Query 021161
Match_columns 316
No_of_seqs 295 out of 1899
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:04:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1099 SAM-dependent methyltr 100.0 2E-103 3E-108 703.0 22.3 292 1-306 1-292 (294)
2 COG0293 FtsJ 23S rRNA methylas 100.0 8.6E-55 1.9E-59 388.5 21.6 197 5-213 9-205 (205)
3 KOG4589 Cell division protein 100.0 1.7E-49 3.6E-54 346.2 18.6 197 6-214 34-231 (232)
4 KOG1098 Putative SAM-dependent 100.0 4.3E-46 9.3E-51 369.3 12.5 212 1-224 1-215 (780)
5 PRK11188 rrmJ 23S rRNA methylt 100.0 1E-42 2.2E-47 314.2 21.7 194 6-211 16-209 (209)
6 PF01728 FtsJ: FtsJ-like methy 100.0 4E-42 8.7E-47 302.0 10.5 177 21-209 1-181 (181)
7 TIGR00438 rrmJ cell division p 100.0 1.2E-32 2.5E-37 243.6 22.8 188 10-209 1-188 (188)
8 KOG3674 FtsJ-like RNA methyltr 99.8 7.2E-21 1.6E-25 185.6 9.0 192 20-217 108-326 (696)
9 KOG3673 FtsJ-like RNA methyltr 99.8 4.4E-21 9.6E-26 188.8 6.7 194 17-212 226-447 (845)
10 PF01209 Ubie_methyltran: ubiE 99.5 5.7E-14 1.2E-18 129.1 8.1 117 40-187 46-173 (233)
11 COG2226 UbiE Methylase involve 99.4 4.2E-13 9.1E-18 123.5 10.0 106 40-177 50-166 (238)
12 PRK11760 putative 23S rRNA C24 99.4 2.3E-12 5E-17 123.6 12.3 88 18-128 181-279 (357)
13 PRK14902 16S rRNA methyltransf 99.4 1.5E-12 3.2E-17 130.0 10.8 131 40-189 249-406 (444)
14 PTZ00146 fibrillarin; Provisio 99.4 1.5E-11 3.3E-16 116.2 16.3 123 39-191 130-271 (293)
15 COG4123 Predicted O-methyltran 99.4 5.4E-12 1.2E-16 116.6 13.0 150 40-212 43-214 (248)
16 TIGR00446 nop2p NOL1/NOP2/sun 99.4 4.9E-12 1.1E-16 118.1 12.6 124 40-183 70-218 (264)
17 PRK14901 16S rRNA methyltransf 99.4 9.7E-12 2.1E-16 123.9 14.0 128 40-183 251-403 (434)
18 PRK14903 16S rRNA methyltransf 99.3 1.1E-11 2.4E-16 123.5 13.8 125 40-183 236-385 (431)
19 COG0144 Sun tRNA and rRNA cyto 99.3 1.5E-11 3.2E-16 119.7 12.0 128 40-183 155-307 (355)
20 PRK11933 yebU rRNA (cytosine-C 99.3 2.1E-11 4.6E-16 122.4 13.4 125 40-183 112-261 (470)
21 PRK10901 16S rRNA methyltransf 99.3 3.3E-11 7.1E-16 119.8 11.8 125 40-183 243-391 (427)
22 PF05175 MTS: Methyltransferas 99.3 3.7E-11 8E-16 104.9 10.3 120 41-191 31-161 (170)
23 PF12847 Methyltransf_18: Meth 99.2 5.7E-11 1.2E-15 95.1 10.3 98 41-167 1-111 (112)
24 TIGR02752 MenG_heptapren 2-hep 99.2 6.9E-11 1.5E-15 107.1 11.9 108 40-178 44-162 (231)
25 TIGR00563 rsmB ribosomal RNA s 99.2 8.6E-11 1.9E-15 116.8 13.5 125 40-183 237-387 (426)
26 PLN02233 ubiquinone biosynthes 99.2 7.7E-11 1.7E-15 109.9 12.1 104 39-173 71-188 (261)
27 PRK14904 16S rRNA methyltransf 99.2 8.8E-11 1.9E-15 117.4 13.3 123 40-183 249-396 (445)
28 COG2230 Cfa Cyclopropane fatty 99.2 6.8E-11 1.5E-15 111.1 9.6 110 27-171 59-180 (283)
29 PRK04266 fibrillarin; Provisio 99.2 1.3E-10 2.8E-15 106.4 10.6 97 39-166 70-175 (226)
30 TIGR00138 gidB 16S rRNA methyl 99.2 2.3E-10 4.9E-15 101.3 10.6 103 42-182 43-156 (181)
31 PRK14103 trans-aconitate 2-met 99.1 2.4E-10 5.2E-15 105.6 9.6 114 19-169 11-128 (255)
32 PF13847 Methyltransf_31: Meth 99.1 2.6E-10 5.6E-15 97.1 8.7 100 40-169 2-112 (152)
33 PRK00107 gidB 16S rRNA methylt 99.1 1.4E-09 3E-14 97.0 12.8 96 37-169 41-147 (187)
34 TIGR02072 BioC biotin biosynth 99.1 1E-09 2.2E-14 98.6 11.9 122 21-175 15-143 (240)
35 COG1189 Predicted rRNA methyla 99.1 1E-09 2.2E-14 100.4 11.8 117 17-167 55-178 (245)
36 PF02353 CMAS: Mycolic acid cy 99.1 2.5E-10 5.4E-15 107.4 7.2 108 28-170 50-169 (273)
37 PLN02244 tocopherol O-methyltr 99.1 1.4E-09 2.9E-14 105.3 11.9 96 40-168 117-224 (340)
38 PRK10258 biotin biosynthesis p 99.0 1.3E-09 2.7E-14 100.3 10.9 107 41-181 42-154 (251)
39 KOG1122 tRNA and rRNA cytosine 99.0 1.1E-09 2.4E-14 106.8 10.9 131 40-189 240-395 (460)
40 PRK09328 N5-glutamine S-adenos 99.0 6.9E-09 1.5E-13 96.3 15.8 141 40-207 107-274 (275)
41 TIGR02469 CbiT precorrin-6Y C5 99.0 1.7E-09 3.8E-14 87.5 10.3 94 40-167 18-122 (124)
42 TIGR03534 RF_mod_PrmC protein- 99.0 3.5E-09 7.6E-14 96.6 13.5 133 41-196 87-246 (251)
43 PRK15001 SAM-dependent 23S rib 99.0 2.5E-09 5.4E-14 104.9 12.9 131 42-210 229-373 (378)
44 PRK11873 arsM arsenite S-adeno 99.0 1.4E-09 3.1E-14 101.2 10.5 98 39-167 75-183 (272)
45 KOG1540 Ubiquinone biosynthesi 99.0 2.3E-09 4.9E-14 98.9 11.4 121 41-187 100-234 (296)
46 PTZ00098 phosphoethanolamine N 99.0 1.7E-09 3.8E-14 100.9 10.9 128 10-169 22-158 (263)
47 PRK01683 trans-aconitate 2-met 99.0 1.4E-09 3E-14 100.4 9.9 96 40-168 30-131 (258)
48 PF13659 Methyltransf_26: Meth 99.0 7E-10 1.5E-14 89.6 7.0 103 42-167 1-115 (117)
49 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.0 1.6E-09 3.4E-14 102.5 10.3 126 40-183 84-238 (283)
50 PRK08287 cobalt-precorrin-6Y C 99.0 6.6E-09 1.4E-13 91.6 13.1 113 40-189 30-154 (187)
51 PRK00377 cbiT cobalt-precorrin 99.0 6.5E-09 1.4E-13 92.7 12.5 121 40-194 39-172 (198)
52 PF08241 Methyltransf_11: Meth 99.0 1.1E-09 2.4E-14 84.1 6.5 87 46-165 1-95 (95)
53 TIGR03704 PrmC_rel_meth putati 99.0 6.6E-09 1.4E-13 96.5 12.8 121 42-182 87-230 (251)
54 TIGR00537 hemK_rel_arch HemK-r 99.0 1.3E-08 2.7E-13 89.2 13.6 118 41-183 19-156 (179)
55 PRK00121 trmB tRNA (guanine-N( 99.0 2.5E-09 5.4E-14 96.0 9.2 119 40-181 39-170 (202)
56 PRK14966 unknown domain/N5-glu 99.0 1.6E-08 3.5E-13 100.0 15.6 145 40-209 250-419 (423)
57 TIGR00536 hemK_fam HemK family 99.0 1.6E-08 3.5E-13 95.3 14.7 138 43-207 116-281 (284)
58 PRK14967 putative methyltransf 98.9 2.1E-08 4.5E-13 91.1 14.1 133 26-182 22-174 (223)
59 COG4106 Tam Trans-aconitate me 98.9 1.4E-09 3.1E-14 98.1 6.2 117 17-170 10-132 (257)
60 PLN02490 MPBQ/MSBQ methyltrans 98.9 2E-08 4.4E-13 97.2 14.6 158 34-223 106-293 (340)
61 PRK11705 cyclopropane fatty ac 98.9 4.4E-09 9.5E-14 103.4 9.9 103 32-169 159-269 (383)
62 KOG2198 tRNA cytosine-5-methyl 98.9 7.3E-09 1.6E-13 99.9 10.4 137 40-186 154-318 (375)
63 PRK15068 tRNA mo(5)U34 methylt 98.9 1E-08 2.2E-13 98.6 11.5 125 9-168 77-227 (322)
64 PRK08317 hypothetical protein; 98.9 1.1E-08 2.3E-13 91.8 10.8 97 40-167 18-124 (241)
65 PRK11036 putative S-adenosyl-L 98.9 5.7E-09 1.2E-13 96.6 9.1 106 29-169 34-151 (255)
66 TIGR00478 tly hemolysin TlyA f 98.9 5.6E-09 1.2E-13 95.9 8.7 110 20-166 54-170 (228)
67 PRK11088 rrmA 23S rRNA methylt 98.9 1.2E-08 2.6E-13 95.4 11.0 97 40-172 84-186 (272)
68 TIGR00080 pimt protein-L-isoas 98.9 7.3E-09 1.6E-13 93.6 9.2 92 39-167 75-177 (215)
69 PRK14968 putative methyltransf 98.9 7.6E-08 1.6E-12 83.8 15.1 120 40-183 22-164 (188)
70 TIGR01177 conserved hypothetic 98.9 1.5E-08 3.3E-13 97.4 11.6 112 39-176 180-303 (329)
71 TIGR00406 prmA ribosomal prote 98.9 1.4E-08 3.1E-13 95.9 11.1 112 40-189 158-281 (288)
72 TIGR00091 tRNA (guanine-N(7)-) 98.9 1.2E-08 2.7E-13 90.8 9.5 122 40-183 15-148 (194)
73 PRK11207 tellurite resistance 98.9 1.4E-08 3E-13 90.7 9.7 93 41-166 30-133 (197)
74 PRK13942 protein-L-isoaspartat 98.9 1.6E-08 3.4E-13 91.5 10.1 92 39-167 74-176 (212)
75 PRK07402 precorrin-6B methylas 98.8 3.7E-08 8.1E-13 87.5 12.3 117 40-191 39-167 (196)
76 PLN02336 phosphoethanolamine N 98.8 1.7E-08 3.8E-13 101.3 11.3 97 39-168 264-370 (475)
77 TIGR03533 L3_gln_methyl protei 98.8 3.3E-08 7.1E-13 93.5 11.6 118 41-182 121-264 (284)
78 PF13649 Methyltransf_25: Meth 98.8 6.8E-09 1.5E-13 82.3 5.8 90 45-161 1-101 (101)
79 PRK09489 rsmC 16S ribosomal RN 98.8 4.8E-08 1E-12 94.8 12.8 117 42-190 197-323 (342)
80 TIGR00740 methyltransferase, p 98.8 3.4E-08 7.3E-13 90.4 11.0 99 39-167 51-161 (239)
81 TIGR01934 MenG_MenH_UbiE ubiqu 98.8 2.8E-08 6.1E-13 88.5 10.2 100 40-170 38-146 (223)
82 COG2813 RsmC 16S RNA G1207 met 98.8 8.8E-08 1.9E-12 90.7 13.4 118 42-191 159-287 (300)
83 PRK04457 spermidine synthase; 98.8 9.6E-08 2.1E-12 89.3 13.6 124 40-190 65-202 (262)
84 PRK01544 bifunctional N5-gluta 98.8 9.3E-08 2E-12 97.3 14.5 138 42-206 139-304 (506)
85 PRK15128 23S rRNA m(5)C1962 me 98.8 7.6E-08 1.6E-12 95.1 13.1 123 40-182 219-355 (396)
86 PF13489 Methyltransf_23: Meth 98.8 1.4E-08 3E-13 85.7 6.5 99 39-171 20-119 (161)
87 PRK13944 protein-L-isoaspartat 98.8 4.1E-08 9E-13 88.2 9.9 91 40-167 71-173 (205)
88 TIGR00477 tehB tellurite resis 98.8 2.3E-08 5.1E-13 89.1 8.2 100 34-167 24-133 (195)
89 TIGR00452 methyltransferase, p 98.8 6.8E-08 1.5E-12 92.7 11.7 110 24-168 105-226 (314)
90 PRK15451 tRNA cmo(5)U34 methyl 98.8 2.8E-08 6.2E-13 91.7 8.8 99 39-167 54-164 (247)
91 PRK11805 N5-glutamine S-adenos 98.8 4.7E-08 1E-12 93.5 10.3 104 43-168 135-264 (307)
92 PF05401 NodS: Nodulation prot 98.8 5.2E-08 1.1E-12 87.2 9.8 118 42-191 44-179 (201)
93 COG2890 HemK Methylase of poly 98.7 2.2E-07 4.9E-12 87.7 14.1 128 44-196 113-268 (280)
94 PF06460 NSP13: Coronavirus NS 98.7 7.6E-08 1.6E-12 88.9 10.5 142 41-212 61-212 (299)
95 PRK00811 spermidine synthase; 98.7 1.7E-07 3.7E-12 88.6 13.2 142 40-208 75-237 (283)
96 PLN02396 hexaprenyldihydroxybe 98.7 2.7E-08 6E-13 95.7 8.0 96 41-170 131-238 (322)
97 PRK00216 ubiE ubiquinone/menaq 98.7 2.2E-07 4.7E-12 83.7 13.0 99 41-170 51-161 (239)
98 PRK05785 hypothetical protein; 98.7 5.8E-08 1.2E-12 88.8 8.4 88 40-160 50-140 (226)
99 PRK06922 hypothetical protein; 98.7 9.8E-08 2.1E-12 98.8 10.5 103 41-167 418-537 (677)
100 COG2242 CobL Precorrin-6B meth 98.7 4.4E-07 9.6E-12 80.5 13.2 107 40-183 33-151 (187)
101 PRK11783 rlmL 23S rRNA m(2)G24 98.7 1.2E-07 2.6E-12 99.9 11.3 107 41-168 538-657 (702)
102 PHA03412 putative methyltransf 98.7 9E-08 1.9E-12 88.2 8.9 102 42-162 50-158 (241)
103 PRK00517 prmA ribosomal protei 98.7 1.9E-07 4.1E-12 86.4 11.0 110 39-188 117-235 (250)
104 TIGR03587 Pse_Me-ase pseudamin 98.6 1.5E-07 3.3E-12 84.8 9.6 101 32-165 34-140 (204)
105 PHA03411 putative methyltransf 98.6 1.6E-07 3.5E-12 88.3 9.9 107 41-170 64-185 (279)
106 PRK14121 tRNA (guanine-N(7)-)- 98.6 1.9E-07 4E-12 91.8 10.7 103 41-168 122-236 (390)
107 COG2264 PrmA Ribosomal protein 98.6 7.6E-08 1.6E-12 91.4 7.6 119 40-192 161-289 (300)
108 PRK12335 tellurite resistance 98.6 1.2E-07 2.6E-12 89.5 9.0 93 38-165 118-221 (287)
109 COG1092 Predicted SAM-dependen 98.6 3.2E-07 6.9E-12 90.4 12.1 121 42-182 218-352 (393)
110 PRK13943 protein-L-isoaspartat 98.6 2.5E-07 5.4E-12 89.1 10.9 91 40-167 79-180 (322)
111 PF08242 Methyltransf_12: Meth 98.6 6E-08 1.3E-12 76.3 5.3 88 46-163 1-99 (99)
112 smart00828 PKS_MT Methyltransf 98.6 1.2E-07 2.7E-12 85.4 7.6 93 43-168 1-105 (224)
113 PLN02336 phosphoethanolamine N 98.6 2.1E-07 4.6E-12 93.5 8.7 96 41-166 37-141 (475)
114 PRK00312 pcm protein-L-isoaspa 98.5 5.1E-07 1.1E-11 81.1 10.1 89 40-168 77-176 (212)
115 COG2227 UbiG 2-polyprenyl-3-me 98.5 2E-07 4.3E-12 85.7 7.4 95 41-169 59-163 (243)
116 TIGR03438 probable methyltrans 98.5 7.1E-07 1.5E-11 84.9 11.4 110 39-172 61-182 (301)
117 smart00138 MeTrc Methyltransfe 98.5 2.8E-07 6E-12 86.3 8.4 101 41-166 99-241 (264)
118 PLN03075 nicotianamine synthas 98.5 8.3E-07 1.8E-11 84.4 11.5 134 41-209 123-275 (296)
119 COG2519 GCD14 tRNA(1-methylade 98.5 1.6E-06 3.6E-11 80.2 13.0 110 39-185 92-214 (256)
120 PF10672 Methyltrans_SAM: S-ad 98.5 3.4E-07 7.4E-12 86.7 8.5 118 41-182 123-254 (286)
121 cd02440 AdoMet_MTases S-adenos 98.5 7.6E-07 1.6E-11 67.5 8.8 92 44-166 1-103 (107)
122 PF01135 PCMT: Protein-L-isoas 98.5 1.8E-07 3.9E-12 84.8 6.1 92 39-167 70-172 (209)
123 PF07021 MetW: Methionine bios 98.5 4.1E-07 8.9E-12 81.2 8.0 70 37-126 9-82 (193)
124 KOG1271 Methyltransferases [Ge 98.5 6.3E-07 1.4E-11 79.3 8.9 128 35-188 61-202 (227)
125 PF06325 PrmA: Ribosomal prote 98.5 5.7E-07 1.2E-11 85.6 9.3 108 39-185 159-277 (295)
126 PF03848 TehB: Tellurite resis 98.5 3.8E-07 8.2E-12 81.7 7.3 101 34-168 24-134 (192)
127 PF14314 Methyltrans_Mon: Viru 98.5 4.3E-06 9.3E-11 86.9 15.9 171 21-213 304-505 (675)
128 TIGR02716 C20_methyl_CrtF C-20 98.5 6.7E-07 1.5E-11 84.9 9.2 98 39-168 147-255 (306)
129 PRK06202 hypothetical protein; 98.4 1.8E-06 3.9E-11 78.6 11.2 99 40-165 59-165 (232)
130 TIGR03840 TMPT_Se_Te thiopurin 98.4 4.6E-07 1E-11 82.3 7.0 98 40-168 33-153 (213)
131 PLN02366 spermidine synthase 98.4 3.8E-06 8.2E-11 80.5 13.5 142 40-208 90-253 (308)
132 PLN02781 Probable caffeoyl-CoA 98.4 1.8E-06 4E-11 79.4 9.1 99 40-166 67-177 (234)
133 TIGR00417 speE spermidine synt 98.4 5.8E-06 1.3E-10 77.5 12.6 141 40-208 71-232 (270)
134 PLN02672 methionine S-methyltr 98.3 6.9E-06 1.5E-10 89.7 13.4 131 42-193 119-305 (1082)
135 smart00650 rADc Ribosomal RNA 98.3 3.8E-06 8.2E-11 73.0 9.4 93 40-167 12-113 (169)
136 PRK01581 speE spermidine synth 98.3 1.6E-05 3.4E-10 77.7 14.1 141 40-208 149-313 (374)
137 KOG1270 Methyltransferases [Co 98.3 1.7E-06 3.6E-11 80.4 6.7 90 42-168 90-196 (282)
138 PF08704 GCD14: tRNA methyltra 98.3 4.5E-06 9.7E-11 77.6 9.4 118 39-189 38-169 (247)
139 PRK03612 spermidine synthase; 98.2 5.3E-06 1.2E-10 84.8 10.4 118 40-184 296-437 (521)
140 PRK05134 bifunctional 3-demeth 98.2 9.8E-06 2.1E-10 73.5 10.8 97 40-169 47-153 (233)
141 TIGR01983 UbiG ubiquinone bios 98.2 9.1E-06 2E-10 73.0 10.1 96 41-169 45-151 (224)
142 PRK10909 rsmD 16S rRNA m(2)G96 98.2 1.3E-05 2.7E-10 72.2 10.8 99 40-169 52-161 (199)
143 PLN02476 O-methyltransferase 98.2 1.2E-05 2.5E-10 76.0 10.8 99 40-166 117-227 (278)
144 COG2518 Pcm Protein-L-isoaspar 98.2 1.1E-05 2.5E-10 72.9 9.5 89 39-167 70-169 (209)
145 COG2521 Predicted archaeal met 98.1 2.4E-05 5.2E-10 71.9 11.3 121 41-191 134-277 (287)
146 TIGR02081 metW methionine bios 98.1 3.7E-06 8.1E-11 74.6 6.0 72 38-129 10-85 (194)
147 KOG2904 Predicted methyltransf 98.1 4.5E-05 9.6E-10 71.5 12.7 140 42-206 149-325 (328)
148 PF01269 Fibrillarin: Fibrilla 98.1 5.1E-06 1.1E-10 75.8 6.0 99 39-167 71-178 (229)
149 PRK13255 thiopurine S-methyltr 98.1 5.8E-06 1.2E-10 75.4 6.0 95 40-165 36-153 (218)
150 PF08003 Methyltransf_9: Prote 98.1 6.8E-05 1.5E-09 71.4 13.2 109 24-167 99-219 (315)
151 PF05148 Methyltransf_8: Hypot 98.0 2.9E-05 6.2E-10 70.3 9.4 109 40-188 71-182 (219)
152 PRK13168 rumA 23S rRNA m(5)U19 98.0 4E-05 8.6E-10 76.8 10.9 94 40-167 296-400 (443)
153 TIGR02021 BchM-ChlM magnesium 98.0 2.3E-05 5.1E-10 70.6 8.2 90 40-164 54-155 (219)
154 PRK03522 rumB 23S rRNA methylu 98.0 2.7E-05 5.8E-10 74.6 8.8 70 41-134 173-253 (315)
155 KOG1975 mRNA cap methyltransfe 98.0 2.8E-05 6E-10 74.4 8.6 149 8-183 76-250 (389)
156 PF01596 Methyltransf_3: O-met 98.0 1.7E-05 3.7E-10 71.8 7.0 99 40-166 44-154 (205)
157 COG2263 Predicted RNA methylas 98.0 9.3E-05 2E-09 66.0 11.2 100 41-178 45-154 (198)
158 COG3963 Phospholipid N-methylt 97.9 8E-05 1.7E-09 65.3 10.1 107 40-170 47-159 (194)
159 TIGR00095 RNA methyltransferas 97.9 3.7E-05 8E-10 68.5 8.3 101 41-169 49-161 (189)
160 COG2933 Predicted SAM-dependen 97.9 1.6E-05 3.5E-10 74.0 6.1 83 22-127 185-278 (358)
161 PF03291 Pox_MCEL: mRNA cappin 97.9 1.7E-05 3.6E-10 76.8 5.6 114 41-182 62-198 (331)
162 PF02390 Methyltransf_4: Putat 97.9 3.5E-05 7.6E-10 69.1 7.0 103 43-167 19-133 (195)
163 TIGR00479 rumA 23S rRNA (uraci 97.9 0.00015 3.4E-09 72.1 12.3 70 40-128 291-371 (431)
164 KOG4300 Predicted methyltransf 97.8 2.5E-05 5.4E-10 70.6 5.5 111 43-185 78-200 (252)
165 PLN02585 magnesium protoporphy 97.8 9.9E-05 2.1E-09 71.0 10.1 61 41-127 144-220 (315)
166 COG1041 Predicted DNA modifica 97.8 9.9E-05 2.1E-09 71.4 10.0 134 40-203 196-342 (347)
167 PF00891 Methyltransf_2: O-met 97.8 6.7E-05 1.5E-09 68.6 8.6 102 32-167 92-199 (241)
168 PLN02823 spermine synthase 97.8 0.00039 8.4E-09 67.5 13.8 139 41-208 103-267 (336)
169 KOG3010 Methyltransferase [Gen 97.8 2.7E-05 5.9E-10 71.7 5.0 103 36-169 28-139 (261)
170 PRK07580 Mg-protoporphyrin IX 97.8 5.8E-05 1.3E-09 67.9 7.2 63 40-128 62-136 (230)
171 PRK11727 23S rRNA mA1618 methy 97.8 0.00048 1E-08 66.5 13.8 150 41-212 114-310 (321)
172 TIGR02085 meth_trns_rumB 23S r 97.8 0.00017 3.7E-09 70.8 10.2 91 41-167 233-334 (374)
173 KOG1596 Fibrillarin and relate 97.7 6.9E-05 1.5E-09 69.1 6.0 101 39-169 154-263 (317)
174 COG4122 Predicted O-methyltran 97.7 0.00035 7.7E-09 63.8 10.6 95 40-166 58-165 (219)
175 COG0421 SpeE Spermidine syntha 97.7 0.00076 1.6E-08 64.0 13.1 140 43-210 78-238 (282)
176 PF05185 PRMT5: PRMT5 arginine 97.7 2.6E-05 5.7E-10 78.3 3.2 97 41-164 186-294 (448)
177 PRK00050 16S rRNA m(4)C1402 me 97.7 0.00022 4.8E-09 68.0 9.1 80 31-127 10-98 (296)
178 KOG3191 Predicted N6-DNA-methy 97.7 0.00076 1.6E-08 59.9 11.7 121 42-183 44-184 (209)
179 PLN02589 caffeoyl-CoA O-methyl 97.7 0.00025 5.4E-09 66.0 9.2 99 40-166 78-189 (247)
180 PRK14896 ksgA 16S ribosomal RN 97.6 0.00016 3.5E-09 67.3 7.9 66 40-130 28-102 (258)
181 KOG1541 Predicted protein carb 97.6 0.00015 3.3E-09 66.1 7.4 139 42-206 51-201 (270)
182 PF03602 Cons_hypoth95: Conser 97.6 0.00013 2.9E-09 64.8 6.9 103 41-170 42-156 (183)
183 KOG1663 O-methyltransferase [S 97.6 0.00035 7.7E-09 64.0 9.6 99 40-166 72-182 (237)
184 KOG2361 Predicted methyltransf 97.6 4.5E-05 9.8E-10 70.3 3.7 145 6-175 36-191 (264)
185 KOG3045 Predicted RNA methylas 97.6 0.00027 5.9E-09 65.9 8.7 107 40-188 179-288 (325)
186 KOG3420 Predicted RNA methylas 97.6 0.0002 4.2E-09 61.6 7.2 89 20-131 25-126 (185)
187 TIGR00755 ksgA dimethyladenosi 97.6 0.00036 7.8E-09 64.6 9.2 64 40-128 28-103 (253)
188 KOG1499 Protein arginine N-met 97.6 0.00021 4.6E-09 69.0 7.6 94 41-164 60-164 (346)
189 PRK13256 thiopurine S-methyltr 97.6 0.00026 5.5E-09 65.1 7.8 101 40-169 42-165 (226)
190 PRK00274 ksgA 16S ribosomal RN 97.5 0.00015 3.3E-09 68.1 6.2 66 40-128 41-114 (272)
191 PF02475 Met_10: Met-10+ like- 97.5 0.00011 2.4E-09 66.3 4.8 90 38-164 98-199 (200)
192 PRK05031 tRNA (uracil-5-)-meth 97.5 0.00045 9.8E-09 67.5 9.5 73 43-134 208-301 (362)
193 COG4076 Predicted RNA methylas 97.5 0.00011 2.5E-09 65.5 4.5 88 43-164 34-132 (252)
194 PF05724 TPMT: Thiopurine S-me 97.5 0.00037 8.1E-09 63.6 8.0 140 18-189 14-188 (218)
195 PF04989 CmcI: Cephalosporin h 97.5 0.00052 1.1E-08 62.1 8.8 104 41-165 32-145 (206)
196 PF09445 Methyltransf_15: RNA 97.5 0.00026 5.7E-09 61.9 6.6 112 43-182 1-134 (163)
197 COG0742 N6-adenine-specific me 97.5 0.0005 1.1E-08 61.3 8.3 99 41-169 43-156 (187)
198 PF01170 UPF0020: Putative RNA 97.5 0.00078 1.7E-08 59.5 9.4 121 21-160 12-144 (179)
199 KOG1500 Protein arginine N-met 97.5 0.0003 6.4E-09 67.8 7.1 91 42-164 178-279 (517)
200 PRK04338 N(2),N(2)-dimethylgua 97.4 0.00048 1E-08 68.0 8.5 90 41-166 57-157 (382)
201 PTZ00338 dimethyladenosine tra 97.4 0.00026 5.6E-09 67.5 6.2 67 40-131 35-113 (294)
202 PRK04148 hypothetical protein; 97.4 0.001 2.3E-08 56.3 9.0 94 41-172 16-114 (134)
203 COG1889 NOP1 Fibrillarin-like 97.4 0.0015 3.2E-08 59.1 10.0 96 39-165 74-178 (231)
204 COG4976 Predicted methyltransf 97.4 0.00021 4.5E-09 65.7 4.3 98 42-171 126-229 (287)
205 COG0220 Predicted S-adenosylme 97.3 0.0012 2.6E-08 60.7 9.2 102 43-167 50-164 (227)
206 TIGR02143 trmA_only tRNA (urac 97.3 0.0013 2.7E-08 64.3 9.0 73 43-134 199-292 (353)
207 PF01564 Spermine_synth: Sperm 97.2 0.0031 6.8E-08 58.5 10.7 145 40-210 75-239 (246)
208 COG2520 Predicted methyltransf 97.2 0.0025 5.4E-08 61.9 10.3 95 40-171 187-293 (341)
209 PF02384 N6_Mtase: N-6 DNA Met 97.2 0.00034 7.3E-09 66.4 4.3 116 40-167 45-183 (311)
210 PF13578 Methyltransf_24: Meth 97.1 0.00042 9.1E-09 55.1 3.4 92 46-165 1-103 (106)
211 PF05219 DREV: DREV methyltran 97.1 0.0029 6.2E-08 59.2 9.1 91 41-167 94-188 (265)
212 PRK01544 bifunctional N5-gluta 97.1 0.0024 5.3E-08 65.2 9.4 105 40-167 346-462 (506)
213 PLN02232 ubiquinone biosynthes 97.1 0.0018 3.9E-08 55.9 7.1 61 93-172 26-86 (160)
214 PF12147 Methyltransf_20: Puta 97.1 0.0045 9.8E-08 58.8 10.0 124 20-167 108-249 (311)
215 TIGR03439 methyl_EasF probable 96.9 0.018 3.9E-07 55.6 13.4 110 39-167 74-197 (319)
216 PF06080 DUF938: Protein of un 96.9 0.0024 5.3E-08 57.7 6.9 114 29-166 14-140 (204)
217 PF10294 Methyltransf_16: Puta 96.9 0.0061 1.3E-07 53.4 9.3 115 39-181 43-171 (173)
218 KOG2899 Predicted methyltransf 96.9 0.0029 6.3E-08 58.6 7.2 34 42-88 59-92 (288)
219 PF08123 DOT1: Histone methyla 96.9 0.0071 1.5E-07 54.8 9.6 105 30-165 32-156 (205)
220 COG0357 GidB Predicted S-adeno 96.8 0.018 3.9E-07 52.6 11.5 88 42-166 68-167 (215)
221 TIGR00308 TRM1 tRNA(guanine-26 96.8 0.0059 1.3E-07 60.2 8.8 91 42-166 45-146 (374)
222 PRK00536 speE spermidine synth 96.7 0.015 3.3E-07 54.6 10.6 109 40-190 71-198 (262)
223 COG0030 KsgA Dimethyladenosine 96.6 0.0089 1.9E-07 56.0 8.4 77 31-130 21-106 (259)
224 PF03141 Methyltransf_29: Puta 96.6 0.003 6.5E-08 63.8 5.4 106 31-167 104-219 (506)
225 PF02527 GidB: rRNA small subu 96.6 0.0061 1.3E-07 54.3 6.6 90 44-172 51-151 (184)
226 KOG0820 Ribosomal RNA adenine 96.5 0.01 2.3E-07 55.9 8.2 74 31-130 49-134 (315)
227 KOG2915 tRNA(1-methyladenosine 96.5 0.018 3.8E-07 54.3 9.5 91 40-165 104-207 (314)
228 COG2265 TrmA SAM-dependent met 96.5 0.016 3.6E-07 58.1 10.0 73 40-134 292-375 (432)
229 PF01739 CheR: CheR methyltran 96.5 0.005 1.1E-07 55.3 5.7 100 41-165 31-173 (196)
230 KOG2940 Predicted methyltransf 96.5 0.0028 6E-08 58.5 4.0 113 34-179 65-186 (325)
231 TIGR02987 met_A_Alw26 type II 96.4 0.01 2.2E-07 60.8 7.9 80 41-128 31-121 (524)
232 PF05958 tRNA_U5-meth_tr: tRNA 96.4 0.0022 4.8E-08 62.5 2.9 75 44-135 199-292 (352)
233 PRK11524 putative methyltransf 96.3 0.023 5.1E-07 53.6 9.4 92 95-193 9-108 (284)
234 KOG2187 tRNA uracil-5-methyltr 96.3 0.0065 1.4E-07 61.5 5.8 60 26-100 368-438 (534)
235 PF06962 rRNA_methylase: Putat 96.3 0.02 4.4E-07 48.8 8.0 86 80-173 1-98 (140)
236 KOG1661 Protein-L-isoaspartate 96.2 0.014 3E-07 53.2 6.4 93 39-167 80-193 (237)
237 PRK10611 chemotaxis methyltran 96.1 0.023 5.1E-07 54.0 8.3 100 42-166 116-261 (287)
238 PRK11783 rlmL 23S rRNA m(2)G24 95.9 0.086 1.9E-06 56.1 12.0 120 36-165 185-345 (702)
239 COG4798 Predicted methyltransf 95.8 0.032 7E-07 50.3 7.2 38 39-88 46-83 (238)
240 PF00398 RrnaAD: Ribosomal RNA 95.8 0.02 4.4E-07 53.3 6.3 67 41-127 30-105 (262)
241 PRK13699 putative methylase; P 95.4 0.11 2.3E-06 47.7 9.3 91 96-195 3-103 (227)
242 KOG3178 Hydroxyindole-O-methyl 95.4 0.059 1.3E-06 52.3 7.8 97 39-168 175-276 (342)
243 COG0500 SmtA SAM-dependent met 95.4 0.12 2.5E-06 40.0 8.3 95 45-170 52-158 (257)
244 COG0275 Predicted S-adenosylme 95.2 0.51 1.1E-05 45.3 13.4 73 40-127 22-104 (314)
245 PF11968 DUF3321: Putative met 95.1 0.14 3E-06 46.8 9.0 147 10-190 13-180 (219)
246 TIGR00006 S-adenosyl-methyltra 95.0 0.088 1.9E-06 50.6 7.7 80 31-127 11-100 (305)
247 PF13679 Methyltransf_32: Meth 94.9 0.075 1.6E-06 44.8 6.3 41 40-89 24-64 (141)
248 PF06016 Reovirus_L2: Reovirus 94.5 0.072 1.6E-06 59.1 6.4 99 114-217 564-665 (1289)
249 COG1352 CheR Methylase of chem 94.5 0.13 2.9E-06 48.5 7.4 99 42-165 97-239 (268)
250 PF10354 DUF2431: Domain of un 94.4 0.48 1E-05 41.4 10.3 109 48-172 3-130 (166)
251 PF04672 Methyltransf_19: S-ad 94.3 0.28 6.1E-06 46.2 9.2 123 41-184 68-207 (267)
252 KOG2360 Proliferation-associat 94.3 0.049 1.1E-06 53.6 4.1 80 40-137 212-302 (413)
253 cd00315 Cyt_C5_DNA_methylase C 94.1 0.06 1.3E-06 50.6 4.3 98 43-166 1-110 (275)
254 PF00145 DNA_methylase: C-5 cy 94.0 0.025 5.4E-07 53.1 1.5 95 44-166 2-109 (335)
255 KOG2671 Putative RNA methylase 93.9 0.19 4.1E-06 49.0 7.2 107 39-167 206-354 (421)
256 PF03141 Methyltransf_29: Puta 93.9 0.28 6E-06 49.9 8.6 134 42-207 366-505 (506)
257 TIGR01444 fkbM_fam methyltrans 93.4 0.099 2.1E-06 43.3 4.0 49 44-105 1-60 (143)
258 PF09243 Rsm22: Mitochondrial 93.4 0.24 5.2E-06 46.7 7.0 48 29-89 22-69 (274)
259 PRK10742 putative methyltransf 93.4 0.15 3.2E-06 47.6 5.5 69 40-130 85-175 (250)
260 PRK08177 short chain dehydroge 93.0 2 4.3E-05 38.1 12.0 73 44-128 3-80 (225)
261 COG3897 Predicted methyltransf 92.9 0.16 3.4E-06 45.9 4.7 96 41-174 79-184 (218)
262 KOG0024 Sorbitol dehydrogenase 92.7 0.63 1.4E-05 45.1 8.6 103 39-171 167-277 (354)
263 COG3510 CmcI Cephalosporin hyd 92.3 1.5 3.3E-05 39.7 10.0 105 41-166 69-179 (237)
264 PRK09424 pntA NAD(P) transhydr 92.3 0.77 1.7E-05 47.2 9.2 131 6-166 124-284 (509)
265 PF00107 ADH_zinc_N: Zinc-bind 92.2 0.25 5.5E-06 40.0 4.7 87 52-170 2-92 (130)
266 cd08283 FDH_like_1 Glutathione 92.0 0.85 1.8E-05 44.5 9.0 111 39-166 182-305 (386)
267 COG1063 Tdh Threonine dehydrog 91.7 1.6 3.5E-05 42.3 10.5 100 41-170 168-272 (350)
268 PRK07533 enoyl-(acyl carrier p 91.6 1.4 3E-05 40.3 9.5 77 41-128 9-97 (258)
269 PRK07806 short chain dehydroge 91.5 1 2.2E-05 40.4 8.3 75 42-128 6-93 (248)
270 PRK06179 short chain dehydroge 91.2 5.2 0.00011 36.3 12.9 76 42-129 4-83 (270)
271 PF01795 Methyltransf_5: MraW 90.6 0.7 1.5E-05 44.5 6.6 73 39-127 18-101 (310)
272 PF05206 TRM13: Methyltransfer 90.2 1 2.2E-05 42.3 7.2 72 28-107 5-87 (259)
273 TIGR03451 mycoS_dep_FDH mycoth 90.1 1.5 3.2E-05 42.1 8.5 97 39-166 174-275 (358)
274 KOG1269 SAM-dependent methyltr 90.1 0.23 4.9E-06 48.9 2.8 96 40-168 109-216 (364)
275 KOG2730 Methylase [General fun 89.8 0.51 1.1E-05 43.5 4.6 69 41-128 94-174 (263)
276 PF12692 Methyltransf_17: S-ad 89.6 1.2 2.6E-05 38.5 6.5 99 43-165 30-132 (160)
277 COG0286 HsdM Type I restrictio 89.4 0.49 1.1E-05 48.3 4.7 161 40-213 185-379 (489)
278 TIGR00675 dcm DNA-methyltransf 89.4 0.31 6.6E-06 46.8 3.1 95 45-166 1-107 (315)
279 COG0270 Dcm Site-specific DNA 89.2 0.55 1.2E-05 45.3 4.7 100 43-166 4-115 (328)
280 PF05891 Methyltransf_PK: AdoM 89.1 1.1 2.3E-05 41.1 6.3 96 41-167 55-161 (218)
281 PRK05786 fabG 3-ketoacyl-(acyl 89.1 5.3 0.00012 35.3 10.8 113 42-166 5-134 (238)
282 PRK06196 oxidoreductase; Provi 88.8 3.3 7.2E-05 39.0 9.7 77 41-129 25-109 (315)
283 PRK07889 enoyl-(acyl carrier p 88.7 4.2 9.1E-05 37.1 10.0 76 42-128 7-94 (256)
284 PRK06079 enoyl-(acyl carrier p 88.6 6.2 0.00014 35.8 11.1 77 41-128 6-92 (252)
285 PRK06398 aldose dehydrogenase; 88.6 4.5 9.8E-05 36.8 10.2 74 42-128 6-81 (258)
286 PF01234 NNMT_PNMT_TEMT: NNMT/ 88.4 0.28 6.1E-06 46.0 2.1 61 97-166 138-198 (256)
287 KOG1331 Predicted methyltransf 88.3 2.8 6E-05 40.0 8.6 97 40-169 44-145 (293)
288 PF03269 DUF268: Caenorhabditi 88.1 2.6 5.6E-05 37.1 7.6 113 42-171 2-115 (177)
289 PRK06953 short chain dehydroge 87.8 5.4 0.00012 35.2 10.0 73 44-128 3-79 (222)
290 TIGR03589 PseB UDP-N-acetylglu 87.4 10 0.00022 36.1 12.1 73 42-129 4-84 (324)
291 PRK08264 short chain dehydroge 87.3 7.4 0.00016 34.5 10.6 75 41-129 5-83 (238)
292 COG4262 Predicted spermidine s 87.3 2.8 6.2E-05 41.5 8.1 101 40-167 288-407 (508)
293 PRK07984 enoyl-(acyl carrier p 87.1 4.3 9.3E-05 37.4 9.1 77 41-128 5-93 (262)
294 PRK07578 short chain dehydroge 87.0 9.1 0.0002 33.1 10.7 100 44-165 2-109 (199)
295 COG1064 AdhP Zn-dependent alco 86.9 3.6 7.9E-05 40.2 8.7 88 40-166 165-258 (339)
296 cd08281 liver_ADH_like1 Zinc-d 86.6 3.3 7.2E-05 39.9 8.5 96 39-166 189-289 (371)
297 COG1255 Uncharacterized protei 86.6 1.7 3.8E-05 36.0 5.4 94 43-173 15-108 (129)
298 PF02254 TrkA_N: TrkA-N domain 86.6 0.99 2.1E-05 35.9 4.0 91 50-169 4-98 (116)
299 PRK05993 short chain dehydroge 86.5 12 0.00026 34.4 11.8 76 42-129 4-86 (277)
300 PF03686 UPF0146: Uncharacteri 86.5 6.4 0.00014 33.1 8.8 95 42-173 14-108 (127)
301 PRK06523 short chain dehydroge 86.1 12 0.00026 33.7 11.4 76 41-128 8-86 (260)
302 TIGR02622 CDP_4_6_dhtase CDP-g 86.0 15 0.00033 35.0 12.6 72 42-128 4-84 (349)
303 KOG2352 Predicted spermine/spe 85.9 5.6 0.00012 40.5 9.7 106 40-168 46-162 (482)
304 KOG2651 rRNA adenine N-6-methy 85.9 0.97 2.1E-05 44.8 4.2 38 37-88 149-186 (476)
305 PRK10458 DNA cytosine methylas 85.6 1.2 2.7E-05 45.2 5.0 51 42-106 88-147 (467)
306 PRK08267 short chain dehydroge 85.6 11 0.00024 34.0 10.9 74 44-129 3-87 (260)
307 PRK08594 enoyl-(acyl carrier p 85.3 20 0.00043 32.6 12.6 77 41-128 6-96 (257)
308 PRK05884 short chain dehydroge 85.2 4.9 0.00011 35.9 8.3 72 44-128 2-78 (223)
309 cd08254 hydroxyacyl_CoA_DH 6-h 85.1 7 0.00015 36.4 9.6 96 38-166 162-262 (338)
310 PLN02657 3,8-divinyl protochlo 84.9 22 0.00047 35.0 13.3 75 41-128 59-145 (390)
311 PRK06182 short chain dehydroge 84.9 7.5 0.00016 35.5 9.5 76 42-129 3-84 (273)
312 PRK08265 short chain dehydroge 84.5 15 0.00034 33.2 11.4 75 42-128 6-89 (261)
313 PLN02989 cinnamyl-alcohol dehy 84.3 19 0.00041 33.7 12.3 72 41-129 4-87 (325)
314 PRK07326 short chain dehydroge 84.2 7.3 0.00016 34.4 8.9 76 42-129 6-92 (237)
315 PRK07454 short chain dehydroge 84.0 6.3 0.00014 35.1 8.5 76 41-128 5-92 (241)
316 PF11599 AviRa: RRNA methyltra 84.0 8.5 0.00018 35.5 9.1 133 23-174 33-220 (246)
317 PRK06128 oxidoreductase; Provi 84.0 12 0.00026 35.0 10.6 112 42-165 55-189 (300)
318 PRK12428 3-alpha-hydroxysteroi 84.0 4.2 9.1E-05 36.6 7.3 84 78-165 9-94 (241)
319 PRK07985 oxidoreductase; Provi 83.6 13 0.00027 34.8 10.6 112 42-165 49-183 (294)
320 PRK12742 oxidoreductase; Provi 83.2 17 0.00036 32.1 10.8 73 42-128 6-84 (237)
321 KOG4022 Dihydropteridine reduc 83.1 16 0.00035 32.5 10.1 110 44-165 5-127 (236)
322 COG4627 Uncharacterized protei 82.5 0.7 1.5E-05 40.4 1.5 49 114-171 42-90 (185)
323 PF01555 N6_N4_Mtase: DNA meth 82.4 2.5 5.3E-05 37.1 5.0 46 120-168 1-57 (231)
324 COG0116 Predicted N6-adenine-s 82.3 11 0.00025 37.3 10.0 116 40-166 190-343 (381)
325 PF07942 N2227: N2227-like pro 82.2 2.9 6.4E-05 39.5 5.7 119 29-164 41-199 (270)
326 PRK06701 short chain dehydroge 82.1 26 0.00056 32.6 12.1 112 42-165 46-179 (290)
327 PRK08159 enoyl-(acyl carrier p 81.7 11 0.00025 34.7 9.4 76 42-128 10-97 (272)
328 PRK06603 enoyl-(acyl carrier p 81.2 29 0.00062 31.6 11.9 76 42-128 8-95 (260)
329 TIGR03201 dearomat_had 6-hydro 80.9 9.7 0.00021 36.3 8.9 97 39-166 164-271 (349)
330 PLN03209 translocon at the inn 80.9 20 0.00044 37.5 11.7 71 41-128 79-168 (576)
331 PRK08219 short chain dehydroge 80.9 24 0.00053 30.7 10.9 71 43-128 4-80 (227)
332 PRK06997 enoyl-(acyl carrier p 80.8 10 0.00023 34.6 8.8 76 42-128 6-93 (260)
333 PRK12744 short chain dehydroge 80.7 14 0.0003 33.3 9.5 75 42-128 8-98 (257)
334 cd05188 MDR Medium chain reduc 80.4 16 0.00035 32.4 9.7 97 36-165 129-230 (271)
335 PRK07576 short chain dehydroge 80.4 14 0.0003 33.7 9.5 76 41-128 8-95 (264)
336 PRK06101 short chain dehydroge 80.4 34 0.00074 30.5 11.9 71 44-127 3-79 (240)
337 PRK06940 short chain dehydroge 80.3 19 0.00042 33.1 10.5 107 44-165 4-123 (275)
338 PRK09186 flagellin modificatio 80.3 17 0.00036 32.5 9.8 76 41-128 3-92 (256)
339 PRK06483 dihydromonapterin red 80.3 14 0.0003 32.8 9.2 74 43-128 3-83 (236)
340 PRK12481 2-deoxy-D-gluconate 3 80.2 6.1 0.00013 35.8 7.0 76 41-128 7-92 (251)
341 PRK05693 short chain dehydroge 80.2 13 0.00028 33.9 9.2 74 44-129 3-82 (274)
342 PRK01747 mnmC bifunctional tRN 80.2 8.2 0.00018 40.7 8.8 141 5-166 20-205 (662)
343 PRK06505 enoyl-(acyl carrier p 79.7 27 0.00059 32.1 11.3 77 41-128 6-94 (271)
344 PLN02653 GDP-mannose 4,6-dehyd 79.7 25 0.00055 33.2 11.3 73 42-129 6-93 (340)
345 PLN02240 UDP-glucose 4-epimera 79.5 40 0.00086 31.8 12.6 72 42-128 5-90 (352)
346 PRK05717 oxidoreductase; Valid 79.1 18 0.00039 32.5 9.7 76 41-128 9-93 (255)
347 PRK07023 short chain dehydroge 79.1 33 0.00071 30.5 11.3 74 43-128 2-86 (243)
348 PLN02896 cinnamyl-alcohol dehy 78.9 28 0.00061 33.2 11.4 72 41-129 9-89 (353)
349 PRK07370 enoyl-(acyl carrier p 78.5 36 0.00078 30.9 11.6 77 41-128 5-96 (258)
350 PLN02662 cinnamyl-alcohol dehy 78.3 44 0.00095 31.0 12.3 72 42-130 4-87 (322)
351 PRK07102 short chain dehydroge 78.3 22 0.00048 31.6 10.0 73 43-128 2-85 (243)
352 PRK08993 2-deoxy-D-gluconate 3 78.2 16 0.00036 32.8 9.2 75 42-128 10-94 (253)
353 cd08239 THR_DH_like L-threonin 78.1 10 0.00022 35.7 8.0 95 40-166 162-261 (339)
354 PRK08415 enoyl-(acyl carrier p 77.4 36 0.00078 31.5 11.4 76 42-128 5-92 (274)
355 KOG1209 1-Acyl dihydroxyaceton 77.3 11 0.00025 34.9 7.5 82 41-133 6-95 (289)
356 PHA01634 hypothetical protein 77.2 3.3 7.1E-05 35.2 3.8 58 10-89 4-62 (156)
357 PRK07067 sorbitol dehydrogenas 76.9 29 0.00062 31.2 10.3 75 42-128 6-89 (257)
358 PLN02253 xanthoxin dehydrogena 76.8 24 0.00053 32.1 10.0 75 42-128 18-103 (280)
359 PRK08324 short chain dehydroge 76.7 25 0.00055 37.2 11.2 75 42-128 422-507 (681)
360 PRK07856 short chain dehydroge 76.5 56 0.0012 29.2 12.3 75 42-128 6-84 (252)
361 PRK12939 short chain dehydroge 76.5 19 0.00041 31.9 8.9 75 42-128 7-93 (250)
362 TIGR01181 dTDP_gluc_dehyt dTDP 76.2 23 0.0005 32.4 9.7 68 50-129 6-83 (317)
363 PRK08261 fabG 3-ketoacyl-(acyl 76.1 24 0.00052 35.0 10.3 75 42-128 210-293 (450)
364 PRK10309 galactitol-1-phosphat 76.0 13 0.00029 35.2 8.2 97 39-166 158-259 (347)
365 PRK06172 short chain dehydroge 75.9 29 0.00062 31.0 10.0 75 42-128 7-93 (253)
366 KOG1709 Guanidinoacetate methy 75.5 16 0.00035 33.8 8.0 95 40-165 100-204 (271)
367 PRK08339 short chain dehydroge 75.4 22 0.00047 32.5 9.2 76 41-128 7-94 (263)
368 COG5459 Predicted rRNA methyla 74.8 1.2 2.7E-05 43.7 0.7 22 149-171 207-228 (484)
369 PRK07774 short chain dehydroge 74.6 27 0.00057 31.1 9.4 75 42-128 6-92 (250)
370 PRK06194 hypothetical protein; 74.3 56 0.0012 29.8 11.7 76 42-129 6-93 (287)
371 TIGR03366 HpnZ_proposed putati 74.2 17 0.00037 33.5 8.2 94 40-166 119-217 (280)
372 PRK06124 gluconate 5-dehydroge 73.8 27 0.00059 31.2 9.4 76 41-128 10-97 (256)
373 PRK12746 short chain dehydroge 73.8 59 0.0013 28.9 11.5 112 42-165 6-144 (254)
374 PRK07814 short chain dehydroge 73.5 12 0.00026 34.0 6.9 76 41-128 9-96 (263)
375 PLN02586 probable cinnamyl alc 73.3 24 0.00051 34.0 9.3 93 38-166 180-277 (360)
376 PRK07577 short chain dehydroge 73.2 43 0.00093 29.4 10.3 74 42-128 3-77 (234)
377 PRK06114 short chain dehydroge 73.2 37 0.00081 30.4 10.1 76 41-128 7-95 (254)
378 PRK08340 glucose-1-dehydrogena 73.0 47 0.001 29.9 10.7 73 44-128 2-85 (259)
379 PRK12937 short chain dehydroge 72.8 29 0.00063 30.6 9.2 75 42-128 5-92 (245)
380 cd08230 glucose_DH Glucose deh 72.7 30 0.00064 33.0 9.7 91 40-166 171-268 (355)
381 TIGR01472 gmd GDP-mannose 4,6- 72.6 48 0.001 31.4 11.1 66 50-129 7-88 (343)
382 PRK05650 short chain dehydroge 72.4 32 0.00069 31.2 9.5 74 44-129 2-87 (270)
383 PLN02740 Alcohol dehydrogenase 72.4 34 0.00073 33.2 10.2 95 39-166 196-299 (381)
384 PLN02260 probable rhamnose bio 72.3 61 0.0013 34.1 12.8 75 42-129 6-90 (668)
385 PRK07063 short chain dehydroge 72.1 38 0.00083 30.4 9.9 75 42-128 7-95 (260)
386 PRK09009 C factor cell-cell si 72.1 26 0.00057 30.9 8.7 74 44-129 2-77 (235)
387 PRK08251 short chain dehydroge 72.0 71 0.0015 28.3 11.8 74 43-128 3-90 (248)
388 PRK05867 short chain dehydroge 71.9 24 0.00052 31.6 8.5 76 41-128 8-95 (253)
389 PRK03659 glutathione-regulated 71.9 8.2 0.00018 40.4 6.1 96 43-169 401-500 (601)
390 cd08237 ribitol-5-phosphate_DH 71.9 16 0.00035 34.8 7.7 89 40-166 162-255 (341)
391 PRK12829 short chain dehydroge 71.7 19 0.0004 32.3 7.7 77 41-129 10-96 (264)
392 PRK08628 short chain dehydroge 71.7 37 0.0008 30.4 9.7 75 42-128 7-92 (258)
393 PLN02572 UDP-sulfoquinovose sy 71.7 46 0.001 33.3 11.2 73 42-129 47-146 (442)
394 TIGR00561 pntA NAD(P) transhyd 71.6 25 0.00054 36.3 9.3 136 7-172 124-290 (511)
395 TIGR01832 kduD 2-deoxy-D-gluco 71.4 25 0.00053 31.3 8.4 76 41-128 4-89 (248)
396 PRK06171 sorbitol-6-phosphate 71.4 50 0.0011 29.7 10.6 75 42-128 9-86 (266)
397 PRK08278 short chain dehydroge 70.9 63 0.0014 29.5 11.2 75 42-128 6-99 (273)
398 PRK06500 short chain dehydroge 70.7 20 0.00043 31.8 7.6 75 42-128 6-89 (249)
399 PRK07904 short chain dehydroge 70.7 25 0.00054 31.9 8.4 77 40-127 6-95 (253)
400 PRK07825 short chain dehydroge 70.5 55 0.0012 29.6 10.7 75 42-128 5-87 (273)
401 PRK07060 short chain dehydroge 70.4 33 0.00072 30.2 9.0 75 41-129 8-87 (245)
402 PRK13394 3-hydroxybutyrate deh 70.4 35 0.00077 30.4 9.2 76 42-129 7-94 (262)
403 TIGR03466 HpnA hopanoid-associ 70.1 46 0.001 30.7 10.2 63 50-128 7-73 (328)
404 PRK09135 pteridine reductase; 69.8 31 0.00068 30.4 8.7 75 42-128 6-94 (249)
405 PRK06181 short chain dehydroge 69.8 67 0.0015 28.8 11.0 74 43-128 2-87 (263)
406 PLN02695 GDP-D-mannose-3',5'-e 69.6 20 0.00044 34.8 7.9 87 25-128 4-94 (370)
407 PRK06197 short chain dehydroge 69.6 60 0.0013 30.2 10.9 76 41-128 15-104 (306)
408 PF04816 DUF633: Family of unk 69.5 22 0.00047 32.2 7.5 102 45-183 1-115 (205)
409 PLN02827 Alcohol dehydrogenase 69.3 33 0.00072 33.3 9.4 95 39-165 191-293 (378)
410 PRK07024 short chain dehydroge 69.0 64 0.0014 29.0 10.7 75 43-129 3-88 (257)
411 COG2910 Putative NADH-flavin r 69.0 22 0.00048 32.1 7.2 62 50-127 7-70 (211)
412 PRK10669 putative cation:proto 68.9 12 0.00026 38.7 6.4 62 50-126 423-488 (558)
413 cd05278 FDH_like Formaldehyde 68.8 35 0.00077 31.9 9.2 94 39-165 165-265 (347)
414 PLN00198 anthocyanidin reducta 68.6 1.1E+02 0.0023 28.9 13.0 71 42-129 9-90 (338)
415 PRK07792 fabG 3-ketoacyl-(acyl 68.5 32 0.00069 32.3 8.8 76 41-128 11-98 (306)
416 PRK12935 acetoacetyl-CoA reduc 68.4 48 0.001 29.4 9.6 76 42-129 6-94 (247)
417 PRK10537 voltage-gated potassi 68.4 20 0.00044 35.7 7.7 97 43-170 241-339 (393)
418 PRK07890 short chain dehydroge 68.3 44 0.00095 29.8 9.4 76 41-128 4-91 (258)
419 PRK06550 fabG 3-ketoacyl-(acyl 68.2 83 0.0018 27.6 13.2 71 42-128 5-76 (235)
420 PRK05875 short chain dehydroge 68.2 30 0.00064 31.4 8.3 75 42-128 7-95 (276)
421 PRK08217 fabG 3-ketoacyl-(acyl 68.1 23 0.0005 31.3 7.4 75 42-128 5-91 (253)
422 PRK12743 oxidoreductase; Provi 68.1 27 0.00058 31.4 8.0 74 43-128 3-89 (256)
423 PF07757 AdoMet_MTase: Predict 67.6 7.6 0.00017 31.9 3.7 23 40-62 57-79 (112)
424 PRK07041 short chain dehydroge 67.5 24 0.00053 30.9 7.4 65 51-128 5-78 (230)
425 TIGR02818 adh_III_F_hyde S-(hy 67.4 33 0.00071 33.1 8.9 93 39-166 183-286 (368)
426 cd08285 NADP_ADH NADP(H)-depen 67.4 34 0.00074 32.4 8.9 96 39-165 164-264 (351)
427 COG1062 AdhC Zn-dependent alco 67.0 40 0.00086 33.2 9.1 100 40-169 184-287 (366)
428 PRK08213 gluconate 5-dehydroge 67.0 74 0.0016 28.5 10.6 76 41-128 11-98 (259)
429 PLN03154 putative allyl alcoho 66.9 45 0.00097 31.9 9.6 93 39-165 156-256 (348)
430 PRK06200 2,3-dihydroxy-2,3-dih 66.6 50 0.0011 29.7 9.5 76 42-129 6-90 (263)
431 COG1748 LYS9 Saccharopine dehy 66.4 16 0.00035 36.4 6.5 70 43-129 2-78 (389)
432 PRK12384 sorbitol-6-phosphate 65.8 90 0.0019 27.9 10.9 74 43-128 3-90 (259)
433 TIGR02825 B4_12hDH leukotriene 65.8 26 0.00057 32.7 7.7 93 39-165 136-235 (325)
434 KOG2078 tRNA modification enzy 65.7 2.3 5E-05 42.7 0.4 46 29-89 236-282 (495)
435 PRK08085 gluconate 5-dehydroge 65.5 84 0.0018 28.0 10.7 76 41-128 8-95 (254)
436 PRK07666 fabG 3-ketoacyl-(acyl 65.3 35 0.00077 30.1 8.1 76 42-129 7-94 (239)
437 PLN02986 cinnamyl-alcohol dehy 65.3 1.2E+02 0.0026 28.3 13.0 71 42-129 5-87 (322)
438 PRK08303 short chain dehydroge 65.1 79 0.0017 29.8 10.8 75 41-127 7-103 (305)
439 PRK06180 short chain dehydroge 65.1 96 0.0021 28.2 11.2 76 42-129 4-88 (277)
440 PRK12826 3-ketoacyl-(acyl-carr 65.1 70 0.0015 28.1 10.0 75 42-128 6-92 (251)
441 KOG0822 Protein kinase inhibit 65.0 18 0.00039 37.6 6.5 99 42-166 368-477 (649)
442 PRK12429 3-hydroxybutyrate deh 64.8 82 0.0018 27.9 10.4 75 42-128 4-90 (258)
443 PRK08263 short chain dehydroge 64.7 49 0.0011 30.1 9.1 75 42-128 3-86 (275)
444 PRK09987 dTDP-4-dehydrorhamnos 64.4 86 0.0019 29.2 10.9 63 44-129 2-64 (299)
445 PF04445 SAM_MT: Putative SAM- 64.4 3.3 7.1E-05 38.4 1.1 67 43-131 77-163 (234)
446 PF03059 NAS: Nicotianamine sy 64.3 30 0.00065 32.8 7.6 98 43-170 122-233 (276)
447 PRK11908 NAD-dependent epimera 63.9 1E+02 0.0022 29.2 11.4 69 44-128 3-77 (347)
448 PLN02214 cinnamoyl-CoA reducta 63.9 1.4E+02 0.003 28.5 12.7 72 41-129 9-91 (342)
449 PRK07453 protochlorophyllide o 63.6 77 0.0017 29.7 10.4 77 41-129 5-93 (322)
450 TIGR03325 BphB_TodD cis-2,3-di 63.4 65 0.0014 29.0 9.6 75 42-128 5-88 (262)
451 PRK15181 Vi polysaccharide bio 62.8 76 0.0016 30.3 10.3 72 41-129 14-100 (348)
452 PRK06057 short chain dehydroge 62.5 87 0.0019 28.0 10.2 75 41-128 6-88 (255)
453 cd08233 butanediol_DH_like (2R 62.4 53 0.0012 31.0 9.2 97 39-166 170-271 (351)
454 TIGR01202 bchC 2-desacetyl-2-h 61.8 23 0.00049 33.3 6.4 32 118-166 199-230 (308)
455 PRK08220 2,3-dihydroxybenzoate 61.7 1.2E+02 0.0025 26.9 13.2 76 42-129 8-86 (252)
456 COG0604 Qor NADPH:quinone redu 61.7 78 0.0017 30.4 10.2 110 28-170 129-244 (326)
457 PRK06138 short chain dehydroge 61.7 70 0.0015 28.3 9.3 76 42-129 5-91 (252)
458 cd08278 benzyl_alcohol_DH Benz 61.7 53 0.0011 31.5 9.1 93 39-165 184-283 (365)
459 PRK09880 L-idonate 5-dehydroge 61.6 40 0.00087 32.0 8.2 92 41-166 169-265 (343)
460 PRK05565 fabG 3-ketoacyl-(acyl 61.5 61 0.0013 28.4 8.9 76 43-130 6-94 (247)
461 cd08236 sugar_DH NAD(P)-depend 61.4 49 0.0011 31.0 8.6 96 39-166 157-257 (343)
462 PRK03562 glutathione-regulated 61.3 16 0.00034 38.5 5.7 67 43-126 401-471 (621)
463 KOG2920 Predicted methyltransf 61.3 10 0.00022 36.1 3.8 44 32-89 105-150 (282)
464 PRK06077 fabG 3-ketoacyl-(acyl 61.2 1.2E+02 0.0025 26.8 11.1 113 42-166 6-139 (252)
465 PLN02178 cinnamyl-alcohol dehy 60.7 28 0.0006 33.9 7.0 91 40-166 177-272 (375)
466 PRK06463 fabG 3-ketoacyl-(acyl 60.6 87 0.0019 28.0 9.8 75 42-128 7-88 (255)
467 PRK06484 short chain dehydroge 60.6 97 0.0021 31.1 11.1 75 42-128 269-352 (520)
468 PRK05876 short chain dehydroge 60.0 76 0.0016 29.1 9.5 76 42-129 6-93 (275)
469 PRK07109 short chain dehydroge 60.0 1.1E+02 0.0024 29.1 10.9 76 42-129 8-95 (334)
470 PRK08063 enoyl-(acyl carrier p 59.9 1.1E+02 0.0024 27.0 10.4 75 42-128 4-91 (250)
471 PRK13656 trans-2-enoyl-CoA red 59.8 1.2E+02 0.0026 30.5 11.1 76 40-128 39-140 (398)
472 COG0451 WcaG Nucleoside-diphos 59.6 1.4E+02 0.003 27.2 11.4 70 45-130 3-75 (314)
473 PRK08643 acetoin reductase; Va 59.6 1.3E+02 0.0028 26.8 10.9 74 43-128 3-88 (256)
474 PRK10675 UDP-galactose-4-epime 59.5 1.2E+02 0.0026 28.3 10.9 70 44-128 2-82 (338)
475 PRK08226 short chain dehydroge 59.4 1.3E+02 0.0028 26.8 11.4 76 42-129 6-92 (263)
476 PLN02780 ketoreductase/ oxidor 59.3 1.4E+02 0.003 28.4 11.4 76 41-128 52-141 (320)
477 PF13561 adh_short_C2: Enoyl-( 58.9 14 0.00031 33.0 4.3 107 49-167 1-133 (241)
478 PRK06125 short chain dehydroge 58.7 56 0.0012 29.3 8.2 73 42-128 7-90 (259)
479 cd08238 sorbose_phosphate_red 58.6 79 0.0017 31.0 9.9 99 39-166 173-287 (410)
480 TIGR01963 PHB_DH 3-hydroxybuty 58.2 1.3E+02 0.0029 26.5 11.3 74 44-129 3-88 (255)
481 PRK08277 D-mannonate oxidoredu 58.2 78 0.0017 28.7 9.2 75 42-128 10-96 (278)
482 cd08261 Zn_ADH7 Alcohol dehydr 58.0 67 0.0015 30.0 8.9 96 39-165 157-256 (337)
483 PRK12745 3-ketoacyl-(acyl-carr 57.8 45 0.00097 29.7 7.4 73 44-128 4-89 (256)
484 PRK05557 fabG 3-ketoacyl-(acyl 57.8 1.1E+02 0.0023 26.7 9.8 74 43-128 6-92 (248)
485 PRK05855 short chain dehydroge 57.8 54 0.0012 33.0 8.8 76 42-129 315-402 (582)
486 PRK06139 short chain dehydroge 57.5 61 0.0013 31.0 8.6 75 42-128 7-93 (330)
487 KOG3115 Methyltransferase-like 57.3 5.9 0.00013 36.3 1.5 33 43-88 62-94 (249)
488 PRK05872 short chain dehydroge 56.9 1.6E+02 0.0036 27.2 12.5 77 41-129 8-95 (296)
489 PRK12828 short chain dehydroge 56.9 39 0.00084 29.5 6.7 75 42-128 7-91 (239)
490 cd08295 double_bond_reductase_ 56.7 78 0.0017 29.8 9.2 92 39-165 149-249 (338)
491 PF10237 N6-adenineMlase: Prob 56.7 45 0.00098 29.1 6.9 129 40-201 24-153 (162)
492 PLN02427 UDP-apiose/xylose syn 56.6 1.2E+02 0.0027 29.2 10.7 71 42-128 14-95 (386)
493 PF07091 FmrO: Ribosomal RNA m 56.4 13 0.00028 34.8 3.6 43 33-88 97-139 (251)
494 PLN02650 dihydroflavonol-4-red 56.3 1E+02 0.0022 29.2 9.9 70 43-129 6-87 (351)
495 PF05430 Methyltransf_30: S-ad 56.2 13 0.00028 30.9 3.3 68 95-183 33-102 (124)
496 PRK12748 3-ketoacyl-(acyl-carr 55.6 1.5E+02 0.0033 26.4 11.3 76 42-128 5-104 (256)
497 CHL00194 ycf39 Ycf39; Provisio 55.4 42 0.0009 31.6 7.0 66 44-126 2-71 (317)
498 KOG0023 Alcohol dehydrogenase, 55.2 1.1E+02 0.0023 30.1 9.6 92 40-166 180-278 (360)
499 PHA03108 poly(A) polymerase sm 54.9 1.2E+02 0.0025 29.1 9.6 74 42-127 61-139 (300)
500 PRK05854 short chain dehydroge 54.9 1.6E+02 0.0036 27.6 11.0 75 42-128 14-102 (313)
No 1
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=100.00 E-value=1.5e-103 Score=702.96 Aligned_cols=292 Identities=69% Similarity=1.074 Sum_probs=269.2
Q ss_pred CCCCCCCCCcHHHHHHHHhCCchhhhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCE
Q 021161 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL 80 (316)
Q Consensus 1 mg~~s~~~rd~yyr~ak~~g~raRsa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~ 80 (316)
|||+||||||+|||+|||+||||||||||+|||++|++|++.+||||||||||+|||+|++++..+... +...+.+
T Consensus 1 MGktskDKRDiYYRlAKe~gwRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~----~~~~~~k 76 (294)
T KOG1099|consen 1 MGKTSKDKRDIYYRLAKENGWRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPS----SGERDKK 76 (294)
T ss_pred CCCccchhhHHHHHHHHhccchHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCC----cchhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999743111 1112237
Q ss_pred EEEEeCCCCCCCCCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCC
Q 021161 81 IVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG 160 (316)
Q Consensus 81 IvaVDl~~~~~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpG 160 (316)
|||||||+|+||+||.++|||||+.+|++.|++||+++++|+||||||||+||+|++|||+|+||+++||++++++||||
T Consensus 77 IVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~G 156 (294)
T KOG1099|consen 77 IVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPG 156 (294)
T ss_pred EEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEccCCCHHHHHHHHHhcCCceEEecCCCCCCCCcceEEEEecccCCCCCCCccchhhhhhcCCCCCCCCCCCCC
Q 021161 161 GKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGEDQDCSS 240 (316)
Q Consensus 161 G~fV~Kif~~~~~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~fvVc~gf~~p~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 240 (316)
|+||.|||||.++..|+.||+.||+.|.++||++||++|+|+|+||.+|.+|+||.|.+.+|+.+. ..+...
