Consensus 356 v~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~k---------------r~-e~~lg~I~av~vs~dGK~~vv 418 (668)
T COG4946 356 VGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVK---------------RI-EKDLGNIEAVKVSPDGKKVVV 418 (668)
T ss_pred cCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEE---------------Ee-eCCccceEEEEEcCCCcEEEE
Confidence 4688899999998877 6899999999 8999999988621 11 334578999999999998777
Q ss_pred ec-CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCC----eEEEEeccCC
Q 021160 110 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG----HLFIWKKKGG 184 (316)
Q Consensus 110 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----~v~~wd~~~~ 184 (316)
++ ...+.+.|++++ . ++.+.. ....-|+.+.| +|+++++|-+--+| .|+++|+..+
T Consensus 419 aNdr~el~vididng----------------n-v~~idk-S~~~lItdf~~-~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 419 ANDRFELWVIDIDNG----------------N-VRLIDK-SEYGLITDFDW-HPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EcCceEEEEEEecCC----------------C-eeEecc-cccceeEEEEE-cCCceeEEEecCcceeeeeEEEEecCCC
Confidence 64 677999999988 2 333322 22234999999 99999999887655 5899999988
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEE
Q 021160 185 KLVRLMVGDRHVVNQLEPHPHIPMFAT 211 (316)
Q Consensus 185 ~~~~~~~~~~~~v~~~~~~p~~~~l~s 211 (316)
+....- ...+-=.+-+|.|++++|.-
T Consensus 480 Kiy~vT-T~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 480 KIYDVT-TPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred eEEEec-CCcccccCcccCCCCcEEEE
Confidence 865433 22333356788999987543
No 291
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.68 E-value=5.5e-06 Score=65.95 Aligned_cols=217 Identities=11% Similarity=0.035 Sum_probs=125.3
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCcee
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 81 (316)
.|+|..||+++.+.......... .. ...+..+ +.+ ..+++++.++.|..||..+++.......+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~--------~~-~~~~~~~-~~~-~~v~~~~~~~~l~~~d~~tG~~~W~~~~~----- 65 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG--------IG-GPVATAV-PDG-GRVYVASGDGNLYALDAKTGKVLWRFDLP----- 65 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS--------CS-SEEETEE-EET-TEEEEEETTSEEEEEETTTSEEEEEEECS-----
T ss_pred CCEEEEEECCCCCEEEEEECCCC--------CC-CccceEE-EeC-CEEEEEcCCCEEEEEECCCCCEEEEeecc-----
Confidence 58899999988776555544210 01 1221122 234 46777789999999999999843221110
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCccee-eCCcCC-c--eeeeE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-SGHRNS-Q--TVKGV 157 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~i~~~ 157 (316)
...... ....++.+++...++.++.+|..++ +..... ...... . .....
T Consensus 66 -------~~~~~~----~~~~~~~v~v~~~~~~l~~~d~~tG----------------~~~W~~~~~~~~~~~~~~~~~~ 118 (238)
T PF13360_consen 66 -------GPISGA----PVVDGGRVYVGTSDGSLYALDAKTG----------------KVLWSIYLTSSPPAGVRSSSSP 118 (238)
T ss_dssp -------SCGGSG----EEEETTEEEEEETTSEEEEEETTTS----------------CEEEEEEE-SSCTCSTB--SEE
T ss_pred -------ccccce----eeecccccccccceeeeEecccCCc----------------ceeeeeccccccccccccccCc
Confidence 110111 1233445555667889999998888 455442 222110 0 12223
Q ss_pred EEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccc----------e-EEEEEcCCCCeEEEEeCCCc-EEEecCCC
Q 021160 158 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV----------V-NQLEPHPHIPMFATCGIEKT-VKLWAPMP 225 (316)
Q Consensus 158 ~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~----------v-~~~~~~p~~~~l~s~~~d~~-i~iwd~~~ 225 (316)
.+ .+..++.+..++.+..+|+++|+.+......... + ..+.+. ++ .+..++.++. +.+ |+.+
T Consensus 119 ~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~t 192 (238)
T PF13360_consen 119 AV---DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLAT 192 (238)
T ss_dssp EE---ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTT
T ss_pred eE---ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCC
Confidence 22 3778888888999999999999998877654322 1 223333 34 6556666775 555 9988
Q ss_pred CCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCc
Q 021160 226 TDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 270 (316)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~ 270 (316)
++.. ........... ...++..++..+.++.+..||+.+++.
T Consensus 193 g~~~-w~~~~~~~~~~--~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 193 GEKL-WSKPISGIYSL--PSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp TEEE-EEECSS-ECEC--EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred CCEE-EEecCCCccCC--ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 8722 11111111111 223455666666899999999988744
No 292
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.61 E-value=9.4e-06 Score=76.25 Aligned_cols=210 Identities=11% Similarity=0.123 Sum_probs=131.1
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEE----eCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVY----DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 109 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~w----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 109 (316)
...|.++.+-++. ..++.+..+|.|.+. +.....+ .....-...|.+++||||+++|+.
T Consensus 75 ~~~ivs~~yl~d~-~~l~~~~~~Gdi~~~~~~~~~~~~~~----------------E~VG~vd~GI~a~~WSPD~Ella~ 137 (928)
T PF04762_consen 75 NDKIVSFQYLADS-ESLCIALASGDIILVREDPDPDEDEI----------------EIVGSVDSGILAASWSPDEELLAL 137 (928)
T ss_pred CCcEEEEEeccCC-CcEEEEECCceEEEEEccCCCCCcee----------------EEEEEEcCcEEEEEECCCcCEEEE
Confidence 4578899999988 788888999999999 5544331 111233678999999999997766
Q ss_pred -ecCCcEEEEEcCCCC---------------------CCCCccCCcccccc-----CCC------cceeeCCcCCceeee
Q 021160 110 -YNDELVYLFEKNMGL---------------------GPSPLSLSPEDLQK-----REE------PQVYSGHRNSQTVKG 156 (316)
Q Consensus 110 -~~d~~i~iwd~~~~~---------------------~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~~i~~ 156 (316)
+.++++.+.+-.-.. +.....+....-+. ..+ ...+. ..+. -..
T Consensus 138 vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~--~~~ 214 (928)
T PF04762_consen 138 VTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG--RVR 214 (928)
T ss_pred EeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC--ceE
Confidence 568887776532110 00000000000000 000 01111 2222 567
Q ss_pred EEEecCCCcEEEEecc---C---CeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEecCCCCC
Q 021160 157 VNFFGPNDEYVMSGSD---C---GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTD 227 (316)
Q Consensus 157 ~~~~~~~~~~l~~~~~---d---g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~---d~~i~iwd~~~~~ 227 (316)
++| -.||.++|+.+- . ..+++|+-+ |++......-.+--.+++|-|.|++||+.-. ...|.+|.-++.+
T Consensus 215 ISW-RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr 292 (928)
T PF04762_consen 215 ISW-RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR 292 (928)
T ss_pred EEE-CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE
Confidence 888 899999998774 2 579999977 7766555433344457899999999998763 3467788766544
Q ss_pred CC--CCC--CCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160 228 FP--PLP--DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 228 ~~--~~~--~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~ 267 (316)
.. .++ .....+..+. |+.++..|+....|. |++|-..+
T Consensus 293 hgeF~l~~~~~~~~v~~l~-Wn~ds~iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 293 HGEFTLRFDPEEEKVIELA-WNSDSEILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred eeeEecCCCCCCceeeEEE-ECCCCCEEEEEecCC-ceEEEeeC
Confidence 22 222 2334454444 888888888766555 99997665
No 293
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.61 E-value=2.9e-05 Score=66.44 Aligned_cols=214 Identities=13% Similarity=0.053 Sum_probs=120.5
Q ss_pred cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCC
Q 021160 48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 127 (316)
Q Consensus 48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~ 127 (316)
..++.++.++.+..+|..+++....... ...+.+.....++.+++...++.++.||.+++
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~----------------~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG---- 165 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKL----------------SSEVLSPPLVANGLVVVRTNDGRLTALDAATG---- 165 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeecc----------------CceeecCCEEECCEEEEECCCCeEEEEEcCCC----
Confidence 5677888899999999988874321110 11111111112345556567999999999887
Q ss_pred CccCCccccccCCCcceeeCCcCCce---eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCc--c-----ce
Q 021160 128 PLSLSPEDLQKREEPQVYSGHRNSQT---VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR--H-----VV 197 (316)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~--~-----~v 197 (316)
+.+..+........ ..+... . +..++.+..++.+..+|.++|+.+....... + ..
T Consensus 166 ------------~~~W~~~~~~~~~~~~~~~sp~~-~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~ 230 (377)
T TIGR03300 166 ------------ERLWTYSRVTPALTLRGSASPVI-A--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERL 230 (377)
T ss_pred ------------ceeeEEccCCCceeecCCCCCEE-E--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhh
Confidence 34433332211100 011112 1 3467788889999999999998765432110 0 00
Q ss_pred EEEEEcC--CCCeEEEEeCCCcEEEecCCCCCCC-CCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE
Q 021160 198 NQLEPHP--HIPMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR 274 (316)
Q Consensus 198 ~~~~~~p--~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~ 274 (316)
..+.-+| .+..+..++.++.++.||.++++.. ... ... .......+..+..++.++.+..+|..+++.+ +.
T Consensus 231 ~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~~~----~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~-W~ 304 (377)
T TIGR03300 231 VDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-ASS----YQGPAVDDNRLYVTDADGVVVALDRRSGSEL-WK 304 (377)
T ss_pred hccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec-cCC----ccCceEeCCEEEEECCCCeEEEEECCCCcEE-Ec
Confidence 0011111 2456777778999999999887621 111 110 0001123556777788999999998776432 21
Q ss_pred --Ee--------ecccccccccCCCCeEEEEeccCCCC
Q 021160 275 --ER--------RYNAADFESDEEEGETYLLGFSDSDA 302 (316)
Q Consensus 275 --~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~ 302 (316)
.. ......+...+.+|.+++++..+++.
T Consensus 305 ~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 305 NDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred cccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCE
Confidence 10 11233445556788899988776654
No 294
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.9e-06 Score=69.97 Aligned_cols=79 Identities=8% Similarity=0.129 Sum_probs=62.5
Q ss_pred CCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEE
Q 021160 30 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLI 108 (316)
Q Consensus 30 ~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 108 (316)
..+|...|..++|+|.+.-++..++.+.+|+|.|+++..+. ... ..+ ..+++.+|.-+.. ++.
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v--------------ssy-~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV--------------SSY-IAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceee--------------ehe-ecc-CCceeeeeccCCcceeE
Confidence 34678899999999988448899999999999999987522 111 333 6789999998875 666
Q ss_pred Ee-cCCcEEEEEcCCCC
Q 021160 109 SY-NDELVYLFEKNMGL 124 (316)
Q Consensus 109 s~-~d~~i~iwd~~~~~ 124 (316)
+| ..|.|++||++...
T Consensus 253 aGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EeccCceEEEEEccCCC
Confidence 66 69999999998775
No 295
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.57 E-value=1.8e-07 Score=51.22 Aligned_cols=38 Identities=24% Similarity=0.688 Sum_probs=34.8
Q ss_pred CCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEe
Q 021160 140 EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 180 (316)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd 180 (316)
++++.+.+|... |.+++| +|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~--i~~i~~-~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSS--INSIAW-SPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSS--EEEEEE-ETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCc--EEEEEE-ecccccceeeCCCCEEEEEC
Confidence 456789999977 999999 89999999999999999997
No 296
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=0.00023 Score=57.51 Aligned_cols=206 Identities=10% Similarity=0.141 Sum_probs=121.7
Q ss_pred EEEEECCCCCcEEEEEe-cCCcEEEEeCcC-CcccCCCCCCCCceecccccccCCC----cccEEEEEEccCCCeEEEe-
Q 021160 38 NAIVIDPRNPNYFAVGG-SDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKN----NIHITGLAYSNTSELLISY- 110 (316)
Q Consensus 38 ~~~~~~~~~~~~l~~g~-~dg~v~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~s~- 110 (316)
+.+++++++ ++++++. .-|.|.++-++. +.+... +... ...-...| ...+....+.|++++|++.
T Consensus 92 ~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~------v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D 163 (346)
T COG2706 92 CYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPV------VQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPD 163 (346)
T ss_pred eEEEECCCC-CEEEEEEccCceEEEEEcccCCccccc------eeee-ecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence 789999999 7777776 458899999865 332111 1100 00000011 1227788999999988875
Q ss_pred -cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-CCeEEEEeccCC-eeE
Q 021160 111 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGG-KLV 187 (316)
Q Consensus 111 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~~wd~~~~-~~~ 187 (316)
.-..|.+|++..+.. ..... ..+ ... .....+.| +|++++..+.++ +++|-+|..... ..+
T Consensus 164 LG~Dri~~y~~~dg~L-----------~~~~~-~~v-~~G--~GPRHi~F-Hpn~k~aY~v~EL~stV~v~~y~~~~g~~ 227 (346)
T COG2706 164 LGTDRIFLYDLDDGKL-----------TPADP-AEV-KPG--AGPRHIVF-HPNGKYAYLVNELNSTVDVLEYNPAVGKF 227 (346)
T ss_pred cCCceEEEEEcccCcc-----------ccccc-ccc-CCC--CCcceEEE-cCCCcEEEEEeccCCEEEEEEEcCCCceE
Confidence 466799999986620 00011 111 122 22788999 999999988776 899999998763 222
Q ss_pred EEeec---------CccceEEEEEcCCCCeEEEEe-CCCcEEEecCCCC--CCCC---CCCCcccceeeeecCCCCceeE
Q 021160 188 RLMVG---------DRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPT--DFPP---LPDNAEKIMKANKQGREDHSRI 252 (316)
Q Consensus 188 ~~~~~---------~~~~v~~~~~~p~~~~l~s~~-~d~~i~iwd~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~ 252 (316)
..++. .......+..+|+|++|..+. ....|-+|.+... ++.. ...+.......+ ..+.+++|+
T Consensus 228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~-i~~~g~~Li 306 (346)
T COG2706 228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFN-INPSGRFLI 306 (346)
T ss_pred EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccce-eCCCCCEEE
Confidence 22221 123567788999999987764 2336777766533 2111 111222122333 445566666
Q ss_pred EecC-CCeEEEEEeccc
Q 021160 253 TLTP-DVIMHVLRLQRR 268 (316)
Q Consensus 253 s~~~-d~~~~~w~~~~~ 268 (316)
.... +..+.++.....
T Consensus 307 aa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 307 AANQKSDNITVFERDKE 323 (346)
T ss_pred EEccCCCcEEEEEEcCC
Confidence 6554 356777766543
No 297
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.53 E-value=4.6e-05 Score=65.23 Aligned_cols=190 Identities=10% Similarity=0.011 Sum_probs=105.0
Q ss_pred cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCC
Q 021160 48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 127 (316)
Q Consensus 48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~ 127 (316)
..++.++.++.+..||.++++.........+.... .... +.... ++.+++...++.+..+|..++
T Consensus 146 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~------~~~~----sp~~~-~~~v~~~~~~g~v~ald~~tG---- 210 (377)
T TIGR03300 146 GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL------RGSA----SPVIA-DGGVLVGFAGGKLVALDLQTG---- 210 (377)
T ss_pred CEEEEECCCCeEEEEEcCCCceeeEEccCCCceee------cCCC----CCEEE-CCEEEEECCCCEEEEEEccCC----
Confidence 46677778999999999988743221111110000 0001 11111 233444456789999998877
Q ss_pred CccCCccccccCCCcceeeCC-c-CCc---eeeeEEEecC--CCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEE
Q 021160 128 PLSLSPEDLQKREEPQVYSGH-R-NSQ---TVKGVNFFGP--NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQL 200 (316)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~-~-~~~---~i~~~~~~~~--~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~ 200 (316)
+........ . ... .+..+.- +| .+..+++++.+|.++.+|..+|+.+...... .....
T Consensus 211 ------------~~~W~~~~~~~~g~~~~~~~~~~~~-~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p 275 (377)
T TIGR03300 211 ------------QPLWEQRVALPKGRTELERLVDVDG-DPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGP 275 (377)
T ss_pred ------------CEeeeeccccCCCCCchhhhhccCC-ccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCc
Confidence 222211100 0 000 0000000 11 3567888888999999999999877665421 11222
Q ss_pred EEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160 201 EPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 201 ~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~ 271 (316)
.. .+..+..++.||.+..+|..+++ +-............ ....+..++.++.+|.+.+++..+++..
T Consensus 276 ~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ss--p~i~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 276 AV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTA--PAVVGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred eE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCcccc--CEEECCEEEEEeCCCEEEEEECCCCCEE
Confidence 22 45667777889999999998876 22221111111000 0113557888899999999998877554
No 298
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.51 E-value=8.4e-06 Score=70.06 Aligned_cols=142 Identities=13% Similarity=0.115 Sum_probs=81.1
Q ss_pred ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcE
Q 021160 36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV 115 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i 115 (316)
....+.++|++ +.+++ ..||.-.++.....+ ....+......|.+.+++.+--...+|
T Consensus 34 ~p~~ls~npng-r~v~V-~g~geY~iyt~~~~r--------------------~k~~G~g~~~vw~~~n~yAv~~~~~~I 91 (443)
T PF04053_consen 34 YPQSLSHNPNG-RFVLV-CGDGEYEIYTALAWR--------------------NKAFGSGLSFVWSSRNRYAVLESSSTI 91 (443)
T ss_dssp --SEEEE-TTS-SEEEE-EETTEEEEEETTTTE--------------------EEEEEE-SEEEE-TSSEEEEE-TTS-E
T ss_pred CCeeEEECCCC-CEEEE-EcCCEEEEEEccCCc--------------------ccccCceeEEEEecCccEEEEECCCeE
Confidence 46899999999 77777 556888888743222 112345567889986665555568889
Q ss_pred EEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCcc
Q 021160 116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 195 (316)
Q Consensus 116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~ 195 (316)
.++.--.. .....+.... . +..+ | . |.+|...+. +.|.+||+.+++.++.+...
T Consensus 92 ~I~kn~~~----------------~~~k~i~~~~-~--~~~I-f-~--G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~-- 145 (443)
T PF04053_consen 92 KIYKNFKN----------------EVVKSIKLPF-S--VEKI-F-G--GNLLGVKSS-DFICFYDWETGKLIRRIDVS-- 145 (443)
T ss_dssp EEEETTEE-----------------TT-----SS----EEEE-E----SSSEEEEET-TEEEEE-TTT--EEEEESS---
T ss_pred EEEEcCcc----------------ccceEEcCCc-c--cceE-E-c--CcEEEEECC-CCEEEEEhhHcceeeEEecC--
Confidence 99632222 2223333221 1 4444 2 3 777766654 48999999999999998743
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160 196 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 226 (316)
Q Consensus 196 ~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~ 226 (316)
+|..+.|++++.+++..+. ..+.|++....
T Consensus 146 ~vk~V~Ws~~g~~val~t~-~~i~il~~~~~ 175 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTK-DSIYILKYNLE 175 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred CCcEEEEECCCCEEEEEeC-CeEEEEEecch
Confidence 4899999999999888874 47777765443
No 299
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.49 E-value=5.2e-08 Score=83.37 Aligned_cols=202 Identities=13% Similarity=0.190 Sum_probs=130.0
Q ss_pred cceEEEEECCCCC-cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEEEec-
Q 021160 35 IRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN- 111 (316)
Q Consensus 35 ~~v~~~~~~~~~~-~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~- 111 (316)
..+.|+++.-+.. .++++|..+|.|.+-.++...- .......+|..++++++|++-. +.||+|-
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagld 123 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------------SSAEVTPGYARPCTSLAWNELDTNHLAAGLD 123 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccc-------------ccceecccccccccccccccccHHHHHhhhh
Confidence 3566777655432 5788899999999998875431 1233446788999999999854 5777653
Q ss_pred ----CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeC-CcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC-e
Q 021160 112 ----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-K 185 (316)
Q Consensus 112 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~-~ 185 (316)
|..+.|||+.++.. .+ +....|.+ .... ..+++| -.+.+++.+|.....++++|++.. .
T Consensus 124 khrnds~~~Iwdi~s~lt----------vP--ke~~~fs~~~l~g--qns~cw-lrd~klvlaGm~sr~~~ifdlRqs~~ 188 (783)
T KOG1008|consen 124 KHRNDSSLKIWDINSLLT----------VP--KESPLFSSSTLDG--QNSVCW-LRDTKLVLAGMTSRSVHIFDLRQSLD 188 (783)
T ss_pred hhcccCCccceecccccC----------CC--ccccccccccccC--cccccc-ccCcchhhcccccchhhhhhhhhhhh
Confidence 67799999987621 00 11111222 2222 668888 688999999999999999999832 2
Q ss_pred eEEEeecCccceEEEEEcC-CCCeEEEEeCCCcEEEecC-CCCC--CCCCCCC----cccceeeeecCCCCceeEEecC-
Q 021160 186 LVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAP-MPTD--FPPLPDN----AEKIMKANKQGREDHSRITLTP- 256 (316)
Q Consensus 186 ~~~~~~~~~~~v~~~~~~p-~~~~l~s~~~d~~i~iwd~-~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~- 256 (316)
....+ .+..+..+...| ...++++-. |+.|.+||. +.-+ +..+... .+.+..+++.+.....+++...
T Consensus 189 ~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd 265 (783)
T KOG1008|consen 189 SVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD 265 (783)
T ss_pred hhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC
Confidence 12222 234566677888 667777766 999999993 3322 2222211 2236677755554445555554
Q ss_pred CCeEEEEEecc
Q 021160 257 DVIMHVLRLQR 267 (316)
Q Consensus 257 d~~~~~w~~~~ 267 (316)
.++|+.+++..
T Consensus 266 S~tIrlydi~~ 276 (783)
T KOG1008|consen 266 SITIRLYDICV 276 (783)
T ss_pred cceEEEecccc
Confidence 48889998764
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.49 E-value=0.0002 Score=56.17 Aligned_cols=204 Identities=12% Similarity=0.144 Sum_probs=111.3
Q ss_pred EEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEE
Q 021160 40 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLF 118 (316)
Q Consensus 40 ~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iw 118 (316)
++.+.+| ++||+ -.|..|.+-..+..- ..+. ....+...-.-.-..++|+||+.+||.+ +.|+|++|
T Consensus 3 ~~~~~~G-k~lAi-~qd~~iEiRsa~Ddf--------~si~--~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vf 70 (282)
T PF15492_consen 3 LALSSDG-KLLAI-LQDQCIEIRSAKDDF--------SSII--GKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVF 70 (282)
T ss_pred eeecCCC-cEEEE-EeccEEEEEeccCCc--------hhee--EEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEE
Confidence 4556677 55554 456666665544321 0110 1112223333456789999999998886 79999999
Q ss_pred EcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC-----CcEEEEeccCCeEEEEeccCC-----eeEE
Q 021160 119 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-----DEYVMSGSDCGHLFIWKKKGG-----KLVR 188 (316)
Q Consensus 119 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~l~~~~~dg~v~~wd~~~~-----~~~~ 188 (316)
|+..... ..+ .+...+.+.. ...|..+.|..+. ...|++-...|.++-|-+..+ +...
T Consensus 71 dl~g~~l--------f~I---~p~~~~~~d~-~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~h 138 (282)
T PF15492_consen 71 DLMGSEL--------FVI---PPAMSFPGDL-SDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENH 138 (282)
T ss_pred eccccee--------EEc---CcccccCCcc-ccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeE
Confidence 9975310 000 0111111111 1236667663222 234666677888877765322 2233
Q ss_pred Eee---cCccceEEEEEcCCCCeEEEEe-CCC----------cEEEecCCCCC------------C---------CCCC-
Q 021160 189 LMV---GDRHVVNQLEPHPHIPMFATCG-IEK----------TVKLWAPMPTD------------F---------PPLP- 232 (316)
Q Consensus 189 ~~~---~~~~~v~~~~~~p~~~~l~s~~-~d~----------~i~iwd~~~~~------------~---------~~~~- 232 (316)
.+. .+...|.++.++|..+.|+.|| ... -+.-|.+-.+. + ..+.
T Consensus 139 sfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~ 218 (282)
T PF15492_consen 139 SFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS 218 (282)
T ss_pred EEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc
Confidence 332 2467899999999988866554 222 24455432211 0 0000
Q ss_pred --------CCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 233 --------DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 233 --------~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
...+.++.+. .+|++..+++...+|.+.+|++..-
T Consensus 219 ~~~fs~~~~~~d~i~kmS-lSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 219 FKFFSRQGQEQDGIFKMS-LSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred eeeeeccccCCCceEEEE-ECCCCCEEEEEEcCCeEEEEecCcc
Confidence 1123333443 6778888888888888888887654
No 301
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.49 E-value=9.3e-05 Score=59.53 Aligned_cols=204 Identities=15% Similarity=0.142 Sum_probs=126.6
Q ss_pred ceEEEEECCCCCcEEEEEecCCc-EEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec---
Q 021160 36 RLNAIVIDPRNPNYFAVGGSDEY-ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--- 111 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g~~dg~-v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--- 111 (316)
....++.+|..+..++.+-.-|. ..+||..+++....+..+ .-+++ .+ --.|+++|++|.++.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~------~gRHF-yG------Hg~fs~dG~~LytTEnd~ 72 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP------PGRHF-YG------HGVFSPDGRLLYTTENDY 72 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC------CCCEE-ec------CEEEcCCCCEEEEecccc
Confidence 45678899976677777776655 677999988743221110 00111 22 356999999877752
Q ss_pred ---CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc----------------
Q 021160 112 ---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---------------- 172 (316)
Q Consensus 112 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------------- 172 (316)
.|.|-|||..... ..+..+..+.-. ...+.+ .|+++.|+++..
T Consensus 73 ~~g~G~IgVyd~~~~~---------------~ri~E~~s~GIG--PHel~l-~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 73 ETGRGVIGVYDAARGY---------------RRIGEFPSHGIG--PHELLL-MPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred CCCcEEEEEEECcCCc---------------EEEeEecCCCcC--hhhEEE-cCCCCEEEEEcCCCccCcccCceecChh
Confidence 5679999998431 456667666644 667777 899987776632
Q ss_pred --CCeEEEEeccCCeeEEE--e--ecCccceEEEEEcCCCCeEEEEeCCC-------cEEEecCCCCC-CCCCC-----C
Q 021160 173 --CGHLFIWKKKGGKLVRL--M--VGDRHVVNQLEPHPHIPMFATCGIEK-------TVKLWAPMPTD-FPPLP-----D 233 (316)
Q Consensus 173 --dg~v~~wd~~~~~~~~~--~--~~~~~~v~~~~~~p~~~~l~s~~~d~-------~i~iwd~~~~~-~~~~~-----~ 233 (316)
+..+.+.|..+|+++.. + ..|.-.|..+++.++|..++..-..+ .|-+++....- ....+ .
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~ 214 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRR 214 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHh
Confidence 22466777888988876 4 23777899999999987655544333 23334332211 11111 0
Q ss_pred CcccceeeeecCCCCc-eeEEecCCCeEEEEEecccCcc
Q 021160 234 NAEKIMKANKQGREDH-SRITLTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 234 ~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~w~~~~~~~~ 271 (316)
....+-+++ ...++. ..+|+...+.+.+||..++...
T Consensus 215 l~~Y~gSIa-~~~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 215 LNGYIGSIA-ADRDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred hCCceEEEE-EeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 112222333 455554 4566777899999998887554
No 302
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=1.8e-07 Score=83.11 Aligned_cols=154 Identities=11% Similarity=0.157 Sum_probs=111.0
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS- 109 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s- 109 (316)
..|....+|++|+-.. +.|+.|+..|.|++|++.+|. ..... +.|..+|+-+.-+.+|..+.+
T Consensus 1098 rd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~--------------~e~s~-ncH~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGS--------------MEESV-NCHQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred hccccceeeEEeecCC-ceEEeeeccceEEEEEccCcc--------------ccccc-cccccccccccccCCcceeeee
Confidence 3477889999999987 899999999999999999986 23333 889999999999999974444
Q ss_pred e-c-CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeE
Q 021160 110 Y-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 187 (316)
Q Consensus 110 ~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~ 187 (316)
+ . .-...+|++.... .+.+.|.+ -.++.| +..-++-+.|+......+||++++..+
T Consensus 1162 ss~S~PlsaLW~~~s~~---------------~~~Hsf~e------d~~vkF-sn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1162 SSSSSPLSALWDASSTG---------------GPRHSFDE------DKAVKF-SNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred ccccCchHHHhcccccc---------------Cccccccc------cceeeh-hhhHHHHHhcccccceEEEecccCcHH
Confidence 3 2 3357799986531 34444443 346777 666666677777788999999999877
Q ss_pred EEeec----CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 188 RLMVG----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 188 ~~~~~----~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
.++-. ..-.-+.+.|+|+..+++ .||. +||++...
T Consensus 1220 ~tylt~~~~~~y~~n~a~FsP~D~LIl---ndGv--LWDvR~~~ 1258 (1516)
T KOG1832|consen 1220 QTYLTDTVTSSYSNNLAHFSPCDTLIL---NDGV--LWDVRIPE 1258 (1516)
T ss_pred HHhcCcchhhhhhccccccCCCcceEe---eCce--eeeeccHH
Confidence 66321 112236688999887764 3553 78887654
No 303
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=5.4e-05 Score=64.36 Aligned_cols=197 Identities=8% Similarity=0.063 Sum_probs=120.1
Q ss_pred eEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec-----
Q 021160 37 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----- 111 (316)
Q Consensus 37 v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~----- 111 (316)
=+-+.|+|.| .||++-...| |.+|--.+-... +. -.| ..|.-+.|||..++|++-+
T Consensus 213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~f~r~---------~R-------F~H-p~Vq~idfSP~EkYLVT~s~~p~~ 273 (698)
T KOG2314|consen 213 ETYVRWSPKG-TYLVTFHKQG-IALWGGESFDRI---------QR-------FYH-PGVQFIDFSPNEKYLVTYSPEPII 273 (698)
T ss_pred eeeEEecCCc-eEEEEEeccc-eeeecCccHHHH---------Hh-------ccC-CCceeeecCCccceEEEecCCccc
Confidence 4678999999 8999887654 789976644311 11 122 3478899999999999832
Q ss_pred -C------CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeee-EEEecCCCcEEEEeccCCeEEEEeccC
Q 021160 112 -D------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG-VNFFGPNDEYVMSGSDCGHLFIWKKKG 183 (316)
Q Consensus 112 -d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~~~dg~v~~wd~~~ 183 (316)
+ ..++|||+.+| ...+.|.....+..++. +.| |.|++++|.-.. ..|.||+..+
T Consensus 274 ~~~~d~e~~~l~IWDI~tG----------------~lkrsF~~~~~~~~~WP~frW-S~DdKy~Arm~~-~sisIyEtps 335 (698)
T KOG2314|consen 274 VEEDDNEGQQLIIWDIATG----------------LLKRSFPVIKSPYLKWPIFRW-SHDDKYFARMTG-NSISIYETPS 335 (698)
T ss_pred cCcccCCCceEEEEEcccc----------------chhcceeccCCCccccceEEe-ccCCceeEEecc-ceEEEEecCc
Confidence 1 56999999998 56666665433222333 455 999999987765 5688998776
Q ss_pred CeeEEEeecCccceEEEEEcCCCCeEEEEeC-----CCcEEEecCCCCC-CCCCCCCcccceeeeecCCCCceeEE----
Q 021160 184 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-----EKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRIT---- 253 (316)
Q Consensus 184 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-----d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s---- 253 (316)
-.++..-.-.-..|....|+|.++.||-=.. -..+.+-.+.+++ +++-.-+.-.-..+- |...+.+|..
T Consensus 336 f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLh-WQk~gdyLcvkvdR 414 (698)
T KOG2314|consen 336 FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLH-WQKSGDYLCVKVDR 414 (698)
T ss_pred eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEE-eccCCcEEEEEEEe
Confidence 4433222223467889999999888774331 1245555555544 332222222222333 4444444432
Q ss_pred ------ecCCCeEEEEEecccCcc
Q 021160 254 ------LTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 254 ------~~~d~~~~~w~~~~~~~~ 271 (316)
.+.-..+.++++++++.+
T Consensus 415 ~tK~~~~g~f~n~eIfrireKdIp 438 (698)
T KOG2314|consen 415 HTKSKVKGQFSNLEIFRIREKDIP 438 (698)
T ss_pred eccccccceEeeEEEEEeeccCCC
Confidence 112235667777776554
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.45 E-value=0.00025 Score=56.78 Aligned_cols=172 Identities=14% Similarity=0.130 Sum_probs=102.5
Q ss_pred eEEEEEC-CCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC--
Q 021160 37 LNAIVID-PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND-- 112 (316)
Q Consensus 37 v~~~~~~-~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d-- 112 (316)
...+++. +++ .++.+.. +.+.++|+.+++.. .+.............+.+++.|+|++.++. ..
T Consensus 42 ~~G~~~~~~~g--~l~v~~~-~~~~~~d~~~g~~~----------~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~ 108 (246)
T PF08450_consen 42 PNGMAFDRPDG--RLYVADS-GGIAVVDPDTGKVT----------VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGG 108 (246)
T ss_dssp EEEEEEECTTS--EEEEEET-TCEEEEETTTTEEE----------EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBC
T ss_pred CceEEEEccCC--EEEEEEc-CceEEEecCCCcEE----------EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCc
Confidence 6677887 555 4444444 44566698887632 111111101135678899999999977774 21
Q ss_pred ------CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEE-EeccCCeEEEEeccCC-
Q 021160 113 ------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKKGG- 184 (316)
Q Consensus 113 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~v~~wd~~~~- 184 (316)
+.|+.++.. + +...... .... ...++| +|+++.|+ +-+..+.|..+++...
T Consensus 109 ~~~~~~g~v~~~~~~-~----------------~~~~~~~-~~~~--pNGi~~-s~dg~~lyv~ds~~~~i~~~~~~~~~ 167 (246)
T PF08450_consen 109 ASGIDPGSVYRIDPD-G----------------KVTVVAD-GLGF--PNGIAF-SPDGKTLYVADSFNGRIWRFDLDADG 167 (246)
T ss_dssp TTCGGSEEEEEEETT-S----------------EEEEEEE-EESS--EEEEEE-ETTSSEEEEEETTTTEEEEEEEETTT
T ss_pred cccccccceEEECCC-C----------------eEEEEec-Cccc--ccceEE-CCcchheeecccccceeEEEeccccc
Confidence 557777776 3 2222222 2322 788999 99998765 6677889999998632
Q ss_pred e-e--EEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeee
Q 021160 185 K-L--VRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKAN 242 (316)
Q Consensus 185 ~-~--~~~~---~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 242 (316)
. . ...+ ....+..-.+++..+|++.++....+.|.+++.....+..+.-....+..++
T Consensus 168 ~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 168 GELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCA 231 (246)
T ss_dssp CCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEE
T ss_pred cceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEE
Confidence 2 1 1222 2222347789999999988887778999999998443333322222344444
No 305
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.45 E-value=6e-06 Score=73.92 Aligned_cols=171 Identities=15% Similarity=0.148 Sum_probs=113.1
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 83 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~ 83 (316)
.+..+|+++.+..+..... .+.|.=|+.+ + +++.+|...|+|.+-|.++.+ .
T Consensus 158 ~li~~Dl~~~~e~r~~~v~-----------a~~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~--------------~ 209 (1118)
T KOG1275|consen 158 KLIHIDLNTEKETRTTNVS-----------ASGVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFE--------------T 209 (1118)
T ss_pred heeeeecccceeeeeeecc-----------CCceEEEEec--C-cEEEeecccceEEeecCCcCc--------------e
Confidence 4556677665554444332 2235445443 3 789999999999999999876 3
Q ss_pred cccccCCCcccEEEEEEccCCCeEEEec----------CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCce
Q 021160 84 PRHLIGKNNIHITGLAYSNTSELLISYN----------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153 (316)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (316)
.+.+ ..|.+.|..+.. .|+.|++++ |..|++||++.. +.+..+.-+..
T Consensus 210 iht~-~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm----------------ral~PI~~~~~--- 267 (1118)
T KOG1275|consen 210 IHTF-DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM----------------RALSPIQFPYG--- 267 (1118)
T ss_pred eeee-eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhh----------------hccCCcccccC---
Confidence 3333 889998887654 577777632 566899999876 33322322222
Q ss_pred eeeEEEecCCCcEEEEeccCCeEEEEeccC-Cee---EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 021160 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKL---VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 224 (316)
Q Consensus 154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~-~~~---~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~ 224 (316)
..-+.|++.-...+++++..|...+-|..+ +.+ +..+..-...+..+.+++++..+|.+..+|.|.+|.-.
T Consensus 268 P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 268 PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 233445344466788888899999998332 111 22222334568999999999999999999999999743
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.45 E-value=6.7e-05 Score=69.50 Aligned_cols=212 Identities=11% Similarity=0.152 Sum_probs=126.9
Q ss_pred cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCC
Q 021160 35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDE 113 (316)
Q Consensus 35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~ 113 (316)
..|.++.|..+. +.++.+..+|.|.+-|..+..+. +...-...|.+++|+||++.++. ...+
T Consensus 69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~e----------------ivg~vd~GI~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELE----------------IVGNVDNGISAASWSPDEELLALITGRQ 131 (1265)
T ss_pred cceEEEEEeccc-ceEEEEecCCcEEEEccccccee----------------eeeeccCceEEEeecCCCcEEEEEeCCc
Confidence 579999999887 88888899999999988876421 11333678999999999997766 4556
Q ss_pred cEEEEEcCCCCCCCCccCCccccccC--------CCcceeeCCcC-------------------CceeeeEEEecCCCcE
Q 021160 114 LVYLFEKNMGLGPSPLSLSPEDLQKR--------EEPQVYSGHRN-------------------SQTVKGVNFFGPNDEY 166 (316)
Q Consensus 114 ~i~iwd~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-------------------~~~i~~~~~~~~~~~~ 166 (316)
++.+-+..-.. ..-..+...+.... +.-..|.|... ...-++++| -.||++
T Consensus 132 tll~mT~~f~~-i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW-RgDg~~ 209 (1265)
T KOG1920|consen 132 TLLFMTKDFEP-IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW-RGDGEY 209 (1265)
T ss_pred EEEEEeccccc-hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE-ccCCcE
Confidence 66554431100 00000000000000 00001111000 001245888 889999
Q ss_pred EEE-----eccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe---CCCcEEEecCCCCC----CCCCCCC
Q 021160 167 VMS-----GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTD----FPPLPDN 234 (316)
Q Consensus 167 l~~-----~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~---~d~~i~iwd~~~~~----~~~~~~~ 234 (316)
+++ ....+.+++||.+ |.+-..-..-.+.-.+++|-|.|..+++-. .|+.|.++.-++-. ...++..
T Consensus 210 fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d 288 (1265)
T KOG1920|consen 210 FAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD 288 (1265)
T ss_pred EEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccc
Confidence 988 3334799999987 554433333334446799999999988753 45679999876654 2223333
Q ss_pred cccceeeeecCCCCceeEE---ecCCCeEEEEEecc
Q 021160 235 AEKIMKANKQGREDHSRIT---LTPDVIMHVLRLQR 267 (316)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~s---~~~d~~~~~w~~~~ 267 (316)
..++-.+. |..++..++. ......+++|-+.+
T Consensus 289 e~~ve~L~-Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 289 EKEVEELA-WNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ccchheee-ecCCCCceeeeecccccceEEEEEecC
Confidence 33355555 6666666665 44445699997765
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=3.2e-05 Score=68.48 Aligned_cols=141 Identities=11% Similarity=0.045 Sum_probs=94.1
Q ss_pred CCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccC-----CCeEEEe-cCCcEEEE
Q 021160 45 RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-----SELLISY-NDELVYLF 118 (316)
Q Consensus 45 ~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~s~-~d~~i~iw 118 (316)
.| .++++|+.||+|.|-.+-+.+.. +. ..-..++.+++++|+ .+.+++| .-| +.++
T Consensus 82 ~G-ey~asCS~DGkv~I~sl~~~~~~------------~~----~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~ 143 (846)
T KOG2066|consen 82 EG-EYVASCSDDGKVVIGSLFTDDEI------------TQ----YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLS 143 (846)
T ss_pred CC-ceEEEecCCCcEEEeeccCCccc------------ee----EecCCcceeEEeccchhhhhhhheeecCcce-EEEe
Confidence 36 89999999999999998877521 11 112568899999998 2466665 455 6666
Q ss_pred EcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccc--
Q 021160 119 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV-- 196 (316)
Q Consensus 119 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~-- 196 (316)
.-+-. ........+...+.|.++.| .|.+||-++++| |++||..+.+.+..++.....
T Consensus 144 er~wl----------------gnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R 203 (846)
T KOG2066|consen 144 ERNWL----------------GNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVR 203 (846)
T ss_pred hhhhh----------------cCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCC
Confidence 53321 11122234444456999999 488999998777 899999998888776533222
Q ss_pred ----eEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160 197 ----VNQLEPHPHIPMFATCGIEKTVKLWAPMP 225 (316)
Q Consensus 197 ----v~~~~~~p~~~~l~s~~~d~~i~iwd~~~ 225 (316)
...+.|.++.+ |+.|- .-+|+|..++.