T Consensus 157 g~FVaKifRg~~tslLysql~~ff~kv~~~KPrsSR~sSiEaFvvC~~~~pp~g~~P~~~~~~~~~--------~~~~~~ 228 (294)
T KOG1099|consen 157 GSFVAKIFRGRDTSLLYSQLRKFFKKVTCAKPRSSRNSSIEAFVVCLGYCPPEGFIPDLGTPLGDL--------CEDDMA 228 (294)
T ss_pred CeeehhhhccCchHHHHHHHHHHhhceeeecCCccccccceeeeeecccCCccCCCCCCCCcccCc--------cccchh
Confidence 999999999999999999999999999999999999999999999999999999999988887654 233346
Q ss_pred CCCCCCCcceeceeecCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChhHHHHHHHHHhcccCc
Q 021161 241 GWLEGPNKVYIPFLACGDLNGYDSDRSYPLPKVADGTYQSLDPVQPPIAPPYKRALEMKKASSQGI 306 (316)
Q Consensus 241 ~~~~~~~~~~~~f~~cgdl~~~d~~~~y~~~~~~~~~~~~~~~~~~p~~~~y~~~~~~~~~~~~~~ 306 (316)
++++++++.|+||++||||+|||+|++||.. .++.+++++||||||+||||+|+++|+.+.++.
T Consensus 229 ~~~~~~~~~i~pf~aCgdl~~~Dsd~tYp~~--~~~~s~~~dpvq~p~~p~Yk~al~~k~~~~~~~ 292 (294)
T KOG1099|consen 229 AELEEPDRVIVPFVACGDLGGYDSDRTYPSE--AGESSVSLDPVQPPTAPPYKAALELKSSGNLAK 292 (294)
T ss_pred ccccCCCceecceEEeccccCCCCCCCCccc--cCCccccCCCCCCCCchHHHHHHHHhhcchhhc
Confidence 6778899999999999999999999999873 344568999999999999999999999887654
No 2
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.6e-55 Score=388.54 Aligned_cols=197 Identities=43% Similarity=0.660 Sum_probs=190.5
Q ss_pred CCCCCcHHHHHHHHhCCchhhhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEE
Q 021161 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAI 84 (316)
Q Consensus 5 s~~~rd~yyr~ak~~g~raRsa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaV 84 (316)
.++.+|.||++||++|||+||||||+||+++|++|+++++|+|||||||||||+++++++ ..++|+||
T Consensus 9 ~~~~~D~Y~~~Ak~~gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~------------~~~~ivav 76 (205)
T COG0293 9 AEHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLG------------AGGKIVAV 76 (205)
T ss_pred HHhhcCHHHHHHhhccccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhC------------CCCcEEEE
Confidence 458899999999999999999999999999999999999999999999999999999986 34679999
Q ss_pred eCCCCCCCCCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEE
Q 021161 85 DLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (316)
Q Consensus 85 Dl~~~~~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV 164 (316)
|++||.+++||.++|+|||+.++..+|.+.+++.++|+|+||+||+++|+++.|++++.+|+..++..|..+|+|||+|+
T Consensus 77 Di~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 77 DILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred ECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCHHHHHHHHHhcCCceEEecCCCCCCCCcceEEEEecccCCC
Q 021161 165 AKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPE 213 (316)
Q Consensus 165 ~Kif~~~~~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~fvVc~gf~~p~ 213 (316)
+|+|+|.+...+++.++.+|+.|.+.||.+||..|.|.|+||.+|+++.
T Consensus 157 ~K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~~~~~~ 205 (205)
T COG0293 157 AKVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKGFKGKE 205 (205)
T ss_pred EEEEeCCCHHHHHHHHHHhhceeEEecCccccCCCceEEEEEeccccCC
Confidence 9999999999999999999999999999999999999999999999763
No 3
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.7e-49 Score=346.23 Aligned_cols=197 Identities=32% Similarity=0.558 Sum_probs=190.4
Q ss_pred CCCCcHHHHHHHHhCCchhhhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEe
Q 021161 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAID 85 (316)
Q Consensus 6 ~~~rd~yyr~ak~~g~raRsa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVD 85 (316)
++-+|+|.++||.++||+||||||+|||++|+|++++.+|||+|||||+|||++.++.+ +.+.|.|||
T Consensus 34 Rql~Dpy~kkAkv~NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~------------p~g~v~gVD 101 (232)
T KOG4589|consen 34 RQLKDPYVKKAKVQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVN------------PNGMVLGVD 101 (232)
T ss_pred HhccCHHHHHHHHhhhhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhC------------CCceEEEEe
Confidence 46789999999999999999999999999999999999999999999999999999985 679999999
Q ss_pred CCCCCCCCCcEEEec-CccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEE
Q 021161 86 LQPMAPIEGVIQVQG-DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (316)
Q Consensus 86 l~~~~~i~gV~~i~g-DIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV 164 (316)
|+++.|++|+++++| |||++.+..+|.+.+++.++|+|+|||+|+.||.+..|++..+.|+.++|..+...++|+|+||
T Consensus 102 llh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 102 LLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred eeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 999999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCHHHHHHHHHhcCCceEEecCCCCCCCCcceEEEEecccCCCC
Q 021161 165 AKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEG 214 (316)
Q Consensus 165 ~Kif~~~~~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~fvVc~gf~~p~~ 214 (316)
||++.|.+...+...|..+|..|+.+||.+||..|.|.|+||++|++..+
T Consensus 182 cK~w~g~e~~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k~~~d 231 (232)
T KOG4589|consen 182 CKLWDGSEEALLQRRLQAVFTNVKKVKPDASRDESAETYLVCLNFKGNVD 231 (232)
T ss_pred EEEecCCchHHHHHHHHHHhhhcEeeCCccccccccceeeeeeeccCcCC
Confidence 99999999999999999999999999999999999999999999998653
No 4
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=100.00 E-value=4.3e-46 Score=369.27 Aligned_cols=212 Identities=41% Similarity=0.655 Sum_probs=201.9
Q ss_pred CCC---CCCCCCcHHHHHHHHhCCchhhhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCC
Q 021161 1 MGK---ASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGD 77 (316)
Q Consensus 1 mg~---~s~~~rd~yyr~ak~~g~raRsa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~ 77 (316)
||| +.|.++|.|||+||+.|||+||||||+||+.+|.|++++..|||||||||||.||+++.++ .
T Consensus 1 MGKk~~~gk~r~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~p------------v 68 (780)
T KOG1098|consen 1 MGKKKKSGKGRLDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMP------------V 68 (780)
T ss_pred CCccccCCCccchHHHHHHHHhchhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCC------------C
Confidence 887 6778899999999999999999999999999999999999999999999999999999997 4
Q ss_pred CCEEEEEeCCCCCCCCCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcc
Q 021161 78 LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVL 157 (316)
Q Consensus 78 ~~~IvaVDl~~~~~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vL 157 (316)
+..||||||-|+.|++|+..++.|||...+-..+...+.-.++|+|++||+|+|.|.|..|.+.|++|.+.+|.+|+..|
T Consensus 69 ~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l 148 (780)
T KOG1098|consen 69 GSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFL 148 (780)
T ss_pred CceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 57999999999999999999999999987766676666677899999999999999999999999999999999999999
Q ss_pred cCCcEEEEEEccCCCHHHHHHHHHhcCCceEEecCCCCCCCCcceEEEEecccCCCCCCCccchhhh
Q 021161 158 KEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLL 224 (316)
Q Consensus 158 kpGG~fV~Kif~~~~~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~fvVc~gf~~p~~~~p~~~~~~~ 224 (316)
+.||+||.|+|++.+...|++.+..+|..|...||.+||+.|.|.|+||.||..|....|.+++|.+
T Consensus 149 ~~~g~fvtkvfrs~dy~~ll~v~~qLf~kv~~tkp~asr~~saeif~vc~~~l~P~~~dp~~ld~~~ 215 (780)
T KOG1098|consen 149 AKGGTFVTKVFRSEDYNGLLRVFGQLFKKVEATKPAASRSESAEIFVVCLGYLAPKKVDPRLLDPKL 215 (780)
T ss_pred HhcCccccccccCCcchHHHHHHHHHHHHHHhcCChhhhhhccceeeeeecccCccccCccccCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998876
No 5
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=100.00 E-value=1e-42 Score=314.24 Aligned_cols=194 Identities=31% Similarity=0.481 Sum_probs=181.0
Q ss_pred CCCCcHHHHHHHHhCCchhhhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEe
Q 021161 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAID 85 (316)
Q Consensus 6 ~~~rd~yyr~ak~~g~raRsa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVD 85 (316)
++.+|.||++||+++||+|++|||.||+++|++++++.+|||||||||+|+++++++.+ ..++|+|||
T Consensus 16 ~~~~d~~~~~~~~~~~~~r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~------------~~~~V~aVD 83 (209)
T PRK11188 16 EHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIG------------DKGRVIACD 83 (209)
T ss_pred HhhcCHHHHHHhhcCCchhHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcC------------CCceEEEEe
Confidence 46689999999999999999999999999999999999999999999999999999874 357999999
Q ss_pred CCCCCCCCCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 86 LQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 86 l~~~~~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
+++|.++++|+++++|+++..++++|.+.+..++||+|+||++|..+|.+..|...+..++..+|..+.++|+|||.|++
T Consensus 84 i~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 84 ILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred cccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 99999999999999999999888888888877899999999999999887777766666778899999999999999999
Q ss_pred EEccCCCHHHHHHHHHhcCCceEEecCCCCCCCCcceEEEEecccC
Q 021161 166 KIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFP 211 (316)
Q Consensus 166 Kif~~~~~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~fvVc~gf~~ 211 (316)
|+|++.++..++..++.+|+.|.++||.+||..|.|.|+||+||++
T Consensus 164 ~~~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~~~~~ 209 (209)
T PRK11188 164 KVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKL 209 (209)
T ss_pred EEecCcCHHHHHHHHHhCceEEEEECCccccccCceeEEEeecccC
Confidence 9999999999999999999999999999999999999999999974
No 6
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=100.00 E-value=4e-42 Score=301.96 Aligned_cols=177 Identities=42% Similarity=0.676 Sum_probs=155.1
Q ss_pred CchhhhhhHHhhhHHcCCcCCC--CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCCCCCcEEE
Q 021161 21 WRARSAFKLLQIDEEFNIFEGV--KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQV 98 (316)
Q Consensus 21 ~raRsa~KL~qId~~f~~~~~~--~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~i~gV~~i 98 (316)
||+||||||.||+++|++++++ .+|||||||||||||+++++.. ..++|+|||+.++.+++++.++
T Consensus 1 yvsRa~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~------------~~~~v~avDl~~~~~~~~~~~i 68 (181)
T PF01728_consen 1 YVSRAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGG------------PAGRVVAVDLGPMDPLQNVSFI 68 (181)
T ss_dssp SSSTHHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTT------------TEEEEEEEESSSTGS-TTEEBT
T ss_pred CCCHHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeeccc------------ccceEEEEeccccccccceeee
Confidence 8999999999999999988764 8999999999999999999873 3579999999999999999999
Q ss_pred ecCccChhhHHHHHhhcCC--ccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHH
Q 021161 99 QGDITNARTAEVVIRHFDG--CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (316)
Q Consensus 99 ~gDIt~~~t~~~I~~~~~~--~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l 176 (316)
+||+++..+.+.|.+.+.. +++|+|+||++|+++|.++.|++.+.+|++.++..+..+|++||+||+|+|.+.....+
T Consensus 69 ~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~ 148 (181)
T PF01728_consen 69 QGDITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEEL 148 (181)
T ss_dssp TGGGEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHH
T ss_pred ecccchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHH
Confidence 9999999888888777653 79999999999999999999999999999999999999999999999999998776799
Q ss_pred HHHHHhcCCceEEecCCCCCCCCcceEEEEecc
Q 021161 177 YCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENY 209 (316)
Q Consensus 177 ~~~l~~~F~~V~~~KP~sSR~~S~E~fvVc~gf 209 (316)
+..++.+|+.|.++||.+||..|+|.|+||+||
T Consensus 149 ~~~l~~~F~~v~~~Kp~~sr~~s~E~Ylv~~~f 181 (181)
T PF01728_consen 149 IYLLKRCFSKVKIVKPPSSRSESSEEYLVCRGF 181 (181)
T ss_dssp HHHHHHHHHHEEEEE-TTSBTTCBEEEEESEEE
T ss_pred HHHHHhCCeEEEEEECcCCCCCccEEEEEEcCC
Confidence 999999999999999999999999999999997
No 7
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=100.00 E-value=1.2e-32 Score=243.63 Aligned_cols=188 Identities=36% Similarity=0.659 Sum_probs=171.3
Q ss_pred cHHHHHHHHhCCchhhhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC
Q 021161 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (316)
Q Consensus 10 d~yyr~ak~~g~raRsa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~ 89 (316)
|.||+.|++++||+|.+|||.+++++++.++++.+|||+|||||+++..++++.. ..++|+++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~------------~~~~v~~vDis~~ 68 (188)
T TIGR00438 1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVG------------GKGRVIAVDLQPM 68 (188)
T ss_pred CHHHHHHhhcCCchhHHHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhC------------CCceEEEEecccc
Confidence 6899999999999999999999999999999999999999999999999998864 3468999999998
Q ss_pred CCCCCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 90 APIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 90 ~~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
...+++.++++|+++......+.+.+...++|+|+||++|...|.++.++.....+...++..+.++|+|||+|++.++.
T Consensus 69 ~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 69 KPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred ccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 76778999999999877666666667777899999999888888888887776667788999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCceEEecCCCCCCCCcceEEEEecc
Q 021161 170 GKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENY 209 (316)
Q Consensus 170 ~~~~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~fvVc~gf 209 (316)
..+...++..++..|..+.+.|+.+||..|+|+||||.||
T Consensus 149 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T TIGR00438 149 GEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKRF 188 (188)
T ss_pred CccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEecC
Confidence 9999999999988999999999999999999999999997
No 8
>KOG3674 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=99.83 E-value=7.2e-21 Score=185.64 Aligned_cols=192 Identities=26% Similarity=0.318 Sum_probs=149.9
Q ss_pred CCchhhhhhHHhhhHHcCCc-CCCC--eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------
Q 021161 20 GWRARSAFKLLQIDEEFNIF-EGVK--RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------ 90 (316)
Q Consensus 20 g~raRsa~KL~qId~~f~~~-~~~~--rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------ 90 (316)
.....+|+||-||.+.|.+. .++- ..++||.|||.|...|.+.+....- ......+.+|-.|+|.-
T Consensus 108 e~~T~AwcKl~Eil~~fpl~~~ea~~inS~HLCEaPGaFIaslnhyL~s~r~-----k~~~~W~W~anTLNPY~E~n~~~ 182 (696)
T KOG3674|consen 108 ENVTKAWCKLCEILEVFPLDIFEASSINSFHLCEAPGAFIASLNHYLMSSRG-----KNMSYWKWGANTLNPYFENNSCF 182 (696)
T ss_pred HHHHHHHHHHHHHHHhcCccccccccccceeeecCccHHHHHHHHHHHhccC-----CccceeeeccCccCcccccchHH
Confidence 35568899999999999985 3333 7899999999999999887642100 00112356666666621
Q ss_pred -----------CCCCcEE---EecCccChhhHHHHHh--hcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHH
Q 021161 91 -----------PIEGVIQ---VQGDITNARTAEVVIR--HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVT 154 (316)
Q Consensus 91 -----------~i~gV~~---i~gDIt~~~t~~~I~~--~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~ 154 (316)
.+.+..| ..|||.+......+.+ .+. +.+|||++||+.|+.|..+.+|.+...|+.+....|+
T Consensus 183 ~mi~DDr~I~~Tld~WyFgpd~tGdi~~~~~~~~l~~~v~~~-gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~AL 261 (696)
T KOG3674|consen 183 DMIIDDRHIRPTLDQWYFGPDDTGDIEKFTEEYLLKQEVKLA-GTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVAL 261 (696)
T ss_pred HHhccchhhhccccceeeCCCCCccHHHHHHHHHHHHHHHhh-ceEEEEecCCccccCCCCccHHHHHHHHHHHHHHHHH
Confidence 1223322 4688888765554544 233 6899999999999999999999999999999999999
Q ss_pred HcccCCcEEEEEEccC--CCHHHHHHHHHhcCCceEEecCCCCCCCCcceEEEEecccCCCCCCC
Q 021161 155 HVLKEGGKFIAKIFRG--KDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNP 217 (316)
Q Consensus 155 ~vLkpGG~fV~Kif~~--~~~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~fvVc~gf~~p~~~~p 217 (316)
++|+.||+|++|+|+- .....+++.|...|++|+++||.+||..|+|.||||.|||+.++.-|
T Consensus 262 ~~L~~gG~filKmft~fe~cS~~lmylLnc~F~~Vh~fKPatSk~GnSEvYVvCl~yK~~~~l~~ 326 (696)
T KOG3674|consen 262 KLLRRGGRFILKMFTFFEKCSRDLMYLLNCNFSSVHAFKPATSKPGNSEVYVVCLGYKDHPDLPR 326 (696)
T ss_pred HHHhcCCeehHHHHHHHHHhhHHHHHHHHhhHhhhhccccccCCCCCceEEEEecccCCCccchh
Confidence 9999999999999973 34456888899999999999999999999999999999998776543
No 9
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=99.83 E-value=4.4e-21 Score=188.83 Aligned_cols=194 Identities=23% Similarity=0.386 Sum_probs=145.1
Q ss_pred HHhCCchhhhhhHHhhhHHcCCc-CC-----C-----------CeEEEECCCCCHHHHHHHHHhCCCCCCCCCC-CCCCC
Q 021161 17 KEEGWRARSAFKLLQIDEEFNIF-EG-----V-----------KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDS-REGDL 78 (316)
Q Consensus 17 k~~g~raRsa~KL~qId~~f~~~-~~-----~-----------~rVLDLcagPG~wSq~La~~l~~~~~~~~~~-~~~~~ 78 (316)
+..-+-+|+|.|+..+|.-|+++ .+ | .-..|+||||||||.++..|-...++++|.. .+..+
T Consensus 226 rs~fFlNRAAmKmANmD~i~d~mftNpRdp~g~~lva~~~~eLlYFaDvCAGPGGFSEYvLwRK~w~AKGFGfTL~G~nD 305 (845)
T KOG3673|consen 226 RSAFFLNRAAMKMANMDKIYDWMFTNPRDPLGESLVAENVEELLYFADVCAGPGGFSEYVLWRKFWNAKGFGFTLAGKND 305 (845)
T ss_pred HHHHHhhHHHHHhhhHHHHHHHHhCCCCCcccCccccccHHHHHHHHhhhcCCCccchhhhhhhhhccccceeEeccCCc
Confidence 33446789999999999999874 11 1 2456899999999999876544344444421 11111
Q ss_pred CEE---EEEeCCCCCCCCCcEEEecCccChhhHHHHHhhc----CCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHH
Q 021161 79 PLI---VAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHF----DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLT 151 (316)
Q Consensus 79 ~~I---vaVDl~~~~~i~gV~~i~gDIt~~~t~~~I~~~~----~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~ 151 (316)
-+. +|-----..+..|+ --.|||+++.+...+.++. .+..+++.++||.+.|.|..+++|.++.||.++.+.
T Consensus 306 FKLekF~aaS~e~FetfYG~-k~dGdi~dp~Nidsl~~~i~~~T~~~GVHf~MADGGFSVEGQeNiQEILSKqLyLCQfL 384 (845)
T KOG3673|consen 306 FKLEKFTAASQEFFETFYGT-KDDGDIMDPVNIDSLEAHISRGTSGLGVHFMMADGGFSVEGQENIQEILSKQLYLCQFL 384 (845)
T ss_pred cchhhhhhcCHHhhhccccc-cCCCCcCCccchHHHHHHHhcCCCCcceEEEEecCCccccchhhHHHHHHHHHHHHHHH
Confidence 111 11100001234564 3468999998877665543 456799999999999999999999999999999999
Q ss_pred HHHHcccCCcEEEEEEcc---CCCHHHHHHHHHhcCCceEEecCCCCCCCCcceEEEEecccCC
Q 021161 152 VVTHVLKEGGKFIAKIFR---GKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPP 212 (316)
Q Consensus 152 ~a~~vLkpGG~fV~Kif~---~~~~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~fvVc~gf~~p 212 (316)
.|+.++++||+|+||+|. +..+. |.++|..+|++|.+.||.+||++++|+||||+|.+.-
T Consensus 385 ~aL~IvR~gG~F~CK~FDlFTPFSVG-LvYLmy~Cfq~v~l~KP~tSRPANSERYivCKglr~~ 447 (845)
T KOG3673|consen 385 VALCIVREGGNFFCKLFDLFTPFSVG-LVYLMYVCFQSVSLHKPHTSRPANSERYIVCKGLRKE 447 (845)
T ss_pred HHheeeecCCeEEEeeecccCcchhh-HHHHHHHHHHHhhcccCCCCCCCCCceeEEecchhhh
Confidence 999999999999999876 33444 5667888999999999999999999999999998754
No 10
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.49 E-value=5.7e-14 Score=129.08 Aligned_cols=117 Identities=26% Similarity=0.424 Sum_probs=76.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
+++.+|||||||||.++..++++++ +.++|+++|+++-+ ...+|+++++|+++++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~------------~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-- 111 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVG------------PNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-- 111 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---------------EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCC------------CccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc--
Confidence 6788999999999999999998875 45799999999831 2458999999999975
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhcCCce
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVV 187 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~F~~V 187 (316)
+++++||+|+|- .|+++.... ..+|.++.++|||||+|++--|.......+...+..+|..+
T Consensus 112 ------~~d~sfD~v~~~-----fglrn~~d~------~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~i 173 (233)
T PF01209_consen 112 ------FPDNSFDAVTCS-----FGLRNFPDR------ERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYI 173 (233)
T ss_dssp ------S-TT-EEEEEEE-----S-GGG-SSH------HHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-----
T ss_pred ------CCCCceeEEEHH-----hhHHhhCCH------HHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccc
Confidence 567899999985 356665432 46789999999999999987776555555555555556543
No 11
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=4.2e-13 Score=123.54 Aligned_cols=106 Identities=24% Similarity=0.364 Sum_probs=87.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
.+|.+|||+|||||-++..+++..+ .++|+++|+++-+ ...++.+++||+.+++
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g-------------~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-- 114 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVG-------------TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-- 114 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC-------------CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC--
Confidence 3799999999999999999999874 5899999999832 1234889999999875
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHH
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLY 177 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~ 177 (316)
|++.+||+|++. .|+++..+. ..+|.++.|+|||||.+++--|.......+.
T Consensus 115 ------f~D~sFD~vt~~-----fglrnv~d~------~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~ 166 (238)
T COG2226 115 ------FPDNSFDAVTIS-----FGLRNVTDI------DKALKEMYRVLKPGGRLLVLEFSKPDNPVLR 166 (238)
T ss_pred ------CCCCccCEEEee-----ehhhcCCCH------HHHHHHHHHhhcCCeEEEEEEcCCCCchhhH
Confidence 788999999984 577777653 6789999999999999999888765554443
No 12
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=99.40 E-value=2.3e-12 Score=123.61 Aligned_cols=88 Identities=32% Similarity=0.385 Sum_probs=72.3
Q ss_pred HhCCchhhhhhHHhhhHHcC-------CcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC
Q 021161 18 EEGWRARSAFKLLQIDEEFN-------IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA 90 (316)
Q Consensus 18 ~~g~raRsa~KL~qId~~f~-------~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~ 90 (316)
..+-++||+|||.|+...|. ++.+|+++|||||+|||||++|.++. .+|+|||..+|+
T Consensus 181 p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG---------------~~V~AVD~g~l~ 245 (357)
T PRK11760 181 PADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRG---------------MFVTAVDNGPMA 245 (357)
T ss_pred CCCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcC---------------CEEEEEechhcC
Confidence 34678999999999966664 56899999999999999999999863 599999999987
Q ss_pred C----CCCcEEEecCccChhhHHHHHhhcCCccccEEEeCCC
Q 021161 91 P----IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (316)
Q Consensus 91 ~----i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDga 128 (316)
+ .++|+.+++|...... ..+.+|+|+||+.
T Consensus 246 ~~L~~~~~V~h~~~d~fr~~p--------~~~~vDwvVcDmv 279 (357)
T PRK11760 246 QSLMDTGQVEHLRADGFKFRP--------PRKNVDWLVCDMV 279 (357)
T ss_pred HhhhCCCCEEEEeccCcccCC--------CCCCCCEEEEecc
Confidence 5 4689999988765321 1468999999985
No 13
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.39 E-value=1.5e-12 Score=129.99 Aligned_cols=131 Identities=23% Similarity=0.320 Sum_probs=92.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
+++.+|||+|||||+++.+++++++ +.++|+|+|+++.+ .+.+|+++++|+++..
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~------------~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-- 314 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLK------------NTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH-- 314 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc--
Confidence 5678999999999999999999874 35799999999842 2456889999998642
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCc-----------cHHHHHHHHHHHHHHHHHcccCCcEEEE---EEccCCCHH
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDM-----------DEFVQSQLILAGLTVVTHVLKEGGKFIA---KIFRGKDTS 174 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~-----------de~~~~~L~~aaL~~a~~vLkpGG~fV~---Kif~~~~~~ 174 (316)
..+. ++||+|++|+++...|.... +......++...|..+.++|||||+||. +++..++..
T Consensus 315 ----~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~ 389 (444)
T PRK14902 315 ----EKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEE 389 (444)
T ss_pred ----chhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHH
Confidence 1123 57999999976444443211 1112244567789999999999999994 444456666
Q ss_pred HHHHHHHhc--CCceEE
Q 021161 175 LLYCQLKLF--FPVVTF 189 (316)
Q Consensus 175 ~l~~~l~~~--F~~V~~ 189 (316)
.+...++.+ |+.+.+
T Consensus 390 vv~~~l~~~~~~~~~~~ 406 (444)
T PRK14902 390 VIEAFLEEHPEFELVPL 406 (444)
T ss_pred HHHHHHHhCCCcEEecc
Confidence 666667763 444443
No 14
>PTZ00146 fibrillarin; Provisional
Probab=99.38 E-value=1.5e-11 Score=116.21 Aligned_cols=123 Identities=18% Similarity=0.137 Sum_probs=85.3
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC--------C-CCCCcEEEecCccChhhHH
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------A-PIEGVIQVQGDITNARTAE 109 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~--------~-~i~gV~~i~gDIt~~~t~~ 109 (316)
++++.+|||||||||.|++++++.+. +.++|+|||+++. + ..+||.++.+|++++....
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG------------~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~ 197 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVG------------PEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYR 197 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhC------------CCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhh
Confidence 57889999999999999999999985 4579999999972 1 2368999999998753211
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc-----CCCHHHH----HHHH
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR-----GKDTSLL----YCQL 180 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~-----~~~~~~l----~~~l 180 (316)
.+. .++|+|++|.+. .|+. ..++..+.++|||||.|++++-. +.....+ ...|
T Consensus 198 ----~~~-~~vDvV~~Dva~-------pdq~------~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L 259 (293)
T PTZ00146 198 ----MLV-PMVDVIFADVAQ-------PDQA------RIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKL 259 (293)
T ss_pred ----ccc-CCCCEEEEeCCC-------cchH------HHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHH
Confidence 122 479999999851 2221 12334578899999999996432 2233333 2445
Q ss_pred Hhc-CCceEEec
Q 021161 181 KLF-FPVVTFAK 191 (316)
Q Consensus 181 ~~~-F~~V~~~K 191 (316)
+.. |+.+....
T Consensus 260 ~~~GF~~~e~v~ 271 (293)
T PTZ00146 260 KKEGLKPKEQLT 271 (293)
T ss_pred HHcCCceEEEEe
Confidence 554 87665554
No 15
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.38 E-value=5.4e-12 Score=116.56 Aligned_cols=150 Identities=19% Similarity=0.276 Sum_probs=109.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CC-CCcEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i-~gV~~i~gDIt~~~t 107 (316)
....+|||||||.|..+..+++|.. .++|++||+++.+ ++ +.|+++++|+.+..
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~-------------~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~- 108 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTE-------------KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL- 108 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCC-------------CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh-
Confidence 4578999999999999999999863 4899999999842 12 46899999998753
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCC-CccHHHH-----HH-HHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHH
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLH-DMDEFVQ-----SQ-LILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~-~~de~~~-----~~-L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l 180 (316)
.+....+||+|+||.+..-.|.. +.++... .. .+.+.+..|.++||+||.|.+ +.+.+...+++..+
T Consensus 109 -----~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~-V~r~erl~ei~~~l 182 (248)
T COG4123 109 -----KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF-VHRPERLAEIIELL 182 (248)
T ss_pred -----hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE-EecHHHHHHHHHHH
Confidence 23444579999999865444443 3332211 11 246778999999999999999 88888888888888
Q ss_pred Hhc---CCceEEecCCCCCCCCcceEEEEecccCC
Q 021161 181 KLF---FPVVTFAKPKSSRNSSIEAFAVCENYFPP 212 (316)
Q Consensus 181 ~~~---F~~V~~~KP~sSR~~S~E~fvVc~gf~~p 212 (316)
+.+ -+++..+.|+..+++.. ++-++-+..
T Consensus 183 ~~~~~~~k~i~~V~p~~~k~A~~---vLv~~~k~~ 214 (248)
T COG4123 183 KSYNLEPKRIQFVYPKIGKAANR---VLVEAIKGG 214 (248)
T ss_pred HhcCCCceEEEEecCCCCCcceE---EEEEEecCC
Confidence 874 36788888887776443 343444443
No 16
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.37 E-value=4.9e-12 Score=118.08 Aligned_cols=124 Identities=20% Similarity=0.144 Sum_probs=88.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
+++.+|||+|||||++|.++++.+. ..+.|+|+|+++.+ .+.+|.++++|.++...
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~------------~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~- 136 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMK------------NEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA- 136 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcC------------CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh-
Confidence 5788999999999999999999875 34699999999842 24567888888765321
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHH-----------HHHHHHHHHHHHHHHcccCCcEEEEEEccC---CCHH
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEF-----------VQSQLILAGLTVVTHVLKEGGKFIAKIFRG---KDTS 174 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~-----------~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~---~~~~ 174 (316)
...+||.|++|+++..+|....+.. ...+++...|..+.++|||||.+|..+..- ++..
T Consensus 137 -------~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~ 209 (264)
T TIGR00446 137 -------AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEA 209 (264)
T ss_pred -------hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHH
Confidence 1246999999987665554332211 123456778999999999999999876542 2344
Q ss_pred HHHHHHHhc
Q 021161 175 LLYCQLKLF 183 (316)
Q Consensus 175 ~l~~~l~~~ 183 (316)
.+.+.++.+
T Consensus 210 vv~~~l~~~ 218 (264)
T TIGR00446 210 VVDYLLEKR 218 (264)
T ss_pred HHHHHHHhC
Confidence 455666654
No 17
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.35 E-value=9.7e-12 Score=123.85 Aligned_cols=128 Identities=18% Similarity=0.144 Sum_probs=91.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
+++.+|||+|||||+++.++++.++ +.++|+|+|+++.+ .+.+|+++.+|+++....
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~------------~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMG------------DQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL 318 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhC------------CCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc
Confidence 5689999999999999999999874 35799999999832 245688899998864210
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCC--CccH---------HHHHHHHHHHHHHHHHcccCCcEEEEEEcc---CCCHH
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLH--DMDE---------FVQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~--~~de---------~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~---~~~~~ 174 (316)
. .+..++||.|++|+++..+|.. ..+. ....+++...|..+.++|||||.||..++. .++..
T Consensus 319 ---~-~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~ 394 (434)
T PRK14901 319 ---K-PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEA 394 (434)
T ss_pred ---c-ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHH
Confidence 0 0123579999999865544542 1111 112345678899999999999999966543 45666
Q ss_pred HHHHHHHhc
Q 021161 175 LLYCQLKLF 183 (316)
Q Consensus 175 ~l~~~l~~~ 183 (316)
.+...++.+
T Consensus 395 ~v~~~l~~~ 403 (434)
T PRK14901 395 QIEQFLARH 403 (434)
T ss_pred HHHHHHHhC
Confidence 677777765
No 18
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.35 E-value=1.1e-11 Score=123.47 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=91.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
+++.+|||+|||||+.|.++++.++ +.++|+|+|+++-+ .+.+|.++++|.++...
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~------------~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~- 302 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMK------------DQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE- 302 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-
Confidence 5788999999999999999999874 35799999999842 24457888999876421
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccH-----------HHHHHHHHHHHHHHHHcccCCcEEEEEEcc---CCCHH
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDE-----------FVQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de-----------~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~---~~~~~ 174 (316)
+..++||.|++|+++..+|....+. ....+++...|..+.++|||||.+|..++. .++..
T Consensus 303 ------~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~ 376 (431)
T PRK14903 303 ------YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTE 376 (431)
T ss_pred ------hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHH
Confidence 1135799999998776666532211 112446678899999999999999988765 34555
Q ss_pred HHHHHHHhc
Q 021161 175 LLYCQLKLF 183 (316)
Q Consensus 175 ~l~~~l~~~ 183 (316)
.+.+.|..+
T Consensus 377 vv~~fl~~~ 385 (431)
T PRK14903 377 VVKRFVYEQ 385 (431)
T ss_pred HHHHHHHhC
Confidence 566666653
No 19
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.5e-11 Score=119.72 Aligned_cols=128 Identities=25% Similarity=0.307 Sum_probs=94.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
++|.+|||+||||||.|.++++.+. +.+..|+|+|+++.. .+.+|..+..|.......
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~-----------~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~ 223 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELME-----------NEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL 223 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcC-----------CCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc
Confidence 6789999999999999999999985 124567999999842 245666777776643211
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCcc-----------HHHHHHHHHHHHHHHHHcccCCcEEEEEEcc---CCCHH
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMD-----------EFVQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~d-----------e~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~---~~~~~ 174 (316)
...+.+||.|+.|.++..+|....+ -...++++...|..|.++|||||.+|..+.+ -++..
T Consensus 224 -----~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~ 298 (355)
T COG0144 224 -----LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEE 298 (355)
T ss_pred -----ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHH
Confidence 1233469999999988778764222 1223567788899999999999999977654 45666
Q ss_pred HHHHHHHhc
Q 021161 175 LLYCQLKLF 183 (316)
Q Consensus 175 ~l~~~l~~~ 183 (316)
.+...|+..
T Consensus 299 vV~~~L~~~ 307 (355)
T COG0144 299 VVERFLERH 307 (355)
T ss_pred HHHHHHHhC
Confidence 777888775
No 20
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.31 E-value=2.1e-11 Score=122.42 Aligned_cols=125 Identities=18% Similarity=0.162 Sum_probs=93.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
+++.+|||+||||||.|.+++..+. ..+.|+|+|+.+-. .+.+|.+...|.+...
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~------------~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~-- 177 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMN------------NQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG-- 177 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh--
Confidence 5789999999999999999999985 35799999999842 2456677777876532
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHH-----------HHHHHHHHHHHHHHHcccCCcEEEEEEcc---CCCHH
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEF-----------VQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~-----------~~~~L~~aaL~~a~~vLkpGG~fV~Kif~---~~~~~ 174 (316)
..+. ..||.|+.|..+..+|....+.. ..++++...|..|.++|||||++|..+++ -++..
T Consensus 178 ----~~~~-~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~ 252 (470)
T PRK11933 178 ----AALP-ETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQA 252 (470)
T ss_pred ----hhch-hhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHH
Confidence 1233 57999999988777776433321 23557788899999999999999987765 33555
Q ss_pred HHHHHHHhc
Q 021161 175 LLYCQLKLF 183 (316)
Q Consensus 175 ~l~~~l~~~ 183 (316)
.+.+.|+.+
T Consensus 253 vV~~~L~~~ 261 (470)
T PRK11933 253 VCLWLKETY 261 (470)
T ss_pred HHHHHHHHC
Confidence 566777765
No 21
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=3.3e-11 Score=119.84 Aligned_cols=125 Identities=21% Similarity=0.261 Sum_probs=90.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CC--CCcEEEecCccChhhHH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI--EGVIQVQGDITNARTAE 109 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i--~gV~~i~gDIt~~~t~~ 109 (316)
+++.+|||+|||||+++..++++++ +++|+|+|+++.+ .. .+++++++|+++...
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~-------------~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~-- 307 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAP-------------QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQ-- 307 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchh--
Confidence 5789999999999999999998863 3799999999842 11 136788999986421
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCc--------cHH---HHHHHHHHHHHHHHHcccCCcEEEEEE---ccCCCHHH
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDM--------DEF---VQSQLILAGLTVVTHVLKEGGKFIAKI---FRGKDTSL 175 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~--------de~---~~~~L~~aaL~~a~~vLkpGG~fV~Ki---f~~~~~~~ 175 (316)
.+..++||+|++|+++..+|.... .+. ....++...|..+.++|||||.+|..+ +..++...
T Consensus 308 ----~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~ 383 (427)
T PRK10901 308 ----WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQ 383 (427)
T ss_pred ----hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHH
Confidence 233468999999987655554211 111 123456778999999999999999654 45667777
Q ss_pred HHHHHHhc
Q 021161 176 LYCQLKLF 183 (316)
Q Consensus 176 l~~~l~~~ 183 (316)
+...++.+
T Consensus 384 v~~~l~~~ 391 (427)
T PRK10901 384 IKAFLARH 391 (427)
T ss_pred HHHHHHhC
Confidence 77777654
No 22
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.25 E-value=3.7e-11 Score=104.87 Aligned_cols=120 Identities=28% Similarity=0.274 Sum_probs=84.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~~ 109 (316)
+..+|||||||+|..+..++++.+ ..+|+++|+++.+ .+++++++.+|+.+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~-------------~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~---- 93 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP-------------DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA---- 93 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST-------------CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT----
T ss_pred cCCeEEEecCChHHHHHHHHHhCC-------------CCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc----
Confidence 678999999999999999998763 4689999999953 245588999998763
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhcCCceEE
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTF 189 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~F~~V~~ 189 (316)
+..++||+|+||.+. ..|.. .-.+++...+..+.++|+|||.|++-+-+......+ ++..|..|.+
T Consensus 94 -----~~~~~fD~Iv~NPP~-~~~~~-----~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~---l~~~f~~~~~ 159 (170)
T PF05175_consen 94 -----LPDGKFDLIVSNPPF-HAGGD-----DGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL---LKELFGDVEV 159 (170)
T ss_dssp -----CCTTCEEEEEE---S-BTTSH-----CHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH---HHHHHS--EE
T ss_pred -----ccccceeEEEEccch-hcccc-----cchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH---HHHhcCCEEE
Confidence 345799999999642 22221 122345667889999999999998844444445444 6778888877
Q ss_pred ec
Q 021161 190 AK 191 (316)
Q Consensus 190 ~K 191 (316)
.+
T Consensus 160 ~~ 161 (170)
T PF05175_consen 160 VA 161 (170)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 23
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.25 E-value=5.7e-11 Score=95.11 Aligned_cols=98 Identities=28% Similarity=0.341 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------------CCCCcEEEecCc-cChhh
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDI-TNART 107 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------------~i~gV~~i~gDI-t~~~t 107 (316)
|+.+|||||||+|.++..++++.+ ..+|+|||+++.+ ..++|+++++|+ ....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~- 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-------------GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD- 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-------------TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-------------CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-
Confidence 578999999999999999999653 5799999999831 246899999999 2221
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
...+||+|++++ .. .+..-+. .-...++..+.+.|+|||.|++..