T Consensus 204 ~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~~ 234 (846)
T KOG2066|consen 204 PELFPPHLHWQDEDR-LVIGW-GDSVKICSIKK 234 (846)
T ss_pred cccCCCceEecCCCe-EEEec-CCeEEEEEEec
Confidence 34577776654 44443 44788888873
No 308
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=7.1e-05 Score=66.21 Aligned_cols=219 Identities=11% Similarity=0.082 Sum_probs=137.0
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC-----------CCcEEEEEecCCcEEEEeCcCCcccCC
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR-----------NPNYFAVGGSDEYARVYDIRKCHWYSP 72 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~-----------~~~~l~~g~~dg~v~~wd~~~~~~~~~ 72 (316)
.|-|-|.++-+..+.+.. |+..|+.+.|.|. ..-+||++...|.|.+||...+..
T Consensus 36 lV~VVDs~s~q~iqsie~-----------h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~--- 101 (1062)
T KOG1912|consen 36 LVSVVDSRSLQLIQSIEL-----------HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV--- 101 (1062)
T ss_pred eEEEEehhhhhhhhcccc-----------CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh---
Confidence 355666666555444433 6889999999772 113677788889999999987752
Q ss_pred CCCCCCceecccccccCCCcccEEEEEEccC---CC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeC
Q 021160 73 ISSDTPVDTFCPRHLIGKNNIHITGLAYSNT---SE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG 147 (316)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (316)
...+ ..|..++..+.|-+. .+ +|+. ....++.+|+..+| .....+..
T Consensus 102 -----------~~~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG----------------~k~Wk~~y 153 (1062)
T KOG1912|consen 102 -----------INWL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG----------------EKFWKYDY 153 (1062)
T ss_pred -----------hhhh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC----------------ceeecccc
Confidence 2222 667788888888763 33 4544 57899999999988 34443333
Q ss_pred CcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc-------CCeeEEEeecCcc-------------------------
Q 021160 148 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-------GGKLVRLMVGDRH------------------------- 195 (316)
Q Consensus 148 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~-------~~~~~~~~~~~~~------------------------- 195 (316)
.... ..|+.+-+.+.+.+..-+..|.+.+-+.- .|+..+.-..|.+
T Consensus 154 s~~i--Ls~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fit 231 (1062)
T KOG1912|consen 154 SHEI--LSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFIT 231 (1062)
T ss_pred CCcc--eeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHH
Confidence 3322 56677744466666666667777776642 1333332222221
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCC--CCCCcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160 196 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPP--LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 196 ~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~ 267 (316)
-...++|+|.-+.++-...-..+.++|++-.+ +.. ++....+.++.. -.+....+++.-.+|.+.+|..+.
T Consensus 232 y~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl-P~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 232 YCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL-PDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred HHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec-cCCCcceEEEEecCCeEEEEEeec
Confidence 01236778877666666667899999998765 322 222222222222 122456788999999999997654
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.37 E-value=5.1e-05 Score=60.40 Aligned_cols=208 Identities=13% Similarity=0.097 Sum_probs=113.2
Q ss_pred CCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccc
Q 021160 56 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPED 135 (316)
Q Consensus 56 dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~ 135 (316)
+|.|..||.++++..... .+... .....+.....++.++++..++.|+.||..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~------------~~~~~-~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG------------ 56 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSY------------DLGPG-IGGPVATAVPDGGRVYVASGDGNLYALDAKTG------------ 56 (238)
T ss_dssp TSEEEEEETTTTEEEEEE------------ECSSS-CSSEEETEEEETTEEEEEETTSEEEEEETTTS------------
T ss_pred CCEEEEEECCCCCEEEEE------------ECCCC-CCCccceEEEeCCEEEEEcCCCEEEEEECCCC------------
Confidence 678888998888733211 11001 12222223334445556668999999999888
Q ss_pred cccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe-ecCc---cceEEEEEcCCCCeEEE
Q 021160 136 LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-VGDR---HVVNQLEPHPHIPMFAT 211 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~-~~~~---~~v~~~~~~p~~~~l~s 211 (316)
+.+..+...... ..... ..+..++.++.++.++.+|..+|+.+... .... ...........+..++.
T Consensus 57 ----~~~W~~~~~~~~--~~~~~---~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (238)
T PF13360_consen 57 ----KVLWRFDLPGPI--SGAPV---VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYV 127 (238)
T ss_dssp ----EEEEEEECSSCG--GSGEE---EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEE
T ss_pred ----CEEEEeeccccc--cceee---ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEE
Confidence 555555542211 11111 23556666778889999999999998874 3221 11122233334777788
Q ss_pred EeCCCcEEEecCCCCCC---CCCCCCc--cc------ceeeeecCCCCceeEEecCCCe-EEEEEecccCcceeE-----
Q 021160 212 CGIEKTVKLWAPMPTDF---PPLPDNA--EK------IMKANKQGREDHSRITLTPDVI-MHVLRLQRRQTLAYR----- 274 (316)
Q Consensus 212 ~~~d~~i~iwd~~~~~~---~~~~~~~--~~------~~~~~~~~~~~~~~~s~~~d~~-~~~w~~~~~~~~~~~----- 274 (316)
+..++.|..+|++++++ ..+.... .. ..... ...++ .+...+.++. +.+ |+.+++.. +.
T Consensus 128 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~v~~~~~~g~~~~~-d~~tg~~~-w~~~~~~ 203 (238)
T PF13360_consen 128 GTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSP-VISDG-RVYVSSGDGRVVAV-DLATGEKL-WSKPISG 203 (238)
T ss_dssp EETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEE-ECCTT-EEEEECCTSSEEEE-ETTTTEEE-EEECSS-
T ss_pred EeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccce-EEECC-EEEEEcCCCeEEEE-ECCCCCEE-EEecCCC
Confidence 88799999999998862 1121111 00 00111 11234 5555555654 444 77777533 32
Q ss_pred ---EeecccccccccCCCCeEEEEeccCCC
Q 021160 275 ---ERRYNAADFESDEEEGETYLLGFSDSD 301 (316)
Q Consensus 275 ---~~~~~~~~~~~~~~~~~v~~~~~~~~~ 301 (316)
........+...+.++.++++|...++
T Consensus 204 ~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 204 IYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 123333444444456778888777654
No 310
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.2e-05 Score=66.38 Aligned_cols=208 Identities=13% Similarity=0.063 Sum_probs=137.6
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-e
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 110 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 110 (316)
.|+..|+.+..... .++.+++.||.++.|-...-.- .. ...+. ..|...|.+++.+-++.++.+ +
T Consensus 7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isG----------vE-fVKhF-raHL~~I~sl~~S~dg~L~~Sv~ 72 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISG----------VE-FVKHF-RAHLGVILSLAVSYDGWLFRSVE 72 (558)
T ss_pred cccceeeeEeeehh--heEEeeecchhhhhcCCCCccc----------ee-ehhhh-HHHHHHHHhhhccccceeEeecc
Confidence 47888888776653 6999999999999998653110 01 12222 567888999999999998888 5
Q ss_pred c-CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC-C--cEEEEeccCCeEEEEeccCCe-
Q 021160 111 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-D--EYVMSGSDCGHLFIWKKKGGK- 185 (316)
Q Consensus 111 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~--~~l~~~~~dg~v~~wd~~~~~- 185 (316)
. |..++++|+++- ....-++...-++.+..+ . ++. . ...++.-.++.+.++|-....
T Consensus 73 d~Dhs~KvfDvEn~----------------DminmiKL~~lPg~a~wv-~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~ 134 (558)
T KOG0882|consen 73 DPDHSVKVFDVENF----------------DMINMIKLVDLPGFAEWV-T-SKGDKISLIAVSLFKSGKIFVVDGFGDFC 134 (558)
T ss_pred CcccceeEEEeecc----------------chhhhcccccCCCceEEe-c-CCCCeeeeEEeecccCCCcEEECCcCCcC
Confidence 5 899999999875 121111111111112221 1 221 1 223334568899999976433
Q ss_pred -eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC------CCCC-CCC------C--CcccceeeeecCCCCc
Q 021160 186 -LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP------TDFP-PLP------D--NAEKIMKANKQGREDH 249 (316)
Q Consensus 186 -~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~------~~~~-~~~------~--~~~~~~~~~~~~~~~~ 249 (316)
....-.-|..+|..+.+.|.+..+++....|.|.-|.... ..+. .+. + ..........+++++.
T Consensus 135 q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~ 214 (558)
T KOG0882|consen 135 QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA 214 (558)
T ss_pred ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC
Confidence 2333345899999999999999999999999999999874 1110 111 0 1122334445778888
Q ss_pred eeEEecCCCeEEEEEecccCcc
Q 021160 250 SRITLTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 250 ~~~s~~~d~~~~~w~~~~~~~~ 271 (316)
.+.+...|..|+++++.++...
T Consensus 215 qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 215 QISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cccccCcccEEEEEEeccchhh
Confidence 9999999999999999887544
No 311
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.30 E-value=0.00012 Score=62.93 Aligned_cols=71 Identities=11% Similarity=0.224 Sum_probs=60.0
Q ss_pred eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
+.++++ +|+...++.|+.||.|.+||...+..... ...-.++.++|||+|..+++|+..|.+.+||..-..
T Consensus 262 v~~ca~-sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 262 VICCAR-SPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ceEEec-CcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 889998 99999999999999999999876643322 234567889999999999999999999999987543
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.29 E-value=0.0009 Score=54.00 Aligned_cols=193 Identities=15% Similarity=0.141 Sum_probs=107.1
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEE-----ecCCcEEEEeCcCCcccCCCCCCCC
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG-----GSDEYARVYDIRKCHWYSPISSDTP 78 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g-----~~dg~v~~wd~~~~~~~~~~~~~~~ 78 (316)
...+||.++.+....+...... .+-| .-.|+++| ++|++. ...|.|-|||...+- ..
T Consensus 29 ~~~v~D~~~g~~~~~~~a~~gR---HFyG------Hg~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~~~--------~r 90 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWAPPGR---HFYG------HGVFSPDG-RLLYTTENDYETGRGVIGVYDAARGY--------RR 90 (305)
T ss_pred EEEEEEcCCCceeeEEcCCCCC---EEec------CEEEcCCC-CEEEEeccccCCCcEEEEEEECcCCc--------EE
Confidence 3578999888766555443222 1222 46899999 677665 346889999998321 11
Q ss_pred ceecccccccCCCcccEEEEEEccCCCeEEEecCC--------cEEEEEcCCCCCCCCccCCccccccCCCcceee----
Q 021160 79 VDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE--------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---- 146 (316)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 146 (316)
+..| ..|.-.-..+.+.|+|+.|+.++.| ..++ ++.++. .++..-+..+.+.+....
T Consensus 91 i~E~------~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~----psL~~ld~~sG~ll~q~~Lp~~ 159 (305)
T PF07433_consen 91 IGEF------PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQ----PSLVYLDARSGALLEQVELPPD 159 (305)
T ss_pred EeEe------cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcC----CceEEEecCCCceeeeeecCcc
Confidence 2222 3344445677899999755554322 2221 222221 011111112223443322
Q ss_pred CCcCCceeeeEEEecCCCcEEEEeccCCe-------EEEEeccCCeeEEEee-------cCccceEEEEEcCCCCeEEEE
Q 021160 147 GHRNSQTVKGVNFFGPNDEYVMSGSDCGH-------LFIWKKKGGKLVRLMV-------GDRHVVNQLEPHPHIPMFATC 212 (316)
Q Consensus 147 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-------v~~wd~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~l~s~ 212 (316)
-|... |..+++ .++|..++..-..|. +-+++ .++.+..+. .-.+-+-+|++++++..++..
T Consensus 160 ~~~lS--iRHLa~-~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t 234 (305)
T PF07433_consen 160 LHQLS--IRHLAV-DGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT 234 (305)
T ss_pred ccccc--eeeEEe-cCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEE
Confidence 23333 888888 777765554433332 23333 233233332 123578899999999886554
Q ss_pred e-CCCcEEEecCCCCCCCC
Q 021160 213 G-IEKTVKLWAPMPTDFPP 230 (316)
Q Consensus 213 ~-~d~~i~iwd~~~~~~~~ 230 (316)
+ .-+.+.+||..++.+..
T Consensus 235 sPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 235 SPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred CCCCCEEEEEECCCCCEee
Confidence 4 66789999999988443
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=4.8e-05 Score=67.41 Aligned_cols=182 Identities=12% Similarity=0.164 Sum_probs=116.0
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 112 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 112 (316)
...++|++++- ..|+-|+.+|.|++++....- ... ..|... ..+|++++++ .|
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~----------------~~~-~~~s~~------~~~Gey~asCS~D 92 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQGNP----------------KTN-FDHSSS------ILEGEYVASCSDD 92 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCCcc----------------ccc-cccccc------ccCCceEEEecCC
Confidence 45677777774 689999999999999987331 111 122222 5678899996 69
Q ss_pred CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC-----CcEEEEeccCCeEEEEecc---CC
Q 021160 113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-----DEYVMSGSDCGHLFIWKKK---GG 184 (316)
Q Consensus 113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~l~~~~~dg~v~~wd~~---~~ 184 (316)
|+|.|-.+-+. +....+.-+ .++.++++ +|+ .+.+++|+..| +.++.-+ ..
T Consensus 93 Gkv~I~sl~~~----------------~~~~~~df~---rpiksial-~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk 151 (846)
T KOG2066|consen 93 GKVVIGSLFTD----------------DEITQYDFK---RPIKSIAL-HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK 151 (846)
T ss_pred CcEEEeeccCC----------------ccceeEecC---CcceeEEe-ccchhhhhhhheeecCcce-EEEehhhhhcCc
Confidence 99999988776 344434322 33889998 776 56788999888 7777632 22
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceee-----eecCCCCceeEEecCCC
Q 021160 185 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKA-----NKQGREDHSRITLTPDV 258 (316)
Q Consensus 185 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~d~ 258 (316)
..+ .+....++|.++.|. |.++|-++.+| |++||+..++ +..++.....+... ..|. +...++-|-. .
T Consensus 152 ~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~-~~~~LVIGW~-d 225 (846)
T KOG2066|consen 152 DSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ-DEDRLVIGWG-D 225 (846)
T ss_pred cce-eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec-CCCeEEEecC-C
Confidence 222 344566899999994 77899988665 7999998877 33333222222111 1122 2334444443 4
Q ss_pred eEEEEEeccc
Q 021160 259 IMHVLRLQRR 268 (316)
Q Consensus 259 ~~~~w~~~~~ 268 (316)
+|++..++.+
T Consensus 226 ~v~i~~I~~~ 235 (846)
T KOG2066|consen 226 SVKICSIKKR 235 (846)
T ss_pred eEEEEEEecc
Confidence 5677777633
No 314
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.29 E-value=0.00022 Score=66.27 Aligned_cols=172 Identities=11% Similarity=0.117 Sum_probs=100.9
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCC-------CCCc--eecccccccCC--------------
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS-------DTPV--DTFCPRHLIGK-------------- 90 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~-------~~~~--~~~~~~~~~~~-------------- 90 (316)
..+|.+++|+|++ ..++..+..+++.+-+-. -..+.+-.. ...+ ..-...+-..+
T Consensus 109 d~GI~aaswS~De-e~l~liT~~~tll~mT~~-f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e 186 (1265)
T KOG1920|consen 109 DNGISAASWSPDE-ELLALITGRQTLLFMTKD-FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE 186 (1265)
T ss_pred cCceEEEeecCCC-cEEEEEeCCcEEEEEecc-ccchhccccccccccccccceecccccceeeecchhhhccccccccc
Confidence 4579999999999 788888887777665431 111100000 0000 00000000000
Q ss_pred -------CcccEEEEEEccCCCeEEEe-----cC-CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160 91 -------NNIHITGLAYSNTSELLISY-----ND-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 157 (316)
Q Consensus 91 -------~~~~i~~~~~~~~~~~l~s~-----~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 157 (316)
-.+.=+.+.|--||++++.+ .+ ..|++||-+ + .+........ ..-.++
T Consensus 187 k~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-----------------~Lns~se~~~-~l~~~L 247 (1265)
T KOG1920|consen 187 KALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-----------------ALNSTSEPVE-GLQHSL 247 (1265)
T ss_pred ccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-----------------hhhcccCccc-ccccce
Confidence 11123468999999977762 25 789999987 3 1222211111 124678
Q ss_pred EEecCCCcEEEEec---cCCeEEEEecc---CCeeEEEeecCccceEEEEEcCCCCeEEE---EeCCCcEEEecCCCCC
Q 021160 158 NFFGPNDEYVMSGS---DCGHLFIWKKK---GGKLVRLMVGDRHVVNQLEPHPHIPMFAT---CGIEKTVKLWAPMPTD 227 (316)
Q Consensus 158 ~~~~~~~~~l~~~~---~dg~v~~wd~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~s---~~~d~~i~iwd~~~~~ 227 (316)
+| -|.|..+++-- .++.|.+|.-+ .|+....++.....+..++|+.++..||. ......|++|-+.+..
T Consensus 248 sW-kPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 248 SW-KPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ee-cCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 88 88999988753 46678888854 23333333334445899999999999876 4444459999987654
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=9.8e-06 Score=66.95 Aligned_cols=187 Identities=12% Similarity=0.111 Sum_probs=121.4
Q ss_pred CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEec-CCcEEEEeCcCCcccCCCCCCCCc
Q 021160 1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPV 79 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~-dg~v~~wd~~~~~~~~~~~~~~~~ 79 (316)
|+|+++.|--....-... .... ..|-+.|.+++.+-++ .++.+.+. |..++++|+++-...+.+....
T Consensus 28 lDGh~KFWkKs~isGvEf--VKhF------raHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-- 96 (558)
T KOG0882|consen 28 LDGHKKFWKKSRISGVEF--VKHF------RAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVD-- 96 (558)
T ss_pred cchhhhhcCCCCccceee--hhhh------HHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhccccc--
Confidence 567777776433221111 1111 1377889999999998 78888777 9999999998766433221111
Q ss_pred eecccccccCCCcccEEEEEEccCCC--eEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee
Q 021160 80 DTFCPRHLIGKNNIHITGLAYSNTSE--LLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK 155 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 155 (316)
+ .+.+..+ .++... .++.+ .++.+.++|-..... +....-.-|.++ |.
T Consensus 97 -------l----Pg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~--------------q~~~fkklH~sP--V~ 148 (558)
T KOG0882|consen 97 -------L----PGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFC--------------QDGYFKKLHFSP--VK 148 (558)
T ss_pred -------C----CCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcC--------------ccceecccccCc--eE
Confidence 1 1112121 222211 33333 589999999765421 122233446655 99
Q ss_pred eEEEecCCCcEEEEeccCCeEEEEeccC------CeeEEE---------eecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021160 156 GVNFFGPNDEYVMSGSDCGHLFIWKKKG------GKLVRL---------MVGDRHVVNQLEPHPHIPMFATCGIEKTVKL 220 (316)
Q Consensus 156 ~~~~~~~~~~~l~~~~~dg~v~~wd~~~------~~~~~~---------~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~i 220 (316)
.+.+ .+.+..+++....|.|.-|.... .+.... +.-......++.|+|++..+.+-+.|..|++
T Consensus 149 ~i~y-~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~ 227 (558)
T KOG0882|consen 149 KIRY-NQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG 227 (558)
T ss_pred EEEe-eccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence 9988 89999999999999999999772 111111 1122356789999999999999999999999
Q ss_pred ecCCCCC
Q 021160 221 WAPMPTD 227 (316)
Q Consensus 221 wd~~~~~ 227 (316)
+.+.+++
T Consensus 228 F~~KtGk 234 (558)
T KOG0882|consen 228 FVFKTGK 234 (558)
T ss_pred EEeccch
Confidence 9998875
No 316
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=0.00012 Score=64.96 Aligned_cols=156 Identities=14% Similarity=0.191 Sum_probs=109.4
Q ss_pred CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC--------
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-------- 104 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------- 104 (316)
|...-.++.|+|.| +||-|+. ..|.+-|..+.+.++ .+ ..|...|+.+.|.|..
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iq--------------si-e~h~s~V~~VrWap~~~p~~llS~ 75 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQ--------------SI-ELHQSAVTSVRWAPAPSPRDLLSP 75 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhh--------------cc-ccCccceeEEEeccCCCchhccCc
Confidence 34456789999988 6666654 678889988776332 22 6678889999998732
Q ss_pred ---C-eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe--cCCC-cEEEEeccCCeE
Q 021160 105 ---E-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF--GPND-EYVMSGSDCGHL 176 (316)
Q Consensus 105 ---~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~-~~l~~~~~dg~v 176 (316)
. +++++ -.|.|.+||.... .....+..+... +.+++|. -++. .+|++.....++
T Consensus 76 ~~~~lliAsaD~~GrIil~d~~~~----------------s~~~~l~~~~~~--~qdl~W~~~rd~Srd~LlaIh~ss~l 137 (1062)
T KOG1912|consen 76 SSSQLLIASADISGRIILVDFVLA----------------SVINWLSHSNDS--VQDLCWVPARDDSRDVLLAIHGSSTL 137 (1062)
T ss_pred cccceeEEeccccCcEEEEEehhh----------------hhhhhhcCCCcc--hhheeeeeccCcchheeEEecCCcEE
Confidence 2 44555 3899999999887 455556666654 8888883 2233 567777788899
Q ss_pred EEEeccCCeeEEEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEecCC
Q 021160 177 FIWKKKGGKLVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPM 224 (316)
Q Consensus 177 ~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~s~~~d~~i~iwd~~ 224 (316)
.+|+..+|+.............++.+.|-. +.+..-+..|.+.+-+.-
T Consensus 138 vLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 138 VLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred EEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 999999999887766544566778888843 445555556777766643
No 317
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.21 E-value=8.9e-05 Score=63.73 Aligned_cols=116 Identities=11% Similarity=0.096 Sum_probs=75.7
Q ss_pred ceEEEEECCCCCcEEEEE----ecCCcE----EEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeE
Q 021160 36 RLNAIVIDPRNPNYFAVG----GSDEYA----RVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 107 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g----~~dg~v----~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 107 (316)
...++.|+...++.+.+- +.+|.+ .+|++...++ + +.....-.....+.+.+++|+...+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl----------q--rvsvtsipL~s~v~~ca~sp~E~kL 274 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL----------Q--RVSVTSIPLPSQVICCARSPSEDKL 274 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce----------e--EEEEEEEecCCcceEEecCcccceE
Confidence 345777877665666664 234443 3355543331 1 1111112346789999999998755
Q ss_pred EE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC
Q 021160 108 IS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 184 (316)
Q Consensus 108 ~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~ 184 (316)
+. +.||.|.+||...+ ... +....- ..+.++| +|+|..+++|+..|.+.+||+.-+
T Consensus 275 vlGC~DgSiiLyD~~~~-----------------~t~-~~ka~~--~P~~iaW-Hp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 275 VLGCEDGSIILYDTTRG-----------------VTL-LAKAEF--IPTLIAW-HPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEecCCeEEEEEcCCC-----------------eee-eeeecc--cceEEEE-cCCCcEEEEEcCCceEEEEEeecC
Confidence 54 68999999998765 222 222222 2688998 999999999999999999997643
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.17 E-value=4.1e-05 Score=68.81 Aligned_cols=179 Identities=11% Similarity=0.089 Sum_probs=123.1
Q ss_pred CCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCC
Q 021160 46 NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGL 124 (316)
Q Consensus 46 ~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~ 124 (316)
++..++.|+....+..+|+++.+... .. .-....|.-+.. +++++.+| ..|+|.+-|.++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r--------------~~-~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~- 207 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETR--------------TT-NVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF- 207 (1118)
T ss_pred CCcceeecchhhheeeeecccceeee--------------ee-eccCCceEEEEe--cCcEEEeecccceEEeecCCcC-
Confidence 33567777777778888888775221 11 111223444433 45677776 6999999999887
Q ss_pred CCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc---------CCeEEEEeccCCeeEEEeecCcc
Q 021160 125 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---------CGHLFIWKKKGGKLVRLMVGDRH 195 (316)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------dg~v~~wd~~~~~~~~~~~~~~~ 195 (316)
+..+++..|.+. +.++. -.|+.|++++. |..|++||++.-+.+..+.-+.+
T Consensus 208 ---------------~~iht~~aHs~s--iSDfD---v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~ 267 (1118)
T KOG1275|consen 208 ---------------ETIHTFDAHSGS--ISDFD---VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG 267 (1118)
T ss_pred ---------------ceeeeeeccccc--eeeee---ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC
Confidence 789999999976 87765 46888888875 55689999998777766665554
Q ss_pred ceEEEEEcCCCCe-EEEEeCCCcEEEecCCC---CC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEE
Q 021160 196 VVNQLEPHPHIPM-FATCGIEKTVKLWAPMP---TD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 264 (316)
Q Consensus 196 ~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~ 264 (316)
+ .-+.|+|.-.. ++.++..|...+-|..+ .. ...+......+.... .++.+..++-+..+|.|.+|.
T Consensus 268 P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fD-iSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 268 P-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFD-ISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred c-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEE-ecCCCceEEEecccCcEeeec
Confidence 4 55788996543 77888889999888433 22 111222223344444 777888999999999999998
No 319
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.16 E-value=0.00047 Score=60.54 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=81.9
Q ss_pred CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 111 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 111 (316)
|...|.--+++..+ .+++.|++-|.+.+|+-..++... ....+-.+.+.....+++..++|.+ .
T Consensus 32 ~~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~~--------------~~~~~~~~~~~~~~vs~~e~lvAagt~ 96 (726)
T KOG3621|consen 32 FPARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMRK--------------LKNEGATGITCVRSVSSVEYLVAAGTA 96 (726)
T ss_pred CcceEEEEEeecCC-ceEEEecccceEEEEecCchhhhc--------------ccccCccceEEEEEecchhHhhhhhcC
Confidence 34455555666666 899999999999999988776321 1112234445566677777777665 6
Q ss_pred CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC
Q 021160 112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG 183 (316)
Q Consensus 112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~ 183 (316)
.|.|.++-++....+....+... -..|. ..|++++| ++++..+++|...|.|.+-.+.+
T Consensus 97 ~g~V~v~ql~~~~p~~~~~~t~~----------d~~~~--~rVTal~W-s~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 97 SGRVSVFQLNKELPRDLDYVTPC----------DKSHK--CRVTALEW-SKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CceEEeehhhccCCCcceeeccc----------cccCC--ceEEEEEe-cccccEEeecCCCceEEEEEech
Confidence 88898888876521111110000 01134 34999999 99999999999999998877665
No 320
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.12 E-value=0.0013 Score=55.70 Aligned_cols=201 Identities=10% Similarity=-0.008 Sum_probs=119.4
Q ss_pred cceEEEEECCCCCcEEEEEecCC---------------cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEE-EE
Q 021160 35 IRLNAIVIDPRNPNYFAVGGSDE---------------YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHIT-GL 98 (316)
Q Consensus 35 ~~v~~~~~~~~~~~~l~~g~~dg---------------~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~ 98 (316)
..|..+.|+|.+ +||.+=+... .+.+||+.++.++.. +.. .......+ -+
T Consensus 72 ~~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~s---------f~~----~~q~~~~Wp~~ 137 (561)
T COG5354 72 PDVKYLDFSPNE-KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFS---------FNG----ISQPYLGWPVL 137 (561)
T ss_pred CCceecccCccc-ceeeeeccCCccChhhccCCccccCceeEEeccCceeEee---------ccc----cCCccccccee
Confidence 358899999998 8988854433 489999998874322 110 00011123 56
Q ss_pred EEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC--cEEEE-----ec
Q 021160 99 AYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND--EYVMS-----GS 171 (316)
Q Consensus 99 ~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~-----~~ 171 (316)
.|+.+.++++--....++++++..... . .+.+.++ .. .+....| +|.+ ..|+. ..
T Consensus 138 k~s~~D~y~ARvv~~sl~i~e~t~n~~------------~-~p~~~lr--~~--gi~dFsi-sP~~n~~~la~~tPEk~~ 199 (561)
T COG5354 138 KFSIDDKYVARVVGSSLYIHEITDNIE------------E-HPFKNLR--PV--GILDFSI-SPEGNHDELAYWTPEKLN 199 (561)
T ss_pred eeeecchhhhhhccCeEEEEecCCccc------------c-Cchhhcc--cc--ceeeEEe-cCCCCCceEEEEccccCC
Confidence 788877765554566789999732200 0 0111222 12 2777777 6653 22332 35
Q ss_pred cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe-----------CCCcEEEecCCCCCCCCCCCCccccee
Q 021160 172 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-----------IEKTVKLWAPMPTDFPPLPDNAEKIMK 240 (316)
Q Consensus 172 ~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~ 240 (316)
..+.+++|.+..++.+.+-.-....-..+.|++.|++|+.-- ....++|++++...+....+..++|..
T Consensus 200 kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhd 279 (561)
T COG5354 200 KPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHD 279 (561)
T ss_pred CCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecccccccee
Confidence 577899999886665544332233334688999998854221 124578888886655544455677888
Q ss_pred eeecCCCCcee--EEecCCCeEEEEEeccc
Q 021160 241 ANKQGREDHSR--ITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 241 ~~~~~~~~~~~--~s~~~d~~~~~w~~~~~ 268 (316)
.. |.+.++.+ ++|-....+.+++++..
T Consensus 280 f~-W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 280 FT-WEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred ee-ecccCCceeEEecccccceeecccccc
Confidence 87 55544433 44457788888887654
No 321
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.07 E-value=0.00069 Score=57.27 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=104.0
Q ss_pred CcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEe
Q 021160 91 NNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 170 (316)
Q Consensus 91 ~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 170 (316)
-.-++..+.|||.|.+|++..-..|.+|.-... ..+..+. |.+ |..+.| +|.+.+|.+=
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~----------------~~l~~~~-~~~---V~~~~f-SP~~kYL~tw 89 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSK----------------AKLVRFR-HPD---VKYLDF-SPNEKYLVTW 89 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccch----------------hheeeee-cCC---ceeccc-Ccccceeeee
Confidence 456788899999999999987778999997765 3444444 322 888998 9999999986
Q ss_pred ccCC---------------eEEEEeccCCeeEEEeecCccc--eE-EEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCC
Q 021160 171 SDCG---------------HLFIWKKKGGKLVRLMVGDRHV--VN-QLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP 232 (316)
Q Consensus 171 ~~dg---------------~v~~wd~~~~~~~~~~~~~~~~--v~-~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 232 (316)
+..+ .+.+||..+|..+..+.....+ .+ -+.|+-+.+++|=.. ...++|+++ +..+...+
T Consensus 90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p 167 (561)
T COG5354 90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHP 167 (561)
T ss_pred ccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCc
Confidence 6544 4999999999999988765544 44 678998888865442 357999997 33322221
Q ss_pred CC---cccceeeeecCCC--CceeEE-----ecCCCeEEEEEeccc
Q 021160 233 DN---AEKIMKANKQGRE--DHSRIT-----LTPDVIMHVLRLQRR 268 (316)
Q Consensus 233 ~~---~~~~~~~~~~~~~--~~~~~s-----~~~d~~~~~w~~~~~ 268 (316)
-+ ...+.... ++++ ...++. ....+++++|.+...
T Consensus 168 ~~~lr~~gi~dFs-isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~ 212 (561)
T COG5354 168 FKNLRPVGILDFS-ISPEGNHDELAYWTPEKLNKPAMVRILSIPKN 212 (561)
T ss_pred hhhccccceeeEE-ecCCCCCceEEEEccccCCCCcEEEEEEccCC
Confidence 11 12333343 3442 223343 334578888887654
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.05 E-value=0.003 Score=54.48 Aligned_cols=188 Identities=11% Similarity=0.003 Sum_probs=102.6
Q ss_pred cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCC
Q 021160 48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 127 (316)
Q Consensus 48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~ 127 (316)
..++.+..++.+..+|..+++.........+... . .+...++ .. ++.+++...++.+..+|..++
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~-----~-~~~~sP~----v~-~~~v~~~~~~g~v~a~d~~~G---- 225 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT-----L-RGESAPA----TA-FGGAIVGGDNGRVSAVLMEQG---- 225 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeecCCCCccc-----c-cCCCCCE----EE-CCEEEEEcCCCEEEEEEccCC----
Confidence 3566778889999999999985433211110000 0 0111111 11 244555567888888888877
Q ss_pred CccCCccccccCCCcceeeCCc--CCc---eeeeEEEecC--CCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEE
Q 021160 128 PLSLSPEDLQKREEPQVYSGHR--NSQ---TVKGVNFFGP--NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQL 200 (316)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~--~~~---~i~~~~~~~~--~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~ 200 (316)
+......... ... ....+.. +| .+..++.++.+|.+..+|..+|+.+-.... .....+
T Consensus 226 ------------~~~W~~~~~~~~~~~~~~~~~~~~~-sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~ 290 (394)
T PRK11138 226 ------------QLIWQQRISQPTGATEIDRLVDVDT-TPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDF 290 (394)
T ss_pred ------------hhhheeccccCCCccchhcccccCC-CcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCc
Confidence 2222221100 000 0001111 12 245677777899999999999987655432 111122
Q ss_pred EEcCCCCeEEEEeCCCcEEEecCCCCCC-CCCCCCcccceeeeecCC--CCceeEEecCCCeEEEEEecccCcc
Q 021160 201 EPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR--EDHSRITLTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 201 ~~~p~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~s~~~d~~~~~w~~~~~~~~ 271 (316)
.. .+..+..++.++.+..+|..+++. -.......... .++ .+..++.++.+|.+..+|..+++..
T Consensus 291 ~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~----~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 291 AV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLL----TAPVLYNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred EE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcc----cCCEEECCEEEEEeCCCEEEEEECCCCCEE
Confidence 22 345666777899999999988762 11111011110 111 2456777888999999998887543
No 323
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.04 E-value=2.3e-05 Score=41.97 Aligned_cols=39 Identities=26% Similarity=0.476 Sum_probs=34.4
Q ss_pred CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEec
Q 021160 184 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 222 (316)
Q Consensus 184 ~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd 222 (316)
++++..+..|...|.+++|+|.+..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455667778889999999999999999999999999996
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0015 Score=58.78 Aligned_cols=197 Identities=10% Similarity=0.082 Sum_probs=110.7
Q ss_pred EECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC-CeEEE-ecC-C----
Q 021160 41 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YND-E---- 113 (316)
Q Consensus 41 ~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d-~---- 113 (316)
+|++.+ ..++.|+.+|.|.+.+-.-.- +..| .++...+...-+.-++ .+|++ +.| +
T Consensus 30 c~~s~~-~~vvigt~~G~V~~Ln~s~~~----------~~~f------qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~ 92 (933)
T KOG2114|consen 30 CCSSST-GSVVIGTADGRVVILNSSFQL----------IRGF------QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPV 92 (933)
T ss_pred EEcCCC-ceEEEeeccccEEEeccccee----------eehh------eecchhhhhHhhcccCceEEEEEeecCCCCce
Confidence 356656 799999999999888754211 0111 3444443333344444 57777 543 3
Q ss_pred cEEEEEcCCCCCCCCccCCccccccCCCc--ceeeC---CcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc----CC
Q 021160 114 LVYLFEKNMGLGPSPLSLSPEDLQKREEP--QVYSG---HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK----GG 184 (316)
Q Consensus 114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~----~~ 184 (316)
.+++|+++......+. ..+ ..+.+ ..++.++.+++. +.+-+.+++|-.+|.|..+.-. .|
T Consensus 93 llkiw~lek~~~n~sP----------~c~~~~ri~~~~np~~~~p~s~l~V-s~~l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSP----------QCLYEHRIFTIKNPTNPSPASSLAV-SEDLKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred EEEEecccccCCCCCc----------ceeeeeeeeccCCCCCCCcceEEEE-EccccEEEEEecCcEEEEEcCcchhccc
Confidence 5899999875322110 111 11122 222334778887 7888999999999999988622 12
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEE
Q 021160 185 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV 262 (316)
Q Consensus 185 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~ 262 (316)
....-......+|+.+++..+++.++-+..-..|.+|.+.+.. ...+..+...+ .+..+......++.++ +..+.+
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~l-nCss~~~~t~qfIca~-~e~l~f 239 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISL-NCSSFSDGTYQFICAG-SEFLYF 239 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccc-eeeecCCCCccEEEec-CceEEE
Confidence 2122222235799999999888873333445689999998655 22233333332 2222222222244433 344566
Q ss_pred EEecc
Q 021160 263 LRLQR 267 (316)
Q Consensus 263 w~~~~ 267 (316)
++...
T Consensus 240 Y~sd~ 244 (933)
T KOG2114|consen 240 YDSDG 244 (933)
T ss_pred EcCCC
Confidence 66543
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=0.00022 Score=63.99 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=60.9
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 112 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 112 (316)
+-.+++++|+|.. -.|+.|-.-|.+.+|...+.+ ..++...|+.+|..+.|+++|..++++ .-
T Consensus 59 P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e---------------~htv~~th~a~i~~l~wS~~G~~l~t~d~~ 122 (1416)
T KOG3617|consen 59 PVHATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTE---------------THTVVETHPAPIQGLDWSHDGTVLMTLDNP 122 (1416)
T ss_pred ceehhhhccChHH-HHHhhccccceeEEEecCCce---------------eeeeccCCCCCceeEEecCCCCeEEEcCCC
Confidence 4456789999987 788889899999999988664 344447789999999999999999997 68
Q ss_pred CcEEEEEcCC
Q 021160 113 ELVYLFEKNM 122 (316)
Q Consensus 113 ~~i~iwd~~~ 122 (316)
|.+.+|....
T Consensus 123 g~v~lwr~d~ 132 (1416)
T KOG3617|consen 123 GSVHLWRYDV 132 (1416)
T ss_pred ceeEEEEeee
Confidence 9999998873
No 326
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.98 E-value=0.0018 Score=55.75 Aligned_cols=213 Identities=7% Similarity=-0.026 Sum_probs=116.1
Q ss_pred cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCC
Q 021160 48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 127 (316)
Q Consensus 48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~ 127 (316)
..++.++.++.+..+|.++++........ ..+.+--.-.++.+++...++.++-+|..++
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~----------------~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG---- 180 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVA----------------GEALSRPVVSDGLVLVHTSNGMLQALNESDG---- 180 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCC----------------CceecCCEEECCEEEEECCCCEEEEEEccCC----
Confidence 45677788999999999999844321111 1111100111445566667889999999888
Q ss_pred CccCCccccccCCCcceeeCCcCCce---eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCcc-------ce
Q 021160 128 PLSLSPEDLQKREEPQVYSGHRNSQT---VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-------VV 197 (316)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~-------~v 197 (316)
+.+-.+........ ..+-.. .+..++.++.+|.+..+|..+|+.+........ ..
T Consensus 181 ------------~~~W~~~~~~~~~~~~~~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 181 ------------AVKWTVNLDVPSLTLRGESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred ------------CEeeeecCCCCcccccCCCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence 44433332110000 001111 134567778899999999999887654431100 01
Q ss_pred EEEEEcC--CCCeEEEEeCCCcEEEecCCCCCCC-CCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeE
Q 021160 198 NQLEPHP--HIPMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR 274 (316)
Q Consensus 198 ~~~~~~p--~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~ 274 (316)
..+.-+| .+..+..++.++.+..+|+.+++.. ... ... ... ....+..+..++.++.+..+|..+++. .+.
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~~~-~~~---~~~~~~~vy~~~~~g~l~ald~~tG~~-~W~ 319 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-YGS-VND---FAVDGGRIYLVDQNDRVYALDTRGGVE-LWS 319 (394)
T ss_pred cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-CCC-ccC---cEEECCEEEEEcCCCeEEEEECCCCcE-EEc
Confidence 1111222 2445666677899999999887621 111 000 000 111344566677788888888776632 221
Q ss_pred -E-------eec--ccccccccCCCCeEEEEeccCCC
Q 021160 275 -E-------RRY--NAADFESDEEEGETYLLGFSDSD 301 (316)
Q Consensus 275 -~-------~~~--~~~~~~~~~~~~~v~~~~~~~~~ 301 (316)
. ..| ....+...+.+|.++++|..+++
T Consensus 320 ~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 320 QSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred ccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCC
Confidence 0 011 22344445677888888887765
No 327
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.92 E-value=0.0021 Score=53.75 Aligned_cols=186 Identities=10% Similarity=0.071 Sum_probs=111.2
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCC---CCcEEEEEec----------CCcEEEEeCcCCcc
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR---NPNYFAVGGS----------DEYARVYDIRKCHW 69 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~---~~~~l~~g~~----------dg~v~~wd~~~~~~ 69 (316)
+.|++.|..+.+....+.....+ +-..+..+.+..+ ...+|++|+. .|.|.++++.....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E-------~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~ 74 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNE-------HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE 74 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTE-------EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--
T ss_pred cEEEEEeCCCCeEEEEEECCCCc-------eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc
Confidence 57899998888766666665444 2233344445432 1368888753 28899999987410
Q ss_pred cCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc
Q 021160 70 YSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149 (316)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (316)
....++.... ....++|++++-. .+ .|+.+.++.|++|++... +.+.....+.
T Consensus 75 -----~~~~l~~i~~----~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~----------------~~l~~~~~~~ 127 (321)
T PF03178_consen 75 -----NNFKLKLIHS----TEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNS----------------KTLLKKAFYD 127 (321)
T ss_dssp --------EEEEEEE----EEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETT----------------SSEEEEEEE-
T ss_pred -----cceEEEEEEE----EeecCcceEhhhh-CC-EEEEeecCEEEEEEccCc----------------ccchhhheec
Confidence 0001111111 2236778888766 33 477777899999999876 3122222222
Q ss_pred CCceeeeEEEecCCCcEEEEeccCCeEEEEeccC-CeeEEEee--cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMV--GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 225 (316)
Q Consensus 150 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~--~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~ 225 (316)
....+.++.. .+++++.|.....+.++..+. ++.+..+. .....++++.+-+++..++.+..+|.+.++....