T Consensus 67 --------~~~~~D~v~~~~-~~---~~~~~~~---~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 67 --------FLEPFDLVICSG-FT---LHFLLPL---DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp --------TSSCEEEEEECS-GS---GGGCCHH---HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------cCCCCCEEEECC-Cc---cccccch---hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 235799999987 21 1111111 223466788899999999999853
No 24
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.24 E-value=6.9e-11 Score=107.07 Aligned_cols=108 Identities=19% Similarity=0.296 Sum_probs=79.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
+++.+|||+|||+|.|+..+++..+ +.++|+++|+++.+ .+++++++++|+.+..
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 109 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVG------------PEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-- 109 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--
Confidence 5788999999999999999998874 35799999998731 2457889999987642
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHH
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 178 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~ 178 (316)
+..++||+|+++.. ++....+ ..++..+.++|+|||.+++-.+...+...+..
T Consensus 110 ------~~~~~fD~V~~~~~-----l~~~~~~------~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~ 162 (231)
T TIGR02752 110 ------FDDNSFDYVTIGFG-----LRNVPDY------MQVLREMYRVVKPGGKVVCLETSQPTIPGFKQ 162 (231)
T ss_pred ------CCCCCccEEEEecc-----cccCCCH------HHHHHHHHHHcCcCeEEEEEECCCCCChHHHH
Confidence 34578999998753 2333322 34578889999999999986554444443333
No 25
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.24 E-value=8.6e-11 Score=116.79 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=88.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCC-CcEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~-gV~~i~gDIt~~~t 107 (316)
+++.+|||+|||||+++.++++.++ .++|+|+|+++.+ .+. .++...+|..+...
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~-------------~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAP-------------QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcC-------------CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 4689999999999999999998873 4799999999842 122 12335677665321
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCC--c------cH---HHHHHHHHHHHHHHHHcccCCcEEEEEEcc---CCCH
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHD--M------DE---FVQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDT 173 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~--~------de---~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~---~~~~ 173 (316)
....++||.|++|+++..+|... . .. .....++...|..+.++|||||+||..++. .++.
T Consensus 304 ------~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene 377 (426)
T TIGR00563 304 ------WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENS 377 (426)
T ss_pred ------cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCH
Confidence 11346899999998776666521 1 11 122446678899999999999999987665 3566
Q ss_pred HHHHHHHHhc
Q 021161 174 SLLYCQLKLF 183 (316)
Q Consensus 174 ~~l~~~l~~~ 183 (316)
..+...|..+
T Consensus 378 ~~v~~~l~~~ 387 (426)
T TIGR00563 378 EQIKAFLQEH 387 (426)
T ss_pred HHHHHHHHhC
Confidence 6676777764
No 26
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.23 E-value=7.7e-11 Score=109.88 Aligned_cols=104 Identities=23% Similarity=0.355 Sum_probs=80.0
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------C------CCCcEEEecCccC
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P------IEGVIQVQGDITN 104 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~------i~gV~~i~gDIt~ 104 (316)
+.++.+|||||||+|.++..++++.+ +.++|+|+|+++.+ + .+++.++++|+.+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~------------~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVG------------SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 35788999999999999999988764 34799999999831 1 2468899999987
Q ss_pred hhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCH
Q 021161 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT 173 (316)
Q Consensus 105 ~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~ 173 (316)
.+ +++++||+|++..+ +|..++ ...++..+.++|||||.|++-.|...+.
T Consensus 139 lp--------~~~~sfD~V~~~~~-----l~~~~d------~~~~l~ei~rvLkpGG~l~i~d~~~~~~ 188 (261)
T PLN02233 139 LP--------FDDCYFDAITMGYG-----LRNVVD------RLKAMQEMYRVLKPGSRVSILDFNKSTQ 188 (261)
T ss_pred CC--------CCCCCEeEEEEecc-----cccCCC------HHHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence 54 55678999998653 343332 1467889999999999999987765443
No 27
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.23 E-value=8.8e-11 Score=117.38 Aligned_cols=123 Identities=22% Similarity=0.246 Sum_probs=89.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
.++.+|||+|||||+++.++++.+. ..++|+|+|+++.+ .+.+|+++++|+++..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~------------~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-- 314 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQ------------NRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-- 314 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhC------------CCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--
Confidence 4678999999999999999999874 34699999999942 2346788899987632
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCC--------ccHH---HHHHHHHHHHHHHHHcccCCcEEEEEEccC---CCHH
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD--------MDEF---VQSQLILAGLTVVTHVLKEGGKFIAKIFRG---KDTS 174 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~--------~de~---~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~---~~~~ 174 (316)
...+||+|++|.++..+|... .++. ...+++...|..+.++|||||.+|..++.- ++..
T Consensus 315 -------~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~ 387 (445)
T PRK14904 315 -------PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENEL 387 (445)
T ss_pred -------cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHH
Confidence 235799999997655555421 1111 123456778999999999999999887653 3455
Q ss_pred HHHHHHHhc
Q 021161 175 LLYCQLKLF 183 (316)
Q Consensus 175 ~l~~~l~~~ 183 (316)
.+...|+.+
T Consensus 388 ~v~~~l~~~ 396 (445)
T PRK14904 388 QIEAFLQRH 396 (445)
T ss_pred HHHHHHHhC
Confidence 566667654
No 28
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.19 E-value=6.8e-11 Score=111.13 Aligned_cols=110 Identities=21% Similarity=0.248 Sum_probs=89.8
Q ss_pred hhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCC-C
Q 021161 27 FKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-G 94 (316)
Q Consensus 27 ~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~-g 94 (316)
-|+-.+.++++ +++|++|||+|||.|+.+.+++++.+ ++|+||++++.+ .++ +
T Consensus 59 ~k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y~--------------v~V~GvTlS~~Q~~~~~~r~~~~gl~~~ 123 (283)
T COG2230 59 AKLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEYG--------------VTVVGVTLSEEQLAYAEKRIAARGLEDN 123 (283)
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHcC--------------CEEEEeeCCHHHHHHHHHHHHHcCCCcc
Confidence 45666666666 48999999999999999999999863 899999999853 244 6
Q ss_pred cEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCC
Q 021161 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (316)
Q Consensus 95 V~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~ 171 (316)
|+++..|..+.. ++||-|||-|++...|.++.+.| +..+.++|+|||.+++-.+...
T Consensus 124 v~v~l~d~rd~~-----------e~fDrIvSvgmfEhvg~~~~~~f---------f~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 124 VEVRLQDYRDFE-----------EPFDRIVSVGMFEHVGKENYDDF---------FKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred cEEEeccccccc-----------cccceeeehhhHHHhCcccHHHH---------HHHHHhhcCCCceEEEEEecCC
Confidence 778888887642 45999999999999888887765 7788999999999998776543
No 29
>PRK04266 fibrillarin; Provisional
Probab=99.18 E-value=1.3e-10 Score=106.42 Aligned_cols=97 Identities=20% Similarity=0.256 Sum_probs=73.0
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC---------CCCCCcEEEecCccChhhHH
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~---------~~i~gV~~i~gDIt~~~t~~ 109 (316)
++++.+|||+|||||.|+.++++.++ .++|+|+|+++. ....+|.++.+|++++....
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-------------~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~ 136 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-------------EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYA 136 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-------------CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhh
Confidence 46889999999999999999998873 369999999983 12468999999998642111
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
.+. ++||+|++|++. .+. ...++..+.++|||||.|++.
T Consensus 137 ----~l~-~~~D~i~~d~~~-------p~~------~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 137 ----HVV-EKVDVIYQDVAQ-------PNQ------AEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred ----hcc-ccCCEEEECCCC-------hhH------HHHHHHHHHHhcCCCcEEEEE
Confidence 123 469999998641 111 123578889999999999984
No 30
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.16 E-value=2.3e-10 Score=101.32 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=75.8
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~~~ 110 (316)
+.+|||+|||+|.++..++... +.++|+|||.++.+ .+++++++++|+.+..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~-------------~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~---- 105 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIAR-------------PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ---- 105 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHC-------------CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc----
Confidence 7899999999999999988654 34789999999831 2457899999987631
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHh
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 182 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~ 182 (316)
..++||+|+|++ .++.+ ..+..+.++|+|||.+++- ++......+....++
T Consensus 106 -----~~~~fD~I~s~~------~~~~~---------~~~~~~~~~LkpgG~lvi~-~~~~~~~~~~~~~e~ 156 (181)
T TIGR00138 106 -----HEEQFDVITSRA------LASLN---------VLLELTLNLLKVGGYFLAY-KGKKYLDEIEEAKRK 156 (181)
T ss_pred -----ccCCccEEEehh------hhCHH---------HHHHHHHHhcCCCCEEEEE-cCCCcHHHHHHHHHh
Confidence 236899999975 22222 3456678999999999984 455556666655544
No 31
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.12 E-value=2.4e-10 Score=105.63 Aligned_cols=114 Identities=25% Similarity=0.288 Sum_probs=82.4
Q ss_pred hCCchhhhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCC
Q 021161 19 EGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEG 94 (316)
Q Consensus 19 ~g~raRsa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~g 94 (316)
...|.+...+|++. .. ..++.+|||||||+|.++..++++.+ +.+|+|+|+++.+ .-.+
T Consensus 11 ~~~~~~~~~~ll~~---l~-~~~~~~vLDlGcG~G~~~~~l~~~~p-------------~~~v~gvD~s~~~~~~a~~~~ 73 (255)
T PRK14103 11 ADHRGRPFYDLLAR---VG-AERARRVVDLGCGPGNLTRYLARRWP-------------GAVIEALDSSPEMVAAARERG 73 (255)
T ss_pred HhHhhCHHHHHHHh---CC-CCCCCEEEEEcCCCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHhcC
Confidence 34556666666553 22 25678999999999999999998763 4689999999842 2347
Q ss_pred cEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 95 V~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
+.++++|+.+. ...++||+|+|+.... |..+. ..++..+.++|||||.|++.+..
T Consensus 74 ~~~~~~d~~~~---------~~~~~fD~v~~~~~l~----~~~d~-------~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 74 VDARTGDVRDW---------KPKPDTDVVVSNAALQ----WVPEH-------ADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CcEEEcChhhC---------CCCCCceEEEEehhhh----hCCCH-------HHHHHHHHHhCCCCcEEEEEcCC
Confidence 88999998653 1236899999986432 11121 35678889999999999987543
No 32
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.11 E-value=2.6e-10 Score=97.13 Aligned_cols=100 Identities=22% Similarity=0.362 Sum_probs=76.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
+.+.+|||||||+|.++..++++++ +..+|++||+++.+ .+++++++++|+++.+.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~------------~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~- 68 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELN------------PGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQ- 68 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHST------------TTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCG-
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcC------------CCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcccc-
Confidence 4678999999999999999997664 45799999999932 35689999999998541
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
.+. ++||+|+++++. +.... ....+..+.++|++||.+++..+.
T Consensus 69 -----~~~-~~~D~I~~~~~l-----~~~~~------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 69 -----ELE-EKFDIIISNGVL-----HHFPD------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -----CSS-TTEEEEEEESTG-----GGTSH------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -----ccC-CCeeEEEEcCch-----hhccC------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 122 689999999754 21221 135678899999999999987766
No 33
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.10 E-value=1.4e-09 Score=96.95 Aligned_cols=96 Identities=21% Similarity=0.197 Sum_probs=73.4
Q ss_pred CCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccCh
Q 021161 37 NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNA 105 (316)
Q Consensus 37 ~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~ 105 (316)
.+++++.+|||+|||+|..+..++++. +.++|+++|.++.+ .+.+++++++|+.+.
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~-------------~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~ 107 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIAR-------------PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF 107 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHC-------------CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC
Confidence 345668999999999999999998765 35799999999731 245689999998764
Q ss_pred hhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 106 ~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
. . .++||+|+|+.. .+. ...+..+.++|||||.|++-.+.
T Consensus 108 ~--------~-~~~fDlV~~~~~------~~~---------~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 108 G--------Q-EEKFDVVTSRAV------ASL---------SDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred C--------C-CCCccEEEEccc------cCH---------HHHHHHHHHhcCCCeEEEEEeCC
Confidence 2 2 468999999741 111 34577889999999999986544
No 34
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.09 E-value=1e-09 Score=98.63 Aligned_cols=122 Identities=23% Similarity=0.276 Sum_probs=87.8
Q ss_pred CchhhhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------C-CC
Q 021161 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-IE 93 (316)
Q Consensus 21 ~raRsa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~-i~ 93 (316)
+..+.+..|+++.......+ ..+|||||||+|.++..+++... ..+|+++|+++.. . .+
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~-~~~vLDlG~G~G~~~~~l~~~~~-------------~~~~~~~D~~~~~~~~~~~~~~~ 80 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFI-PASVLDIGCGTGYLTRALLKRFP-------------QAEFIALDISAGMLAQAKTKLSE 80 (240)
T ss_pred HHHHHHHHHHHHhhhhccCC-CCeEEEECCCccHHHHHHHHhCC-------------CCcEEEEeChHHHHHHHHHhcCC
Confidence 44566677777766554333 47999999999999999988763 4679999998742 1 24
Q ss_pred CcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCH
Q 021161 94 GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT 173 (316)
Q Consensus 94 gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~ 173 (316)
++.++.+|+.+.. +..++||+|+|+...... .+ ....+..+.++|+|||.|++..+.....
T Consensus 81 ~~~~~~~d~~~~~--------~~~~~fD~vi~~~~l~~~----~~-------~~~~l~~~~~~L~~~G~l~~~~~~~~~~ 141 (240)
T TIGR02072 81 NVQFICGDAEKLP--------LEDSSFDLIVSNLALQWC----DD-------LSQALSELARVLKPGGLLAFSTFGPGTL 141 (240)
T ss_pred CCeEEecchhhCC--------CCCCceeEEEEhhhhhhc----cC-------HHHHHHHHHHHcCCCcEEEEEeCCccCH
Confidence 6888999998643 345789999998643211 12 1356788899999999999988765544
Q ss_pred HH
Q 021161 174 SL 175 (316)
Q Consensus 174 ~~ 175 (316)
..
T Consensus 142 ~~ 143 (240)
T TIGR02072 142 HE 143 (240)
T ss_pred HH
Confidence 43
No 35
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1e-09 Score=100.36 Aligned_cols=117 Identities=24% Similarity=0.323 Sum_probs=90.7
Q ss_pred HHhCCchhhhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------
Q 021161 17 KEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------ 90 (316)
Q Consensus 17 k~~g~raRsa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------ 90 (316)
.+..|.+|.++||..++++|.+.-++..+||+|+.||||++++.++. ..+|+|||....+
T Consensus 55 ~~~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--------------Ak~VyavDVG~~Ql~~kLR 120 (245)
T COG1189 55 EEQPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--------------AKHVYAVDVGYGQLHWKLR 120 (245)
T ss_pred cCcCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--------------CcEEEEEEccCCccCHhHh
Confidence 46789999999999999999999999999999999999999999874 3699999999854
Q ss_pred CCCCcEEEe-cCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 91 PIEGVIQVQ-GDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 91 ~i~gV~~i~-gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
.-++|..+. -|+..... +.+.+ ..|+++||-++ ++. ..+|-.+..+|+++|-++.-+
T Consensus 121 ~d~rV~~~E~tN~r~l~~-----~~~~~-~~d~~v~DvSF-----------ISL---~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 121 NDPRVIVLERTNVRYLTP-----EDFTE-KPDLIVIDVSF-----------ISL---KLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred cCCcEEEEecCChhhCCH-----HHccc-CCCeEEEEeeh-----------hhH---HHHHHHHHHhcCCCceEEEEe
Confidence 245666554 45555432 23443 89999999754 222 334667788999999888743
No 36
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.07 E-value=2.5e-10 Score=107.39 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=75.0
Q ss_pred hHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCC-Cc
Q 021161 28 KLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GV 95 (316)
Q Consensus 28 KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~-gV 95 (316)
|+..+.++.+ +++|++|||||||.|+++.+++++.+ ++|+||++++.+ .++ .|
T Consensus 50 k~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~g--------------~~v~gitlS~~Q~~~a~~~~~~~gl~~~v 114 (273)
T PF02353_consen 50 KLDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERYG--------------CHVTGITLSEEQAEYARERIREAGLEDRV 114 (273)
T ss_dssp HHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH----------------EEEEEES-HHHHHHHHHHHHCSTSSSTE
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcC--------------cEEEEEECCHHHHHHHHHHHHhcCCCCce
Confidence 4444555555 47999999999999999999999874 799999999842 233 47
Q ss_pred EEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC
Q 021161 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (316)
Q Consensus 96 ~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~ 170 (316)
++..+|..+.. .+||.|+|-++....|..+.. ..+..+.++|+|||.|++..+..
T Consensus 115 ~v~~~D~~~~~-----------~~fD~IvSi~~~Ehvg~~~~~---------~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 115 EVRLQDYRDLP-----------GKFDRIVSIEMFEHVGRKNYP---------AFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp EEEES-GGG--------------S-SEEEEESEGGGTCGGGHH---------HHHHHHHHHSETTEEEEEEEEEE
T ss_pred EEEEeeccccC-----------CCCCEEEEEechhhcChhHHH---------HHHHHHHHhcCCCcEEEEEeccc
Confidence 88889987642 389999999887666554433 34778899999999999876653
No 37
>PLN02244 tocopherol O-methyltransferase
Probab=99.05 E-value=1.4e-09 Score=105.25 Aligned_cols=96 Identities=26% Similarity=0.299 Sum_probs=74.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CC-CCcEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i-~gV~~i~gDIt~~~t 107 (316)
+++.+|||+|||+|.++..++++.+ ++|+|||+++.+ .+ ++++++++|+.+..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--------------~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~- 181 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--------------ANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP- 181 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--------------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-
Confidence 5678999999999999999998753 699999999842 12 36889999998753
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEc
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 168 (316)
+..++||+|+|..+. .|-.|. ..++..+.++|||||.|++..+
T Consensus 182 -------~~~~~FD~V~s~~~~----~h~~d~-------~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 182 -------FEDGQFDLVWSMESG----EHMPDK-------RKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred -------CCCCCccEEEECCch----hccCCH-------HHHHHHHHHHcCCCcEEEEEEe
Confidence 456789999997532 232231 3567888999999999998655
No 38
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.05 E-value=1.3e-09 Score=100.35 Aligned_cols=107 Identities=19% Similarity=0.178 Sum_probs=79.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCCCcEEEecCccChhhHHHHHhh
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
++.+|||+|||+|.++..++++ ..+|+++|+++.+ ....+.++++|+.+.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---------------~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~-------- 98 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---------------GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLP-------- 98 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---------------CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCc--------
Confidence 5679999999999999988753 2689999999842 1234567889987643
Q ss_pred cCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHH
Q 021161 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181 (316)
Q Consensus 115 ~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~ 181 (316)
+..++||+|+|+.+.. +..| ...++..+.++|+|||.|++..|......++...+.
T Consensus 99 ~~~~~fD~V~s~~~l~----~~~d-------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~ 154 (251)
T PRK10258 99 LATATFDLAWSNLAVQ----WCGN-------LSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQ 154 (251)
T ss_pred CCCCcEEEEEECchhh----hcCC-------HHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHH
Confidence 4457899999986432 1112 135678889999999999998887766666655554
No 39
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=99.05 E-value=1.1e-09 Score=106.84 Aligned_cols=131 Identities=22% Similarity=0.280 Sum_probs=96.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
++|.||||+||||||.+.+++..|. ..+.|+|.|.+.-. ...|......|....+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMk------------n~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~- 306 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMK------------NTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPE- 306 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHc------------CCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccc-
Confidence 5789999999999999999999996 46899999988742 13444556667664320
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHH-----------HHHHHHHHHHHHHHHcccCCcEEEEEEcc---CCCHH
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEF-----------VQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~-----------~~~~L~~aaL~~a~~vLkpGG~fV~Kif~---~~~~~ 174 (316)
..|.+ +||-|+.|+++..||+-..+.. ....|+...|..|..++++||.+|..+.. .++..
T Consensus 307 ----~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~ 381 (460)
T KOG1122|consen 307 ----KEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEA 381 (460)
T ss_pred ----cccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHH
Confidence 12555 8999999998888777554431 12446677788889999999999977665 45777
Q ss_pred HHHHHHHhcCCceEE
Q 021161 175 LLYCQLKLFFPVVTF 189 (316)
Q Consensus 175 ~l~~~l~~~F~~V~~ 189 (316)
.+-+.|+++ ..+++
T Consensus 382 vV~yaL~K~-p~~kL 395 (460)
T KOG1122|consen 382 VVDYALKKR-PEVKL 395 (460)
T ss_pred HHHHHHHhC-CceEe
Confidence 788888875 33444
No 40
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.05 E-value=6.9e-09 Score=96.28 Aligned_cols=141 Identities=21% Similarity=0.181 Sum_probs=94.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
.++.+|||+|||+|.++..+++.++ ..+|+++|+++.+ ...++.++++|+.+.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~-------------~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~--- 170 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERP-------------DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP--- 170 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc---
Confidence 3567999999999999999998763 4799999999842 124688999998653
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCC-CCccHH--------------HHHHHHHHHHHHHHHcccCCcEEEEEEccCCCH
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGL-HDMDEF--------------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT 173 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~-~~~de~--------------~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~ 173 (316)
+..++||+|+||.+.-..+. +..+.. .........+..+.++|+|||.+++.+ .....
T Consensus 171 ------~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~~~~ 243 (275)
T PRK09328 171 ------LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-GYDQG 243 (275)
T ss_pred ------CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-CchHH
Confidence 22368999999964211111 001100 012345667888899999999999855 22233
Q ss_pred HHHHHHHHh-cCCceEEecCCCCCCCCcceEEEEe
Q 021161 174 SLLYCQLKL-FFPVVTFAKPKSSRNSSIEAFAVCE 207 (316)
Q Consensus 174 ~~l~~~l~~-~F~~V~~~KP~sSR~~S~E~fvVc~ 207 (316)
..+...+.. .|..|.+.+..+.+ +++++++
T Consensus 244 ~~~~~~l~~~gf~~v~~~~d~~~~----~r~~~~~ 274 (275)
T PRK09328 244 EAVRALLAAAGFADVETRKDLAGR----DRVVLGR 274 (275)
T ss_pred HHHHHHHHhCCCceeEEecCCCCC----ceEEEEE
Confidence 445555543 48888888766544 5777653
No 41
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.04 E-value=1.7e-09 Score=87.45 Aligned_cols=94 Identities=21% Similarity=0.229 Sum_probs=70.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
.++.+|||+|||+|.++..++++.+ ..+|+++|+++.+ ..++++++.+|+.....
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~- 83 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVP-------------NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE- 83 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC-------------CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh-
Confidence 4567999999999999999998863 3799999998742 24568888888764210
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
....+||+|++++.+. . ....+..+.++|+|||.|++-.
T Consensus 84 ------~~~~~~D~v~~~~~~~--------~------~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 84 ------DSLPEPDRVFIGGSGG--------L------LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ------hhcCCCCEEEECCcch--------h------HHHHHHHHHHHcCCCCEEEEEe
Confidence 1125899999976321 1 1356889999999999999854
No 42
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.04 E-value=3.5e-09 Score=96.60 Aligned_cols=133 Identities=23% Similarity=0.252 Sum_probs=89.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~~ 109 (316)
.+.+|||+|||+|.++..+++..+ ...|+++|+++.+ .+.++.++++|+.+.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-------------~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---- 149 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-------------DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP---- 149 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc----
Confidence 456999999999999999998763 4699999999832 234688899998752
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCC-CCccHHH--------------HHHHHHHHHHHHHHcccCCcEEEEEEccCCCHH
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGL-HDMDEFV--------------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 174 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~-~~~de~~--------------~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~ 174 (316)
+..++||+|+||.+....+. +...... ........+..+.++|+|||.+++.+ .-....
T Consensus 150 -----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~~~~~~ 223 (251)
T TIGR03534 150 -----LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-GYDQGE 223 (251)
T ss_pred -----CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-CccHHH
Confidence 33468999999964322211 1111100 01223466788999999999999854 223344
Q ss_pred HHHHHHHh-cCCceEEecCCCCC
Q 021161 175 LLYCQLKL-FFPVVTFAKPKSSR 196 (316)
Q Consensus 175 ~l~~~l~~-~F~~V~~~KP~sSR 196 (316)
.+...++. -|+.|.+.+...++
T Consensus 224 ~~~~~l~~~gf~~v~~~~d~~~~ 246 (251)
T TIGR03534 224 AVRALFEAAGFADVETRKDLAGK 246 (251)
T ss_pred HHHHHHHhCCCCceEEEeCCCCC
Confidence 55555554 48888888766544
No 43
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.03 E-value=2.5e-09 Score=104.88 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=89.6
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC--------------CCCcEEEecCccChhh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------------IEGVIQVQGDITNART 107 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~--------------i~gV~~i~gDIt~~~t 107 (316)
+.+|||||||+|.++..++++.+ ..+|+++|+++++- ..+++++.+|+.+.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P-------------~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-- 293 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP-------------QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-- 293 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--
Confidence 35999999999999999998763 57999999998631 12467778887542
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhcCCce
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVV 187 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~F~~V 187 (316)
+.+.+||+|+||.+.. .|.. ... .+....+..+.++|+|||.|.+-.-+.-. ....|+..|..+
T Consensus 294 -------~~~~~fDlIlsNPPfh-~~~~-~~~----~ia~~l~~~a~~~LkpGG~L~iV~nr~l~---y~~~L~~~fg~~ 357 (378)
T PRK15001 294 -------VEPFRFNAVLCNPPFH-QQHA-LTD----NVAWEMFHHARRCLKINGELYIVANRHLD---YFHKLKKIFGNC 357 (378)
T ss_pred -------CCCCCEEEEEECcCcc-cCcc-CCH----HHHHHHHHHHHHhcccCCEEEEEEecCcC---HHHHHHHHcCCc
Confidence 3346899999996543 2321 221 23345678889999999999986544332 335566678777
Q ss_pred EEecCCCCCCCCcceEEEEeccc
Q 021161 188 TFAKPKSSRNSSIEAFAVCENYF 210 (316)
Q Consensus 188 ~~~KP~sSR~~S~E~fvVc~gf~ 210 (316)
... .+.-.|+|-+..|
T Consensus 358 ~~v-------a~~~kf~vl~a~k 373 (378)
T PRK15001 358 TTI-------ATNNKFVVLKAVK 373 (378)
T ss_pred eEE-------ccCCCEEEEEEEe
Confidence 654 2233577766554
No 44
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.03 E-value=1.4e-09 Score=101.24 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=74.2
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t 107 (316)
++++.+|||+|||+|.++..+++..+ ..++|+++|+++.+ .+.+++++++|+.+..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g------------~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~- 141 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVG------------PTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP- 141 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC------------CCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-
Confidence 36789999999999999988887764 34689999998731 2457888999987643
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
+..++||+|+++.... +..+. ..++..+.++|||||.|++.-
T Consensus 142 -------~~~~~fD~Vi~~~v~~----~~~d~-------~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 142 -------VADNSVDVIISNCVIN----LSPDK-------ERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred -------CCCCceeEEEEcCccc----CCCCH-------HHHHHHHHHHcCCCcEEEEEE
Confidence 3456899999986432 21221 356888999999999999853
No 45
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.02 E-value=2.3e-09 Score=98.93 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=93.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CC-C--CcEEEecCccChh
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-E--GVIQVQGDITNAR 106 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i-~--gV~~i~gDIt~~~ 106 (316)
+++++||+|+|+|-.+..+.+..... ......+|+.+|++|.+ ++ + .+.++.||..+++
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~-------~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQ-------FGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccc-------cCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC
Confidence 47999999999999999999887531 11234799999999832 22 2 3889999999875
Q ss_pred hHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhcCCc
Q 021161 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPV 186 (316)
Q Consensus 107 t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~F~~ 186 (316)
|+..++|..+.- .|+++.-+ ...+|++|.++|||||.|.|-.|...+...+.++...++.+
T Consensus 173 --------Fdd~s~D~yTia-----fGIRN~th------~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~ 233 (296)
T KOG1540|consen 173 --------FDDDSFDAYTIA-----FGIRNVTH------IQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFD 233 (296)
T ss_pred --------CCCCcceeEEEe-----cceecCCC------HHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhh
Confidence 788999999974 35565544 25789999999999999999899876666666766666666
Q ss_pred e
Q 021161 187 V 187 (316)
Q Consensus 187 V 187 (316)
|
T Consensus 234 V 234 (296)
T KOG1540|consen 234 V 234 (296)
T ss_pred h
Confidence 6
No 46
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.02 E-value=1.7e-09 Score=100.88 Aligned_cols=128 Identities=14% Similarity=0.084 Sum_probs=86.4
Q ss_pred cHHHHHHHHhCCchhhhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC
Q 021161 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (316)
Q Consensus 10 d~yyr~ak~~g~raRsa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~ 89 (316)
+.|-+.-.+.-++..+.--..++.+..+ ++++.+|||+|||+|.++..+++.. .++|+++|+++.
T Consensus 22 ~~~e~~~g~~~~~~gg~~~~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~--------------~~~v~giD~s~~ 86 (263)
T PTZ00098 22 KAYEFIFGEDYISSGGIEATTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY--------------GAHVHGVDICEK 86 (263)
T ss_pred hhHHHHhCCCCCCCCchHHHHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc--------------CCEEEEEECCHH
Confidence 4555555555555543333444444443 3678899999999999999888654 369999999973
Q ss_pred C---------CCCCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCC
Q 021161 90 A---------PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG 160 (316)
Q Consensus 90 ~---------~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpG 160 (316)
+ ...++.+..+|+++.+ +..++||+|++..+. .|...+ -...++..+.++||||
T Consensus 87 ~~~~a~~~~~~~~~i~~~~~D~~~~~--------~~~~~FD~V~s~~~l----~h~~~~-----d~~~~l~~i~r~LkPG 149 (263)
T PTZ00098 87 MVNIAKLRNSDKNKIEFEANDILKKD--------FPENTFDMIYSRDAI----LHLSYA-----DKKKLFEKCYKWLKPN 149 (263)
T ss_pred HHHHHHHHcCcCCceEEEECCcccCC--------CCCCCeEEEEEhhhH----HhCCHH-----HHHHHHHHHHHHcCCC
Confidence 2 1246888999998643 455789999985321 121110 1245688899999999
Q ss_pred cEEEEEEcc
Q 021161 161 GKFIAKIFR 169 (316)
Q Consensus 161 G~fV~Kif~ 169 (316)
|.|++..+.
T Consensus 150 G~lvi~d~~ 158 (263)
T PTZ00098 150 GILLITDYC 158 (263)
T ss_pred cEEEEEEec
Confidence 999987653
No 47
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.02 E-value=1.4e-09 Score=100.38 Aligned_cols=96 Identities=23% Similarity=0.291 Sum_probs=73.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCCCcEEEecCccChhhHHHHHh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~gV~~i~gDIt~~~t~~~I~~ 113 (316)
.++.+|||+|||+|.++..++++.+ ..+|+|||+++.+ .++++.++.+|+.+.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~-------------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~-------- 88 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWP-------------AARITGIDSSPAMLAEARSRLPDCQFVEADIASW-------- 88 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHhCCCCeEEECchhcc--------
Confidence 5678999999999999999998763 4799999999831 356788999998753
Q ss_pred hcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEc
Q 021161 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (316)
Q Consensus 114 ~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 168 (316)
....+||+|+|+.+.. |..|. ..++..+.++|||||.|++.+.
T Consensus 89 -~~~~~fD~v~~~~~l~----~~~d~-------~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 89 -QPPQALDLIFANASLQ----WLPDH-------LELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred -CCCCCccEEEEccChh----hCCCH-------HHHHHHHHHhcCCCcEEEEECC
Confidence 1235899999986542 11221 3567888999999999999653
No 48
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.02 E-value=7e-10 Score=89.58 Aligned_cols=103 Identities=21% Similarity=0.265 Sum_probs=71.8
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CC-CCcEEEecCccChhhHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAE 109 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i-~gV~~i~gDIt~~~t~~ 109 (316)
|.+|||+|||+|.++..++++. ..+++++|+++.+ .. ..++++++|+++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--------------~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--- 63 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--------------AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--- 63 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--------------TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH---
T ss_pred CCEEEEcCcchHHHHHHHHHHC--------------CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch---
Confidence 5699999999999999999875 2699999999942 12 45899999987642
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
+.+..++||+|++|...-.. . .+.....++....+..+.++|||||.+++-+
T Consensus 64 ---~~~~~~~~D~Iv~npP~~~~--~-~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 64 ---EPLPDGKFDLIVTNPPYGPR--S-GDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp ---HTCTTT-EEEEEE--STTSB--T-T----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---hhccCceeEEEEECCCCccc--c-ccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 34667899999999743211 1 1111111244567889999999999999843
No 49
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.01 E-value=1.6e-09 Score=102.47 Aligned_cols=126 Identities=24% Similarity=0.261 Sum_probs=92.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
.++.+|||+||||||.+.++++.+. ..+.|+|+|+.+.. ...++..+..|.+....
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~------------~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~- 150 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMG------------NKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDP- 150 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTT------------TTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHH-
T ss_pred cccccccccccCCCCceeeeeeccc------------chhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccc-
Confidence 5789999999999999999999985 46899999999842 24567777777776432
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCcc-----------HHHHHHHHHHHHHHHHHcc----cCCcEEEEEEcc---C
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMD-----------EFVQSQLILAGLTVVTHVL----KEGGKFIAKIFR---G 170 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~d-----------e~~~~~L~~aaL~~a~~vL----kpGG~fV~Kif~---~ 170 (316)
......||.|+.|..+..+|....+ ......++...|..+.+.| ||||++|..+.. -
T Consensus 151 -----~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e 225 (283)
T PF01189_consen 151 -----KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE 225 (283)
T ss_dssp -----HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG
T ss_pred -----cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH
Confidence 1223469999999876666543221 1223556778899999999 999999987754 4
Q ss_pred CCHHHHHHHHHhc
Q 021161 171 KDTSLLYCQLKLF 183 (316)
Q Consensus 171 ~~~~~l~~~l~~~ 183 (316)
++...+...++.+
T Consensus 226 ENE~vV~~fl~~~ 238 (283)
T PF01189_consen 226 ENEEVVEKFLKRH 238 (283)
T ss_dssp GTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC
Confidence 5666677777764
No 50
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.00 E-value=6.6e-09 Score=91.64 Aligned_cols=113 Identities=18% Similarity=0.187 Sum_probs=80.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
.++.+|||+|||+|.++..++++.+ +.+|+++|+++.+ .+.+++++++|+..
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~-------------~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~---- 92 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFP-------------SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI---- 92 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh----
Confidence 4678999999999999999998753 4799999999832 13568888888642
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHh-cCCce
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL-FFPVV 187 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~-~F~~V 187 (316)
.+. .+||+|++++.. +.. ...+..+.++|+|||.|++-.....+...+...+.. .|+.+
T Consensus 93 -----~~~-~~~D~v~~~~~~-----~~~---------~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 93 -----ELP-GKADAIFIGGSG-----GNL---------TAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSEL 152 (187)
T ss_pred -----hcC-cCCCEEEECCCc-----cCH---------HHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcc
Confidence 122 579999997632 111 234667889999999999865555566666666654 35544
Q ss_pred EE
Q 021161 188 TF 189 (316)
Q Consensus 188 ~~ 189 (316)
.+
T Consensus 153 ~~ 154 (187)
T PRK08287 153 DC 154 (187)
T ss_pred eE
Confidence 43
No 51
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.98 E-value=6.5e-09 Score=92.71 Aligned_cols=121 Identities=13% Similarity=0.191 Sum_probs=83.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------C-CCCcEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~-i~gV~~i~gDIt~~~t 107 (316)
.++.+|||+|||+|.++..+++.++ +..+|+++|+++.+ . ..++.++.+|+.+.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~------------~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~-- 104 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVG------------ETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI-- 104 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh--
Confidence 5778999999999999999988764 34799999999732 1 24678888887642
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhc-CCc
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPV 186 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~-F~~ 186 (316)
.... ...||+|++++. ..+ +...+..+.++|+|||.+++-..+-.....+...++.. | .
T Consensus 105 ----l~~~-~~~~D~V~~~~~-----~~~---------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~ 164 (198)
T PRK00377 105 ----LFTI-NEKFDRIFIGGG-----SEK---------LKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-N 164 (198)
T ss_pred ----Hhhc-CCCCCEEEECCC-----ccc---------HHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-C
Confidence 1122 257999999652 111 23567788899999999998555445556666667543 4 4
Q ss_pred eEEecCCC
Q 021161 187 VTFAKPKS 194 (316)
Q Consensus 187 V~~~KP~s 194 (316)
+.+..-..
T Consensus 165 ~~~~~~~~ 172 (198)
T PRK00377 165 LEITEVII 172 (198)
T ss_pred eEEEEEeh
Confidence 44443333
No 52
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.98 E-value=1.1e-09 Score=84.05 Aligned_cols=87 Identities=24% Similarity=0.384 Sum_probs=65.7
Q ss_pred EEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CCCCcEEEecCccChhhHHHHHhhcCC
Q 021161 46 VDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVIRHFDG 117 (316)
Q Consensus 46 LDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i~gV~~i~gDIt~~~t~~~I~~~~~~ 117 (316)
||+|||+|..+..++++ + ...|+++|+++.+ .-.++.+.++|+++.+ +..
T Consensus 1 LdiG~G~G~~~~~l~~~-~-------------~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--------~~~ 58 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-------------GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLP--------FPD 58 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-------------TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSS--------S-T
T ss_pred CEecCcCCHHHHHHHhc-c-------------CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCc--------ccc
Confidence 79999999999999987 2 3799999999842 2356779999999874 567
Q ss_pred ccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 118 ~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
++||+|+|...... .++ ...++..+.++|||||.|++
T Consensus 59 ~sfD~v~~~~~~~~-----~~~------~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 59 NSFDVVFSNSVLHH-----LED------PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp T-EEEEEEESHGGG-----SSH------HHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccceee-----ccC------HHHHHHHHHHHcCcCeEEeC
Confidence 89999999865422 121 25678999999999999985
No 53
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.98 E-value=6.6e-09 Score=96.52 Aligned_cols=121 Identities=19% Similarity=0.202 Sum_probs=82.0
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CCCCcEEEecCccChhhHHHHHh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i~gV~~i~gDIt~~~t~~~I~~ 113 (316)
..+|||||||+|.++..++++.+ ..+|+|+|+++.+ ...+++++++|+.+.- ..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-------------~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l-----~~ 148 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-------------GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDAL-----PT 148 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhc-----ch
Confidence 45899999999999999998763 3689999999853 1235788999987531 11
Q ss_pred hcCCccccEEEeCCCCCCCCC-CCccHH---------H-----HHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHH
Q 021161 114 HFDGCKADLVVCDGAPDVTGL-HDMDEF---------V-----QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 178 (316)
Q Consensus 114 ~~~~~~~DlVvsDgapdvtG~-~~~de~---------~-----~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~ 178 (316)
.+ .++||+|++|.+.-.++. ...+.. + -.+.+...+..+.++|+|||.|++-+ .......+..
T Consensus 149 ~~-~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~-~~~~~~~v~~ 226 (251)
T TIGR03704 149 AL-RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET-SERQAPLAVE 226 (251)
T ss_pred hc-CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE-CcchHHHHHH
Confidence 12 247999999975332221 111110 0 12345677888899999999999854 4445566777
Q ss_pred HHHh
Q 021161 179 QLKL 182 (316)
Q Consensus 179 ~l~~ 182 (316)
.++.
T Consensus 227 ~l~~ 230 (251)
T TIGR03704 227 AFAR 230 (251)
T ss_pred HHHH
Confidence 6765
No 54
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.97 E-value=1.3e-08 Score=89.20 Aligned_cols=118 Identities=19% Similarity=0.161 Sum_probs=80.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC----------CCCcEEEecCccChhhHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~----------i~gV~~i~gDIt~~~t~~~ 110 (316)
++.+|||||||+|.++..++++. .+|+++|+++.+- -..+.++.+|+.+.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~---------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----- 78 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG---------------KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG----- 78 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC---------------CEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc-----
Confidence 45789999999999999998753 3899999998420 12467788998653
Q ss_pred HHhhcCCccccEEEeCCCCC-CCCCCCccHHH---------HHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHH
Q 021161 111 VIRHFDGCKADLVVCDGAPD-VTGLHDMDEFV---------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapd-vtG~~~~de~~---------~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l 180 (316)
+ ..+||+|+++.... ..+....+++. ...++...+..+.++|+|||+|++-.....+...+...|
T Consensus 79 ----~-~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l 153 (179)
T TIGR00537 79 ----V-RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKL 153 (179)
T ss_pred ----c-CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHH
Confidence 2 24899999996421 11111111111 123456778899999999999998665544567777777
Q ss_pred Hhc
Q 021161 181 KLF 183 (316)
Q Consensus 181 ~~~ 183 (316)
+..
T Consensus 154 ~~~ 156 (179)
T TIGR00537 154 DER 156 (179)
T ss_pred HhC
Confidence 654
No 55
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.97 E-value=2.5e-09 Score=96.01 Aligned_cols=119 Identities=11% Similarity=0.056 Sum_probs=78.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCc-cChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDI-TNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDI-t~~~t 107 (316)
+++.+|||+|||+|.++..+++..+ ..+|+|||+++-+ .++++.++++|+ ...
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p-------------~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l-- 103 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANP-------------DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVL-- 103 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCC-------------CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHH--
Confidence 3578999999999999999988763 4689999999831 246789999998 332
Q ss_pred HHHHHhhcCCccccEEEeCCCCCC-CCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHH
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDV-TGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdv-tG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~ 181 (316)
...+..++||+|+++..... ...+.... ......+..+.++|||||.|++.+........+...++
T Consensus 104 ----~~~~~~~~~D~V~~~~~~p~~~~~~~~~~----~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 170 (202)
T PRK00121 104 ----LDMFPDGSLDRIYLNFPDPWPKKRHHKRR----LVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLS 170 (202)
T ss_pred ----HHHcCccccceEEEECCCCCCCccccccc----cCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 12355678999999753211 10111110 01245678889999999999985532222334444443
No 56
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.97 E-value=1.6e-08 Score=100.04 Aligned_cols=145 Identities=16% Similarity=0.077 Sum_probs=96.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC---------C-CCcEEEecCccChhhHH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------I-EGVIQVQGDITNARTAE 109 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~---------i-~gV~~i~gDIt~~~t~~ 109 (316)
.++.+|||||||+|..+..++++.+ ..+|+|+|+++.+- . .+++++++|+.+...
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p-------------~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l-- 314 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERP-------------DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDM-- 314 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccc--
Confidence 4567999999999999998887653 57999999998430 1 258899999876321
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCc-cH------HH-------HHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHH
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDM-DE------FV-------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSL 175 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~-de------~~-------~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~ 175 (316)
....+||+|+||.+.-.++.... ++ .. ........+..+.+.|+|||.+++.+ .-.....
T Consensus 315 -----~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G~~Q~e~ 388 (423)
T PRK14966 315 -----PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-GFDQGAA 388 (423)
T ss_pred -----ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-CccHHHH
Confidence 11347999999973211111111 00 00 11234567788889999999998755 2233445
Q ss_pred HHHHHHh-cCCceEEecCCCCCCCCcceEEEEecc
Q 021161 176 LYCQLKL-FFPVVTFAKPKSSRNSSIEAFAVCENY 209 (316)
Q Consensus 176 l~~~l~~-~F~~V~~~KP~sSR~~S~E~fvVc~gf 209 (316)
+...++. -|..+.+.|-.+.+ +++++++..
T Consensus 389 V~~ll~~~Gf~~v~v~kDl~G~----dR~v~~~~~ 419 (423)
T PRK14966 389 VRGVLAENGFSGVETLPDLAGL----DRVTLGKYM 419 (423)
T ss_pred HHHHHHHCCCcEEEEEEcCCCC----cEEEEEEEh
Confidence 5566654 38888888877655 788887643
No 57
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.96 E-value=1.6e-08 Score=95.30 Aligned_cols=138 Identities=18% Similarity=0.244 Sum_probs=92.2
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCC-CcEEEecCccChhhHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTAEV 110 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~-gV~~i~gDIt~~~t~~~ 110 (316)
.+|||||||+|.++..+++..+ ..+|+|+|+++.+ .+. .+.++++|+.+.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-------------~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----- 177 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-------------NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----- 177 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-----
Confidence 6999999999999999998763 4799999999842 133 388999998752
Q ss_pred HHhhcCCccccEEEeCCCCCCCC-CCCc------cHHH-------HHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHH
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTG-LHDM------DEFV-------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG-~~~~------de~~-------~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l 176 (316)
+...+||+|+||.+.-.+. .... +... ........+..+.++|+|||.|++.+-. .....+
T Consensus 178 ----~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~-~q~~~~ 252 (284)
T TIGR00536 178 ----LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN-WQQKSL 252 (284)
T ss_pred ----CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc-cHHHHH
Confidence 3334799999996321111 0000 0000 1234567788899999999999987632 223344
Q ss_pred HHHHH--hcCCceEEecCCCCCCCCcceEEEEe
Q 021161 177 YCQLK--LFFPVVTFAKPKSSRNSSIEAFAVCE 207 (316)
Q Consensus 177 ~~~l~--~~F~~V~~~KP~sSR~~S~E~fvVc~ 207 (316)
...+. ..|..+.+.|-.+.+ +++++++
T Consensus 253 ~~~~~~~~~~~~~~~~~D~~g~----~R~~~~~ 281 (284)
T TIGR00536 253 KELLRIKFTWYDVENGRDLNGK----ERVVLGF 281 (284)
T ss_pred HHHHHhcCCCceeEEecCCCCC----ceEEEEE
Confidence 44444 247888888775544 6777764
No 58
>PRK14967 putative methyltransferase; Provisional
Probab=98.94 E-value=2.1e-08 Score=91.10 Aligned_cols=133 Identities=16% Similarity=0.090 Sum_probs=83.6
Q ss_pred hhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC--------CC--Cc
Q 021161 26 AFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE--GV 95 (316)
Q Consensus 26 a~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~--------i~--gV 95 (316)
...|.+...... +.++.+|||+|||+|.++..+++. + ..+|+++|+++.+- .. ++
T Consensus 22 s~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~-~-------------~~~v~~vD~s~~~l~~a~~n~~~~~~~~ 86 (223)
T PRK14967 22 TQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAA-G-------------AGSVTAVDISRRAVRSARLNALLAGVDV 86 (223)
T ss_pred HHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHHHHHHhCCee
Confidence 344555555444 356789999999999999988864 2 24899999998421 11 36
Q ss_pred EEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCC-CC--CCccHH-------HHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVT-GL--HDMDEF-------VQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 96 ~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvt-G~--~~~de~-------~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
+++++|+.+. +..++||+|+||.+...+ .. ...... ....++...+..+.++||+||.|++
T Consensus 87 ~~~~~d~~~~---------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 87 DVRRGDWARA---------VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred EEEECchhhh---------ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 7788887652 234689999999632111 10 000000 0123446678889999999999997
Q ss_pred EEccCCCHHHHHHHHHh
Q 021161 166 KIFRGKDTSLLYCQLKL 182 (316)
Q Consensus 166 Kif~~~~~~~l~~~l~~ 182 (316)
-.-.-.+...+...++.
T Consensus 158 ~~~~~~~~~~~~~~l~~ 174 (223)
T PRK14967 158 VQSELSGVERTLTRLSE 174 (223)
T ss_pred EEecccCHHHHHHHHHH
Confidence 33222345555555543
No 59
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.93 E-value=1.4e-09 Score=98.11 Aligned_cols=117 Identities=24% Similarity=0.277 Sum_probs=90.6
Q ss_pred HHhCCchhhhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------
Q 021161 17 KEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------ 90 (316)
Q Consensus 17 k~~g~raRsa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------ 90 (316)
|-++-|+|-|..|+--. . +....+|+|||||||.-+..|++|.+ ...|+|+|-++.+
T Consensus 10 ~F~~eRtRPa~dLla~V---p-~~~~~~v~DLGCGpGnsTelL~~RwP-------------~A~i~GiDsS~~Mla~Aa~ 72 (257)
T COG4106 10 QFEDERTRPARDLLARV---P-LERPRRVVDLGCGPGNSTELLARRWP-------------DAVITGIDSSPAMLAKAAQ 72 (257)
T ss_pred HHHHhccCcHHHHHhhC---C-ccccceeeecCCCCCHHHHHHHHhCC-------------CCeEeeccCCHHHHHHHHH
Confidence 45667999999887421 1 24568999999999999999999984 6899999999832
Q ss_pred CCCCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC
Q 021161 91 PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (316)
Q Consensus 91 ~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~ 170 (316)
.+++++|.++|+.+.. +..++|++++|.+.. |-.|+. ..|......|.|||.+.+.+-..
T Consensus 73 rlp~~~f~~aDl~~w~---------p~~~~dllfaNAvlq----WlpdH~-------~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 73 RLPDATFEEADLRTWK---------PEQPTDLLFANAVLQ----WLPDHP-------ELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hCCCCceecccHhhcC---------CCCccchhhhhhhhh----hccccH-------HHHHHHHHhhCCCceEEEECCCc
Confidence 3789999999998753 457899999998653 233443 34556678999999999987543
No 60
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.93 E-value=2e-08 Score=97.23 Aligned_cols=158 Identities=20% Similarity=0.188 Sum_probs=101.6
Q ss_pred HHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CCCCcEEEecCccCh
Q 021161 34 EEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNA 105 (316)
Q Consensus 34 ~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i~gV~~i~gDIt~~ 105 (316)
+...+-.++.+|||||||+|.++..+++..+ ..+|+++|+++.+ ...+++++++|+.+.
T Consensus 106 ~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~-------------~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l 172 (340)
T PLN02490 106 EPADLSDRNLKVVDVGGGTGFTTLGIVKHVD-------------AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL 172 (340)
T ss_pred hhcccCCCCCEEEEEecCCcHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC
Confidence 3334445778999999999999999988763 3689999998732 245788899998764
Q ss_pred hhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc----------------
Q 021161 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR---------------- 169 (316)
Q Consensus 106 ~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~---------------- 169 (316)
. +..++||+|++..+... ..+. ..++..+.++|+|||.|++....
T Consensus 173 p--------~~~~sFDvVIs~~~L~~----~~d~-------~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~ 233 (340)
T PLN02490 173 P--------FPTDYADRYVSAGSIEY----WPDP-------QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWML 233 (340)
T ss_pred C--------CCCCceeEEEEcChhhh----CCCH-------HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhcc
Confidence 3 44578999999764321 1121 24688999999999999764211
Q ss_pred CCCHHHHHHHHHhc-CCceEEec--CCCCCCCCcceEEE---EecccCCCCCCCccchhh
Q 021161 170 GKDTSLLYCQLKLF-FPVVTFAK--PKSSRNSSIEAFAV---CENYFPPEGFNPKDLHRL 223 (316)
Q Consensus 170 ~~~~~~l~~~l~~~-F~~V~~~K--P~sSR~~S~E~fvV---c~gf~~p~~~~p~~~~~~ 223 (316)
.....++...++.. |+.|.+.. |..-|......+++ -++.|+..|+-|-..-|.
T Consensus 234 ~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~ 293 (340)
T PLN02490 234 FPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPK 293 (340)
T ss_pred CCCHHHHHHHHHHCCCeEEEEEEcChhhccccccccceeeEEEEEeccccCCCccccCcc
Confidence 11335555666654 88766643 33333333333322 256666677666444443
No 61
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.92 E-value=4.4e-09 Score=103.40 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=73.9
Q ss_pred hhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCC--CcEEEecCcc
Q 021161 32 IDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIE--GVIQVQGDIT 103 (316)
Q Consensus 32 Id~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~--gV~~i~gDIt 103 (316)
+.+..+ ++++.+|||+|||+|+++..++++.+ ++|+|+|+++.+ ... ++++..+|..
T Consensus 159 l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~g--------------~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~ 223 (383)
T PRK11705 159 ICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHYG--------------VSVVGVTISAEQQKLAQERCAGLPVEIRLQDYR 223 (383)
T ss_pred HHHHhC-CCCCCEEEEeCCCccHHHHHHHHHCC--------------CEEEEEeCCHHHHHHHHHHhccCeEEEEECchh
Confidence 334443 36789999999999999999987653 689999999842 122 3666677764
Q ss_pred ChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 104 ~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
+ + .++||+|+|.+.....|..+. ...+..+.++|||||.+++..+.
T Consensus 224 ~----------l-~~~fD~Ivs~~~~ehvg~~~~---------~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 224 D----------L-NGQFDRIVSVGMFEHVGPKNY---------RTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred h----------c-CCCCCEEEEeCchhhCChHHH---------HHHHHHHHHHcCCCcEEEEEEcc
Confidence 3 2 257999999876544333221 34577899999999999997654
No 62
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=7.3e-09 Score=99.93 Aligned_cols=137 Identities=21% Similarity=0.216 Sum_probs=89.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
+++.+|||+||||||.|..|.+.+... ...+.|+|-|.++.+ +.+++.+.+.|++..+..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~---------~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~ 224 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKD---------PTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNI 224 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcC---------CCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccc
Confidence 789999999999999999888877421 125799999999842 344555566666654432
Q ss_pred HHHHh--hcCCccccEEEeCCCCCCCCCC--Ccc---H-HHH------HHHHHHHHHHHHHcccCCcEEEEEEccCC---
Q 021161 109 EVVIR--HFDGCKADLVVCDGAPDVTGLH--DMD---E-FVQ------SQLILAGLTVVTHVLKEGGKFIAKIFRGK--- 171 (316)
Q Consensus 109 ~~I~~--~~~~~~~DlVvsDgapdvtG~~--~~d---e-~~~------~~L~~aaL~~a~~vLkpGG~fV~Kif~~~--- 171 (316)
. +.+ ......||-|+||..+...|.. +.+ + +.+ ..|+...|..++++||+||++|..+....
T Consensus 225 ~-~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpie 303 (375)
T KOG2198|consen 225 Y-LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIE 303 (375)
T ss_pred c-cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchh
Confidence 1 000 0123579999999865433322 211 1 111 23556778889999999999999887643
Q ss_pred CHHHHHHHHHhcCCc
Q 021161 172 DTSLLYCQLKLFFPV 186 (316)
Q Consensus 172 ~~~~l~~~l~~~F~~ 186 (316)
+..-+-..|+.....