T Consensus 128 ~~~~i~sl~~---~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 128 SPFYITSLSV---FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp BSSSEEEEEE---ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred ceEEEEEEec---cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 2223677765 366999999888888886553 33233332 2345688888886767899999999999988753
No 328
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.90 E-value=0.0019 Score=57.15 Aligned_cols=105 Identities=10% Similarity=0.041 Sum_probs=72.6
Q ss_pred EccCCCeEEEecCCcEEEEEcCC----CCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc-CC
Q 021160 100 YSNTSELLISYNDELVYLFEKNM----GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG 174 (316)
Q Consensus 100 ~~~~~~~l~s~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg 174 (316)
+.++|++... .++.|.+.|..+ +. +.+..+.... ....+++ +|||+++++++. +.
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~---------------~v~~yIPVGK---sPHGV~v-SPDGkylyVanklS~ 343 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGS---------------ALTRYVPVPK---NPHGVNT-SPDGKYFIANGKLSP 343 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCc---------------ceEEEEECCC---CccceEE-CCCCCEEEEeCCCCC
Confidence 3446664433 467899999876 20 2334343322 2788998 999999877664 89
Q ss_pred eEEEEeccCCee------------EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160 175 HLFIWKKKGGKL------------VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 225 (316)
Q Consensus 175 ~v~~wd~~~~~~------------~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~ 225 (316)
+|.+.|+.+.+. ......- ......+|.++|+...|-..|..|..|++..
T Consensus 344 tVSVIDv~k~k~~~~~~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cEEEEEChhhhhhhhccCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 999999887442 3333322 2345678999998888888999999999865
No 329
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.00038 Score=59.82 Aligned_cols=161 Identities=13% Similarity=0.145 Sum_probs=94.9
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEE--eCcCCcccCCCCCCCCcee
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVY--DIRKCHWYSPISSDTPVDT 81 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~w--d~~~~~~~~~~~~~~~~~~ 81 (316)
.+.++|+.+.+...+... .+.-..-+|+|+|.+++++...||...|| |+..+..
T Consensus 219 ~i~~~~l~~g~~~~i~~~------------~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~------------ 274 (425)
T COG0823 219 RIYYLDLNTGKRPVILNF------------NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL------------ 274 (425)
T ss_pred eEEEEeccCCccceeecc------------CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc------------
Confidence 477788887776666553 22345678999997777777788876655 5544431
Q ss_pred cccccccCCCcccEEEEEEccCCCeEEEe--cCC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeE
Q 021160 82 FCPRHLIGKNNIHITGLAYSNTSELLISY--NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 157 (316)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 157 (316)
.. + ....+.-..-.|+|+|+.++-. ..| .|.+++.+.. ....+...... -..-
T Consensus 275 --~~-L-t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-----------------~~~riT~~~~~--~~~p 331 (425)
T COG0823 275 --PR-L-TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-----------------QVTRLTFSGGG--NSNP 331 (425)
T ss_pred --ee-c-ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC-----------------ceeEeeccCCC--CcCc
Confidence 11 1 1112222366899999966553 344 3677777665 22333322221 1134
Q ss_pred EEecCCCcEEEEeccC-Ce--EEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe
Q 021160 158 NFFGPNDEYVMSGSDC-GH--LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 213 (316)
Q Consensus 158 ~~~~~~~~~l~~~~~d-g~--v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~ 213 (316)
.+ +|+|++|+..+.. |. |.+.|+.++.-.+.+. .........|.|++..+...+
T Consensus 332 ~~-SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 332 VW-SPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred cC-CCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 45 9999999887743 33 6666666655444333 334445567888888766554
No 330
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.002 Score=55.54 Aligned_cols=156 Identities=10% Similarity=0.016 Sum_probs=92.4
Q ss_pred cceEEEEECCCCCcEEEEEecC---CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-
Q 021160 35 IRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 110 (316)
Q Consensus 35 ~~v~~~~~~~~~~~~l~~g~~d---g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 110 (316)
..+..-+|+|++..+....-.. ..+.++++.+++.. .+-+ -...-...+|+|+|+.|+-+
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-------~i~~---------~~g~~~~P~fspDG~~l~f~~ 256 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-------VILN---------FNGNNGAPAFSPDGSKLAFSS 256 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-------eeec---------cCCccCCccCCCCCCEEEEEE
Confidence 4567788999985444333222 34889999988621 1111 12233467899999855543
Q ss_pred -cCCc--EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC-C--eEEEEeccCC
Q 021160 111 -NDEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-G--HLFIWKKKGG 184 (316)
Q Consensus 111 -~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g--~v~~wd~~~~ 184 (316)
.|+. |+++|+..+ . ...+...... -..=.| +|+|++|+-.++. | .|.+++++.+
T Consensus 257 ~rdg~~~iy~~dl~~~----------------~-~~~Lt~~~gi--~~~Ps~-spdG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 257 SRDGSPDIYLMDLDGK----------------N-LPRLTNGFGI--NTSPSW-SPDGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CCCCCccEEEEcCCCC----------------c-ceecccCCcc--ccCccC-CCCCCEEEEEeCCCCCcceEEECCCCC
Confidence 4554 777787776 2 2223322221 123345 9999999887653 3 4777777766
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEeC-CCc--EEEecCCCCC
Q 021160 185 KLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EKT--VKLWAPMPTD 227 (316)
Q Consensus 185 ~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~~--i~iwd~~~~~ 227 (316)
.. ..+......-..-.|+|+|++|+..+. +|. |.+.++.++.
T Consensus 317 ~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 317 QV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred ce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 54 344333333336789999999876663 344 6666665544
No 331
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.85 E-value=0.0064 Score=47.39 Aligned_cols=148 Identities=11% Similarity=0.044 Sum_probs=92.6
Q ss_pred EECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcEEEEE
Q 021160 41 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFE 119 (316)
Q Consensus 41 ~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd 119 (316)
...++...+++.|+..+.+.--|..++++..+ .+ -...|.+-+.- -|.+++. +..|.+++.+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We-------------~i---lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE-------------AI---LGVRIECSAIV-VGDFVVLGCYSGGLYFLC 79 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEee-------------hh---hCceeeeeeEE-ECCEEEEEEccCcEEEEE
Confidence 33444447899999999999999998874321 11 12233333332 3555555 5899999999
Q ss_pred cCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEE
Q 021160 120 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ 199 (316)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~ 199 (316)
..++ .....+..-.. |.+-+-..+++..|.+|+.|++.+..|.++..++...+...+...+
T Consensus 80 ~~tG----------------s~~w~f~~~~~---vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 80 VKTG----------------SQIWNFVILET---VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS 140 (354)
T ss_pred ecch----------------hheeeeeehhh---hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceecc
Confidence 9988 44444443222 3222223778999999999999999999998888876644443444
Q ss_pred EEEcC-CCCeEEEEeCCCcEEEecCCC
Q 021160 200 LEPHP-HIPMFATCGIEKTVKLWAPMP 225 (316)
Q Consensus 200 ~~~~p-~~~~l~s~~~d~~i~iwd~~~ 225 (316)
-+..| ++.+ ..+...|.+.--..+.
T Consensus 141 P~i~~g~~sl-y~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 141 PVIAPGDGSL-YAAITAGAVLAVTKNP 166 (354)
T ss_pred ceecCCCceE-EEEeccceEEEEccCC
Confidence 55666 3333 3333345444434433
No 332
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.84 E-value=0.0022 Score=54.71 Aligned_cols=218 Identities=14% Similarity=0.206 Sum_probs=113.1
Q ss_pred ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccC-CC------------------------CC---CCCceecccccc
Q 021160 36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS-PI------------------------SS---DTPVDTFCPRHL 87 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~-~~------------------------~~---~~~~~~~~~~~~ 87 (316)
.|+.+.|.+.. .-|++|...|.|.||.....+... .. .. +.--+.|.+..+
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58899999987 789999999999999876543221 00 00 000123444555
Q ss_pred cCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcce------eeCCcCCceeeeEEEe-
Q 021160 88 IGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV------YSGHRNSQTVKGVNFF- 160 (316)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~- 160 (316)
.....++|++++.+.-|-..++..+|.+.|.|++.+ ..+.. +..+.....++++.|.
T Consensus 82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGP----------------avI~~~~i~~~~~~~~~~~~vt~ieF~v 145 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGP----------------AVIYNENIRESFLSKSSSSYVTSIEFSV 145 (395)
T ss_dssp E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTT----------------EEEEEEEGGG--T-SS----EEEEEEEE
T ss_pred eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCC----------------eEEeeccccccccccccccCeeEEEEEE
Confidence 556688999999985554444457999999999876 22221 1111222347777772
Q ss_pred ---cCCC---cEEEEeccCCeEEEEeccC---Cee----EEEeecCccceEEEE-EcCC--------------------C
Q 021160 161 ---GPND---EYVMSGSDCGHLFIWKKKG---GKL----VRLMVGDRHVVNQLE-PHPH--------------------I 206 (316)
Q Consensus 161 ---~~~~---~~l~~~~~dg~v~~wd~~~---~~~----~~~~~~~~~~v~~~~-~~p~--------------------~ 206 (316)
..|+ -.+++|+..|.+.+|.+.. +.. ......+.++|..+. ++.+ -
T Consensus 146 m~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i 225 (395)
T PF08596_consen 146 MTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISI 225 (395)
T ss_dssp EE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred EecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc
Confidence 2233 4788999999999998641 211 111123445555543 3211 1
Q ss_pred CeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeec-----CCCCceeEEecCCCeEEEEEecccCcc
Q 021160 207 PMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQ-----GREDHSRITLTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 207 ~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~d~~~~~w~~~~~~~~ 271 (316)
+.++....+..+|++.+...+ .+...... .....+.+ ...+..+++...+|.++++.+..-+..
T Consensus 226 ~g~vVvvSe~~irv~~~~~~k~~~K~~~~~-~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 226 PGYVVVVSESDIRVFKPPKSKGAHKSFDDP-FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp -EEEEEE-SSEEEEE-TT---EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred CcEEEEEcccceEEEeCCCCcccceeeccc-cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 123333447889999988765 21111111 11111112 224668899999999999998765433
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.0032 Score=56.81 Aligned_cols=168 Identities=13% Similarity=0.186 Sum_probs=103.0
Q ss_pred CCCcEEEEEecCCc-----EEEEeCcCCcccCCCCCCCCceeccccccc-CCCcccEEEEEEccCCCeEEEe-cCCcEEE
Q 021160 45 RNPNYFAVGGSDEY-----ARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELLISY-NDELVYL 117 (316)
Q Consensus 45 ~~~~~l~~g~~dg~-----v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~-~d~~i~i 117 (316)
++.++|++-+.|++ +++|+++.-+-. +.+..+......+.. .....++.+++.+.+-+.+|.| .+|.|..
T Consensus 75 ~~~~~L~sv~Ed~~~np~llkiw~lek~~~n---~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~ 151 (933)
T KOG2114|consen 75 NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN---NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVIC 151 (933)
T ss_pred cCceEEEEEeecCCCCceEEEEecccccCCC---CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEE
Confidence 34367777766654 899999855311 001112111111111 2246778899999887888887 7999988
Q ss_pred EEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee--EEEeecCcc
Q 021160 118 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL--VRLMVGDRH 195 (316)
Q Consensus 118 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~--~~~~~~~~~ 195 (316)
+.=+-. .. +-.+.-..|....+|+.+++ ..++..++....-..|.+|.+. |+. ...+..|..
T Consensus 152 ~~GDi~-------------RD-rgsr~~~~~~~~~pITgL~~-~~d~~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~G~ 215 (933)
T KOG2114|consen 152 YKGDIL-------------RD-RGSRQDYSHRGKEPITGLAL-RSDGKSVLFVATTEQVMLYSLS-GRTPSLKVLDNNGI 215 (933)
T ss_pred EcCcch-------------hc-cccceeeeccCCCCceeeEE-ecCCceeEEEEecceeEEEEec-CCCcceeeeccCCc
Confidence 853211 00 11122333555566999999 5556553333334678999987 443 444667778
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCC
Q 021160 196 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP 232 (316)
Q Consensus 196 ~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~ 232 (316)
..+|..+++....|+.++ +..+.+|+..... ..++.
T Consensus 216 ~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 216 SLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 899999998776566655 4689999988665 44454
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.0003 Score=61.69 Aligned_cols=132 Identities=13% Similarity=0.087 Sum_probs=87.9
Q ss_pred cccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC-cCCceeeeEEEecCCCcEEEE
Q 021160 92 NIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMS 169 (316)
Q Consensus 92 ~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~ 169 (316)
...+.--++...+++++.| +-|.+++|+-..+ ..+.++.. ... .+..+.. +++..++|.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~-----------------~~~~~~~~~~~~-~~~~~~v-s~~e~lvAa 93 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTG-----------------EMRKLKNEGATG-ITCVRSV-SSVEYLVAA 93 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCch-----------------hhhcccccCccc-eEEEEEe-cchhHhhhh
Confidence 3344444455667777775 7899999997766 22223221 211 1333444 888999999
Q ss_pred eccCCeEEEEeccCCee---EE--Ee-ecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-----CCCCCCCcccc
Q 021160 170 GSDCGHLFIWKKKGGKL---VR--LM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----FPPLPDNAEKI 238 (316)
Q Consensus 170 ~~~dg~v~~wd~~~~~~---~~--~~-~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~ 238 (316)
|+..|.|.++-++.+.+ +. .+ ..|...|++++|++++..+.+|...|+|..-.+.... .+.+......|
T Consensus 94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~I 173 (726)
T KOG3621|consen 94 GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEI 173 (726)
T ss_pred hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcce
Confidence 99999999998876432 11 11 2377899999999999999999999999888777621 23333344555
Q ss_pred eeee
Q 021160 239 MKAN 242 (316)
Q Consensus 239 ~~~~ 242 (316)
+++.
T Consensus 174 VQlD 177 (726)
T KOG3621|consen 174 VQLD 177 (726)
T ss_pred EEee
Confidence 5554
No 335
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.78 E-value=0.002 Score=43.44 Aligned_cols=102 Identities=16% Similarity=0.227 Sum_probs=65.4
Q ss_pred eEEEEE---CCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160 37 LNAIVI---DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 113 (316)
Q Consensus 37 v~~~~~---~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 113 (316)
|++|++ .-+|.+.|++|+.|..||+|+-..-- ..+ ...+.|+++.-...+++..+-.+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~----------------~Ei--~e~~~v~~L~~~~~~~F~Y~l~NG 63 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV----------------AEI--TETDKVTSLCSLGGGRFAYALANG 63 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE----------------EEE--ecccceEEEEEcCCCEEEEEecCC
Confidence 455554 45666899999999999999865321 111 124678888877776666666899
Q ss_pred cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC---cEEEEeccCCeEE
Q 021160 114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND---EYVMSGSDCGHLF 177 (316)
Q Consensus 114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~dg~v~ 177 (316)
+|-+|+-... +...+... .+.+++++..++ .-|++|-.+|.|-
T Consensus 64 TVGvY~~~~R------------------lWRiKSK~---~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 64 TVGVYDRSQR------------------LWRIKSKN---QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEEeCcce------------------eeeeccCC---CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9999986432 22223222 266676645443 2577787788764
No 336
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.77 E-value=8.3e-06 Score=70.35 Aligned_cols=163 Identities=16% Similarity=0.228 Sum_probs=101.4
Q ss_pred CCccceEEEEECCCCCcEEEEEe----cCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeE
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGG----SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 107 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~----~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 107 (316)
+|....++++|++-+.+.||+|- .|..+.|||+.++-.. |.... .+..+......+++|..+.+++
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltv-------Pke~~---~fs~~~l~gqns~cwlrd~klv 169 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTV-------PKESP---LFSSSTLDGQNSVCWLRDTKLV 169 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhcccCCccceecccccCC-------Ccccc---ccccccccCccccccccCcchh
Confidence 57788999999998767888873 4778999999876210 11110 0101123344578888777777
Q ss_pred EEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC-CCcEEEEeccCCeEEEEec-cCC
Q 021160 108 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKK-KGG 184 (316)
Q Consensus 108 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~~wd~-~~~ 184 (316)
.+| ....++++|++.. ..+...-.+ +.+..+.. .| .+.++++-. ||.|-+||. ..-
T Consensus 170 laGm~sr~~~ifdlRqs-----------------~~~~~svnT--k~vqG~tV-dp~~~nY~cs~~-dg~iAiwD~~rni 228 (783)
T KOG1008|consen 170 LAGMTSRSVHIFDLRQS-----------------LDSVSSVNT--KYVQGITV-DPFSPNYFCSNS-DGDIAIWDTYRNI 228 (783)
T ss_pred hcccccchhhhhhhhhh-----------------hhhhhhhhh--hhccccee-cCCCCCceeccc-cCceeeccchhhh
Confidence 776 5779999999854 111111112 12445555 55 677776655 999999993 322
Q ss_pred -eeEEEeecCc----cceEEEEEcCCCCe-EEEEe-CCCcEEEecCCC
Q 021160 185 -KLVRLMVGDR----HVVNQLEPHPHIPM-FATCG-IEKTVKLWAPMP 225 (316)
Q Consensus 185 -~~~~~~~~~~----~~v~~~~~~p~~~~-l~s~~-~d~~i~iwd~~~ 225 (316)
+++..+...+ ..+..++|+|...- +++.. ..++|+++++..
T Consensus 229 enpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 229 ENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 2222222111 35889999997643 55555 457899999763
No 337
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.74 E-value=0.011 Score=48.61 Aligned_cols=183 Identities=11% Similarity=-0.013 Sum_probs=101.9
Q ss_pred CceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe----------cCCcEEEEeCcCCccc
Q 021160 1 MVLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG----------SDEYARVYDIRKCHWY 70 (316)
Q Consensus 1 ~~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~----------~dg~v~~wd~~~~~~~ 70 (316)
|.+.|.|.|..+.+.+..+... -.-.+..+|++ +.+++++ ..-.|.+||..+.+..
T Consensus 15 ~~~rv~viD~d~~k~lGmi~~g-------------~~~~~~~spdg-k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~ 80 (342)
T PF06433_consen 15 MTSRVYVIDADSGKLLGMIDTG-------------FLGNVALSPDG-KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT 80 (342)
T ss_dssp SSEEEEEEETTTTEEEEEEEEE-------------SSEEEEE-TTS-SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE
T ss_pred ccceEEEEECCCCcEEEEeecc-------------cCCceeECCCC-CEEEEEEEEEeccccccceeEEEEEecCcCccc
Confidence 4577889998887766666554 23357789998 6666532 3456999999988644
Q ss_pred CCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec---CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeC
Q 021160 71 SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG 147 (316)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (316)
.++..+..-+ .. .. .....++++.+++++...+ -..|.+-|+..+ +.+..+..
T Consensus 81 ~EI~iP~k~R-----~~-~~--~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~----------------kvv~ei~~ 136 (342)
T PF06433_consen 81 GEIEIPPKPR-----AQ-VV--PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK----------------KVVGEIDT 136 (342)
T ss_dssp EEEEETTS-B--------BS----GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT----------------EEEEEEEG
T ss_pred ceEecCCcch-----he-ec--ccccceEEccCCcEEEEEccCCCCeEEEEECCCC----------------ceeeeecC
Confidence 3322221100 00 00 0112346778887555532 566888888766 55554443
Q ss_pred CcCCceeeeEEEecCCCcEEEEeccCCeEEEEecc-CCeeEEEee----cCccce-EEEEEcCCCCeEEEEeCCCcEEEe
Q 021160 148 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVRLMV----GDRHVV-NQLEPHPHIPMFATCGIEKTVKLW 221 (316)
Q Consensus 148 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~-~~~~~~~~~----~~~~~v-~~~~~~p~~~~l~s~~~d~~i~iw 221 (316)
.. +...| +..++-+.+-|.||.+.-..+. .|+...... .-..++ ..-++...+..++--+.+|.|+--
T Consensus 137 PG-----C~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~ 210 (342)
T PF06433_consen 137 PG-----CWLIY-PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSA 210 (342)
T ss_dssp TS-----EEEEE-EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEE
T ss_pred CC-----EEEEE-ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEE
Confidence 22 12223 3334557788889999988887 465542221 111222 233444444555556788888888
Q ss_pred cCCCCC
Q 021160 222 APMPTD 227 (316)
Q Consensus 222 d~~~~~ 227 (316)
|+....
T Consensus 211 dlsg~~ 216 (342)
T PF06433_consen 211 DLSGDS 216 (342)
T ss_dssp EETTSS
T ss_pred eccCCc
Confidence 877654
No 338
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00026 Score=61.30 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=65.5
Q ss_pred eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceE-EEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-QLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
+.-+.| +|.-.++|.+..+|.+.+..+. .+.+.+++-|...++ +++|.|||+.||.|=.||+|++.|+.++.
T Consensus 23 i~~~ew-nP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 23 IKRIEW-NPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred eEEEEE-cCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 788888 9999999999999999999988 777888886776676 99999999999999999999999999886
No 339
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.68 E-value=0.0023 Score=58.75 Aligned_cols=94 Identities=15% Similarity=0.208 Sum_probs=68.7
Q ss_pred eeeEEEEeeCCCcceEEE--eccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 3 LFNMLFDLRSDSATRLFY--CSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~--~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
..|..||.|-... +++. .+... .....+|++-+.+| +||+|+.+|.||+||- .++
T Consensus 552 n~lfriDpR~~~~-k~v~~~~k~Y~-------~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~------------ 608 (794)
T PF08553_consen 552 NSLFRIDPRLSGN-KLVDSQSKQYS-------SKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGK------------ 608 (794)
T ss_pred CceEEeccCCCCC-ceeeccccccc-------cCCCceEEEecCCc--eEEEEeCCCcEEeecc-cch------------
Confidence 3567788886542 2221 11111 24567888888877 8999999999999994 333
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcC
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKN 121 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~ 121 (316)
..++.+.+-..+|..|..+.||+++++..+..+.+++..
T Consensus 609 --~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 609 --RAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred --hhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 455555677899999999999998888888999999874
No 340
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.66 E-value=0.017 Score=45.14 Aligned_cols=57 Identities=11% Similarity=-0.018 Sum_probs=37.7
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCccc
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY 70 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~ 70 (316)
.|.|++.+.++......+.....- .+ .....+++ .++.+|+.|+..+..|.++..+.
T Consensus 72 ~g~lYfl~~~tGs~~w~f~~~~~v----------k~-~a~~d~~~-glIycgshd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 72 SGGLYFLCVKTGSQIWNFVILETV----------KV-RAQCDFDG-GLIYCGSHDGNFYALDPKTYGCV 128 (354)
T ss_pred cCcEEEEEecchhheeeeeehhhh----------cc-ceEEcCCC-ceEEEecCCCcEEEecccccceE
Confidence 466777777777544444432111 12 22345666 79999999999999999987743
No 341
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.66 E-value=0.00012 Score=55.53 Aligned_cols=105 Identities=14% Similarity=0.149 Sum_probs=64.6
Q ss_pred CeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC
Q 021160 105 ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 184 (316)
Q Consensus 105 ~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~ 184 (316)
++++.+.+|.|++|+..... .....+...... +.++--...++.+..+++.+|.|+.|+++.+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g---------------~~~d~~~s~~e~--i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEG---------------AHSDRVCSGEES--IDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred eEEeecccceEEEecCCccc---------------hHHHhhhccccc--ceeccccccccceeEEeccCCceeeeccccC
Confidence 35555689999999986331 111112211211 2222111334558889999999999999988
Q ss_pred eeEEEeecCc-cceEEEEEcCCCCeEEEE--eCCCcEEEecCCCC
Q 021160 185 KLVRLMVGDR-HVVNQLEPHPHIPMFATC--GIEKTVKLWAPMPT 226 (316)
Q Consensus 185 ~~~~~~~~~~-~~v~~~~~~p~~~~l~s~--~~d~~i~iwd~~~~ 226 (316)
+.+.....|. ..+..+..+..++.++.+ |.|..++.|++..-
T Consensus 135 k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 135 KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 8887777676 445555555555566655 66677777776543
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.60 E-value=0.023 Score=45.11 Aligned_cols=167 Identities=12% Similarity=0.118 Sum_probs=93.8
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cC
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 112 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 112 (316)
...++.++|+|+...++++....+.|..++.. ++++.. ..+ .+ .+....+++..++.++++. .+
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~------------i~l-~g-~~D~EgI~y~g~~~~vl~~Er~ 85 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRR------------IPL-DG-FGDYEGITYLGNGRYVLSEERD 85 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEE------------EE--SS--SSEEEEEE-STTEEEEEETTT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEE------------EeC-CC-CCCceeEEEECCCEEEEEEcCC
Confidence 34699999999865788888889999888874 553211 111 22 3457789998888777776 58
Q ss_pred CcEEEEEcCCCCCCCCccCCccccccCCCcceee--CC-cCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC---Cee
Q 021160 113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--GH-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---GKL 186 (316)
Q Consensus 113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~---~~~ 186 (316)
+.+.++++....... .. ...+.+. .. .....+..++| ++.++.|+.+-+..-..+|.++. ...
T Consensus 86 ~~L~~~~~~~~~~~~----~~------~~~~~~~l~~~~~~N~G~EGla~-D~~~~~L~v~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 86 QRLYIFTIDDDTTSL----DR------ADVQKISLGFPNKGNKGFEGLAY-DPKTNRLFVAKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp TEEEEEEE----TT------E------EEEEEEE---S---SS--EEEEE-ETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred CcEEEEEEecccccc----ch------hhceEEecccccCCCcceEEEEE-cCCCCEEEEEeCCCChhhEEEccccCccc
Confidence 999999985431000 00 0111111 11 12234899999 88877777777777777777653 222
Q ss_pred EEEe--e------cCccceEEEEEcCCCCe-EEEEeCCCcEEEecCCCC
Q 021160 187 VRLM--V------GDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT 226 (316)
Q Consensus 187 ~~~~--~------~~~~~v~~~~~~p~~~~-l~s~~~d~~i~iwd~~~~ 226 (316)
+... . .....+.+++++|.... ++....+..|..+|....
T Consensus 155 ~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~ 203 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR 203 (248)
T ss_dssp -EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--
T ss_pred eeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC
Confidence 2111 1 12345788999997544 666778888999995554
No 343
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00043 Score=56.76 Aligned_cols=84 Identities=11% Similarity=0.051 Sum_probs=67.9
Q ss_pred CCcceeeCCcCCceeeeEEEecCCCc-EEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCc
Q 021160 140 EEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKT 217 (316)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~s~~~d~~ 217 (316)
+..+.+.++. ..|.+++| +|... ++..++.+..|++.|+++...+..+..+ ..+++++|.-+... |..|-..|.
T Consensus 184 kssq~lp~~g--~~Irdlaf-Sp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 184 KSSQILPGEG--SFIRDLAF-SPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred chhhcccccc--hhhhhhcc-CccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence 4445445555 34999999 67655 8899999999999999999999888888 68999999988765 666778899
Q ss_pred EEEecCCCCC
Q 021160 218 VKLWAPMPTD 227 (316)
Q Consensus 218 i~iwd~~~~~ 227 (316)
|.|||++..+
T Consensus 260 VlvyD~R~~~ 269 (463)
T KOG1645|consen 260 VLVYDMRQPE 269 (463)
T ss_pred EEEEEccCCC
Confidence 9999998654
No 344
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.52 E-value=0.003 Score=57.93 Aligned_cols=146 Identities=11% Similarity=0.198 Sum_probs=86.9
Q ss_pred cEEEEE-ecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc------CCCeEEEecCCcEEEEEc
Q 021160 48 NYFAVG-GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN------TSELLISYNDELVYLFEK 120 (316)
Q Consensus 48 ~~l~~g-~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l~s~~d~~i~iwd~ 120 (316)
++|+.. .....|+-.|++.|++..+... ....+|..++-.. ....+++-++..+..||.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~--------------~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDp 559 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKV--------------HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDP 559 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeec--------------CCCcceeEecccccccccCCCceEEEECCCceEEecc
Confidence 444443 4567788889998885432111 1112233332211 112455557899999999
Q ss_pred CCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEE
Q 021160 121 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQL 200 (316)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~ 200 (316)
+.... . +- ....+.+. .. ....|++- + ...+||+|+.+|.||+||--..+....+++-..+|..|
T Consensus 560 R~~~~-k--------~v-~~~~k~Y~-~~--~~Fs~~aT-t-~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~i 624 (794)
T PF08553_consen 560 RLSGN-K--------LV-DSQSKQYS-SK--NNFSCFAT-T-EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGI 624 (794)
T ss_pred CCCCC-c--------ee-eccccccc-cC--CCceEEEe-c-CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEE
Confidence 86410 0 00 00111121 11 22677765 4 45579999999999999954333334556767899999
Q ss_pred EEcCCCCeEEEEeCCCcEEEecC
Q 021160 201 EPHPHIPMFATCGIEKTVKLWAP 223 (316)
Q Consensus 201 ~~~p~~~~l~s~~~d~~i~iwd~ 223 (316)
..+.||++++..+ +..+.+++.
T Consensus 625 Dvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 625 DVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EecCCCcEEEEee-cceEEEEEE
Confidence 9999999966555 567777774
No 345
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.00023 Score=64.26 Aligned_cols=125 Identities=16% Similarity=0.146 Sum_probs=91.1
Q ss_pred CCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC-CC-
Q 021160 139 REEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK- 216 (316)
Q Consensus 139 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~-d~- 216 (316)
.+..+.|..+... .+|++| +.+.++|+.|+..|.|++|++.+|.......+|.++|+.+.-+.+|..+++.+. ..
T Consensus 1091 Fr~w~~frd~~~~--fTc~af-s~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1091 FRSWRSFRDETAL--FTCIAF-SGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred cccchhhhccccc--eeeEEe-ecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence 3556667777755 899999 899999999999999999999999999999999999999999999988665543 33
Q ss_pred cEEEecCCCCC--CCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160 217 TVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 217 ~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~ 271 (316)
...+|+....- .+++.+. ....++......+.++......++|+++...+
T Consensus 1168 lsaLW~~~s~~~~~Hsf~ed-----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDED-----KAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred hHHHhccccccCcccccccc-----ceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence 56789986532 3333321 22223333334444555566788999887554
No 346
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.47 E-value=0.058 Score=46.65 Aligned_cols=62 Identities=6% Similarity=-0.010 Sum_probs=40.3
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 226 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~ 226 (316)
+.+....+....++.+.+.+-...+. +. ..+++..++.||+++++|.-..+|.+.+....-.
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 34444555555555666444332211 22 2368999999999999999998999988875443
No 347
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.41 E-value=0.00032 Score=37.17 Aligned_cols=30 Identities=17% Similarity=0.457 Sum_probs=27.5
Q ss_pred CccceEEEEECCCCCcEEEEEecCCcEEEEe
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYD 63 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd 63 (316)
|...|.++.|++.+ .++++++.|+.+++|+
T Consensus 11 ~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 67789999999988 8999999999999996
No 348
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.41 E-value=0.023 Score=48.16 Aligned_cols=249 Identities=12% Similarity=0.045 Sum_probs=118.5
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCC-CCce
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSD-TPVD 80 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~-~~~~ 80 (316)
.+...|+|+.+.+..++... ...+....|+|+| +.++.. .++.|.+++..+++....-... ..+.
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~------------~~~~~~~~~sP~g-~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~ 87 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP------------PPKLQDAKWSPDG-KYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIY 87 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E------------ETTBSEEEE-SSS-TEEEEE-ETTEEEEESSTTSEEEESES--TTTEE
T ss_pred ceeEEEEecCCCceEECcCC------------ccccccceeecCC-CeeEEE-ecCceEEEECCCCCeEEeccccceeEE
Confidence 35678888887654433322 2367899999998 676665 4588999998776533221111 0110
Q ss_pred ecccccccCCC-cccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCCCC-------------------CCccCCcccccc
Q 021160 81 TFCPRHLIGKN-NIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGP-------------------SPLSLSPEDLQK 138 (316)
Q Consensus 81 ~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~-------------------~~~~~~~~~~~~ 138 (316)
.-.+..+.... -+.-..+-|+|+++.|+.. .+..|..+.+...... ....+-+.++.+
T Consensus 88 nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~ 167 (353)
T PF00930_consen 88 NGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLAS 167 (353)
T ss_dssp ESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSS
T ss_pred cCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCC
Confidence 00000000000 1123468899999977773 5666555544322110 001111122333
Q ss_pred CCCcceeeCC----cCCceeeeEEEecCCCcEEEEec--c---CCeEEEEeccCCeeEEEeec-Cccc---eEEEEEc-C
Q 021160 139 REEPQVYSGH----RNSQTVKGVNFFGPNDEYVMSGS--D---CGHLFIWKKKGGKLVRLMVG-DRHV---VNQLEPH-P 204 (316)
Q Consensus 139 ~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~~~~--~---dg~v~~wd~~~~~~~~~~~~-~~~~---v~~~~~~-p 204 (316)
.+.. .+... .....+..+.| .+++..++..- . .-.+.++|..+++....+.. .... -....|. +
T Consensus 168 ~~~~-~~~~~~~~~~~~~yl~~v~W-~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~ 245 (353)
T PF00930_consen 168 GKTT-ELDPPNSLNPQDYYLTRVGW-SPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGP 245 (353)
T ss_dssp TCCC-EE---HHHHTSSEEEEEEEE-EETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TT
T ss_pred CcEE-EeeeccccCCCccCccccee-cCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccC
Confidence 3221 11111 12234788888 77877333322 2 22466778877654333322 1222 2345554 6
Q ss_pred CCCe-EEEEeCCCc--EEEecCCCCCCCCCCCCcccceeeeecCCC-CceeEEecCC--CeEEEEEec
Q 021160 205 HIPM-FATCGIEKT--VKLWAPMPTDFPPLPDNAEKIMKANKQGRE-DHSRITLTPD--VIMHVLRLQ 266 (316)
Q Consensus 205 ~~~~-l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d--~~~~~w~~~ 266 (316)
++.. +.....||. |.+++..++....+....-.+.....+..+ +.+.+++..+ ..-++|.+.
T Consensus 246 ~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 246 DGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp TSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred CCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 6655 444446775 555566666555555444455555556664 4444555553 233444443
No 349
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.40 E-value=0.026 Score=50.34 Aligned_cols=92 Identities=11% Similarity=0.036 Sum_probs=61.3
Q ss_pred CCeEEEEeccC-----CeeEEEeecCccceEEEEEcCCCCeEEE-EeCCCcEEEecCCCCCC-------------CCCCC
Q 021160 173 CGHLFIWKKKG-----GKLVRLMVGDRHVVNQLEPHPHIPMFAT-CGIEKTVKLWAPMPTDF-------------PPLPD 233 (316)
Q Consensus 173 dg~v~~wd~~~-----~~~~~~~~~~~~~v~~~~~~p~~~~l~s-~~~d~~i~iwd~~~~~~-------------~~~~~ 233 (316)
++.|.+.|..+ .+.+..+... .....+.++|||++++. +..+.++.|.|++..+. .+..-
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 45688888877 3455555433 35678999999999554 45689999999987441 11111
Q ss_pred CcccceeeeecCCCCceeEEecCCCeEEEEEecc
Q 021160 234 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 267 (316)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~ 267 (316)
...++ ... +..++....|.--|..+-.|++..
T Consensus 374 GlGPL-HTa-FDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPL-HTA-FDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcc-eEE-ECCCCCEEEeEeecceeEEEehHH
Confidence 11221 222 455677888888899999999876
No 350
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.32 E-value=0.046 Score=49.43 Aligned_cols=148 Identities=7% Similarity=0.040 Sum_probs=80.5
Q ss_pred cceEEEEECCCCCcEEEEEe------cCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEE
Q 021160 35 IRLNAIVIDPRNPNYFAVGG------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI 108 (316)
Q Consensus 35 ~~v~~~~~~~~~~~~l~~g~------~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 108 (316)
..+.+.+++|++ ..++... .|..-.||-...+. ....+..+ ...+.-.|+|+|..+.
T Consensus 350 ~~vsspaiSpdG-~~vA~v~~~~~~~~d~~s~Lwv~~~gg--------------~~~~lt~g--~~~t~PsWspDG~~lw 412 (591)
T PRK13616 350 GNITSAALSRSG-RQVAAVVTLGRGAPDPASSLWVGPLGG--------------VAVQVLEG--HSLTRPSWSLDADAVW 412 (591)
T ss_pred cCcccceECCCC-CEEEEEEeecCCCCCcceEEEEEeCCC--------------cceeeecC--CCCCCceECCCCCceE
Confidence 467889999999 5554443 24444455433222 01111122 1367789999987555
Q ss_pred EecCC-------------cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCe
Q 021160 109 SYNDE-------------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH 175 (316)
Q Consensus 109 s~~d~-------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 175 (316)
+..|+ .+.+.+++.+ ...+ .... .|..+.| +|||..++... ++.
T Consensus 413 ~v~dg~~~~~v~~~~~~gql~~~~vd~g----------------e~~~---~~~g--~Issl~w-SpDG~RiA~i~-~g~ 469 (591)
T PRK13616 413 VVVDGNTVVRVIRDPATGQLARTPVDAS----------------AVAS---RVPG--PISELQL-SRDGVRAAMII-GGK 469 (591)
T ss_pred EEecCcceEEEeccCCCceEEEEeccCc----------------hhhh---ccCC--CcCeEEE-CCCCCEEEEEE-CCE
Confidence 53322 2333333332 1211 1222 3999999 99999988776 477
Q ss_pred EEE---EeccCCee-E---EEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160 176 LFI---WKKKGGKL-V---RLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 223 (316)
Q Consensus 176 v~~---wd~~~~~~-~---~~~~-~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~ 223 (316)
|++ -....|.. + ..+. +-...+.++.|.+++.++ .+..++...+|.+
T Consensus 470 v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 470 VYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 776 44444541 1 1122 222346889999998854 4444444445543
No 351
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0016 Score=56.73 Aligned_cols=93 Identities=10% Similarity=0.125 Sum_probs=72.7
Q ss_pred cccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee-eEEEecCCCcEEEE
Q 021160 92 NIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK-GVNFFGPNDEYVMS 169 (316)
Q Consensus 92 ~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~ 169 (316)
...+..+.|+|.-.++|.. .+|.|.+..+.- ..+.++.-+... ++ +++| .|||++|+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-----------------qRlwtip~p~~~--v~~sL~W-~~DGkllaV 79 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW-----------------QRLWTIPIPGEN--VTASLCW-RPDGKLLAV 79 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc-----------------ceeEeccCCCCc--cceeeee-cCCCCEEEE
Confidence 4568889999999888885 789899988863 355566544433 55 9999 999999999
Q ss_pred eccCCeEEEEeccCCeeEEEee-cCccceEEEEEcC
Q 021160 170 GSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHP 204 (316)
Q Consensus 170 ~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~p 204 (316)
|-.||+|++.|..++..+..+. .....|.++-|.|
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 9999999999999988776632 2345778888864
No 352
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.29 E-value=0.037 Score=44.02 Aligned_cols=184 Identities=14% Similarity=0.152 Sum_probs=94.9
Q ss_pred cccEEEEEEccCCCeEEE-e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEE
Q 021160 92 NIHITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 169 (316)
Q Consensus 92 ~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 169 (316)
...+..++|+|+...|++ . ..+.|..++.+. +.++.+.-... .....+++ -.++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-----------------~vlr~i~l~g~-~D~EgI~y-~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-----------------KVLRRIPLDGF-GDYEGITY-LGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT-------------------EEEEEE-SS--SSEEEEEE--STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-----------------CEEEEEeCCCC-CCceeEEE-ECCCEEEEE
Confidence 445999999998764444 4 577888888753 35555543221 23788888 677777776
Q ss_pred eccCCeEEEEeccCCe------eEEEee-----cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCC--CC--CC-----
Q 021160 170 GSDCGHLFIWKKKGGK------LVRLMV-----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP--TD--FP----- 229 (316)
Q Consensus 170 ~~~dg~v~~wd~~~~~------~~~~~~-----~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~--~~--~~----- 229 (316)
--.++.+.++++.... ....+. .+...+-.++|.|.++.|+.+-+..-..+|.+.. .. +.
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~ 161 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQ 161 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-H
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccc
Confidence 6668999999984321 112221 2345688999999988877777776677777654 11 10
Q ss_pred CC---CCCcccceeeeecCCCCceeEEecCCCeEEEEEecccCcceeEEee----------cccccccccCCCCeEEEEe
Q 021160 230 PL---PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERR----------YNAADFESDEEEGETYLLG 296 (316)
Q Consensus 230 ~~---~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~v~~~~ 296 (316)
.+ ......+..+...+..+++++-...+..+..+| ..++........ ++..-++.+ ++|++|++.
T Consensus 162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d-~~G~LYIvs 239 (248)
T PF06977_consen 162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD-PDGNLYIVS 239 (248)
T ss_dssp HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE--TT--EEEEE
T ss_pred ccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC-CCCCEEEEc
Confidence 00 001112222332233566666666677777776 333332222111 233334333 467888875
No 353
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.0025 Score=58.96 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=71.1
Q ss_pred cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCC
Q 021160 48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP 126 (316)
Q Consensus 48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 126 (316)
..++.|+..|.+...|....= ++..--.....+|++++|+.+|.+++.| .+|.|.+||...+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL--------------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--- 162 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNL--------------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--- 162 (1206)
T ss_pred eeEEEEcCchhhhhhhhhccc--------------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---
Confidence 578899999999998886431 2111113346799999999999988887 7999999999987
Q ss_pred CCccCCccccccCCCcceeeCCcCCc-eeeeEEEecCCCcEEEEeccCCeEEEEe
Q 021160 127 SPLSLSPEDLQKREEPQVYSGHRNSQ-TVKGVNFFGPNDEYVMSGSDCGHLFIWK 180 (316)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~~dg~v~~wd 180 (316)
+..+.+..+..+. .+..+.+ ..++..++++...|. +|.
T Consensus 163 -------------k~l~~i~e~~ap~t~vi~v~~-t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 163 -------------KILKVITEHGAPVTGVIFVGR-TSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred -------------cceeeeeecCCccceEEEEEE-eCCCcEEEEccCCCc--eEE
Confidence 6777776555431 2444555 455667888777776 455
No 354
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.0054 Score=52.54 Aligned_cols=142 Identities=11% Similarity=0.157 Sum_probs=89.9
Q ss_pred EEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC--------eEEEecCCcEEEEEc
Q 021160 49 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--------LLISYNDELVYLFEK 120 (316)
Q Consensus 49 ~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~l~s~~d~~i~iwd~ 120 (316)
++..+.....++-.|++.|+++.+. .-+. .|.-+.+.|+.+ -|++-++..|+-||.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEW---------------k~~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDp 411 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEW---------------KFED-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDP 411 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEe---------------eccC-CcceeeccCCcchhcccccccEEeecCCceEEecc
Confidence 4555667788888999998854221 1122 266666777653 234446889999998
Q ss_pred CCCCCCCCccCCccccccCCCcceeeCCcC--CceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceE
Q 021160 121 NMGLGPSPLSLSPEDLQKREEPQVYSGHRN--SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN 198 (316)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~ 198 (316)
+-... ..+....+|.- .....|.+- ....+|++|+.+|.|++||--.-+....+++-..+|.
T Consensus 412 Rv~~~--------------~kl~~~q~kqy~~k~nFsc~aT--T~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~ 475 (644)
T KOG2395|consen 412 RVQGK--------------NKLAVVQSKQYSTKNNFSCFAT--TESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIK 475 (644)
T ss_pred cccCc--------------ceeeeeeccccccccccceeee--cCCceEEEeecCCcEEeehhhhhhhhhcccccCCcee
Confidence 75410 01111222221 111455553 4556899999999999999743333445677788999
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEecC
Q 021160 199 QLEPHPHIPMFATCGIEKTVKLWAP 223 (316)
Q Consensus 199 ~~~~~p~~~~l~s~~~d~~i~iwd~ 223 (316)
.+..+.+|++|+..+ +..+.+-++
T Consensus 476 hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 476 HVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eEEeeccCcEEEEec-ccEEEEEEE
Confidence 999999999976555 556666654
No 355
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.00094 Score=60.16 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=81.4
Q ss_pred EEEEccCCCeEEEe-----cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec
Q 021160 97 GLAYSNTSELLISY-----NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 171 (316)
Q Consensus 97 ~~~~~~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 171 (316)
-..|+|...+++.+ ..|.|.||-- ++ .+.+... .+ -.+++++| +|..-.|+.|=
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfad-tG----------------EPqr~Vt-~P--~hatSLCW-Hpe~~vLa~gw 78 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFAD-TG----------------EPQRDVT-YP--VHATSLCW-HPEEFVLAQGW 78 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEec-CC----------------CCCcccc-cc--eehhhhcc-ChHHHHHhhcc
Confidence 35688887765542 2788888843 33 2222222 11 12678999 88888889999
Q ss_pred cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 021160 172 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 224 (316)
Q Consensus 172 ~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~ 224 (316)
.-|.+.+|...+.+.-.....|+.+|.-+.|||+|..++++..-|.+.+|...
T Consensus 79 e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 79 EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 99999999998777666666799999999999999999999999999999765
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.12 Score=44.45 Aligned_cols=177 Identities=11% Similarity=0.086 Sum_probs=113.5
Q ss_pred eeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe--cCCcEEEEeCcCCcccCCCCCCCCce
Q 021160 3 LFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCHWYSPISSDTPVD 80 (316)
Q Consensus 3 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~--~dg~v~~wd~~~~~~~~~~~~~~~~~ 80 (316)
+.|.+.|+.+.+......... ....++++|++....++-. .++.+.+.|..+.+..
T Consensus 96 ~~v~vid~~~~~~~~~~~vG~------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~---------- 153 (381)
T COG3391 96 NTVSVIDTATNTVLGSIPVGL------------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT---------- 153 (381)
T ss_pred CeEEEEcCcccceeeEeeecc------------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE----------
Confidence 456777765555444443321 3468999999844444444 3788999998887732
Q ss_pred ecccccccCCCcccEEEEEEccCCCeEEE--ecCCcEEEEEcCCCCCCCCccCCccccccCCCcc-----eeeCCcCCce
Q 021160 81 TFCPRHLIGKNNIHITGLAYSNTSELLIS--YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-----VYSGHRNSQT 153 (316)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 153 (316)
.....+ ..+ ..+++.|+|+.+.. ..++.|.+.|.... ...+ .+.... .
T Consensus 154 ----~~~~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~----------------~v~~~~~~~~~~~~~---~ 208 (381)
T COG3391 154 ----ATIPVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN----------------SVVRGSVGSLVGVGT---G 208 (381)
T ss_pred ----EEEecC-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc----------------ceeccccccccccCC---C
Confidence 112122 123 78999999984444 35999999997654 1221 111111 1
Q ss_pred eeeEEEecCCCcEEEEeccC---CeEEEEeccCCeeEEE-eecCccceEEEEEcCCCCeEEEE-eCCCcEEEecCCCCC
Q 021160 154 VKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGGKLVRL-MVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTD 227 (316)
Q Consensus 154 i~~~~~~~~~~~~l~~~~~d---g~v~~wd~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~s~-~~d~~i~iwd~~~~~ 227 (316)
...+.+ ++++.++...... +.+...|..++..... +..-......+..+|+++.+... +..+.+.+-|.....
T Consensus 209 P~~i~v-~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 209 PAGIAV-DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CceEEE-CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 456777 8999977666544 5899999998887665 22222145678999999987666 344788888887765
No 357
>PHA02713 hypothetical protein; Provisional
Probab=97.17 E-value=0.026 Score=50.96 Aligned_cols=91 Identities=2% Similarity=0.043 Sum_probs=46.1
Q ss_pred eEEEEeccCCeeE--EEeecCccceEEEEEcCCCCeEEEEeCC------CcEEEecCCC-CCCCCCCCCcccceeeeecC
Q 021160 175 HLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGIE------KTVKLWAPMP-TDFPPLPDNAEKIMKANKQG 245 (316)
Q Consensus 175 ~v~~wd~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l~s~~~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~ 245 (316)
.+..||+.+.+-. ..+....... +++ .-++++.+.|+.+ ..+..||+.+ .+...+..-..+........
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 4777887765432 2222111111 122 2256776777654 2467899998 56333322222222222223
Q ss_pred CCCceeEEecCCC--eEEEEEecc
Q 021160 246 REDHSRITLTPDV--IMHVLRLQR 267 (316)
Q Consensus 246 ~~~~~~~s~~~d~--~~~~w~~~~ 267 (316)
.++.+.+.|+.++ .+..+|..+
T Consensus 511 ~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 511 HDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred ECCEEEEEeeecceeehhhcCccc
Confidence 3677888888777 444555443
No 358
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.14 E-value=0.037 Score=37.47 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=64.9
Q ss_pred eeeEEEecCCC---cEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 021160 154 VKGVNFFGPND---EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP 230 (316)
Q Consensus 154 i~~~~~~~~~~---~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~ 230 (316)
|+++++..-++ ..|++|++|..|++|+-. +.+..+.. .+.|++++-... ..|+.+-.+|+|-+|+-.....+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWR- 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWR- 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeee-
Confidence 55666543333 579999999999999754 56666654 357888877665 56888889999999976443322
Q ss_pred CCCCcccceeeeecCCC---CceeEEecCCCeEE
Q 021160 231 LPDNAEKIMKANKQGRE---DHSRITLTPDVIMH 261 (316)
Q Consensus 231 ~~~~~~~~~~~~~~~~~---~~~~~s~~~d~~~~ 261 (316)
...... +..+.....+ -.-++++-++|.+-
T Consensus 77 iKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 221222 3344434332 23577777777654
No 359
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.10 E-value=0.016 Score=50.31 Aligned_cols=182 Identities=13% Similarity=0.088 Sum_probs=88.7
Q ss_pred cceEEEEECCCCCcEEEEEecCCcEEEE-eCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160 35 IRLNAIVIDPRNPNYFAVGGSDEYARVY-DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 113 (316)
Q Consensus 35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~w-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 113 (316)
+.-..++|.+.+ .+|+-...+.|.++ ++.... ...+. . ...+..+ |. |.+|....++
T Consensus 69 G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~----------~k~i~-----~--~~~~~~I-f~--G~LL~~~~~~ 126 (443)
T PF04053_consen 69 GSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNEV----------VKSIK-----L--PFSVEKI-FG--GNLLGVKSSD 126 (443)
T ss_dssp EE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T----------T------------SS-EEEE-E---SSSEEEEETT
T ss_pred CceeEEEEecCc--cEEEEECCCeEEEEEcCcccc----------ceEEc-----C--CcccceE-Ec--CcEEEEECCC
Confidence 445677888854 57777778889996 443221 00111 1 1123333 22 8877777677
Q ss_pred cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC---------
Q 021160 114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--------- 184 (316)
Q Consensus 114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~--------- 184 (316)
.|.+||+.++ +.++.+.... |..+.| ++++.+++..+.+ .+.+++....
T Consensus 127 ~i~~yDw~~~----------------~~i~~i~v~~----vk~V~W-s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g 184 (443)
T PF04053_consen 127 FICFYDWETG----------------KLIRRIDVSA----VKYVIW-SDDGELVALVTKD-SIYILKYNLEAVAAIPEEG 184 (443)
T ss_dssp EEEEE-TTT------------------EEEEESS-E-----EEEEE--TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB
T ss_pred CEEEEEhhHc----------------ceeeEEecCC----CcEEEE-ECCCCEEEEEeCC-eEEEEEecchhcccccccC
Confidence 9999999988 6666666432 788988 9999999988865 5666664422
Q ss_pred --eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEE
Q 021160 185 --KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV 262 (316)
Q Consensus 185 --~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~ 262 (316)
.....+..-...|.+.+|..+ .|+-.... .++. +-.+....+. |.+..+.+....+..+.+.....++.+..
T Consensus 185 ~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~-~ld~~~yllgy~~~~~~ly~~Dr~~~v~~ 258 (443)
T PF04053_consen 185 VEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIA-HLDKPLYLLGYLPKENRLYLIDRDGNVIS 258 (443)
T ss_dssp -GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEE-E-SS--EEEEEETTTTEEEEE-TT--EEE
T ss_pred chhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEE-EcCCceEEEEEEccCCEEEEEECCCCEEE
Confidence 023333322467888999766 54444433 6665 3333322221 11222333333444456666677777766
Q ss_pred EEec
Q 021160 263 LRLQ 266 (316)
Q Consensus 263 w~~~ 266 (316)
+.+.
T Consensus 259 ~~ld 262 (443)
T PF04053_consen 259 YELD 262 (443)
T ss_dssp EE--
T ss_pred EEEC
Confidence 6554
No 360
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.06 E-value=0.13 Score=44.20 Aligned_cols=172 Identities=13% Similarity=0.063 Sum_probs=87.4
Q ss_pred CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceeccccc--ccCCCcccEEEEEEcc-----CCC
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH--LIGKNNIHITGLAYSN-----TSE 105 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~-----~~~ 105 (316)
..++|++++.+.-| ++|+|..+|.+.|.|++...++... .... ........++++.|.. |+.
T Consensus 85 ~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~---------~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 85 KQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNE---------NIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp -S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEE---------EGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred cCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeec---------cccccccccccccCeeEEEEEEEecCCCcc
Confidence 36899999998776 8999999999999999876643210 1111 2123455678888863 332
Q ss_pred ----eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecC-------------------
Q 021160 106 ----LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP------------------- 162 (316)
Q Consensus 106 ----~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------------- 162 (316)
++++.+.|.+.+|.+.-... ..+.. ........+... +..+...+.
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~---g~f~v------~~~~~~~~~~~~--i~~I~~i~~~~G~~a~At~~~~~~l~~g 222 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSN---GRFSV------QFAGATTNHDSP--ILSIIPINADTGESALATISAMQGLSKG 222 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GG---G-EEE------EEEEEE--SS------EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred cceEEEEEeCCCCEEEEEEecCCC---CceEE------EEeeccccCCCc--eEEEEEEECCCCCcccCchhHhhccccC
Confidence 44445789999998752100 00000 000011112211 333322111
Q ss_pred --CCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEc-----CCCCeEEEEeCCCcEEEecCCCCC
Q 021160 163 --NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH-----PHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 163 --~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
...++++++ +..++++...+.+..+......-....+.+- ..+..|++-..+|.|+++.+..-+
T Consensus 223 ~~i~g~vVvvS-e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 223 ISIPGYVVVVS-ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp ----EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred CCcCcEEEEEc-ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 122444444 6789999988877665544322233334442 245568888899999999988755
No 361
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.06 E-value=0.0024 Score=36.00 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=29.8
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 194 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 194 ~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
...|..++|+|...+||.+..+|.|.++.+...+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 3578999999999999999999999999985543
No 362
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.04 E-value=0.12 Score=43.19 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=93.5
Q ss_pred eeeEEEEeeCC-C-cceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCc-ccCCCCCCCCc
Q 021160 3 LFNMLFDLRSD-S-ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH-WYSPISSDTPV 79 (316)
Q Consensus 3 g~v~vwd~~~~-~-~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~-~~~~~~~~~~~ 79 (316)
|.|.++++... . ..++...+... .+++|++++-- .+ . ++++. ...|.+|++...+ +.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~-------~~g~V~ai~~~-~~-~-lv~~~-g~~l~v~~l~~~~~l~--------- 121 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTE-------VKGPVTAICSF-NG-R-LVVAV-GNKLYVYDLDNSKTLL--------- 121 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEE-------ESS-EEEEEEE-TT-E-EEEEE-TTEEEEEEEETTSSEE---------
T ss_pred cEEEEEEEEcccccceEEEEEEEEe-------ecCcceEhhhh-CC-E-EEEee-cCEEEEEEccCcccch---------
Confidence 88999999874 1 11111111111 46789999877 34 4 44443 4889999998765 21
Q ss_pred eecccccccCCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEE
Q 021160 80 DTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN 158 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 158 (316)
.... ......+.++... +.+++.+ .-..+.++..+... ..+..+........++++.
T Consensus 122 ----~~~~-~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~---------------~~l~~va~d~~~~~v~~~~ 179 (321)
T PF03178_consen 122 ----KKAF-YDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEEN---------------NKLILVARDYQPRWVTAAE 179 (321)
T ss_dssp ----EEEE-E-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTT---------------E-EEEEEEESS-BEEEEEE
T ss_pred ----hhhe-ecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccC---------------CEEEEEEecCCCccEEEEE
Confidence 1111 1112256666554 4455554 46666666544320 1233333333334588888
Q ss_pred EecCCCcEEEEeccCCeEEEEeccC-------C--eeEEEeecC-ccceEEE---EEcCC--C------CeEEEEeCCCc
Q 021160 159 FFGPNDEYVMSGSDCGHLFIWKKKG-------G--KLVRLMVGD-RHVVNQL---EPHPH--I------PMFATCGIEKT 217 (316)
Q Consensus 159 ~~~~~~~~l~~~~~dg~v~~wd~~~-------~--~~~~~~~~~-~~~v~~~---~~~p~--~------~~l~s~~~d~~ 217 (316)
| -++++.++.+..+|.+.++.... + ++.....-| ...|+++ ++.|. + +.++.++.+|.
T Consensus 180 ~-l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~ 258 (321)
T PF03178_consen 180 F-LVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGS 258 (321)
T ss_dssp E-E-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-
T ss_pred E-ecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCE
Confidence 8 44556899999999999998762 2 222222222 2456766 55552 2 13777888998
Q ss_pred EEEe
Q 021160 218 VKLW 221 (316)
Q Consensus 218 i~iw 221 (316)
|.+.
T Consensus 259 Ig~l 262 (321)
T PF03178_consen 259 IGVL 262 (321)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8743
No 363
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.16 Score=41.88 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=65.8
Q ss_pred CCcccEEEEEEccCCCeEE-E-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEE
Q 021160 90 KNNIHITGLAYSNTSELLI-S-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 167 (316)
Q Consensus 90 ~~~~~i~~~~~~~~~~~l~-s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 167 (316)
.+-..-+.|+|+|+++.|. + +..+.|+.|++......... +....+... .....-.++. ..+|.+.
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~----------~~~~~~~~~-~~G~PDG~~v-DadG~lw 227 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG----------RRGFVDFDE-EPGLPDGMAV-DADGNLW 227 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC----------cceEEEccC-CCCCCCceEE-eCCCCEE
Confidence 3344556899999997444 4 35688888887631000000 111111111 1122445555 6778877
Q ss_pred EEeccCC-eEEEEeccCCeeEEEeecCccceEEEEEc-CCCCe-EEEEe
Q 021160 168 MSGSDCG-HLFIWKKKGGKLVRLMVGDRHVVNQLEPH-PHIPM-FATCG 213 (316)
Q Consensus 168 ~~~~~dg-~v~~wd~~~~~~~~~~~~~~~~v~~~~~~-p~~~~-l~s~~ 213 (316)
+++...| .|..|+.. |+++..+......+++++|- |+.+. ++|+.
T Consensus 228 ~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 228 VAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 6555444 89999998 99998888776777888884 44455 34443
No 364
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.92 E-value=0.011 Score=50.15 Aligned_cols=102 Identities=14% Similarity=0.116 Sum_probs=63.4
Q ss_pred cCCCcEEEEec---------cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 021160 161 GPNDEYVMSGS---------DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL 231 (316)
Q Consensus 161 ~~~~~~l~~~~---------~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~ 231 (316)
|||+++++... ..+.+.++|+.+++....... ...+....|+|+|+.+|-.. ++.|.+++..++....+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 46777766643 245789999998875544333 56788899999999988876 78999999876653222
Q ss_pred CCCc--------------cc---ceeeeecCCCCceeEEecCC-CeEEEEE
Q 021160 232 PDNA--------------EK---IMKANKQGREDHSRITLTPD-VIMHVLR 264 (316)
Q Consensus 232 ~~~~--------------~~---~~~~~~~~~~~~~~~s~~~d-~~~~~w~ 264 (316)
.... ++ .....||+++++.++....| ..++.+.
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYP 129 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEE
Confidence 2111 11 23456788888887765543 3334333
No 365
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.88 E-value=0.13 Score=39.78 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=66.8
Q ss_pred EEEEEccCCC-eEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC
Q 021160 96 TGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC 173 (316)
Q Consensus 96 ~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 173 (316)
+.++|+.+.+ +... +.+-.|.-||.+-..+.....-.+.++.+.++ +. +. ..-.++. ..+|.+.++.-..
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~---~e-~~---~PDGm~I-D~eG~L~Va~~ng 232 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQP---FE-SL---EPDGMTI-DTEGNLYVATFNG 232 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCC---cC-CC---CCCcceE-ccCCcEEEEEecC
Confidence 4688987776 4444 56888888885443333333322333322211 11 11 1234444 6688888888899
Q ss_pred CeEEEEeccCCeeEEEeecCccceEEEEEcC
Q 021160 174 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP 204 (316)
Q Consensus 174 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p 204 (316)
++|...|+.+|+.+.++.-....|++++|--
T Consensus 233 ~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 233 GTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 9999999999999999988889999999953
No 366
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.2 Score=41.37 Aligned_cols=118 Identities=7% Similarity=0.068 Sum_probs=71.6
Q ss_pred ccEEEEEEccCCCeEEEecC------------CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 93 IHITGLAYSNTSELLISYND------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 93 ~~i~~~~~~~~~~~l~s~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
...+.+...|+|.+.++... |.|+.+|. .+ ...+.+..+-.. .+.++|
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g----------------~~~~l~~~~~~~--~NGla~- 170 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG----------------GVVRLLDDDLTI--PNGLAF- 170 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC----------------CEEEeecCcEEe--cCceEE-
Confidence 34567788899987777422 22333333 22 234444443322 678999
Q ss_pred cCCCcEEEEec-cCCeEEEEeccC--C----ee-EEEeecCccceEEEEEcCCCCeEEEEeCCC-cEEEecCCCCCCCC
Q 021160 161 GPNDEYVMSGS-DCGHLFIWKKKG--G----KL-VRLMVGDRHVVNQLEPHPHIPMFATCGIEK-TVKLWAPMPTDFPP 230 (316)
Q Consensus 161 ~~~~~~l~~~~-~dg~v~~wd~~~--~----~~-~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~-~i~iwd~~~~~~~~ 230 (316)
+|+++.++.+. ..+.|+-|++.. + +. ...+....+..-.++...+|.+.+++...| .|.+|+.....+..
T Consensus 171 SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~ 249 (307)
T COG3386 171 SPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGE 249 (307)
T ss_pred CCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEE
Confidence 99997776664 458888887752 1 11 122223345666788888888875554444 89999998444433
No 367
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.86 E-value=0.005 Score=34.71 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=28.5
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCc
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR 65 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~ 65 (316)
...|.+++|+|.. .++|.|+.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTM-DLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCC-CEEEEEECCCeEEEEECC
Confidence 5579999999999 899999999999999994
No 368
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.75 E-value=0.16 Score=45.91 Aligned_cols=219 Identities=14% Similarity=0.094 Sum_probs=107.7
Q ss_pred cEEEEEecC------CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecC------Cc
Q 021160 48 NYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND------EL 114 (316)
Q Consensus 48 ~~l~~g~~d------g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d------~~ 114 (316)
.+++.|+.+ ..+..||..++++......+ ....-.+++.. ++.+++. |.| .+
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~--------------~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ 350 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP--------------SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSS 350 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCC--------------cccccccEEEE-CCEEEEEccccCCCcccce
Confidence 678888876 35788888877643221100 11222334443 3454444 556 34
Q ss_pred EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCe-----EEEEeccCCee--E
Q 021160 115 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-----LFIWKKKGGKL--V 187 (316)
Q Consensus 115 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-----v~~wd~~~~~~--~ 187 (316)
+..||..... +..+..+...... . .++ .-+|...++|+.||. +-.||..+.+- +
T Consensus 351 ve~YD~~~~~--------------W~~~a~M~~~R~~--~-~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 351 VERYDPRTNQ--------------WTPVAPMNTKRSD--F-GVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred EEEecCCCCc--------------eeccCCccCcccc--c-eeE--EECCEEEEEeccccccccccEEEecCCCCccccc
Confidence 6777876651 1111122222211 2 222 236788888988874 66777765442 2
Q ss_pred EEeecCccceEEEEEcCCCCeEEEEeCCC------cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCCe--
Q 021160 188 RLMVGDRHVVNQLEPHPHIPMFATCGIEK------TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVI-- 259 (316)
Q Consensus 188 ~~~~~~~~~v~~~~~~p~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~-- 259 (316)
..+.......-.+. -++.+.+.||.++ ++..||+.+.+...++.-..+-.......-++.+.+.|+.|+.
T Consensus 412 a~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~ 489 (571)
T KOG4441|consen 412 APMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSA 489 (571)
T ss_pred CCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCc
Confidence 22222122222222 2677778887554 5788999888744433222111111112235567777777752
Q ss_pred ---EEEEEecccCcceeEEeecccccccccCCCCeEEEEeccCCCC
Q 021160 260 ---MHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDA 302 (316)
Q Consensus 260 ---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 302 (316)
+..+|..+.+=..................++.+|+++-.++..
T Consensus 490 ~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 490 LSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNN 535 (571)
T ss_pred cceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCcc
Confidence 4445544432111111222222222234455688887755543
No 369
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.0053 Score=56.93 Aligned_cols=100 Identities=10% Similarity=0.102 Sum_probs=70.0
Q ss_pred CCcEEEEeccCCeEEEEeccCCeeE--EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccce
Q 021160 163 NDEYVMSGSDCGHLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM 239 (316)
Q Consensus 163 ~~~~l~~~~~dg~v~~wd~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~ 239 (316)
.+..++.|+..|.+...|+... +- ..-..-.++|++++|+.+|..++.|-.+|.|.+||...++ ++.+..+..+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 4668999999999999988642 21 1112234799999999999999999999999999999876 555555554443
Q ss_pred eeee--cCCCCceeEEecCCCeEEEEEe
Q 021160 240 KANK--QGREDHSRITLTPDVIMHVLRL 265 (316)
Q Consensus 240 ~~~~--~~~~~~~~~s~~~d~~~~~w~~ 265 (316)
.... +..++..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 3222 2334446777777774 6654
No 370
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.62 E-value=0.26 Score=44.67 Aligned_cols=207 Identities=11% Similarity=0.087 Sum_probs=102.8
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecC------CcEEEEeCcCCcccCCCCCCC
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD------EYARVYDIRKCHWYSPISSDT 77 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~d------g~v~~wd~~~~~~~~~~~~~~ 77 (316)
.|..+|..++......... ++..-.+++... + .++++|+.| ..+..||..+.++.....
T Consensus 302 ~ve~yd~~~~~w~~~a~m~----------~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~--- 366 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMP----------SPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAP--- 366 (571)
T ss_pred eeEEecCCcCcEeecCCCC----------cccccccEEEEC-C-EEEEEccccCCCcccceEEEecCCCCceeccCC---
Confidence 4556666665433332222 122334555554 4 688999988 357778888777543210
Q ss_pred CceecccccccCCCcccEEEEEEccCCCeEEE-ecCCc-----EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCC
Q 021160 78 PVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDEL-----VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS 151 (316)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (316)
... ..+...+.. -+|.+.+. |.||. +-.||..+. ...........
T Consensus 367 -------M~~-~R~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~-----------------~W~~va~m~~~ 417 (571)
T KOG4441|consen 367 -------MNT-KRSDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTN-----------------KWTPVAPMLTR 417 (571)
T ss_pred -------ccC-ccccceeEE----ECCEEEEEeccccccccccEEEecCCCC-----------------cccccCCCCcc
Confidence 000 111111111 24555555 45643 677777654 11111111111
Q ss_pred ceeeeEEEecCCCcEEEEeccCC------eEEEEeccCCee--EEEeecCccceEEEEEcCCCCeEEEEeCCC-----cE
Q 021160 152 QTVKGVNFFGPNDEYVMSGSDCG------HLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCGIEK-----TV 218 (316)
Q Consensus 152 ~~i~~~~~~~~~~~~l~~~~~dg------~v~~wd~~~~~~--~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~-----~i 218 (316)
..-..++ .-+|.+.++|+.++ .+..||..+.+- +..+........ ++. -++.+.+.||.|+ +|
T Consensus 418 r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~V 493 (571)
T KOG4441|consen 418 RSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSV 493 (571)
T ss_pred eeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceE
Confidence 1111222 33677778887544 577888876643 233322222222 222 2567788888776 37
Q ss_pred EEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCCC
Q 021160 219 KLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDV 258 (316)
Q Consensus 219 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~ 258 (316)
..||+.+.+...+..-..+.........++...+.++.|+
T Consensus 494 E~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 494 ERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDG 533 (571)
T ss_pred EEEcCCCCceeEcccCccccccccEEEECCEEEEEecccC
Confidence 8899988874443221111111111223556777777664
No 371
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.61 E-value=0.41 Score=41.51 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=27.0
Q ss_pred ccEEEEEEccCCCeEEEecCCcEEEEEcCCC
Q 021160 93 IHITGLAYSNTSELLISYNDELVYLFEKNMG 123 (316)
Q Consensus 93 ~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~ 123 (316)
+.+.++.|+.+.++++...||.+++||+...
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence 7899999999877888889999999998644
No 372
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.023 Score=48.86 Aligned_cols=71 Identities=11% Similarity=0.178 Sum_probs=57.6
Q ss_pred cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCc
Q 021160 35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL 114 (316)
Q Consensus 35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~ 114 (316)
....|.+-..+| ++++|+.+|.||+||- .+. ..++.+.+-..+|..+..+.+|+++++..+..
T Consensus 431 ~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~--------------~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ty 493 (644)
T KOG2395|consen 431 NNFSCFATTESG--YIVVGSLKGDIRLYDR-IGR--------------RAKTALPGLGDAIKHVDVTADGKWILATCKTY 493 (644)
T ss_pred cccceeeecCCc--eEEEeecCCcEEeehh-hhh--------------hhhhcccccCCceeeEEeeccCcEEEEecccE
Confidence 345677766665 8999999999999997 554 45566677889999999999999888888888
Q ss_pred EEEEEcCC
Q 021160 115 VYLFEKNM 122 (316)
Q Consensus 115 i~iwd~~~ 122 (316)
+.+.++.-
T Consensus 494 LlLi~t~~ 501 (644)
T KOG2395|consen 494 LLLIDTLI 501 (644)
T ss_pred EEEEEEec
Confidence 88888754
No 373
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.56 E-value=0.52 Score=42.03 Aligned_cols=194 Identities=11% Similarity=0.099 Sum_probs=102.5
Q ss_pred cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccE--EEEEEccCCCeEEEecCCcEEEEEcCCCCC
Q 021160 48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI--TGLAYSNTSELLISYNDELVYLFEKNMGLG 125 (316)
Q Consensus 48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~ 125 (316)
..++.++.++.|.-.|..+++.........+.. .....+ ..+.....+.+++...++.|+-+|.+++
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~---------~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG-- 130 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPAD---------RGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETG-- 130 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCcc---------ccccccccCCcEEccCCeEEEecCCCeEEEEECCCC--
Confidence 356677788999999999987543321111100 000000 0112221255666667999999999888
Q ss_pred CCCccCCccccccCCCcceeeCCcCC--c-ee-eeEEEecCCCcEEEEec---------cCCeEEEEeccCCeeEEEeec
Q 021160 126 PSPLSLSPEDLQKREEPQVYSGHRNS--Q-TV-KGVNFFGPNDEYVMSGS---------DCGHLFIWKKKGGKLVRLMVG 192 (316)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~i-~~~~~~~~~~~~l~~~~---------~dg~v~~wd~~~~~~~~~~~~ 192 (316)
+.+-.+...... . .+ .+..+ . +..++.++ .++.+.-+|..+|+.+-.+..
T Consensus 131 --------------~~~W~~~~~~~~~~~~~i~ssP~v-~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 131 --------------KQVWKFGNNDQVPPGYTMTGAPTI-V--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred --------------CEeeeecCCCCcCcceEecCCCEE-E--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 444443322110 0 01 11122 1 23444543 367899999999998776643
Q ss_pred Ccc--------------------ce-EEEEEcCCCCeEEEEeCCC------------------cEEEecCCCCCC---CC
Q 021160 193 DRH--------------------VV-NQLEPHPHIPMFATCGIEK------------------TVKLWAPMPTDF---PP 230 (316)
Q Consensus 193 ~~~--------------------~v-~~~~~~p~~~~l~s~~~d~------------------~i~iwd~~~~~~---~~ 230 (316)
... .+ ...++.+.+..++.++.++ .|.-.|..+++. ..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 194 TEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred cCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 211 01 1234455555666665454 688888887761 11
Q ss_pred CCCCc--------ccceeeeecCCCC---ceeEEecCCCeEEEEEecccCc
Q 021160 231 LPDNA--------EKIMKANKQGRED---HSRITLTPDVIMHVLRLQRRQT 270 (316)
Q Consensus 231 ~~~~~--------~~~~~~~~~~~~~---~~~~s~~~d~~~~~w~~~~~~~ 270 (316)
...+. .+++... ...++ ..++.++.+|.+..+|..+++.
T Consensus 274 ~~~~~~~~~~~~s~p~~~~~-~~~~g~~~~~V~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 274 TTPHDLWDYDGPNQPSLADI-KPKDGKPVPAIVHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred CCCCCCcccccCCCCeEEec-cccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence 11111 1111110 01122 2567788899999999888744
No 374
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.50 E-value=0.35 Score=39.35 Aligned_cols=159 Identities=16% Similarity=0.093 Sum_probs=88.4
Q ss_pred cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCC
Q 021160 48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 127 (316)
Q Consensus 48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~ 127 (316)
+.|+.|+.+| +.+++..... ....+ .+...|..+...++-+.++.-.|+.++++++.......
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~--------------~~~~i--~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPS--------------KPTRI--LKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVS 70 (275)
T ss_pred CEEEEEECCC-EEEEEecCCc--------------cceeE--eecceEEEEEEecccCEEEEEcCCccEEEEchhhcccc
Confidence 7888998888 8999983221 11111 12234999999998887777678999999997652111
Q ss_pred CccCCccccccCCCcceeeCCcCCceeeeEE-EecCCCcEEEEeccCCeEEEEeccCC-----eeEEEeecCccceEEEE
Q 021160 128 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVN-FFGPNDEYVMSGSDCGHLFIWKKKGG-----KLVRLMVGDRHVVNQLE 201 (316)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~l~~~~~dg~v~~wd~~~~-----~~~~~~~~~~~~v~~~~ 201 (316)
... .....+.......+. .. +.+..++ -....+...++......|.+|..... +....+.. ...+.+++
T Consensus 71 ~~~-~~~~~~~~~~~~~~~-~~--~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~ 145 (275)
T PF00780_consen 71 TSA-PLAFPKSRSLPTKLP-ET--KGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIA 145 (275)
T ss_pred ccc-ccccccccccccccc-cc--CCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEE
Confidence 000 000000000000111 11 1133333 11234444445555668998887653 34455543 36788999
Q ss_pred EcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 021160 202 PHPHIPMFATCGIEKTVKLWAPMPTDFPPL 231 (316)
Q Consensus 202 ~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~ 231 (316)
|. ++.++.|. .....+.|+.++....+
T Consensus 146 ~~--~~~i~v~~-~~~f~~idl~~~~~~~l 172 (275)
T PF00780_consen 146 FL--GNKICVGT-SKGFYLIDLNTGSPSEL 172 (275)
T ss_pred Ee--CCEEEEEe-CCceEEEecCCCCceEE
Confidence 98 44666665 44578889886654433
No 375
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.47 E-value=0.4 Score=39.69 Aligned_cols=159 Identities=10% Similarity=0.076 Sum_probs=87.0
Q ss_pred CCCCCcEEEEEecCCcEEEEeCc-CCcccCCCCCCCCceecccccccCCCcccE-EEEEEccCC-CeEEEecCCcEEEEE
Q 021160 43 DPRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHI-TGLAYSNTS-ELLISYNDELVYLFE 119 (316)
Q Consensus 43 ~~~~~~~l~~g~~dg~v~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~-~~l~s~~d~~i~iwd 119 (316)
-|.++.-|.+-+.||.+.-..+. .++.. . ....+.....+++ ..-++...+ .++..+.+|.|+-.|
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~---------~--~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~d 211 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKEA---------Q--KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSAD 211 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSEE---------E--EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEE
T ss_pred EecCCCceEEEecCCceEEEEECCCCCEe---------E--eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEe
Confidence 35444668888899999999887 34421 0 0111112222222 233444443 465567788888888
Q ss_pred cCCCCCCCCccCCccccccCCCcceeeCCc------C--CceeeeEEEecCCCcEEEEec--cCC-------eEEEEecc
Q 021160 120 KNMGLGPSPLSLSPEDLQKREEPQVYSGHR------N--SQTVKGVNFFGPNDEYVMSGS--DCG-------HLFIWKKK 182 (316)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~i~~~~~~~~~~~~l~~~~--~dg-------~v~~wd~~ 182 (316)
+..... +....+.-.. . +....-++++.+.+.+.+.-. .++ .|.++|+.
T Consensus 212 lsg~~~--------------~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 212 LSGDSA--------------KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp ETTSSE--------------EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred ccCCcc--------------cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 866410 0111111000 0 001233556333344333221 111 48999999
Q ss_pred CCeeEEEeecCccceEEEEEcCCCC-eEEEE-eCCCcEEEecCCCCC
Q 021160 183 GGKLVRLMVGDRHVVNQLEPHPHIP-MFATC-GIEKTVKLWAPMPTD 227 (316)
Q Consensus 183 ~~~~~~~~~~~~~~v~~~~~~p~~~-~l~s~-~~d~~i~iwd~~~~~ 227 (316)
+++.+.++.. ...+.+|+.+.+.+ .|.+. ..++.+.+||..+++
T Consensus 278 t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 278 THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 9999999874 24677899998765 55544 467899999999887
No 376
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.30 E-value=0.63 Score=40.15 Aligned_cols=162 Identities=14% Similarity=0.152 Sum_probs=93.4
Q ss_pred CCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc---C--CCeEEEecCCcEEE
Q 021160 43 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN---T--SELLISYNDELVYL 117 (316)
Q Consensus 43 ~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~--~~~l~s~~d~~i~i 117 (316)
++++...|++|+..|.++||+....... +-..+.. ..-..+|..++.-+ . ...||.---..+.+
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~-------~~~lllE----~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~v 101 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQ-------PEDLLLE----TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSV 101 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCC-------CccEEEE----EecCCcEEEEEeccccCCCCcceEEEecCCEEEE
Confidence 4555579999999999999999654311 1111111 12245777776543 1 23555556788888
Q ss_pred EEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE---ecCC-CcEEEEeccCCeEEEEeccCCeeEEEeecC
Q 021160 118 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF---FGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 193 (316)
Q Consensus 118 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~-~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~ 193 (316)
|.+....+..... .. ..+..+..|.-......+++ -... ..+|..-+.||.+.+|+-+.-.....++.
T Consensus 102 Y~v~~~~g~~~~g-~~------~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 102 YSVSLVDGTVEHG-NQ------YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred EEEEecCCCcccC-cE------EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 8884331110000 00 11122222332222334433 1112 46788889999999999875554444443
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160 194 RHVVNQLEPHPHIPMFATCGIEKTVKLWAP 223 (316)
Q Consensus 194 ~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~ 223 (316)
---.-.+++.|....|++++.+..+.-|..
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 222334778888888999988888888864
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.30 E-value=0.17 Score=45.84 Aligned_cols=146 Identities=14% Similarity=0.028 Sum_probs=78.2
Q ss_pred ccEEEEEEccCCCeEEEec-------CC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC
Q 021160 93 IHITGLAYSNTSELLISYN-------DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 163 (316)
Q Consensus 93 ~~i~~~~~~~~~~~l~s~~-------d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 163 (316)
..+...+++|+|+.++... |. .|.+++.... ......+. ....-.| +|+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-----------------~~~lt~g~----~~t~PsW-spD 407 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-----------------AVQVLEGH----SLTRPSW-SLD 407 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-----------------ceeeecCC----CCCCceE-CCC
Confidence 4678899999998665522 43 3444454221 22222222 2667777 899
Q ss_pred CcEEEEeccC------------CeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEE---ecCCCCC-
Q 021160 164 DEYVMSGSDC------------GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL---WAPMPTD- 227 (316)
Q Consensus 164 ~~~l~~~~~d------------g~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~i---wd~~~~~- 227 (316)
|..+++.... +.+.+.++..++... ...+.|..+.|||||..++... ++.|.+ -....+.
T Consensus 408 G~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~ 483 (591)
T PRK13616 408 ADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQY 483 (591)
T ss_pred CCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCce
Confidence 8877776543 222222333332221 2245799999999999877665 577776 3333333
Q ss_pred -C---CCCCCCc-ccceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160 228 -F---PPLPDNA-EKIMKANKQGREDHSRITLTPDVIMHVLRLQ 266 (316)
Q Consensus 228 -~---~~~~~~~-~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~ 266 (316)
+ ..+.... ..+.... |..++.+++ +..++.-.+|.+.
T Consensus 484 ~l~~~~~l~~~l~~~~~~l~-W~~~~~L~V-~~~~~~~~v~~v~ 525 (591)
T PRK13616 484 ALTNPREVGPGLGDTAVSLD-WRTGDSLVV-GRSDPEHPVWYVN 525 (591)
T ss_pred eecccEEeecccCCccccce-EecCCEEEE-EecCCCCceEEEe
Confidence 1 1122112 2233444 666666543 3444444456544
No 378
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.17 E-value=0.0092 Score=45.64 Aligned_cols=105 Identities=8% Similarity=0.060 Sum_probs=58.8
Q ss_pred CCCcEEEEeccCCeEEEEeccC-CeeEEEeecCccceEEE-EEcCCCCeEEEEeCCCcEEEecCCCCCCCCCC-CCc-cc
Q 021160 162 PNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQL-EPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP-DNA-EK 237 (316)
Q Consensus 162 ~~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~-~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~-~~ 237 (316)
..+..+++|+.+|.|++|.... +........-...|.++ .--.++.+..+++.|+.||.|++...+..-.. .|. .+
T Consensus 68 ~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 68 TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence 3467899999999999998762 22111111122233332 22234457788899999999999877633222 233 12
Q ss_pred ceeeeecCCCCceeEEe--cCCCeEEEEEecc
Q 021160 238 IMKANKQGREDHSRITL--TPDVIMHVLRLQR 267 (316)
Q Consensus 238 ~~~~~~~~~~~~~~~s~--~~d~~~~~w~~~~ 267 (316)
..... ....++.+... |.|..++.|++..