T Consensus 304 NEaVV~~~L~~~~~~ 318 (375)
T KOG2198|consen 304 NEAVVQEALQKVGGA 318 (375)
T ss_pred hHHHHHHHHHHhcCc
Confidence 444555666665443
No 63
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.91 E-value=1e-08 Score=98.62 Aligned_cols=125 Identities=18% Similarity=0.147 Sum_probs=86.7
Q ss_pred CcHHHHHHHHhCCch--------------hhhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCC
Q 021161 9 RDIYYRKAKEEGWRA--------------RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSR 74 (316)
Q Consensus 9 rd~yyr~ak~~g~ra--------------Rsa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~ 74 (316)
..+|-.+..-..||. |+.+|...+...++.+ .+.+|||+|||+|.++..+++...
T Consensus 77 ~~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~---------- 145 (322)
T PRK15068 77 KRIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGA---------- 145 (322)
T ss_pred HHHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCC----------
Confidence 345555555666754 4555555555555544 468999999999999998887632
Q ss_pred CCCCCEEEEEeCCCCC------------CCCCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHH
Q 021161 75 EGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQ 142 (316)
Q Consensus 75 ~~~~~~IvaVDl~~~~------------~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~ 142 (316)
..|+|+|+++.. .-.+|.++.+|+.+.+ + .++||+|+|-+... |..+.
T Consensus 146 ----~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp--------~-~~~FD~V~s~~vl~----H~~dp--- 205 (322)
T PRK15068 146 ----KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP--------A-LKAFDTVFSMGVLY----HRRSP--- 205 (322)
T ss_pred ----CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC--------C-cCCcCEEEECChhh----ccCCH---
Confidence 469999998831 1236888999987643 2 46899999976432 22232
Q ss_pred HHHHHHHHHHHHHcccCCcEEEEEEc
Q 021161 143 SQLILAGLTVVTHVLKEGGKFIAKIF 168 (316)
Q Consensus 143 ~~L~~aaL~~a~~vLkpGG~fV~Kif 168 (316)
...|..+.++|+|||.|++..+
T Consensus 206 ----~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 206 ----LDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred ----HHHHHHHHHhcCCCcEEEEEEE
Confidence 3567889999999999998643
No 64
>PRK08317 hypothetical protein; Provisional
Probab=98.90 E-value=1.1e-08 Score=91.79 Aligned_cols=97 Identities=25% Similarity=0.270 Sum_probs=72.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----------CCCCcEEEecCccChhhHH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----------~i~gV~~i~gDIt~~~t~~ 109 (316)
.++.+|||+|||+|.|+..++++++ +.++|+++|+++.. ...++.+..+|+.+..
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~------------~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--- 82 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVG------------PEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP--- 82 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcC------------CCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC---
Confidence 5778999999999999999998873 34799999999741 1346888889987643
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
+...+||+|+++...... .+ ....+..+.++|+|||.+++..
T Consensus 83 -----~~~~~~D~v~~~~~~~~~----~~-------~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 83 -----FPDGSFDAVRSDRVLQHL----ED-------PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred -----CCCCCceEEEEechhhcc----CC-------HHHHHHHHHHHhcCCcEEEEEe
Confidence 345789999997543211 12 1345778899999999999754
No 65
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.90 E-value=5.7e-09 Score=96.57 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=74.5
Q ss_pred HHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------C-CCCcE
Q 021161 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVI 96 (316)
Q Consensus 29 L~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~-i~gV~ 96 (316)
+.++.+... .++.+|||+|||+|.++..++++. .+|+++|+++.+ . .++++
T Consensus 34 ~~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~g---------------~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~ 96 (255)
T PRK11036 34 LDRLLAELP--PRPLRVLDAGGGEGQTAIKLAELG---------------HQVILCDLSAEMIQRAKQAAEAKGVSDNMQ 96 (255)
T ss_pred HHHHHHhcC--CCCCEEEEeCCCchHHHHHHHHcC---------------CEEEEEECCHHHHHHHHHHHHhcCCccceE
Confidence 334444433 456899999999999999998752 589999999831 1 24678
Q ss_pred EEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 97 ~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
++++|+.+... +..++||+|+|...... -.+. ..++..+.++|||||.|++-.+.
T Consensus 97 ~~~~d~~~l~~-------~~~~~fD~V~~~~vl~~----~~~~-------~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 97 FIHCAAQDIAQ-------HLETPVDLILFHAVLEW----VADP-------KSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred EEEcCHHHHhh-------hcCCCCCEEEehhHHHh----hCCH-------HHHHHHHHHHcCCCeEEEEEEEC
Confidence 89999876421 23468999999754211 1111 35678889999999999985544
No 66
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.89 E-value=5.6e-09 Score=95.86 Aligned_cols=110 Identities=19% Similarity=0.111 Sum_probs=76.2
Q ss_pred CCchhhhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCC-CC-----CCC
Q 021161 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA-----PIE 93 (316)
Q Consensus 20 g~raRsa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~-~~-----~i~ 93 (316)
-|++|+++||.++.+.|++.-.+.+|||+|||||+||+.++++. ..+|+|||+++ |. ..+
T Consensus 54 ~~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g--------------a~~v~avD~~~~~l~~~l~~~~ 119 (228)
T TIGR00478 54 LFVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG--------------AKEVYGVDVGYNQLAEKLRQDE 119 (228)
T ss_pred chhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC--------------CCEEEEEeCCHHHHHHHHhcCC
Confidence 39999999999999999987788999999999999999999862 25899999999 32 234
Q ss_pred CcE-EEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 94 GVI-QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 94 gV~-~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
.|. ....||.... .. .+ ..|+++||.++- +..+ .+..+..+|++ |.+++-
T Consensus 120 ~v~~~~~~ni~~~~-~~----~~---~~d~~~~Dvsfi-----------S~~~---~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 120 RVKVLERTNIRYVT-PA----DI---FPDFATFDVSFI-----------SLIS---ILPELDLLLNP-NDLTLL 170 (228)
T ss_pred CeeEeecCCcccCC-Hh----Hc---CCCceeeeEEEe-----------ehHh---HHHHHHHHhCc-CeEEEE
Confidence 443 3344666432 11 11 136666664321 0111 35566778888 888774
No 67
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.89 E-value=1.2e-08 Score=95.41 Aligned_cols=97 Identities=18% Similarity=0.183 Sum_probs=72.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCCCcEEEecCccChhhHHHHHh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~gV~~i~gDIt~~~t~~~I~~ 113 (316)
.+..+|||+|||+|.++..+++.++. .....|+|+|+++.+ ..+++.++.+|+.+.+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~----------~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp------- 146 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPE----------ITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLP------- 146 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhccc----------ccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCC-------
Confidence 35578999999999999999987641 012489999999842 2467889999988753
Q ss_pred hcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCC
Q 021161 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (316)
Q Consensus 114 ~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~ 172 (316)
+..++||+|++..+|. .+....++|||||.|++-......
T Consensus 147 -~~~~sfD~I~~~~~~~------------------~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 147 -FADQSLDAIIRIYAPC------------------KAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred -CcCCceeEEEEecCCC------------------CHHHHHhhccCCCEEEEEeCCCcc
Confidence 4567899999865431 124567899999999986654433
No 68
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.89 E-value=7.3e-09 Score=93.56 Aligned_cols=92 Identities=22% Similarity=0.270 Sum_probs=69.0
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t 107 (316)
++++.+|||+|||+|.++..+++..+ ..++|++||+++.. .+.+++++.+|..+..
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~------------~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~- 141 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVG------------RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW- 141 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhC------------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC-
Confidence 36789999999999999999998864 34789999999731 2457899999987531
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
....+||+|+++++.. .. .....+.|+|||+|++-+
T Consensus 142 -------~~~~~fD~Ii~~~~~~-----~~------------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 -------EPLAPYDRIYVTAAGP-----KI------------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred -------cccCCCCEEEEcCCcc-----cc------------cHHHHHhcCcCcEEEEEE
Confidence 1235899999987431 11 123567899999999844
No 69
>PRK14968 putative methyltransferase; Provisional
Probab=98.88 E-value=7.6e-08 Score=83.77 Aligned_cols=120 Identities=21% Similarity=0.271 Sum_probs=80.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCC--cEEEecCccChh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG--VIQVQGDITNAR 106 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~g--V~~i~gDIt~~~ 106 (316)
.++.+|||+|||+|.++..++++ + .+|+++|+++.+ ...+ +.++++|..+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~--------------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~- 85 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-G--------------KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP- 85 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-c--------------ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-
Confidence 57789999999999999999876 2 689999999832 1122 77888887652
Q ss_pred hHHHHHhhcCCccccEEEeCCCCCCCCC-CCccHHH---------HHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHH
Q 021161 107 TAEVVIRHFDGCKADLVVCDGAPDVTGL-HDMDEFV---------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (316)
Q Consensus 107 t~~~I~~~~~~~~~DlVvsDgapdvtG~-~~~de~~---------~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l 176 (316)
+...+||+|+++......+. ....... ....+...+..+.++|+|||.+++-+........+
T Consensus 86 --------~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l 157 (188)
T PRK14968 86 --------FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEV 157 (188)
T ss_pred --------ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHH
Confidence 23347999999864221110 0000000 02234567888999999999998866554455666
Q ss_pred HHHHHhc
Q 021161 177 YCQLKLF 183 (316)
Q Consensus 177 ~~~l~~~ 183 (316)
...+...
T Consensus 158 ~~~~~~~ 164 (188)
T PRK14968 158 LEYLEKL 164 (188)
T ss_pred HHHHHHC
Confidence 6666654
No 70
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.88 E-value=1.5e-08 Score=97.41 Aligned_cols=112 Identities=19% Similarity=0.124 Sum_probs=78.7
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t 107 (316)
.+++.+|||+|||+|+++..++.. +.+|+|+|+++.+ .++++.++++|+++.+
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~---------------~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~- 243 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM---------------GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP- 243 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh---------------CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-
Confidence 367889999999999998776542 2689999999832 2455788899998754
Q ss_pred HHHHHhhcCCccccEEEeCCCCCC-CCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHH
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDV-TGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdv-tG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l 176 (316)
+..++||+|++|.+... ++... .....+...++..+.++|+|||++++-+-...+...+
T Consensus 244 -------~~~~~~D~Iv~dPPyg~~~~~~~---~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~ 303 (329)
T TIGR01177 244 -------LSSESVDAIATDPPYGRSTTAAG---DGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESL 303 (329)
T ss_pred -------cccCCCCEEEECCCCcCcccccC---CchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHH
Confidence 22468999999964321 11111 1123456778899999999999999866544444433
No 71
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.87 E-value=1.4e-08 Score=95.91 Aligned_cols=112 Identities=20% Similarity=0.170 Sum_probs=77.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-----------CC-CcEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IE-GVIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-----------i~-gV~~i~gDIt~~~t 107 (316)
.++.+|||+|||+|.++..+++. + ..+|+|+|+++.+- +. .+.+..+|...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g-------------~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--- 220 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-G-------------AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--- 220 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc---
Confidence 47799999999999999887753 2 25899999998531 11 23444454221
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhcCCce
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVV 187 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~F~~V 187 (316)
...++||+|+|+... +.+...+..+.++|||||.|++.-+...+...+...++..|+-+
T Consensus 221 -------~~~~~fDlVvan~~~--------------~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~ 279 (288)
T TIGR00406 221 -------PIEGKADVIVANILA--------------EVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVV 279 (288)
T ss_pred -------ccCCCceEEEEecCH--------------HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCcee
Confidence 123689999998521 11235567889999999999998766666677777777667655
Q ss_pred EE
Q 021161 188 TF 189 (316)
Q Consensus 188 ~~ 189 (316)
.+
T Consensus 280 ~~ 281 (288)
T TIGR00406 280 EI 281 (288)
T ss_pred eE
Confidence 44
No 72
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.86 E-value=1.2e-08 Score=90.80 Aligned_cols=122 Identities=12% Similarity=0.039 Sum_probs=81.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
....+|||||||+|.++..++++.+ +..|+|||+++.. .+.++.++++|+.+..
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p-------------~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~-- 79 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNP-------------DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELL-- 79 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCC-------------CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHH--
Confidence 3556999999999999999998763 5789999999831 2568999999997632
Q ss_pred HHHHhhcCCccccEEEeCCCCCC-CCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhc
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDV-TGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 183 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdv-tG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~ 183 (316)
...+..+.+|.|+++.+... ...|..... +....+..+.++|||||.|.+.+........+...+...
T Consensus 80 ---~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~----~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 80 ---DKFFPDGSLSKVFLNFPDPWPKKRHNKRRI----TQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEN 148 (194)
T ss_pred ---HhhCCCCceeEEEEECCCcCCCCCcccccc----CCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence 12244468999999863111 111111100 013567889999999999998764333344445555543
No 73
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.85 E-value=1.4e-08 Score=90.73 Aligned_cols=93 Identities=19% Similarity=0.212 Sum_probs=67.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~~ 109 (316)
++.+|||+|||+|.++..|+++. .+|+|+|+++.+ .+.++++..+|+.+..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g---------------~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~--- 91 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANG---------------FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT--- 91 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCC---------------CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC---
Confidence 45799999999999999998752 589999999832 2346777888887542
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
+. .+||+|+|.+.. |..+. ......+..+.++|+|||.+++.
T Consensus 92 -----~~-~~fD~I~~~~~~-----~~~~~----~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 92 -----FD-GEYDFILSTVVL-----MFLEA----KTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred -----cC-CCcCEEEEecch-----hhCCH----HHHHHHHHHHHHHcCCCcEEEEE
Confidence 33 579999997642 21221 12345678889999999997653
No 74
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.85 E-value=1.6e-08 Score=91.52 Aligned_cols=92 Identities=18% Similarity=0.245 Sum_probs=69.2
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t 107 (316)
++++.+|||+|||+|..+..+++.++ ..++|+++|+++.. .+.+|+++++|..+..
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~------------~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~- 140 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVG------------KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY- 140 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-
Confidence 36789999999999999999998874 35799999999831 2457899999987532
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
....+||+|+++++. +... ....+.|||||.|++-+
T Consensus 141 -------~~~~~fD~I~~~~~~-----~~~~------------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 141 -------EENAPYDRIYVTAAG-----PDIP------------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred -------CcCCCcCEEEECCCc-----ccch------------HHHHHhhCCCcEEEEEE
Confidence 234689999998642 1111 23456899999999843
No 75
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.85 E-value=3.7e-08 Score=87.53 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=77.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
+++.+|||+|||+|.++..+++.. +.++|+++|+++.+ .+.+++++.+|+.+.
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~-------------~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~--- 102 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLC-------------PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC--- 102 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHC-------------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH---
Confidence 577899999999999999998654 24799999999842 235688899998541
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhc-CCce
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVV 187 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~-F~~V 187 (316)
...+. ..+|.|+.++.- . ...++..+.++|+|||.|++..........+...++.+ ...+
T Consensus 103 ---~~~~~-~~~d~v~~~~~~------~---------~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~ 163 (196)
T PRK07402 103 ---LAQLA-PAPDRVCIEGGR------P---------IKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNI 163 (196)
T ss_pred ---HhhCC-CCCCEEEEECCc------C---------HHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCc
Confidence 11222 246788776421 1 13557788889999999999765433334444545443 3334
Q ss_pred EEec
Q 021161 188 TFAK 191 (316)
Q Consensus 188 ~~~K 191 (316)
.+.+
T Consensus 164 ~~~~ 167 (196)
T PRK07402 164 EVVQ 167 (196)
T ss_pred eEEE
Confidence 4443
No 76
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.85 E-value=1.7e-08 Score=101.27 Aligned_cols=97 Identities=20% Similarity=0.174 Sum_probs=74.0
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------CC-CCcEEEecCccChhhH
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PI-EGVIQVQGDITNARTA 108 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~i-~gV~~i~gDIt~~~t~ 108 (316)
++++.+|||+|||+|.++..++++.+ .+|+|+|+++.+ .. ..++++++|+.+..
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~--------------~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-- 327 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFD--------------VHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-- 327 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcC--------------CEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC--
Confidence 36788999999999999999987653 689999999632 11 35788999988753
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEc
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 168 (316)
+..++||+|+|.+... |..+. ..++..+.++|||||.|++..+
T Consensus 328 ------~~~~~fD~I~s~~~l~----h~~d~-------~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 328 ------YPDNSFDVIYSRDTIL----HIQDK-------PALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred ------CCCCCEEEEEECCccc----ccCCH-------HHHHHHHHHHcCCCeEEEEEEe
Confidence 4456899999976432 22232 3568889999999999998765
No 77
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.82 E-value=3.3e-08 Score=93.46 Aligned_cols=118 Identities=23% Similarity=0.285 Sum_probs=78.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CC-CCcEEEecCccChhhH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i-~gV~~i~gDIt~~~t~ 108 (316)
+..+|||+|||+|.++..++++.+ +.+|+|+|+++.+ .+ .+|.++++|+.+.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~-------------~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--- 184 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP-------------EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--- 184 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc---
Confidence 457999999999999999998763 4799999999842 12 2578899998642
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCC-CCCccH-----H-H-------HHHHHHHHHHHHHHcccCCcEEEEEEccCCCHH
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTG-LHDMDE-----F-V-------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 174 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG-~~~~de-----~-~-------~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~ 174 (316)
+.+.+||+|+||.+.-..+ ...... . . -..+....+..+.++|+|||.+++.+-. ...
T Consensus 185 ------~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~--~~~ 256 (284)
T TIGR03533 185 ------LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN--SME 256 (284)
T ss_pred ------cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--CHH
Confidence 2345799999996321111 010110 0 0 1234466788899999999999987642 234
Q ss_pred HHHHHHHh
Q 021161 175 LLYCQLKL 182 (316)
Q Consensus 175 ~l~~~l~~ 182 (316)
.+...+..
T Consensus 257 ~v~~~~~~ 264 (284)
T TIGR03533 257 ALEEAYPD 264 (284)
T ss_pred HHHHHHHh
Confidence 44444443
No 78
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.82 E-value=6.8e-09 Score=82.35 Aligned_cols=90 Identities=29% Similarity=0.471 Sum_probs=62.0
Q ss_pred EEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----------CCCCcEEEecCccChhhHHHHHhh
Q 021161 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 45 VLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----------~i~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
|||||||+|..+..+.+.+.. ++..+++++|+++.+ .-..++++++|+++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~----------~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~-------- 62 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDA----------GPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP-------- 62 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH--------
T ss_pred CEEeecCCcHHHHHHHHHhhh----------cccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc--------
Confidence 799999999999999988621 134799999999842 1137899999998853
Q ss_pred cCCccccEEEeCCC-CCCCCCCCccHHHHHHHHHHHHHHHHHcccCCc
Q 021161 115 FDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG 161 (316)
Q Consensus 115 ~~~~~~DlVvsDga-pdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG 161 (316)
+..++||+|+|-+. .. | ++. +-+.+.+..+.++|||||
T Consensus 63 ~~~~~~D~v~~~~~~~~----~-~~~----~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 63 FSDGKFDLVVCSGLSLH----H-LSP----EELEALLRRIARLLRPGG 101 (101)
T ss_dssp HHSSSEEEEEE-TTGGG----G-SSH----HHHHHHHHHHHHTEEEEE
T ss_pred ccCCCeeEEEEcCCccC----C-CCH----HHHHHHHHHHHHHhCCCC
Confidence 23469999999553 21 1 221 234567888999999998
No 79
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.82 E-value=4.8e-08 Score=94.76 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=79.9
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC--------CC--CcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE--GVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~--------i~--gV~~i~gDIt~~~t~~~I 111 (316)
..+|||||||+|.++..++++.+ ..+|+++|+++++- .. ...++.+|+.+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p-------------~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~------ 257 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP-------------KIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD------ 257 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc------
Confidence 35899999999999999998753 46899999998531 11 235667777542
Q ss_pred HhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhcCCceEEe
Q 021161 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFA 190 (316)
Q Consensus 112 ~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~F~~V~~~ 190 (316)
. .++||+|+||.++. .|... ........+..+.++|||||.|++-.-+...... .+...|..+.+.
T Consensus 258 ---~-~~~fDlIvsNPPFH-~g~~~-----~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~---~l~~~Fg~~~~l 323 (342)
T PRK09489 258 ---I-KGRFDMIISNPPFH-DGIQT-----SLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPD---LLDETFGSHEVL 323 (342)
T ss_pred ---c-CCCccEEEECCCcc-CCccc-----cHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHH---HHHHHcCCeEEE
Confidence 2 36899999997542 22211 1123456688899999999999875554444443 345568777665
No 80
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.81 E-value=3.4e-08 Score=90.40 Aligned_cols=99 Identities=18% Similarity=0.088 Sum_probs=72.3
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------C---CCCcEEEecCccChh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P---IEGVIQVQGDITNAR 106 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~---i~gV~~i~gDIt~~~ 106 (316)
+.++.+|||||||+|.++..+++++. .++++|+|+|+++.+ . ..+++++++|+.+..
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~-----------~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~ 119 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNIN-----------QPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE 119 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcC-----------CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC
Confidence 35778999999999999999998763 135799999998731 1 235789999998643
Q ss_pred hHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 107 t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
+ ..+|+|+|..+. |..... -...++..+.++|+|||.|++.-
T Consensus 120 --------~--~~~d~v~~~~~l-----~~~~~~----~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 120 --------I--KNASMVILNFTL-----QFLPPE----DRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred --------C--CCCCEEeeecch-----hhCCHH----HHHHHHHHHHHhcCCCeEEEEee
Confidence 2 358999987642 222211 12356888999999999999864
No 81
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.81 E-value=2.8e-08 Score=88.55 Aligned_cols=100 Identities=20% Similarity=0.263 Sum_probs=74.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------CCCCcEEEecCccChhhHHH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~i~gV~~i~gDIt~~~t~~~ 110 (316)
.++.+|||+|||+|.++..++++.+ ...+++++|+++.. ...+++++.+|+.+..
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~------------~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 101 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAP------------DRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP---- 101 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcC------------CCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC----
Confidence 3678999999999999999998864 22689999998732 1235788889988643
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~ 170 (316)
+..++||+|++... ++.... ...++..+.++|+|||.+++..+..
T Consensus 102 ----~~~~~~D~i~~~~~-----~~~~~~------~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 102 ----FEDNSFDAVTIAFG-----LRNVTD------IQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred ----CCCCcEEEEEEeee-----eCCccc------HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 34468999998643 232222 2356788899999999999866543
No 82
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=8.8e-08 Score=90.68 Aligned_cols=118 Identities=20% Similarity=0.204 Sum_probs=86.3
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~~~ 110 (316)
+.+|+|||||-|-.+.+++++.+ ..+|+.+|.+.++ .+++..+...|+.+.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p-------------~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~----- 220 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSP-------------QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP----- 220 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCC-------------CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-----
Confidence 34999999999999999999863 5799999999874 134445667777763
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhcCCceEEe
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFA 190 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~F~~V~~~ 190 (316)
.. ++||+||||.++. .|... ...+....+..|.+.|++||.+-+-+-+..... ..|+..|..|...
T Consensus 221 ----v~-~kfd~IisNPPfh-~G~~v-----~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~---~~L~~~Fg~v~~l 286 (300)
T COG2813 221 ----VE-GKFDLIISNPPFH-AGKAV-----VHSLAQEIIAAAARHLKPGGELWIVANRHLPYE---KKLKELFGNVEVL 286 (300)
T ss_pred ----cc-ccccEEEeCCCcc-CCcch-----hHHHHHHHHHHHHHhhccCCEEEEEEcCCCChH---HHHHHhcCCEEEE
Confidence 23 3899999997653 34322 233455678889999999999987665544444 4567789887776
Q ss_pred c
Q 021161 191 K 191 (316)
Q Consensus 191 K 191 (316)
.
T Consensus 287 a 287 (300)
T COG2813 287 A 287 (300)
T ss_pred E
Confidence 4
No 83
>PRK04457 spermidine synthase; Provisional
Probab=98.79 E-value=9.6e-08 Score=89.30 Aligned_cols=124 Identities=18% Similarity=0.218 Sum_probs=87.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----------C--CCCcEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------P--IEGVIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----------~--i~gV~~i~gDIt~~~t 107 (316)
.+..+|||||||.|.++..++++.+ ..+|++||+++.. + .++++++.+|..+.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-------------~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~-- 129 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-------------DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY-- 129 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH--
Confidence 4568999999999999999988763 5799999998841 1 25688899998653
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC-CCHHHHHHHHHhcCCc
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG-KDTSLLYCQLKLFFPV 186 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~-~~~~~l~~~l~~~F~~ 186 (316)
+... .++||+|++|.. +..+.. .+. .....+..+.++|+|||.|++-++.. .....++..++..|..
T Consensus 130 ----l~~~-~~~yD~I~~D~~-~~~~~~--~~l----~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~ 197 (262)
T PRK04457 130 ----IAVH-RHSTDVILVDGF-DGEGII--DAL----CTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEG 197 (262)
T ss_pred ----HHhC-CCCCCEEEEeCC-CCCCCc--ccc----CcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCC
Confidence 1122 358999999962 222211 100 12456788899999999999966543 3356677888888975
Q ss_pred -eEEe
Q 021161 187 -VTFA 190 (316)
Q Consensus 187 -V~~~ 190 (316)
+.++
T Consensus 198 ~~~~~ 202 (262)
T PRK04457 198 RVLEL 202 (262)
T ss_pred cEEEE
Confidence 4454
No 84
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.79 E-value=9.3e-08 Score=97.26 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=90.2
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CC-CCcEEEecCccChhhHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAE 109 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i-~gV~~i~gDIt~~~t~~ 109 (316)
+.+|||+|||+|.++..++++.+ +.+|+|+|+++.+ .+ .+|.++++|+.+.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-------------~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~---- 201 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-------------NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN---- 201 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-------------CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh----
Confidence 46899999999999999988763 4799999999842 12 2578888997542
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCC-C-------CccHHH-------HHHHHHHHHHHHHHcccCCcEEEEEEccCCCHH
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGL-H-------DMDEFV-------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 174 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~-~-------~~de~~-------~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~ 174 (316)
+..++||+|+||.+.-.+.. . +.+... -.......+..+.++|+|||.|++.+ ......
T Consensus 202 -----~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g~~q~~ 275 (506)
T PRK01544 202 -----IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-GFKQEE 275 (506)
T ss_pred -----CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-CCchHH
Confidence 33468999999963211110 0 001000 12334566778899999999999865 222344
Q ss_pred HHHHHHHh-cCCceEEecCCCCCCCCcceEEEE
Q 021161 175 LLYCQLKL-FFPVVTFAKPKSSRNSSIEAFAVC 206 (316)
Q Consensus 175 ~l~~~l~~-~F~~V~~~KP~sSR~~S~E~fvVc 206 (316)
.+...+.. .|..+.+.|-.+.+ ++++++
T Consensus 276 ~v~~~~~~~g~~~~~~~~D~~g~----~R~v~~ 304 (506)
T PRK01544 276 AVTQIFLDHGYNIESVYKDLQGH----SRVILI 304 (506)
T ss_pred HHHHHHHhcCCCceEEEecCCCC----ceEEEe
Confidence 44544443 47778888877665 455544
No 85
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.78 E-value=7.6e-08 Score=95.09 Aligned_cols=123 Identities=16% Similarity=0.129 Sum_probs=76.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CC--CCcEEEecCccChh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNAR 106 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i--~gV~~i~gDIt~~~ 106 (316)
.++.+|||||||+|+|+..++.. ...+|++||+++.+ .+ ..++++++|+.+.
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~--------------ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~- 283 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG--------------GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL- 283 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC--------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH-
Confidence 35789999999999998765532 13589999999842 23 2578999998763
Q ss_pred hHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCC-CHHHHHHHHHh
Q 021161 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK-DTSLLYCQLKL 182 (316)
Q Consensus 107 t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~-~~~~l~~~l~~ 182 (316)
++.+. ..+++||+|++|.+.-...-... .....-....+..+.++|+|||.|++....+. ....+...+..
T Consensus 284 -l~~~~--~~~~~fDlVilDPP~f~~~k~~l--~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~ 355 (396)
T PRK15128 284 -LRTYR--DRGEKFDVIVMDPPKFVENKSQL--MGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIAD 355 (396)
T ss_pred -HHHHH--hcCCCCCEEEECCCCCCCChHHH--HHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHH
Confidence 11111 12468999999974322111000 00111124456678899999999997554433 34445555443
No 86
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.77 E-value=1.4e-08 Score=85.68 Aligned_cols=99 Identities=20% Similarity=0.332 Sum_probs=69.0
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-CCCCcEEEecCccChhhHHHHHhhcCC
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-PIEGVIQVQGDITNARTAEVVIRHFDG 117 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-~i~gV~~i~gDIt~~~t~~~I~~~~~~ 117 (316)
..++.+|||+|||.|.++..+++.. .+|+++|+++.. ....+....-+..... ...
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~---------------~~~~g~D~~~~~~~~~~~~~~~~~~~~~~--------~~~ 76 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG---------------FEVTGVDISPQMIEKRNVVFDNFDAQDPP--------FPD 76 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT---------------SEEEEEESSHHHHHHTTSEEEEEECHTHH--------CHS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC---------------CEEEEEECCHHHHhhhhhhhhhhhhhhhh--------ccc
Confidence 5788999999999999999996542 499999999832 1122333333333221 235
Q ss_pred ccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCC
Q 021161 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (316)
Q Consensus 118 ~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~ 171 (316)
++||+|+|..... .+.. ...+|..+.++|||||.+++.++...
T Consensus 77 ~~fD~i~~~~~l~-----~~~d------~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 77 GSFDLIICNDVLE-----HLPD------PEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSEEEEEEESSGG-----GSSH------HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred cchhhHhhHHHHh-----hccc------HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 7999999986542 2221 24678889999999999999887543
No 87
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.77 E-value=4.1e-08 Score=88.21 Aligned_cols=91 Identities=12% Similarity=0.161 Sum_probs=67.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCC-CcEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~-gV~~i~gDIt~~~t 107 (316)
+++.+|||+|||+|..+..+++.++ ..++|+++|+++.+ .+. +++++.+|..+..
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~------------~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~- 137 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIE------------RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL- 137 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC-
Confidence 5778999999999999999998874 34799999999731 122 4788999987531
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
....+||+|+++++.. .. .....+.|+|||.|++-+
T Consensus 138 -------~~~~~fD~Ii~~~~~~-----~~------------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 138 -------EKHAPFDAIIVTAAAS-----TI------------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred -------ccCCCccEEEEccCcc-----hh------------hHHHHHhcCcCcEEEEEE
Confidence 1235899999987531 11 124568899999998854
No 88
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.77 E-value=2.3e-08 Score=89.14 Aligned_cols=100 Identities=17% Similarity=0.088 Sum_probs=66.9
Q ss_pred HHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CCCC--cEEEecCcc
Q 021161 34 EEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEG--VIQVQGDIT 103 (316)
Q Consensus 34 ~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i~g--V~~i~gDIt 103 (316)
+.+.... +.+|||+|||+|.++..++++. .+|+|+|+++.+ .-.| +....+|+.
T Consensus 24 ~~~~~~~-~~~vLDiGcG~G~~a~~la~~g---------------~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~ 87 (195)
T TIGR00477 24 EAVKTVA-PCKTLDLGCGQGRNSLYLSLAG---------------YDVRAWDHNPASIASVLDMKARENLPLRTDAYDIN 87 (195)
T ss_pred HHhccCC-CCcEEEeCCCCCHHHHHHHHCC---------------CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccch
Confidence 3444444 4699999999999999999742 589999999842 0122 556667765
Q ss_pred ChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 104 ~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
... +. .+||+|+|.... +..+. ......+..+.++|+|||.|++-.
T Consensus 88 ~~~--------~~-~~fD~I~~~~~~-----~~~~~----~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 88 AAA--------LN-EDYDFIFSTVVF-----MFLQA----GRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred hcc--------cc-CCCCEEEEeccc-----ccCCH----HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 422 23 479999997643 22221 112355788899999999966533
No 89
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.76 E-value=6.8e-08 Score=92.65 Aligned_cols=110 Identities=17% Similarity=0.117 Sum_probs=75.6
Q ss_pred hhhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------------C
Q 021161 24 RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------P 91 (316)
Q Consensus 24 Rsa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------------~ 91 (316)
||-+|...+......+ ++.+|||+|||+|.++..++... ...|+|||.++.. .
T Consensus 105 ~s~~~~~~~l~~l~~~-~g~~VLDvGCG~G~~~~~~~~~g--------------~~~v~GiDpS~~ml~q~~~~~~~~~~ 169 (314)
T TIGR00452 105 RSDIKWDRVLPHLSPL-KGRTILDVGCGSGYHMWRMLGHG--------------AKSLVGIDPTVLFLCQFEAVRKLLDN 169 (314)
T ss_pred HHHHHHHHHHHhcCCC-CCCEEEEeccCCcHHHHHHHHcC--------------CCEEEEEcCCHHHHHHHHHHHHHhcc
Confidence 4556655555555443 46899999999999987777542 2479999998831 1
Q ss_pred CCCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEc
Q 021161 92 IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (316)
Q Consensus 92 i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 168 (316)
...+.++.+|+.+.. . ..+||+|+|.+... |-.+. ...|..+.++|||||.||+..+
T Consensus 170 ~~~v~~~~~~ie~lp--------~-~~~FD~V~s~gvL~----H~~dp-------~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 170 DKRAILEPLGIEQLH--------E-LYAFDTVFSMGVLY----HRKSP-------LEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CCCeEEEECCHHHCC--------C-CCCcCEEEEcchhh----ccCCH-------HHHHHHHHHhcCCCCEEEEEEE
Confidence 235667777776542 1 24799999987432 22221 3568889999999999998754
No 90
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.76 E-value=2.8e-08 Score=91.69 Aligned_cols=99 Identities=23% Similarity=0.202 Sum_probs=71.6
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CC-CCcEEEecCccChh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i-~gV~~i~gDIt~~~ 106 (316)
+.++.+|||||||+|.++..+++.+. .++++|+|+|+++.+ .. .+++++++|+.+..
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~-----------~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~ 122 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIH-----------HDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA 122 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcC-----------CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC
Confidence 46788999999999999999887652 145799999999832 12 26889999987642
Q ss_pred hHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 107 t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
...+|+|++.... |.++.. -...++..+.++|||||.|++.-
T Consensus 123 ----------~~~~D~vv~~~~l-----~~l~~~----~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 123 ----------IENASMVVLNFTL-----QFLEPS----ERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred ----------CCCCCEEehhhHH-----HhCCHH----HHHHHHHHHHHhcCCCCEEEEEE
Confidence 2359999986432 222211 12356788999999999998853
No 91
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.75 E-value=4.7e-08 Score=93.46 Aligned_cols=104 Identities=21% Similarity=0.305 Sum_probs=72.4
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CC-CCcEEEecCccChhhHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAEV 110 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i-~gV~~i~gDIt~~~t~~~ 110 (316)
.+|||+|||+|.++..++++.+ ..+|+|+|+++.+ .+ ..|+++++|+.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-------------~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----- 196 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-------------DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----- 196 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-----
Confidence 6899999999999999998753 4799999999842 12 2488999998642
Q ss_pred HHhhcCCccccEEEeCCCCCCCC-CCCccHH-------------HHHHHHHHHHHHHHHcccCCcEEEEEEc
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTG-LHDMDEF-------------VQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG-~~~~de~-------------~~~~L~~aaL~~a~~vLkpGG~fV~Kif 168 (316)
+..++||+|+||.+.-..+ ....... ....+....+..+.++|+|||.+++.+-
T Consensus 197 ----l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 197 ----LPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ----CCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 2345799999995321110 0000000 0123456778899999999999998764
No 92
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.75 E-value=5.2e-08 Score=87.16 Aligned_cols=118 Identities=19% Similarity=0.274 Sum_probs=80.0
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC---------CCCCCcEEEecCccChhhHHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~---------~~i~gV~~i~gDIt~~~t~~~I~ 112 (316)
-.+++|+|||.|.+|..|+.+. ..++++|+++- +..++|+++++|+...
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC---------------d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~------- 101 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC---------------DRLLAVDISPRALARARERLAGLPHVEWIQADVPEF------- 101 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE---------------EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT--------
T ss_pred cceeEecCCCccHHHHHHHHhh---------------CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-------
Confidence 3689999999999999999886 38999999984 3468999999999874
Q ss_pred hhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC---------CCHHHHHHHHHhc
Q 021161 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG---------KDTSLLYCQLKLF 183 (316)
Q Consensus 113 ~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~---------~~~~~l~~~l~~~ 183 (316)
.+.++|||||+..... -++. ...+..++..+...|+|||.||+-.++. .....+...|...
T Consensus 102 --~P~~~FDLIV~SEVlY-----YL~~---~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 102 --WPEGRFDLIVLSEVLY-----YLDD---AEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH 171 (201)
T ss_dssp ----SS-EEEEEEES-GG-----GSSS---HHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH
T ss_pred --CCCCCeeEEEEehHhH-----cCCC---HHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH
Confidence 3568999999864211 1111 1223556778889999999999988762 1345677788888
Q ss_pred CCceEEec
Q 021161 184 FPVVTFAK 191 (316)
Q Consensus 184 F~~V~~~K 191 (316)
|.+|....
T Consensus 172 ~~~~~~~~ 179 (201)
T PF05401_consen 172 LTEVERVE 179 (201)
T ss_dssp SEEEEEEE
T ss_pred hhheeEEE
Confidence 87776653
No 93
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=2.2e-07 Score=87.73 Aligned_cols=128 Identities=23% Similarity=0.279 Sum_probs=84.1
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------C---CCCcEEEecCccChhhHHHHH
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---IEGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~---i~gV~~i~gDIt~~~t~~~I~ 112 (316)
+|||||||+|..+..++++.+ ...|+|+|+++-+ . +.++.++++|..+.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-------------~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~------- 172 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-------------DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP------- 172 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-------------CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-------
Confidence 799999999999999998863 5799999999943 1 23356667776653
Q ss_pred hhcCCccccEEEeCCCCCCCCC--CCccH-----H---H-----HHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHH
Q 021161 113 RHFDGCKADLVVCDGAPDVTGL--HDMDE-----F---V-----QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLY 177 (316)
Q Consensus 113 ~~~~~~~~DlVvsDgapdvtG~--~~~de-----~---~-----~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~ 177 (316)
+.+ +||+||||.+ .+..- +..++ . + -.......+..+...|+|||.+++.+=. .....+.
T Consensus 173 --~~~-~fDlIVsNPP-Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-~q~~~v~ 247 (280)
T COG2890 173 --LRG-KFDLIVSNPP-YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-TQGEAVK 247 (280)
T ss_pred --cCC-ceeEEEeCCC-CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-CcHHHHH
Confidence 333 8999999974 22211 11111 1 0 1345677788999999999999987632 2233344
Q ss_pred HHHHh-c-CCceEEecCCCCC
Q 021161 178 CQLKL-F-FPVVTFAKPKSSR 196 (316)
Q Consensus 178 ~~l~~-~-F~~V~~~KP~sSR 196 (316)
..+.. . |..|...|....+
T Consensus 248 ~~~~~~~~~~~v~~~~d~~g~ 268 (280)
T COG2890 248 ALFEDTGFFEIVETLKDLFGR 268 (280)
T ss_pred HHHHhcCCceEEEEEecCCCc
Confidence 33333 2 5667777665444
No 94
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=98.73 E-value=7.6e-08 Score=88.94 Aligned_cols=142 Identities=25% Similarity=0.265 Sum_probs=86.5
Q ss_pred CCCeEEEECCC------CCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCCCCCcEEEecCccChhhHHHHHhh
Q 021161 41 GVKRVVDLCAA------PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 41 ~~~rVLDLcag------PG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~i~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
..+||++|||| || +.+|.+.++ .++.+|-.|+.+.....++ .+.||.+...
T Consensus 61 ~nMrVlHlGAgSdkGvaPG--t~VLrqwlP------------~~ailvDnDi~d~vSDa~~-~~~~Dc~t~~-------- 117 (299)
T PF06460_consen 61 HNMRVLHLGAGSDKGVAPG--TAVLRQWLP------------EDAILVDNDIRDYVSDADQ-SIVGDCRTYM-------- 117 (299)
T ss_dssp TT-EEEEES---TTSB-HH--HHHHHHHS-------------TT-EEEEEESS--B-SSSE-EEES-GGGEE--------
T ss_pred cCcEEEEecccccCCcCCc--hHHHHHhCC------------CCcEEEecchhhhccccCC-ceeccccccC--------
Confidence 35899999974 66 467888886 4689999999997654444 5678877643
Q ss_pred cCCccccEEEeCCCC----CCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhcCCceEEe
Q 021161 115 FDGCKADLVVCDGAP----DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFA 190 (316)
Q Consensus 115 ~~~~~~DlVvsDgap----dvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~F~~V~~~ 190 (316)
...++|+|+||+-- .+.|...-.+ .+.--....+.+-|+-||++.+|+-......+|+++++ +|+..+++
T Consensus 118 -~~~k~DlIiSDmYd~~~k~~~~~n~~~~----~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~~-~F~~wt~F 191 (299)
T PF06460_consen 118 -PPDKFDLIISDMYDGRTKNCDGENNSKE----GFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELMG-YFSWWTCF 191 (299)
T ss_dssp -ESS-EEEEEE----TTS-SS-S----------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHHT-TEEEEEEE
T ss_pred -CCCcccEEEEecccccccccccccCCcc----ccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHHh-hcccEEEE
Confidence 35799999999841 1111111111 11123456788899999999999977666677777665 57777776
Q ss_pred cCCCCCCCCcceEEEEecccCC
Q 021161 191 KPKSSRNSSIEAFAVCENYFPP 212 (316)
Q Consensus 191 KP~sSR~~S~E~fvVc~gf~~p 212 (316)
.- +-..+|+|.|++|.+|.+.
T Consensus 192 cT-~VNtSSSEaFLigiNYLg~ 212 (299)
T PF06460_consen 192 CT-AVNTSSSEAFLIGINYLGK 212 (299)
T ss_dssp EE-GGGTTSS-EEEEEEEE-SS
T ss_pred ec-ccCccccceeEEeeeccCc
Confidence 53 5567899999999999987
No 95
>PRK00811 spermidine synthase; Provisional
Probab=98.73 E-value=1.7e-07 Score=88.57 Aligned_cols=142 Identities=20% Similarity=0.199 Sum_probs=95.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----------------CCCCcEEEecCcc
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------PIEGVIQVQGDIT 103 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----------------~i~gV~~i~gDIt 103 (316)
.+..+||+||||.|+.+..+.++. ...+|++||+++.. ..++|+++.+|..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-------------~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~ 141 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-------------SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGI 141 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-------------CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchH
Confidence 356899999999999999887653 23589999999841 1246888899976
Q ss_pred ChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC----CCHHHHHHH
Q 021161 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG----KDTSLLYCQ 179 (316)
Q Consensus 104 ~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~----~~~~~l~~~ 179 (316)
.. + .. ..++||+|++|..... +. ...+ .....+..+.++|+|||.|++..-.. .....+...
T Consensus 142 ~~-----l-~~-~~~~yDvIi~D~~dp~-~~---~~~l---~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~t 207 (283)
T PRK00811 142 KF-----V-AE-TENSFDVIIVDSTDPV-GP---AEGL---FTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRK 207 (283)
T ss_pred HH-----H-hh-CCCcccEEEECCCCCC-Cc---hhhh---hHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHH
Confidence 52 1 11 3468999999974322 11 1100 12455678889999999999853221 223456677
Q ss_pred HHhcCCceEEec-CCCCCCCCcceEEEEec
Q 021161 180 LKLFFPVVTFAK-PKSSRNSSIEAFAVCEN 208 (316)
Q Consensus 180 l~~~F~~V~~~K-P~sSR~~S~E~fvVc~g 208 (316)
++..|..|..+. +..+.+...-.|++|..
T Consensus 208 l~~~F~~v~~~~~~vp~~~~~~w~f~~as~ 237 (283)
T PRK00811 208 LKEVFPIVRPYQAAIPTYPSGLWSFTFASK 237 (283)
T ss_pred HHHHCCCEEEEEeECCcccCchheeEEeec
Confidence 888899988875 33344444456888865
No 96
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.73 E-value=2.7e-08 Score=95.69 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=70.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------C-CCCcEEEecCccChhhH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTA 108 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~-i~gV~~i~gDIt~~~t~ 108 (316)
++.+|||+|||+|.++..+++. +.+|+|||+++.+ . ..+++++++|+.+..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---------------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-- 193 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---------------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-- 193 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---------------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh--
Confidence 5679999999999999988863 2689999999731 1 136888889876532
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~ 170 (316)
+..++||+|+|..... |-.|. ..++..+.++|||||.|++.++..
T Consensus 194 ------~~~~~FD~Vi~~~vLe----Hv~d~-------~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 194 ------DEGRKFDAVLSLEVIE----HVANP-------AEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred ------hccCCCCEEEEhhHHH----hcCCH-------HHHHHHHHHHcCCCcEEEEEECCc
Confidence 2346899999965321 11221 356778889999999999987643
No 97
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.72 E-value=2.2e-07 Score=83.68 Aligned_cols=99 Identities=24% Similarity=0.298 Sum_probs=72.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------C---CCCcEEEecCccChhhH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P---IEGVIQVQGDITNARTA 108 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~---i~gV~~i~gDIt~~~t~ 108 (316)
++.+|||+|||+|.++..+++.++ ...+|+++|+++.. . ...++++.+|+.+..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~------------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-- 116 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVG------------KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-- 116 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcC------------CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--
Confidence 678999999999999999998763 24799999998731 1 135788889998743
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~ 170 (316)
+..+++|+|++... ++.... ....+..+.++|+|||.+++..+..
T Consensus 117 ------~~~~~~D~I~~~~~-----l~~~~~------~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 117 ------FPDNSFDAVTIAFG-----LRNVPD------IDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred ------CCCCCccEEEEecc-----cccCCC------HHHHHHHHHHhccCCcEEEEEEecC
Confidence 34468999998642 222222 1345778889999999998865543
No 98
>PRK05785 hypothetical protein; Provisional
Probab=98.69 E-value=5.8e-08 Score=88.78 Aligned_cols=88 Identities=24% Similarity=0.260 Sum_probs=64.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-CC--CCcEEEecCccChhhHHHHHhhcC
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-PI--EGVIQVQGDITNARTAEVVIRHFD 116 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-~i--~gV~~i~gDIt~~~t~~~I~~~~~ 116 (316)
.++.+|||||||||.++..++++. +.+|+|+|+++.+ .. .....+++|+.+.+ +.
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~--------------~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp--------~~ 107 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF--------------KYYVVALDYAENMLKMNLVADDKVVGSFEALP--------FR 107 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc--------------CCEEEEECCCHHHHHHHHhccceEEechhhCC--------CC
Confidence 357899999999999999888764 2589999999832 11 12345788887653 56
Q ss_pred CccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCC
Q 021161 117 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG 160 (316)
Q Consensus 117 ~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpG 160 (316)
.++||+|+|..+ +|+.+. ...++..+.++|||.
T Consensus 108 d~sfD~v~~~~~-----l~~~~d------~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 108 DKSFDVVMSSFA-----LHASDN------IEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCEEEEEecCh-----hhccCC------HHHHHHHHHHHhcCc
Confidence 689999999653 344332 246789999999994
No 99
>PRK06922 hypothetical protein; Provisional
Probab=98.67 E-value=9.8e-08 Score=98.76 Aligned_cols=103 Identities=22% Similarity=0.319 Sum_probs=72.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CC--CCcEEEecCccChhhHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI--EGVIQVQGDITNARTAEV 110 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i--~gV~~i~gDIt~~~t~~~ 110 (316)
++.+|||+|||+|.++..++++.+ +.+|+|+|+++.+ .. .++.++++|+.+..
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P-------------~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp---- 480 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE-------------DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLS---- 480 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCc----
Confidence 578999999999999999988753 5799999999841 11 24677889987642
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHH-------HHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFV-------QSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~-------~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
..+..++||+|++.... |.+-.++ ...-...+|..+.++|||||.|++-.
T Consensus 481 --~~fedeSFDvVVsn~vL-----H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 481 --SSFEKESVDTIVYSSIL-----HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred --cccCCCCEEEEEEchHH-----HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 13556789999987432 1110000 01224567889999999999999853
No 100
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.67 E-value=4.4e-07 Score=80.53 Aligned_cols=107 Identities=20% Similarity=0.230 Sum_probs=82.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
+++.+++|+|||+|+.+.-++ +.+ +.++|+|+|-.+.+ ..+|+..+.||.-+.
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a-~~~------------p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~--- 96 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWA-LAG------------PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA--- 96 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHH-HhC------------CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh---
Confidence 788999999999999999999 543 57899999988742 267899999997652
Q ss_pred HHHHhhcCC-ccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhc
Q 021161 109 EVVIRHFDG-CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 183 (316)
Q Consensus 109 ~~I~~~~~~-~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~ 183 (316)
+.+ .++|.|+-.|. .+++ ..|+.+...|||||++|+-.-+-++...++..++..
T Consensus 97 ------L~~~~~~daiFIGGg------~~i~---------~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~ 151 (187)
T COG2242 97 ------LPDLPSPDAIFIGGG------GNIE---------EILEAAWERLKPGGRLVANAITLETLAKALEALEQL 151 (187)
T ss_pred ------hcCCCCCCEEEECCC------CCHH---------HHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHc
Confidence 222 26999998774 2222 457889999999999999877766666666666654
No 101
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.67 E-value=1.2e-07 Score=99.95 Aligned_cols=107 Identities=16% Similarity=0.077 Sum_probs=72.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CC--CCcEEEecCccChhh
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNART 107 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i--~gV~~i~gDIt~~~t 107 (316)
++.+|||||||+|+++..+++.. ..+|++||+++.+ .+ .+++++++|+.+.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G--------------a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~-- 601 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG--------------AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW-- 601 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC--------------CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH--
Confidence 57899999999999999998742 2479999999842 23 2588999998752
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEc
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 168 (316)
++.+ +++||+|++|.+.-..+....+......-....+..+.++|+|||.+++...
T Consensus 602 ----l~~~-~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 602 ----LKEA-REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred ----HHHc-CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 1122 4689999999643222111001111122234567788999999999987543
No 102
>PHA03412 putative methyltransferase; Provisional
Probab=98.66 E-value=9e-08 Score=88.18 Aligned_cols=102 Identities=16% Similarity=0.250 Sum_probs=68.0
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCCCcEEEecCccChhhHHHHHhhc
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHF 115 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~gV~~i~gDIt~~~t~~~I~~~~ 115 (316)
+.+|||+|||+|.++..+++++... ....|+|||+++.+ ..+++.++++|+.+.. +
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~----------~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~--------~ 111 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYA----------KPREIVCVELNHTYYKLGKRIVPEATWINADALTTE--------F 111 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccC----------CCcEEEEEECCHHHHHHHHhhccCCEEEEcchhccc--------c
Confidence 5799999999999999999876311 24689999999953 3567889999987532 2
Q ss_pred CCccccEEEeCCCCCCCCCCCcc-HHHHHHHHHHHHHHHHHcccCCcE
Q 021161 116 DGCKADLVVCDGAPDVTGLHDMD-EFVQSQLILAGLTVVTHVLKEGGK 162 (316)
Q Consensus 116 ~~~~~DlVvsDgapdvtG~~~~d-e~~~~~L~~aaL~~a~~vLkpGG~ 162 (316)
..+||+||||.+.-.....+.. .+....+....+..|.+++++|+-
T Consensus 112 -~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 112 -DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred -cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 2589999999754322211110 011123345567777786666653
No 103
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.66 E-value=1.9e-07 Score=86.41 Aligned_cols=110 Identities=19% Similarity=0.220 Sum_probs=71.7
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC--------CCCcEEEecCccChhhHHH
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~--------i~gV~~i~gDIt~~~t~~~ 110 (316)
..++.+|||+|||+|..+..+++. + ..+|+|+|+++.+- ..++. ..+. ..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-------------~~~v~giDis~~~l~~A~~n~~~~~~~---~~~~-~~---- 174 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-------------AKKVLAVDIDPQAVEAARENAELNGVE---LNVY-LP---- 174 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHHHHHHcCCC---ceEE-Ec----
Confidence 357899999999999888776553 2 24699999998531 12221 0010 00
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhc-CCceE
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVVT 188 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~-F~~V~ 188 (316)
....+||+|+|+... ..+...+..+.++|||||.|++.-+.......+...++.. |+-+.
T Consensus 175 ----~~~~~fD~Vvani~~--------------~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 175 ----QGDLKADVIVANILA--------------NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred ----cCCCCcCEEEEcCcH--------------HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEE
Confidence 011269999997521 1123456788999999999999766555667777777665 65443
No 104
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.64 E-value=1.5e-07 Score=84.82 Aligned_cols=101 Identities=17% Similarity=0.241 Sum_probs=69.8
Q ss_pred hhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCCCcEEEecCccCh
Q 021161 32 IDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNA 105 (316)
Q Consensus 32 Id~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~gV~~i~gDIt~~ 105 (316)
+.+....+.++.+|||+|||+|.++..+++.++ ..+|+|||+++.+ ..+++.+.++|+.+.
T Consensus 34 ~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-------------~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~ 100 (204)
T TIGR03587 34 FARALNRLPKIASILELGANIGMNLAALKRLLP-------------FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDP 100 (204)
T ss_pred HHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCC
Confidence 333344456778999999999999999988753 4689999999842 256788889998762
Q ss_pred hhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 106 ~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
+..++||+|+|.+... | ++. .....++..+.+++ ++.+++
T Consensus 101 ---------~~~~sfD~V~~~~vL~----h-l~p----~~~~~~l~el~r~~--~~~v~i 140 (204)
T TIGR03587 101 ---------FKDNFFDLVLTKGVLI----H-INP----DNLPTAYRELYRCS--NRYILI 140 (204)
T ss_pred ---------CCCCCEEEEEECChhh----h-CCH----HHHHHHHHHHHhhc--CcEEEE
Confidence 4567899999986431 2 121 12345566677776 344444
No 105
>PHA03411 putative methyltransferase; Provisional
Probab=98.64 E-value=1.6e-07 Score=88.26 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCCCcEEEecCccChhhHHHHHhh
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
...+|||||||+|.++..++++.+ ..+|+++|+++.+ ..+++.++++|+.+..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~-------------~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-------- 122 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCK-------------PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-------- 122 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc--------
Confidence 456999999999999998887652 3689999999942 2567889999987631
Q ss_pred cCCccccEEEeCCCCCCCCCCCccHHHHH-------H-H-HHHHHHHHHHcccCCcEEEEEEccC
Q 021161 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQS-------Q-L-ILAGLTVVTHVLKEGGKFIAKIFRG 170 (316)
Q Consensus 115 ~~~~~~DlVvsDgapdvtG~~~~de~~~~-------~-L-~~aaL~~a~~vLkpGG~fV~Kif~~ 170 (316)
...+||+|++|.+.......+....... + | +.+.+.....+|+|+|.+..- +.+
T Consensus 123 -~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss 185 (279)
T PHA03411 123 -SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSG 185 (279)
T ss_pred -ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-Eec
Confidence 2368999999976433222111111111 1 1 245667778899999988763 443
No 106
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.64 E-value=1.9e-07 Score=91.84 Aligned_cols=103 Identities=12% Similarity=0.118 Sum_probs=76.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-----------CCCCCcEEEecCccChhhHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAE 109 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-----------~~i~gV~~i~gDIt~~~t~~ 109 (316)
.+..+||+|||+|.++..++++.+ +..++|+|+++- ..+.+|.++++|+..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-------------~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~----- 183 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-------------NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARL----- 183 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-------------CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH-----
Confidence 456999999999999999999863 579999999972 136789999999864
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHH-HHHHHHHHHHcccCCcEEEEEEc
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIF 168 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L-~~aaL~~a~~vLkpGG~fV~Kif 168 (316)
+.+.+..+++|.|++..+ +. |..... -.+ ....+..+.++|+|||.+.+++-
T Consensus 184 -ll~~~~~~s~D~I~lnFP-dP---W~KkrH--RRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 184 -LLELLPSNSVEKIFVHFP-VP---WDKKPH--RRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred -hhhhCCCCceeEEEEeCC-CC---ccccch--hhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 233467789999999853 21 111111 111 25678999999999999999764
No 107
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=7.6e-08 Score=91.40 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=76.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC--------CCCcEE-EecCccChhhHHH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEGVIQ-VQGDITNARTAEV 110 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~--------i~gV~~-i~gDIt~~~t~~~ 110 (316)
+++++|||+|||+|..|.++++. + ..+|+|+|+.|.+- ..+|.. ++.-..+..