T Consensus 148 ~e~~i-vv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 148 GEELI-VVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cceeE-EecCCceEEeeccccchhhhhcchhh
Confidence 21122 22233344444 5666666776653
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.09 E-value=0.56 Score=37.61 Aligned_cols=205 Identities=14% Similarity=0.110 Sum_probs=116.4
Q ss_pred ceEEEEECCCCCcEEEEEecCCc-EEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c--
Q 021160 36 RLNAIVIDPRNPNYFAVGGSDEY-ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-- 111 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g~~dg~-v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~-- 111 (316)
.-..++|+|..+.-++.+-.-|+ ..++|....+....+ ....-++. -+ .=.|+|+|.+|..+ +
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~------~s~~~RHf-yG------HGvfs~dG~~LYATEndf 135 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL------VSQEGRHF-YG------HGVFSPDGRLLYATENDF 135 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE------ecccCcee-ec------ccccCCCCcEEEeecCCC
Confidence 34567888877666666665555 456887766521110 00011111 12 23589999977764 3
Q ss_pred ---CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc----------------
Q 021160 112 ---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---------------- 172 (316)
Q Consensus 112 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------------- 172 (316)
-|.|-+||.+.+. ..+-.+..|.-. ...+.+ .+||+.++.+..
T Consensus 136 d~~rGViGvYd~r~~f---------------qrvgE~~t~GiG--pHev~l-m~DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 136 DPNRGVIGVYDAREGF---------------QRVGEFSTHGIG--PHEVTL-MADGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred CCCCceEEEEeccccc---------------ceecccccCCcC--cceeEE-ecCCcEEEEeCCceecccccCccccchh
Confidence 3568999998663 455667777654 677888 899999887643
Q ss_pred --CCeEEEEeccCCeeEEE--ee--cCccceEEEEEcCCCCeEEEEeCCCcE-----EEecCCCCC-CCCCCCC------
Q 021160 173 --CGHLFIWKKKGGKLVRL--MV--GDRHVVNQLEPHPHIPMFATCGIEKTV-----KLWAPMPTD-FPPLPDN------ 234 (316)
Q Consensus 173 --dg~v~~wd~~~~~~~~~--~~--~~~~~v~~~~~~p~~~~l~s~~~d~~i-----~iwd~~~~~-~~~~~~~------ 234 (316)
.-.+.+.|..+|+++.. ++ .+.-.|..++.-+++..++.+-..|-- -+=-...++ +..+.-.
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~ 277 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA 277 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence 11244555556665543 22 344567888888888776655433311 010111122 2222211
Q ss_pred -cccceeeeecCCCCceeEEecCCCeEEEEEecccCcc
Q 021160 235 -AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 235 -~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~ 271 (316)
...+-.++....++...++....+..-+||..++...
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv 315 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVV 315 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEE
Confidence 1222233433345556677777888999999887543
No 380
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.01 E-value=0.35 Score=39.79 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=78.1
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 113 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 113 (316)
.+.+..+.-++++ .+++++..-..+.-||.-...+ .+.. ......|..+.|.|++.+.+.+..+
T Consensus 144 ~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w-------------~~~~--r~~~~riq~~gf~~~~~lw~~~~Gg 207 (302)
T PF14870_consen 144 SGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTW-------------QPHN--RNSSRRIQSMGFSPDGNLWMLARGG 207 (302)
T ss_dssp ---EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS--------------EEEE----SSS-EEEEEE-TTS-EEEEETTT
T ss_pred cceeEeEEECCCC-cEEEEECcccEEEEecCCCccc-------------eEEc--cCccceehhceecCCCCEEEEeCCc
Confidence 4568888889998 7888876655555677543221 1111 2235789999999999877777888
Q ss_pred cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec-
Q 021160 114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG- 192 (316)
Q Consensus 114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~- 192 (316)
.|+.=+.... ..+... .........-.+.+++| .+++...++|+ .|.+ +.....|+.-...+.
T Consensus 208 ~~~~s~~~~~------------~~~w~~-~~~~~~~~~~~~ld~a~-~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~ 271 (302)
T PF14870_consen 208 QIQFSDDPDD------------GETWSE-PIIPIKTNGYGILDLAY-RPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVG 271 (302)
T ss_dssp EEEEEE-TTE------------EEEE----B-TTSS--S-EEEEEE-SSSS-EEEEES-TT-E-EEESSTTSS-EE-GGG
T ss_pred EEEEccCCCC------------cccccc-ccCCcccCceeeEEEEe-cCCCCEEEEeC-CccE-EEeCCCCccceECccc
Confidence 8887762111 000000 00111111122889999 77777777665 4444 455566665444432
Q ss_pred --CccceEEEEEcCCCCeEEEEeCCCcEEEe
Q 021160 193 --DRHVVNQLEPHPHIPMFATCGIEKTVKLW 221 (316)
Q Consensus 193 --~~~~v~~~~~~p~~~~l~s~~~d~~i~iw 221 (316)
-......+.|.+..+-++.| .+|.|--|
T Consensus 272 ~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 272 ENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp TTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred cCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 23457788887665556665 47876544
No 381
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.88 E-value=0.5 Score=40.35 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=37.9
Q ss_pred eeeEEEecCCCcEEEEecc-------------------CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC
Q 021160 154 VKGVNFFGPNDEYVMSGSD-------------------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI 214 (316)
Q Consensus 154 i~~~~~~~~~~~~l~~~~~-------------------dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~ 214 (316)
...+.| .|+|.+.++-+. .|.|.-++..+++......++ .....++|+|+++++++-..
T Consensus 126 ~~~l~~-gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 126 LNSLAW-GPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred ccCceE-CCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccC
Confidence 677888 899876665442 145666666655533222333 34568999999988776553
Q ss_pred C
Q 021160 215 E 215 (316)
Q Consensus 215 d 215 (316)
+
T Consensus 204 ~ 204 (367)
T TIGR02604 204 D 204 (367)
T ss_pred C
Confidence 3
No 382
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.88 E-value=0.41 Score=37.18 Aligned_cols=108 Identities=11% Similarity=0.110 Sum_probs=66.5
Q ss_pred EEEEECCCCCcEEEEEecCCcEEEEe--CcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCc
Q 021160 38 NAIVIDPRNPNYFAVGGSDEYARVYD--IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL 114 (316)
Q Consensus 38 ~~~~~~~~~~~~l~~g~~dg~v~~wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~ 114 (316)
+.++|+.+...+.++-+.+-.|.-|| ..++.+.+. ..+..+..... ..+. .--.++...+|++.++. +.++
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr----~~i~dlrk~~~-~e~~-~PDGm~ID~eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR----KVIFDLRKSQP-FESL-EPDGMTIDTEGNLYVATFNGGT 234 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCc----ceeEEeccCCC-cCCC-CCCcceEccCCcEEEEEecCcE
Confidence 57889877755666777888887788 666664321 11111111000 0110 11133445577766664 8999
Q ss_pred EEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEE
Q 021160 115 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 169 (316)
Q Consensus 115 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 169 (316)
|...|..++ +.+..+.-.... +++++|-.++-..+++
T Consensus 235 V~~~dp~tG----------------K~L~eiklPt~q--itsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 235 VQKVDPTTG----------------KILLEIKLPTPQ--ITSCCFGGKNLDILYV 271 (310)
T ss_pred EEEECCCCC----------------cEEEEEEcCCCc--eEEEEecCCCccEEEE
Confidence 999999999 788888877765 9999994443344443
No 383
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.84 E-value=0.51 Score=42.76 Aligned_cols=111 Identities=7% Similarity=0.171 Sum_probs=69.9
Q ss_pred EEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE-ecCCCcEEEEecc
Q 021160 95 ITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMSGSD 172 (316)
Q Consensus 95 i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~~~ 172 (316)
..-+.-+.-++..+. .....+.|||.+.+. ......| .....|.++.| +.|+++.+++.+-
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~--------------lE~~~~f---~~~~~I~dLDWtst~d~qsiLaVGf 94 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGV--------------LEYEESF---SEDDPIRDLDWTSTPDGQSILAVGF 94 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcE--------------EEEeeee---cCCCceeeceeeecCCCCEEEEEEc
Confidence 334444445554444 356679999998761 0111122 12234899988 3678999999999
Q ss_pred CCeEEEEecc---------CCeeEEEe--ecCc-cceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 021160 173 CGHLFIWKKK---------GGKLVRLM--VGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPM 224 (316)
Q Consensus 173 dg~v~~wd~~---------~~~~~~~~--~~~~-~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~ 224 (316)
...|.++.-. +-..+..+ ..|+ .+|.+..|.++|..++.++ +.+.|+|-.
T Consensus 95 ~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 95 PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred CcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 9999998742 11223333 3344 5789999999997765554 678888743
No 384
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.82 E-value=1.3 Score=39.54 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=43.1
Q ss_pred cCCCcEEEEeccCC------------------eEEEEeccCCeeEEEeec--Ccc----ceEEEEEc----CCCC---eE
Q 021160 161 GPNDEYVMSGSDCG------------------HLFIWKKKGGKLVRLMVG--DRH----VVNQLEPH----PHIP---MF 209 (316)
Q Consensus 161 ~~~~~~l~~~~~dg------------------~v~~wd~~~~~~~~~~~~--~~~----~v~~~~~~----p~~~---~l 209 (316)
.+.+..++.++.++ .+.-+|..+|+..-.+.. |.. ......+. -++. .+
T Consensus 225 d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V 304 (488)
T cd00216 225 DPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAI 304 (488)
T ss_pred eCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEE
Confidence 44567777777665 799999999998876642 210 00111111 1232 46
Q ss_pred EEEeCCCcEEEecCCCCC
Q 021160 210 ATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 210 ~s~~~d~~i~iwd~~~~~ 227 (316)
+.++.+|.+...|.++++
T Consensus 305 ~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 305 VHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred EEECCCceEEEEECCCCc
Confidence 777889999999998887
No 385
>PHA03098 kelch-like protein; Provisional
Probab=95.69 E-value=0.89 Score=41.09 Aligned_cols=67 Identities=12% Similarity=0.105 Sum_probs=35.8
Q ss_pred CCcEEEEeccC------CeEEEEeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEeCC--------CcEEEecCCCC
Q 021160 163 NDEYVMSGSDC------GHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIE--------KTVKLWAPMPT 226 (316)
Q Consensus 163 ~~~~l~~~~~d------g~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~s~~~d--------~~i~iwd~~~~ 226 (316)
++...+.|+.+ ..+..||+.+.+-.. .++..... .+++. .++.+++.|+.+ ..+.+||+.+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 46666777632 457889987654322 12111111 12222 255666666543 23888999887
Q ss_pred CCCCC
Q 021160 227 DFPPL 231 (316)
Q Consensus 227 ~~~~~ 231 (316)
+...+
T Consensus 467 ~W~~~ 471 (534)
T PHA03098 467 KWTEL 471 (534)
T ss_pred ceeeC
Confidence 74433
No 386
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.67 E-value=0.93 Score=36.86 Aligned_cols=204 Identities=11% Similarity=0.045 Sum_probs=103.5
Q ss_pred ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceeccc--ccccCCCcccEEEEE--EccCC-CeEEEe
Q 021160 36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP--RHLIGKNNIHITGLA--YSNTS-ELLISY 110 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~--~~~~~-~~l~s~ 110 (316)
.|..+...|.- +.+++- .|+.+.++++..-....... +...-.. ..........+...+ -...+ ..|+.+
T Consensus 37 ~I~ql~vl~~~-~~llvL-sd~~l~~~~L~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va 111 (275)
T PF00780_consen 37 SITQLSVLPEL-NLLLVL-SDGQLYVYDLDSLEPVSTSA---PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA 111 (275)
T ss_pred eEEEEEEeccc-CEEEEE-cCCccEEEEchhhccccccc---cccccccccccccccccCCeeEEeeccccccceEEEEE
Confidence 58999999876 444443 35999999998654221100 0000000 000011122344444 11222 366667
Q ss_pred cCCcEEEEEcCCCCCCCCccCCccccccC-CCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEE
Q 021160 111 NDELVYLFEKNMGLGPSPLSLSPEDLQKR-EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 189 (316)
Q Consensus 111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~ 189 (316)
...+|.+|...... ... +..+.+.-. ..+.+++| . ++.++.|..+ ...+.|+.++.....
T Consensus 112 ~kk~i~i~~~~~~~------------~~f~~~~ke~~lp---~~~~~i~~-~--~~~i~v~~~~-~f~~idl~~~~~~~l 172 (275)
T PF00780_consen 112 VKKKILIYEWNDPR------------NSFSKLLKEISLP---DPPSSIAF-L--GNKICVGTSK-GFYLIDLNTGSPSEL 172 (275)
T ss_pred ECCEEEEEEEECCc------------ccccceeEEEEcC---CCcEEEEE-e--CCEEEEEeCC-ceEEEecCCCCceEE
Confidence 77799999886631 000 122333322 33888998 3 6677777654 477899987765443
Q ss_pred eecCc------------cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCC--CCCCCcccceeeeecCCCCceeEEec
Q 021160 190 MVGDR------------HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP--PLPDNAEKIMKANKQGREDHSRITLT 255 (316)
Q Consensus 190 ~~~~~------------~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~ 255 (316)
+.... .++..+.. +++.+|++- |..-..-|..+...+ .+.-. ..+...... ..+++...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~-~~p~~~~~~---~pyli~~~ 245 (275)
T PF00780_consen 173 LDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWS-SAPQSVAYS---SPYLIAFS 245 (275)
T ss_pred eCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcCcccEEEcC-CchhEEEEE---CCEEEEEC
Confidence 32111 12333333 344555443 333344454443322 11111 122233322 34888877
Q ss_pred CCCeEEEEEecccCcc
Q 021160 256 PDVIMHVLRLQRRQTL 271 (316)
Q Consensus 256 ~d~~~~~w~~~~~~~~ 271 (316)
.++ +.++++.+++..
T Consensus 246 ~~~-iEV~~~~~~~lv 260 (275)
T PF00780_consen 246 SNS-IEVRSLETGELV 260 (275)
T ss_pred CCE-EEEEECcCCcEE
Confidence 765 999999988543
No 387
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=1.2 Score=38.19 Aligned_cols=154 Identities=8% Similarity=0.039 Sum_probs=99.4
Q ss_pred cEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec
Q 021160 94 HITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 171 (316)
Q Consensus 94 ~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 171 (316)
.-..++.++.+. .++.. .+..|.+.|.... .......... ....+++ ++++..+..+.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~----------------~~~~~~~vG~---~P~~~~~-~~~~~~vYV~n 134 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN----------------TVLGSIPVGL---GPVGLAV-DPDGKYVYVAN 134 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCccc----------------ceeeEeeecc---CCceEEE-CCCCCEEEEEe
Confidence 345678888887 45553 5799999996654 3333332222 2677888 89998777765
Q ss_pred c---CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeE-EEEeCCCcEEEecCCCCCCCC------CCCCcccceee
Q 021160 172 D---CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFPP------LPDNAEKIMKA 241 (316)
Q Consensus 172 ~---dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~s~~~d~~i~iwd~~~~~~~~------~~~~~~~~~~~ 241 (316)
. ++.+.+.|..+.+.+.....-..+ ..+++.|+++.+ ++-..++.|.+.|.....+.+ ...... ....
T Consensus 135 ~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~-P~~i 212 (381)
T COG3391 135 AGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG-PAGI 212 (381)
T ss_pred cccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCC-CceE
Confidence 5 689999999999988886543334 889999999964 444578999999987766442 211111 2233
Q ss_pred eecCCCCc-eeEEecCC--CeEEEEEecccCc
Q 021160 242 NKQGREDH-SRITLTPD--VIMHVLRLQRRQT 270 (316)
Q Consensus 242 ~~~~~~~~-~~~s~~~d--~~~~~w~~~~~~~ 270 (316)
. +.+++. ..++...+ +.+...|...+..
T Consensus 213 ~-v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 213 A-VDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred E-ECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 3 455554 44444443 5677777665533
No 388
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.61 E-value=1.4 Score=38.39 Aligned_cols=160 Identities=13% Similarity=0.205 Sum_probs=82.2
Q ss_pred ceEEEEECCCCCcEEEEE-ecCC----cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCe-EEE
Q 021160 36 RLNAIVIDPRNPNYFAVG-GSDE----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL-LIS 109 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g-~~dg----~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s 109 (316)
.+...+++|++ +++|.+ +..| .++++|+++++.. ...+ . ......+.|.++++. +.+
T Consensus 125 ~~~~~~~Spdg-~~la~~~s~~G~e~~~l~v~Dl~tg~~l-------------~d~i-~--~~~~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 125 SLGGFSVSPDG-KRLAYSLSDGGSEWYTLRVFDLETGKFL-------------PDGI-E--NPKFSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EEEEEEETTTS-SEEEEEEEETTSSEEEEEEEETTTTEEE-------------EEEE-E--EEESEEEEECTTSSEEEEE
T ss_pred EeeeeeECCCC-CEEEEEecCCCCceEEEEEEECCCCcCc-------------CCcc-c--ccccceEEEeCCCCEEEEE
Confidence 44578899999 666654 4444 4999999998732 1111 1 111223999999884 444
Q ss_pred ecC-----------CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc---C-C
Q 021160 110 YND-----------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---C-G 174 (316)
Q Consensus 110 ~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d-g 174 (316)
..+ ..|+.|.+.+... .-...+...........+.. ++++++++..+. + .
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~--------------~d~lvfe~~~~~~~~~~~~~-s~d~~~l~i~~~~~~~~s 252 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQS--------------EDELVFEEPDEPFWFVSVSR-SKDGRYLFISSSSGTSES 252 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GG--------------G-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEE
T ss_pred EeCcccccccCCCCcEEEEEECCCChH--------------hCeeEEeecCCCcEEEEEEe-cCcccEEEEEEEccccCC
Confidence 321 2377778766510 11133444333211456776 899998876443 2 4
Q ss_pred eEEEEeccCC----eeEEEeecCccceEEEEEcCCCCeEEEEe---CCCcEEEecCCCCC
Q 021160 175 HLFIWKKKGG----KLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTD 227 (316)
Q Consensus 175 ~v~~wd~~~~----~~~~~~~~~~~~v~~~~~~p~~~~l~s~~---~d~~i~iwd~~~~~ 227 (316)
.+++.++..+ .....+..+...+....-+..+.+++... ..+.|...++....
T Consensus 253 ~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 253 EVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred eEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccc
Confidence 5788888764 22333333333333332233444443332 23455555665543
No 389
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.61 E-value=0.91 Score=36.29 Aligned_cols=154 Identities=10% Similarity=0.096 Sum_probs=86.1
Q ss_pred ceEEEEECCCCCcEEEEEecCC--cEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160 36 RLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 113 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g~~dg--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 113 (316)
-...+.|..++ .++-+.+.-| .|+.+|+.+++.......+ ....-..++...+.-+..+=.++
T Consensus 46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~--------------~~~FgEGit~~~d~l~qLTWk~~ 110 (264)
T PF05096_consen 46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLP--------------PRYFGEGITILGDKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-T--------------TT--EEEEEEETTEEEEEESSSS
T ss_pred cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECC--------------ccccceeEEEECCEEEEEEecCC
Confidence 34578886667 6777776555 6889999998743211111 01112233333332233444789
Q ss_pred cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecC
Q 021160 114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 193 (316)
Q Consensus 114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~ 193 (316)
...+||..+. +.+..+.-... =+.++. +++.|+.......++++|..+.+....+...
T Consensus 111 ~~f~yd~~tl----------------~~~~~~~y~~E---GWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 111 TGFVYDPNTL----------------KKIGTFPYPGE---GWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp EEEEEETTTT----------------EEEEEEE-SSS-----EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred eEEEEccccc----------------eEEEEEecCCc---ceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEE
Confidence 9999999876 56666654332 466764 5667777777889999999887776665432
Q ss_pred c-----cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 194 R-----HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 194 ~-----~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
. ..++.+.|. +|...|=.-....|..-|+.++.
T Consensus 169 ~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 169 DNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp ETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B
T ss_pred ECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe
Confidence 1 245667665 45444444444555556666654
No 390
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.49 E-value=1 Score=36.17 Aligned_cols=108 Identities=10% Similarity=0.139 Sum_probs=68.9
Q ss_pred EEEEEEccCCCe-EEEe-cCC-cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec
Q 021160 95 ITGLAYSNTSEL-LISY-NDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 171 (316)
Q Consensus 95 i~~~~~~~~~~~-l~s~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 171 (316)
...++++|.... ++.. .-| ...++|.... ....++....+....-.=.| +|+|.+|+..-
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~----------------~~pv~~~s~~~RHfyGHGvf-s~dG~~LYATE 132 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGA----------------QEPVTLVSQEGRHFYGHGVF-SPDGRLLYATE 132 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCC----------------cCcEEEecccCceeeccccc-CCCCcEEEeec
Confidence 345777887652 2333 334 4678888776 34444433332211222235 99999998754
Q ss_pred c-----CCeEEEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEe
Q 021160 172 D-----CGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 221 (316)
Q Consensus 172 ~-----dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iw 221 (316)
+ .|.|-+||.+.+ +.+..+..|.-....+.|.+||+.++.++ |-|..-
T Consensus 133 ndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIeth 186 (366)
T COG3490 133 NDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETH 186 (366)
T ss_pred CCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--Cceecc
Confidence 3 467899998743 45667788887788899999999988775 444444
No 391
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.39 E-value=0.14 Score=40.10 Aligned_cols=78 Identities=12% Similarity=0.201 Sum_probs=51.7
Q ss_pred ECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccc--cccCCCcccEEEEEEccCCCeEEEecCCcEEEEE
Q 021160 42 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR--HLIGKNNIHITGLAYSNTSELLISYNDELVYLFE 119 (316)
Q Consensus 42 ~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd 119 (316)
+...+ .++++-+.+|.+++||+.+++...... ++..+... .........|..+.++.+|.-+++-++|..+.|+
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~---Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPV---SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCc---cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 33445 789999999999999999887543211 11111000 0000356778999999999877776778899999
Q ss_pred cCCC
Q 021160 120 KNMG 123 (316)
Q Consensus 120 ~~~~ 123 (316)
..-+
T Consensus 94 ~~L~ 97 (219)
T PF07569_consen 94 PDLG 97 (219)
T ss_pred cccc
Confidence 7654
No 392
>PHA02713 hypothetical protein; Provisional
Probab=95.34 E-value=1.5 Score=39.88 Aligned_cols=136 Identities=9% Similarity=0.042 Sum_probs=65.3
Q ss_pred CCcEEEEeccCC-----eEEEEeccCCeeE--EEeecCccceEEEEEcCCCCeEEEEeCCC-------------------
Q 021160 163 NDEYVMSGSDCG-----HLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGIEK------------------- 216 (316)
Q Consensus 163 ~~~~l~~~~~dg-----~v~~wd~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l~s~~~d~------------------- 216 (316)
++...+.|+.++ .+..||+.+.+-. ..++........++. ++++.+.||.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 577777777654 4788998765432 222221111122222 577777777542
Q ss_pred ----cEEEecCCCCCCCCCCCCcccceeeeecCCCCceeEEecCC------CeEEEEEecccCcceeE-Eeecccccccc
Q 021160 217 ----TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD------VIMHVLRLQRRQTLAYR-ERRYNAADFES 285 (316)
Q Consensus 217 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d------~~~~~w~~~~~~~~~~~-~~~~~~~~~~~ 285 (316)
.+..||+.+.+...+..-..+.........++.+.+.|+.+ ..+..+|..+.+..... ...........
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT 508 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence 47789988876333322111111111122345666666643 23456666551122211 11111112222
Q ss_pred cCCCCeEEEEeccCC
Q 021160 286 DEEEGETYLLGFSDS 300 (316)
Q Consensus 286 ~~~~~~v~~~~~~~~ 300 (316)
..-+|+||+++--++
T Consensus 509 ~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 509 ILHDNTIMMLHCYES 523 (557)
T ss_pred EEECCEEEEEeeecc
Confidence 234566999875444
No 393
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.22 E-value=0.042 Score=50.46 Aligned_cols=186 Identities=11% Similarity=0.075 Sum_probs=93.9
Q ss_pred ceeeEEEEeeC--CCcceEEEeccccccccCCCCccceEEEEECC---CCCcEEEEEecCCcEEEEeCcCCcccCCCCCC
Q 021160 2 VLFNMLFDLRS--DSATRLFYCSSFSENSKQPMNSIRLNAIVIDP---RNPNYFAVGGSDEYARVYDIRKCHWYSPISSD 76 (316)
Q Consensus 2 ~g~v~vwd~~~--~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~---~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~ 76 (316)
+|.+.|||+.. ++..+-+..+-... -...+.-+.|.| .. .++..+-.++.+++.+..+...
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p------~gs~~~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra~~------- 217 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITP------YGSDPQLVSWCPIAVNK-VYICYGLKGGEIRLLNINRALR------- 217 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCc------CCCCcceeeeccccccc-ceeeeccCCCceeEeeechHHH-------
Confidence 57788999863 22222222211111 122334555554 44 6788888999999988765431
Q ss_pred CCceecccccccCCCcccEEEEE-----------EccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcce
Q 021160 77 TPVDTFCPRHLIGKNNIHITGLA-----------YSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV 144 (316)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (316)
.++.+|...+..++ .+|||+.++. +.||.+..|.+.-..... ..+...
T Consensus 218 ---------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~-----------~rclhe 277 (1283)
T KOG1916|consen 218 ---------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIV-----------HRCLHE 277 (1283)
T ss_pred ---------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecccc-----------Hhhhhc
Confidence 11133444333332 6888887776 578887777653221111 123344
Q ss_pred eeCCcCCceeeeEEEec--------CCCcEEEEec-cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCC--------
Q 021160 145 YSGHRNSQTVKGVNFFG--------PNDEYVMSGS-DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP-------- 207 (316)
Q Consensus 145 ~~~~~~~~~i~~~~~~~--------~~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~-------- 207 (316)
.+.|.....+..+ |+. +.-.++++++ .+..+++|.-...+|+.. -....|..+. -+++.
T Consensus 278 wkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~--~~~d~v~iV~-p~~~~v~~~~~~~ 353 (1283)
T KOG1916|consen 278 WKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLD--KLIDGVQIVG-PHDGEVTDLSMCQ 353 (1283)
T ss_pred cCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhhhh--hcccceEeec-CCCccccchhhhH
Confidence 4444432222222 211 0112444444 466789998776666511 1122333333 22222
Q ss_pred ----eEEEEeCCCcEEEecCCC
Q 021160 208 ----MFATCGIEKTVKLWAPMP 225 (316)
Q Consensus 208 ----~l~s~~~d~~i~iwd~~~ 225 (316)
.+++-+.++.|.+|--+.
T Consensus 354 ~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 354 WMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred HHHHHHHHhhhHHHHHHhhcch
Confidence 134566788999996544
No 394
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.21 E-value=0.098 Score=28.62 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=26.6
Q ss_pred cceEEEEECCCCC--cEEEEEecCCcEEEEeCcC
Q 021160 35 IRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRK 66 (316)
Q Consensus 35 ~~v~~~~~~~~~~--~~l~~g~~dg~v~~wd~~~ 66 (316)
+.|.++.|+|... .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999998664 5888888889999999995
No 395
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.16 E-value=1.4 Score=35.65 Aligned_cols=170 Identities=11% Similarity=0.098 Sum_probs=96.3
Q ss_pred CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-c
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 111 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 111 (316)
-...|+++.|+|+. +.|++......-.|+=...|+++..+ ... + -.....++|...|++.++- .
T Consensus 84 ~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~Gdlirti---------PL~----g-~~DpE~Ieyig~n~fvi~dER 148 (316)
T COG3204 84 ETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTI---------PLT----G-FSDPETIEYIGGNQFVIVDER 148 (316)
T ss_pred ccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEe---------ccc----c-cCChhHeEEecCCEEEEEehh
Confidence 34569999999998 55555555555556655567644322 111 1 1223467777777777775 5
Q ss_pred CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee-E--E
Q 021160 112 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-V--R 188 (316)
Q Consensus 112 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~-~--~ 188 (316)
+..++++.++....... .... . -++.... +.+ +....++| +|....+..+=+..-+.||....+.. + .
T Consensus 149 ~~~l~~~~vd~~t~~~~----~~~~-~-i~L~~~~-k~N-~GfEGlA~-d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~ 219 (316)
T COG3204 149 DRALYLFTVDADTTVIS----AKVQ-K-IPLGTTN-KKN-KGFEGLAW-DPVDHRLFVAKERNPIGIFEVTQSPSSLSVH 219 (316)
T ss_pred cceEEEEEEcCCccEEe----ccce-E-EeccccC-CCC-cCceeeec-CCCCceEEEEEccCCcEEEEEecCCcccccc
Confidence 88888888765421000 0000 0 0111111 111 34788999 88888888888877777777653321 1 1
Q ss_pred EeecC-------ccceEEEEEcCCC-CeEEEEeCCCcEEEecCCCC
Q 021160 189 LMVGD-------RHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPT 226 (316)
Q Consensus 189 ~~~~~-------~~~v~~~~~~p~~-~~l~s~~~d~~i~iwd~~~~ 226 (316)
....+ -..|.++.|++.. ..++.+.+++.+--.|....
T Consensus 220 ~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 220 ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 11111 1246677787644 44666666777666666554
No 396
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.06 E-value=1.4 Score=39.23 Aligned_cols=123 Identities=7% Similarity=0.030 Sum_probs=72.8
Q ss_pred cccEEEEEEccCC-----CeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc-C--CceeeeEEEecCC
Q 021160 92 NIHITGLAYSNTS-----ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-N--SQTVKGVNFFGPN 163 (316)
Q Consensus 92 ~~~i~~~~~~~~~-----~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~i~~~~~~~~~ 163 (316)
-..|..+.|.|-+ .+||.--.+.|.+|.+-..... +.+.+.....+- . +.-...+.| +|.
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e-----------~~K~l~sQtcEi~e~~pvLpQGCVW-HPk 123 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTE-----------RNKLLMSQTCEIREPFPVLPQGCVW-HPK 123 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccc-----------cccceeeeeeeccCCcccCCCcccc-cCC
Confidence 3568899999964 2666677889999998632100 001111111110 0 000123456 888
Q ss_pred CcEEEEeccCCeEEEEeccC--CeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEecCCCCC
Q 021160 164 DEYVMSGSDCGHLFIWKKKG--GKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD 227 (316)
Q Consensus 164 ~~~l~~~~~dg~v~~wd~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~iwd~~~~~ 227 (316)
...|+.-.....-.+++++. .+....+. -.+.|.|.+|.+||+.|+.+- ..=.-+|||-..+.
T Consensus 124 ~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 124 KAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred CceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhh
Confidence 88887766655555666653 23333343 457899999999999866553 33456899966543
No 397
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.74 E-value=2.6 Score=36.68 Aligned_cols=182 Identities=9% Similarity=0.076 Sum_probs=88.1
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEec----------CCcEEEEeCcCCcccCCC
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS----------DEYARVYDIRKCHWYSPI 73 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~----------dg~v~~wd~~~~~~~~~~ 73 (316)
.|+++|+.+++...-... ...-..++|.+++..++.+... ...|+.|.+.+....
T Consensus 151 ~l~v~Dl~tg~~l~d~i~------------~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~--- 215 (414)
T PF02897_consen 151 TLRVFDLETGKFLPDGIE------------NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSE--- 215 (414)
T ss_dssp EEEEEETTTTEEEEEEEE------------EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG---
T ss_pred EEEEEECCCCcCcCCccc------------ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHh---
Confidence 578888887754322111 1112349999998444455432 223677777665410
Q ss_pred CCCCCceecccccccCC-Ccc-cEEEEEEccCCCeEEE-e-c--C-CcEEEEEcCCCCCCCCccCCccccccCCCcceee
Q 021160 74 SSDTPVDTFCPRHLIGK-NNI-HITGLAYSNTSELLIS-Y-N--D-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS 146 (316)
Q Consensus 74 ~~~~~~~~~~~~~~~~~-~~~-~i~~~~~~~~~~~l~s-~-~--d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (316)
...+... ... ....+..++++++++. . . + ..+++.++.... ........+.
T Consensus 216 ----------d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~------------~~~~~~~~l~ 273 (414)
T PF02897_consen 216 ----------DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG------------SPDAKPKLLS 273 (414)
T ss_dssp -----------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT------------TSS-SEEEEE
T ss_pred ----------CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC------------CCcCCcEEEe
Confidence 0111122 122 2667889999995543 2 2 3 458888887630 0002333343
Q ss_pred CCcCCceeeeEEEecCCCcEEEEec---cCCeEEEEeccCCee---EEEeecCcc--ceEEEEEcCCCCe-EEEEeCCC-
Q 021160 147 GHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKKGGKL---VRLMVGDRH--VVNQLEPHPHIPM-FATCGIEK- 216 (316)
Q Consensus 147 ~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~v~~wd~~~~~~---~~~~~~~~~--~v~~~~~~p~~~~-l~s~~~d~- 216 (316)
..... ....+.. . .+.+++... ..+.|...++..... ...+..+.. .+..+.. .+.+ ++.-..++
T Consensus 274 ~~~~~-~~~~v~~-~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~ 348 (414)
T PF02897_consen 274 PREDG-VEYYVDH-H-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGS 348 (414)
T ss_dssp ESSSS--EEEEEE-E-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTE
T ss_pred CCCCc-eEEEEEc-c-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCc
Confidence 33322 1333433 2 333333332 256677777776542 224545554 3444444 4445 44444444
Q ss_pred -cEEEecCC-CCC
Q 021160 217 -TVKLWAPM-PTD 227 (316)
Q Consensus 217 -~i~iwd~~-~~~ 227 (316)
.|+++++. +..
T Consensus 349 ~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 349 SRLRVYDLDDGKE 361 (414)
T ss_dssp EEEEEEETT-TEE
T ss_pred cEEEEEECCCCcE
Confidence 58889988 443
No 398
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=0.7 Score=44.10 Aligned_cols=145 Identities=10% Similarity=-0.045 Sum_probs=82.2
Q ss_pred cccEEEEEEccCCCeEEE--e-cCCcEEEEEcCCCCCCCCccCCccccccCCCcce-eeCCcCCceeeeEEEecCC-CcE
Q 021160 92 NIHITGLAYSNTSELLIS--Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHRNSQTVKGVNFFGPN-DEY 166 (316)
Q Consensus 92 ~~~i~~~~~~~~~~~l~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-~~~ 166 (316)
..++..+...+|+.+.+. + .+..|..||++...... +.+..++.. -..........++.| .|. ...
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~--------~~~~~pl~~s~ts~ek~vf~~~~~w-nP~vp~n 170 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESR--------YETTVPLKNSATSFEKPVFQLKNVW-NPLVPLN 170 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhh--------hhhccccccccchhccccccccccc-cCCccch
Confidence 345667777888774333 3 45678999997642100 000001100 001111112456677 443 334
Q ss_pred EEEeccCCeEEEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCC---CC-cccceee
Q 021160 167 VMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP---DN-AEKIMKA 241 (316)
Q Consensus 167 l~~~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~-~~~~~~~ 241 (316)
.+....|+.|++..+... +.+..++ .....++++|+|.|+.++.|-..|++.-|.........++ .. .-.+..+
T Consensus 171 ~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v 249 (1405)
T KOG3630|consen 171 SAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSV 249 (1405)
T ss_pred hhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEE
Confidence 566677888888876532 2233332 3457899999999999999999999999987665322222 11 2345566
Q ss_pred eecCC
Q 021160 242 NKQGR 246 (316)
Q Consensus 242 ~~~~~ 246 (316)
.|..+
T Consensus 250 ~Wl~t 254 (1405)
T KOG3630|consen 250 TWLST 254 (1405)
T ss_pred EEecc
Confidence 65444
No 399
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.71 E-value=2.5 Score=36.40 Aligned_cols=195 Identities=12% Similarity=0.061 Sum_probs=82.7
Q ss_pred ceeeEEEEeeCCCc-ceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe------cCCcEEEEeCcCCcccCCCC
Q 021160 2 VLFNMLFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG------SDEYARVYDIRKCHWYSPIS 74 (316)
Q Consensus 2 ~g~v~vwd~~~~~~-~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~------~dg~v~~wd~~~~~~~~~~~ 74 (316)
++.|.|+|+.+... .++...-+.++...-.|- ..-..+-.-|+| ..++++- .-|.+.++|-++.++.....
T Consensus 97 SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~-s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We 174 (461)
T PF05694_consen 97 SSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGL-SRPHTVHCLPDG-RIMISALGDADGNGPGGFVLLDGETFEVKGRWE 174 (461)
T ss_dssp T--EEEEE--S-TTS-EEEEEE-HHHHHHHH-E-EEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--
T ss_pred cCcEEEEECCCCCCCCceEeeeCHHHHHhhcCC-CCCceeeecCCc-cEEEEeccCCCCCCCCcEEEEcCccccccceec
Confidence 46789999985443 233333322111110000 112223334667 6777652 23557777777655322111
Q ss_pred CCCCceecccccccCCCcccEEEEEEccCCCeEEEec---------------------CCcEEEEEcCCCCCCCCccCCc
Q 021160 75 SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---------------------DELVYLFEKNMGLGPSPLSLSP 133 (316)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---------------------d~~i~iwd~~~~~~~~~~~~~~ 133 (316)
.+ .+....-..+-|.|..+.++|+. ..++.+||+.+.
T Consensus 175 ~~------------~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r---------- 232 (461)
T PF05694_consen 175 KD------------RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR---------- 232 (461)
T ss_dssp SB-------------TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT----------
T ss_pred cC------------CCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC----------
Confidence 00 11122334566666666555542 245999999888
Q ss_pred cccccCCCcceeeCCcCCceeeeEEE-ecCCCcEEEEe-ccCCeEEEEec-cCCe----eEEEeecC-------------
Q 021160 134 EDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMSG-SDCGHLFIWKK-KGGK----LVRLMVGD------------- 193 (316)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~-~~dg~v~~wd~-~~~~----~~~~~~~~------------- 193 (316)
+.++++.-.........+.| +.|+..+-.++ .....|..|-- ..++ .+-.+...
T Consensus 233 ------~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~ 306 (461)
T PF05694_consen 233 ------KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKP 306 (461)
T ss_dssp ------EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGG
T ss_pred ------cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccc
Confidence 77888775543333556666 24444443333 33555655543 3332 11122110
Q ss_pred ----ccceEEEEEcCCCCeEE-EEeCCCcEEEecCCCC
Q 021160 194 ----RHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPT 226 (316)
Q Consensus 194 ----~~~v~~~~~~p~~~~l~-s~~~d~~i~iwd~~~~ 226 (316)
..-|+.+..|.|.++|. ++-.+|.|+.||+...
T Consensus 307 ~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 307 FGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp G-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 24578999999999965 4558999999999764
No 400
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.69 E-value=1.8 Score=39.45 Aligned_cols=119 Identities=13% Similarity=0.079 Sum_probs=66.4
Q ss_pred eEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEc--cCCC-eEEEecCC
Q 021160 37 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS--NTSE-LLISYNDE 113 (316)
Q Consensus 37 v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~-~l~s~~d~ 113 (316)
..-+.-+..+ +..++-+....+.|||.+.+.+.. ... -...+.|..+.|. |+++ +|+.|-..
T Consensus 32 ~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~-------------~~~-f~~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 32 PSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEY-------------EES-FSEDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred cceEeecccC-cEEEEECCCCEEEEEEcCCcEEEE-------------eee-ecCCCceeeceeeecCCCCEEEEEEcCc
Confidence 3444445544 444445556779999998775311 111 1346788999985 4666 55558889
Q ss_pred cEEEEEcCCCCCCCCccCCccccccCCCccee--eCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEec
Q 021160 114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY--SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 181 (316)
Q Consensus 114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~ 181 (316)
.|.+|.-.... .... .+...+++.+ ..++. .+|.+..| -++|.+++.++ ..+.++|-
T Consensus 97 ~v~l~~Q~R~d--y~~~-----~p~w~~i~~i~i~~~T~-h~Igds~W-l~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 97 HVLLYTQLRYD--YTNK-----GPSWAPIRKIDISSHTP-HPIGDSIW-LKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEEEEEccchh--hhcC-----CcccceeEEEEeecCCC-CCccceeE-ecCCeEEEEeC--CEEEEECC
Confidence 99988653210 0000 1111222322 23331 23888888 78887665443 56778774
No 401
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.59 E-value=2.5 Score=35.88 Aligned_cols=197 Identities=10% Similarity=0.031 Sum_probs=88.9
Q ss_pred EEEECCCCCcEEEEEecCCc--EEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE-ecCCcE
Q 021160 39 AIVIDPRNPNYFAVGGSDEY--ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELV 115 (316)
Q Consensus 39 ~~~~~~~~~~~l~~g~~dg~--v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i 115 (316)
.=+|.++|.++|.++..||. +.+.|+.+++.. ++..+-........++|+++.++- -....|
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~---------------QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l 104 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEIT---------------QLTDGPGDNTFGGFLSPDDRALYYVKNGRSL 104 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE---------------E---SS-B-TTT-EE-TTSSEEEEEETTTEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEE---------------ECccCCCCCccceEEecCCCeEEEEECCCeE
Confidence 44678888666666655554 566677777532 221211121223456787776554 456788
Q ss_pred EEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe-cCCCcEEEEecc----------------------
Q 021160 116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF-GPNDEYVMSGSD---------------------- 172 (316)
Q Consensus 116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~---------------------- 172 (316)
+-.|+++. +....+...... +-...|. +.++..++-.-.
T Consensus 105 ~~vdL~T~----------------e~~~vy~~p~~~--~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p 166 (386)
T PF14583_consen 105 RRVDLDTL----------------EERVVYEVPDDW--KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARP 166 (386)
T ss_dssp EEEETTT------------------EEEEEE--TTE--EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred EEEECCcC----------------cEEEEEECCccc--ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence 88898886 443444444432 3233331 344554432211
Q ss_pred CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC----c-EEEecCCC--CCCCCCCCC-cccceeeeec
Q 021160 173 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK----T-VKLWAPMP--TDFPPLPDN-AEKIMKANKQ 244 (316)
Q Consensus 173 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~----~-i~iwd~~~--~~~~~~~~~-~~~~~~~~~~ 244 (316)
...|.-.|+.+|+....+. -...+..+.|+|..+.+++=+..| . -|||-++. .....+..+ ...+..-.+|
T Consensus 167 ~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw 245 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFW 245 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE
T ss_pred CceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccc
Confidence 1236666777777554444 346778899999887765554333 2 36775543 222222222 2345566677
Q ss_pred CCCCceeEE--e---cCCCeEEEEEecccC
Q 021160 245 GREDHSRIT--L---TPDVIMHVLRLQRRQ 269 (316)
Q Consensus 245 ~~~~~~~~s--~---~~d~~~~~w~~~~~~ 269 (316)
.+++..+.- . ..+..|.-.++.+++
T Consensus 246 ~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 246 VPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp -TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred cCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 887765543 2 223344445555543
No 402
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.57 E-value=0.039 Score=50.70 Aligned_cols=165 Identities=11% Similarity=0.042 Sum_probs=90.4
Q ss_pred CCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcC--CcccCCCCCCCCceecccccccCCCcccEEEEEEccC---CC
Q 021160 31 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK--CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT---SE 105 (316)
Q Consensus 31 ~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~ 105 (316)
+|..+.|-.+.|.......++ -.-|.+.+|++.- |++... ...+........+.-+.|.|- .-
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~----------l~v~~~~p~gs~~~~V~wcp~~~~~~ 196 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQ----------LEVTPITPYGSDPQLVSWCPIAVNKV 196 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccc----------eEEeecCcCCCCcceeeecccccccc
Confidence 456788888888543322222 3347788999873 322111 111111222333455666663 22
Q ss_pred eEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEE----------ecCCCcEEEEeccCC
Q 021160 106 LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF----------FGPNDEYVMSGSDCG 174 (316)
Q Consensus 106 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----------~~~~~~~l~~~~~dg 174 (316)
++..+ .++.+++...... ....+.+|... +..++| .+|||..+++++.||
T Consensus 197 ~ic~~~~~~~i~lL~~~ra-----------------~~~l~rsHs~~--~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 197 YICYGLKGGEIRLLNINRA-----------------LRSLFRSHSQR--VTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred eeeeccCCCceeEeeechH-----------------HHHHHHhcCCC--cccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 44444 5788888777654 33455556543 433332 289999999999999
Q ss_pred eEEEEecc-CC----eeEEEeecCcc-ceEEEEEcCCC-------C--eEEEEe-CCCcEEEecCCCC
Q 021160 175 HLFIWKKK-GG----KLVRLMVGDRH-VVNQLEPHPHI-------P--MFATCG-IEKTVKLWAPMPT 226 (316)
Q Consensus 175 ~v~~wd~~-~~----~~~~~~~~~~~-~v~~~~~~p~~-------~--~l~s~~-~d~~i~iwd~~~~ 226 (316)
.+++|.+. +| .++...+.|.+ +-.|.-++.+. . ++++++ ....+++|....-
T Consensus 258 ~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w 325 (1283)
T KOG1916|consen 258 SVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW 325 (1283)
T ss_pred ccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccch
Confidence 99999864 33 33445555652 22222233221 1 234444 4456888986543
No 403
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.54 E-value=1 Score=38.79 Aligned_cols=87 Identities=17% Similarity=0.124 Sum_probs=57.7
Q ss_pred CCCcccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCC---
Q 021160 89 GKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND--- 164 (316)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--- 164 (316)
......+.++..+|.+++.+.+ +=|.|.++|+.++ ..++.++|..+...-+--.. ....
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~----------------~vvrmWKGYRdAqc~wi~~~-~~~~~~~ 366 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG----------------IVVRMWKGYRDAQCGWIEVP-EEGDRDR 366 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC----------------hhhhhhccCccceEEEEEee-ccccccc
Confidence 3455678899999998887776 5789999999988 57777777765421111111 1111
Q ss_pred -------------c-EEEEeccCCeEEEEeccCCeeEEEeec
Q 021160 165 -------------E-YVMSGSDCGHLFIWKKKGGKLVRLMVG 192 (316)
Q Consensus 165 -------------~-~l~~~~~dg~v~~wd~~~~~~~~~~~~ 192 (316)
. +++-+-.-|.|-+|.+++|..+..+..
T Consensus 367 ~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 367 SNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 1 223345678899999988887776653
No 404
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=3.2 Score=36.50 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=49.4
Q ss_pred eeeEEEecCCCcEEEEeccCCeEEEEe---------ccCCeeEE---Eee--------cCccceEEEEEcCCC---CeEE
Q 021160 154 VKGVNFFGPNDEYVMSGSDCGHLFIWK---------KKGGKLVR---LMV--------GDRHVVNQLEPHPHI---PMFA 210 (316)
Q Consensus 154 i~~~~~~~~~~~~l~~~~~dg~v~~wd---------~~~~~~~~---~~~--------~~~~~v~~~~~~p~~---~~l~ 210 (316)
|..+.. ++.|..++..+.+|.+.++= ++.|+..- ++. ...-.+..++|||+. ..|.
T Consensus 106 V~~vl~-s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 106 VYQVLL-SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEe-cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 666776 89999999988888766543 22343221 111 111246778999986 4577
Q ss_pred EEeCCCcEEEecCCCCC
Q 021160 211 TCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 211 s~~~d~~i~iwd~~~~~ 227 (316)
.-+.|.+||+|++....
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 77779999999998765
No 405
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.36 E-value=0.39 Score=37.57 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=52.5
Q ss_pred cCCCcEEEEeccCCeEEEEeccCCeeEEEe-------e-------cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-------V-------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 226 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~-------~-------~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~ 226 (316)
...+.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.|+..-+
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 346888999999999999999988764322 1 2446788899998887777766 588999998776
Q ss_pred CCCC
Q 021160 227 DFPP 230 (316)
Q Consensus 227 ~~~~ 230 (316)
....
T Consensus 98 ~W~~ 101 (219)
T PF07569_consen 98 CWIR 101 (219)
T ss_pred eeEE
Confidence 6433
No 406
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.33 E-value=1.9 Score=40.17 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=49.5
Q ss_pred eeeEEEecCCCcEEEEeccCCeEEEEeccC---------Cee---EEEee--------cCccceEEEEEcCCC---CeEE
Q 021160 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---------GKL---VRLMV--------GDRHVVNQLEPHPHI---PMFA 210 (316)
Q Consensus 154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~---------~~~---~~~~~--------~~~~~v~~~~~~p~~---~~l~ 210 (316)
|..+.. +++|.+++..+..|.+.+.=.+. |+. .+.+. .+...|..+.|||.+ ..|+
T Consensus 87 v~~i~~-n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 87 VHQISL-NPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred EEEEEE-CCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 888888 99999999988876554433221 111 11111 233578899999974 6788
Q ss_pred EEeCCCcEEEecCCC
Q 021160 211 TCGIEKTVKLWAPMP 225 (316)
Q Consensus 211 s~~~d~~i~iwd~~~ 225 (316)
.-..|+++|+||+..
T Consensus 166 vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 166 VLTSDNTLRLYDISD 180 (717)
T ss_pred EEecCCEEEEEecCC
Confidence 888899999999864
No 407
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=1.5 Score=37.66 Aligned_cols=160 Identities=12% Similarity=0.074 Sum_probs=89.6
Q ss_pred eEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCcE
Q 021160 37 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELV 115 (316)
Q Consensus 37 v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i 115 (316)
-+.+-|+..+ ++++ +...|.+.-|-+.... +.-.-.++ ....++|.++.|++|.+.+|.- .+.+|
T Consensus 25 sngvFfDDaN-kqlf-avrSggatgvvvkgpn-------dDVpiSfd-----m~d~G~I~SIkFSlDnkilAVQR~~~~v 90 (657)
T KOG2377|consen 25 SNGVFFDDAN-KQLF-AVRSGGATGVVVKGPN-------DDVPISFD-----MDDKGEIKSIKFSLDNKILAVQRTSKTV 90 (657)
T ss_pred ccceeeccCc-ceEE-EEecCCeeEEEEeCCC-------CCCCceee-----ecCCCceeEEEeccCcceEEEEecCceE
Confidence 3455565544 3333 3344666667665332 11111121 3345699999999999999885 79999
Q ss_pred EEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC-CeeEEEeecCc
Q 021160 116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDR 194 (316)
Q Consensus 116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~-~~~~~~~~~~~ 194 (316)
.+++...... +.............|....| ..+ .-+|..+..| +-+|-... .+.++..+.|.
T Consensus 91 ~f~nf~~d~~--------------~l~~~~~ck~k~~~IlGF~W-~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~ 153 (657)
T KOG2377|consen 91 DFCNFIPDNS--------------QLEYTQECKTKNANILGFCW-TSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHN 153 (657)
T ss_pred EEEecCCCch--------------hhHHHHHhccCcceeEEEEE-ecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcc
Confidence 9998743200 11111111111123888888 444 4455555444 45555433 33455566788
Q ss_pred cceEEEEEcCCCCeEEEE-e-CCCcEEEecCCCCC
Q 021160 195 HVVNQLEPHPHIPMFATC-G-IEKTVKLWAPMPTD 227 (316)
Q Consensus 195 ~~v~~~~~~p~~~~l~s~-~-~d~~i~iwd~~~~~ 227 (316)
-.|+-..|+|+.+.++.+ + ..+++.-+-++++.
T Consensus 154 ~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 154 LNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred cCccEEEEccccceEeeeccccccccccEEEeece
Confidence 889999999988773333 3 34444444444443
No 408
>PRK13684 Ycf48-like protein; Provisional
Probab=94.31 E-value=2.8 Score=35.30 Aligned_cols=154 Identities=11% Similarity=0.007 Sum_probs=84.2
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCC
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 113 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 113 (316)
.+.+.++.+.|++ .+++++ ..|.+..- .+.+. . ........-...++++.+.++++.++.+..|
T Consensus 172 ~g~~~~i~~~~~g-~~v~~g-~~G~i~~s-~~~gg-----------~--tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G 235 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAVS-SRGNFYST-WEPGQ-----------T--AWTPHQRNSSRRLQSMGFQPDGNLWMLARGG 235 (334)
T ss_pred cceEEEEEECCCC-eEEEEe-CCceEEEE-cCCCC-----------C--eEEEeeCCCcccceeeeEcCCCCEEEEecCC
Confidence 4568889999977 565555 44554321 11111 0 0001112234678899999999987777777
Q ss_pred cEEEEEcCCCCCCCCccCCccccccCCCcceeeCC--cCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160 114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 191 (316)
Q Consensus 114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~ 191 (316)
.+++=..+.+ ......... .....+.++.+ .+++..++++ .+|.+. .....|+.-....
T Consensus 236 ~~~~~s~d~G----------------~sW~~~~~~~~~~~~~l~~v~~-~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~ 296 (334)
T PRK13684 236 QIRFNDPDDL----------------ESWSKPIIPEITNGYGYLDLAY-RTPGEIWAGG-GNGTLL-VSKDGGKTWEKDP 296 (334)
T ss_pred EEEEccCCCC----------------CccccccCCccccccceeeEEE-cCCCCEEEEc-CCCeEE-EeCCCCCCCeECC
Confidence 7653233333 111111111 01122778888 7777665554 566554 4445455433332
Q ss_pred ---cCccceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160 192 ---GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 223 (316)
Q Consensus 192 ---~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~ 223 (316)
.-......+.|..+++.+++| ..|.|--|+-
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 297 VGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYVG 330 (334)
T ss_pred cCCCCCcceEEEEEeCCCceEEEC-CCceEEEecC
Confidence 122357778887776666655 5788877764
No 409
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.13 E-value=1.3 Score=38.63 Aligned_cols=158 Identities=11% Similarity=0.153 Sum_probs=91.1
Q ss_pred CCccceEEEEECCCCCcEE-EEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-----
Q 021160 32 MNSIRLNAIVIDPRNPNYF-AVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE----- 105 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l-~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----- 105 (316)
|..-...-+..+-+..++| ..|+....++-.|++.|++..+ + .-|.. + -+.|.|..+
T Consensus 464 GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIErGkvvee---------W------~~~dd-v-vVqy~p~~kf~qmt 526 (776)
T COG5167 464 GKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEE---------W------DLKDD-V-VVQYNPYFKFQQMT 526 (776)
T ss_pred CCcCChhhceeecCCcceEEecCCCcccceeeecccceeeeE---------e------ecCCc-c-eeecCCchhHHhcC
Confidence 3333344444444333444 4466677788888888774311 1 12222 2 456666532
Q ss_pred ---eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcce--eeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEe
Q 021160 106 ---LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV--YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 180 (316)
Q Consensus 106 ---~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd 180 (316)
-|++-++..|.-.|.+-.. ..+.. .+.........+.. .....++++++..|.|++||
T Consensus 527 ~eqtlvGlS~~svFrIDPR~~g---------------NKi~v~esKdY~tKn~Fss~~--tTesGyIa~as~kGDirLyD 589 (776)
T COG5167 527 DEQTLVGLSDYSVFRIDPRARG---------------NKIKVVESKDYKTKNKFSSGM--TTESGYIAAASRKGDIRLYD 589 (776)
T ss_pred ccceEEeecccceEEecccccC---------------Cceeeeeehhccccccccccc--cccCceEEEecCCCceeeeh
Confidence 4555567777777776441 11111 11111111133332 34567999999999999999
Q ss_pred ccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 021160 181 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 224 (316)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~ 224 (316)
.-..+....+++....|..+..+.+|+++++.+ ...+.+-|++
T Consensus 590 Rig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 590 RIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred hhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 664444455667778899999999999865544 3567777764
No 410
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.07 E-value=2.7 Score=34.09 Aligned_cols=119 Identities=8% Similarity=0.097 Sum_probs=76.0
Q ss_pred CCCcccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEE
Q 021160 89 GKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 167 (316)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 167 (316)
.+....+.++.|+|+.+.|.+ .+...-.++=...+ ..++++.-..- .....+.| -.++++.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G----------------dlirtiPL~g~-~DpE~Iey-ig~n~fv 143 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG----------------DLIRTIPLTGF-SDPETIEY-IGGNQFV 143 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCC----------------ceEEEeccccc-CChhHeEE-ecCCEEE
Confidence 344555999999999986665 55444444433333 35554432111 12456777 6678888
Q ss_pred EEeccCCeEEEEeccCCeeEE-------Eee--cC-ccceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 021160 168 MSGSDCGHLFIWKKKGGKLVR-------LMV--GD-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 225 (316)
Q Consensus 168 ~~~~~dg~v~~wd~~~~~~~~-------~~~--~~-~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~ 225 (316)
++--.++.+.++.+....... .+. .+ ....-.++|.|....|..+-+-.-+.||.+..
T Consensus 144 i~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 144 IVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred EEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 877778899888876542211 111 12 45677899999998888888777788877654
No 411
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.78 E-value=5 Score=36.24 Aligned_cols=26 Identities=15% Similarity=0.488 Sum_probs=22.1
Q ss_pred CCCc---EEEEeccCCeEEEEeccCCeeE
Q 021160 162 PNDE---YVMSGSDCGHLFIWKKKGGKLV 187 (316)
Q Consensus 162 ~~~~---~l~~~~~dg~v~~wd~~~~~~~ 187 (316)
.+|+ .++.+..+|.+++.|..+|+++
T Consensus 310 ~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 310 KDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 4565 7788999999999999999886
No 412
>PHA03098 kelch-like protein; Provisional
Probab=93.77 E-value=1.8 Score=39.15 Aligned_cols=65 Identities=6% Similarity=0.046 Sum_probs=34.9
Q ss_pred CCcEEEEeccC--------CeEEEEeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEeCC-----CcEEEecCCCCC
Q 021160 163 NDEYVMSGSDC--------GHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTD 227 (316)
Q Consensus 163 ~~~~l~~~~~d--------g~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~s~~~d-----~~i~iwd~~~~~ 227 (316)
++...+.|+.+ ..+..||..+.+-.. .+.........+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 45666666542 238889987665322 12111111112222 56666777654 467888888776
Q ss_pred CC
Q 021160 228 FP 229 (316)
Q Consensus 228 ~~ 229 (316)
..
T Consensus 515 W~ 516 (534)
T PHA03098 515 WT 516 (534)
T ss_pred EE
Confidence 33
No 413
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.75 E-value=3.8 Score=35.08 Aligned_cols=103 Identities=17% Similarity=0.304 Sum_probs=54.9
Q ss_pred cEEEEEEccCCCeEEEec------------CC-cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe
Q 021160 94 HITGLAYSNTSELLISYN------------DE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 160 (316)
Q Consensus 94 ~i~~~~~~~~~~~l~s~~------------d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (316)
....|+|.++|+++++.. .+ .|.+++-..+.+. ......+...... ...+++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~------------~d~~~vfa~~l~~--p~Gi~~- 79 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK------------YDKSNVFAEELSM--VTGLAV- 79 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC------------cceeEEeecCCCC--ccceeE-
Confidence 456889999999887742 22 6777765433100 0112333333322 678888
Q ss_pred cCCCcEEEEeccCCeEEEEeccC-----Ce--eE-EEeec----CccceEEEEEcCCCCeEEEEe
Q 021160 161 GPNDEYVMSGSDCGHLFIWKKKG-----GK--LV-RLMVG----DRHVVNQLEPHPHIPMFATCG 213 (316)
Q Consensus 161 ~~~~~~l~~~~~dg~v~~wd~~~-----~~--~~-~~~~~----~~~~v~~~~~~p~~~~l~s~~ 213 (316)
.+++ +++ ++.....++.|... ++ .+ ..+.. +......++|.|+|.+.++-+
T Consensus 80 ~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 80 AVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred ecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 7777 444 44443333435431 12 11 22322 124477899999998855444
No 414
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.60 E-value=3.2 Score=33.40 Aligned_cols=163 Identities=12% Similarity=0.027 Sum_probs=88.6
Q ss_pred ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe-cCCc
Q 021160 36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL 114 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~ 114 (316)
.+.+.++++++..+.++...++.-.||-...+. ....... ...+....|.+++.+.+.. .+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--------------~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~ 88 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--------------PVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGG 88 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--------------cceeecc--CCccccccccCCCCEEEEEcCCCc
Confidence 688999999994444444233444444444332 1111111 2367788999998866664 4555
Q ss_pred EEEEE-cCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec---cCCeEEEEecc---CC---
Q 021160 115 VYLFE-KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKK---GG--- 184 (316)
Q Consensus 115 i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~v~~wd~~---~~--- 184 (316)
..++. ...+. .....+........|..+.+ +|||..++... .++.|.+--+. .+
T Consensus 89 ~~~~~~~~~g~---------------~~~~~v~~~~~~~~I~~l~v-SpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~ 152 (253)
T PF10647_consen 89 VRVVRDSASGT---------------GEPVEVDWPGLRGRITALRV-SPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR 152 (253)
T ss_pred eEEEEecCCCc---------------ceeEEecccccCCceEEEEE-CCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc
Confidence 55553 22221 11111211111014999999 99999888766 35677766543 23
Q ss_pred ---eeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEE-ecCCCCCCCC
Q 021160 185 ---KLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKL-WAPMPTDFPP 230 (316)
Q Consensus 185 ---~~~~~~~~~~~~v~~~~~~p~~~~l~s~~-~d~~i~i-wd~~~~~~~~ 230 (316)
............+..++|.+++.+++.+. .+..+.. ..+.......
T Consensus 153 ~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~~~~ 203 (253)
T PF10647_consen 153 RLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGPSTP 203 (253)
T ss_pred eeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCcccc
Confidence 11122222346789999999998865554 3443433 4444444333
No 415
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.55 E-value=4.2 Score=34.61 Aligned_cols=174 Identities=13% Similarity=0.186 Sum_probs=80.9
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEe---cCCc-EEEEeCcCCcccCCCCCCCCc
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG---SDEY-ARVYDIRKCHWYSPISSDTPV 79 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~---~dg~-v~~wd~~~~~~~~~~~~~~~~ 79 (316)
.|.-.|+.+++...++.. +.-+..+-|+|..+.+|+-|- .+.. -|||-+++..- ..
T Consensus 169 ~i~~idl~tG~~~~v~~~------------~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~--------~~ 228 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFED------------TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS--------NV 228 (386)
T ss_dssp EEEEEETTT--EEEEEEE------------SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----------
T ss_pred eEEEEECCCCceeEEEec------------CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC--------cc
Confidence 455667777666555543 234678999999877777763 2332 36777654320 01
Q ss_pred eecccccccCCCcccEEEEEEccCCCeEE--Ee-c---CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCce
Q 021160 80 DTFCPRHLIGKNNIHITGLAYSNTSELLI--SY-N---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~--s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (316)
..... ..-...+.-=-|.|+|..+. +. . +..|.-+|+.++ +....... . .
T Consensus 229 ~~v~~----~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~----------------~~~~~~~~-p-~-- 284 (386)
T PF14583_consen 229 KKVHR----RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG----------------ERRRLMEM-P-W-- 284 (386)
T ss_dssp EESS-------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT------------------EEEEEEE---S--
T ss_pred eeeec----CCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC----------------CceEEEeC-C-c--
Confidence 10000 11134455556899997332 22 2 345666777665 22221111 1 1
Q ss_pred eeeEEEecCCCcEEEEeccC----------------CeEEEEeccCCeeEEEee---------cCcc-ceEEEEEcCCCC
Q 021160 154 VKGVNFFGPNDEYVMSGSDC----------------GHLFIWKKKGGKLVRLMV---------GDRH-VVNQLEPHPHIP 207 (316)
Q Consensus 154 i~~~~~~~~~~~~l~~~~~d----------------g~v~~wd~~~~~~~~~~~---------~~~~-~v~~~~~~p~~~ 207 (316)
-..+.. +++|.+++-=+.| ..|++++++.++...... ++.. .=....|+||++
T Consensus 285 ~~H~~s-s~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk 363 (386)
T PF14583_consen 285 CSHFMS-SPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGK 363 (386)
T ss_dssp EEEEEE--TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSS
T ss_pred eeeeEE-cCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCC
Confidence 222222 6788876542222 256778887766432111 1111 113578999999
Q ss_pred e-EEEEeCCCcEEEec
Q 021160 208 M-FATCGIEKTVKLWA 222 (316)
Q Consensus 208 ~-l~s~~~d~~i~iwd 222 (316)
+ |.++...|...||-
T Consensus 364 ~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 364 WVLFRSDMEGPPAVYL 379 (386)
T ss_dssp EEEEEE-TTSS-EEEE
T ss_pred EEEEECCCCCCccEEE
Confidence 9 55666778777764
No 416
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.42 E-value=6.6 Score=37.37 Aligned_cols=151 Identities=9% Similarity=0.069 Sum_probs=91.7
Q ss_pred cEEEEEEccC-CCeEEEe-c----------CCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEec
Q 021160 94 HITGLAYSNT-SELLISY-N----------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG 161 (316)
Q Consensus 94 ~i~~~~~~~~-~~~l~s~-~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 161 (316)
.|.+..|..| +.+++.| . .|.|.+|..... ..++....+.-...+.++.-
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~----------------~~L~~v~e~~v~Gav~aL~~-- 837 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL----------------NSLELVAETVVKGAVYALVE-- 837 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC----------------Cceeeeeeeeeccceeehhh--
Confidence 4556668777 4554443 2 356777777653 34444444443333555543
Q ss_pred CCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC--CCCCCC--Cccc
Q 021160 162 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPD--NAEK 237 (316)
Q Consensus 162 ~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~--~~~~ 237 (316)
-+|+++|.- ...|++|++.+.+.++.-..+..++..+...-.+..++.|.-=+.+.+.-.+..+ +..+.. +..+
T Consensus 838 fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~W 915 (1096)
T KOG1897|consen 838 FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNW 915 (1096)
T ss_pred hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccc
Confidence 357766544 5689999999887777666777888888888888899999877776665544433 333221 2333
Q ss_pred ceeeeecCCCCceeEEecCCCeEEEEEec
Q 021160 238 IMKANKQGREDHSRITLTPDVIMHVLRLQ 266 (316)
Q Consensus 238 ~~~~~~~~~~~~~~~s~~~d~~~~~w~~~ 266 (316)
+.... .-+...++-+..+|.+.+.+..
T Consensus 916 mtave--il~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 916 MTAVE--ILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred eeeEE--EecCceEEeecccccEEEEEec
Confidence 32222 2244556666677777777654
No 417
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.27 E-value=0.37 Score=26.41 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=25.2
Q ss_pred cceEEEEEcCCCC---eEEEEeCCCcEEEecCCC
Q 021160 195 HVVNQLEPHPHIP---MFATCGIEKTVKLWAPMP 225 (316)
Q Consensus 195 ~~v~~~~~~p~~~---~l~s~~~d~~i~iwd~~~ 225 (316)
+.+.++.|+|... +|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998554 677777788999999985
No 418
>PHA02790 Kelch-like protein; Provisional
Probab=93.18 E-value=6 Score=35.31 Aligned_cols=63 Identities=5% Similarity=-0.103 Sum_probs=34.1
Q ss_pred CCcEEEEeccCC---eEEEEeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 021160 163 NDEYVMSGSDCG---HLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP 230 (316)
Q Consensus 163 ~~~~l~~~~~dg---~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~ 230 (316)
++...+.|+.++ .+..||..+.+-.. .+....... ++ ..-++++.+.|+ .+.+||+.+.+...
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG---~~e~ydp~~~~W~~ 429 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR---NAEFYCESSNTWTL 429 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC---ceEEecCCCCcEeE
Confidence 567777776543 46778877654322 111111111 22 223566666664 57789998776433
No 419
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.88 E-value=1 Score=43.06 Aligned_cols=151 Identities=7% Similarity=-0.003 Sum_probs=88.9
Q ss_pred cceEEEEECCCCCcEEEEE--ecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC--eEEEe
Q 021160 35 IRLNAIVIDPRNPNYFAVG--GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISY 110 (316)
Q Consensus 35 ~~v~~~~~~~~~~~~l~~g--~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~ 110 (316)
-++..+...+++ ...++. +.+-.|..||+++-....... ...++...+.........++.|+|.-. .++..
T Consensus 101 ~pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~----~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l 175 (1405)
T KOG3630|consen 101 IPIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYET----TVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL 175 (1405)
T ss_pred ccceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhh----ccccccccchhccccccccccccCCccchhhhhc
Confidence 456666667776 443333 334468889998654211100 011111111122234566888998653 44555
Q ss_pred cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160 111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 190 (316)
Q Consensus 111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~ 190 (316)
.|+.|.+..+.... ..+..+. .. ...++++| +|.|..++.|-..|++.-|... .+....+
T Consensus 176 ~dlsl~V~~~~~~~---------------~~v~s~p-~t--~~~Tav~W-SprGKQl~iG~nnGt~vQy~P~-leik~~i 235 (1405)
T KOG3630|consen 176 SDLSLRVKSTKQLA---------------QNVTSFP-VT--NSQTAVLW-SPRGKQLFIGRNNGTEVQYEPS-LEIKSEI 235 (1405)
T ss_pred cccchhhhhhhhhh---------------hhhcccC-cc--cceeeEEe-ccccceeeEecCCCeEEEeecc-cceeecc
Confidence 78988888765431 1222222 12 33899999 9999999999999999988754 4433333
Q ss_pred ec---C-ccceEEEEEcCCCCeEE
Q 021160 191 VG---D-RHVVNQLEPHPHIPMFA 210 (316)
Q Consensus 191 ~~---~-~~~v~~~~~~p~~~~l~ 210 (316)
.. . ...|.+++|-....+++
T Consensus 236 p~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 236 PEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred cCCCcCCCcceeEEEEecceeEEE
Confidence 32 1 36899999987666644
No 420
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.68 E-value=2.2 Score=36.85 Aligned_cols=78 Identities=10% Similarity=-0.066 Sum_probs=51.4
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeecCCC-----------------Cc-eeEEe
Q 021160 194 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGRE-----------------DH-SRITL 254 (316)
Q Consensus 194 ~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------~~-~~~s~ 254 (316)
...+.+++.+|.+++.|+...=|.|.++|+..+. ++..++..+.-+.-.....+ .. +++-.
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 3468889999999887777667899999999887 45555544332211111100 11 33456
Q ss_pred cCCCeEEEEEecccCcc
Q 021160 255 TPDVIMHVLRLQRRQTL 271 (316)
Q Consensus 255 ~~d~~~~~w~~~~~~~~ 271 (316)
...|.+.+|.++.+...
T Consensus 387 prRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRV 403 (415)
T ss_pred ccCCeEEEEecCCCCEE
Confidence 66899999999887554
No 421
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.62 E-value=6.3 Score=34.10 Aligned_cols=205 Identities=10% Similarity=0.092 Sum_probs=89.2
Q ss_pred cEEEEEe-cCCcEEEEeCcCCcccCCCCCCCCceecccccccC-CCcccEEEEEEccCCCeEEEe--c-----CCcEEEE
Q 021160 48 NYFAVGG-SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNIHITGLAYSNTSELLISY--N-----DELVYLF 118 (316)
Q Consensus 48 ~~l~~g~-~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~--~-----d~~i~iw 118 (316)
++|+..+ ..+.|.+.|+.+.... +.-.+......+.. ..-..-..+-.-|+|++++++ . -|-+.++
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~-----P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll 162 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRK-----PRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL 162 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS------EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred CcEEeeeeccCcEEEEECCCCCCC-----CceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence 4555554 7889999999854311 11111111111111 011223344456788877773 2 2347788
Q ss_pred EcCCCCCCCCccCCccccccCCCcceeeCCcC-CceeeeEEEecCCCcEEEEecc--------------------CCeEE
Q 021160 119 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQTVKGVNFFGPNDEYVMSGSD--------------------CGHLF 177 (316)
Q Consensus 119 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~--------------------dg~v~ 177 (316)
|-++. ........... ...-..+-| .|..+.+++..- ..++.
T Consensus 163 D~~tf----------------~v~g~We~~~~~~~~gYDfw~-qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~ 225 (461)
T PF05694_consen 163 DGETF----------------EVKGRWEKDRGPQPFGYDFWY-QPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLH 225 (461)
T ss_dssp -TTT------------------EEEE--SB-TT------EEE-ETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEE
T ss_pred cCccc----------------cccceeccCCCCCCCCCCeEE-cCCCCEEEEeccCChhhcccCCChhHhhcccccCeEE
Confidence 87654 33333332221 112455555 666666666532 34799
Q ss_pred EEeccCCeeEEEeecCc--cceEEEEEc--CCCCe-EEEEeCCCcEEEecC-CCCC-----CCCCCCC------------
Q 021160 178 IWKKKGGKLVRLMVGDR--HVVNQLEPH--PHIPM-FATCGIEKTVKLWAP-MPTD-----FPPLPDN------------ 234 (316)
Q Consensus 178 ~wd~~~~~~~~~~~~~~--~~v~~~~~~--p~~~~-l~s~~~d~~i~iwd~-~~~~-----~~~~~~~------------ 234 (316)
+||+.+.+.++++.--. ..+..+.|. |+..+ ++.+.-..+|..|-- ..++ +..++..
T Consensus 226 vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~ 305 (461)
T PF05694_consen 226 VWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLK 305 (461)
T ss_dssp EEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGG
T ss_pred EEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccc
Confidence 99999999999986432 235556664 55555 666655555555532 3221 1111110
Q ss_pred ----cccceeeeecCCCCce-eEEecCCCeEEEEEecccCcceeE
Q 021160 235 ----AEKIMKANKQGREDHS-RITLTPDVIMHVLRLQRRQTLAYR 274 (316)
Q Consensus 235 ----~~~~~~~~~~~~~~~~-~~s~~~d~~~~~w~~~~~~~~~~~ 274 (316)
.-+++.....+.|+++ .++.--.|.++.+|+.....+...
T Consensus 306 ~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 306 PFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp GG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred ccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 0122233325555554 567788999999999986655443
No 422
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.58 E-value=8.7 Score=35.67 Aligned_cols=126 Identities=10% Similarity=-0.017 Sum_probs=71.1
Q ss_pred cEEEEEEccCC--CeEEE-ecCCcEEEEEcCCCCCCCCcc---C-CccccccCCCcceeeCCcCCceeeeEEEec--CCC
Q 021160 94 HITGLAYSNTS--ELLIS-YNDELVYLFEKNMGLGPSPLS---L-SPEDLQKREEPQVYSGHRNSQTVKGVNFFG--PND 164 (316)
Q Consensus 94 ~i~~~~~~~~~--~~l~s-~~d~~i~iwd~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~ 164 (316)
.|+-+....-| ++|+. ..||.|.+|.++.-....... . ........++...+... ..++++++ . ...
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~---~SaWGLdI-h~~~~~ 177 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVG---ASAWGLDI-HDYKKS 177 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecC---CceeEEEE-EecCcc
Confidence 45555554433 35554 589999999874321000000 0 00000111222233322 23899998 5 667
Q ss_pred cEEEEeccCCeEEEEeccCC--eeEE-EeecCccceEEEEEcCCC---C---eEEEEeCCCcEEEecC
Q 021160 165 EYVMSGSDCGHLFIWKKKGG--KLVR-LMVGDRHVVNQLEPHPHI---P---MFATCGIEKTVKLWAP 223 (316)
Q Consensus 165 ~~l~~~~~dg~v~~wd~~~~--~~~~-~~~~~~~~v~~~~~~p~~---~---~l~s~~~d~~i~iwd~ 223 (316)
++||+++....|.+|-.... +... .-..|...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 78888888888887765432 1111 111245678889997754 2 6888899999988887
No 423
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.38 E-value=4.9 Score=32.29 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=91.0
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 83 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~ 83 (316)
.|+.+|+.+.+..........- ---.++... + .++...-.++...+||..+-+.. ..+.
T Consensus 69 ~l~~~d~~tg~~~~~~~l~~~~----------FgEGit~~~-d-~l~qLTWk~~~~f~yd~~tl~~~---------~~~~ 127 (264)
T PF05096_consen 69 SLRKVDLETGKVLQSVPLPPRY----------FGEGITILG-D-KLYQLTWKEGTGFVYDPNTLKKI---------GTFP 127 (264)
T ss_dssp EEEEEETTTSSEEEEEE-TTT------------EEEEEEET-T-EEEEEESSSSEEEEEETTTTEEE---------EEEE
T ss_pred EEEEEECCCCcEEEEEECCccc----------cceeEEEEC-C-EEEEEEecCCeEEEEccccceEE---------EEEe
Confidence 6788888877655444443111 112344443 2 45555667899999999876622 2221
Q ss_pred cccccCCCcccEEEEEEccCCC-eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCc---eeeeEEE
Q 021160 84 PRHLIGKNNIHITGLAYSNTSE-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ---TVKGVNF 159 (316)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~ 159 (316)
- ...=+.++ .+++ +++|-....++.+|..+. +..+.+....+.. .++.+.|
T Consensus 128 -----y--~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f----------------~~~~~i~V~~~g~pv~~LNELE~ 182 (264)
T PF05096_consen 128 -----Y--PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF----------------KEVRTIQVTDNGRPVSNLNELEY 182 (264)
T ss_dssp --------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-----------------SEEEEEE-EETTEE---EEEEEE
T ss_pred -----c--CCcceEEE--cCCCEEEEECCccceEEECCccc----------------ceEEEEEEEECCEECCCcEeEEE
Confidence 1 12234454 4565 555546788999998765 4444444333222 2667777
Q ss_pred ecCCCcEEEEeccCCeEEEEeccCCeeEEEeec------------C---ccceEEEEEcCCCCe-EEEE
Q 021160 160 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG------------D---RHVVNQLEPHPHIPM-FATC 212 (316)
Q Consensus 160 ~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~------------~---~~~v~~~~~~p~~~~-l~s~ 212 (316)
. +|...|=.=....|...|..+|+....+.. + ..-.+.+|+.|.... ++||
T Consensus 183 i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 183 I--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp E--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred E--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 3 566555555677888999999998876631 1 235788999987766 4554
No 424
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.21 E-value=6.2 Score=33.13 Aligned_cols=167 Identities=15% Similarity=0.156 Sum_probs=83.7
Q ss_pred ccceEEEEECCCCCcEEEEEecCCc------EEEEeCcCCcccCCCCCCCCceecccccccCC-------CcccEEEEEE
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEY------ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-------NNIHITGLAY 100 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~------v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~ 100 (316)
-+.++.+.+.|.+ ..+++-+.+|. +..+++....- ....+.......+... -.....+|++
T Consensus 19 ~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~ 92 (326)
T PF13449_consen 19 FGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQG-----GIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV 92 (326)
T ss_pred cCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCC-----CccceEeccceeccCCCCCcCCcCCCChhHeEE
Confidence 5678999999755 45555566666 55555543110 0011111111111010 1114457888
Q ss_pred ccCCCeEEEe-cC------CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC
Q 021160 101 SNTSELLISY-ND------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC 173 (316)
Q Consensus 101 ~~~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 173 (316)
.++|.++++. .+ ..|..++.... ......++..-....... ........+.++++ +|+|+.|+++.+.
T Consensus 93 ~~~g~~~is~E~~~~~~~~p~I~~~~~~G~-~~~~~~vP~~~~~~~~~~---~~~~~N~G~E~la~-~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 93 PPDGSFWISSEGGRTGGIPPRIRRFDLDGR-VIRRFPVPAAFLPDANGT---SGRRNNRGFEGLAV-SPDGRTLFAAMES 167 (326)
T ss_pred ecCCCEEEEeCCccCCCCCCEEEEECCCCc-ccceEccccccccccCcc---ccccCCCCeEEEEE-CCCCCEEEEEECc
Confidence 7888888886 46 67888886622 100000000000000000 12222234889998 9999977666542
Q ss_pred C-------e-------EEE--EeccC-Cee----EEEeec-----CccceEEEEEcCCCCeEEE
Q 021160 174 G-------H-------LFI--WKKKG-GKL----VRLMVG-----DRHVVNQLEPHPHIPMFAT 211 (316)
Q Consensus 174 g-------~-------v~~--wd~~~-~~~----~~~~~~-----~~~~v~~~~~~p~~~~l~s 211 (316)
. . +++ ||..+ ++. ...+.. ....+..+.+-+++++++.
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 2 1 444 44443 322 222222 3457888999999887653
No 425
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.85 E-value=0.03 Score=47.86 Aligned_cols=147 Identities=14% Similarity=0.164 Sum_probs=98.6
Q ss_pred EEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEE--ecCCcE
Q 021160 38 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS--YNDELV 115 (316)
Q Consensus 38 ~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s--~~d~~i 115 (316)
-...|-|.+. -++.++.+..+..||-...... . ..-++....++|..++..++. -..+.+
T Consensus 38 i~~~w~~e~~-nlavaca~tiv~~YD~agq~~l--------------e---~n~tg~aldm~wDkegdvlavlAek~~pi 99 (615)
T KOG2247|consen 38 IIHRWRPEGH-NLAVACANTIVIYYDKAGQVIL--------------E---LNPTGKALDMAWDKEGDVLAVLAEKTGPI 99 (615)
T ss_pred ceeeEecCCC-ceehhhhhhHHHhhhhhcceec--------------c---cCCchhHhhhhhccccchhhhhhhcCCCe
Confidence 3556788874 4777778888888986533211 0 122445667888888864433 368899
Q ss_pred EEEEcCCCCCCCCccCCccccccCCCcceee-CCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCc
Q 021160 116 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR 194 (316)
Q Consensus 116 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~ 194 (316)
.+||+.+. ..+.+. +.... -.-+.| ++....++.+...|.+.+++..+.+.+-.+-.|.
T Consensus 100 ylwd~n~e-----------------ytqqLE~gg~~s--~sll~w-sKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~ 159 (615)
T KOG2247|consen 100 YLWDVNSE-----------------YTQQLESGGTSS--KSLLAW-SKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQ 159 (615)
T ss_pred eechhhhh-----------------hHHHHhccCcch--HHHHhh-ccCCccccccccccceEEEeccchhhhhhhcccc
Confidence 99999875 222222 22221 112455 8889999999999999999998877665555588
Q ss_pred cceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160 195 HVVNQLEPHPHIPMFATCGIEKTVKLWAP 223 (316)
Q Consensus 195 ~~v~~~~~~p~~~~l~s~~~d~~i~iwd~ 223 (316)
.++++++|.+.+. .+.++.|..+.+-..