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-G-------------A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~---- 222 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-G-------------AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLL---- 222 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-C-------------CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccch----
Confidence 58999999999999999777654 3 35899999999751 334431 111111111
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHH-HhcCCceEE
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL-KLFFPVVTF 189 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l-~~~F~~V~~ 189 (316)
....+++||+||||. .+..+......+.++|||||++++.=.-......+...+ +.-|.-+.+
T Consensus 223 --~~~~~~~~DvIVANI--------------LA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 223 --EVPENGPFDVIVANI--------------LAEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred --hhcccCcccEEEehh--------------hHHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEE
Confidence 112346999999984 223344556778899999999998632223345555555 445766666
Q ss_pred ecC
Q 021161 190 AKP 192 (316)
Q Consensus 190 ~KP 192 (316)
...
T Consensus 287 ~~~ 289 (300)
T COG2264 287 LER 289 (300)
T ss_pred Eec
Confidence 543
No 108
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.63 E-value=1.2e-07 Score=89.46 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=66.4
Q ss_pred CcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChh
Q 021161 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNAR 106 (316)
Q Consensus 38 ~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~ 106 (316)
.+++ .+|||+|||+|.++..++++ +.+|+|+|+++.+ .+ ++.+..+|+....
T Consensus 118 ~~~~-~~vLDlGcG~G~~~~~la~~---------------g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~ 180 (287)
T PRK12335 118 TVKP-GKALDLGCGQGRNSLYLALL---------------GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSAS 180 (287)
T ss_pred ccCC-CCEEEeCCCCCHHHHHHHHC---------------CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhccc
Confidence 3444 49999999999999999874 2689999999842 12 5677778876532
Q ss_pred hHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 107 t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
+ .++||+|+|.+.. +..+. +.....+..+.++|+|||.+++
T Consensus 181 --------~-~~~fD~I~~~~vl-----~~l~~----~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 181 --------I-QEEYDFILSTVVL-----MFLNR----ERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred --------c-cCCccEEEEcchh-----hhCCH----HHHHHHHHHHHHhcCCCcEEEE
Confidence 2 3689999997632 11221 1234567888999999999765
No 109
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.63 E-value=3.2e-07 Score=90.36 Aligned_cols=121 Identities=18% Similarity=0.170 Sum_probs=81.1
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CCC-----CcEEEecCccChhhH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIE-----GVIQVQGDITNARTA 108 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i~-----gV~~i~gDIt~~~t~ 108 (316)
|++||||+|=||+||.+++... ..+|++||++.-+ .+. .+.++++|+.+. +
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG--------------A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~--l 281 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG--------------ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW--L 281 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC--------------CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH--H
Confidence 8899999999999999988642 2489999999842 122 357899999864 1
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc-CCCHHHHHHHHHh
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR-GKDTSLLYCQLKL 182 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~-~~~~~~l~~~l~~ 182 (316)
+... -.+.+||+||.|++.-.. .-.+++...+-....+..+.++|+|||++++.... .-....+...+..
T Consensus 282 ~~~~--~~g~~fDlIilDPPsF~r--~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~ 352 (393)
T COG1092 282 RKAE--RRGEKFDLIILDPPSFAR--SKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIAR 352 (393)
T ss_pred HHHH--hcCCcccEEEECCccccc--CcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHH
Confidence 1111 135699999999632111 11222323333456678899999999999987654 3455555555443
No 110
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.62 E-value=2.5e-07 Score=89.08 Aligned_cols=91 Identities=25% Similarity=0.296 Sum_probs=67.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
+++.+|||+|||+|.++..+++..+ ..+.|+++|+++.. .+.+|.++++|+....
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~------------~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~-- 144 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVG------------EKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV-- 144 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc--
Confidence 5778999999999999999998764 23689999999831 2457888999976431
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
....+||+|+++++ .++. .....+.|+|||.+++.+
T Consensus 145 ------~~~~~fD~Ii~~~g-----~~~i------------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 ------PEFAPYDVIFVTVG-----VDEV------------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ------cccCCccEEEECCc-----hHHh------------HHHHHHhcCCCCEEEEEe
Confidence 12257999999753 2211 123467899999999865
No 111
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.61 E-value=6e-08 Score=76.33 Aligned_cols=88 Identities=20% Similarity=0.227 Sum_probs=49.9
Q ss_pred EEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-----------CCCcEEEecCccChhhHHHHHhh
Q 021161 46 VDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 46 LDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-----------i~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
||+|||+|.++..+.++.+ ..+++++|+++.+- ...+..++.+..+.. ..
T Consensus 1 LdiGcG~G~~~~~l~~~~~-------------~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~------~~ 61 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-------------DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLF------DY 61 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---------C
T ss_pred CEeCccChHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChh------hc
Confidence 7999999999999998863 57999999999531 112334444433321 11
Q ss_pred cCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEE
Q 021161 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKF 163 (316)
Q Consensus 115 ~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~f 163 (316)
...++||+|++...... +.. ...++..+.++|+|||.|
T Consensus 62 ~~~~~fD~V~~~~vl~~-----l~~------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 62 DPPESFDLVVASNVLHH-----LED------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp CC----SEEEEE-TTS-------S-------HHHHHHHHTTT-TSS-EE
T ss_pred ccccccceehhhhhHhh-----hhh------HHHHHHHHHHHcCCCCCC
Confidence 22258999999754322 211 246788899999999986
No 112
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.59 E-value=1.2e-07 Score=85.39 Aligned_cols=93 Identities=20% Similarity=0.191 Sum_probs=67.7
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CC-CCcEEEecCccChhhHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAEV 110 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i-~gV~~i~gDIt~~~t~~~ 110 (316)
.+|||+|||+|+++..+++..+ +.+|+++|+++.+ .+ ..++++.+|+....
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-------------~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~---- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-------------HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP---- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC----
Confidence 4799999999999999998763 4789999998742 11 24688889986532
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEc
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 168 (316)
+. ++||+|++....... .+ ....+..+.++|+|||.|++..+
T Consensus 64 ----~~-~~fD~I~~~~~l~~~----~~-------~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 64 ----FP-DTYDLVFGFEVIHHI----KD-------KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred ----CC-CCCCEeehHHHHHhC----CC-------HHHHHHHHHHHcCCCCEEEEEEc
Confidence 22 479999986533211 11 13567888999999999998654
No 113
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.55 E-value=2.1e-07 Score=93.46 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------CCCCcEEEecCccChhhHHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~i~gV~~i~gDIt~~~t~~~I 111 (316)
++.+|||||||+|.++..++++. .+|+|+|+++.+ ..++++++++|+.+...
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~---------------~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~---- 97 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA---------------GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDL---- 97 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC---------------CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccccc----
Confidence 56799999999999999999863 489999999832 13568899999975321
Q ss_pred HhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 112 ~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
.+..++||+|+|..+.. |-.++ ....++..+.++|||||.|+++
T Consensus 98 --~~~~~~fD~I~~~~~l~----~l~~~-----~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 98 --NISDGSVDLIFSNWLLM----YLSDK-----EVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred --CCCCCCEEEEehhhhHH----hCCHH-----HHHHHHHHHHHhcCCCeEEEEE
Confidence 24557899999986432 11111 1246678889999999999986
No 114
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.54 E-value=5.1e-07 Score=81.14 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=65.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
+++.+|||+|||+|.++..+++.. .+|+++|+++.. .+.++++..+|..+..
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~---------------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 139 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV---------------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW-- 139 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh---------------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC--
Confidence 578899999999999999887653 379999999732 2456888999986521
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEc
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 168 (316)
...++||+|+++++.. .+ .....+.|+|||.+++-+.
T Consensus 140 ------~~~~~fD~I~~~~~~~-----~~------------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 ------PAYAPFDRILVTAAAP-----EI------------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ------CcCCCcCEEEEccCch-----hh------------hHHHHHhcCCCcEEEEEEc
Confidence 1236899999986431 11 1234679999999998654
No 115
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.54 E-value=2e-07 Score=85.65 Aligned_cols=95 Identities=23% Similarity=0.243 Sum_probs=65.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CCCCcE--EEecCccChhhHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVI--QVQGDITNARTAEV 110 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i~gV~--~i~gDIt~~~t~~~ 110 (316)
.|.+|||+|||=|.+|+-+++. +..|+|+|+++.. ...|+. ..+..+.+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~---------------Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~ed------ 117 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL---------------GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVED------ 117 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC---------------CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHH------
Confidence 7889999999999999999874 3799999999852 123454 33333333
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
+. ..+++||+|+|--.. .|..|+ ...+..+.+++||||.++..+..
T Consensus 118 l~--~~~~~FDvV~cmEVl----EHv~dp-------~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 118 LA--SAGGQFDVVTCMEVL----EHVPDP-------ESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred HH--hcCCCccEEEEhhHH----HccCCH-------HHHHHHHHHHcCCCcEEEEeccc
Confidence 22 234799999995321 122332 24577889999999999887653
No 116
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.53 E-value=7.1e-07 Score=84.95 Aligned_cols=110 Identities=18% Similarity=0.148 Sum_probs=69.6
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----------CCCC--cEEEecCccChh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEG--VIQVQGDITNAR 106 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----------~i~g--V~~i~gDIt~~~ 106 (316)
+.++.+|||||||+|.++..|++.+. ...++++||+++-+ ..++ |..++||+++..
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~------------~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALR------------QPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL 128 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhc------------cCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence 35678999999999999999998873 14689999999831 1345 456899998742
Q ss_pred hHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCC
Q 021161 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (316)
Q Consensus 107 t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~ 172 (316)
. +....... ..+++.-|.. +++.+..- ....|..+.++|+|||.|++-+-...+
T Consensus 129 ~---~~~~~~~~-~~~~~~~gs~----~~~~~~~e----~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 129 A---LPPEPAAG-RRLGFFPGST----IGNFTPEE----AVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred h---hhcccccC-CeEEEEeccc----ccCCCHHH----HHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 1 11111111 2333333321 23333221 235577888999999999986544333
No 117
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.53 E-value=2.8e-07 Score=86.26 Aligned_cols=101 Identities=21% Similarity=0.167 Sum_probs=68.9
Q ss_pred CCCeEEEECCCCCH----HHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC------------------
Q 021161 41 GVKRVVDLCAAPGS----WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI------------------ 92 (316)
Q Consensus 41 ~~~rVLDLcagPG~----wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i------------------ 92 (316)
++.+|+|+|||+|- ++..+++..... ...+.+|+|+|+++.+ .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~--------~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf 170 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKA--------REPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYF 170 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhc--------CCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhE
Confidence 45799999999995 666666655310 0124799999999831 11
Q ss_pred --------------CCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHccc
Q 021161 93 --------------EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLK 158 (316)
Q Consensus 93 --------------~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLk 158 (316)
..|++.++|+.+.. +..++||+|+|.... +-++. .....++....++|+
T Consensus 171 ~~~~~~~~v~~~ir~~V~F~~~dl~~~~--------~~~~~fD~I~crnvl-----~yf~~----~~~~~~l~~l~~~L~ 233 (264)
T smart00138 171 SRVEDKYRVKPELKERVRFAKHNLLAES--------PPLGDFDLIFCRNVL-----IYFDE----PTQRKLLNRFAEALK 233 (264)
T ss_pred EeCCCeEEEChHHhCcCEEeeccCCCCC--------CccCCCCEEEechhH-----HhCCH----HHHHHHHHHHHHHhC
Confidence 15788889998753 234689999995321 11222 223567888999999
Q ss_pred CCcEEEEE
Q 021161 159 EGGKFIAK 166 (316)
Q Consensus 159 pGG~fV~K 166 (316)
|||.|++-
T Consensus 234 pGG~L~lg 241 (264)
T smart00138 234 PGGYLFLG 241 (264)
T ss_pred CCeEEEEE
Confidence 99999984
No 118
>PLN03075 nicotianamine synthase; Provisional
Probab=98.52 E-value=8.3e-07 Score=84.37 Aligned_cols=134 Identities=16% Similarity=0.239 Sum_probs=87.7
Q ss_pred CCCeEEEECCCCCHHHHHHH-HHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------------CC-CCcEEEecCccChh
Q 021161 41 GVKRVVDLCAAPGSWSQVLS-RKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PI-EGVIQVQGDITNAR 106 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La-~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------------~i-~gV~~i~gDIt~~~ 106 (316)
+..+|+|+|||||+.|..+. ++.. ++++++++|+++.+ .+ .+|+|.++|+.+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~------------p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~ 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHL------------PTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcC------------CCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc
Confidence 67899999999998876654 3433 46899999999832 12 35999999998742
Q ss_pred hHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHH-----HHHH
Q 021161 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLY-----CQLK 181 (316)
Q Consensus 107 t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~-----~~l~ 181 (316)
. ..+.||+|+|+ + ++.++... -..++....+.|+|||.|++..-.|.. ..|| ..++
T Consensus 191 ~--------~l~~FDlVF~~-A-----Li~~dk~~----k~~vL~~l~~~LkPGG~Lvlr~~~G~r-~~LYp~v~~~~~~ 251 (296)
T PLN03075 191 E--------SLKEYDVVFLA-A-----LVGMDKEE----KVKVIEHLGKHMAPGALLMLRSAHGAR-AFLYPVVDPCDLR 251 (296)
T ss_pred c--------ccCCcCEEEEe-c-----cccccccc----HHHHHHHHHHhcCCCcEEEEecccchH-hhcCCCCChhhCC
Confidence 1 12579999998 3 22232110 135678889999999999997643321 1222 2233
Q ss_pred hcCCceEEecCCCCCCCCcceEEEEecc
Q 021161 182 LFFPVVTFAKPKSSRNSSIEAFAVCENY 209 (316)
Q Consensus 182 ~~F~~V~~~KP~sSR~~S~E~fvVc~gf 209 (316)
-|+...+++|... .-|+ -|+.+..
T Consensus 252 -gf~~~~~~~P~~~-v~Ns--vi~~r~~ 275 (296)
T PLN03075 252 -GFEVLSVFHPTDE-VINS--VIIARKP 275 (296)
T ss_pred -CeEEEEEECCCCC-ceee--EEEEEee
Confidence 5888888888654 3333 3444443
No 119
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=1.6e-06 Score=80.19 Aligned_cols=110 Identities=19% Similarity=0.169 Sum_probs=82.6
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCC-CcEEEecCccChh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNAR 106 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~-gV~~i~gDIt~~~ 106 (316)
+.+|.||+|.|.|+|..|.+|++.++ +.++|+.+|+.+.. .+. .|++..+|+++..
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg------------~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVG------------PEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhC------------CCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 36899999999999999999999886 56899999998731 133 3888889998752
Q ss_pred hHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhc-CC
Q 021161 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FP 185 (316)
Q Consensus 107 t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~-F~ 185 (316)
.+..||.|+.|+. |. ..++.-+..+|+|||.+++-.-..+........|+.. |-
T Consensus 160 ---------~~~~vDav~LDmp---------~P-------W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 160 ---------DEEDVDAVFLDLP---------DP-------WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred ---------cccccCEEEEcCC---------Ch-------HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 3458999999973 11 3567888999999999998554444455555556655 53
No 120
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.51 E-value=3.4e-07 Score=86.73 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-------------CCCCcEEEecCccChhh
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------PIEGVIQVQGDITNART 107 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-------------~i~gV~~i~gDIt~~~t 107 (316)
.+.+||||+|-+|+||.+++... ..+|++||++.-+ ....++++++|+.+.-
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG--------------A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l- 187 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG--------------AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFL- 187 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT--------------ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHH-
T ss_pred CCCceEEecCCCCHHHHHHHHCC--------------CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH-
Confidence 57899999999999999877532 3589999999732 1346889999998742
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCC-CHHHHHHHHHh
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK-DTSLLYCQLKL 182 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~-~~~~l~~~l~~ 182 (316)
+++. .+++||+||+|.+.-..+-.+.. +-....+..+.++|+|||.+++....+. ....+...++.
T Consensus 188 -~~~~---~~~~fD~IIlDPPsF~k~~~~~~-----~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~ 254 (286)
T PF10672_consen 188 -KRLK---KGGRFDLIILDPPSFAKSKFDLE-----RDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAE 254 (286)
T ss_dssp -HHHH---HTT-EEEEEE--SSEESSTCEHH-----HHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHH
T ss_pred -HHHh---cCCCCCEEEECCCCCCCCHHHHH-----HHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHH
Confidence 2232 23589999999754334333221 1224456788999999999987655433 34455555543
No 121
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.50 E-value=7.6e-07 Score=67.48 Aligned_cols=92 Identities=21% Similarity=0.278 Sum_probs=67.0
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhHHHHH
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~~~I~ 112 (316)
+++|+|||+|.++..+++ . ...+++++|+++.. ....+.++++|+.+...
T Consensus 1 ~ildig~G~G~~~~~~~~-~-------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 61 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-------------PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP----- 61 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-------------CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-----
Confidence 589999999999998877 2 24799999998742 12457788899887542
Q ss_pred hhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 113 ~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
....++|+|++++..... .......+..+..+|++||.+++.
T Consensus 62 --~~~~~~d~i~~~~~~~~~----------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 62 --EADESFDVIISDPPLHHL----------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --ccCCceEEEEEccceeeh----------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 134689999998753221 122345677888899999999874
No 122
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.50 E-value=1.8e-07 Score=84.85 Aligned_cols=92 Identities=21% Similarity=0.329 Sum_probs=66.4
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t 107 (316)
++++++|||+|||+|-.+.+|++..+ +.++|++||..+.. .+.+|.++.||...-.
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg------------~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~- 136 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVG------------PVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW- 136 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHS------------TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT-
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcC------------ccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc-
Confidence 58999999999999999999999885 45789999999831 2568999999986532
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
-...+||.|++.++.. ... ......|++||.+|+=+
T Consensus 137 -------~~~apfD~I~v~~a~~-----~ip------------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 137 -------PEEAPFDRIIVTAAVP-----EIP------------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp -------GGG-SEEEEEESSBBS-----S--------------HHHHHTEEEEEEEEEEE
T ss_pred -------ccCCCcCEEEEeeccc-----hHH------------HHHHHhcCCCcEEEEEE
Confidence 1235899999987542 122 13467899999999944
No 123
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.49 E-value=4.1e-07 Score=81.16 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=57.3
Q ss_pred CCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC----CCCcEEEecCccChhhHHHHH
Q 021161 37 NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 37 ~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~----i~gV~~i~gDIt~~~t~~~I~ 112 (316)
.+++++.||||||||.|..-.+|.+.. ++...|||+.+..- -.|+.++|+|+.+- +
T Consensus 9 ~~I~pgsrVLDLGCGdG~LL~~L~~~k--------------~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~g------L 68 (193)
T PF07021_consen 9 EWIEPGSRVLDLGCGDGELLAYLKDEK--------------QVDGYGVEIDPDNVAACVARGVSVIQGDLDEG------L 68 (193)
T ss_pred HHcCCCCEEEecCCCchHHHHHHHHhc--------------CCeEEEEecCHHHHHHHHHcCCCEEECCHHHh------H
Confidence 367899999999999999888887653 47899999998531 35899999999863 3
Q ss_pred hhcCCccccEEEeC
Q 021161 113 RHFDGCKADLVVCD 126 (316)
Q Consensus 113 ~~~~~~~~DlVvsD 126 (316)
..|++++||.||..
T Consensus 69 ~~f~d~sFD~VIls 82 (193)
T PF07021_consen 69 ADFPDQSFDYVILS 82 (193)
T ss_pred hhCCCCCccEEehH
Confidence 46888999999975
No 124
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.49 E-value=6.3e-07 Score=79.34 Aligned_cols=128 Identities=23% Similarity=0.267 Sum_probs=86.7
Q ss_pred HcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCC-cEEEecCc
Q 021161 35 EFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG-VIQVQGDI 102 (316)
Q Consensus 35 ~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~g-V~~i~gDI 102 (316)
.|++-+...+|||||||-|.+..-|++.-- ..+.+|||.++.+ ..++ |++.|.||
T Consensus 61 ~~rv~~~A~~VlDLGtGNG~~L~~L~~egf-------------~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI 127 (227)
T KOG1271|consen 61 ISRVSKQADRVLDLGTGNGHLLFQLAKEGF-------------QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDI 127 (227)
T ss_pred hhhhcccccceeeccCCchHHHHHHHHhcC-------------CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeec
Confidence 344444555999999999998887776532 3468999999843 1344 88999999
Q ss_pred cChhhHHHHHhhcCCccccEEEeCCCCCCCCCC-CccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHH
Q 021161 103 TNARTAEVVIRHFDGCKADLVVCDGAPDVTGLH-DMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181 (316)
Q Consensus 103 t~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~-~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~ 181 (316)
+++. +..++||+|+--|..|..+++ +.-.. .+ ..-+...-++|+|||.||+.- -.....+|...+.
T Consensus 128 ~~~~--------~~~~qfdlvlDKGT~DAisLs~d~~~~---r~-~~Y~d~v~~ll~~~gifvItS-CN~T~dELv~~f~ 194 (227)
T KOG1271|consen 128 TDPD--------FLSGQFDLVLDKGTLDAISLSPDGPVG---RL-VVYLDSVEKLLSPGGIFVITS-CNFTKDELVEEFE 194 (227)
T ss_pred cCCc--------ccccceeEEeecCceeeeecCCCCccc---ce-eeehhhHhhccCCCcEEEEEe-cCccHHHHHHHHh
Confidence 9974 345789999988877766665 21110 00 111445678999999999843 2345677888777
Q ss_pred hc-CCceE
Q 021161 182 LF-FPVVT 188 (316)
Q Consensus 182 ~~-F~~V~ 188 (316)
.+ |+.+.
T Consensus 195 ~~~f~~~~ 202 (227)
T KOG1271|consen 195 NFNFEYLS 202 (227)
T ss_pred cCCeEEEE
Confidence 65 54443
No 125
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.48 E-value=5.7e-07 Score=85.60 Aligned_cols=108 Identities=25% Similarity=0.270 Sum_probs=70.7
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC--------CCCc--EE-EecCccChhh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEGV--IQ-VQGDITNART 107 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~--------i~gV--~~-i~gDIt~~~t 107 (316)
..++.+|||+|||+|..+.+.++. + ..+|+|+|+.|.+- +.|+ .+ +. ...+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-G-------------A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-~~~~--- 220 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-G-------------AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-LSED--- 220 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-T-------------BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES-CTSC---
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-C-------------CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE-Eecc---
Confidence 467899999999999999777664 3 35899999999641 2222 11 11 1111
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhcCC
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFP 185 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~F~ 185 (316)
....+||+|++|.- ...+...+....++|+|||.|++.=+-......+...++.-|+
T Consensus 221 -------~~~~~~dlvvANI~--------------~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~ 277 (295)
T PF06325_consen 221 -------LVEGKFDLVVANIL--------------ADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFE 277 (295)
T ss_dssp -------TCCS-EEEEEEES---------------HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEE
T ss_pred -------cccccCCEEEECCC--------------HHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCE
Confidence 12378999999852 2233455666788999999999975555667777777765444
No 126
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.47 E-value=3.8e-07 Score=81.67 Aligned_cols=101 Identities=21% Similarity=0.258 Sum_probs=68.2
Q ss_pred HHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CCC--CcEEEecCcc
Q 021161 34 EEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIE--GVIQVQGDIT 103 (316)
Q Consensus 34 ~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i~--gV~~i~gDIt 103 (316)
+..+++++ .++||||||.|.-+.+|+++. ..|+|+|.++.+ .-. .|+..+.|+.
T Consensus 24 ~a~~~~~~-g~~LDlgcG~GRNalyLA~~G---------------~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~ 87 (192)
T PF03848_consen 24 EAVPLLKP-GKALDLGCGEGRNALYLASQG---------------FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLN 87 (192)
T ss_dssp HHCTTS-S-SEEEEES-TTSHHHHHHHHTT----------------EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGC
T ss_pred HHHhhcCC-CcEEEcCCCCcHHHHHHHHCC---------------CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecch
Confidence 34555654 599999999999999999864 589999999853 112 2677888988
Q ss_pred ChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEc
Q 021161 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (316)
Q Consensus 104 ~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 168 (316)
+.. ++ +.+|+|+|..... +++.++....+......++|||.+++-.|
T Consensus 88 ~~~--------~~-~~yD~I~st~v~~---------fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 88 DFD--------FP-EEYDFIVSTVVFM---------FLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp CBS---------T-TTEEEEEEESSGG---------GS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hcc--------cc-CCcCEEEEEEEec---------cCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 753 33 5799999865321 12222334456677889999999988655
No 127
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=98.47 E-value=4.3e-06 Score=86.86 Aligned_cols=171 Identities=18% Similarity=0.160 Sum_probs=116.1
Q ss_pred CchhhhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC--------CC-
Q 021161 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------AP- 91 (316)
Q Consensus 21 ~raRsa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~--------~~- 91 (316)
|-.=|-|||-.|...+++-- .-+|=.|=|.||.+..+.+..+ ..+++=--|.++ .|
T Consensus 304 ~ATGAHYKlRsIL~~~~i~~--~d~l~~GDGSGGita~lLR~~p-------------~sr~iFNSLL~~~~~~l~Gs~P~ 368 (675)
T PF14314_consen 304 LATGAHYKLRSILKNLNIKY--RDALCGGDGSGGITACLLRMNP-------------TSRGIFNSLLELDGSDLRGSHPS 368 (675)
T ss_pred ccccchhhHHHHHHhcCCCc--ceeEEEecCchHHHHHHHHhCc-------------ccceeeeccccccCCCCCCCCCC
Confidence 44567799999999998643 4567788899999999988764 233332222221 11
Q ss_pred -------CCC----------cEEEecCccChhhHHHHHhhc--CCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHH
Q 021161 92 -------IEG----------VIQVQGDITNARTAEVVIRHF--DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTV 152 (316)
Q Consensus 92 -------i~g----------V~~i~gDIt~~~t~~~I~~~~--~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~ 152 (316)
+.+ +-..--|+++..|=+...+.- .+-++|||++|+- | .|.....++-...-..
T Consensus 369 PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~TW~YF~~l~~~~~~~idLiv~DmE--V-----~d~~~~~kIe~~l~~~ 441 (675)
T PF14314_consen 369 PPSAIMALGNDKSRCVNLDTCWEHPSDLSDPETWKYFVSLKKQHNLSIDLIVMDME--V-----RDDSIIRKIEDNLRDY 441 (675)
T ss_pred CcHHHhccCcccceeecchhhhcCccccCCccHHHHHHHHHhhcCCcccEEEEece--e-----cChHHHHHHHHHHHHH
Confidence 111 111234888887644433211 2468999999982 3 3443333333333456
Q ss_pred HHHcccCCcEEEEEEccCC---CHHHHHHHHHhcCCceEEecCCCCCCCCcceEEEEecccCCC
Q 021161 153 VTHVLKEGGKFIAKIFRGK---DTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPE 213 (316)
Q Consensus 153 a~~vLkpGG~fV~Kif~~~---~~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~fvVc~gf~~p~ 213 (316)
+..+|.++|+++.|+|-.. ....++..+..+|+.|.++.+.-|-..++|.|+||++++...
T Consensus 442 ~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~~F~~V~l~qT~~SSs~TSEVYlv~~~~~~~~ 505 (675)
T PF14314_consen 442 VHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGRYFKSVELVQTQFSSSFTSEVYLVFQKLKKFP 505 (675)
T ss_pred HHHhcCCCcEEEEehhHhhhhcchhhHHHHHHhhcCceEEEECCCCCCCceEEEEEEecccCCC
Confidence 6678999999999998642 233577889999999999999999999999999999998755
No 128
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.46 E-value=6.7e-07 Score=84.89 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=71.3
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC----------C-CCcEEEecCccChhh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------I-EGVIQVQGDITNART 107 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~----------i-~gV~~i~gDIt~~~t 107 (316)
++++.+|||+|||+|.++..++++.+ ..+++++|+.++.. + .+|+++.+|+.+..
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p-------------~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~- 212 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFP-------------ELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKES- 212 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCC-------------CCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCC-
Confidence 46778999999999999999999873 57899999854321 2 35889999987532
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEc
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 168 (316)
++ .+|+|++.. .+|+++.. .+..+|..+.+.|+|||+|++--+
T Consensus 213 -------~~--~~D~v~~~~-----~lh~~~~~----~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 213 -------YP--EADAVLFCR-----ILYSANEQ----LSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred -------CC--CCCEEEeEh-----hhhcCChH----HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 22 379988643 23544432 234568889999999999988643
No 129
>PRK06202 hypothetical protein; Provisional
Probab=98.44 E-value=1.8e-06 Score=78.63 Aligned_cols=99 Identities=19% Similarity=0.167 Sum_probs=65.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CCCCcEEEecCccChhhHHHH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i~gV~~i~gDIt~~~t~~~I 111 (316)
.++.+|||||||+|.++..|++.... .+.+.+|+|+|+++.+ ...++.+..+|.....
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~---------~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~----- 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARR---------DGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELV----- 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHh---------CCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEeccccc-----
Confidence 46689999999999999999876531 1134699999999842 1246666666554432
Q ss_pred HhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 112 ~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
+..++||+|+|.... |..... + ...++..+.++++ |+.++.
T Consensus 125 ---~~~~~fD~V~~~~~l-----hh~~d~---~-~~~~l~~~~r~~~-~~~~i~ 165 (232)
T PRK06202 125 ---AEGERFDVVTSNHFL-----HHLDDA---E-VVRLLADSAALAR-RLVLHN 165 (232)
T ss_pred ---ccCCCccEEEECCee-----ecCChH---H-HHHHHHHHHHhcC-eeEEEe
Confidence 234689999998642 333321 1 2356777888887 444444
No 130
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.43 E-value=4.6e-07 Score=82.28 Aligned_cols=98 Identities=14% Similarity=0.067 Sum_probs=69.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CC---------------CCcE
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI---------------EGVI 96 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i---------------~gV~ 96 (316)
.++.+|||+|||.|..+.+|+++. ..|+|||+++.+ .+ .+|+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G---------------~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQG---------------HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCC---------------CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 467799999999999999999753 589999999852 11 2577
Q ss_pred EEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEc
Q 021161 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (316)
Q Consensus 97 ~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 168 (316)
++++|+++... ...++||+|+-.+.. +.+.. .+-...+....++|||||++++-.|
T Consensus 98 ~~~~D~~~~~~-------~~~~~fD~i~D~~~~-----~~l~~----~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 98 IFCGDFFALTA-------ADLGPVDAVYDRAAL-----IALPE----EMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred EEEccCCCCCc-------ccCCCcCEEEechhh-----ccCCH----HHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 88999987541 012468999865432 11222 1223457788999999998776555
No 131
>PLN02366 spermidine synthase
Probab=98.43 E-value=3.8e-06 Score=80.50 Aligned_cols=142 Identities=18% Similarity=0.215 Sum_probs=91.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------C-------CCCcEEEecCccC
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P-------IEGVIQVQGDITN 104 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~-------i~gV~~i~gDIt~ 104 (316)
.+..+||++|+|.|+.+..++++- ...+|+.||+.+.. + -++++++.+|...
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-------------~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~ 156 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-------------SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE 156 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-------------CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH
Confidence 467899999999999998887652 23589999999841 1 2478889999764
Q ss_pred hhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHH-HHHHHHHHHHcccCCcEEEEEE---c-cCCCHHHHHHH
Q 021161 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKI---F-RGKDTSLLYCQ 179 (316)
Q Consensus 105 ~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L-~~aaL~~a~~vLkpGG~fV~Ki---f-~~~~~~~l~~~ 179 (316)
. ++...+++||+|++|.... .|. . ..| ....+..+.++|+|||.|+... | .......++..
T Consensus 157 ~------l~~~~~~~yDvIi~D~~dp-~~~---~----~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~t 222 (308)
T PLN02366 157 F------LKNAPEGTYDAIIVDSSDP-VGP---A----QELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAI 222 (308)
T ss_pred H------HhhccCCCCCEEEEcCCCC-CCc---h----hhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHH
Confidence 2 1122346899999997422 221 1 112 2455778899999999998742 2 12234567777
Q ss_pred HHhcC-CceEEec-CCCCCCCCcceEEEEec
Q 021161 180 LKLFF-PVVTFAK-PKSSRNSSIEAFAVCEN 208 (316)
Q Consensus 180 l~~~F-~~V~~~K-P~sSR~~S~E~fvVc~g 208 (316)
++..| ..|..+. ...+-.+-.=.|++|..
T Consensus 223 l~~~F~~~v~~~~~~vPsy~~g~w~f~~as~ 253 (308)
T PLN02366 223 CRETFKGSVNYAWTTVPTYPSGVIGFVLCSK 253 (308)
T ss_pred HHHHCCCceeEEEecCCCcCCCceEEEEEEC
Confidence 88888 4664421 22223223345788754
No 132
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.36 E-value=1.8e-06 Score=79.37 Aligned_cols=99 Identities=16% Similarity=0.154 Sum_probs=71.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CC-CCcEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i-~gV~~i~gDIt~~~t 107 (316)
.+..+|||+|||+|.-+..+++.++ ++++|+++|+++.. .+ ..+++++||+.+.
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~------------~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-- 132 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALP------------EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-- 132 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--
Confidence 4678999999999998888888764 35799999999842 12 3578899998752
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
+..+......++||+|+.|+.. +.| ...+..+.++|+|||.+++-
T Consensus 133 L~~l~~~~~~~~fD~VfiDa~k--------~~y------~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 133 LDQLLNNDPKPEFDFAFVDADK--------PNY------VHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHHHHhCCCCCCCCEEEECCCH--------HHH------HHHHHHHHHhcCCCeEEEEE
Confidence 3333222223689999999742 222 23466778999999998863
No 133
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.36 E-value=5.8e-06 Score=77.45 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=89.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------C------CCCcEEEecCccC
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P------IEGVIQVQGDITN 104 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~------i~gV~~i~gDIt~ 104 (316)
.+..+||+||||.|+.+..+.++.. ..+|++||+.+.. . .++++++.+|...
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~-------------~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~ 137 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKS-------------VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFK 137 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCC-------------cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHH
Confidence 3456999999999999988876541 3589999999742 0 2356666666643
Q ss_pred hhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHH-HHHHHHHHHHcccCCcEEEEEEccCC----CHHHHHHH
Q 021161 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRGK----DTSLLYCQ 179 (316)
Q Consensus 105 ~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L-~~aaL~~a~~vLkpGG~fV~Kif~~~----~~~~l~~~ 179 (316)
. + +.. .++||+|++|... ..+. .. .| ....+..+.++|+|||.|++..-... ....++..
T Consensus 138 ~-----l-~~~-~~~yDvIi~D~~~-~~~~---~~----~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~t 202 (270)
T TIGR00417 138 F-----L-ADT-ENTFDVIIVDSTD-PVGP---AE----TLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRD 202 (270)
T ss_pred H-----H-HhC-CCCccEEEEeCCC-CCCc---cc----chhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHH
Confidence 1 1 112 3689999999642 1111 10 11 24567788899999999998532211 22345566
Q ss_pred HHhcCCceEEecC-CCCCCCCcceEEEEec
Q 021161 180 LKLFFPVVTFAKP-KSSRNSSIEAFAVCEN 208 (316)
Q Consensus 180 l~~~F~~V~~~KP-~sSR~~S~E~fvVc~g 208 (316)
++..|..|..+.. ..+-.+..-.|++|..
T Consensus 203 l~~~F~~v~~~~~~vp~~~~g~~~~~~as~ 232 (270)
T TIGR00417 203 VKEAFPITEYYTANIPTYPSGLWTFTIGSK 232 (270)
T ss_pred HHHHCCCeEEEEEEcCccccchhEEEEEEC
Confidence 7788998876542 2233233346888865
No 134
>PLN02672 methionine S-methyltransferase
Probab=98.31 E-value=6.9e-06 Score=89.73 Aligned_cols=131 Identities=18% Similarity=0.137 Sum_probs=84.5
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-----------C----------------CC
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------I----------------EG 94 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-----------i----------------~g 94 (316)
+.+|||||||+|..+..++++.+ ..+|+|+|+++.+- + .+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-------------~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~r 185 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-------------PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDR 185 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCccccccccccccccccccc
Confidence 46899999999999999998863 46999999999520 1 25
Q ss_pred cEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCC-CCcc------------------H--------HHHHHHHH
Q 021161 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL-HDMD------------------E--------FVQSQLIL 147 (316)
Q Consensus 95 V~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~-~~~d------------------e--------~~~~~L~~ 147 (316)
|+++++|+.+.. . . .+.+||+||||.+--.++. ..++ + .--..+..
T Consensus 186 V~f~~sDl~~~~-----~-~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr 258 (1082)
T PLN02672 186 VEFYESDLLGYC-----R-D-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIA 258 (1082)
T ss_pred EEEEECchhhhc-----c-c-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHH
Confidence 889999997631 0 0 1236999999963100110 0000 0 01234557
Q ss_pred HHHHHHHHcccCCcEEEEEEccCCCHHHHH-HHHHh-cCCceEEecCC
Q 021161 148 AGLTVVTHVLKEGGKFIAKIFRGKDTSLLY-CQLKL-FFPVVTFAKPK 193 (316)
Q Consensus 148 aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~-~~l~~-~F~~V~~~KP~ 193 (316)
..+..+..+|+|||.+++.+- ...-..+. ..++. -|+.+.+.+-+
T Consensus 259 ~i~~~a~~~L~pgG~l~lEiG-~~q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 259 RAVEEGISVIKPMGIMIFNMG-GRPGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred HHHHHHHHhccCCCEEEEEEC-ccHHHHHHHHHHHHCCCCeeEEeeeh
Confidence 788899999999999998763 22223333 24433 37776666554
No 135
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.30 E-value=3.8e-06 Score=72.99 Aligned_cols=93 Identities=12% Similarity=0.190 Sum_probs=65.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------CCCCcEEEecCccChhhHHH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~i~gV~~i~gDIt~~~t~~~ 110 (316)
.++.+|||+|||+|.++..++++. .+|+++|+++.+ ...+++++++|+.+..
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~---------------~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~---- 72 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA---------------ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD---- 72 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC---------------CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC----
Confidence 466799999999999999998762 589999999832 1347889999998753
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
+.+..+|+|++|..... ..+++...+.. ..+.++|.|++..
T Consensus 73 ----~~~~~~d~vi~n~Py~~----------~~~~i~~~l~~--~~~~~~~~l~~q~ 113 (169)
T smart00650 73 ----LPKLQPYKVVGNLPYNI----------STPILFKLLEE--PPAFRDAVLMVQK 113 (169)
T ss_pred ----ccccCCCEEEECCCccc----------HHHHHHHHHhc--CCCcceEEEEEEH
Confidence 23346999999864321 12333333332 2355888888764
No 136
>PRK01581 speE spermidine synthase; Validated
Probab=98.29 E-value=1.6e-05 Score=77.71 Aligned_cols=141 Identities=17% Similarity=0.062 Sum_probs=86.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----C-------------CCCcEEEecC
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----P-------------IEGVIQVQGD 101 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----~-------------i~gV~~i~gD 101 (316)
.+..+||+||+|.|+....+.+.. +..+|++||+.+.. . .++++++.+|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-------------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~D 215 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-------------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCD 215 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-------------CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECc
Confidence 345799999999999776666532 24689999999831 1 2467888888
Q ss_pred ccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHH-HHHHHHHHHHcccCCcEEEEEEccCCCH----HHH
Q 021161 102 ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRGKDT----SLL 176 (316)
Q Consensus 102 It~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L-~~aaL~~a~~vLkpGG~fV~Kif~~~~~----~~l 176 (316)
.... + .. ..++||+|++|. ++..+... ..| ....+..+.+.|+|||.||+..-..... ..+
T Consensus 216 a~~f-----L-~~-~~~~YDVIIvDl-~DP~~~~~------~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i 281 (374)
T PRK01581 216 AKEF-----L-SS-PSSLYDVIIIDF-PDPATELL------STLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSI 281 (374)
T ss_pred HHHH-----H-Hh-cCCCccEEEEcC-CCccccch------hhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHH
Confidence 7752 1 11 235899999995 33322111 122 2456788899999999999863222111 234
Q ss_pred HHHHHhcCCceEEecCC-CCCCCCcceEEEEec
Q 021161 177 YCQLKLFFPVVTFAKPK-SSRNSSIEAFAVCEN 208 (316)
Q Consensus 177 ~~~l~~~F~~V~~~KP~-sSR~~S~E~fvVc~g 208 (316)
...++..|..+..+.-. .|= .+.=.|++|..
T Consensus 282 ~~tL~~af~~v~~y~t~vPsy-g~~WgF~~as~ 313 (374)
T PRK01581 282 GNTIEHAGLTVKSYHTIVPSF-GTDWGFHIAAN 313 (374)
T ss_pred HHHHHHhCCceEEEEEecCCC-CCceEEEEEeC
Confidence 55666667665544321 111 22234777754
No 137
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.27 E-value=1.7e-06 Score=80.44 Aligned_cols=90 Identities=24% Similarity=0.327 Sum_probs=61.3
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------C-CCC-----cEEEecCccC
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEG-----VIQVQGDITN 104 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~-i~g-----V~~i~gDIt~ 104 (316)
|++|||+|||.|-.|+.|++. +..|+|||+.+++ | ..+ +.+...|...
T Consensus 90 g~~ilDvGCGgGLLSepLArl---------------ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~ 154 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---------------GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG 154 (282)
T ss_pred CceEEEeccCccccchhhHhh---------------CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh
Confidence 488999999999999999974 2689999999842 1 122 3333344333
Q ss_pred hhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEc
Q 021161 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (316)
Q Consensus 105 ~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 168 (316)
+. ++||.|+|-... .|..| ....+.....+|||||.+++.+.
T Consensus 155 ----------~~-~~fDaVvcsevl----eHV~d-------p~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 155 ----------LT-GKFDAVVCSEVL----EHVKD-------PQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred ----------cc-cccceeeeHHHH----HHHhC-------HHHHHHHHHHHhCCCCceEeeeh
Confidence 22 469999996321 01111 23457788899999999998654
No 138
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.26 E-value=4.5e-06 Score=77.60 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=78.1
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CC-CCcEEEecCccChh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i-~gV~~i~gDIt~~~ 106 (316)
+.+|.+||+-|.|.|++|.+|++.++ +.++|+..|..+.. .+ .+|++.++||....
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~------------p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVG------------PTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHT------------TTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhC------------CCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence 47999999999999999999999986 57899999998731 23 36889999998642
Q ss_pred hHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcc-cCCcEEEEEEccCCCHHHHHHHHHhc-C
Q 021161 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVL-KEGGKFIAKIFRGKDTSLLYCQLKLF-F 184 (316)
Q Consensus 107 t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vL-kpGG~fV~Kif~~~~~~~l~~~l~~~-F 184 (316)
. .+.+ ...+|.|+.|..-. ..++.-+.++| |+||.+++-.-.-+.+..+...|+.. |
T Consensus 106 ~----~~~~-~~~~DavfLDlp~P----------------w~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 106 F----DEEL-ESDFDAVFLDLPDP----------------WEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp -----STT--TTSEEEEEEESSSG----------------GGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred c----cccc-cCcccEEEEeCCCH----------------HHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence 1 0011 25799999997311 13467788999 89999988543223444455556553 6
Q ss_pred CceEE
Q 021161 185 PVVTF 189 (316)
Q Consensus 185 ~~V~~ 189 (316)
..+.+
T Consensus 165 ~~i~~ 169 (247)
T PF08704_consen 165 TDIET 169 (247)
T ss_dssp EEEEE
T ss_pred eeeEE
Confidence 55544
No 139
>PRK03612 spermidine synthase; Provisional
Probab=98.25 E-value=5.3e-06 Score=84.78 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=77.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----C-------------CCCcEEEecC
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----P-------------IEGVIQVQGD 101 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----~-------------i~gV~~i~gD 101 (316)
++..+|||+|||.|.++..+.++ + ...+|++||+++.. . .++++++.+|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~------------~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~D 362 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-P------------DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDD 362 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-C------------CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEECh
Confidence 45689999999999999888764 2 12599999998731 1 1568888888
Q ss_pred ccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHH-HHHHHHHHHHcccCCcEEEEEEc----cCCCHHHH
Q 021161 102 ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIF----RGKDTSLL 176 (316)
Q Consensus 102 It~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L-~~aaL~~a~~vLkpGG~fV~Kif----~~~~~~~l 176 (316)
..+. .... .++||+|++|.. +..+ .. ..+| ....+..+.++|+|||.|++..- +......+
T Consensus 363 a~~~------l~~~-~~~fDvIi~D~~-~~~~---~~---~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i 428 (521)
T PRK03612 363 AFNW------LRKL-AEKFDVIIVDLP-DPSN---PA---LGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSI 428 (521)
T ss_pred HHHH------HHhC-CCCCCEEEEeCC-CCCC---cc---hhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHH
Confidence 8652 1122 368999999953 2211 00 0111 13456778899999999998542 22234456
Q ss_pred HHHHHhc-C
Q 021161 177 YCQLKLF-F 184 (316)
Q Consensus 177 ~~~l~~~-F 184 (316)
...++.. |
T Consensus 429 ~~~l~~~gf 437 (521)
T PRK03612 429 EATLEAAGL 437 (521)
T ss_pred HHHHHHcCC
Confidence 6667666 6
No 140
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.23 E-value=9.8e-06 Score=73.52 Aligned_cols=97 Identities=18% Similarity=0.099 Sum_probs=66.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC----------CCCcEEEecCccChhhHH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAE 109 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~----------i~gV~~i~gDIt~~~t~~ 109 (316)
.++.+|||||||+|.++..+++.. .+|+++|+++... -..+.+.++|+.+..
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~---------------~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 108 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLG---------------ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELA--- 108 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC---------------CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhh---
Confidence 367899999999999998887642 5799999997420 113566667665431
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
. ..+++||+|++....... .+. ...+..+.++|+|||.|++..+.
T Consensus 109 ---~-~~~~~fD~Ii~~~~l~~~----~~~-------~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 109 ---A-EHPGQFDVVTCMEMLEHV----PDP-------ASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ---h-hcCCCccEEEEhhHhhcc----CCH-------HHHHHHHHHHcCCCcEEEEEecC
Confidence 1 134689999996432221 111 24577889999999999986653
No 141
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.21 E-value=9.1e-06 Score=73.01 Aligned_cols=96 Identities=20% Similarity=0.179 Sum_probs=65.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~~ 109 (316)
.+.+|||+|||+|.++..+++.. .+++++|+++.. .+.++++.++|+.+...
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---------------~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-- 107 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---------------ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE-- 107 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---------------CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc--
Confidence 47799999999999999887642 469999998731 12246777777654321
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
...++||+|++....... .+ ....+..+.++|++||.+++....
T Consensus 108 -----~~~~~~D~i~~~~~l~~~----~~-------~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 108 -----KGAKSFDVVTCMEVLEHV----PD-------PQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred -----CCCCCccEEEehhHHHhC----CC-------HHHHHHHHHHhcCCCcEEEEEecC
Confidence 113689999997532211 11 134577888999999999886553
No 142
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.21 E-value=1.3e-05 Score=72.25 Aligned_cols=99 Identities=13% Similarity=0.040 Sum_probs=64.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
.++.+|||||||+|.++..++.+. ..+|++||+++.+ .+.++.++++|+.+.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~--------------a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~--- 114 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY--------------AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF--- 114 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC--------------CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH---
Confidence 356799999999999998654443 2589999999842 245688899998642
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
+ ... ..+||+|++|.+. -.|+ .+ .+...|.. ..+|+|+|.+++....
T Consensus 115 --l-~~~-~~~fDlV~~DPPy-~~g~---~~-----~~l~~l~~-~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 115 --L-AQP-GTPHNVVFVDPPF-RKGL---LE-----ETINLLED-NGWLADEALIYVESEV 161 (199)
T ss_pred --H-hhc-CCCceEEEECCCC-CCCh---HH-----HHHHHHHH-CCCcCCCcEEEEEecC
Confidence 1 112 3469999999742 2332 11 11222222 3468999988887654
No 143
>PLN02476 O-methyltransferase
Probab=98.20 E-value=1.2e-05 Score=76.04 Aligned_cols=99 Identities=15% Similarity=0.231 Sum_probs=72.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CC-CCcEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i-~gV~~i~gDIt~~~t 107 (316)
.+.++|||+|++.|..+.++++.++ ++++|+++|..+.. .+ ..|+++.||..+ +
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~------------~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e--~ 182 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLP------------ESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE--S 182 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH--H
Confidence 4678999999999999999998775 45789999999842 23 368888999865 2
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
++.+...-..++||+|+.|+.. ..| ...+..+.++|+|||.+|+-
T Consensus 183 L~~l~~~~~~~~FD~VFIDa~K--------~~Y------~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDADK--------RMY------QDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHHHHhcccCCCCCEEEECCCH--------HHH------HHHHHHHHHhcCCCcEEEEe
Confidence 3332211123589999999742 222 34467788999999999974
No 144
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.1e-05 Score=72.90 Aligned_cols=89 Identities=21% Similarity=0.305 Sum_probs=69.2
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-----------CCCCCcEEEecCccChhh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNART 107 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-----------~~i~gV~~i~gDIt~~~t 107 (316)
++++++||++|||+|--+.+|++.. ++|++||+.+. ..+.||++++||-..-.
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~---------------~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~- 133 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLV---------------GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW- 133 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHh---------------CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC-
Confidence 4789999999999999999999876 49999999873 13678999999987632
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
-...+||.|+..++.+. +.+ ....-||+||.+|+=+
T Consensus 134 -------~~~aPyD~I~Vtaaa~~-----vP~------------~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 134 -------PEEAPYDRIIVTAAAPE-----VPE------------ALLDQLKPGGRLVIPV 169 (209)
T ss_pred -------CCCCCcCEEEEeeccCC-----CCH------------HHHHhcccCCEEEEEE
Confidence 23479999999886432 221 2356899999999855
No 145
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.15 E-value=2.4e-05 Score=71.86 Aligned_cols=121 Identities=22% Similarity=0.362 Sum_probs=84.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-------C----C--CCcEEEecCccChhh
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------P----I--EGVIQVQGDITNART 107 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-------~----i--~gV~~i~gDIt~~~t 107 (316)
.|.+|||-|.|=|-.+....++. ..+|+.|+.+|.. | + .++..+.||+.+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rG--------------A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e--- 196 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERG--------------AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE--- 196 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcC--------------CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH---
Confidence 48999999999999988877764 2388888887741 2 1 257899999875
Q ss_pred HHHHHhhcCCccccEEEeCCC-CCCCCCCCccHHHHHHH-HHHHHHHHHHcccCCcEEEEEE------ccCCCHH-HHHH
Q 021161 108 AEVVIRHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKI------FRGKDTS-LLYC 178 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDga-pdvtG~~~~de~~~~~L-~~aaL~~a~~vLkpGG~fV~Ki------f~~~~~~-~l~~ 178 (316)
+.+.|++++||.|+.|.+ +.-.| +| .+.......++|||||.++--+ ++|.+.. -+..
T Consensus 197 ---~V~~~~D~sfDaIiHDPPRfS~Ag----------eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~ 263 (287)
T COG2521 197 ---VVKDFDDESFDAIIHDPPRFSLAG----------ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAE 263 (287)
T ss_pred ---HHhcCCccccceEeeCCCccchhh----------hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHH
Confidence 456788899999999963 11111 12 1455678899999999998543 4455543 4666
Q ss_pred HHHhc-CCceEEec
Q 021161 179 QLKLF-FPVVTFAK 191 (316)
Q Consensus 179 ~l~~~-F~~V~~~K 191 (316)
.|++. |..|...+
T Consensus 264 RLr~vGF~~v~~~~ 277 (287)
T COG2521 264 RLRRVGFEVVKKVR 277 (287)
T ss_pred HHHhcCceeeeeeh
Confidence 67664 77666543
No 146
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.15 E-value=3.7e-06 Score=74.55 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=52.9
Q ss_pred CcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHh
Q 021161 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 38 ~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~ 113 (316)
.+.++.+|||+|||+|.++..+++.. ...++|+|+++.+ ...++.++++|+.+.- .
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~--------------~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l------~ 69 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEK--------------QVRGYGIEIDQDGVLACVARGVNVIQGDLDEGL------E 69 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhcc--------------CCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcc------c
Confidence 34678899999999999999887654 2567999998732 2357888899986520 0
Q ss_pred hcCCccccEEEeCCCC
Q 021161 114 HFDGCKADLVVCDGAP 129 (316)
Q Consensus 114 ~~~~~~~DlVvsDgap 129 (316)
.+..++||+|+|..+.
T Consensus 70 ~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 70 AFPDKSFDYVILSQTL 85 (194)
T ss_pred ccCCCCcCEEEEhhHh
Confidence 1345789999998643
No 147
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.12 E-value=4.5e-05 Score=71.54 Aligned_cols=140 Identities=19% Similarity=0.188 Sum_probs=83.8
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-----------CCC-cEEE----ecCccCh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEG-VIQV----QGDITNA 105 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-----------i~g-V~~i----~gDIt~~ 105 (316)
+..++|||||+|..|..+++.++ .++|+|||.++.+- +.| +..+ ++|..++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~-------------~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~ 215 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLP-------------QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDE 215 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCC-------------CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccc
Confidence 45899999999999999999885 58999999999641 222 3333 4454443
Q ss_pred hhHHHHHhhcCCccccEEEeCCCCCCCC--CCCccHHH--------------HHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 106 RTAEVVIRHFDGCKADLVVCDGAPDVTG--LHDMDEFV--------------QSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 106 ~t~~~I~~~~~~~~~DlVvsDgapdvtG--~~~~de~~--------------~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
- .+..++.|+++||.+ .+.- +...+..+ -...+.-.+..|.++|+|||.+.+.+-.