T Consensus 160 RRgtq~av~lEd~-vil~dcd~~L~v~~q 187 (615)
T KOG2247|consen 160 RRGTQIAVTLEDY-VILCDCDNTLSVTTQ 187 (615)
T ss_pred cceeEEEecccce-eeecCcHHHHHHhhh
Confidence 8999999999764 455565666555443
No 426
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.43 E-value=2 Score=32.29 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=25.5
Q ss_pred cceEEEEEcCCC-----C-eEEEEeCCCcEEEecCCCC
Q 021160 195 HVVNQLEPHPHI-----P-MFATCGIEKTVKLWAPMPT 226 (316)
Q Consensus 195 ~~v~~~~~~p~~-----~-~l~s~~~d~~i~iwd~~~~ 226 (316)
..+..++|||.| + +||....++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 478899999954 2 4788889999999987643
No 427
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=91.19 E-value=14 Score=35.27 Aligned_cols=178 Identities=11% Similarity=0.148 Sum_probs=102.0
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEEec----------CCcEEEEeCcCCcccCCC
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS----------DEYARVYDIRKCHWYSPI 73 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g~~----------dg~v~~wd~~~~~~~~~~ 73 (316)
.++++|-++.+ ++..+.+.+.. --..|.++.|..+...++++|+. .|.|.++.+...+
T Consensus 751 ~l~vlD~nTf~---vl~~hef~~~E----~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~----- 818 (1096)
T KOG1897|consen 751 FLRVLDQNTFE---VLSSHEFERNE----TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN----- 818 (1096)
T ss_pred EEEEecCCcee---EEeeccccccc----eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC-----
Confidence 46666665543 33333333211 02235556688774478888753 4667777776522
Q ss_pred CCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCce
Q 021160 74 SSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 153 (316)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (316)
.++...... -.+.+.++..- +|+++ ++-...|++|++.+. +.++.-..+...
T Consensus 819 ----~L~~v~e~~----v~Gav~aL~~f-ngkll-A~In~~vrLye~t~~----------------~eLr~e~~~~~~-- 870 (1096)
T KOG1897|consen 819 ----SLELVAETV----VKGAVYALVEF-NGKLL-AGINQSVRLYEWTTE----------------RELRIECNISNP-- 870 (1096)
T ss_pred ----ceeeeeeee----eccceeehhhh-CCeEE-EecCcEEEEEEcccc----------------ceehhhhcccCC--
Confidence 111111111 13344444221 34444 445678999999876 566666666665
Q ss_pred eeeEEEecCCCcEEEEeccCCeEEEEecc--CCeeEEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 021160 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKK--GGKLVRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 223 (316)
Q Consensus 154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~--~~~~~~~~~-~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~ 223 (316)
+..+.. ...+..++.|.--+.+.+...+ .|....... -+..+++++.+-.+.. ++.+-.+|.+.+-..
T Consensus 871 ~~aL~l-~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~-ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 871 IIALDL-QVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDT-YLGAENSGNLFTVRK 941 (1096)
T ss_pred eEEEEE-EecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCce-EEeecccccEEEEEe
Confidence 666666 6789999999988877765544 444444433 2556777777765544 445556777776543
No 428
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.86 E-value=8.9 Score=32.29 Aligned_cols=110 Identities=15% Similarity=0.267 Sum_probs=56.5
Q ss_pred EEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC----CcEEEEe
Q 021160 95 ITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN----DEYVMSG 170 (316)
Q Consensus 95 i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~l~~~ 170 (316)
-+.|+|.|+|+++++-..|.|++++..... . ..+.... ....... .....+++ +|+ +.+.++.
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~-~-------~~v~~~~--~v~~~~~--~gllgia~-~p~f~~n~~lYv~~ 70 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVDKDGSL-K-------TPVADLP--EVFADGE--RGLLGIAF-HPDFASNGYLYVYY 70 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEETTTEE-C-------EEEEE-T--TTBTSTT--BSEEEEEE--TTCCCC-EEEEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEeCCCcC-c-------ceecccc--ccccccc--CCccccee-ccccCCCCEEEEEE
Confidence 468999999999999889999999933220 0 0000000 1111122 33889998 663 3333333
Q ss_pred ccC--------CeEEEEeccCC-------e-eEEEeec---CccceEEEEEcCCCCeEEEEeCCCc
Q 021160 171 SDC--------GHLFIWKKKGG-------K-LVRLMVG---DRHVVNQLEPHPHIPMFATCGIEKT 217 (316)
Q Consensus 171 ~~d--------g~v~~wd~~~~-------~-~~~~~~~---~~~~v~~~~~~p~~~~l~s~~~d~~ 217 (316)
+.. ..|.-|....+ + .+..+.. .......|+|.|++.+.++.+..+.
T Consensus 71 t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 71 TNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred EcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 321 23444444433 1 1122222 2234566999999977666654443
No 429
>PHA02790 Kelch-like protein; Provisional
Probab=90.33 E-value=12 Score=33.39 Aligned_cols=60 Identities=8% Similarity=0.060 Sum_probs=31.7
Q ss_pred CCcEEEEeccCCeEEEEeccCCeeE--EEeecCccceEEEEEcCCCCeEEEEeCC-----CcEEEecCCCCC
Q 021160 163 NDEYVMSGSDCGHLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTD 227 (316)
Q Consensus 163 ~~~~l~~~~~dg~v~~wd~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l~s~~~d-----~~i~iwd~~~~~ 227 (316)
++...+.| |.+.+||..+.+-. ..+........ ++. -++++.+.||.+ ..+..||+.+.+
T Consensus 407 ~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~-~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 407 GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPE-LII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccE-EEE-ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 45556666 35678888765432 22222122222 222 256777777754 346667766654
No 430
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=90.26 E-value=17 Score=34.57 Aligned_cols=126 Identities=13% Similarity=0.061 Sum_probs=73.0
Q ss_pred ccEEEEEEcc-----CC--CeEEEec-----CCcEEEEEcCCCCCCCCccCCccc--------cccCCCcceeeCCcCCc
Q 021160 93 IHITGLAYSN-----TS--ELLISYN-----DELVYLFEKNMGLGPSPLSLSPED--------LQKREEPQVYSGHRNSQ 152 (316)
Q Consensus 93 ~~i~~~~~~~-----~~--~~l~s~~-----d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 152 (316)
..++.+.|-+ +. .++++.. ...|..|.++....+.+..+..-. .++....+....-.-.+
T Consensus 181 ~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~ 260 (753)
T PF11635_consen 181 YQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNK 260 (753)
T ss_pred ccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCC
Confidence 3566777765 22 2454432 346999999876422222221111 11111111222222223
Q ss_pred eeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEe----e-----------c----CccceEEEEEcCCCCeEEEEe
Q 021160 153 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM----V-----------G----DRHVVNQLEPHPHIPMFATCG 213 (316)
Q Consensus 153 ~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~----~-----------~----~~~~v~~~~~~p~~~~l~s~~ 213 (316)
.|.++.. ..-+.+++....||+|.++|..+-+.+... . | .-..+..++|||++-.++.-.
T Consensus 261 ~V~si~~-~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 261 RVVSITS-PELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred eEEEEEe-cccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 4778876 677889999999999999997765443322 0 0 111344588999998888888
Q ss_pred CCCcEE
Q 021160 214 IEKTVK 219 (316)
Q Consensus 214 ~d~~i~ 219 (316)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 888855
No 431
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.26 E-value=18 Score=34.91 Aligned_cols=106 Identities=8% Similarity=0.039 Sum_probs=62.4
Q ss_pred EEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEE
Q 021160 98 LAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF 177 (316)
Q Consensus 98 ~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~ 177 (316)
.+..|-..++.++-...+++||+... ++++......-+..|..+.+ .+..++.|...-.+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K----------------~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~ 999 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKK----------------KLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVH 999 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChH----------------HHHhhhhhccCceEEEEEee---cceEEEEeeccceEE
Confidence 34566666777788899999999776 44444333222344777776 467788887655555
Q ss_pred EEe--ccCCeeEEEeecC--ccceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 021160 178 IWK--KKGGKLVRLMVGD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 224 (316)
Q Consensus 178 ~wd--~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~ 224 (316)
++- ....+++ .+... ...|+++.+ -|...+|.+..=|.+.+-.+.
T Consensus 1000 ~~~y~~~~n~l~-~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1000 FVRYRREDNQLI-VFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEEecCCCeEE-EEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECC
Confidence 444 4444443 33321 234555544 344557777666666665544
No 432
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.49 E-value=19 Score=33.94 Aligned_cols=89 Identities=13% Similarity=0.142 Sum_probs=52.7
Q ss_pred ccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCcc---CCccccccCCCcc-eeeCCcCCceeeeEEEecCC---Cc
Q 021160 93 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLS---LSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPN---DE 165 (316)
Q Consensus 93 ~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~---~~ 165 (316)
-.|..+.++|+|.+++..+...|.|..+....+..... -..-...+...-. .+..+ ....|..+.| +|. +.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~-~~~~i~qv~W-hP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSN-SSLEIKQVRW-HPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCC-CCceEEEEEE-cCCCCCCC
Confidence 46889999999998888666777777775431111000 0000000000000 11111 1134899999 554 68
Q ss_pred EEEEeccCCeEEEEeccC
Q 021160 166 YVMSGSDCGHLFIWKKKG 183 (316)
Q Consensus 166 ~l~~~~~dg~v~~wd~~~ 183 (316)
.|+.-+.|+++++||+..
T Consensus 163 ~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISD 180 (717)
T ss_pred eEEEEecCCEEEEEecCC
Confidence 899999999999999864
No 433
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.49 E-value=9.9 Score=30.71 Aligned_cols=197 Identities=8% Similarity=0.007 Sum_probs=111.9
Q ss_pred cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCc
Q 021160 35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL 114 (316)
Q Consensus 35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~ 114 (316)
..-..++-.|+| ....++...+.|=-.|..+++.. ....+....-..+..-|+|..-++-...-
T Consensus 62 ~ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~---------------~ypLg~Ga~Phgiv~gpdg~~Witd~~~a 125 (353)
T COG4257 62 SAPFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVE---------------TYPLGSGASPHGIVVGPDGSAWITDTGLA 125 (353)
T ss_pred CCccccccCCCC-ceEEecCccccceecCCCCCceE---------------EEecCCCCCCceEEECCCCCeeEecCcce
Confidence 345677778888 67777777777777788777621 11123334445677788887555522225
Q ss_pred EEEEEcCCCCCCCCccCCccccccCCCcceee---CCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160 115 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 191 (316)
Q Consensus 115 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~ 191 (316)
|.-.|-++. .+..|. .|.. ..+....| .+.|.+..++.. |.---.|..+ ..+..+.
T Consensus 126 I~R~dpkt~-----------------evt~f~lp~~~a~-~nlet~vf-D~~G~lWFt~q~-G~yGrLdPa~-~~i~vfp 184 (353)
T COG4257 126 IGRLDPKTL-----------------EVTRFPLPLEHAD-ANLETAVF-DPWGNLWFTGQI-GAYGRLDPAR-NVISVFP 184 (353)
T ss_pred eEEecCccc-----------------ceEEeecccccCC-Ccccceee-CCCccEEEeecc-ccceecCccc-Cceeeec
Confidence 555555443 122221 1211 23677777 899998888763 2211222221 2234443
Q ss_pred cC-ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCC--CCcccceeeeecCCCCceeEEecCCCeEEEEEeccc
Q 021160 192 GD-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP--DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 268 (316)
Q Consensus 192 ~~-~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~w~~~~~ 268 (316)
.. ......|+..|+|..-.+.-.+..|-.-|...+.-..+. .....-....|..+-++.-++....+.++.+|-...
T Consensus 185 aPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 185 APQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred cCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence 22 235577889999988666555667777777666432222 111222334445556777777777777777775554
No 434
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.23 E-value=11 Score=31.10 Aligned_cols=103 Identities=8% Similarity=0.084 Sum_probs=53.0
Q ss_pred eeeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecC-CCCC----
Q 021160 153 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP-MPTD---- 227 (316)
Q Consensus 153 ~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~-~~~~---- 227 (316)
.+..+.. +++|.+++++.......-|+.-...-...-..-..+|.+|.|.|++.+.+.+ ..|.|+.=+. ....
T Consensus 146 s~~~~~r-~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~ 223 (302)
T PF14870_consen 146 SINDITR-SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSE 223 (302)
T ss_dssp -EEEEEE--TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE--
T ss_pred eeEeEEE-CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccc
Confidence 3777776 8999999888776666677754221111222235789999999998875544 6788887772 2111
Q ss_pred -CCCCCCCcccceeeeecCCCCceeEEecCCC
Q 021160 228 -FPPLPDNAEKIMKANKQGREDHSRITLTPDV 258 (316)
Q Consensus 228 -~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~ 258 (316)
+..+....-.++.++ +.+++...+++....
T Consensus 224 ~~~~~~~~~~~~ld~a-~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 224 PIIPIKTNGYGILDLA-YRPPNEIWAVGGSGT 254 (302)
T ss_dssp -B-TTSS--S-EEEEE-ESSSS-EEEEESTT-
T ss_pred ccCCcccCceeeEEEE-ecCCCCEEEEeCCcc
Confidence 112222223355666 445555666555543
No 435
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=89.17 E-value=17 Score=32.85 Aligned_cols=71 Identities=10% Similarity=0.081 Sum_probs=43.9
Q ss_pred EEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe--cCCcE
Q 021160 38 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELV 115 (316)
Q Consensus 38 ~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i 115 (316)
..+.|||.. ..|++-.....-.++++..... ..+.- -...+.|.|..|.+||+.|+.+ +.=.-
T Consensus 116 QGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~s-------------rVkaD-i~~~G~IhCACWT~DG~RLVVAvGSsLHS 180 (671)
T PF15390_consen 116 QGCVWHPKK-AILTVLTARDVSVLPSVHCDSS-------------RVKAD-IKTSGLIHCACWTKDGQRLVVAVGSSLHS 180 (671)
T ss_pred CcccccCCC-ceEEEEecCceeEeeeeeeCCc-------------eEEEe-ccCCceEEEEEecCcCCEEEEEeCCeEEE
Confidence 467899987 5666655444445666664331 11111 1335789999999999866654 44456
Q ss_pred EEEEcCCC
Q 021160 116 YLFEKNMG 123 (316)
Q Consensus 116 ~iwd~~~~ 123 (316)
++||-...
T Consensus 181 yiWd~~qK 188 (671)
T PF15390_consen 181 YIWDSAQK 188 (671)
T ss_pred EEecCchh
Confidence 78886544
No 436
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.93 E-value=2.3 Score=22.76 Aligned_cols=40 Identities=5% Similarity=0.032 Sum_probs=26.9
Q ss_pred CCCcEEEEec-cCCeEEEEeccCCeeEEEeecCccceEEEEE
Q 021160 162 PNDEYVMSGS-DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 202 (316)
Q Consensus 162 ~~~~~l~~~~-~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~ 202 (316)
|++++|+++. .++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 4566665544 5889999999999888877653 23344544
No 437
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.87 E-value=15 Score=31.88 Aligned_cols=112 Identities=14% Similarity=0.128 Sum_probs=64.4
Q ss_pred cccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCC--CcceeeCCcCCceeeeEEEecCCCcEEEE
Q 021160 92 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKRE--EPQVYSGHRNSQTVKGVNFFGPNDEYVMS 169 (316)
Q Consensus 92 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 169 (316)
...+..+.+.+++.+++.+.+|.+..= ...+. +.. ......-......+.++.| .+++..+++
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G~-------------~~~~~~f~~~~~~~~~~~l~~v~~-~~d~~~~a~ 344 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYVS-KGTGL-------------TEEDFDFEEADIKSRGFGILDVGY-RSKKEAWAA 344 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEEe-cCCCC-------------cccccceeecccCCCCcceEEEEE-cCCCcEEEE
Confidence 456889999999998888877776543 32220 000 1111111111123888888 667666555
Q ss_pred eccCCeEEEEeccCCeeEEEee---cCccceEEEEEcCCCCeEEEEeCCCcEEEe
Q 021160 170 GSDCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLW 221 (316)
Q Consensus 170 ~~~dg~v~~wd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~s~~~d~~i~iw 221 (316)
| ..|.+... ...|+.-.... .-....+.+.|.++++.+++| .+|.|.-|
T Consensus 345 G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 345 G-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred E-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 5 56766544 34455433332 223467889988877777666 47776654
No 438
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.65 E-value=8.4 Score=35.90 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=41.4
Q ss_pred eEEEecCCCcEEEEeccCC-----eEEEEecc---CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 156 GVNFFGPNDEYVMSGSDCG-----HLFIWKKK---GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 156 ~~~~~~~~~~~l~~~~~dg-----~v~~wd~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
.++| -|.|..+++-..|| .|.++..+ .|+.-... +....+..++|+-....++.+ ....+++|-...-.
T Consensus 251 ~LSW-kpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyh 327 (1243)
T COG5290 251 QLSW-KPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYH 327 (1243)
T ss_pred cccc-ccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceE
Confidence 4677 89999999876544 35566533 23321111 223456677887665555443 45689999876643
No 439
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.41 E-value=21 Score=33.14 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=26.8
Q ss_pred cEEEEEEccCCCeEEEecCCcEEEEEcCCC
Q 021160 94 HITGLAYSNTSELLISYNDELVYLFEKNMG 123 (316)
Q Consensus 94 ~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~ 123 (316)
.+..+.|+.+.++++...+|++++|++-..
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchh
Confidence 788999999988998899999999998654
No 440
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=88.14 E-value=12 Score=30.07 Aligned_cols=108 Identities=14% Similarity=0.051 Sum_probs=65.8
Q ss_pred cEEEEEEccCCCeEEE-e-cCC--cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEE
Q 021160 94 HITGLAYSNTSELLIS-Y-NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 169 (316)
Q Consensus 94 ~i~~~~~~~~~~~l~s-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 169 (316)
.+.+.++++++..++. . .++ .++++..... ....+.+. .+..-.| ++++...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-----------------~~~~~~g~----~l~~PS~-d~~g~~W~v 82 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-----------------VRPVLTGG----SLTRPSW-DPDGWVWTV 82 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-----------------ceeeccCC----ccccccc-cCCCCEEEE
Confidence 6789999999986655 3 233 4555544332 22222322 2777788 888887777
Q ss_pred eccCCeEEEEe-ccCCeeEE-Eeec--CccceEEEEEcCCCCeEEEEe---CCCcEEEecC
Q 021160 170 GSDCGHLFIWK-KKGGKLVR-LMVG--DRHVVNQLEPHPHIPMFATCG---IEKTVKLWAP 223 (316)
Q Consensus 170 ~~~dg~v~~wd-~~~~~~~~-~~~~--~~~~v~~~~~~p~~~~l~s~~---~d~~i~iwd~ 223 (316)
...+...+++. ..+++... .+.. -...|..+.++|||..+|... .++.|.+--+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 83 DDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred EcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 77677767664 33333221 1211 112899999999999866554 3466776654
No 441
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.93 E-value=2.3 Score=37.19 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=48.1
Q ss_pred cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCC
Q 021160 48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG 123 (316)
Q Consensus 48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~ 123 (316)
-++|+|+..|.|++||.-.. ..++.+.+....|..+..+.+|+++++.....+.+-|+.-.
T Consensus 574 GyIa~as~kGDirLyDRig~---------------rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ik 634 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGK---------------RAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPIK 634 (776)
T ss_pred ceEEEecCCCceeeehhhcc---------------hhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecccc
Confidence 49999999999999996433 34444466678899999999999877777788888888644
No 442
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.61 E-value=16 Score=31.89 Aligned_cols=106 Identities=11% Similarity=0.134 Sum_probs=63.0
Q ss_pred CccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecC
Q 021160 33 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND 112 (316)
Q Consensus 33 h~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d 112 (316)
-+++|.++.|++++ +.+|+--.+..|.+++....+... ............|....|+..-. +|--.+
T Consensus 65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l-----------~~~~~ck~k~~~IlGF~W~~s~e-~A~i~~ 131 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQL-----------EYTQECKTKNANILGFCWTSSTE-IAFITD 131 (657)
T ss_pred CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhh-----------HHHHHhccCcceeEEEEEecCee-EEEEec
Confidence 46799999999999 899999999999999984332100 00011122345688888887643 333334
Q ss_pred CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEE
Q 021160 113 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 169 (316)
Q Consensus 113 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 169 (316)
.-+-+|...... ..++..+.+... |.=..| .++...++.
T Consensus 132 ~G~e~y~v~pek---------------rslRlVks~~~n--vnWy~y-c~et~v~LL 170 (657)
T KOG2377|consen 132 QGIEFYQVLPEK---------------RSLRLVKSHNLN--VNWYMY-CPETAVILL 170 (657)
T ss_pred CCeEEEEEchhh---------------hhhhhhhhcccC--ccEEEE-ccccceEee
Confidence 445555554331 244555555544 555555 555554433
No 443
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.19 E-value=12 Score=28.92 Aligned_cols=57 Identities=12% Similarity=0.202 Sum_probs=34.0
Q ss_pred eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEee------------cCccceEEEEEcCCCCe-EEEE
Q 021160 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV------------GDRHVVNQLEPHPHIPM-FATC 212 (316)
Q Consensus 154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~------------~~~~~v~~~~~~p~~~~-l~s~ 212 (316)
++.+.| -+|...|-.=.+..|...+.++|+.+..+. .|....+.+++.|++.. ++||
T Consensus 178 LNELE~--VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 178 LNELEW--VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccceee--eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 445555 355555544455566666777777655432 23446678999998744 5555
No 444
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=86.67 E-value=17 Score=34.49 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=24.2
Q ss_pred CCcEEEEeccCCeEEEEeccCCeeEEEee
Q 021160 163 NDEYVMSGSDCGHLFIWKKKGGKLVRLMV 191 (316)
Q Consensus 163 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~~ 191 (316)
.+..++.++.|+.+.-.|.++|+.+..+.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg 287 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFG 287 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEec
Confidence 34578889999999999999999887653
No 445
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.56 E-value=27 Score=34.71 Aligned_cols=159 Identities=10% Similarity=0.098 Sum_probs=82.9
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEE--------ECCCCCcEEEEEecCCcEEEEeCcCCcccCCC
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV--------IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI 73 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~--------~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~ 73 (316)
+..+.+|+..+....+.+... ...|..+. |.|.=..+|+.++ --.|.++-+.-.+....
T Consensus 98 Dn~L~lWny~~~~e~~~~d~~-----------shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~- 164 (1311)
T KOG1900|consen 98 DNNLFLWNYESDNELAEYDGL-----------SHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGE- 164 (1311)
T ss_pred CCeEEEEEcCCCCccccccch-----------hhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCc-
Confidence 567899999886544443321 22344444 2333213344443 34566666543321100
Q ss_pred CCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccc---------cccCCCcce
Q 021160 74 SSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPED---------LQKREEPQV 144 (316)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~ 144 (316)
...+...-.+......|.++....+|+++.+|.||.|+-.-.+...+=.....+..+ +++ ..+.
T Consensus 165 -----~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs--~~~~ 237 (1311)
T KOG1900|consen 165 -----LSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS--LLSV 237 (1311)
T ss_pred -----ccccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhh--hhcC
Confidence 000000000012256789999889999999998885542222221100000000000 111 1111
Q ss_pred eeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccC
Q 021160 145 YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG 183 (316)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~ 183 (316)
...+.. +|..+.. ...-+.+.+-++.|+|..|++..
T Consensus 238 ~~~~~d--pI~qi~I-D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 238 PGSSKD--PIRQITI-DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCCC--cceeeEe-ccccceeeeeccCceEEEEEccC
Confidence 113333 4999998 77888999999999999999875
No 446
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.42 E-value=23 Score=35.09 Aligned_cols=71 Identities=11% Similarity=0.180 Sum_probs=49.0
Q ss_pred CceeeeEEEecCCCcEEEEeccCCeEEEEecc----CC---e-e----------------EEEee-cCccceEEEEEcCC
Q 021160 151 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK----GG---K-L----------------VRLMV-GDRHVVNQLEPHPH 205 (316)
Q Consensus 151 ~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~----~~---~-~----------------~~~~~-~~~~~v~~~~~~p~ 205 (316)
+..|.++.. ..+|+.+++|- ||. +|.+. .+ + + +..++ .+..+|..++....
T Consensus 178 g~~V~~I~~-t~nGRIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 178 GVSVNCITY-TENGRIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred CceEEEEEe-ccCCcEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 345889986 78888777665 443 44422 11 1 1 11223 45679999999877
Q ss_pred CCeEEEEeCCCcEEEecCCC
Q 021160 206 IPMFATCGIEKTVKLWAPMP 225 (316)
Q Consensus 206 ~~~l~s~~~d~~i~iwd~~~ 225 (316)
-+.+.+-++.++|.+|++..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 77888999999999999876
No 447
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.37 E-value=28 Score=32.39 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=45.9
Q ss_pred eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec-CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 021160 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP 229 (316)
Q Consensus 154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~ 229 (316)
+..+.. +|+.++|+-=...|.+.+-+....+....+.. .......++|.-+. -++.+.+..+.+....+..+.
T Consensus 219 ~~ki~V-S~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd--aVvl~~e~~l~lvgp~gd~V~ 292 (829)
T KOG2280|consen 219 VVKISV-SPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND--AVVLSWEVNLMLVGPPGDSVQ 292 (829)
T ss_pred EEEEEE-cCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC--ceEEEEeeeEEEEcCCCCccc
Confidence 555666 88999999999999999998887776666542 12333467776554 223334445555555444433
No 448
>PRK10115 protease 2; Provisional
Probab=86.24 E-value=30 Score=32.59 Aligned_cols=195 Identities=11% Similarity=0.160 Sum_probs=93.8
Q ss_pred cceEEEEECCCCCcEEEEEe-----cCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCC-eEE
Q 021160 35 IRLNAIVIDPRNPNYFAVGG-----SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLI 108 (316)
Q Consensus 35 ~~v~~~~~~~~~~~~l~~g~-----~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 108 (316)
-.+..+.++|++ ++|+.+. ....|++.|+.+++.+ ...+.+-. ..++|.++++ ++.
T Consensus 127 ~~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~~l--------------~~~i~~~~---~~~~w~~D~~~~~y 188 (686)
T PRK10115 127 YTLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGNWY--------------PELLDNVE---PSFVWANDSWTFYY 188 (686)
T ss_pred EEEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCCCC--------------CccccCcc---eEEEEeeCCCEEEE
Confidence 457788999999 6776653 2344888888877521 11111111 4589999987 445
Q ss_pred Eec-C-----CcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceee-eEEEecCCCcEEEEecc---CCeEEE
Q 021160 109 SYN-D-----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK-GVNFFGPNDEYVMSGSD---CGHLFI 178 (316)
Q Consensus 109 s~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~---dg~v~~ 178 (316)
+.. + ..|+.+++.++.. .....+...... .. .+.. +.++++++..+. ++.+.+
T Consensus 189 ~~~~~~~~~~~~v~~h~lgt~~~--------------~d~lv~~e~~~~--~~~~~~~-s~d~~~l~i~~~~~~~~~~~l 251 (686)
T PRK10115 189 VRKHPVTLLPYQVWRHTIGTPAS--------------QDELVYEEKDDT--FYVSLHK-TTSKHYVVIHLASATTSEVLL 251 (686)
T ss_pred EEecCCCCCCCEEEEEECCCChh--------------HCeEEEeeCCCC--EEEEEEE-cCCCCEEEEEEECCccccEEE
Confidence 433 2 3577777766510 112233332222 22 2222 557777665443 457888
Q ss_pred Eecc--CCeeEEEeecCccceEEEEEcCCCCeEEEEeCC-C--cEEEecCC-CCCCCCCCCC-cccceeeeecCCCCcee
Q 021160 179 WKKK--GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-K--TVKLWAPM-PTDFPPLPDN-AEKIMKANKQGREDHSR 251 (316)
Q Consensus 179 wd~~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d-~--~i~iwd~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 251 (316)
++.. .++....+.........+. +..+.+++....+ . .|...++. ......+..+ ....+....+. .+.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~ 329 (686)
T PRK10115 252 LDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLV 329 (686)
T ss_pred EECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEE
Confidence 8842 3443222322222222332 3333333332221 2 33333444 2222333333 22222222122 44566
Q ss_pred EEecCCCeEEEEEec
Q 021160 252 ITLTPDVIMHVLRLQ 266 (316)
Q Consensus 252 ~s~~~d~~~~~w~~~ 266 (316)
++...++.-+++-+.
T Consensus 330 ~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 330 VEERQRGLTSLRQIN 344 (686)
T ss_pred EEEEeCCEEEEEEEc
Confidence 777777776666554
No 449
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.92 E-value=3.6 Score=37.42 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=41.1
Q ss_pred CCCcEEEEeccCCeEEEEeccC----CeeEEE-eec---------------------CccceEEEEEcC----CCCeEEE
Q 021160 162 PNDEYVMSGSDCGHLFIWKKKG----GKLVRL-MVG---------------------DRHVVNQLEPHP----HIPMFAT 211 (316)
Q Consensus 162 ~~~~~l~~~~~dg~v~~wd~~~----~~~~~~-~~~---------------------~~~~v~~~~~~p----~~~~l~s 211 (316)
++...++.+..||.+....... +..... ... ....+..+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3667788888888888777653 221111 110 013455667776 6678999
Q ss_pred EeCCCcEEEecCCCCCC
Q 021160 212 CGIEKTVKLWAPMPTDF 228 (316)
Q Consensus 212 ~~~d~~i~iwd~~~~~~ 228 (316)
.+.|+++|+||+.+++.
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999998874
No 450
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.62 E-value=15 Score=28.51 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=31.9
Q ss_pred EEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEe
Q 021160 49 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 110 (316)
Q Consensus 49 ~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 110 (316)
.|+.+...+.|.+|++....+ .+...| ..-+.|..+.++..|.++++-
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~-------~~~~~F-------~Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEEC-------PLLCTF-------STVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCC-------ceeEEE-------cchhheeEEEeccccceEEEE
Confidence 444435667899999984431 112222 123679999999999999984
No 451
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.18 E-value=18 Score=28.13 Aligned_cols=103 Identities=10% Similarity=0.064 Sum_probs=61.2
Q ss_pred CeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEecc---CC---eEEE
Q 021160 105 ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CG---HLFI 178 (316)
Q Consensus 105 ~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg---~v~~ 178 (316)
.++++.....|.+|++.... .++...|..- + .|..+.+ +..|+++++--. .. .+|+
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~--------------~~~~~~F~Tv-~--~V~~l~y-~~~GDYlvTlE~k~~~~~~~fvR~ 91 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEE--------------CPLLCTFSTV-G--RVLQLVY-SEAGDYLVTLEEKNKRSPVDFVRA 91 (215)
T ss_pred eEEEEcCCCEEEEEEcccCC--------------CceeEEEcch-h--heeEEEe-ccccceEEEEEeecCCccceEEEE
Confidence 35555677889999998431 1344455543 3 3889998 899999998643 22 5565
Q ss_pred Ee-cc----CCeeEE-EeecC---------------------ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160 179 WK-KK----GGKLVR-LMVGD---------------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 226 (316)
Q Consensus 179 wd-~~----~~~~~~-~~~~~---------------------~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~ 226 (316)
|- .+ ..+++. .+.|| ...+.+++..|-.--|+.|+ ++++.+|.+...
T Consensus 92 Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 92 YFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 53 11 112222 12222 23567788888544455555 578899987544
No 452
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.86 E-value=16 Score=33.32 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=25.0
Q ss_pred CCcEEEEeccCCeEEEEeccCCeeEEEe
Q 021160 163 NDEYVMSGSDCGHLFIWKKKGGKLVRLM 190 (316)
Q Consensus 163 ~~~~l~~~~~dg~v~~wd~~~~~~~~~~ 190 (316)
+..++++.+.|+.+|+||+.+++++...
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 6788999999999999999999996655
No 453
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.84 E-value=22 Score=28.89 Aligned_cols=116 Identities=8% Similarity=0.026 Sum_probs=74.7
Q ss_pred cccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec
Q 021160 92 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 171 (316)
Q Consensus 92 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 171 (316)
........|.+.|++-.++..|.---.|.... .++.|..... ...+.|+. .|+|...++.-
T Consensus 147 ~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~-----------------~i~vfpaPqG-~gpyGi~a-tpdGsvwyasl 207 (353)
T COG4257 147 DANLETAVFDPWGNLWFTGQIGAYGRLDPARN-----------------VISVFPAPQG-GGPYGICA-TPDGSVWYASL 207 (353)
T ss_pred CCcccceeeCCCccEEEeeccccceecCcccC-----------------ceeeeccCCC-CCCcceEE-CCCCcEEEEec
Confidence 45677888999999777765443223333222 3444443322 23566777 89999888877
Q ss_pred cCCeEEEEeccCCeeEEEee---cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 172 DCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 172 ~dg~v~~wd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
.+..|-..|..++.. ..+. ........+--+|.+..-+|-...+.+..+|.....
T Consensus 208 agnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 208 AGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred cccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 788888888776632 2222 212334456567888887777778889999988766
No 454
>PRK13684 Ycf48-like protein; Provisional
Probab=83.72 E-value=26 Score=29.63 Aligned_cols=114 Identities=11% Similarity=-0.014 Sum_probs=64.7
Q ss_pred cccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEec
Q 021160 92 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 171 (316)
Q Consensus 92 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 171 (316)
...+..+.+.|++.+++.+..|.+..-.-..+ ......... ....++++.+ .++++.++.+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg----------------~tW~~~~~~-~~~~l~~i~~-~~~g~~~~vg- 232 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQ----------------TAWTPHQRN-SSRRLQSMGF-QPDGNLWMLA- 232 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCC----------------CeEEEeeCC-CcccceeeeE-cCCCCEEEEe-
Confidence 45688899999888888787786654211111 111222211 1134888888 7888877665
Q ss_pred cCCeEEEEeccCCeeEEEeec----CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 021160 172 DCGHLFIWKKKGGKLVRLMVG----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 226 (316)
Q Consensus 172 ~dg~v~~wd~~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~ 226 (316)
..|.+++=....|..-..... -...+.++.+.|++..++. +.+|.+.. ....+
T Consensus 233 ~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G 289 (334)
T PRK13684 233 RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGG 289 (334)
T ss_pred cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCC
Confidence 457665333444433222111 1235778899998776554 45776654 33433
No 455
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=83.39 E-value=43 Score=32.05 Aligned_cols=127 Identities=11% Similarity=0.115 Sum_probs=74.6
Q ss_pred cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecc--cccc-cC-CCcccEEEEEEccCCCeEEEe
Q 021160 35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC--PRHL-IG-KNNIHITGLAYSNTSELLISY 110 (316)
Q Consensus 35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~--~~~~-~~-~~~~~i~~~~~~~~~~~l~s~ 110 (316)
.+...++|+|.....||+-...|...||++....-... ..+...+ ...+ .. ........+.|.++-..|+.+
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~----~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~ 221 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKS----SNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC 221 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCC----cceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE
Confidence 35679999998878999999999999999922110000 0000000 0001 01 112455688998888877888
Q ss_pred cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCC-CcEEEEeccCCeEEEEeccC
Q 021160 111 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKG 183 (316)
Q Consensus 111 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~~wd~~~ 183 (316)
+...+.++|+++. .....+........|.++.- ++. ..+++.-+ ...|...++..
T Consensus 222 ~r~~l~~~d~~~~----------------~~~~~l~~~~~~~~IlDv~~-~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 222 NRSKLMLIDFESN----------------WQTEYLVTAKTWSWILDVKR-SPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred cCCceEEEECCCC----------------CccchhccCCChhheeeEEe-cCCccceEEEEe-cCeEEEEEccC
Confidence 8889999999876 22221222222234888876 555 22222222 25677777665
No 456
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.34 E-value=24 Score=31.43 Aligned_cols=88 Identities=9% Similarity=0.150 Sum_probs=51.8
Q ss_pred cceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceeccccc-----ccCCCcccEEEEEEccCC----C
Q 021160 35 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH-----LIGKNNIHITGLAYSNTS----E 105 (316)
Q Consensus 35 ~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~----~ 105 (316)
-.|..+..++.| ..++-.+.+|.+.++=.+.......+....++-...... ......-.+..++|+|+. .
T Consensus 104 feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 104 FEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 357888899999 778777888876665433221111122222221111100 111123356788999976 3
Q ss_pred eEEEecCCcEEEEEcCCC
Q 021160 106 LLISYNDELVYLFEKNMG 123 (316)
Q Consensus 106 ~l~s~~d~~i~iwd~~~~ 123 (316)
+++-.+|..|++||+...
T Consensus 183 L~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEEecCcEEEEEecCCc
Confidence 566689999999999765
No 457
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.92 E-value=5.2 Score=21.08 Aligned_cols=29 Identities=3% Similarity=-0.099 Sum_probs=18.8
Q ss_pred CccceEEEEEcCCCCeEEEEe-CC--CcEEEe
Q 021160 193 DRHVVNQLEPHPHIPMFATCG-IE--KTVKLW 221 (316)
Q Consensus 193 ~~~~v~~~~~~p~~~~l~s~~-~d--~~i~iw 221 (316)
....-....|+|||+.|+-.+ .+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567789999999976554 44 555555
No 458
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.70 E-value=16 Score=29.93 Aligned_cols=62 Identities=10% Similarity=0.114 Sum_probs=44.8
Q ss_pred cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe------CCCcEEEecCCCCCCCCCCC
Q 021160 172 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG------IEKTVKLWAPMPTDFPPLPD 233 (316)
Q Consensus 172 ~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~ 233 (316)
....|++||..+.+-...-.+-.+.|+++.|..+.+.++.|. ....+..||+.......+.+
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence 355799999887775555455568899999986666677664 35578899998887555544
No 459
>PRK10115 protease 2; Provisional
Probab=82.47 E-value=44 Score=31.50 Aligned_cols=109 Identities=6% Similarity=-0.057 Sum_probs=62.5
Q ss_pred ccEEEEEEccCCCeEEEec--CC----cEEEEEcCCCCCCCCccCCccccccCCCc-ceeeCCcCCceeeeEEEecCCCc
Q 021160 93 IHITGLAYSNTSELLISYN--DE----LVYLFEKNMGLGPSPLSLSPEDLQKREEP-QVYSGHRNSQTVKGVNFFGPNDE 165 (316)
Q Consensus 93 ~~i~~~~~~~~~~~l~s~~--d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~ 165 (316)
-.+..+.++|+|++|+.+. +| .|++.|+.++ ..+ ..+.+ . -..++| .++++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg----------------~~l~~~i~~-~----~~~~~w-~~D~~ 184 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG----------------NWYPELLDN-V----EPSFVW-ANDSW 184 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC----------------CCCCccccC-c----ceEEEE-eeCCC
Confidence 4577789999999776643 22 3888888766 221 12221 1 134788 88887
Q ss_pred EEEEeccC------CeEEEEeccCC--eeEEEeecCccceE-EEEEcCCCCeEEEEe---CCCcEEEecC
Q 021160 166 YVMSGSDC------GHLFIWKKKGG--KLVRLMVGDRHVVN-QLEPHPHIPMFATCG---IEKTVKLWAP 223 (316)
Q Consensus 166 ~l~~~~~d------g~v~~wd~~~~--~~~~~~~~~~~~v~-~~~~~p~~~~l~s~~---~d~~i~iwd~ 223 (316)
.|+....+ ..|+.+++.++ +-...+........ .+..+.++++++..+ .++.+.+++.
T Consensus 185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 66555432 36788888877 33333433222222 333344777754333 3457888884
No 460
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=82.20 E-value=4.4 Score=19.71 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCcEEEEEecCCcEEEEe
Q 021160 36 RLNAIVIDPRNPNYFAVGGSDEYARVYD 63 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd 63 (316)
.|.+++..+ .+++++.+.+.+|+|.
T Consensus 3 ~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC---CEEEEEeCCCeEEecC
Confidence 577888865 6899999999999984
No 461
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=82.17 E-value=27 Score=28.77 Aligned_cols=197 Identities=17% Similarity=0.210 Sum_probs=91.3
Q ss_pred eeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCC----cE-EEEEecCCcEEEEeCcCCcccCCCC---C
Q 021160 4 FNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP----NY-FAVGGSDEYARVYDIRKCHWYSPIS---S 75 (316)
Q Consensus 4 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~----~~-l~~g~~dg~v~~wd~~~~~~~~~~~---~ 75 (316)
.|-+||+++++..+.+.+..... . ..+.++.+.+..... .+ +++=+..+.|.++|+.+++...... .
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~--~---~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~ 109 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIA--P---PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFS 109 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS------TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCT
T ss_pred EEEEEECCCCcEEEEEECChHHc--c---cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcc
Confidence 57789999988766666643221 0 246788888877431 23 3333455689999999876332211 1
Q ss_pred CCC-ceecccccccCCCcccEEEEEEcc---CCCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc
Q 021160 76 DTP-VDTFCPRHLIGKNNIHITGLAYSN---TSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 149 (316)
Q Consensus 76 ~~~-~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (316)
..| ...+......-.....+..++.+| +++.|.-. ....++--....-..+ ...... .-...++.+-...
T Consensus 110 ~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~---~~~~~~-~~~~~v~~lG~k~ 185 (287)
T PF03022_consen 110 PDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDP---SLSDAQ-ALASQVQDLGDKG 185 (287)
T ss_dssp TS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCST---T--HHH--HHHT-EEEEE--
T ss_pred eeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCc---cccccc-cccccceeccccC
Confidence 111 011110000001123366667665 44544332 2333332222110000 000000 0001112221111
Q ss_pred CCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC---eeEEEee-c-C-ccceEEEEEcC--CCCeEEEE
Q 021160 150 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG---KLVRLMV-G-D-RHVVNQLEPHP--HIPMFATC 212 (316)
Q Consensus 150 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~---~~~~~~~-~-~-~~~v~~~~~~p--~~~~l~s~ 212 (316)
.. ...+++ +++|.+.++--..+.|..|+.... +....+. . . -..+..+.+.+ ++.+.+..
T Consensus 186 ~~--s~g~~~-D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 186 SQ--SDGMAI-DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp -S--ECEEEE-ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CC--CceEEE-CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 12 455666 789999989899999999998751 1122222 1 1 24677888887 65554433
No 462
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=81.90 E-value=46 Score=31.24 Aligned_cols=162 Identities=10% Similarity=0.084 Sum_probs=86.6
Q ss_pred CCeEEEecCCcEEEEEcCCCCCCCCc--cCCccccccC--CCcceeeCCcCCceeeeEEEe-cCCCcEEEEeccCCeEEE
Q 021160 104 SELLISYNDELVYLFEKNMGLGPSPL--SLSPEDLQKR--EEPQVYSGHRNSQTVKGVNFF-GPNDEYVMSGSDCGHLFI 178 (316)
Q Consensus 104 ~~~l~s~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~dg~v~~ 178 (316)
..+++.+..+.|.||+.+........ .+...-.+.. .....+.....+..|+.+..- =.....|+.+.+||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 56777777999999998765321100 0000000000 000001100011125444431 134568889999999999
Q ss_pred EeccC-------C----e---------eEEEeecCccceEEEEEc--CCCCeEEEEeCCCcEEEecCCCC--CCCCCC--
Q 021160 179 WKKKG-------G----K---------LVRLMVGDRHVVNQLEPH--PHIPMFATCGIEKTVKLWAPMPT--DFPPLP-- 232 (316)
Q Consensus 179 wd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--p~~~~l~s~~~d~~i~iwd~~~~--~~~~~~-- 232 (316)
|..++ . + +...+. -...++.++++ ...++||.++....|.||-.... +....+
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 97531 1 0 111112 22468899998 77888998888888888865542 211111
Q ss_pred CCcccceeeeecCC--CCc---eeEEecCCCeEEEEEec
Q 021160 233 DNAEKIMKANKQGR--EDH---SRITLTPDVIMHVLRLQ 266 (316)
Q Consensus 233 ~~~~~~~~~~~~~~--~~~---~~~s~~~d~~~~~w~~~ 266 (316)
.+..-|-.+..... ++. .+++.+-.|.+.+|++.
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 12222323332222 222 77788889999999883
No 463
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=81.56 E-value=5 Score=20.06 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=20.4
Q ss_pred cEEEEeccCCeEEEEeccCCeeEEE
Q 021160 165 EYVMSGSDCGHLFIWKKKGGKLVRL 189 (316)
Q Consensus 165 ~~l~~~~~dg~v~~wd~~~~~~~~~ 189 (316)
..++.++.+|.+..+|..+|+.+-.
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3677788899999999998887654
No 464
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=80.99 E-value=43 Score=30.39 Aligned_cols=118 Identities=16% Similarity=0.127 Sum_probs=60.3
Q ss_pred cEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCC
Q 021160 48 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 127 (316)
Q Consensus 48 ~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~ 127 (316)
..++.++.++.|.-+|..+++.+.......+...... ......-..+++. +++++++..|+.+.-+|..++
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~----~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TG---- 140 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPV----MCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTG---- 140 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccc----cccccccccceEE-CCEEEEEcCCCEEEEEECCCC----
Confidence 4666677788999999999875433211110000000 0000000112222 345666667999999999888
Q ss_pred CccCCccccccCCCcceeeCC--cCCceeeeEEEecC--CCcEEEEec------cCCeEEEEeccCCeeEEEe
Q 021160 128 PLSLSPEDLQKREEPQVYSGH--RNSQTVKGVNFFGP--NDEYVMSGS------DCGHLFIWKKKGGKLVRLM 190 (316)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~--~~~~l~~~~------~dg~v~~wd~~~~~~~~~~ 190 (316)
+.+-..... .....+.+ +| .+..++.+. .+|.|.-+|.++|+.+-.+
T Consensus 141 ------------k~~W~~~~~~~~~~~~~ts----sP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 141 ------------KVVWSKKNGDYKAGYTITA----APLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred ------------CEEeecccccccccccccC----CcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 343332211 10000111 11 123444443 2688999999999887654
No 465
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=79.61 E-value=34 Score=28.30 Aligned_cols=187 Identities=14% Similarity=0.091 Sum_probs=94.1
Q ss_pred cceEEEEECCCC-----------CcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCC-cccEEEEEEcc
Q 021160 35 IRLNAIVIDPRN-----------PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN-NIHITGLAYSN 102 (316)
Q Consensus 35 ~~v~~~~~~~~~-----------~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 102 (316)
...+.+.|+... +..++.+++||+|.-|...-.... .+..+ ..+-... ..-...+++..
T Consensus 77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~-------~~~~~--~~~d~s~~gavYkGLAi~~ 147 (336)
T TIGR03118 77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTR-------MTRAE--IVVDASQQGNVYKGLAVGP 147 (336)
T ss_pred CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCccc-------ccccE--EEEccCCCcceeeeeEEee
Confidence 456677776432 123677789999999986433210 00000 0010111 22234455554
Q ss_pred C--CCeEEEe--cCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEE
Q 021160 103 T--SELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 178 (316)
Q Consensus 103 ~--~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~ 178 (316)
. +.+|... ..++|-+||-.-.....+..+.-..++...-..-+..-...-.|+-.. ..++...=+.|..-|.|-+
T Consensus 148 ~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~-qd~~~~d~v~G~G~G~Vdv 226 (336)
T TIGR03118 148 TGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQ-QDADRNDEVAGAGLGYVNV 226 (336)
T ss_pred cCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEe-cCCcccccccCCCcceEEE
Confidence 3 4555554 489999998654311111111110011000000000000000122111 1344444455666789999
Q ss_pred EeccCCeeEEEeec--CccceEEEEEcC------CCCeEEEEeCCCcEEEecCCCCC-CCCCC
Q 021160 179 WKKKGGKLVRLMVG--DRHVVNQLEPHP------HIPMFATCGIEKTVKLWAPMPTD-FPPLP 232 (316)
Q Consensus 179 wd~~~~~~~~~~~~--~~~~v~~~~~~p------~~~~l~s~~~d~~i~iwd~~~~~-~~~~~ 232 (316)
||+. |++++++.. .-...+.|+..| .+.+|+.--.||+|..+|..++. +-.+.
T Consensus 227 Fd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 227 FTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred EcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 9987 888888742 223456677766 35566666679999999998776 44443
No 466
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.39 E-value=20 Score=25.52 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=65.7
Q ss_pred EEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEcc---CC--CeEEEecCC
Q 021160 39 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN---TS--ELLISYNDE 113 (316)
Q Consensus 39 ~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~--~~l~s~~d~ 113 (316)
.-.|.... ..|++++.-|+|.|++.......... ...++..+ .-...|++++--+ +. ..|+.+...
T Consensus 3 iGkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~L-------Nin~~italaaG~l~~~~~~D~LliGt~t 73 (136)
T PF14781_consen 3 IGKFDGVH-PCLACATTGGKVFIHNPHERGQRTGR-QDSDISFL-------NINQEITALAAGRLKPDDGRDCLLIGTQT 73 (136)
T ss_pred EEEeCCCc-eeEEEEecCCEEEEECCCcccccccc-ccCceeEE-------ECCCceEEEEEEecCCCCCcCEEEEeccc
Confidence 34677766 47778888899999988654311100 11222222 1134566665433 32 377888899
Q ss_pred cEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEe--cC-CCcEEEEeccCCeEEEEeccCCeeE
Q 021160 114 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF--GP-NDEYVMSGSDCGHLFIWKKKGGKLV 187 (316)
Q Consensus 114 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~~~~l~~~~~dg~v~~wd~~~~~~~ 187 (316)
.+..||+... .. ..++.-.+. +.++.+- .. ...++++|+ +-.|.-||.+..+..
T Consensus 74 ~llaYDV~~N----------------~d-~Fyke~~DG--vn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 74 SLLAYDVENN----------------SD-LFYKEVPDG--VNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIF 130 (136)
T ss_pred eEEEEEcccC----------------ch-hhhhhCccc--eeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEE
Confidence 9999999876 12 222333333 6666551 22 334455444 455666666544433
No 467
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.16 E-value=0.24 Score=42.66 Aligned_cols=133 Identities=7% Similarity=0.099 Sum_probs=83.8
Q ss_pred CcccEEEEEEccCCC-eEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEE-
Q 021160 91 NNIHITGLAYSNTSE-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM- 168 (316)
Q Consensus 91 ~~~~i~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~- 168 (316)
+-.......|-|.+. +++++.+..+..||-... ..... ..+ .....++| ..++..++
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq-----------------~~le~-n~t--g~aldm~w-Dkegdvlav 91 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQ-----------------VILEL-NPT--GKALDMAW-DKEGDVLAV 91 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhhcc-----------------eeccc-CCc--hhHhhhhh-ccccchhhh
Confidence 334444566888775 666677888888886443 11111 122 22566777 66666544
Q ss_pred EeccCCeEEEEeccCCeeEEEee---cCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCCCCCcccceeeeec
Q 021160 169 SGSDCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQ 244 (316)
Q Consensus 169 ~~~~dg~v~~wd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~ 244 (316)
.+-..+.+.+||+.+... +.+. .|.... +.|++..+.++.+...+.+.|++-...+ ...+..|.....+.+ +
T Consensus 92 lAek~~piylwd~n~eyt-qqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~a-v 167 (615)
T KOG2247|consen 92 LAEKTGPIYLWDVNSEYT-QQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIA-V 167 (615)
T ss_pred hhhcCCCeeechhhhhhH-HHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEE-e
Confidence 455688999999875432 1221 122222 7899988888888899999999987766 444444777777776 4
Q ss_pred CCCC
Q 021160 245 GRED 248 (316)
Q Consensus 245 ~~~~ 248 (316)
..++
T Consensus 168 ~lEd 171 (615)
T KOG2247|consen 168 TLED 171 (615)
T ss_pred cccc
Confidence 4443
No 468
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=78.90 E-value=35 Score=28.05 Aligned_cols=115 Identities=8% Similarity=-0.033 Sum_probs=69.2
Q ss_pred eeeEEEecCCCcEEEEeccCCeEEEEeccCCee---EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 021160 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL---VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP 230 (316)
Q Consensus 154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~---~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~ 230 (316)
+..+.+ + +++...+..+.-++++|+.+... +..+.. .+-- -.|.-.|++...+..|.-+-+.|+.....-.
T Consensus 89 ~~Dv~v-s--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gya--ygv~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 89 FADVRV-S--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYA--YGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hheeEe-c--ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceE--EEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 667776 3 67788888888899999876543 333322 1222 3344467887777766667788887665333
Q ss_pred CCCCcccceee-eecCCCCceeEEecCCCeEEEEEecccCcceeE
Q 021160 231 LPDNAEKIMKA-NKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR 274 (316)
Q Consensus 231 ~~~~~~~~~~~-~~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~ 274 (316)
+.+.-...-.. -...-.+++......|+-+++.|+.....+++.
T Consensus 163 lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli 207 (370)
T COG5276 163 LAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLI 207 (370)
T ss_pred eeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEE
Confidence 33211111000 001113556666667888999999998888776
No 469
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.88 E-value=49 Score=32.71 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=29.4
Q ss_pred CCccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCc
Q 021160 32 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH 68 (316)
Q Consensus 32 gh~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~ 68 (316)
|-+.....++|+|.. .++|.|+..|.|+++....-+
T Consensus 33 G~~~~~~~~afD~~q-~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQ-GLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCCCCcceeecccc-ceEEEEEecccEEEecccceE
Confidence 445567789999988 899999999999999876433
No 470
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=78.77 E-value=20 Score=26.91 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=23.3
Q ss_pred ccEEEEEEccCC-----C-eEEE-ecCCcEEEEEcCC
Q 021160 93 IHITGLAYSNTS-----E-LLIS-YNDELVYLFEKNM 122 (316)
Q Consensus 93 ~~i~~~~~~~~~-----~-~l~s-~~d~~i~iwd~~~ 122 (316)
..+..++|||.| + +|+. ..++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999965 2 5665 5899999998653
No 471
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=78.32 E-value=23 Score=30.90 Aligned_cols=190 Identities=9% Similarity=0.042 Sum_probs=96.7
Q ss_pred ccEEEEEEccCCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC-cCC--ceee-eEEEecCCCcEEE
Q 021160 93 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNS--QTVK-GVNFFGPNDEYVM 168 (316)
Q Consensus 93 ~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~i~-~~~~~~~~~~~l~ 168 (316)
..+..+-..|+|+.+..-...++.++++.+.. -..+.+... .+. ..|+ ++.. -..|.-++
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~---------------l~~rkl~~dspg~~~~~Vte~l~l-L~Gg~SLL 284 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTGSELVVALLDKRS---------------LQIRKLVDDSPGDSRHQVTEQLYL-LSGGFSLL 284 (733)
T ss_pred cchHhhEECCCCCEEEEecCCeEEEEeecccc---------------cchhhhhhcCCCchHHHHHHHHHH-HhCceeEE
Confidence 45667778899996666445788888887652 011111111 110 0022 1111 22456678
Q ss_pred EeccCCeEEEEe-ccC-Cee----EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCCCCcccceeee
Q 021160 169 SGSDCGHLFIWK-KKG-GKL----VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKAN 242 (316)
Q Consensus 169 ~~~~dg~v~~wd-~~~-~~~----~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 242 (316)
.++.||-|.-|- .+. +++ ++.++-....+..+.-..+.+-+++-...|++..+.....+..-+....+ ..+..
T Consensus 285 v~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~-~~~~~ 363 (733)
T COG4590 285 VVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ-APQLV 363 (733)
T ss_pred EEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc-Cccee
Confidence 888899887664 332 221 22222112333333322233447777888888877655544221111111 12344
Q ss_pred ecCCCCceeEEecCCCeEEEEEecccCcceeEEeecccccccccCCCCeEEEEeccCCCC
Q 021160 243 KQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDA 302 (316)
Q Consensus 243 ~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 302 (316)
..++...++++- ..|.++++.+++++..+...---...+.++..+. -|+|..+...+
T Consensus 364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~PeiswsaLWqkvWYEsYpeP--ayVWQStaAt~ 420 (733)
T COG4590 364 AMSPNQAYLLSE-DQGKIRLAQLENRNPEISWSALWQKVWYESYPEP--AYVWQSTAATD 420 (733)
T ss_pred eeCcccchheee-cCCceEEEEecCCCCCccHHHhhhhhhhhcCCCc--hheeecccccc
Confidence 456666666553 4577899998877554322111123344445555 67776655444
No 472
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=78.20 E-value=36 Score=27.89 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=36.4
Q ss_pred CcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCCCeEEEec-------CCcEEEEEcCCC
Q 021160 57 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-------DELVYLFEKNMG 123 (316)
Q Consensus 57 g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-------d~~i~iwd~~~~ 123 (316)
..|.+||..+.++... ..+-.+.|+.+.|..+.+++++|. ...+..||+.+.
T Consensus 16 ~~lC~yd~~~~qW~~~---------------g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSP---------------GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CEEEEEECCCCEeecC---------------CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 4589999988775311 123467899999997777777753 234778888765
No 473
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=76.52 E-value=51 Score=28.68 Aligned_cols=111 Identities=9% Similarity=-0.012 Sum_probs=61.1
Q ss_pred EEEEEEccCCCeEEEecCCcEEE-EEcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccC
Q 021160 95 ITGLAYSNTSELLISYNDELVYL-FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC 173 (316)
Q Consensus 95 i~~~~~~~~~~~l~s~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 173 (316)
...+..++++.+++.+..|.+.. ||--. ..-+..... ....+..+.+ .+++..++++ ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~-----------------~~W~~~~~~-~~~~l~~v~~-~~dg~l~l~g-~~ 300 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ-----------------PYWQPHNRA-SARRIQNMGW-RADGGLWLLT-RG 300 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCC-----------------cceEEecCC-CccceeeeeE-cCCCCEEEEe-CC
Confidence 34456677777777776665443 33211 011112211 1234888988 8888887766 45
Q ss_pred CeEEEEeccCCe-----eEEEeec--CccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 174 GHLFIWKKKGGK-----LVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 174 g~v~~wd~~~~~-----~~~~~~~--~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
|.+ ++....++ ....... ....+.++.|.+++..+++| ..|.+....-....
T Consensus 301 G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~G~t 359 (398)
T PLN00033 301 GGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDGGKS 359 (398)
T ss_pred ceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCCCcc
Confidence 655 34444443 1222221 12358889999887766555 57877776544433
No 474
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=76.08 E-value=9.5 Score=20.07 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=22.4
Q ss_pred EEEEeccCCeEEEEeccCCeeEEEeec
Q 021160 166 YVMSGSDCGHLFIWKKKGGKLVRLMVG 192 (316)
Q Consensus 166 ~l~~~~~dg~v~~wd~~~~~~~~~~~~ 192 (316)
.+..++.+|.++-.|.++|+.+-.+..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 356669999999999999999887753
No 475
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=75.45 E-value=9.9 Score=19.95 Aligned_cols=29 Identities=7% Similarity=0.066 Sum_probs=18.9
Q ss_pred ccceEEEEECCCCCcEEEEEecC--CcEEEE
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSD--EYARVY 62 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~d--g~v~~w 62 (316)
...-...+|+|+|..++.++..+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34567889999995555555566 666665
No 476
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=75.16 E-value=37 Score=26.40 Aligned_cols=104 Identities=9% Similarity=0.015 Sum_probs=53.8
Q ss_pred cCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC-CCCC--CCCcccceeeeecCC-C
Q 021160 172 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPL--PDNAEKIMKANKQGR-E 247 (316)
Q Consensus 172 ~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~-~~~~--~~~~~~~~~~~~~~~-~ 247 (316)
.+|.-..+|..+-+.+..+. ..+.-+.++- +++.|..+....+++.-|+++.. ..++ .....++..++...- +
T Consensus 109 ~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~Vd 185 (262)
T COG3823 109 KEGVAFKYDADTLEELGRFS-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVD 185 (262)
T ss_pred ccceeEEEChHHhhhhcccc-cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeec
Confidence 47888899998888776664 2334455554 44445555545567766765533 1111 112223323332221 4
Q ss_pred CceeEEecCCCeEEEEEecccCcceeEEeec
Q 021160 248 DHSRITLTPDVIMHVLRLQRRQTLAYRERRY 278 (316)
Q Consensus 248 ~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~ 278 (316)
+...+-.-.+..|...+..+++...+.+.++
T Consensus 186 G~lyANVw~t~~I~rI~p~sGrV~~widlS~ 216 (262)
T COG3823 186 GELYANVWQTTRIARIDPDSGRVVAWIDLSG 216 (262)
T ss_pred cEEEEeeeeecceEEEcCCCCcEEEEEEccC
Confidence 4445544445555555555555555554443
No 477
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=73.40 E-value=1e+02 Score=30.77 Aligned_cols=153 Identities=12% Similarity=0.135 Sum_probs=82.3
Q ss_pred cEEEEEec---------CCcEEEEeCcCCcccCCCCCCCCceeccccccc-CCCcccEEEEEEccCCCeEEEecCCcEEE
Q 021160 48 NYFAVGGS---------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELLISYNDELVYL 117 (316)
Q Consensus 48 ~~l~~g~~---------dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~d~~i~i 117 (316)
.++++|.. .|.+.++|+-. +.+. ...|......+.+. ...+++|..++ .-+| +|+++...+|.+
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIe--VVPe--pgkP~t~~KlKel~~eE~KGtVsavc-eV~G-~l~~~~GqKI~v 1120 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIE--VVPE--PGKPFTKNKLKELYIEEQKGTVSAVC-EVRG-HLLSSQGQKIIV 1120 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEE--ecCC--CCCCcccceeeeeehhhcccceEEEE-Eecc-EEEEccCcEEEE
Confidence 47777742 48899999752 1111 11222222222222 22356666664 2234 566777788999
Q ss_pred EEcCCCCCCCCccCCccccccCCCc-ceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCC-eeEEEeec--C
Q 021160 118 FEKNMGLGPSPLSLSPEDLQKREEP-QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVG--D 193 (316)
Q Consensus 118 wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~-~~~~~~~~--~ 193 (316)
|+++... ..+ -.|-... ..+.++. --.++|+.|.--..|.+.-.+.. ..+..+.. .
T Consensus 1121 ~~l~r~~---------------~ligVaFiD~~--~yv~s~~---~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~ 1180 (1366)
T KOG1896|consen 1121 RKLDRDS---------------ELIGVAFIDLP--LYVHSMK---VVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFE 1180 (1366)
T ss_pred EEeccCC---------------cceeeEEeccc--eeEEehh---hhhhheehhhhhhceEEEEEccCceEEEEeecCCc
Confidence 9995441 111 1121111 1133332 23667888877777777666532 22222221 1
Q ss_pred ccceEEEEEcCCCCe--EEEEeCCCcEEEecCCCC
Q 021160 194 RHVVNQLEPHPHIPM--FATCGIEKTVKLWAPMPT 226 (316)
Q Consensus 194 ~~~v~~~~~~p~~~~--l~s~~~d~~i~iwd~~~~ 226 (316)
.-.+.++.|--+|.. ++.+..|+.|++|-....
T Consensus 1181 ~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1181 PLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred hhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCC
Confidence 235777778766654 788889999988765443
No 478
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=73.29 E-value=64 Score=28.28 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=34.0
Q ss_pred EEEEeccCCeEEEEeccCCeeEEEeecCccceEEEE---EcCCCCeEEEEeCCCcEEEecCCCC
Q 021160 166 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLE---PHPHIPMFATCGIEKTVKLWAPMPT 226 (316)
Q Consensus 166 ~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~---~~p~~~~l~s~~~d~~i~iwd~~~~ 226 (316)
.++.++.++.+.+|.= .+++........+| ++. |..-...|++-+.+|.+.+-=+-+.
T Consensus 302 ~llV~t~t~~LlVy~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 302 NLLVGTHTGTLLVYED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EEEEEecCCeEEEEeC--CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 5888899999999863 33333333222222 232 2223345778888998887655443
No 479
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=73.05 E-value=67 Score=28.47 Aligned_cols=31 Identities=10% Similarity=0.131 Sum_probs=25.1
Q ss_pred ccEEEEEEccCCCeEEEec-CCcEEEEEcCCC
Q 021160 93 IHITGLAYSNTSELLISYN-DELVYLFEKNMG 123 (316)
Q Consensus 93 ~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~ 123 (316)
..-+.|+|.|+|++|++-. .|.|++++..++
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 3567899999999999976 699999986543
No 480
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=71.31 E-value=62 Score=27.30 Aligned_cols=66 Identities=9% Similarity=0.150 Sum_probs=43.5
Q ss_pred eeeEEEec------CCCcEEEEeccCCeEEEEeccCCeeEE---E-eecCccceEEEEEcCCCCeEEEEeCCCcEE
Q 021160 154 VKGVNFFG------PNDEYVMSGSDCGHLFIWKKKGGKLVR---L-MVGDRHVVNQLEPHPHIPMFATCGIEKTVK 219 (316)
Q Consensus 154 i~~~~~~~------~~~~~l~~~~~dg~v~~wd~~~~~~~~---~-~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~ 219 (316)
+..+.|.. -.+.++++.-..+.|....+..+..+. . +.....++..+++.|||.+.++-..+|.|.
T Consensus 255 p~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 255 PTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 66676632 145677777767888888887553322 2 223444799999999999988777788764
No 481
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=69.93 E-value=45 Score=29.21 Aligned_cols=163 Identities=14% Similarity=0.083 Sum_probs=85.4
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCc----ccEE-EEEEccCCC-eE
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN----IHIT-GLAYSNTSE-LL 107 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~-~~~~~~~~~-~l 107 (316)
...|..+-..|++ +.+..-+. .++.++++.+..+.. +.+..... ..|+ .+..-..|. ++
T Consensus 220 ~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~-------------rkl~~dspg~~~~~Vte~l~lL~Gg~SLL 284 (733)
T COG4590 220 FSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQI-------------RKLVDDSPGDSRHQVTEQLYLLSGGFSLL 284 (733)
T ss_pred ccchHhhEECCCC-CEEEEecC-CeEEEEeecccccch-------------hhhhhcCCCchHHHHHHHHHHHhCceeEE
Confidence 4567788899999 55555443 678888887654311 11101100 1111 111122233 55
Q ss_pred EEecCCcEEEE-EcCCCCCCCCccCCccccccCCCcceeeCCcCCceeeeEEEecCCCcEEEEeccCCeEEEEeccCCee
Q 021160 108 ISYNDELVYLF-EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 186 (316)
Q Consensus 108 ~s~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~ 186 (316)
+...||.|.-| |++....+.- ..++.++-...+ +..+.- ..+.+-+++-..+|++..+.....+.
T Consensus 285 v~~~dG~vsQWFdvr~~~~p~l-----------~h~R~f~l~pa~--~~~l~p-e~~rkgF~~l~~~G~L~~f~st~~~~ 350 (733)
T COG4590 285 VVHEDGLVSQWFDVRRDGQPHL-----------NHIRNFKLAPAE--VQFLLP-ETNRKGFYSLYRNGTLQSFYSTSEKL 350 (733)
T ss_pred EEcCCCceeeeeeeecCCCCcc-----------eeeeccccCccc--ceeecc-ccccceEEEEcCCCceeeeecccCcc
Confidence 55678887766 6655421100 111222211111 322221 22334456667778877776554443
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 187 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 187 ~~~~~~~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
+..-.. -..+.-+++||++.++++-. .|.|+++.+++..
T Consensus 351 lL~~~~-~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 351 LLFERA-YQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred eehhhh-hcCcceeeeCcccchheeec-CCceEEEEecCCC
Confidence 322222 23566789999999987754 6789999887654
No 482
>PLN02193 nitrile-specifier protein
Probab=69.55 E-value=83 Score=28.09 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=16.3
Q ss_pred cEEEEEecC-----CcEEEEeCcCCccc
Q 021160 48 NYFAVGGSD-----EYARVYDIRKCHWY 70 (316)
Q Consensus 48 ~~l~~g~~d-----g~v~~wd~~~~~~~ 70 (316)
.+++.|+.+ ..+..||+.+.++.
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~ 257 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWK 257 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCCEEE
Confidence 677777754 35788898877654
No 483
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=69.25 E-value=1.1e+02 Score=29.36 Aligned_cols=25 Identities=4% Similarity=-0.158 Sum_probs=18.7
Q ss_pred cEEEEEecCCcEEEEeCcCCcccCC
Q 021160 48 NYFAVGGSDEYARVYDIRKCHWYSP 72 (316)
Q Consensus 48 ~~l~~g~~dg~v~~wd~~~~~~~~~ 72 (316)
..++.++.++.|.-.|..+++.+..
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~ 219 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWK 219 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEE
Confidence 4666677788899999988885543
No 484
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=69.01 E-value=20 Score=23.47 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=27.8
Q ss_pred eccCCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEE
Q 021160 170 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC 212 (316)
Q Consensus 170 ~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~ 212 (316)
+..+|.+.-||+.+++..-.+.+- ...+.++.+|++..++.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEE
Confidence 344678889999988865444432 356889999999986554
No 485
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=68.28 E-value=12 Score=18.07 Aligned_cols=24 Identities=4% Similarity=0.047 Sum_probs=14.0
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEE
Q 021160 197 VNQLEPHPHIPMFATCGIEKTVKL 220 (316)
Q Consensus 197 v~~~~~~p~~~~l~s~~~d~~i~i 220 (316)
...+++.++|+++++-+....|.+
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEE
Confidence 345666666666666555555554
No 486
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=67.97 E-value=1.2e+02 Score=29.22 Aligned_cols=136 Identities=12% Similarity=0.085 Sum_probs=76.8
Q ss_pred CcccEEEEEEc---cC----CCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCC-cCCceeeeEEEecC
Q 021160 91 NNIHITGLAYS---NT----SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGP 162 (316)
Q Consensus 91 ~~~~i~~~~~~---~~----~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~ 162 (316)
-..+|..|.|. .. .++|+.-....+.|+...-.............+.. .++..+..+ .++....+++|++.
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~-~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDP-NPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCcccccc-ceeEEechhhcCCCccceEEeccC
Confidence 36789999998 31 13666656777888874332110000000000000 122233211 12233788999555
Q ss_pred CCcEEEEeccCCeEEEEeccCCe-----eEEEeecCc----------cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 163 NDEYVMSGSDCGHLFIWKKKGGK-----LVRLMVGDR----------HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 163 ~~~~l~~~~~dg~v~~wd~~~~~-----~~~~~~~~~----------~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
+...||.....|...+|++.... .+.....+. +....+.|.++-..|+.++ ...+.++|+.+..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCCCC
Confidence 67789999999999999992111 111111111 2344788988877877776 5678899998775
Q ss_pred C
Q 021160 228 F 228 (316)
Q Consensus 228 ~ 228 (316)
.
T Consensus 236 ~ 236 (765)
T PF10214_consen 236 Q 236 (765)
T ss_pred c
Confidence 3
No 487
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=67.18 E-value=34 Score=32.61 Aligned_cols=82 Identities=15% Similarity=-0.012 Sum_probs=52.5
Q ss_pred ccceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCC----CCCCCceecccccccCCCcccEEEEEEccCCCeEEE
Q 021160 34 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI----SSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 109 (316)
Q Consensus 34 ~~~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 109 (316)
.+.|.++....-+ .+++..-.||.|.++|..+.+..... .....+.......+.-....++..++|||.+..++.
T Consensus 259 ~~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ 337 (753)
T ss_pred CCeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence 4568888887777 78999999999999999988755443 111222222111111112225667899999986666
Q ss_pred -ecCCcEE
Q 021160 110 -YNDELVY 116 (316)
Q Consensus 110 -~~d~~i~ 116 (316)
..++.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 5677755
No 488
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=66.74 E-value=45 Score=26.87 Aligned_cols=75 Identities=8% Similarity=0.130 Sum_probs=0.0
Q ss_pred CccceEEEEE------CCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEc-cCCC
Q 021160 33 NSIRLNAIVI------DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSE 105 (316)
Q Consensus 33 h~~~v~~~~~------~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 105 (316)
+...|+||+- .++....++.|.++|.|.+.|...-........+.....+ +..-.|. -+.+
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i------------~~~G~~devdyR 242 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFI------------SVSGQYDEVDYR 242 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEE------------EEEeeeeccceE
Q ss_pred eEEEecCCcEEEEE
Q 021160 106 LLISYNDELVYLFE 119 (316)
Q Consensus 106 ~l~s~~d~~i~iwd 119 (316)
+++++.||.|++..
T Consensus 243 I~Va~Rdg~iy~ir 256 (257)
T PF14779_consen 243 IVVACRDGKIYTIR 256 (257)
T ss_pred EEEEeCCCEEEEEe
No 489
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=66.73 E-value=1.4e+02 Score=29.50 Aligned_cols=123 Identities=11% Similarity=0.135 Sum_probs=61.9
Q ss_pred CCeEEEEec-cCCeeEEEeecC--ccceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC---CCCCcccceeeeecCC
Q 021160 173 CGHLFIWKK-KGGKLVRLMVGD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP---LPDNAEKIMKANKQGR 246 (316)
Q Consensus 173 dg~v~~wd~-~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~ 246 (316)
+|.++.|++ +.|+.+..+..- .+.| .+.+|...++++| ....+++||+-.+++.+ +.-....+.... .
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iq---t 984 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQ---T 984 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEe---e
Confidence 455777774 345533333211 1233 4567766655444 35789999998766221 111122222222 2
Q ss_pred CCceeEEecCCCeEEEEEecc--cCcceeE----------EeecccccccccCCCCeEEEEeccCCC
Q 021160 247 EDHSRITLTPDVIMHVLRLQR--RQTLAYR----------ERRYNAADFESDEEEGETYLLGFSDSD 301 (316)
Q Consensus 247 ~~~~~~s~~~d~~~~~w~~~~--~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~ 301 (316)
...+++.+...-.+.+..-++ .+...+. ..--+...+++.+.-|-++++......
T Consensus 985 ~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 985 YGARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred cceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEECCCcc
Confidence 233455555444444444333 2222221 223356677777888888888776544
No 490
>PLN02153 epithiospecifier protein
Probab=66.52 E-value=79 Score=26.68 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=15.7
Q ss_pred cEEEEEecC-----CcEEEEeCcCCccc
Q 021160 48 NYFAVGGSD-----EYARVYDIRKCHWY 70 (316)
Q Consensus 48 ~~l~~g~~d-----g~v~~wd~~~~~~~ 70 (316)
.+++.|+.+ ..+.+||+.+.++.
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 114 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNEWT 114 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCEEE
Confidence 677777753 35778888877653
No 491
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=63.99 E-value=1.1e+02 Score=27.28 Aligned_cols=60 Identities=13% Similarity=0.032 Sum_probs=36.3
Q ss_pred ceEEEEECCCCCcEEEEEecCCcEEEEeCcCCcccCCCCCCCCceecccccccCCCcccEEEEEEccCC
Q 021160 36 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS 104 (316)
Q Consensus 36 ~v~~~~~~~~~~~~l~~g~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 104 (316)
.-..|+|.|++ ++|++--..|.|++++..++... .+..+. .............|+++|+-
T Consensus 31 ~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~-------~~~~l~-~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDN-QLWVTERATGKILRVNPETGEVK-------VVFTLP-EIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCC-eEEEEEecCCEEEEEeCCCCcee-------eeecCC-ceeccCCCCceeeEEECCCc
Confidence 46799999998 66666544699999986544310 111110 01111125678899999874
No 492
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=63.29 E-value=37 Score=22.21 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=24.2
Q ss_pred ceeeEEEEeeCCCcceEEEeccccccccCCCCccceEEEEECCCCCcEEEEE
Q 021160 2 VLFNMLFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG 53 (316)
Q Consensus 2 ~g~v~vwd~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~~g 53 (316)
.|.|..||..+++..-+..... --+.+++++++ ..++.+
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~------------fpNGVals~d~-~~vlv~ 74 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLY------------FPNGVALSPDE-SFVLVA 74 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEES------------SEEEEEE-TTS-SEEEEE
T ss_pred CcCEEEEECCCCeEEEehhCCC------------ccCeEEEcCCC-CEEEEE
Confidence 4778888888876544443322 35789999999 544443
No 493
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=61.44 E-value=18 Score=19.10 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=16.0
Q ss_pred CCcEEEEeccCCeEEEEeccC
Q 021160 163 NDEYVMSGSDCGHLFIWKKKG 183 (316)
Q Consensus 163 ~~~~l~~~~~dg~v~~wd~~~ 183 (316)
.+..++.++.+|.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 366888999999999998763
No 494
>PLN02193 nitrile-specifier protein
Probab=60.39 E-value=1.3e+02 Score=26.96 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=34.5
Q ss_pred CCcEEEEeccCC-----eEEEEeccCCeeEEEe-----ecCccceEEEEEcCCCCeEEEEeCC----CcEEEecCCCCCC
Q 021160 163 NDEYVMSGSDCG-----HLFIWKKKGGKLVRLM-----VGDRHVVNQLEPHPHIPMFATCGIE----KTVKLWAPMPTDF 228 (316)
Q Consensus 163 ~~~~l~~~~~dg-----~v~~wd~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~l~s~~~d----~~i~iwd~~~~~~ 228 (316)
++++.+.|+.++ .+..||+.+.+-...- ....... .++. -++++++.++.+ ..+.+||+.+.+.
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 456666776543 4677887765432111 0111111 1222 256676666655 4588999988763
No 495
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=60.38 E-value=44 Score=21.70 Aligned_cols=50 Identities=10% Similarity=0.232 Sum_probs=30.9
Q ss_pred CCeEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEE-eCCCcEEEecCCC
Q 021160 173 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMP 225 (316)
Q Consensus 173 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s~-~~d~~i~iwd~~~ 225 (316)
-+.|..||....+ .....-...+.+.++|++++|..+ ...+.|++|....
T Consensus 35 ~~~Vvyyd~~~~~---~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 35 WGNVVYYDGKEVK---VVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEEeCCEeE---EeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 3456666654322 222222355789999999885544 5778999997653
No 496
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=60.37 E-value=96 Score=29.60 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=44.6
Q ss_pred eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeec---CccceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 021160 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 224 (316)
Q Consensus 154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~---~~~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~ 224 (316)
+.+.+| . .-++.++.+|.|.++...+......+.. |...|+++...-++-+++-++.| .+++++.+
T Consensus 629 vrsla~-~---ed~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhte 697 (925)
T KOG3522|consen 629 VRSLAF-Q---EDFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTE 697 (925)
T ss_pred ccchhh-h---hceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEeccc
Confidence 777776 2 2356677899999999887666555544 44678999888777666666544 44544444
No 497
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=59.71 E-value=1.1e+02 Score=26.13 Aligned_cols=104 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred CCCeEEEecCCcEEEEEcCCCCCCCCccCCccccccCCCcceeeCCc--CCceeeeEEEecCCCcEEEEeccCCeEEEEe
Q 021160 103 TSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 180 (316)
Q Consensus 103 ~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~v~~wd 180 (316)
+++.++...+|.|.-.|.+++ ..+....... .. +..-.+ -.+|+ ++.++.++.++.+|
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g----------------~~~W~~~~~~~~~~--~~~~~~-~~~G~-i~~g~~~g~~y~ld 127 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTG----------------LVKWSYPLLGAVAQ--LSGPIL-GSDGK-IYVGSWDGKLYALD 127 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCC----------------cEEecccCcCccee--ccCceE-EeCCe-EEEecccceEEEEE
Q ss_pred ccCCeeEEEeecCc-cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 021160 181 KKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 227 (316)
Q Consensus 181 ~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~s~~~d~~i~iwd~~~~~ 227 (316)
..+|+.+-...... -.+.....-.++..++.. .++.+.-.+..+++
T Consensus 128 ~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~ 174 (370)
T COG1520 128 ASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGT-DDGHLYALNADTGT 174 (370)
T ss_pred CCCCcEEEEEecCCCeEEecCcEEcCcEEEEec-CCCeEEEEEccCCc
No 498
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=59.22 E-value=92 Score=24.97 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=23.5
Q ss_pred EecCCCcEEEEeccCCeEEEEeccCCeeEEEeec
Q 021160 159 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 192 (316)
Q Consensus 159 ~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~ 192 (316)
|.-|+|++++.+..+ -.|||..+.+.+..++.
T Consensus 176 ~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 176 HLLPDGNLFIFANRG--SIIYDYKTNTVVRTLPD 207 (243)
T ss_pred EEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCCC
Confidence 347999999888765 44678888877666654
No 499
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=58.86 E-value=1.1e+02 Score=25.54 Aligned_cols=70 Identities=13% Similarity=0.305 Sum_probs=50.1
Q ss_pred eeeEEEecCCCcEEEEeccCCeEEEEeccCCeeEEEeecCccc-----eEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 021160 154 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV-----VNQLEPHPHIPMFATCGIEKTVKLWAPM 224 (316)
Q Consensus 154 i~~~~~~~~~~~~l~~~~~dg~v~~wd~~~~~~~~~~~~~~~~-----v~~~~~~p~~~~l~s~~~d~~i~iwd~~ 224 (316)
+++|.. ..+|.+|++.-.-..|.+.+.++|+.+-.+.+.... -...+|-.+-+++-....++.|.++|-.
T Consensus 146 iNsV~~-~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 146 INSVDK-DDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred eeeeee-cCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 778887 788999999999999999999999999888665221 1113332233334444678899999974
No 500
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=58.12 E-value=1.1e+02 Score=25.67 Aligned_cols=116 Identities=14% Similarity=0.218 Sum_probs=64.8
Q ss_pred cccEEEEEEccC-CCeEEEecCCc------EEEEEcCCCCCCCCccCCccc---cccCCCcceeeCCcCCceeeeEEEec
Q 021160 92 NIHITGLAYSNT-SELLISYNDEL------VYLFEKNMGLGPSPLSLSPED---LQKREEPQVYSGHRNSQTVKGVNFFG 161 (316)
Q Consensus 92 ~~~i~~~~~~~~-~~~l~s~~d~~------i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~ 161 (316)
-+.+..+.+.++ +.+++.+.++. ++.+++..... ....+.... +.. ..-..+.... -...++++ +
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~-~~G~~~~~~~--~D~Egi~~-~ 93 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRD-PDGQPFPKNG--LDPEGIAV-P 93 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccC-CCCCcCCcCC--CChhHeEE-e
Confidence 356788999854 45666677777 66666654110 000000000 000 0000010000 12567888 8
Q ss_pred CCCcEEEEeccC------CeEEEEeccCCeeEEEee---------------cCccceEEEEEcCCCCeEEEEe
Q 021160 162 PNDEYVMSGSDC------GHLFIWKKKGGKLVRLMV---------------GDRHVVNQLEPHPHIPMFATCG 213 (316)
Q Consensus 162 ~~~~~l~~~~~d------g~v~~wd~~~~~~~~~~~---------------~~~~~v~~~~~~p~~~~l~s~~ 213 (316)
+++.++++.-.+ ..|+.++.. |+.+..+. ......-+|+++|+++.|.++.
T Consensus 94 ~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 94 PDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred cCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 888888877667 788888876 66554431 1234678899999999655543
Done!