T Consensus 216 ~-------~l~~~~~dllvsNPP-YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 216 H-------PLLEGKIDLLVSNPP-YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred c-------ccccCceeEEecCCC-cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 2 134579999999963 2211 00000000 0222344577899999999999987642
Q ss_pred CCCHHHH-----HHHHHhcCCceEEecCCCCCCCCcceEEEE
Q 021161 170 GKDTSLL-----YCQLKLFFPVVTFAKPKSSRNSSIEAFAVC 206 (316)
Q Consensus 170 ~~~~~~l-----~~~l~~~F~~V~~~KP~sSR~~S~E~fvVc 206 (316)
-+.-..+ ......++..+.++.-.+.| ++|++.
T Consensus 288 ~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~----~Rfv~i 325 (328)
T KOG2904|consen 288 RKEHSYLVRIWMISLKDDSNGKAAVVSDFAGR----PRFVII 325 (328)
T ss_pred cccCcHHHHHHHHhchhhccchhheeecccCC----cceEEE
Confidence 2222222 22333345666665544444 355543
No 148
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.10 E-value=5.1e-06 Score=75.76 Aligned_cols=99 Identities=22% Similarity=0.247 Sum_probs=72.9
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC--C-------CCCCcEEEecCccChhhHH
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--A-------PIEGVIQVQGDITNARTAE 109 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~--~-------~i~gV~~i~gDIt~~~t~~ 109 (316)
+++|.+||-||||+|.-..+++.-.+ +++.|.||+.++. . .-+||..+-+|.+.+....
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg------------~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~ 138 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVG------------PDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYR 138 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHT------------TTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGT
T ss_pred CCCCCEEEEecccCCCccchhhhccC------------CCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhh
Confidence 57899999999999999999999986 5789999999983 2 2479999999999987543
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
++- +.+|+|.+|-+- + + |+ ..++..+...||+||.|++.+
T Consensus 139 ----~lv-~~VDvI~~DVaQ-----p--~---Qa---~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 139 ----MLV-EMVDVIFQDVAQ-----P--D---QA---RIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp ----TTS---EEEEEEE-SS-----T--T---HH---HHHHHHHHHHEEEEEEEEEEE
T ss_pred ----ccc-ccccEEEecCCC-----h--H---HH---HHHHHHHHhhccCCcEEEEEE
Confidence 232 489999999651 1 1 22 334567788999999999765
No 149
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.08 E-value=5.8e-06 Score=75.39 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=65.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CC---------------CCcE
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI---------------EGVI 96 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i---------------~gV~ 96 (316)
.++.+|||+|||.|.-+..|+++ +..|+|||+++.+ .+ ..|+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~---------------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 100 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ---------------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEIT 100 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC---------------CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceE
Confidence 45679999999999999999975 3689999999852 11 2467
Q ss_pred EEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 97 ~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
+.++|+.+... -....||+|+--+.. +.+.. ++-...+..+.++|+|||++++
T Consensus 101 ~~~~D~~~l~~-------~~~~~fd~v~D~~~~-----~~l~~----~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 101 IYCGDFFALTA-------ADLADVDAVYDRAAL-----IALPE----EMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEECcccCCCc-------ccCCCeeEEEehHhH-----hhCCH----HHHHHHHHHHHHHcCCCCeEEE
Confidence 78899987631 112478998854321 11221 1224557788999999997554
No 150
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.07 E-value=6.8e-05 Score=71.43 Aligned_cols=109 Identities=21% Similarity=0.270 Sum_probs=69.1
Q ss_pred hhhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CCCC-
Q 021161 24 RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEG- 94 (316)
Q Consensus 24 Rsa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i~g- 94 (316)
||.+|-..+.....=+ .|++|||+||+-|-++-.++.+. ...|+|+|-.+.- .+-|
T Consensus 99 rSd~KW~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~G--------------A~~ViGiDP~~lf~~QF~~i~~~lg~ 163 (315)
T PF08003_consen 99 RSDWKWDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRG--------------AKSVIGIDPSPLFYLQFEAIKHFLGQ 163 (315)
T ss_pred cccchHHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcC--------------CCEEEEECCChHHHHHHHHHHHHhCC
Confidence 4555555544444212 57899999999999998887653 3579999988741 1111
Q ss_pred ---cEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 95 ---VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 95 ---V~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
+..+-.-|.+++ ..+.||+|+|-|-.. |-.+. ...|......|++||.+|+.+
T Consensus 164 ~~~~~~lplgvE~Lp---------~~~~FDtVF~MGVLY----Hrr~P-------l~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 164 DPPVFELPLGVEDLP---------NLGAFDTVFSMGVLY----HRRSP-------LDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred CccEEEcCcchhhcc---------ccCCcCEEEEeeehh----ccCCH-------HHHHHHHHHhhCCCCEEEEEE
Confidence 112111222211 136899999987432 33333 356788889999999999764
No 151
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.04 E-value=2.9e-05 Score=70.35 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=66.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCCCCCcEEEecCccChhhHHHHHhhcCCcc
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~i~gV~~i~gDIt~~~t~~~I~~~~~~~~ 119 (316)
.+...|.|+|||-+..++.+. ...+|.+.||.... +.| +..||.+.+ ++.+.
T Consensus 71 ~~~~viaD~GCGdA~la~~~~----------------~~~~V~SfDLva~n--~~V--tacdia~vP--------L~~~s 122 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVP----------------NKHKVHSFDLVAPN--PRV--TACDIANVP--------LEDES 122 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH------------------S---EEEEESS-SS--TTE--EES-TTS-S----------TT-
T ss_pred CCCEEEEECCCchHHHHHhcc----------------cCceEEEeeccCCC--CCE--EEecCccCc--------CCCCc
Confidence 346799999999998775543 23579999999876 344 568998876 45689
Q ss_pred ccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC--CCHHHHHHHHHhc-CCceE
Q 021161 120 ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG--KDTSLLYCQLKLF-FPVVT 188 (316)
Q Consensus 120 ~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~--~~~~~l~~~l~~~-F~~V~ 188 (316)
+|+||+-.+...|. + ...+.+|.|+||+||.|.+--..+ .+...+...++.+ |+...
T Consensus 123 vDv~VfcLSLMGTn---~---------~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 123 VDVAVFCLSLMGTN---W---------PDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKS 182 (219)
T ss_dssp EEEEEEES---SS----H---------HHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEE
T ss_pred eeEEEEEhhhhCCC---c---------HHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEe
Confidence 99999976554431 2 345789999999999998765443 4677777777765 54433
No 152
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.01 E-value=4e-05 Score=76.78 Aligned_cols=94 Identities=16% Similarity=0.166 Sum_probs=64.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
.++.+|||||||+|.++..++++. .+|+|+|+++.+ .+.+++++++|+.+.-
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~---------------~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l-- 358 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA---------------AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF-- 358 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC---------------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh--
Confidence 467899999999999999998763 589999999842 2457899999986531
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
.. ..+...+||+|++|.+ ..|.. +. +. ...-++|++.+.+.+
T Consensus 359 ~~--~~~~~~~fD~Vi~dPP--r~g~~---~~---------~~-~l~~~~~~~ivyvSC 400 (443)
T PRK13168 359 TD--QPWALGGFDKVLLDPP--RAGAA---EV---------MQ-ALAKLGPKRIVYVSC 400 (443)
T ss_pred hh--hhhhcCCCCEEEECcC--CcChH---HH---------HH-HHHhcCCCeEEEEEe
Confidence 00 0123457999999963 33431 11 22 222368888877765
No 153
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.00 E-value=2.3e-05 Score=70.60 Aligned_cols=90 Identities=22% Similarity=0.234 Sum_probs=60.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CC-CCcEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i-~gV~~i~gDIt~~~t 107 (316)
.++.+|||+|||+|.++..+++. ..+|+|+|+++.+ .. .++.+.++|+.+.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~---------------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-- 116 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR---------------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL-- 116 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC---------------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC--
Confidence 35789999999999999999864 2589999999842 11 3688889998763
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEE
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV 164 (316)
. .+||+|++-... .| .... -...++..+.+++++|+.+.
T Consensus 117 --------~-~~fD~ii~~~~l----~~-~~~~----~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 117 --------C-GEFDIVVCMDVL----IH-YPAS----DMAKALGHLASLTKERVIFT 155 (219)
T ss_pred --------C-CCcCEEEEhhHH----Hh-CCHH----HHHHHHHHHHHHhCCCEEEE
Confidence 2 579999984321 11 1111 12344566667777665444
No 154
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.98 E-value=2.7e-05 Score=74.58 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=52.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~~ 109 (316)
++.+|||||||+|.++..++++. .+|+|+|+++.+ .+.+++++++|+.+..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~---------------~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~--- 234 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG---------------MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA--- 234 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC---------------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH---
Confidence 46899999999999999998742 589999999842 2456889999986532
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCC
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGL 134 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~ 134 (316)
... .+.||+|++|.+ ..|+
T Consensus 235 ---~~~-~~~~D~Vv~dPP--r~G~ 253 (315)
T PRK03522 235 ---TAQ-GEVPDLVLVNPP--RRGI 253 (315)
T ss_pred ---Hhc-CCCCeEEEECCC--CCCc
Confidence 112 246999999953 4454
No 155
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.98 E-value=2.8e-05 Score=74.35 Aligned_cols=149 Identities=20% Similarity=0.266 Sum_probs=95.7
Q ss_pred CCcHHHHHHHHhCCchhhhhhHHhhhHHcCCc---------CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCC
Q 021161 8 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF---------EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDL 78 (316)
Q Consensus 8 ~rd~yyr~ak~~g~raRsa~KL~qId~~f~~~---------~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~ 78 (316)
.|++|=+ -.+.|+-.|..=+++++-.--+++ +++..++|||||-||=..-.-+. .-
T Consensus 76 Va~HYN~-~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kA--------------gI 140 (389)
T KOG1975|consen 76 VAEHYNE-RTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKA--------------GI 140 (389)
T ss_pred HHHHHHH-HHHHhHhhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhh--------------cc
Confidence 4556444 456666556655555544433332 67899999999999944332221 12
Q ss_pred CEEEEEeCCCCC------------C-----CCCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHH
Q 021161 79 PLIVAIDLQPMA------------P-----IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFV 141 (316)
Q Consensus 79 ~~IvaVDl~~~~------------~-----i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~ 141 (316)
..+|++|+.... . +--+.++.||-+...... +.+ +...+||+|=|-.+.... +..+
T Consensus 141 ~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d-~~e-~~dp~fDivScQF~~HYa----Fete- 213 (389)
T KOG1975|consen 141 GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMD-LLE-FKDPRFDIVSCQFAFHYA----FETE- 213 (389)
T ss_pred cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHH-hcc-CCCCCcceeeeeeeEeee----eccH-
Confidence 589999999852 0 224688999998765322 222 344559999998654321 2222
Q ss_pred HHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhc
Q 021161 142 QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 183 (316)
Q Consensus 142 ~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~ 183 (316)
.-...+|..+..+|+|||.|+..+ ++...|++.|+..
T Consensus 214 --e~ar~~l~Nva~~LkpGG~FIgTi---Pdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 214 --ESARIALRNVAKCLKPGGVFIGTI---PDSDVIIKRLRAG 250 (389)
T ss_pred --HHHHHHHHHHHhhcCCCcEEEEec---CcHHHHHHHHHhc
Confidence 223567888999999999999955 4667788888764
No 156
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.98 E-value=1.7e-05 Score=71.75 Aligned_cols=99 Identities=20% Similarity=0.286 Sum_probs=72.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CC-CCcEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i-~gV~~i~gDIt~~~t 107 (316)
.+..+||++|++.|-=+..+++.++ ++++|+.+|+.+.. .+ ..|+++.||..+ +
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~------------~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~--~ 109 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALP------------EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE--V 109 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTST------------TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH--H
T ss_pred cCCceEEEeccccccHHHHHHHhhc------------ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh--h
Confidence 4668999999999999999998875 46899999999841 22 358899999875 3
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
+..+...-..++||+|+.|+.. ..| ..-+..+.++|+|||.+|+=
T Consensus 110 l~~l~~~~~~~~fD~VFiDa~K--------~~y------~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDADK--------RNY------LEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEESTG--------GGH------HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhccCCCceeEEEEcccc--------cch------hhHHHHHhhhccCCeEEEEc
Confidence 3344333223589999999743 333 23466777999999999985
No 157
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=9.3e-05 Score=65.98 Aligned_cols=100 Identities=22% Similarity=0.255 Sum_probs=67.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------CCC-CcEEEecCccChhhHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIE-GVIQVQGDITNARTAEV 110 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~i~-gV~~i~gDIt~~~t~~~ 110 (316)
.|..|+|||||+|.++...+-. + ..+|+|||+.+.+ ... +|.++.+|+++..
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l-G-------------a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---- 106 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL-G-------------ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---- 106 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc-C-------------CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC----
Confidence 5678999999999999766543 2 3699999999953 122 5899999998742
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHH
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 178 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~ 178 (316)
.++|.|+.|.++....-| -|- ..++.||.++ ..|..+......+.+..
T Consensus 107 -------~~~dtvimNPPFG~~~rh-aDr----~Fl~~Ale~s--------~vVYsiH~a~~~~f~~~ 154 (198)
T COG2263 107 -------GKFDTVIMNPPFGSQRRH-ADR----PFLLKALEIS--------DVVYSIHKAGSRDFVEK 154 (198)
T ss_pred -------CccceEEECCCCcccccc-CCH----HHHHHHHHhh--------heEEEeeccccHHHHHH
Confidence 689999999876555333 342 2234555554 45666665554444433
No 158
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.95 E-value=8e-05 Score=65.26 Aligned_cols=107 Identities=20% Similarity=0.217 Sum_probs=80.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC------CCCCCcEEEecCccChhhHHHHHh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~------~~i~gV~~i~gDIt~~~t~~~I~~ 113 (316)
+.|.-|++||.|+|-++..+.++.- ....+++++.++. +..+++.++.||..+..+. +.
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv------------~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~---l~ 111 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGV------------RPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTT---LG 111 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCC------------CccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHH---Hh
Confidence 4678999999999999999988763 3467899999982 4578999999999997742 23
Q ss_pred hcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC
Q 021161 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (316)
Q Consensus 114 ~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~ 170 (316)
.+.+..||.|+|-... .++.-... .+.|+.+...|..||.||.-.+..
T Consensus 112 e~~gq~~D~viS~lPl-----l~~P~~~~----iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 112 EHKGQFFDSVISGLPL-----LNFPMHRR----IAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred hcCCCeeeeEEecccc-----ccCcHHHH----HHHHHHHHHhcCCCCeEEEEEecC
Confidence 4567899999995421 22222222 355777888999999999876653
No 159
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.94 E-value=3.7e-05 Score=68.52 Aligned_cols=101 Identities=12% Similarity=0.026 Sum_probs=64.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCC-CcEEEecCccChhhH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTA 108 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~-gV~~i~gDIt~~~t~ 108 (316)
.+.+|||||||+|+++..++.+.. .+|++||.++.+ .+. +++++++|+.+. +
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga--------------~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~--l 112 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA--------------KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA--L 112 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC--------------CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH--H
Confidence 578999999999999999988742 489999999842 122 577888998542 1
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
+.+.. ....+|+|+.|.+.. .. .. .++ ...+.. ..+|+++|.+|+..-+
T Consensus 113 ~~~~~--~~~~~dvv~~DPPy~-~~---~~----~~~-l~~l~~-~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 113 KFLAK--KPTFDNVIYLDPPFF-NG---AL----QAL-LELCEN-NWILEDTVLIVVEEDR 161 (189)
T ss_pred HHhhc--cCCCceEEEECcCCC-CC---cH----HHH-HHHHHH-CCCCCCCeEEEEEecC
Confidence 11110 123489999986442 11 11 112 222222 4589999998886544
No 160
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.93 E-value=1.6e-05 Score=74.01 Aligned_cols=83 Identities=30% Similarity=0.386 Sum_probs=62.4
Q ss_pred chhhhhhHHhhhHHc-------CCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC---
Q 021161 22 RARSAFKLLQIDEEF-------NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--- 91 (316)
Q Consensus 22 raRsa~KL~qId~~f-------~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~--- 91 (316)
-+||..||.|..-.| .-+.+++..+||||+||||+-.|.++. -.|+|||--+|++
T Consensus 185 PSRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~---------------m~V~aVDng~ma~sL~ 249 (358)
T COG2933 185 PSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRN---------------MRVYAVDNGPMAQSLM 249 (358)
T ss_pred CchhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhcc---------------eEEEEeccchhhhhhh
Confidence 479999998754433 235789999999999999999988763 5899999999975
Q ss_pred -CCCcEEEecCccChhhHHHHHhhcCCccccEEEeCC
Q 021161 92 -IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127 (316)
Q Consensus 92 -i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDg 127 (316)
-..|+....|=.... -...++|..|||+
T Consensus 250 dtg~v~h~r~DGfk~~--------P~r~~idWmVCDm 278 (358)
T COG2933 250 DTGQVTHLREDGFKFR--------PTRSNIDWMVCDM 278 (358)
T ss_pred cccceeeeeccCcccc--------cCCCCCceEEeeh
Confidence 223555666655421 0146899999998
No 161
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.89 E-value=1.7e-05 Score=76.81 Aligned_cols=114 Identities=21% Similarity=0.212 Sum_probs=70.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------C-----------C----CCcEEEe
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-----------I----EGVIQVQ 99 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~-----------i----~gV~~i~ 99 (316)
++.+|||||||-||=..=..+. .-..+||+|++... . . -...++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--------------~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~ 127 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--------------KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIA 127 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--------------T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEE
T ss_pred CCCeEEEecCCCchhHHHHHhc--------------CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheec
Confidence 7899999999999844433332 23689999999731 0 1 1346788
Q ss_pred cCccChhhHHHHHhhcCC--ccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHH
Q 021161 100 GDITNARTAEVVIRHFDG--CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLY 177 (316)
Q Consensus 100 gDIt~~~t~~~I~~~~~~--~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~ 177 (316)
+|.+... |.+.+.. .+||+|-|-.+.... .. ..+-....|..+...|+|||.|+..+.. ...|.
T Consensus 128 ~D~f~~~----l~~~~~~~~~~FDvVScQFalHY~----Fe---se~~ar~~l~Nvs~~Lk~GG~FIgT~~d---~~~i~ 193 (331)
T PF03291_consen 128 ADCFSES----LREKLPPRSRKFDVVSCQFALHYA----FE---SEEKARQFLKNVSSLLKPGGYFIGTTPD---SDEIV 193 (331)
T ss_dssp STTCCSH----HHCTSSSTTS-EEEEEEES-GGGG----GS---SHHHHHHHHHHHHHTEEEEEEEEEEEE----HHHHH
T ss_pred cccccch----hhhhccccCCCcceeehHHHHHHh----cC---CHHHHHHHHHHHHHhcCCCCEEEEEecC---HHHHH
Confidence 8888754 4444544 499999997654211 11 1122356788999999999999997764 45555
Q ss_pred HHHHh
Q 021161 178 CQLKL 182 (316)
Q Consensus 178 ~~l~~ 182 (316)
..|+.
T Consensus 194 ~~l~~ 198 (331)
T PF03291_consen 194 KRLRE 198 (331)
T ss_dssp CCHHC
T ss_pred HHHHh
Confidence 55554
No 162
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.87 E-value=3.5e-05 Score=69.09 Aligned_cols=103 Identities=17% Similarity=0.263 Sum_probs=70.1
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-----------CCCCCcEEEecCccChhhHHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-----------~~i~gV~~i~gDIt~~~t~~~I 111 (316)
..+||+|||-|.|...+|++. ++..++|||+... ..+.||.++++|.... +
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-------------Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~-----l 80 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-------------PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL-----L 80 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-------------TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH-----H
T ss_pred CeEEEecCCCCHHHHHHHHHC-------------CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH-----H
Confidence 389999999999999999986 4689999999973 1478999999999873 2
Q ss_pred HhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHH-HHHHHHHHHcccCCcEEEEEE
Q 021161 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI-LAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 112 ~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~-~aaL~~a~~vLkpGG~fV~Ki 167 (316)
...+..+++|-|...- ||. |-......-.|+ ...+....++|+|||.+.+++
T Consensus 81 ~~~~~~~~v~~i~i~F-PDP---WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 81 RRLFPPGSVDRIYINF-PDP---WPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp HHHSTTTSEEEEEEES---------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcccCCchheEEEeC-CCC---CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 2345667899998875 322 000000001111 345778889999999998876
No 163
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.87 E-value=0.00015 Score=72.13 Aligned_cols=70 Identities=21% Similarity=0.356 Sum_probs=52.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
.++.+|||||||+|.++..+++.. .+|+|+|+++-+ .+.+++++++|+.+. +
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~---------------~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~--l 353 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA---------------KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV--L 353 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC---------------CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH--H
Confidence 567899999999999999998753 489999999832 256889999998652 1
Q ss_pred HHHHhhcCCccccEEEeCCC
Q 021161 109 EVVIRHFDGCKADLVVCDGA 128 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDga 128 (316)
..+ .+...++|+|+.|.+
T Consensus 354 ~~~--~~~~~~~D~vi~dPP 371 (431)
T TIGR00479 354 PKQ--PWAGQIPDVLLLDPP 371 (431)
T ss_pred HHH--HhcCCCCCEEEECcC
Confidence 111 123457999999964
No 164
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.85 E-value=2.5e-05 Score=70.57 Aligned_cols=111 Identities=17% Similarity=0.165 Sum_probs=73.6
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-C----------CCCCcE-EEecCccChhhHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-A----------PIEGVI-QVQGDITNARTAEV 110 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-~----------~i~gV~-~i~gDIt~~~t~~~ 110 (316)
.-||++|||||.--+++- -.+...|+.+|.++. . ..+.+. ++.++..+...
T Consensus 78 ~~vLEvgcGtG~Nfkfy~--------------~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~--- 140 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYP--------------WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQ--- 140 (252)
T ss_pred cceEEecccCCCCccccc--------------CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcc---
Confidence 357999999997544332 124679999999983 2 245676 88888887642
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhcCC
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFP 185 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~F~ 185 (316)
+..+++|.|||-.. +-+... ...+|+...++|||||.++.--.-......+...|...++
T Consensus 141 ----l~d~s~DtVV~Tlv-----LCSve~------~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~e 200 (252)
T KOG4300|consen 141 ----LADGSYDTVVCTLV-----LCSVED------PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAE 200 (252)
T ss_pred ----cccCCeeeEEEEEE-----EeccCC------HHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhc
Confidence 45689999998642 111111 2467899999999999998744333344555555555443
No 165
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.85 E-value=9.9e-05 Score=70.99 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=45.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------C--------CCCcEEEecCccC
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P--------IEGVIQVQGDITN 104 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~--------i~gV~~i~gDIt~ 104 (316)
++.+|||||||+|.++..++++ +.+|+|+|+++.+ . ..++.+..+|+.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---------------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---------------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---------------CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 5689999999999999999874 2589999999832 1 1235667777643
Q ss_pred hhhHHHHHhhcCCccccEEEeCC
Q 021161 105 ARTAEVVIRHFDGCKADLVVCDG 127 (316)
Q Consensus 105 ~~t~~~I~~~~~~~~~DlVvsDg 127 (316)
+ .++||+|+|-.
T Consensus 209 ----------l-~~~fD~Vv~~~ 220 (315)
T PLN02585 209 ----------L-SGKYDTVTCLD 220 (315)
T ss_pred ----------c-CCCcCEEEEcC
Confidence 2 25799999864
No 166
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.85 E-value=9.9e-05 Score=71.43 Aligned_cols=134 Identities=17% Similarity=0.118 Sum_probs=88.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-C----------CCCCcEEEec-CccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-A----------PIEGVIQVQG-DITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-~----------~i~gV~~i~g-DIt~~~t 107 (316)
++|..|+|==|||||+...+. .+ +++++|.|++.- . .+++..++.+ |+++.+
T Consensus 196 ~~G~~vlDPFcGTGgiLiEag-l~--------------G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp- 259 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAG-LM--------------GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP- 259 (347)
T ss_pred ccCCEeecCcCCccHHHHhhh-hc--------------CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC-
Confidence 678999999999999876554 33 479999999973 1 1345556666 999875
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCC-ccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhcCCc
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHD-MDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPV 186 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~-~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~F~~ 186 (316)
|.+.++|.|++|++- |... ..-....+|...+|..+..+|++||.+|+-... ...-+.....|+-
T Consensus 260 -------l~~~~vdaIatDPPY---Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~----~~~~~~~~~~f~v 325 (347)
T COG1041 260 -------LRDNSVDAIATDPPY---GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR----DPRHELEELGFKV 325 (347)
T ss_pred -------CCCCccceEEecCCC---CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC----cchhhHhhcCceE
Confidence 555679999999632 2211 111113568899999999999999999986652 2233344555766
Q ss_pred eEEecCCCCCCCCcceE
Q 021161 187 VTFAKPKSSRNSSIEAF 203 (316)
Q Consensus 187 V~~~KP~sSR~~S~E~f 203 (316)
+..+.-...+.-+...|
T Consensus 326 ~~~~~~~~H~sLtR~i~ 342 (347)
T COG1041 326 LGRFTMRVHGSLTRVIY 342 (347)
T ss_pred EEEEEEeecCceEEEEE
Confidence 66655444333333333
No 167
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.85 E-value=6.7e-05 Score=68.59 Aligned_cols=102 Identities=27% Similarity=0.357 Sum_probs=72.9
Q ss_pred hhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCcEEEecCccChhh
Q 021161 32 IDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNART 107 (316)
Q Consensus 32 Id~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt~~~t 107 (316)
+.+.+. +.+..+|||||+|.|.++..++++.+ +.+++.+|+-... ..++|+++.||+.+.
T Consensus 92 ~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P-------------~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~-- 155 (241)
T PF00891_consen 92 LLEAFD-FSGFKTVVDVGGGSGHFAIALARAYP-------------NLRATVFDLPEVIEQAKEADRVEFVPGDFFDP-- 155 (241)
T ss_dssp HHHHST-TTTSSEEEEET-TTSHHHHHHHHHST-------------TSEEEEEE-HHHHCCHHHTTTEEEEES-TTTC--
T ss_pred hhcccc-ccCccEEEeccCcchHHHHHHHHHCC-------------CCcceeeccHhhhhccccccccccccccHHhh--
Confidence 344444 46678999999999999999999874 6799999996642 256899999999842
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCC--cEEEEEE
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG--GKFIAKI 167 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpG--G~fV~Ki 167 (316)
++. +|+|+.-. + +|++... -+...|..+...|+|| |++++--
T Consensus 156 -------~P~--~D~~~l~~---v--Lh~~~d~----~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 156 -------LPV--ADVYLLRH---V--LHDWSDE----DCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp -------CSS--ESEEEEES---S--GGGS-HH----HHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred -------hcc--ccceeeeh---h--hhhcchH----HHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 443 99999743 2 4555543 2345678889999999 9988753
No 168
>PLN02823 spermine synthase
Probab=97.83 E-value=0.00039 Score=67.50 Aligned_cols=139 Identities=19% Similarity=0.195 Sum_probs=89.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------C-------CCCcEEEecCccCh
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P-------IEGVIQVQGDITNA 105 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~-------i~gV~~i~gDIt~~ 105 (316)
...+||.||+|.|+....+.+.. ...+|++||+.+.. + -++++.+.+|....
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-------------~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~ 169 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-------------TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE 169 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-------------CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH
Confidence 45799999999999888776643 23589999999831 1 25688888988752
Q ss_pred hhHHHHHhhcCCccccEEEeCCCCCCC--CCCCccHHHHHHHH-HHHHH-HHHHcccCCcEEEEEEccC------CCHHH
Q 021161 106 RTAEVVIRHFDGCKADLVVCDGAPDVT--GLHDMDEFVQSQLI-LAGLT-VVTHVLKEGGKFIAKIFRG------KDTSL 175 (316)
Q Consensus 106 ~t~~~I~~~~~~~~~DlVvsDgapdvt--G~~~~de~~~~~L~-~aaL~-~a~~vLkpGG~fV~Kif~~------~~~~~ 175 (316)
+ +. ..++||+|++|.. +.. |.. ..|. ...+. .+.+.|+|||.|++..-.. .....
T Consensus 170 -----L-~~-~~~~yDvIi~D~~-dp~~~~~~-------~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~ 234 (336)
T PLN02823 170 -----L-EK-RDEKFDVIIGDLA-DPVEGGPC-------YQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSS 234 (336)
T ss_pred -----H-hh-CCCCccEEEecCC-CccccCcc-------hhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHH
Confidence 2 22 2468999999963 211 110 0111 23455 6789999999999753211 11345
Q ss_pred HHHHHHhcCCceEEecCC-CCCCCCcceEEEEec
Q 021161 176 LYCQLKLFFPVVTFAKPK-SSRNSSIEAFAVCEN 208 (316)
Q Consensus 176 l~~~l~~~F~~V~~~KP~-sSR~~S~E~fvVc~g 208 (316)
++..++..|..|..+.-. .|-.+ .=.|++|..
T Consensus 235 i~~tl~~vF~~v~~y~~~vPsf~~-~w~f~~aS~ 267 (336)
T PLN02823 235 IYNTLRQVFKYVVPYTAHVPSFAD-TWGWVMASD 267 (336)
T ss_pred HHHHHHHhCCCEEEEEeecCCCCC-ceEEEEEeC
Confidence 677788889998877521 12121 236888754
No 169
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.80 E-value=2.7e-05 Score=71.69 Aligned_cols=103 Identities=14% Similarity=0.170 Sum_probs=62.5
Q ss_pred cCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----CCCCcEEEe-cC-ccChhhH
Q 021161 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQ-GD-ITNARTA 108 (316)
Q Consensus 36 f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----~i~gV~~i~-gD-It~~~t~ 108 (316)
+.+-.....++|+|||+|-=++.++... -+|||+|+++.+ +.++++... +- +.+.+
T Consensus 28 a~~~~~h~~a~DvG~G~Gqa~~~iae~~---------------k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~-- 90 (261)
T KOG3010|consen 28 ASRTEGHRLAWDVGTGNGQAARGIAEHY---------------KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDE-- 90 (261)
T ss_pred HhhCCCcceEEEeccCCCcchHHHHHhh---------------hhheeecCCHHHHHHhhcCCCcccccCCccccccc--
Confidence 3333444489999999996666677664 379999999832 334433221 11 11111
Q ss_pred HHHHhhc-CCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCc-EEEEEEcc
Q 021161 109 EVVIRHF-DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG-KFIAKIFR 169 (316)
Q Consensus 109 ~~I~~~~-~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG-~fV~Kif~ 169 (316)
+.... ..+++|+|+|- +.+|-.| +..+++.+.++||+.| .+.+=.++
T Consensus 91 --~v~L~g~e~SVDlI~~A-----qa~HWFd-------le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 91 --MVDLLGGEESVDLITAA-----QAVHWFD-------LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred --cccccCCCcceeeehhh-----hhHHhhc-------hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 11111 25799999983 4455445 2466889999998876 55554444
No 170
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.80 E-value=5.8e-05 Score=67.93 Aligned_cols=63 Identities=27% Similarity=0.291 Sum_probs=47.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CC-CCcEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i-~gV~~i~gDIt~~~t 107 (316)
.++.+|||+|||+|.++..+++.. ..|+++|+++.+ .. ..+.+.++|+..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~---------------~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--- 123 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG---------------AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--- 123 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC---------------CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---
Confidence 457899999999999999988643 469999998732 12 357888888432
Q ss_pred HHHHHhhcCCccccEEEeCCC
Q 021161 108 AEVVIRHFDGCKADLVVCDGA 128 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDga 128 (316)
..++||+|+|...
T Consensus 124 --------~~~~fD~v~~~~~ 136 (230)
T PRK07580 124 --------LLGRFDTVVCLDV 136 (230)
T ss_pred --------ccCCcCEEEEcch
Confidence 1357999998653
No 171
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.79 E-value=0.00048 Score=66.47 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=86.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------C-CC-CcEEE-ecCccChh
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IE-GVIQV-QGDITNAR 106 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~-i~-gV~~i-~gDIt~~~ 106 (316)
.+.++||||||+|.....|+.+.. +.+++|+|+++.+ + +. .|.+. +.|..+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-------------~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~-- 178 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-------------GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA-- 178 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-------------CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh--
Confidence 457999999999999999887763 4799999999853 1 22 24443 333322
Q ss_pred hHHHHHhhc--CCccccEEEeCCCCCCCCCCCc----cHHH-----------------H---------HHHHHHHHHHHH
Q 021161 107 TAEVVIRHF--DGCKADLVVCDGAPDVTGLHDM----DEFV-----------------Q---------SQLILAGLTVVT 154 (316)
Q Consensus 107 t~~~I~~~~--~~~~~DlVvsDgapdvtG~~~~----de~~-----------------~---------~~L~~aaL~~a~ 154 (316)
+...+ ..++||+|+||.+.-.++.... .... . ..++...+....
T Consensus 179 ----i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~ 254 (321)
T PRK11727 179 ----IFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESK 254 (321)
T ss_pred ----hhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHH
Confidence 22211 3568999999975432222100 0000 0 112233445555
Q ss_pred HcccCCcEEEEEEccCCCHHHHHHHHHhc-CCceEEecCCCCCCCCcceEEEEecccCC
Q 021161 155 HVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVVTFAKPKSSRNSSIEAFAVCENYFPP 212 (316)
Q Consensus 155 ~vLkpGG~fV~Kif~~~~~~~l~~~l~~~-F~~V~~~KP~sSR~~S~E~fvVc~gf~~p 212 (316)
..++..|.|.+-+-...+...++..|+.. ...+.+..-.. .+.-+.+||=.|...
T Consensus 255 ~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~~q---G~~~~~~vaWsf~~~ 310 (321)
T PRK11727 255 AFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQ---GQKQSRFIAWTFLDD 310 (321)
T ss_pred HHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEEEEEeC---CCeeeEEEEeecCCH
Confidence 56666676666555566788888888765 44555543322 222335577777554
No 172
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.75 E-value=0.00017 Score=70.82 Aligned_cols=91 Identities=11% Similarity=0.076 Sum_probs=62.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~~ 109 (316)
++.+|||||||+|.++..++.+ ..+|+|||+++.+ .+.+++++++|+.+..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~---------------~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~--- 294 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP---------------DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFA--- 294 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc---------------CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH---
Confidence 4579999999999999998853 2589999999842 2457889999986532
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
..+ ..++|+|+.|.+ ..|.+ +. ++..+ .-++|++.+.+.+
T Consensus 295 ---~~~-~~~~D~vi~DPP--r~G~~---~~--------~l~~l-~~~~p~~ivyvsc 334 (374)
T TIGR02085 295 ---TAQ-MSAPELVLVNPP--RRGIG---KE--------LCDYL-SQMAPKFILYSSC 334 (374)
T ss_pred ---Hhc-CCCCCEEEECCC--CCCCc---HH--------HHHHH-HhcCCCeEEEEEe
Confidence 112 135999999964 34543 11 12222 2378988777755
No 173
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.70 E-value=6.9e-05 Score=69.12 Aligned_cols=101 Identities=20% Similarity=0.200 Sum_probs=76.8
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------CCCCcEEEecCccChhhHH
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~i~gV~~i~gDIt~~~t~~ 109 (316)
++++.+||=|||+.|--..+++..++ +.+.|+||+.++.. .-+||.-|..|.+++.-..
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVG------------peG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVG------------PEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYR 221 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccC------------CCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchhee
Confidence 58999999999999998888888875 67899999999853 2468888899999986433
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
. +- ..+|+|++|.++. | |+ ......|...||+||.||+.|-.
T Consensus 222 m----lV-gmVDvIFaDvaqp-------d---q~---RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 222 M----LV-GMVDVIFADVAQP-------D---QA---RIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred e----ee-eeEEEEeccCCCc-------h---hh---hhhhhhhhhhhccCCeEEEEEec
Confidence 2 22 3799999997642 1 11 22234567899999999988743
No 174
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.69 E-value=0.00035 Score=63.84 Aligned_cols=95 Identities=22% Similarity=0.292 Sum_probs=70.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCC-CcEEEe-cCccChh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQ-GDITNAR 106 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~-gV~~i~-gDIt~~~ 106 (316)
.+..+||++|.+.|-=+..++..++ .+++++.+|+++.. .+. .|..+. ||..+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~------------~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~-- 123 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALP------------DDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALD-- 123 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCC------------CCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHH--
Confidence 5789999999999999999998885 36799999999942 233 366666 46543
Q ss_pred hHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 107 t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
.+.+ +..++||+|+-|.+.. .| ...+..+..+|+|||.+|+=
T Consensus 124 ---~l~~-~~~~~fDliFIDadK~--------~y------p~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 124 ---VLSR-LLDGSFDLVFIDADKA--------DY------PEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred ---HHHh-ccCCCccEEEEeCChh--------hC------HHHHHHHHHHhCCCcEEEEe
Confidence 2222 3457999999997542 11 34578889999999999975
No 175
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.68 E-value=0.00076 Score=63.97 Aligned_cols=140 Identities=22% Similarity=0.275 Sum_probs=91.0
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------C-------CCCcEEEecCccChhh
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P-------IEGVIQVQGDITNART 107 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~-------i~gV~~i~gDIt~~~t 107 (316)
.+||=+|-|.|+++..+.+... -.+|+.|||.+.. + .+.|..+.+|....
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-------------ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~-- 142 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-------------VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF-- 142 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC-------------cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH--
Confidence 5999999999999999998753 4689999999831 1 26678888887642
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCC-CCccHHHHHHHHHHHHHHHHHcccCCcEEEEE---Ecc-CCCHHHHHHHHHh
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGL-HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK---IFR-GKDTSLLYCQLKL 182 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~-~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K---if~-~~~~~~l~~~l~~ 182 (316)
++... .+||+|++|....+ |- ..+-+ ...+..+.+.|+++|.+|+. .|- .+.+..++..++.
T Consensus 143 ----v~~~~-~~fDvIi~D~tdp~-gp~~~Lft-------~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~ 209 (282)
T COG0421 143 ----LRDCE-EKFDVIIVDSTDPV-GPAEALFT-------EEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSR 209 (282)
T ss_pred ----HHhCC-CcCCEEEEcCCCCC-CcccccCC-------HHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHh
Confidence 22233 38999999974332 32 11111 34567889999999999997 221 1223455666666
Q ss_pred cCCceEEe-cCCCCCCCCcceEEEEeccc
Q 021161 183 FFPVVTFA-KPKSSRNSSIEAFAVCENYF 210 (316)
Q Consensus 183 ~F~~V~~~-KP~sSR~~S~E~fvVc~gf~ 210 (316)
.|..+..+ .+..+-.+....|+++-..+
T Consensus 210 vf~~~~~~~~~ipt~~~g~~~f~~~s~~~ 238 (282)
T COG0421 210 VFSIVPPYVAPIPTYPSGFWGFIVASFNK 238 (282)
T ss_pred hccccccceeccceecCCceEEEEeecCC
Confidence 67665443 22233334446688876433
No 176
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.67 E-value=2.6e-05 Score=78.34 Aligned_cols=97 Identities=24% Similarity=0.252 Sum_probs=62.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-----------C-CCcEEEecCccChhhH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------I-EGVIQVQGDITNARTA 108 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-----------i-~gV~~i~gDIt~~~t~ 108 (316)
.+..|+|+|||+|..+...++.... .+...+|+||+-++++- . ..|+++++|+++...
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~---------~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l- 255 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGAR---------AGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL- 255 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHH---------HCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-
T ss_pred cceEEEEeCCCccHHHHHHHHHHHH---------hCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-
Confidence 3578999999999999877654310 01247999999999641 2 468999999998652
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEE
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV 164 (316)
.+++|+|||--. ..-|.+ | + ....|..+-+.|||||.++
T Consensus 256 --------pekvDIIVSElL-Gsfg~n---E-l----~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 256 --------PEKVDIIVSELL-GSFGDN---E-L----SPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --------SS-EEEEEE----BTTBTT---T-S----HHHHHHHGGGGEEEEEEEE
T ss_pred --------CCceeEEEEecc-CCcccc---c-c----CHHHHHHHHhhcCCCCEEe
Confidence 359999999732 112222 2 1 2233566788999999987
No 177
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.66 E-value=0.00022 Score=68.01 Aligned_cols=80 Identities=24% Similarity=0.272 Sum_probs=59.1
Q ss_pred hhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------CCCCcEEEecC
Q 021161 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGD 101 (316)
Q Consensus 31 qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~i~gV~~i~gD 101 (316)
|+.+.+.. +++..+||++||.|+.|..+++.++ +.++|+|+|.++.+ ...+++++++|
T Consensus 10 Evl~~L~~-~pg~~vlD~TlG~GGhS~~il~~~~------------~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~ 76 (296)
T PRK00050 10 EVVDALAI-KPDGIYVDGTFGGGGHSRAILERLG------------PKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGN 76 (296)
T ss_pred HHHHhhCC-CCCCEEEEeCcCChHHHHHHHHhCC------------CCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCC
Confidence 44444442 5778999999999999999999874 35899999999943 12468999999
Q ss_pred ccChhhHHHHHhhcCCccccEEEeCC
Q 021161 102 ITNARTAEVVIRHFDGCKADLVVCDG 127 (316)
Q Consensus 102 It~~~t~~~I~~~~~~~~~DlVvsDg 127 (316)
..+... +... +..++|.|+.|.
T Consensus 77 f~~l~~---~l~~-~~~~vDgIl~DL 98 (296)
T PRK00050 77 FSNLKE---VLAE-GLGKVDGILLDL 98 (296)
T ss_pred HHHHHH---HHHc-CCCccCEEEECC
Confidence 887532 2221 223799999995
No 178
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00076 Score=59.94 Aligned_cols=121 Identities=18% Similarity=0.185 Sum_probs=83.7
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC--------CC--CcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE--GVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~--------i~--gV~~i~gDIt~~~t~~~I 111 (316)
..-++++|||+|-.|..|++.+. +....++.|++|.+- .. ++..++.|..+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~------------~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~------- 104 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG------------PQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS------- 104 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC------------CCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-------
Confidence 67899999999999999999875 467899999999751 22 34566777654
Q ss_pred HhhcCCccccEEEeCCCCCCCCCCCc-cHHHH---------HHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHH
Q 021161 112 IRHFDGCKADLVVCDGAPDVTGLHDM-DEFVQ---------SQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 181 (316)
Q Consensus 112 ~~~~~~~~~DlVvsDgapdvtG~~~~-de~~~---------~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~ 181 (316)
.+..+++|+++-+.+.-.|....+ ++.+. .......+...-.+|.|.|.|.+-..+.....+++..++
T Consensus 105 --~l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~ 182 (209)
T KOG3191|consen 105 --GLRNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILE 182 (209)
T ss_pred --hhccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHh
Confidence 234489999999974322221111 12111 112234456677899999999997777777888888776
Q ss_pred hc
Q 021161 182 LF 183 (316)
Q Consensus 182 ~~ 183 (316)
..
T Consensus 183 ~~ 184 (209)
T KOG3191|consen 183 KK 184 (209)
T ss_pred hc
Confidence 64
No 179
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.66 E-value=0.00025 Score=65.99 Aligned_cols=99 Identities=14% Similarity=0.111 Sum_probs=70.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------C-CCCcEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~-i~gV~~i~gDIt~~~t 107 (316)
.+.++||++|++.|-=+.++++.++ ++++|+++|..+.. . ...|+++.||..+ +
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~------------~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e--~ 143 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALP------------EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP--V 143 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCC------------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH--H
Confidence 3568999999999998888988775 46899999999831 2 2468889998754 3
Q ss_pred HHHHHhhc-CCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 108 AEVVIRHF-DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 108 ~~~I~~~~-~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
+..+...- ..++||+|+.|+.. +.| ..-+..+..+|+|||.+|+=
T Consensus 144 L~~l~~~~~~~~~fD~iFiDadK--------~~Y------~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 144 LDQMIEDGKYHGTFDFIFVDADK--------DNY------INYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHhccccCCcccEEEecCCH--------HHh------HHHHHHHHHhcCCCeEEEEc
Confidence 33332211 12589999999742 222 23356678999999998863
No 180
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.65 E-value=0.00016 Score=67.30 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=52.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------CCCCcEEEecCccChhhHHH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~i~gV~~i~gDIt~~~t~~~ 110 (316)
.++.+|||+|||+|..+..++++. .+|+|+|+++.. ..++++++++|+.+..
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~---------------~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~---- 88 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRA---------------KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD---- 88 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhC---------------CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC----
Confidence 467899999999999999999863 489999999731 1457899999998743
Q ss_pred HHhhcCCccccEEEeCCCCC
Q 021161 111 VIRHFDGCKADLVVCDGAPD 130 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapd 130 (316)
+ ..+|.|+++.+..
T Consensus 89 ----~--~~~d~Vv~NlPy~ 102 (258)
T PRK14896 89 ----L--PEFNKVVSNLPYQ 102 (258)
T ss_pred ----c--hhceEEEEcCCcc
Confidence 2 3579999997543
No 181
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.65 E-value=0.00015 Score=66.14 Aligned_cols=139 Identities=19% Similarity=0.238 Sum_probs=85.4
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-------CCCCcEEEecCccChhhHHHHHhh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-------~i~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
..-+||+|||+|--.++|+. ++..++|||+++-+ .++| ..+.+|+-.-- -
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~---------------~Gh~wiGvDiSpsML~~a~~~e~eg-dlil~DMG~Gl-------p 107 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSD---------------SGHQWIGVDISPSMLEQAVERELEG-DLILCDMGEGL-------P 107 (270)
T ss_pred CcEEEEeccCCCcchheecc---------------CCceEEeecCCHHHHHHHHHhhhhc-CeeeeecCCCC-------C
Confidence 56899999999977777654 23689999999932 2332 23445544210 2
Q ss_pred cCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHH---HHHHH-HHhcC-CceEE
Q 021161 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS---LLYCQ-LKLFF-PVVTF 189 (316)
Q Consensus 115 ~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~---~l~~~-l~~~F-~~V~~ 189 (316)
|..+.||-|||-.|..+--+-+..-....+-++..+.....+|++|++.|+..+. ++.. .|..+ ++.-| .-+.+
T Consensus 108 frpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp-en~~q~d~i~~~a~~aGF~GGlvV 186 (270)
T KOG1541|consen 108 FRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP-ENEAQIDMIMQQAMKAGFGGGLVV 186 (270)
T ss_pred CCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc-cchHHHHHHHHHHHhhccCCceee
Confidence 5678999999988743211111111112333466777788999999999997654 3333 33322 33334 45777
Q ss_pred ecCCCCCCCCcceEEEE
Q 021161 190 AKPKSSRNSSIEAFAVC 206 (316)
Q Consensus 190 ~KP~sSR~~S~E~fvVc 206 (316)
--|.+.|+.- .|+|-
T Consensus 187 d~Pes~k~kK--~yLVL 201 (270)
T KOG1541|consen 187 DWPESTKNKK--YYLVL 201 (270)
T ss_pred ecccccccce--eEEEE
Confidence 7888877633 35553
No 182
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.64 E-value=0.00013 Score=64.77 Aligned_cols=103 Identities=21% Similarity=0.223 Sum_probs=61.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCC-CcEEEecCccChhhH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTA 108 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~-gV~~i~gDIt~~~t~ 108 (316)
.+.+||||+||+|+....+..|. ..+|+.||.++.+ ... .+..+.+|.... +
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG--------------A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~--l 105 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG--------------AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF--L 105 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT---------------SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH--H
T ss_pred CCCeEEEcCCccCccHHHHHhcC--------------CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH--H
Confidence 57899999999999998776664 3689999999853 122 367788886542 1
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~ 170 (316)
.+.. -.+.+||+|..|.+. .. ..+ ..++ +..+. -..+|+++|.+|+..-..
T Consensus 106 ~~~~--~~~~~fDiIflDPPY-~~-----~~~-~~~~-l~~l~-~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 106 LKLA--KKGEKFDIIFLDPPY-AK-----GLY-YEEL-LELLA-ENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHH--HCTS-EEEEEE--ST-TS-----CHH-HHHH-HHHHH-HTTSEEEEEEEEEEEETT
T ss_pred Hhhc--ccCCCceEEEECCCc-cc-----chH-HHHH-HHHHH-HCCCCCCCEEEEEEecCC
Confidence 1111 146799999999632 22 111 0111 12221 247999999999987554
No 183
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.63 E-value=0.00035 Score=63.98 Aligned_cols=99 Identities=17% Similarity=0.259 Sum_probs=75.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC--------C----CCcEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------I----EGVIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~--------i----~gV~~i~gDIt~~~t 107 (316)
-+..++||||.=+|-=+...+..++ ++++|+++|+.+-.. . ..|++++|+..+ .
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp------------~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e--s 137 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALP------------EDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE--S 137 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcC------------CCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh--h
Confidence 3568999999999988888888886 579999999998431 2 247888887654 4
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
+.+++...+.+.||+|+.|. +.+.|. .-+..+.++||+||.+++-
T Consensus 138 Ld~l~~~~~~~tfDfaFvDa--------dK~nY~------~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 138 LDELLADGESGTFDFAFVDA--------DKDNYS------NYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred HHHHHhcCCCCceeEEEEcc--------chHHHH------HHHHHHHhhcccccEEEEe
Confidence 56666666678999999984 455553 2356778999999999873
No 184
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.62 E-value=4.5e-05 Score=70.26 Aligned_cols=145 Identities=16% Similarity=0.184 Sum_probs=89.5
Q ss_pred CCCCcHHHHHHHHhCCchhhhhhHHhhhHHcCCcC-CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEE
Q 021161 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFE-GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAI 84 (316)
Q Consensus 6 ~~~rd~yyr~ak~~g~raRsa~KL~qId~~f~~~~-~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaV 84 (316)
+..-|.+|..-+..-+..|-+. +.+..+-+..-+ ...+++++|||-|.-+--+.+..+ ++.-+|.|+
T Consensus 36 ~k~wD~fy~~~~~rFfkdR~wL-~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~-----------n~~l~v~ac 103 (264)
T KOG2361|consen 36 SKYWDTFYKIHENRFFKDRNWL-LREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSP-----------NNRLKVYAC 103 (264)
T ss_pred hhhhhhhhhhccccccchhHHH-HHhhHHhhCccccChhhheeeccCCCcccchhhhcCC-----------CCCeEEEEc
Confidence 3445777776655444443331 222222222211 223899999999988777766542 245899999
Q ss_pred eCCCCCC----------CCCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHH
Q 021161 85 DLQPMAP----------IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVT 154 (316)
Q Consensus 85 Dl~~~~~----------i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~ 154 (316)
|-+|-+- ...+....-|++.++ +......+++|+|++---... ++ .+- ...++....
T Consensus 104 Dfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~----~~~~~~~~svD~it~IFvLSA--i~--pek-----~~~a~~nl~ 170 (264)
T KOG2361|consen 104 DFSPRAIELVKKSSGYDESRVEAFVWDLTSPS----LKEPPEEGSVDIITLIFVLSA--IH--PEK-----MQSVIKNLR 170 (264)
T ss_pred CCChHHHHHHHhccccchhhhcccceeccchh----ccCCCCcCccceEEEEEEEec--cC--hHH-----HHHHHHHHH
Confidence 9999541 124555566888765 334566688999987642111 11 011 246788889
Q ss_pred HcccCCcEEEEEEccCCCHHH
Q 021161 155 HVLKEGGKFIAKIFRGKDTSL 175 (316)
Q Consensus 155 ~vLkpGG~fV~Kif~~~~~~~ 175 (316)
++|||||.+++.-+...+..+
T Consensus 171 ~llKPGG~llfrDYg~~Dlaq 191 (264)
T KOG2361|consen 171 TLLKPGGSLLFRDYGRYDLAQ 191 (264)
T ss_pred HHhCCCcEEEEeecccchHHH
Confidence 999999999998886666553
No 185
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.62 E-value=0.00027 Score=65.92 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=74.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCCCCCcEEEecCccChhhHHHHHhhcCCcc
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~i~gV~~i~gDIt~~~t~~~I~~~~~~~~ 119 (316)
.....|.|+|||-+-.++ . ..-+|.+.||-+.. + .++..||++.+ ++.++
T Consensus 179 ~~~~vIaD~GCGEakiA~----~--------------~~~kV~SfDL~a~~--~--~V~~cDm~~vP--------l~d~s 228 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS----S--------------ERHKVHSFDLVAVN--E--RVIACDMRNVP--------LEDES 228 (325)
T ss_pred cCceEEEecccchhhhhh----c--------------cccceeeeeeecCC--C--ceeeccccCCc--------CccCc
Confidence 345689999999997665 1 12478999988764 2 34668999865 56789
Q ss_pred ccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC--CCHHHHHHHHHhc-CCceE
Q 021161 120 ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG--KDTSLLYCQLKLF-FPVVT 188 (316)
Q Consensus 120 ~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~--~~~~~l~~~l~~~-F~~V~ 188 (316)
+|++|+-.+...|.+ ...+..|.++|++||.+-+--.++ .+...+...+..+ |+..+
T Consensus 229 vDvaV~CLSLMgtn~------------~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~ 288 (325)
T KOG3045|consen 229 VDVAVFCLSLMGTNL------------ADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKH 288 (325)
T ss_pred ccEEEeeHhhhcccH------------HHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeee
Confidence 999998655444422 356889999999999998765443 3555555555443 65433
No 186
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.0002 Score=61.57 Aligned_cols=89 Identities=21% Similarity=0.245 Sum_probs=62.4
Q ss_pred CCchhh---hhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-----
Q 021161 20 GWRARS---AFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----- 91 (316)
Q Consensus 20 g~raRs---a~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~----- 91 (316)
.|-.|+ |.-|.-|++.|+=+ .|+.++|||||.|-.+... .+. ..-.|+|+|+.|.+-
T Consensus 25 QY~T~p~iAasM~~~Ih~Tygdi-Egkkl~DLgcgcGmLs~a~--sm~------------~~e~vlGfDIdpeALEIf~r 89 (185)
T KOG3420|consen 25 QYPTRPHIAASMLYTIHNTYGDI-EGKKLKDLGCGCGMLSIAF--SMP------------KNESVLGFDIDPEALEIFTR 89 (185)
T ss_pred hCCCcHHHHHHHHHHHHhhhccc-cCcchhhhcCchhhhHHHh--hcC------------CCceEEeeecCHHHHHHHhh
Confidence 344443 44456677777754 4689999999999988333 333 235899999999541
Q ss_pred ----CC-CcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCC
Q 021161 92 ----IE-GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (316)
Q Consensus 92 ----i~-gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdv 131 (316)
.+ ++.++|+||+++. +.++.||.++-|..+.+
T Consensus 90 NaeEfEvqidlLqcdildle--------~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 90 NAEEFEVQIDLLQCDILDLE--------LKGGIFDTAVINPPFGT 126 (185)
T ss_pred chHHhhhhhheeeeeccchh--------ccCCeEeeEEecCCCCc
Confidence 11 4578999999874 45689999999976543
No 187
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.58 E-value=0.00036 Score=64.61 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=49.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------CCCCcEEEecCccChhhHHH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~i~gV~~i~gDIt~~~t~~~ 110 (316)
.++.+|||+|||+|.++..++++. ..|+++|+++.. ...+++++++|+.+....
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~---------------~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~-- 90 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA---------------KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP-- 90 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC---------------CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--
Confidence 467899999999999999999875 359999999842 135789999999875421
Q ss_pred HHhhcCCcccc---EEEeCCC
Q 021161 111 VIRHFDGCKAD---LVVCDGA 128 (316)
Q Consensus 111 I~~~~~~~~~D---lVvsDga 128 (316)
.+| +|+++.+
T Consensus 91 --------~~d~~~~vvsNlP 103 (253)
T TIGR00755 91 --------DFPKQLKVVSNLP 103 (253)
T ss_pred --------HcCCcceEEEcCC
Confidence 344 9998864
No 188
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.57 E-value=0.00021 Score=68.97 Aligned_cols=94 Identities=20% Similarity=0.285 Sum_probs=66.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC----------CCC-cEEEecCccChhhHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEG-VIQVQGDITNARTAE 109 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~----------i~g-V~~i~gDIt~~~t~~ 109 (316)
.+..|||+|||+|..|+..++.. ..+|+|||-+.++. +.+ |++++|.|.+..
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG--------------A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~--- 122 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG--------------ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIE--- 122 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC--------------cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEe---
Confidence 56899999999999999998864 36999999999752 333 688899888753
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEE
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV 164 (316)
++.+++|+|+|.- -|..-+- -.++...|-.=-+.|+|||.+.
T Consensus 123 -----LP~eKVDiIvSEW----MGy~Ll~----EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 123 -----LPVEKVDIIVSEW----MGYFLLY----ESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred -----cCccceeEEeehh----hhHHHHH----hhhhhhhhhhhhhccCCCceEc
Confidence 4457999999863 2211111 1123344555567999999864
No 189
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.56 E-value=0.00026 Score=65.10 Aligned_cols=101 Identities=11% Similarity=-0.018 Sum_probs=69.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------C---------------CCCcE
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---------------IEGVI 96 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~---------------i~gV~ 96 (316)
.++.|||+.|||.|-=..+|+++. ..|+|||+++.+ . -.+|+
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G---------------~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKG---------------VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCC---------------CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 356899999999999999998753 589999999842 0 12578
Q ss_pred EEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 97 ~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
+++||+.++.... + ..++||+|.=-++. .-+...+ -..-.....++|+|||++++-+|.
T Consensus 107 ~~~gD~f~l~~~~---~--~~~~fD~VyDra~~-----~Alpp~~----R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 107 IYVADIFNLPKIA---N--NLPVFDIWYDRGAY-----IALPNDL----RTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred EEEccCcCCCccc---c--ccCCcCeeeeehhH-----hcCCHHH----HHHHHHHHHHHhCCCcEEEEEEEe
Confidence 8999999864200 0 12479998854432 2233221 123356678899999999987764
No 190
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.55 E-value=0.00015 Score=68.06 Aligned_cols=66 Identities=12% Similarity=0.210 Sum_probs=51.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC--CCcEEEecCccChhhHHHH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI--EGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i--~gV~~i~gDIt~~~t~~~I 111 (316)
.++.+|||+|||+|.++..++++. .+|+|+|+++.+ .. ++++++++|+.+.+.
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~---------------~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~---- 101 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA---------------AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDL---- 101 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC---------------CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCH----
Confidence 567899999999999999999874 389999999842 12 579999999987542
Q ss_pred HhhcCCccccEEEeCCC
Q 021161 112 IRHFDGCKADLVVCDGA 128 (316)
Q Consensus 112 ~~~~~~~~~DlVvsDga 128 (316)
.....|.|+++.+
T Consensus 102 ----~~~~~~~vv~NlP 114 (272)
T PRK00274 102 ----SELQPLKVVANLP 114 (272)
T ss_pred ----HHcCcceEEEeCC
Confidence 1111589999864
No 191
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.53 E-value=0.00011 Score=66.29 Aligned_cols=90 Identities=26% Similarity=0.293 Sum_probs=58.2
Q ss_pred CcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCC-cEEEecCccCh
Q 021161 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG-VIQVQGDITNA 105 (316)
Q Consensus 38 ~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~g-V~~i~gDIt~~ 105 (316)
.++++.+|+|+.||-|.|+..+++... ..+|+|+|++|.+ .+.+ +..+++|..+.
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~~-------------~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~ 164 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHGK-------------AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREF 164 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT--------------SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-
T ss_pred cCCcceEEEEccCCccHHHHHHhhhcC-------------ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHh
Confidence 357899999999999999999998542 4689999999953 2343 67889998864
Q ss_pred hhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEE
Q 021161 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (316)
Q Consensus 106 ~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV 164 (316)
. ....+|.|+++-.... .+ .|..+..++++||.+.
T Consensus 165 ~---------~~~~~drvim~lp~~~------~~---------fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 165 L---------PEGKFDRVIMNLPESS------LE---------FLDAALSLLKEGGIIH 199 (200)
T ss_dssp -----------TT-EEEEEE--TSSG------GG---------GHHHHHHHEEEEEEEE
T ss_pred c---------CccccCEEEECChHHH------HH---------HHHHHHHHhcCCcEEE
Confidence 2 2468999999763321 22 2566788999998753
No 192
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.53 E-value=0.00045 Score=67.54 Aligned_cols=73 Identities=15% Similarity=0.290 Sum_probs=52.0
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhHHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~~~I 111 (316)
.+|||||||+|.++..+++.. .+|+|||.++.+ .+.+++++.+|+.+. ++.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---------------~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~--l~~~ 270 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---------------RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEF--TQAM 270 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---------------CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHH--HHHH
Confidence 589999999999999888753 489999999842 245788999999653 2222
Q ss_pred Hhh--c--------CCccccEEEeCCCCCCCCC
Q 021161 112 IRH--F--------DGCKADLVVCDGAPDVTGL 134 (316)
Q Consensus 112 ~~~--~--------~~~~~DlVvsDgapdvtG~ 134 (316)
... + .+.++|+|+.|.+ -.|+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~D~v~lDPP--R~G~ 301 (362)
T PRK05031 271 NGVREFNRLKGIDLKSYNFSTIFVDPP--RAGL 301 (362)
T ss_pred hhcccccccccccccCCCCCEEEECCC--CCCC
Confidence 110 0 0235899999964 3565
No 193
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.51 E-value=0.00011 Score=65.49 Aligned_cols=88 Identities=24% Similarity=0.303 Sum_probs=65.9
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------C-----CCCcEEEecCccChhhHHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-----IEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~-----i~gV~~i~gDIt~~~t~~~I 111 (316)
..+.|||+|+|..|.+.++.- -+|+||+..|.. . ..++.++.||..+..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---------------~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~----- 93 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---------------ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD----- 93 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---------------ceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc-----
Confidence 689999999999999998863 489999999952 1 346889999998864
Q ss_pred HhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEE
Q 021161 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (316)
Q Consensus 112 ~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV 164 (316)
| +.+|+|+|-+ +|..+..+-+...++.++..||..++++
T Consensus 94 ---f--e~ADvvicEm---------lDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 94 ---F--ENADVVICEM---------LDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ---c--cccceeHHHH---------hhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 3 5799999976 2322222222345677778999999987
No 194
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.51 E-value=0.00037 Score=63.60 Aligned_cols=140 Identities=18% Similarity=0.188 Sum_probs=82.7
Q ss_pred HhCC-chhhhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------
Q 021161 18 EEGW-RARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------ 90 (316)
Q Consensus 18 ~~g~-raRsa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------ 90 (316)
+-+| +.+..--|.+..+... ..++.+||..|||.|--...|+++. ..|+|||+++.+
T Consensus 14 ~~~w~~~~~~p~L~~~~~~l~-~~~~~rvLvPgCG~g~D~~~La~~G---------------~~VvGvDls~~Ai~~~~~ 77 (218)
T PF05724_consen 14 QTPWDQGEPNPALVEYLDSLA-LKPGGRVLVPGCGKGYDMLWLAEQG---------------HDVVGVDLSPTAIEQAFE 77 (218)
T ss_dssp --TT--TTSTHHHHHHHHHHT-TSTSEEEEETTTTTSCHHHHHHHTT---------------EEEEEEES-HHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHHCC---------------CeEEEEecCHHHHHHHHH
Confidence 3455 2233444555544422 3567799999999999999998753 589999999842
Q ss_pred --C-------C--------CCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHH
Q 021161 91 --P-------I--------EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVV 153 (316)
Q Consensus 91 --~-------i--------~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a 153 (316)
. . .+|++.+||+.+.... ..++||+|.=-+ -+..++..+-. +-....
T Consensus 78 e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~-------~~g~fD~iyDr~-----~l~Alpp~~R~----~Ya~~l 141 (218)
T PF05724_consen 78 ENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE-------DVGKFDLIYDRT-----FLCALPPEMRE----RYAQQL 141 (218)
T ss_dssp HCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS-------CHHSEEEEEECS-----STTTS-GGGHH----HHHHHH
T ss_pred HhccCCCcccccceeeecCCceEEEEcccccCChh-------hcCCceEEEEec-----ccccCCHHHHH----HHHHHH
Confidence 0 1 2468899999986521 125799999444 33334332221 224567
Q ss_pred HHcccCCcE--EEEEEcc-----CC----CHHHHHHHHHhcCCceEE
Q 021161 154 THVLKEGGK--FIAKIFR-----GK----DTSLLYCQLKLFFPVVTF 189 (316)
Q Consensus 154 ~~vLkpGG~--fV~Kif~-----~~----~~~~l~~~l~~~F~~V~~ 189 (316)
..+|+|||+ +++-.+. |. ...++...+...|+-..+
T Consensus 142 ~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~~~f~i~~l 188 (218)
T PF05724_consen 142 ASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFGPGFEIEEL 188 (218)
T ss_dssp HHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHTTTEEEEEE
T ss_pred HHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhcCCcEEEEE
Confidence 889999999 4443332 21 345666666666654443
No 195
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.50 E-value=0.00052 Score=62.15 Aligned_cols=104 Identities=21% Similarity=0.266 Sum_probs=62.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-----C----C-CCCcEEEecCccChhhHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A----P-IEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-----~----~-i~gV~~i~gDIt~~~t~~~ 110 (316)
+...|+++|.+-||=....+.-+.. -+..++|++||+..- + | .++|++++||.++.+++.+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~---------~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~ 102 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLEL---------LGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQ 102 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHH---------TT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHT
T ss_pred CCCeEEEEecCCCchHHHHHHHHHH---------hCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHH
Confidence 3479999999999977776654310 014689999999421 1 1 2689999999999998877
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
+..........+|+-|+. |..++ +++.|+.-..++++|+.+|+
T Consensus 103 v~~~~~~~~~vlVilDs~------H~~~h------vl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 103 VRELASPPHPVLVILDSS------HTHEH------VLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp SGSS----SSEEEEESS----------SS------HHHHHHHHHHT--TT-EEEE
T ss_pred HHHhhccCCceEEEECCC------ccHHH------HHHHHHHhCccCCCCCEEEE
Confidence 665544456779999863 33333 35667778899999999997
No 196
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.50 E-value=0.00026 Score=61.86 Aligned_cols=112 Identities=19% Similarity=0.276 Sum_probs=61.9
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CC----CCcEEEecCccChhhHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI----EGVIQVQGDITNARTAEV 110 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i----~gV~~i~gDIt~~~t~~~ 110 (316)
..|+|+|||-||-+..+++.. .+|+|||+++.. .+ .+|.+++||..+..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---------------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~---- 61 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---------------DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL---- 61 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----------------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG----
T ss_pred CEEEEeccCcCHHHHHHHHhC---------------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH----
Confidence 369999999999999999875 489999999952 12 35799999998742
Q ss_pred HHhhcCCcc-ccEEEeCC---CCCCCCCC--Cc----cHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHH
Q 021161 111 VIRHFDGCK-ADLVVCDG---APDVTGLH--DM----DEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180 (316)
Q Consensus 111 I~~~~~~~~-~DlVvsDg---apdvtG~~--~~----de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l 180 (316)
..+.... +|+|+++. .|+..... ++ ...-..+|+..+..+ -..+++..-|..+..+|....
T Consensus 62 --~~~~~~~~~D~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~-------t~nv~l~LPRn~dl~ql~~~~ 132 (163)
T PF09445_consen 62 --KRLKSNKIFDVVFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKI-------TPNVVLFLPRNSDLNQLSQLT 132 (163)
T ss_dssp --GGB------SEEEE---BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--------S-EEEEEETTB-HHHHHHT-
T ss_pred --hhccccccccEEEECCCCCCccccccCccCHHHccCCCCHHHHHHHHHhh-------CCCEEEEeCCCCCHHHHHHHh
Confidence 2333222 89999984 34333222 22 121123333333222 345778787888888887664
Q ss_pred Hh
Q 021161 181 KL 182 (316)
Q Consensus 181 ~~ 182 (316)
+.
T Consensus 133 ~~ 134 (163)
T PF09445_consen 133 RE 134 (163)
T ss_dssp --
T ss_pred cc
Confidence 43
No 197
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.0005 Score=61.34 Aligned_cols=99 Identities=21% Similarity=0.213 Sum_probs=66.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------C-CCCcEEEecCccChhhH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTA 108 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~-i~gV~~i~gDIt~~~t~ 108 (316)
.|.+||||.||+|+...-+..|. ..+++.||.+..+ . ...+.++.+|.+ ..
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG--------------A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~--~~- 105 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG--------------AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL--RA- 105 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC--------------CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH--HH-
Confidence 46899999999999998877664 3689999999843 1 235777888887 22
Q ss_pred HHHHhhcCCc-cccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHH--HHHcccCCcEEEEEEcc
Q 021161 109 EVVIRHFDGC-KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTV--VTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 109 ~~I~~~~~~~-~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~--a~~vLkpGG~fV~Kif~ 169 (316)
+...... .||+|..|.+.. .|+.+.. .++.. ...+|+|+|.+|+..-.
T Consensus 106 ---L~~~~~~~~FDlVflDPPy~-~~l~~~~---------~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 106 ---LKQLGTREPFDLVFLDPPYA-KGLLDKE---------LALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred ---HHhcCCCCcccEEEeCCCCc-cchhhHH---------HHHHHHHhcCCcCCCcEEEEEeCC
Confidence 2223322 599999997543 3322111 11222 45689999999997644
No 198
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.47 E-value=0.00078 Score=59.46 Aligned_cols=121 Identities=18% Similarity=0.070 Sum_probs=71.8
Q ss_pred CchhhhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----------
Q 021161 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------- 90 (316)
Q Consensus 21 ~raRsa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------- 90 (316)
.|..-|+-|+.+-. .+++..|+|-+||+|.+....+........ ..+.+ ..+++|+|+++.+
T Consensus 12 L~~~lA~~ll~la~----~~~~~~vlDP~CGsGtiliEaa~~~~~~~~---~~~~~-~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 12 LRPTLAAALLNLAG----WRPGDVVLDPFCGSGTILIEAALMGANIPP---LNDIN-ELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp S-HHHHHHHHHHTT------TTS-EEETT-TTSHHHHHHHHHHTTTST---TTH-C-H--EEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----CCCCCEEeecCCCCCHHHHHHHHHhhCccc---ccccc-cccEEecCCCHHHHHHHHHHHHh
Confidence 34455666665422 367889999999999999877665431100 00000 2359999999842
Q ss_pred -CCC-CcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCC
Q 021161 91 -PIE-GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG 160 (316)
Q Consensus 91 -~i~-gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpG 160 (316)
.+. .+.+.++|+++.. +..+.+|+||+|.+ -|.+--.......|....+..+.++|++.
T Consensus 84 ag~~~~i~~~~~D~~~l~--------~~~~~~d~IvtnPP---yG~r~~~~~~~~~ly~~~~~~~~~~l~~~ 144 (179)
T PF01170_consen 84 AGVEDYIDFIQWDARELP--------LPDGSVDAIVTNPP---YGRRLGSKKDLEKLYRQFLRELKRVLKPR 144 (179)
T ss_dssp TT-CGGEEEEE--GGGGG--------GTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTC
T ss_pred cccCCceEEEecchhhcc--------cccCCCCEEEECcc---hhhhccCHHHHHHHHHHHHHHHHHHCCCC
Confidence 122 3678889999865 33468999999974 34443333334567778889999999993
No 199
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.47 E-value=0.0003 Score=67.80 Aligned_cols=91 Identities=22% Similarity=0.282 Sum_probs=66.0
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-----------CCCcEEEecCccChhhHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-----------i~gV~~i~gDIt~~~t~~~ 110 (316)
++.|||+|||.|..|...++.. ..+|.||+-+.|+. -+.+++|.|-|.+.+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG--------------A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie---- 239 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG--------------AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE---- 239 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC--------------cceEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc----
Confidence 6799999999999999888764 36999999999863 135788888887753
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEE
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV 164 (316)
++ +++|++|+... .+=+ ..| -.+.....|.+.|+|.|.+.
T Consensus 240 ----LP-Ek~DviISEPM--G~mL--~NE-----RMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 240 ----LP-EKVDVIISEPM--GYML--VNE-----RMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred ----Cc-hhccEEEeccc--hhhh--hhH-----HHHHHHHHHHhhcCCCCccc
Confidence 33 68999999742 1111 122 12344557789999999865
No 200
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.44 E-value=0.00048 Score=67.98 Aligned_cols=90 Identities=20% Similarity=0.164 Sum_probs=64.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~~ 109 (316)
++.+|||++||+|.++..++...+ ..+|+++|+++.+ .+.++++.++|+...
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~-------------~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~---- 119 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETG-------------VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL---- 119 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH----
Confidence 346899999999999999988753 2489999999843 244566778887542
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
+.. ..+||+|+.|. | |.. . ..+..+...+++||.+.+.
T Consensus 120 --l~~--~~~fD~V~lDP-~---Gs~--~---------~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 120 --LHE--ERKFDVVDIDP-F---GSP--A---------PFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --Hhh--cCCCCEEEECC-C---CCc--H---------HHHHHHHHHhcCCCEEEEE
Confidence 111 35799999995 3 331 1 2345667788999998875
No 201
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.43 E-value=0.00026 Score=67.49 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=52.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------C-CCCcEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~-i~gV~~i~gDIt~~~t 107 (316)
.++.+|||+|||+|.++..++++. .+|+|+|+++.. . ..+++++++|+....
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~---------------~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~- 98 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLA---------------KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE- 98 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhC---------------CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-
Confidence 577899999999999999998753 479999999831 1 356899999997642
Q ss_pred HHHHHhhcCCccccEEEeCCCCCC
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDV 131 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdv 131 (316)
...+|.|++|.+...
T Consensus 99 ---------~~~~d~VvaNlPY~I 113 (294)
T PTZ00338 99 ---------FPYFDVCVANVPYQI 113 (294)
T ss_pred ---------ccccCEEEecCCccc
Confidence 236899999976543
No 202
>PRK04148 hypothetical protein; Provisional
Probab=97.41 E-value=0.001 Score=56.31 Aligned_cols=94 Identities=19% Similarity=0.142 Sum_probs=67.0
Q ss_pred CCCeEEEECCCCCH-HHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHhhc
Q 021161 41 GVKRVVDLCAAPGS-WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHF 115 (316)
Q Consensus 41 ~~~rVLDLcagPG~-wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~~~ 115 (316)
++.+|||+|||+|. .+..|++. +..|+|+|+++.+ .-.++.++.+|++++... +
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~---------------G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~------~ 74 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES---------------GFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLE------I 74 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC---------------CCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHH------H
Confidence 45899999999995 88888753 3699999999964 124788999999987631 1
Q ss_pred CCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCC
Q 021161 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (316)
Q Consensus 116 ~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~ 172 (316)
-+.+|+|.+-=.| . +|+...+.+|.+ -|..++++.+.++.
T Consensus 75 -y~~a~liysirpp---------~----el~~~~~~la~~---~~~~~~i~~l~~e~ 114 (134)
T PRK04148 75 -YKNAKLIYSIRPP---------R----DLQPFILELAKK---INVPLIIKPLSGEE 114 (134)
T ss_pred -HhcCCEEEEeCCC---------H----HHHHHHHHHHHH---cCCCEEEEcCCCCC
Confidence 1569999985332 1 233445566654 37889998887764
No 203
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.0015 Score=59.07 Aligned_cols=96 Identities=21% Similarity=0.214 Sum_probs=73.4
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC--C-------CCCCcEEEecCccChhhHH
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--A-------PIEGVIQVQGDITNARTAE 109 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~--~-------~i~gV~~i~gDIt~~~t~~ 109 (316)
+++|.+||=|||++|--..+++.-.+ .+.|.||+.++- . .-+|+.-+.+|.+.+....
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~-------------~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~ 140 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG-------------EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYR 140 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC-------------CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhh
Confidence 47899999999999999999998774 589999999983 1 2478889999999988654
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
.+. +.+|+|.+|-|- ..|+++ +...|...||+||..++
T Consensus 141 ~~V-----e~VDviy~DVAQ----------p~Qa~I---~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 141 HLV-----EKVDVIYQDVAQ----------PNQAEI---LADNAEFFLKKGGYVVI 178 (231)
T ss_pred hhc-----ccccEEEEecCC----------chHHHH---HHHHHHHhcccCCeEEE
Confidence 332 469999999751 113332 34677889999995543
No 204
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.35 E-value=0.00021 Score=65.69 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=61.1
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-CC---CCcE--EEecCccChhhHHHHHhhc
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-PI---EGVI--QVQGDITNARTAEVVIRHF 115 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-~i---~gV~--~i~gDIt~~~t~~~I~~~~ 115 (316)
-.++||||||||-....|..+. .++.||||+..+ .. .|+. ..++|... ..+..
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a---------------~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~------Fl~~~ 184 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA---------------DRLTGVDISENMLAKAHEKGLYDTLYVAEAVL------FLEDL 184 (287)
T ss_pred cceeeecccCcCcccHhHHHHH---------------hhccCCchhHHHHHHHHhccchHHHHHHHHHH------Hhhhc
Confidence 4799999999998887776554 478999999842 11 1221 11222111 11223
Q ss_pred CCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCC
Q 021161 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (316)
Q Consensus 116 ~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~ 171 (316)
..++||||++- || ..-.--+...+..+..+|+|||.|...+-...
T Consensus 185 ~~er~DLi~Aa---DV--------l~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~ 229 (287)
T COG4976 185 TQERFDLIVAA---DV--------LPYLGALEGLFAGAAGLLAPGGLFAFSVETLP 229 (287)
T ss_pred cCCcccchhhh---hH--------HHhhcchhhHHHHHHHhcCCCceEEEEecccC
Confidence 46899999963 22 11111134557788899999999998775543
No 205
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.34 E-value=0.0012 Score=60.74 Aligned_cols=102 Identities=16% Similarity=0.141 Sum_probs=71.9
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-----------CCCCCcEEEecCccChhhHHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-----------~~i~gV~~i~gDIt~~~t~~~I 111 (316)
..+||+|||-|.|...+|++.+ +..++||++..- ..+.|+..+++|++. +
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-------------~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~------~ 110 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-------------EKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVE------V 110 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-------------CCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHH------H
Confidence 4899999999999999999864 578999999872 235688999999875 4
Q ss_pred HhhcC-CccccEEEeCCC-CCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 112 IRHFD-GCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 112 ~~~~~-~~~~DlVvsDga-pdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
++.+. +++.|-|.-.-+ |-.---|..--.+| ...|....++|+|||.|.+++
T Consensus 111 l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~----~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 111 LDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQ----PEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred HHhcCCCCCeeEEEEECCCCCCCccccccccCC----HHHHHHHHHHccCCCEEEEEe
Confidence 44544 448888887642 21111121111111 345778899999999999976
No 206
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.27 E-value=0.0013 Score=64.26 Aligned_cols=73 Identities=15% Similarity=0.300 Sum_probs=51.5
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhHHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~~~I 111 (316)
.+|||||||+|.++..|++.. .+|+|||+++.+ .+.++.++++|+.+.- ...
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---------------~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~--~~~ 261 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---------------RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFT--QAM 261 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---------------CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHH--HHH
Confidence 479999999999999998764 489999999842 2557889999996532 111
Q ss_pred Hh--hc---C-----CccccEEEeCCCCCCCCC
Q 021161 112 IR--HF---D-----GCKADLVVCDGAPDVTGL 134 (316)
Q Consensus 112 ~~--~~---~-----~~~~DlVvsDgapdvtG~ 134 (316)
.. .+ . ...+|+|+.|.+ -+|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~ 292 (353)
T TIGR02143 262 NGVREFRRLKGIDLKSYNCSTIFVDPP--RAGL 292 (353)
T ss_pred hhccccccccccccccCCCCEEEECCC--CCCC
Confidence 00 01 1 124899999964 4665
No 207
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.21 E-value=0.0031 Score=58.49 Aligned_cols=145 Identities=17% Similarity=0.135 Sum_probs=88.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------------CCCCcEEEecCccC
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------------~i~gV~~i~gDIt~ 104 (316)
.+..+||=||.|-|+....+.+.- +..+|+.||+.+.. .-++++.+.+|...
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-------------~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~ 141 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-------------PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK 141 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-------------T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-------------CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH
Confidence 357899999999999888776542 23589999999842 13578899999765
Q ss_pred hhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCC----CHHHHHHHH
Q 021161 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK----DTSLLYCQL 180 (316)
Q Consensus 105 ~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~----~~~~l~~~l 180 (316)
. ++.....+||+|+.|..- ..+... .. .....+..+.++|+|||.|++..-... ....+...+
T Consensus 142 ~------l~~~~~~~yDvIi~D~~d-p~~~~~-~l-----~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl 208 (246)
T PF01564_consen 142 F------LKETQEEKYDVIIVDLTD-PDGPAP-NL-----FTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTL 208 (246)
T ss_dssp H------HHTSSST-EEEEEEESSS-TTSCGG-GG-----SSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHH
T ss_pred H------HHhccCCcccEEEEeCCC-CCCCcc-cc-----cCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHH
Confidence 2 222232389999999632 111110 00 114557888999999999998763222 234456678
Q ss_pred HhcCCceEEec-CCCCCCCCcceEEEEeccc
Q 021161 181 KLFFPVVTFAK-PKSSRNSSIEAFAVCENYF 210 (316)
Q Consensus 181 ~~~F~~V~~~K-P~sSR~~S~E~fvVc~gf~ 210 (316)
+..|..|..+. +..+=.+..=.|.+|.+-.
T Consensus 209 ~~~F~~v~~~~~~vP~~~~~~~~~~~~s~~~ 239 (246)
T PF01564_consen 209 RSVFPQVKPYTAYVPSYGSGWWSFASASKDI 239 (246)
T ss_dssp HTTSSEEEEEEEECTTSCSSEEEEEEEESST
T ss_pred HHhCCceEEEEEEcCeecccceeEEEEeCCC
Confidence 88888766542 2222233333456665543
No 208
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.21 E-value=0.0025 Score=61.93 Aligned_cols=95 Identities=26% Similarity=0.362 Sum_probs=70.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCC-cEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG-VIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~g-V~~i~gDIt~~~t 107 (316)
..|.+|||+=||-|-||..++++.. .+|+|+|++|.+ ...+ |..++||......
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~--------------~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~ 252 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR--------------PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP 252 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC--------------ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh
Confidence 5699999999999999999998643 459999999953 2445 7889999886431
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCC
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~ 171 (316)
.+ ..+|-|+.....+. . ..+..|...|++||.+..-.+-..
T Consensus 253 ------~~--~~aDrIim~~p~~a------~---------~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 253 ------EL--GVADRIIMGLPKSA------H---------EFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred ------cc--ccCCEEEeCCCCcc------h---------hhHHHHHHHhhcCcEEEEEeccch
Confidence 11 57999998653211 1 235678889999999888666543
No 209
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.21 E-value=0.00034 Score=66.39 Aligned_cols=116 Identities=20% Similarity=0.228 Sum_probs=64.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CCCC-----cEEEecCccChh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEG-----VIQVQGDITNAR 106 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i~g-----V~~i~gDIt~~~ 106 (316)
.++.+|+|.|||+|+|...+.+++... ........|+|+|+.+.+ .+.| ....++|.....
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~------~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~ 118 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEK------RNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEND 118 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTC------HHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSH
T ss_pred cccceeechhhhHHHHHHHHHHhhccc------ccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccc
Confidence 567799999999999998888765100 000134689999999842 1122 346678876543
Q ss_pred hHHHHHhhcCCccccEEEeCCCCCCCCCCCc----cH-HH-----HHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDM----DE-FV-----QSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 107 t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~----de-~~-----~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
. ......||+|+++.+....+..+. +. +. ....-.+.+..+...|++||.+++-+
T Consensus 119 ~------~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 119 K------FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp S------CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred c------cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 1 112468999999975433311100 00 00 00111345677889999999987754
No 210
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.12 E-value=0.00042 Score=55.14 Aligned_cols=92 Identities=22% Similarity=0.256 Sum_probs=41.1
Q ss_pred EEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC---C-C-------CCCcEEEecCccChhhHHHHHhh
Q 021161 46 VDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---A-P-------IEGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 46 LDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~---~-~-------i~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
|++|+..|..+..+++.+.. +..+++++||..+. . . -.++++++||..+ ++. .
T Consensus 1 lEiG~~~G~st~~l~~~~~~----------~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~--~l~----~ 64 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRD----------NGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPD--FLP----S 64 (106)
T ss_dssp ------------------------------------EEEESS------------GGG-BTEEEEES-THH--HHH----H
T ss_pred Cccccccccccccccccccc----------cccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHH--HHH----H
Confidence 68999999999999887742 12258999999992 1 1 2368899998854 222 2
Q ss_pred cCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 115 ~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
+..+++|+|+-||. |.. +-....+..+...|+|||.+|+
T Consensus 65 ~~~~~~dli~iDg~------H~~------~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 65 LPDGPIDLIFIDGD------HSY------EAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp HHH--EEEEEEES---------H------HHHHHHHHHHGGGEEEEEEEEE
T ss_pred cCCCCEEEEEECCC------CCH------HHHHHHHHHHHHHcCCCeEEEE
Confidence 33568999999984 221 2235567889999999998876
No 211
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.10 E-value=0.0029 Score=59.18 Aligned_cols=91 Identities=22% Similarity=0.293 Sum_probs=61.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC----CCCcEEEecCccChhhHHHHHhhcC
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFD 116 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~----i~gV~~i~gDIt~~~t~~~I~~~~~ 116 (316)
...++||||||-|..+..++... .+|.|-+.++.+. -.|.+.+.. .+.. . .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---------------~~v~aTE~S~~Mr~rL~~kg~~vl~~--~~w~-------~-~ 148 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---------------KEVYATEASPPMRWRLSKKGFTVLDI--DDWQ-------Q-T 148 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---------------ceEEeecCCHHHHHHHHhCCCeEEeh--hhhh-------c-c
Confidence 35689999999999999998765 3699999998431 246655532 2211 1 2
Q ss_pred CccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 117 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 117 ~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
+.+||+|.|= ++--.++ +. ...|+.+.+.|+|+|.+++.+
T Consensus 149 ~~~fDvIscL---NvLDRc~-~P-------~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 149 DFKFDVISCL---NVLDRCD-RP-------LTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred CCceEEEeeh---hhhhccC-CH-------HHHHHHHHHHhCCCCEEEEEE
Confidence 3589999984 2211111 11 345778888999999999865
No 212
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.09 E-value=0.0024 Score=65.22 Aligned_cols=105 Identities=10% Similarity=0.143 Sum_probs=74.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-----------CCCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-----------~~i~gV~~i~gDIt~~~t~ 108 (316)
..+..+||+|||-|.|...+|++. ++..++|||+..- ..+.|+.++.+|+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-------------p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~----- 407 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-------------PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLD----- 407 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-------------CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHH-----
Confidence 356799999999999999999886 4678999999973 13668877777643
Q ss_pred HHHHhhcCCccccEEEeCCC-CCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 109 EVVIRHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDga-pdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
.+...|...++|-|...-+ |-..--|..--.++ ...+....++|+|||.+-+++
T Consensus 408 -~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~----~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 408 -LILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFN----KERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred -HHHHhcCcccccEEEEECCCCCCCCCCccccccC----HHHHHHHHHhcCCCCEEEEEc
Confidence 2455677788999998753 21111121111111 345778899999999998865
No 213
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.07 E-value=0.0018 Score=55.93 Aligned_cols=61 Identities=25% Similarity=0.403 Sum_probs=45.7
Q ss_pred CCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCC
Q 021161 93 EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (316)
Q Consensus 93 ~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~ 172 (316)
.+|++++||+.+.+ +..++||+|++.. ++|++.+ ...+|..+.++|||||.|++-.|...+
T Consensus 26 ~~i~~~~~d~~~lp--------~~~~~fD~v~~~~-----~l~~~~d------~~~~l~ei~rvLkpGG~l~i~d~~~~~ 86 (160)
T PLN02232 26 KCIEWIEGDAIDLP--------FDDCEFDAVTMGY-----GLRNVVD------RLRAMKEMYRVLKPGSRVSILDFNKSN 86 (160)
T ss_pred CceEEEEechhhCC--------CCCCCeeEEEecc-----hhhcCCC------HHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 36899999998754 4567899999853 3444432 246789999999999999987776543
No 214
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.05 E-value=0.0045 Score=58.78 Aligned_cols=124 Identities=22% Similarity=0.316 Sum_probs=80.1
Q ss_pred CCc---hhhhhhHHhhhHHcCCcC---CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---
Q 021161 20 GWR---ARSAFKLLQIDEEFNIFE---GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--- 90 (316)
Q Consensus 20 g~r---aRsa~KL~qId~~f~~~~---~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--- 90 (316)
||| .|-..-..+|.....-++ ..-+|||+|||+|.-..-+....+. ....|.-.|.++..
T Consensus 108 GWrGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~-----------~~~~i~LrDys~~Nv~~ 176 (311)
T PF12147_consen 108 GWRGIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPE-----------RPDSILLRDYSPINVEK 176 (311)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCC-----------CCceEEEEeCCHHHHHH
Confidence 564 444443344444444332 3469999999999876555554431 13588999999852
Q ss_pred --------CCCCc-EEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCc
Q 021161 91 --------PIEGV-IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG 161 (316)
Q Consensus 91 --------~i~gV-~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG 161 (316)
.+.++ ++.++|..+..++..+ .-..++++..| ++++ +--..++...|.-....|.|||
T Consensus 177 g~~li~~~gL~~i~~f~~~dAfd~~~l~~l-----~p~P~l~iVsG------L~El--F~Dn~lv~~sl~gl~~al~pgG 243 (311)
T PF12147_consen 177 GRALIAERGLEDIARFEQGDAFDRDSLAAL-----DPAPTLAIVSG------LYEL--FPDNDLVRRSLAGLARALEPGG 243 (311)
T ss_pred HHHHHHHcCCccceEEEecCCCCHhHhhcc-----CCCCCEEEEec------chhh--CCcHHHHHHHHHHHHHHhCCCc
Confidence 25666 8999999997765432 23579998655 3321 1113455667788889999999
Q ss_pred EEEEEE
Q 021161 162 KFIAKI 167 (316)
Q Consensus 162 ~fV~Ki 167 (316)
.+|..-
T Consensus 244 ~lIyTg 249 (311)
T PF12147_consen 244 YLIYTG 249 (311)
T ss_pred EEEEcC
Confidence 998843
No 215
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.94 E-value=0.018 Score=55.59 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=71.0
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-----------CCCCCcEE--EecCccCh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQ--VQGDITNA 105 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-----------~~i~gV~~--i~gDIt~~ 105 (316)
+.++..+||||||.|..+..|.+.+.. .......++||++.- ..+++|.+ +.||.++.
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~---------~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALER---------QKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHh---------cCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 456779999999999999999888731 112468999999972 13566655 78999874
Q ss_pred hhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHH-cccCCcEEEEEE
Q 021161 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTH-VLKEGGKFIAKI 167 (316)
Q Consensus 106 ~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~-vLkpGG~fV~Ki 167 (316)
-. .+..........+|+.=|+ .-|+...++ . .+.|....+ .|+|||.|++-+
T Consensus 145 l~--~l~~~~~~~~~r~~~flGS--siGNf~~~e--a----~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 145 LA--WLKRPENRSRPTTILWLGS--SIGNFSRPE--A----AAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred Hh--hcccccccCCccEEEEeCc--cccCCCHHH--H----HHHHHHHHHhhCCCCCEEEEec
Confidence 21 1111011234678887663 334433332 2 234555666 999999999854
No 216
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.94 E-value=0.0024 Score=57.74 Aligned_cols=114 Identities=14% Similarity=0.158 Sum_probs=64.6
Q ss_pred HHhhhHHcCCcCCCC-eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCc-
Q 021161 29 LLQIDEEFNIFEGVK-RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGV- 95 (316)
Q Consensus 29 L~qId~~f~~~~~~~-rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV- 95 (316)
++++..++ +.... +||++|+|+|-...++++.++. ...---|+.+.. ..++|
T Consensus 14 Il~vL~~~--l~~~~~~vLEiaSGtGqHa~~FA~~lP~-------------l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~ 78 (204)
T PF06080_consen 14 ILEVLKQY--LPDSGTRVLEIASGTGQHAVYFAQALPH-------------LTWQPSDPDDNLRPSIRAWIAEAGLPNVR 78 (204)
T ss_pred HHHHHHHH--hCccCceEEEEcCCccHHHHHHHHHCCC-------------CEEcCCCCChHHHhhHHHHHHhcCCcccC
Confidence 34444443 44444 5999999999999999999851 222223333211 12333
Q ss_pred EEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 96 ~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
.-+.-|++.....-.....+...++|.|+|-=. +|- ..-......+..+.++|++||.|++-
T Consensus 79 ~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~-----lHI----~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 79 PPLALDVSAPPWPWELPAPLSPESFDAIFCINM-----LHI----SPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred CCeEeecCCCCCccccccccCCCCcceeeehhH-----HHh----cCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 123457766521100000123468999998421 121 22233456688889999999999873
No 217
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.93 E-value=0.0061 Score=53.38 Aligned_cols=115 Identities=19% Similarity=0.160 Sum_probs=61.7
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-------------CCCcEEEecCccCh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------------IEGVIQVQGDITNA 105 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-------------i~gV~~i~gDIt~~ 105 (316)
...+.+||+||||+|--+.++++..+ ..+|+.-|..+..+ -..|.+..-|-.+.
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~-------------~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~ 109 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG-------------AARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDE 109 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T--------------SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-
T ss_pred hcCCceEEEECCccchhHHHHHhccC-------------CceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCc
Confidence 45678999999999988888887632 46899999988311 12355555555442
Q ss_pred hhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE-ccCCCHHHHHHHHH
Q 021161 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI-FRGKDTSLLYCQLK 181 (316)
Q Consensus 106 ~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki-f~~~~~~~l~~~l~ 181 (316)
... +.+...+||+|++ .|+.... .+....+....++|+++|.+++.. .|......++..++
T Consensus 110 ~~~----~~~~~~~~D~Ila---sDv~Y~~--------~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~~ 171 (173)
T PF10294_consen 110 LDS----DLLEPHSFDVILA---SDVLYDE--------ELFEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRLK 171 (173)
T ss_dssp HHH----HHHS-SSBSEEEE---ES--S-G--------GGHHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH-
T ss_pred ccc----cccccccCCEEEE---ecccchH--------HHHHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHhh
Confidence 211 1234568999996 3554321 122344566778999999966543 24334445555554
No 218
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.90 E-value=0.0029 Score=58.63 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=30.0
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCC
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~ 88 (316)
+.-+||+||-.|-.|+.+++..+ .-.|+||||.+
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~-------------~r~iLGvDID~ 92 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFG-------------PRRILGVDIDP 92 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhc-------------cceeeEeeccH
Confidence 46899999999999999999985 24699999997
No 219
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.89 E-value=0.0071 Score=54.77 Aligned_cols=105 Identities=20% Similarity=0.205 Sum_probs=59.6
Q ss_pred HhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------------C---
Q 021161 30 LQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------P--- 91 (316)
Q Consensus 30 ~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------------~--- 91 (316)
..|.++.+ +.++..++|||||-|.....++-..+ -.+.+||++++.. .
T Consensus 32 ~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~-------------~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g 97 (205)
T PF08123_consen 32 SKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTG-------------CKKSVGIEILPELHDLAEELLEELKKRMKHYG 97 (205)
T ss_dssp HHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH---------------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcC-------------CcEEEEEEechHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555 46788999999999998776665543 2369999999831 0
Q ss_pred --CCCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 92 --IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 92 --i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
...+.+.+||+.+......++ ..+|+|+++-- -.++.+. .+|.....-||+|-.+|.
T Consensus 98 ~~~~~v~l~~gdfl~~~~~~~~~-----s~AdvVf~Nn~-------~F~~~l~-----~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 98 KRPGKVELIHGDFLDPDFVKDIW-----SDADVVFVNNT-------CFDPDLN-----LALAELLLELKPGARIIS 156 (205)
T ss_dssp B---EEEEECS-TTTHHHHHHHG-----HC-SEEEE--T-------TT-HHHH-----HHHHHHHTTS-TT-EEEE
T ss_pred cccccceeeccCccccHhHhhhh-----cCCCEEEEecc-------ccCHHHH-----HHHHHHHhcCCCCCEEEE
Confidence 123677899999876544432 46999999842 1344332 334455667888877664
No 220
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.81 E-value=0.018 Score=52.62 Aligned_cols=88 Identities=23% Similarity=0.258 Sum_probs=63.4
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~~~ 110 (316)
+.+++|+|+|+|-=+..|+ -.. ++.+|+-+|-..-. .++||+++++.+.+...
T Consensus 68 ~~~~~DIGSGaGfPGipLA-I~~------------p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~--- 131 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLA-IAF------------PDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ--- 131 (215)
T ss_pred CCEEEEeCCCCCCchhhHH-Hhc------------cCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc---
Confidence 5899999999998777776 222 35678899987742 47899999998876431
Q ss_pred HHhhcCCcc-ccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 111 VIRHFDGCK-ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 111 I~~~~~~~~-~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
... ||+|+|.+-- +++ ..+..+..+||+||.|++-
T Consensus 132 ------~~~~~D~vtsRAva------~L~---------~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 132 ------EKKQYDVVTSRAVA------SLN---------VLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred ------ccccCcEEEeehcc------chH---------HHHHHHHHhcccCCcchhh
Confidence 123 9999998621 111 2357789999999998753
No 221
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.78 E-value=0.0059 Score=60.18 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=65.1
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~~~ 110 (316)
+.+|||+.||+|..+..++.+.. ...+|+++|+++.+ .+.++.++++|....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~------------ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~----- 107 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIE------------GVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANV----- 107 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCC------------CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHH-----
Confidence 35899999999999999988752 12589999999953 134577788887653
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
+... ..+||+|..|. + |.. . ..+..+.+.+++||.+.+.
T Consensus 108 -l~~~-~~~fDvIdlDP-f---Gs~--~---------~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 108 -LRYR-NRKFHVIDIDP-F---GTP--A---------PFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -HHHh-CCCCCEEEeCC-C---CCc--H---------HHHHHHHHhcccCCEEEEE
Confidence 1112 35799999996 3 221 1 2356778889999998876
No 222
>PRK00536 speE spermidine synthase; Provisional
Probab=96.71 E-value=0.015 Score=54.62 Aligned_cols=109 Identities=18% Similarity=0.200 Sum_probs=72.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------C-------CCCcEEEecCccC
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P-------IEGVIQVQGDITN 104 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~-------i~gV~~i~gDIt~ 104 (316)
.+.++||=+|.|-|+-..-+.+. + .+|+.||+.+.. | -|+|+.+..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh--------------~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~---- 131 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY--------------D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ---- 131 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc--------------C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----
Confidence 45689999999999976666553 1 389999999842 1 245554431
Q ss_pred hhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEc----cCCCHHHHHHHH
Q 021161 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF----RGKDTSLLYCQL 180 (316)
Q Consensus 105 ~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif----~~~~~~~l~~~l 180 (316)
+.+. ..++||+||.|..++ . .....+.+.|+|||.||+..= .......++..+
T Consensus 132 ------~~~~-~~~~fDVIIvDs~~~-------~---------~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l 188 (262)
T PRK00536 132 ------LLDL-DIKKYDLIICLQEPD-------I---------HKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNM 188 (262)
T ss_pred ------hhhc-cCCcCCEEEEcCCCC-------h---------HHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHH
Confidence 1111 236899999996432 1 224567899999999998532 222345677778
Q ss_pred HhcCCceEEe
Q 021161 181 KLFFPVVTFA 190 (316)
Q Consensus 181 ~~~F~~V~~~ 190 (316)
+..|..|..+
T Consensus 189 ~~~F~~v~~y 198 (262)
T PRK00536 189 GDFFSIAMPF 198 (262)
T ss_pred HhhCCceEEE
Confidence 8889866654
No 223
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.0089 Score=56.02 Aligned_cols=77 Identities=19% Similarity=0.278 Sum_probs=57.2
Q ss_pred hhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC---------CCCCCcEEEecC
Q 021161 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGD 101 (316)
Q Consensus 31 qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~---------~~i~gV~~i~gD 101 (316)
.|-+.-++ +++.+||++|+|.|+.|..|+++. .+|+||++.+. ....+++.++||
T Consensus 21 kIv~~a~~-~~~d~VlEIGpG~GaLT~~Ll~~~---------------~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~D 84 (259)
T COG0030 21 KIVEAANI-SPGDNVLEIGPGLGALTEPLLERA---------------ARVTAIEIDRRLAEVLKERFAPYDNLTVINGD 84 (259)
T ss_pred HHHHhcCC-CCCCeEEEECCCCCHHHHHHHhhc---------------CeEEEEEeCHHHHHHHHHhcccccceEEEeCc
Confidence 33333343 348899999999999999999975 47999999983 134679999999
Q ss_pred ccChhhHHHHHhhcCCccccEEEeCCCCC
Q 021161 102 ITNARTAEVVIRHFDGCKADLVVCDGAPD 130 (316)
Q Consensus 102 It~~~t~~~I~~~~~~~~~DlVvsDgapd 130 (316)
+...+..+. ...+.|++|.+-+
T Consensus 85 aLk~d~~~l-------~~~~~vVaNlPY~ 106 (259)
T COG0030 85 ALKFDFPSL-------AQPYKVVANLPYN 106 (259)
T ss_pred hhcCcchhh-------cCCCEEEEcCCCc
Confidence 998653211 0689999997543
No 224
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.61 E-value=0.003 Score=63.79 Aligned_cols=106 Identities=21% Similarity=0.242 Sum_probs=58.7
Q ss_pred hhhHHcCCc-C--CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC------C-CCcEEEec
Q 021161 31 QIDEEFNIF-E--GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I-EGVIQVQG 100 (316)
Q Consensus 31 qId~~f~~~-~--~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~------i-~gV~~i~g 100 (316)
+|.+-..+. . ....+||+|||.|+|+.+|.++. ..++.+-.....+ + .||-.+.+
T Consensus 104 ~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~---------------V~t~s~a~~d~~~~qvqfaleRGvpa~~~ 168 (506)
T PF03141_consen 104 QIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN---------------VTTMSFAPNDEHEAQVQFALERGVPAMIG 168 (506)
T ss_pred HHHHHhhccccCCceEEEEeccceeehhHHHHhhCC---------------ceEEEcccccCCchhhhhhhhcCcchhhh
Confidence 455555442 2 34689999999999999998753 3333332221110 1 23322222
Q ss_pred CccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 101 DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 101 DIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
-+-+. +--|....||+|.|-.. .+.... .+. -.|...-++|||||.||..-
T Consensus 169 ~~~s~------rLPfp~~~fDmvHcsrc-~i~W~~-~~g--------~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 169 VLGSQ------RLPFPSNAFDMVHCSRC-LIPWHP-NDG--------FLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred hhccc------cccCCccchhhhhcccc-cccchh-ccc--------ceeehhhhhhccCceEEecC
Confidence 22110 01256789999999642 121111 111 12456789999999999864
No 225
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.57 E-value=0.0061 Score=54.28 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=63.8
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhHHHHH
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~~~I~ 112 (316)
+++|+|+|.|-=...|+=.. ++.+++.+|-.... .+.||+++++.+.+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-------------p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~------- 110 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-------------PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP------- 110 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--------------TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT-------
T ss_pred eEEecCCCCCChhHHHHHhC-------------CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc-------
Confidence 89999999997777776554 46789999988731 478999999988761
Q ss_pred hhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCC
Q 021161 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (316)
Q Consensus 113 ~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~ 172 (316)
....+||+|+|-+-- .+ ...+..+..+|++||.+++ +.|.+
T Consensus 111 --~~~~~fd~v~aRAv~------~l---------~~l~~~~~~~l~~~G~~l~--~KG~~ 151 (184)
T PF02527_consen 111 --EYRESFDVVTARAVA------PL---------DKLLELARPLLKPGGRLLA--YKGPD 151 (184)
T ss_dssp --TTTT-EEEEEEESSS------SH---------HHHHHHHGGGEEEEEEEEE--EESS-
T ss_pred --ccCCCccEEEeehhc------CH---------HHHHHHHHHhcCCCCEEEE--EcCCC
Confidence 124789999998621 11 2346788999999999887 35554
No 226
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.54 E-value=0.01 Score=55.86 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=55.7
Q ss_pred hhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-CC--------CC---CcEEE
Q 021161 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-AP--------IE---GVIQV 98 (316)
Q Consensus 31 qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-~~--------i~---gV~~i 98 (316)
||-++-. ++++..||++|.|||..++.|.+.. .+|||+++.+- .+ .+ ...++
T Consensus 49 ~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~---------------kkVvA~E~Dprmvael~krv~gtp~~~kLqV~ 112 (315)
T KOG0820|consen 49 QIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAG---------------KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVL 112 (315)
T ss_pred HHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhc---------------CeEEEEecCcHHHHHHHHHhcCCCccceeeEE
Confidence 4433333 4788999999999999999998864 69999999993 21 22 36788
Q ss_pred ecCccChhhHHHHHhhcCCccccEEEeCCCCC
Q 021161 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPD 130 (316)
Q Consensus 99 ~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapd 130 (316)
.||....+ ...||.+|++-.+.
T Consensus 113 ~gD~lK~d----------~P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 113 HGDFLKTD----------LPRFDGCVSNLPYQ 134 (315)
T ss_pred ecccccCC----------CcccceeeccCCcc
Confidence 99998753 35799999987543
No 227
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.018 Score=54.32 Aligned_cols=91 Identities=20% Similarity=0.254 Sum_probs=67.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CC-CCcEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i-~gV~~i~gDIt~~~t 107 (316)
++|.+|++-|.|.||+|.++++.++ +.++++..|.-... .+ .+|++..-||...-.
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~------------ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVA------------PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhC------------cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 7999999999999999999999986 57899999986532 12 368888888887542
Q ss_pred HHHHHhhcCCccccEEEeCC-CCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 108 AEVVIRHFDGCKADLVVCDG-APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDg-apdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
. .....+|.|..|. +|. .|+--+..+||.+|.-+|
T Consensus 172 ~------~ks~~aDaVFLDlPaPw-----------------~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 172 L------IKSLKADAVFLDLPAPW-----------------EAIPHAAKILKDEGGRLC 207 (314)
T ss_pred c------ccccccceEEEcCCChh-----------------hhhhhhHHHhhhcCceEE
Confidence 1 1246899999997 332 234445668888885444
No 228
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.016 Score=58.10 Aligned_cols=73 Identities=29% Similarity=0.508 Sum_probs=56.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~ 108 (316)
.++.+|+||=||-|.|+..||++. .+|+||++.+-+ .+.|++++.+|..+....
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~---------------~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRV---------------KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA 356 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccC---------------CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh
Confidence 467899999999999999999764 589999999842 367788888988764321
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCC
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGL 134 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~ 134 (316)
...+..+|.|+.|. .-+|.
T Consensus 357 -----~~~~~~~d~VvvDP--PR~G~ 375 (432)
T COG2265 357 -----WWEGYKPDVVVVDP--PRAGA 375 (432)
T ss_pred -----ccccCCCCEEEECC--CCCCC
Confidence 12456899999995 35665
No 229
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.50 E-value=0.005 Score=55.35 Aligned_cols=100 Identities=19% Similarity=0.159 Sum_probs=57.1
Q ss_pred CCCeEEEECCCCCH----HHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------------CC---------
Q 021161 41 GVKRVVDLCAAPGS----WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PI--------- 92 (316)
Q Consensus 41 ~~~rVLDLcagPG~----wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------------~i--------- 92 (316)
+.-||...||++|- .+..|.+..... .+...+|+|.|+++.+ .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~--------~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf 102 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGA--------LGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYF 102 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S---------TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHE
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhccc--------CCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhc
Confidence 34699999999994 333444433210 1125799999999731 00
Q ss_pred ---------------CCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcc
Q 021161 93 ---------------EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVL 157 (316)
Q Consensus 93 ---------------~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vL 157 (316)
..|+|.+.|+.+.. ...+.||+|+|-- .=-|...+....++......|
T Consensus 103 ~~~~~~~~~v~~~lr~~V~F~~~NL~~~~--------~~~~~fD~I~CRN---------VlIYF~~~~~~~vl~~l~~~L 165 (196)
T PF01739_consen 103 TERDGGGYRVKPELRKMVRFRRHNLLDPD--------PPFGRFDLIFCRN---------VLIYFDPETQQRVLRRLHRSL 165 (196)
T ss_dssp EEE-CCCTTE-HHHHTTEEEEE--TT-S--------------EEEEEE-S---------SGGGS-HHHHHHHHHHHGGGE
T ss_pred cccCCCceeEChHHcCceEEEecccCCCC--------cccCCccEEEecC---------EEEEeCHHHHHHHHHHHHHHc
Confidence 24677777877721 1236899999962 223444445567788889999
Q ss_pred cCCcEEEE
Q 021161 158 KEGGKFIA 165 (316)
Q Consensus 158 kpGG~fV~ 165 (316)
+|||.|++
T Consensus 166 ~pgG~L~l 173 (196)
T PF01739_consen 166 KPGGYLFL 173 (196)
T ss_dssp EEEEEEEE
T ss_pred CCCCEEEE
Confidence 99999998
No 230
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.50 E-value=0.0028 Score=58.46 Aligned_cols=113 Identities=19% Similarity=0.261 Sum_probs=74.9
Q ss_pred HHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCC-CC------CCCCcE--EEecCccC
Q 021161 34 EEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA------PIEGVI--QVQGDITN 104 (316)
Q Consensus 34 ~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~-~~------~i~gV~--~i~gDIt~ 104 (316)
.-|++-+.-..++|+||+-|..+.+|..+. -.+++-+|.+. |. ..+++. ...+|=..
T Consensus 65 rvfD~kk~fp~a~diGcs~G~v~rhl~~e~--------------vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~ 130 (325)
T KOG2940|consen 65 RVFDCKKSFPTAFDIGCSLGAVKRHLRGEG--------------VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEF 130 (325)
T ss_pred HHHHHhhhCcceeecccchhhhhHHHHhcc--------------hhheeeeecchHHHHHhhccCCCceEEEEEecchhc
Confidence 334444555789999999999888876542 25888999886 31 235553 34556443
Q ss_pred hhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHH
Q 021161 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQ 179 (316)
Q Consensus 105 ~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~ 179 (316)
++ |.+.++|||++..+...+ .++. .-+..+...|||.|.|+..+|.+...-+|...
T Consensus 131 Ld--------f~ens~DLiisSlslHW~--NdLP---------g~m~~ck~~lKPDg~FiasmlggdTLyELR~s 186 (325)
T KOG2940|consen 131 LD--------FKENSVDLIISSLSLHWT--NDLP---------GSMIQCKLALKPDGLFIASMLGGDTLYELRCS 186 (325)
T ss_pred cc--------ccccchhhhhhhhhhhhh--ccCc---------hHHHHHHHhcCCCccchhHHhccccHHHHHHH
Confidence 32 677899999998654322 1111 22345677899999999999998876665543
No 231
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.41 E-value=0.01 Score=60.79 Aligned_cols=80 Identities=13% Similarity=0.005 Sum_probs=46.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC---------CC--CcEEEecCccChhhHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IE--GVIQVQGDITNARTAE 109 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~---------i~--gV~~i~gDIt~~~t~~ 109 (316)
...+|+|.|||+|++...+++++..... ...-...++|+|+++.+- .. +.....+|.......
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~-----~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~- 104 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINY-----FKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLL- 104 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCC-----cccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccc-
Confidence 4569999999999999999888741100 000135789999988530 11 233444443321100
Q ss_pred HHHhhcCCccccEEEeCCC
Q 021161 110 VVIRHFDGCKADLVVCDGA 128 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDga 128 (316)
.... ..+.||+||+|.+
T Consensus 105 -~~~~-~~~~fD~IIgNPP 121 (524)
T TIGR02987 105 -NIES-YLDLFDIVITNPP 121 (524)
T ss_pred -cccc-ccCcccEEEeCCC
Confidence 0000 1247999999964
No 232
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.38 E-value=0.0022 Score=62.50 Aligned_cols=75 Identities=24% Similarity=0.360 Sum_probs=44.2
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhh-HHHH
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART-AEVV 111 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t-~~~I 111 (316)
+||||+||.|.||..|++.. .+|+|||+.+-+ .+.+++++.++..+... ....
T Consensus 199 ~vlDlycG~G~fsl~la~~~---------------~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~ 263 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA---------------KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKA 263 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS---------------SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS
T ss_pred cEEEEeecCCHHHHHHHhhC---------------CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhh
Confidence 89999999999999999765 589999999742 47889999887643210 0000
Q ss_pred Hh-------hcCCccccEEEeCCCCCCCCCC
Q 021161 112 IR-------HFDGCKADLVVCDGAPDVTGLH 135 (316)
Q Consensus 112 ~~-------~~~~~~~DlVvsDgapdvtG~~ 135 (316)
.+ .+....+|+|+.|+ .-+|+.
T Consensus 264 r~~~~~~~~~~~~~~~d~vilDP--PR~G~~ 292 (352)
T PF05958_consen 264 REFNRLKGIDLKSFKFDAVILDP--PRAGLD 292 (352)
T ss_dssp -GGTTGGGS-GGCTTESEEEE-----TT-SC
T ss_pred HHHHhhhhhhhhhcCCCEEEEcC--CCCCch
Confidence 00 01223689999995 456764
No 233
>PRK11524 putative methyltransferase; Provisional
Probab=96.32 E-value=0.023 Score=53.59 Aligned_cols=92 Identities=13% Similarity=0.216 Sum_probs=53.8
Q ss_pred cEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCC----C-CCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTG----L-HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 95 V~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG----~-~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
..+++||..+. ++.+..+++|+|++|.+..... . ...+.......+...+..+.++|||||+|++ ...
T Consensus 9 ~~i~~gD~~~~------l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i-~~~ 81 (284)
T PRK11524 9 KTIIHGDALTE------LKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI-MNS 81 (284)
T ss_pred CEEEeccHHHH------HHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE-EcC
Confidence 35678888763 2346678999999997543210 0 0111111233456788999999999999998 333
Q ss_pred CCCHHHHHHHHHhcC---CceEEecCC
Q 021161 170 GKDTSLLYCQLKLFF---PVVTFAKPK 193 (316)
Q Consensus 170 ~~~~~~l~~~l~~~F---~~V~~~KP~ 193 (316)
......+...++..| ..+...|+.
T Consensus 82 ~~~~~~~~~~~~~~f~~~~~iiW~k~~ 108 (284)
T PRK11524 82 TENMPFIDLYCRKLFTIKSRIVWSYDS 108 (284)
T ss_pred chhhhHHHHHHhcCcceEEEEEEEeCC
Confidence 333333333344433 334455653
No 234
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.0065 Score=61.52 Aligned_cols=60 Identities=22% Similarity=0.371 Sum_probs=47.5
Q ss_pred hhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCC
Q 021161 26 AFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG 94 (316)
Q Consensus 26 a~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~g 94 (316)
|=+|..+-.++--+..+..+||+|||+|-++..++++. .+|+||++++-+ .+.|
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---------------~~ViGvEi~~~aV~dA~~nA~~NgisN 432 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---------------KRVIGVEISPDAVEDAEKNAQINGISN 432 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---------------cceeeeecChhhcchhhhcchhcCccc
Confidence 34555555566666788999999999999999999876 589999999853 2567
Q ss_pred cEEEec
Q 021161 95 VIQVQG 100 (316)
Q Consensus 95 V~~i~g 100 (316)
.+|++|
T Consensus 433 a~Fi~g 438 (534)
T KOG2187|consen 433 ATFIVG 438 (534)
T ss_pred eeeeec
Confidence 889998
No 235
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.31 E-value=0.02 Score=48.82 Aligned_cols=86 Identities=17% Similarity=0.194 Sum_probs=53.9
Q ss_pred EEEEEeCCCCC-----------CC-CCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHH
Q 021161 80 LIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLIL 147 (316)
Q Consensus 80 ~IvaVDl~~~~-----------~i-~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~ 147 (316)
+|+|+|+|+.+ .. .+|+.++..-.+.. +.++.+++|+|+-|..--..|.+.+-.- .+-..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~------~~i~~~~v~~~iFNLGYLPggDk~i~T~--~~TTl 72 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLD------EYIPEGPVDAAIFNLGYLPGGDKSITTK--PETTL 72 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGG------GT--S--EEEEEEEESB-CTS-TTSB----HHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHH------hhCccCCcCEEEEECCcCCCCCCCCCcC--cHHHH
Confidence 58999999864 12 35888887766543 2344458999999965444555554332 23346
Q ss_pred HHHHHHHHcccCCcEEEEEEccCCCH
Q 021161 148 AGLTVVTHVLKEGGKFIAKIFRGKDT 173 (316)
Q Consensus 148 aaL~~a~~vLkpGG~fV~Kif~~~~~ 173 (316)
.|+..++.+|+|||.+++-++.|+.-
T Consensus 73 ~Al~~al~lL~~gG~i~iv~Y~GH~g 98 (140)
T PF06962_consen 73 KALEAALELLKPGGIITIVVYPGHPG 98 (140)
T ss_dssp HHHHHHHHHEEEEEEEEEEE--STCH
T ss_pred HHHHHHHHhhccCCEEEEEEeCCCCC
Confidence 89999999999999999999998753
No 236
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.014 Score=53.18 Aligned_cols=93 Identities=16% Similarity=0.180 Sum_probs=61.7
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------C---------------CCCcEE
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P---------------IEGVIQ 97 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~---------------i~gV~~ 97 (316)
+++|.++||+|.|+|-.|..++.-++. +....+|||+.+.. . -..+.+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~-----------~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGA-----------TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcC-----------CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 579999999999999999998877752 22344899888731 0 123455
Q ss_pred EecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 98 i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
+.||-..-. -+..+||.|.|.++ +..+ ....+..|++||.+++=+
T Consensus 149 vvGDgr~g~--------~e~a~YDaIhvGAa--a~~~---------------pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 149 VVGDGRKGY--------AEQAPYDAIHVGAA--ASEL---------------PQELLDQLKPGGRLLIPV 193 (237)
T ss_pred EeCCccccC--------CccCCcceEEEccC--cccc---------------HHHHHHhhccCCeEEEee
Confidence 666665432 12367888888542 1111 234567899999998754
No 237
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.13 E-value=0.023 Score=54.02 Aligned_cols=100 Identities=19% Similarity=0.111 Sum_probs=59.3
Q ss_pred CCeEEEECCCCCHH----HHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------------CC----------
Q 021161 42 VKRVVDLCAAPGSW----SQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PI---------- 92 (316)
Q Consensus 42 ~~rVLDLcagPG~w----Sq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------------~i---------- 92 (316)
.-||...||++|-= +..+.+.++. ...+.+|+|.|+++.+ .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~---------~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~ 186 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGT---------APGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFM 186 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcc---------cCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcc
Confidence 36999999999953 3333443321 0125789999999731 00
Q ss_pred -----------------CCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Q 021161 93 -----------------EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTH 155 (316)
Q Consensus 93 -----------------~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~ 155 (316)
..|+|.+.|+.+.+ ....+.||+|+|-- +- ++ .+. +....++.....
T Consensus 187 ~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~-------~~~~~~fD~I~cRN---vl-iy-F~~----~~~~~vl~~l~~ 250 (287)
T PRK10611 187 RGTGPHEGLVRVRQELANYVDFQQLNLLAKQ-------WAVPGPFDAIFCRN---VM-IY-FDK----TTQERILRRFVP 250 (287)
T ss_pred cccCCCCceEEEChHHHccCEEEcccCCCCC-------CccCCCcceeeHhh---HH-hc-CCH----HHHHHHHHHHHH
Confidence 01345555555421 01136799999953 11 11 222 234566788899
Q ss_pred cccCCcEEEEE
Q 021161 156 VLKEGGKFIAK 166 (316)
Q Consensus 156 vLkpGG~fV~K 166 (316)
.|+|||.|++-
T Consensus 251 ~L~pgG~L~lG 261 (287)
T PRK10611 251 LLKPDGLLFAG 261 (287)
T ss_pred HhCCCcEEEEe
Confidence 99999998773
No 238
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.88 E-value=0.086 Score=56.08 Aligned_cols=120 Identities=12% Similarity=-0.014 Sum_probs=67.5
Q ss_pred cCCcCCCCeEEEECCCCCHHHHHHHHHhCC--C---CCCCCC-----C----------------C---CCCCCEEEEEeC
Q 021161 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYL--P---AKLSPD-----S----------------R---EGDLPLIVAIDL 86 (316)
Q Consensus 36 f~~~~~~~rVLDLcagPG~wSq~La~~l~~--~---~~~~~~-----~----------------~---~~~~~~IvaVDl 86 (316)
-++.+++..++|.+||+|.+....+..... + ...++. . . .....+|+|+|+
T Consensus 185 a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Di 264 (702)
T PRK11783 185 SGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDI 264 (702)
T ss_pred cCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEEC
Confidence 344457889999999999999877653210 0 000100 0 0 012358999999
Q ss_pred CCCC-----------CCC-CcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHH
Q 021161 87 QPMA-----------PIE-GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVT 154 (316)
Q Consensus 87 ~~~~-----------~i~-gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~ 154 (316)
++.+ .+. .|.+.++|+++... ....+++|+||+|.+ -..-+. ++....+| ...+-..+
T Consensus 265 d~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~------~~~~~~~d~IvtNPP-Yg~r~~--~~~~l~~l-Y~~lg~~l 334 (702)
T PRK11783 265 DPRVIQAARKNARRAGVAELITFEVKDVADLKN------PLPKGPTGLVISNPP-YGERLG--EEPALIAL-YSQLGRRL 334 (702)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEeCChhhccc------ccccCCCCEEEECCC-CcCccC--chHHHHHH-HHHHHHHH
Confidence 9842 233 36788999987531 112347999999963 222111 11111122 23344455
Q ss_pred HcccCCcEEEE
Q 021161 155 HVLKEGGKFIA 165 (316)
Q Consensus 155 ~vLkpGG~fV~ 165 (316)
+.+.+|+.+++
T Consensus 335 k~~~~g~~~~l 345 (702)
T PRK11783 335 KQQFGGWNAAL 345 (702)
T ss_pred HHhCCCCeEEE
Confidence 55557877765
No 239
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.83 E-value=0.032 Score=50.31 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=31.2
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCC
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~ 88 (316)
++++++|+||=.|-|-|+..++..++ +.++|.++=-.+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vg------------p~G~Vy~~~p~e 83 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVG------------PKGKVYAYVPAE 83 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcC------------CceeEEEecchh
Confidence 58999999999999999999999886 456777764333
No 240
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.83 E-value=0.02 Score=53.33 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=51.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------CCCCcEEEecCccChhhHHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~i~gV~~i~gDIt~~~t~~~I 111 (316)
++..|||+|+|+|.||..|+++. .++++||+.+.. ..++++.+.+|+.+.+....
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~---------------~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~- 93 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG---------------KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL- 93 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS---------------SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH-
T ss_pred CCCEEEEeCCCCccchhhHhccc---------------CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh-
Confidence 78899999999999999999875 489999999831 24689999999998654211
Q ss_pred HhhcCCccccEEEeCC
Q 021161 112 IRHFDGCKADLVVCDG 127 (316)
Q Consensus 112 ~~~~~~~~~DlVvsDg 127 (316)
+ .....+|+++.
T Consensus 94 ---~-~~~~~~vv~Nl 105 (262)
T PF00398_consen 94 ---L-KNQPLLVVGNL 105 (262)
T ss_dssp ---C-SSSEEEEEEEE
T ss_pred ---h-cCCceEEEEEe
Confidence 1 24567888875
No 241
>PRK13699 putative methylase; Provisional
Probab=95.39 E-value=0.11 Score=47.70 Aligned_cols=91 Identities=20% Similarity=0.282 Sum_probs=54.6
Q ss_pred EEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCC-----ccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC
Q 021161 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHD-----MDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (316)
Q Consensus 96 ~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~-----~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~ 170 (316)
+.+.||..+ +++.++.+++|+|+.|.+-.. |..+ .......+.....+..+.++|||||.+++ |.+
T Consensus 3 ~l~~gD~le------~l~~lpd~SVDLIiTDPPY~i-~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i--f~~ 73 (227)
T PRK13699 3 RFILGNCID------VMARFPDNAVDFILTDPPYLV-GFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS--FYG 73 (227)
T ss_pred eEEechHHH------HHHhCCccccceEEeCCCccc-ccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE--Eec
Confidence 456777654 455678899999999974332 2111 11111234456788999999999999886 333
Q ss_pred -CCHHHHHHHHHh-cC---CceEEecCCCC
Q 021161 171 -KDTSLLYCQLKL-FF---PVVTFAKPKSS 195 (316)
Q Consensus 171 -~~~~~l~~~l~~-~F---~~V~~~KP~sS 195 (316)
.....++..++. -| ..+...|+...
T Consensus 74 ~~~~~~~~~al~~~GF~l~~~IiW~K~~~~ 103 (227)
T PRK13699 74 WNRVDRFMAAWKNAGFSVVGHLVFTKNYTS 103 (227)
T ss_pred cccHHHHHHHHHHCCCEEeeEEEEECCCCC
Confidence 223444444443 24 34566677643
No 242
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.38 E-value=0.059 Score=52.34 Aligned_cols=97 Identities=28% Similarity=0.228 Sum_probs=70.0
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC---C-CC-CCcEEEecCccChhhHHHHHh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---A-PI-EGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~---~-~i-~gV~~i~gDIt~~~t~~~I~~ 113 (316)
|+.....||+|+|.|..+-.+..+.+ ..+.+-.|+... + .+ +||..+-||.... +
T Consensus 175 f~~v~~avDvGgGiG~v~k~ll~~fp-------------~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~------ 234 (342)
T KOG3178|consen 175 FKGVNVAVDVGGGIGRVLKNLLSKYP-------------HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-T------ 234 (342)
T ss_pred cccCceEEEcCCcHhHHHHHHHHhCC-------------CCceeecCHHHHHhhhhhhcCCcceeccccccc-C------
Confidence 55678999999999999998887542 356666666553 2 26 8999999998864 2
Q ss_pred hcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEc
Q 021161 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (316)
Q Consensus 114 ~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 168 (316)
-+.|+|+.- -+-+.|. |+. +.+.|+.+.+-|+|||.++++-.
T Consensus 235 ----P~~daI~mk---WiLhdwt-Ded-----cvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 235 ----PKGDAIWMK---WILHDWT-DED-----CVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ----CCcCeEEEE---eecccCC-hHH-----HHHHHHHHHHhCCCCCEEEEEec
Confidence 357788763 2333332 332 56789999999999999999854
No 243
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.38 E-value=0.12 Score=39.96 Aligned_cols=95 Identities=26% Similarity=0.304 Sum_probs=58.4
Q ss_pred EEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC--CC---cEEEecCccChhhHHHHHh
Q 021161 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI--EG---VIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 45 VLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i--~g---V~~i~gDIt~~~t~~~I~~ 113 (316)
++|+|||+|.++ .+.+... ....++++|+.+.. .. .+ +.+..+|..... .
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 112 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG------------RGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGV------L 112 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC------------CCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCC------C
Confidence 999999999988 4444332 11478899998731 01 21 467777766520 0
Q ss_pred hcCC-ccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC
Q 021161 114 HFDG-CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (316)
Q Consensus 114 ~~~~-~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~ 170 (316)
.+.. ..+|++ +.... .+..+ ....+..+.++|+|+|.+++.....
T Consensus 113 ~~~~~~~~d~~-~~~~~----~~~~~-------~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 113 PFEDSASFDLV-ISLLV----LHLLP-------PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred CCCCCCceeEE-eeeee----hhcCC-------HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 1333 478999 43211 11111 2355778888999999999877653
No 244
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.24 E-value=0.51 Score=45.27 Aligned_cols=73 Identities=25% Similarity=0.268 Sum_probs=56.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------C-CCCcEEEecCccChhhHH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAE 109 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~-i~gV~~i~gDIt~~~t~~ 109 (316)
+++...||.--|-||.|+.+.++++ ..++++|+|..+.+ + -++++++++...+...
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~------------~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~-- 87 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLP------------DLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAE-- 87 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCC------------CCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHH--
Confidence 5668999999999999999999985 45789999999842 2 2478999998776543
Q ss_pred HHHhhcCCccccEEEeCC
Q 021161 110 VVIRHFDGCKADLVVCDG 127 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDg 127 (316)
.....+-.++|-|+.|.
T Consensus 88 -~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 88 -ALKELGIGKVDGILLDL 104 (314)
T ss_pred -HHHhcCCCceeEEEEec
Confidence 33334456889999884
No 245
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.14 E-value=0.14 Score=46.83 Aligned_cols=147 Identities=18% Similarity=0.150 Sum_probs=82.8
Q ss_pred cHHHHHHHHhCC-chh---hhhhHHhhhHHcCCcCC----CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEE
Q 021161 10 DIYYRKAKEEGW-RAR---SAFKLLQIDEEFNIFEG----VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLI 81 (316)
Q Consensus 10 d~yyr~ak~~g~-raR---sa~KL~qId~~f~~~~~----~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~I 81 (316)
+.|-+ |-..|- +.| |.-.|++-..+...-.. ..++||+||-...-. ++. . .--.|
T Consensus 13 ~~YQ~-AS~~Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~--~s~-~-------------~~fdv 75 (219)
T PF11968_consen 13 EAYQR-ASKQGQSKDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNA--CST-S-------------GWFDV 75 (219)
T ss_pred HHHHH-HHHhcCCCCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCCc--ccc-c-------------Cceee
Confidence 44444 544454 556 56666666555544322 369999998643211 111 1 12469
Q ss_pred EEEeCCCCCCCCCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCc
Q 021161 82 VAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG 161 (316)
Q Consensus 82 vaVDl~~~~~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG 161 (316)
++|||.+.. ++| .+.|..+.+. ..-+.++||+|+|..-.+... +... =-..|..+.++|+|+|
T Consensus 76 t~IDLns~~--~~I--~qqDFm~rpl-----p~~~~e~FdvIs~SLVLNfVP----~p~~----RG~Ml~r~~~fL~~~g 138 (219)
T PF11968_consen 76 TRIDLNSQH--PGI--LQQDFMERPL-----PKNESEKFDVISLSLVLNFVP----DPKQ----RGEMLRRAHKFLKPPG 138 (219)
T ss_pred EEeecCCCC--CCc--eeeccccCCC-----CCCcccceeEEEEEEEEeeCC----CHHH----HHHHHHHHHHHhCCCC
Confidence 999999954 554 5667776431 012357899999986332211 1111 1234778899999999
Q ss_pred E-----EEEEEccC-------CCHHHHHHHHHhc-CCceEEe
Q 021161 162 K-----FIAKIFRG-------KDTSLLYCQLKLF-FPVVTFA 190 (316)
Q Consensus 162 ~-----fV~Kif~~-------~~~~~l~~~l~~~-F~~V~~~ 190 (316)
. |.+-+-.+ .+...+...|... |..++..
T Consensus 139 ~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 139 LSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred ccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEE
Confidence 9 55533211 1344555555554 7777653
No 246
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.00 E-value=0.088 Score=50.55 Aligned_cols=80 Identities=20% Similarity=0.207 Sum_probs=58.8
Q ss_pred hhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------CC-CCcEEEec
Q 021161 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PI-EGVIQVQG 100 (316)
Q Consensus 31 qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~i-~gV~~i~g 100 (316)
|+.+.+.. +++..+||.-+|-||.|..++++++ .++|+|+|.++.+ +. ..++++++
T Consensus 11 Evl~~L~~-~~ggiyVD~TlG~GGHS~~iL~~l~-------------~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~ 76 (305)
T TIGR00006 11 EVVEGLNI-KPDGIYIDCTLGFGGHSKAILEQLG-------------TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHD 76 (305)
T ss_pred HHHHhcCc-CCCCEEEEeCCCChHHHHHHHHhCC-------------CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeC
Confidence 33444432 5678999999999999999999874 3899999999953 12 36888999
Q ss_pred CccChhhHHHHHhhcCCccccEEEeCC
Q 021161 101 DITNARTAEVVIRHFDGCKADLVVCDG 127 (316)
Q Consensus 101 DIt~~~t~~~I~~~~~~~~~DlVvsDg 127 (316)
+..+.. .++...+..++|.|+.|.
T Consensus 77 nF~~l~---~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 77 NFANFF---EHLDELLVTKIDGILVDL 100 (305)
T ss_pred CHHHHH---HHHHhcCCCcccEEEEec
Confidence 887743 233333446799999994
No 247
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.93 E-value=0.075 Score=44.78 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=33.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~ 89 (316)
.+..+|||+|||-|-.+++|+..+.. ...+.+|++||.++.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~---------~~~~~~v~~iD~~~~ 64 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCN---------SSPNLRVLGIDCNES 64 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHh---------cCCCCeEEEEECCcH
Confidence 56789999999999999999996531 124679999999984
No 248
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=94.52 E-value=0.072 Score=59.09 Aligned_cols=99 Identities=21% Similarity=0.277 Sum_probs=60.2
Q ss_pred hcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE-ccCCCH-HHHHHHHHhcCCceEEec
Q 021161 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI-FRGKDT-SLLYCQLKLFFPVVTFAK 191 (316)
Q Consensus 114 ~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki-f~~~~~-~~l~~~l~~~F~~V~~~K 191 (316)
.+.-+.|.+|.||--=-..|- .|-....++..+.+..++.+..+||.+|+|+ |....+ ..++.++..+|..+++.|
T Consensus 564 p~pTGtf~fVYSDVDQV~dg~--~dl~As~r~~~~~l~~~l~~tt~GG~~v~KiNFPT~~vW~~if~~~s~~~~~~~ivK 641 (1289)
T PF06016_consen 564 PFPTGTFTFVYSDVDQVQDGG--DDLVASNRAAISQLDVALQMTTAGGSTVVKINFPTRAVWTQIFRQYSPRFTSYHIVK 641 (1289)
T ss_dssp --S---EEEEEEE-----SST--TTHHHHHHHHHHHHHHHHHHEEEEEEEEEEESS--CCHHHHHHHHCCCCECEEEEEE
T ss_pred CCCCCceEEEEecchhhccCC--cchhhhhHHHHHHHHHHHHhhcCCceEEEEEcCCChHHHHHHHHHhccccceeeEec
Confidence 466789999999952112222 2333456677888999999999999999998 433332 456666777799999999
Q ss_pred CCCCCCCCcceEEEEeccc-CCCCCCC
Q 021161 192 PKSSRNSSIEAFAVCENYF-PPEGFNP 217 (316)
Q Consensus 192 P~sSR~~S~E~fvVc~gf~-~p~~~~p 217 (316)
|--. .|.|.|+| .+.+ ....+.|
T Consensus 642 PlI~--NNvEvflv-~~~~~~~~~~~~ 665 (1289)
T PF06016_consen 642 PLIV--NNVEVFLV-FGGRTPSGNLTP 665 (1289)
T ss_dssp EESS--SS--EEEE-ECECSTT----B
T ss_pred ceee--cceEEEEE-EEeecCCCCCCC
Confidence 9854 46899999 4544 3444444
No 249
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.49 E-value=0.13 Score=48.49 Aligned_cols=99 Identities=24% Similarity=0.213 Sum_probs=62.0
Q ss_pred CCeEEEECCCCC----HHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------C-------C---------
Q 021161 42 VKRVVDLCAAPG----SWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-------I--------- 92 (316)
Q Consensus 42 ~~rVLDLcagPG----~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~-------i--------- 92 (316)
.-||.-.||++| +.+..|.+.++. ..+...+|+|.|++.-. + +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~--------~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF 168 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGK--------LAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYF 168 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhcc--------ccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhE
Confidence 569999999999 455555555531 11235799999999721 0 0
Q ss_pred ---------------CCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcc
Q 021161 93 ---------------EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVL 157 (316)
Q Consensus 93 ---------------~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vL 157 (316)
..|.|-+.|..+.+ +..+.||+|+|- +|- --.|+..|. .+++.-...|
T Consensus 169 ~~~~~~~y~v~~~ir~~V~F~~~NLl~~~--------~~~~~fD~IfCR---NVL--IYFd~~~q~----~il~~f~~~L 231 (268)
T COG1352 169 ERGGDGSYRVKEELRKMVRFRRHNLLDDS--------PFLGKFDLIFCR---NVL--IYFDEETQE----RILRRFADSL 231 (268)
T ss_pred eecCCCcEEEChHHhcccEEeecCCCCCc--------cccCCCCEEEEc---ceE--EeeCHHHHH----HHHHHHHHHh
Confidence 01444455555432 123579999995 221 113555454 4467778899
Q ss_pred cCCcEEEE
Q 021161 158 KEGGKFIA 165 (316)
Q Consensus 158 kpGG~fV~ 165 (316)
+|||.|++
T Consensus 232 ~~gG~Lfl 239 (268)
T COG1352 232 KPGGLLFL 239 (268)
T ss_pred CCCCEEEE
Confidence 99999988
No 250
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.40 E-value=0.48 Score=41.45 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=70.8
Q ss_pred ECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------C----------CCCcEEEe-cCccChhhHHH
Q 021161 48 LCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----------IEGVIQVQ-GDITNARTAEV 110 (316)
Q Consensus 48 LcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~----------i~gV~~i~-gDIt~~~t~~~ 110 (316)
+|-|-=|||..|++..+ ....|+|--+.... + -.|++++. -|.|+.....
T Consensus 3 vGeGdfSFs~sL~~~~~------------~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~- 69 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFG------------SATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHF- 69 (166)
T ss_pred eeccchHHHHHHHHHcC------------CCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccc-
Confidence 56777788888888774 13567776655431 1 23665554 3888754311
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHH--HHHHHHHHHHHHHHHcccCCcEEEEEEccCCC
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEF--VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~--~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~ 172 (316)
.+...+||.|+=+.+-...|..+.... ...+|+...+..|..+|+++|.+.+.+..+..
T Consensus 70 ---~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 70 ---RLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred ---cccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 125688999999863222122222222 23457888999999999999999998887743
No 251
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.33 E-value=0.28 Score=46.23 Aligned_cols=123 Identities=13% Similarity=0.135 Sum_probs=60.9
Q ss_pred CCCeEEEECCCC--CHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------CCCC--cEEEecCccChhh
Q 021161 41 GVKRVVDLCAAP--GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEG--VIQVQGDITNART 107 (316)
Q Consensus 41 ~~~rVLDLcagP--G~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~i~g--V~~i~gDIt~~~t 107 (316)
+...+||||||= -+..-.++++.. ++++||=||..|+. .-++ ..++++|++++..
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~------------P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~ 135 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVA------------PDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEA 135 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-------------TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhC------------CCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHH
Confidence 568999999982 223334556553 57899999999962 2244 6789999999875
Q ss_pred HHH---HHhhcC-CccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhc
Q 021161 108 AEV---VIRHFD-GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 183 (316)
Q Consensus 108 ~~~---I~~~~~-~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~ 183 (316)
+-. +...++ .+++=+++...-.- +.+.+. ....+......|.||..+++..+.......-...+...
T Consensus 136 iL~~p~~~~~lD~~rPVavll~~vLh~---v~D~~d------p~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~ 206 (267)
T PF04672_consen 136 ILAHPEVRGLLDFDRPVAVLLVAVLHF---VPDDDD------PAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAV 206 (267)
T ss_dssp HHCSHHHHCC--TTS--EEEECT-GGG---S-CGCT------HHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHH
T ss_pred HhcCHHHHhcCCCCCCeeeeeeeeecc---CCCccC------HHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHH
Confidence 321 222333 35555655432111 112111 13456667889999999999888765433333333333
Q ss_pred C
Q 021161 184 F 184 (316)
Q Consensus 184 F 184 (316)
|
T Consensus 207 ~ 207 (267)
T PF04672_consen 207 Y 207 (267)
T ss_dssp H
T ss_pred H
Confidence 3
No 252
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.31 E-value=0.049 Score=53.56 Aligned_cols=80 Identities=29% Similarity=0.410 Sum_probs=59.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CCCC---cEEEecCccChhhH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEG---VIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i~g---V~~i~gDIt~~~t~ 108 (316)
.+|.+|+|.||+||-.+.+++..+. +.++|.|+|+.+-. .+.| +..+.+|.+...+-
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~------------n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~ 279 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMR------------NQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATP 279 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhh------------ccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCc
Confidence 4578999999999999999998885 46899999999842 1333 44457787774321
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCc
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDM 137 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~ 137 (316)
. .+ +.+-.|++|.++..+|+|..
T Consensus 280 ~----~~--~~v~~iL~DpscSgSgm~~r 302 (413)
T KOG2360|consen 280 E----KF--RDVTYILVDPSCSGSGMVSR 302 (413)
T ss_pred c----cc--cceeEEEeCCCCCCCccccc
Confidence 1 12 46889999998888888753
No 253
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.12 E-value=0.06 Score=50.64 Aligned_cols=98 Identities=19% Similarity=0.301 Sum_probs=59.7
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCCCcEEEecCccChhhHHHHHhhcC
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFD 116 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~gV~~i~gDIt~~~t~~~I~~~~~ 116 (316)
.+|+||+||.|+.+.-+.+.. --.|+++|+.+.+ ..++. .+.+||++..... +
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G--------------~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~-----~- 59 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAG--------------FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKD-----F- 59 (275)
T ss_pred CcEEEEccCcchHHHHHHHcC--------------CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhh-----c-
Confidence 379999999999998886532 1357899999853 23443 5788998865321 1
Q ss_pred CccccEEEeCCCCCCCCCC------CccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 117 GCKADLVVCDGAPDVTGLH------DMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 117 ~~~~DlVvsDgapdvtG~~------~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
...+|+|+.+.. |+|.. ..+. -...|....+.++ +.++|- .|++.
T Consensus 60 ~~~~D~l~~gpP--Cq~fS~ag~~~~~~d-~r~~L~~~~~~~i-~~~~P~-~~v~E 110 (275)
T cd00315 60 IPDIDLLTGGFP--CQPFSIAGKRKGFED-TRGTLFFEIIRIL-KEKKPK-YFLLE 110 (275)
T ss_pred CCCCCEEEeCCC--ChhhhHHhhcCCCCC-chHHHHHHHHHHH-HhcCCC-EEEEE
Confidence 246999997643 43321 1111 1234555555544 445776 45544
No 254
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.04 E-value=0.025 Score=53.06 Aligned_cols=95 Identities=25% Similarity=0.423 Sum_probs=57.3
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCCCcEEEecCccChhhHHHHHhhcCC
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFDG 117 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~gV~~i~gDIt~~~t~~~I~~~~~~ 117 (316)
+|+||+||-||++.-+.+... -.|.|+|+.+.+ ..+ ....+||++.... .++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~--------------~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~-----~l~~ 60 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGF--------------EVVWAVEIDPDACETYKANFP--EVICGDITEIDPS-----DLPK 60 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTE--------------EEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHH-----HHHH
T ss_pred cEEEEccCccHHHHHHHhcCc--------------EEEEEeecCHHHHHhhhhccc--ccccccccccccc-----cccc
Confidence 799999999999998876431 267899999964 234 7789999997643 2332
Q ss_pred ccccEEEeCCCCCCCCCCCc-------cHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 118 CKADLVVCDGAPDVTGLHDM-------DEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 118 ~~~DlVvsDgapdvtG~~~~-------de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
.+|+++.- |.|++.... |+ ...|....+.++ ..++|. .|++.
T Consensus 61 -~~D~l~gg--pPCQ~fS~ag~~~~~~d~--r~~L~~~~~~~v-~~~~Pk-~~~~E 109 (335)
T PF00145_consen 61 -DVDLLIGG--PPCQGFSIAGKRKGFDDP--RNSLFFEFLRIV-KELKPK-YFLLE 109 (335)
T ss_dssp -T-SEEEEE-----TTTSTTSTHHCCCCH--TTSHHHHHHHHH-HHHS-S-EEEEE
T ss_pred -cceEEEec--cCCceEeccccccccccc--cchhhHHHHHHH-hhccce-EEEec
Confidence 59998864 445553221 21 124555555444 567886 45544
No 255
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.91 E-value=0.19 Score=49.01 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=73.8
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCCC---------------CC-----cEEE
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI---------------EG-----VIQV 98 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~i---------------~g-----V~~i 98 (316)
.++|.-|.|==.||||+....++. ++.|+|-|+.-+.-. .| +.++
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~F---------------Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl 270 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHF---------------GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVL 270 (421)
T ss_pred cCCCCEEecCccccCceeeehhhh---------------cceeeccccchheeecccCCCcchhHhHHHhCCcchhhhee
Confidence 378999999999999988766654 268888888874311 01 3457
Q ss_pred ecCccChhhHHHHHhhcCCccccEEEeCCCCCC------C--------------CCC--CccHHHHHHHHHHHHHHHHHc
Q 021161 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDV------T--------------GLH--DMDEFVQSQLILAGLTVVTHV 156 (316)
Q Consensus 99 ~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdv------t--------------G~~--~~de~~~~~L~~aaL~~a~~v 156 (316)
.+|.++... ++ ...||.||||.+-.+ + +.| ....|....++...|..+.++
T Consensus 271 ~~D~sn~~~----rs---n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~ 343 (421)
T KOG2671|consen 271 TADFSNPPL----RS---NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRR 343 (421)
T ss_pred eecccCcch----hh---cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhh
Confidence 889888752 22 468999999963211 1 111 123444455667889999999
Q ss_pred ccCCcEEEEEE
Q 021161 157 LKEGGKFIAKI 167 (316)
Q Consensus 157 LkpGG~fV~Ki 167 (316)
|..||++|+-+
T Consensus 344 L~~ggrlv~w~ 354 (421)
T KOG2671|consen 344 LVDGGRLVFWL 354 (421)
T ss_pred hhcCceEEEec
Confidence 99999999843
No 256
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.87 E-value=0.28 Score=49.95 Aligned_cols=134 Identities=17% Similarity=0.171 Sum_probs=70.1
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCCC------CCcEEEecCccChhhHHHHHhhc
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI------EGVIQVQGDITNARTAEVVIRHF 115 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~i------~gV~~i~gDIt~~~t~~~I~~~~ 115 (316)
-..|+|..||.|||+.+|.+. ..-|.-|=.....+- .|..-+.-|.... ...+
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~---------------~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~------fsTY 424 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD---------------PVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEA------FSTY 424 (506)
T ss_pred eeeeeeecccccHHHHHhccC---------------CceEEEecccCCCCcchhhhhcccchhccchhhc------cCCC
Confidence 468999999999999888642 122222211111111 1322222243321 1112
Q ss_pred CCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhcCCceEEecCCCC
Q 021161 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSS 195 (316)
Q Consensus 116 ~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~F~~V~~~KP~sS 195 (316)
..++|||.+++-+... . ....+...|.+.=++|||||.+++.-.. .-+..+...+..+=-++++..- ..
T Consensus 425 -PRTYDLlHA~~lfs~~--~------~rC~~~~illEmDRILRP~G~~iiRD~~-~vl~~v~~i~~~lrW~~~~~d~-e~ 493 (506)
T PF03141_consen 425 -PRTYDLLHADGLFSLY--K------DRCEMEDILLEMDRILRPGGWVIIRDTV-DVLEKVKKIAKSLRWEVRIHDT-ED 493 (506)
T ss_pred -Ccchhheehhhhhhhh--c------ccccHHHHHHHhHhhcCCCceEEEeccH-HHHHHHHHHHHhCcceEEEEec-CC
Confidence 3789999999743211 1 1123356677888999999999884211 1112222333332223444322 22
Q ss_pred CCCCcceEEEEe
Q 021161 196 RNSSIEAFAVCE 207 (316)
Q Consensus 196 R~~S~E~fvVc~ 207 (316)
-+...|..++|+
T Consensus 494 g~~~~EkiL~~~ 505 (506)
T PF03141_consen 494 GPDGPEKILICQ 505 (506)
T ss_pred CCCCCceEEEEE
Confidence 234478999986
No 257
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=93.44 E-value=0.099 Score=43.31 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=37.7
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccCh
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNA 105 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~ 105 (316)
.|+|+||+.|.++..+++..+ ..+|+++|.++.. .++++++++..+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-------------~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-------------EGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-------------CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 489999999999999987653 4699999999842 234577777777653
No 258
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=93.44 E-value=0.24 Score=46.67 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=32.8
Q ss_pred HHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC
Q 021161 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (316)
Q Consensus 29 L~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~ 89 (316)
|.||.....-|++ .+|||+|||||.-+-++.+..+ .-..+++||.++.
T Consensus 22 l~El~~r~p~f~P-~~vLD~GsGpGta~wAa~~~~~------------~~~~~~~vd~s~~ 69 (274)
T PF09243_consen 22 LSELRKRLPDFRP-RSVLDFGSGPGTALWAAREVWP------------SLKEYTCVDRSPE 69 (274)
T ss_pred HHHHHHhCcCCCC-ceEEEecCChHHHHHHHHHHhc------------CceeeeeecCCHH
Confidence 4455444433444 5899999999987766666553 2347899999984
No 259
>PRK10742 putative methyltransferase; Provisional
Probab=93.44 E-value=0.15 Score=47.63 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=49.2
Q ss_pred CCCC--eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------C----------C-CCcEE
Q 021161 40 EGVK--RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P----------I-EGVIQ 97 (316)
Q Consensus 40 ~~~~--rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~----------i-~gV~~ 97 (316)
+++. +|||+.||.|.-+.+++.+. ++|++||.++.. . + .+++.
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G---------------~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l 149 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVG---------------CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcC---------------CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEE
Confidence 4555 89999999999999999763 679999999841 0 1 24556
Q ss_pred EecCccChhhHHHHHhhcCCccccEEEeCCCCC
Q 021161 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPD 130 (316)
Q Consensus 98 i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapd 130 (316)
+++|..+. +.... ..||+|..|.+..
T Consensus 150 ~~~da~~~------L~~~~-~~fDVVYlDPMfp 175 (250)
T PRK10742 150 IHASSLTA------LTDIT-PRPQVVYLDPMFP 175 (250)
T ss_pred EeCcHHHH------HhhCC-CCCcEEEECCCCC
Confidence 66765542 22233 4799999998643
No 260
>PRK08177 short chain dehydrogenase; Provisional
Probab=92.97 E-value=2 Score=38.09 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=54.2
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----CCCCcEEEecCccChhhHHHHHhhcCCc
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----~i~gV~~i~gDIt~~~t~~~I~~~~~~~ 118 (316)
+||=.|+ .|+....+++++.. .+.+|++++.++.. ...++.+.++|+++.+....+.+.+.++
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 70 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLE-----------RGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQ 70 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHh-----------CCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcC
Confidence 4555554 67888888888752 24689999988743 2346788899999988877777776656
Q ss_pred cccEEEeCCC
Q 021161 119 KADLVVCDGA 128 (316)
Q Consensus 119 ~~DlVvsDga 128 (316)
.+|.|+...+
T Consensus 71 ~id~vi~~ag 80 (225)
T PRK08177 71 RFDLLFVNAG 80 (225)
T ss_pred CCCEEEEcCc
Confidence 8999998853
No 261
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=92.94 E-value=0.16 Score=45.94 Aligned_cols=96 Identities=23% Similarity=0.247 Sum_probs=58.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--C------CCC--cEEEecCccChhhHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P------IEG--VIQVQGDITNARTAEV 110 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--~------i~g--V~~i~gDIt~~~t~~~ 110 (316)
.|++|||+|+|+|--+.+.++.. ...|++.|+.|.. . ..| +.+...|+.-
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG--------------A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g------ 138 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG--------------AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG------ 138 (218)
T ss_pred ccceeeecccccChHHHHHHHhh--------------hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC------
Confidence 47899999999998776666543 2578888887742 1 123 3344455543
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHH
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 174 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~ 174 (316)
....+|+|+.. |+.-.|.. ...| .-....|+..|.-|+ ++.+...-
T Consensus 139 -----~~~~~Dl~Lag---Dlfy~~~~----a~~l-----~~~~~~l~~~g~~vl-vgdp~R~~ 184 (218)
T COG3897 139 -----SPPAFDLLLAG---DLFYNHTE----ADRL-----IPWKDRLAEAGAAVL-VGDPGRAY 184 (218)
T ss_pred -----CCcceeEEEee---ceecCchH----HHHH-----HHHHHHHHhCCCEEE-EeCCCCCC
Confidence 34679999963 34333321 1122 225666777777777 77655433
No 262
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.67 E-value=0.63 Score=45.11 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=64.8
Q ss_pred cCCCCeEEEECCCCCHHHHHH-HHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCcEEEecCcc--Chh-hHHH
Q 021161 39 FEGVKRVVDLCAAPGSWSQVL-SRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDIT--NAR-TAEV 110 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~L-a~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt--~~~-t~~~ 110 (316)
++.|.+||=|||||=|...-+ ++.++ ..+||.+|+.+.+ .--|.+.+.-+-. +.. ....
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~G-------------A~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~ 233 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMG-------------ASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAEL 233 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcC-------------CCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHH
Confidence 367899999999997766555 45554 4699999999853 1234433221111 222 2233
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCC
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~ 171 (316)
+...+....+|+++ +++|.+ ..++.+...||.||++|+--+.++
T Consensus 234 v~~~~g~~~~d~~~-----dCsG~~------------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 234 VEKALGKKQPDVTF-----DCSGAE------------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred HHhhccccCCCeEE-----EccCch------------HHHHHHHHHhccCCEEEEeccCCC
Confidence 44445556688877 577763 235677889999999777555443
No 263
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=92.33 E-value=1.5 Score=39.71 Aligned_cols=105 Identities=17% Similarity=0.292 Sum_probs=73.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCCCcEEEecCccChhhHHHHHhh
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
....|++.|..-||-....+.-+.+ .+...+|+++|+.--. ..++|.+++|+-+++..+.++...
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s---------~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~ 139 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMIS---------IGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRL 139 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHh---------cCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHH
Confidence 3468999999999977776665431 1245788888877532 268999999999999988888765
Q ss_pred cCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 115 ~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
-.+.+-=+|+.|. .|..+ -.++.|+.-..+|.-|-.+|+.
T Consensus 140 ~~~y~kIfvilDs------dHs~~------hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 140 KNEYPKIFVILDS------DHSME------HVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred hcCCCcEEEEecC------CchHH------HHHHHHHHhhhHhhcCceEEEe
Confidence 4444444555552 23222 2467788888888888888774
No 264
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.25 E-value=0.77 Score=47.20 Aligned_cols=131 Identities=15% Similarity=0.177 Sum_probs=77.5
Q ss_pred CCCCcHHHHHHHHhCCchhhhhhHHhhhHHcCC-c---------CCCCeEEEECCCCCHHHHHH-HHHhCCCCCCCCCCC
Q 021161 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNI-F---------EGVKRVVDLCAAPGSWSQVL-SRKLYLPAKLSPDSR 74 (316)
Q Consensus 6 ~~~rd~yyr~ak~~g~raRsa~KL~qId~~f~~-~---------~~~~rVLDLcagPG~wSq~L-a~~l~~~~~~~~~~~ 74 (316)
.++.|.+...+.-.|||+ .++--..|.. + .++.+|+=+|||+=|..... ++.++
T Consensus 124 aq~~d~lssma~IAGy~A-----v~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lG---------- 188 (509)
T PRK09424 124 AQSLDALSSMANIAGYRA-----VIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLG---------- 188 (509)
T ss_pred CCCcccccchhhhhHHHH-----HHHHHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCC----------
Confidence 366799999999999986 3333333332 1 36889999999998776654 45553
Q ss_pred CCCCCEEEEEeCCCCC----CCCCcEEEecCccC-------------hhhHHHHHhhcCC--ccccEEEeCCCCCCCCCC
Q 021161 75 EGDLPLIVAIDLQPMA----PIEGVIQVQGDITN-------------ARTAEVVIRHFDG--CKADLVVCDGAPDVTGLH 135 (316)
Q Consensus 75 ~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt~-------------~~t~~~I~~~~~~--~~~DlVvsDgapdvtG~~ 135 (316)
+.|+++|+.+.. .--|.+++.-|..+ ....+...+.+.+ ..+|+|+.- .|..
T Consensus 189 ----A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIet-----ag~p 259 (509)
T PRK09424 189 ----AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITT-----ALIP 259 (509)
T ss_pred ----CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEEC-----CCCC
Confidence 589999999842 12355543322221 1111112222221 469999964 3321
Q ss_pred CccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 136 DMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 136 ~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
..... ....+.+...+||||++|.-
T Consensus 260 g~~aP------~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 260 GKPAP------KLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred cccCc------chHHHHHHHhcCCCCEEEEE
Confidence 11000 01136788999999998864
No 265
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.19 E-value=0.25 Score=39.96 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHhhcCCccccEEEeCC
Q 021161 52 PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127 (316)
Q Consensus 52 PG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDg 127 (316)
-|.+...+++.++ .+|+++|.++.. .--|.+.+ -|..+.+..++|.+...+..+|+|+
T Consensus 2 vG~~a~q~ak~~G--------------~~vi~~~~~~~k~~~~~~~Ga~~~-~~~~~~~~~~~i~~~~~~~~~d~vi--- 63 (130)
T PF00107_consen 2 VGLMAIQLAKAMG--------------AKVIATDRSEEKLELAKELGADHV-IDYSDDDFVEQIRELTGGRGVDVVI--- 63 (130)
T ss_dssp HHHHHHHHHHHTT--------------SEEEEEESSHHHHHHHHHTTESEE-EETTTSSHHHHHHHHTTTSSEEEEE---
T ss_pred hHHHHHHHHHHcC--------------CEEEEEECCHHHHHHHHhhccccc-ccccccccccccccccccccceEEE---
Confidence 3667777777763 799999988732 11233221 2334444566777777777899998
Q ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC
Q 021161 128 APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (316)
Q Consensus 128 apdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~ 170 (316)
+++|. ...+..+..+|++||++++--+.+
T Consensus 64 --d~~g~------------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 64 --DCVGS------------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp --ESSSS------------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred --EecCc------------HHHHHHHHHHhccCCEEEEEEccC
Confidence 45553 135678899999999999854443
No 266
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=92.05 E-value=0.85 Score=44.45 Aligned_cols=111 Identities=18% Similarity=0.195 Sum_probs=60.9
Q ss_pred cCCCCeEEEECCCC-CHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----CCCCcEEEecCccChhhHHHHH
Q 021161 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 39 ~~~~~rVLDLcagP-G~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----~i~gV~~i~gDIt~~~t~~~I~ 112 (316)
+.++.+||.+|+|+ |..+..+++..+ ..+|+++|.++.. ...++..+...-.+ .....+.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g-------------~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~-~~~~~l~ 247 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLG-------------AERVIAIDRVPERLEMARSHLGAETINFEEVD-DVVEALR 247 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCEEEEEcCCHHHHHHHHHcCCcEEEcCCcch-HHHHHHH
Confidence 46788999998876 667666777653 2369999887632 12244433222111 2334455
Q ss_pred hhcCCccccEEEeCCCCCCCC--CCCccHHHHHHH-----HHHHHHHHHHcccCCcEEEEE
Q 021161 113 RHFDGCKADLVVCDGAPDVTG--LHDMDEFVQSQL-----ILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 113 ~~~~~~~~DlVvsDgapdvtG--~~~~de~~~~~L-----~~aaL~~a~~vLkpGG~fV~K 166 (316)
+...+..+|+|+.-....... .+.. .+.-| -..++..+.++|++||+++.-
T Consensus 248 ~~~~~~~~D~vld~vg~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 248 ELTGGRGPDVCIDAVGMEAHGSPLHKA---EQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred HHcCCCCCCEEEECCCCcccccccccc---cccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 545555799998532111000 0000 00000 023467778899999999874
No 267
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.67 E-value=1.6 Score=42.30 Aligned_cols=100 Identities=20% Similarity=0.254 Sum_probs=63.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----CCCCcEEEecCccChhhHHHHHhhc
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRHF 115 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----~i~gV~~i~gDIt~~~t~~~I~~~~ 115 (316)
++.+|+=+||||=|...+++.+.. ...+|+++|+++.. ..-+...+.-.-.+ .....+.+..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~------------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-~~~~~~~~~t 234 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLL------------GASVVIVVDRSPERLELAKEAGGADVVVNPSED-DAGAEILELT 234 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc------------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccc-cHHHHHHHHh
Confidence 344999999999776655544442 24689999998842 12233322222111 2233344444
Q ss_pred CCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC
Q 021161 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (316)
Q Consensus 116 ~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~ 170 (316)
.+..+|+|+ +++|. ..++..+..++++||++++-=..+
T Consensus 235 ~g~g~D~vi-----e~~G~------------~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 235 GGRGADVVI-----EAVGS------------PPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CCCCCCEEE-----ECCCC------------HHHHHHHHHHhcCCCEEEEEeccC
Confidence 556799998 57772 236788999999999999754433
No 268
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.65 E-value=1.4 Score=40.31 Aligned_cols=77 Identities=17% Similarity=0.058 Sum_probs=53.9
Q ss_pred CCCeEEEECCCC-CHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------CCCCcEEEecCccChhhHHH
Q 021161 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 41 ~~~rVLDLcagP-G~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~i~gV~~i~gDIt~~~t~~~ 110 (316)
.++++|=.|++. ++.-..+++++.. .+.+|+.++..... .+..+..++.|+++.+..+.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~-----------~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 77 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRA-----------LGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEA 77 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH-----------cCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHH
Confidence 467899999998 4899999888742 24678877776421 12345678899999887665
Q ss_pred HHhhcC--CccccEEEeCCC
Q 021161 111 VIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDga 128 (316)
+.+... -++.|+++++.+
T Consensus 78 ~~~~~~~~~g~ld~lv~nAg 97 (258)
T PRK07533 78 VFARIAEEWGRLDFLLHSIA 97 (258)
T ss_pred HHHHHHHHcCCCCEEEEcCc
Confidence 554321 147999999864
No 269
>PRK07806 short chain dehydrogenase; Provisional
Probab=91.50 E-value=1 Score=40.43 Aligned_cols=75 Identities=13% Similarity=0.016 Sum_probs=48.7
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-------C----CCcEEEecCccChhhHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------I----EGVIQVQGDITNARTAEV 110 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-------i----~gV~~i~gDIt~~~t~~~ 110 (316)
+.++|=.|+ +|+.-..+++.+.. .+.+|++++.+.... + ..+.++++|+++......
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 73 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAG-----------AGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAA 73 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHH-----------CCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 467887775 56788888887641 245788877654211 1 246788999999887655
Q ss_pred HHhhcC--CccccEEEeCCC
Q 021161 111 VIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDga 128 (316)
+.+... .+.+|.|+.+.+
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag 93 (248)
T PRK07806 74 LMDTAREEFGGLDALVLNAS 93 (248)
T ss_pred HHHHHHHhCCCCcEEEECCC
Confidence 544321 136899888754
No 270
>PRK06179 short chain dehydrogenase; Provisional
Probab=91.22 E-value=5.2 Score=36.34 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=54.2
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC--CCCCCcEEEecCccChhhHHHHHhhc--CC
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--APIEGVIQVQGDITNARTAEVVIRHF--DG 117 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~--~~i~gV~~i~gDIt~~~t~~~I~~~~--~~ 117 (316)
+.+||=.| |+|+....+++++.. .+.+|++++..+. ....+++++++|+++...++.+++.. ..
T Consensus 4 ~~~vlVtG-asg~iG~~~a~~l~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 71 (270)
T PRK06179 4 SKVALVTG-ASSGIGRATAEKLAR-----------AGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIARA 71 (270)
T ss_pred CCEEEEec-CCCHHHHHHHHHHHH-----------CCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHHhC
Confidence 35677777 568889999888742 3468888887753 23568899999999988766555432 12
Q ss_pred ccccEEEeCCCC
Q 021161 118 CKADLVVCDGAP 129 (316)
Q Consensus 118 ~~~DlVvsDgap 129 (316)
+.+|+|+.+.+.
T Consensus 72 g~~d~li~~ag~ 83 (270)
T PRK06179 72 GRIDVLVNNAGV 83 (270)
T ss_pred CCCCEEEECCCC
Confidence 469999998754
No 271
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=90.63 E-value=0.7 Score=44.52 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=49.9
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------C-CCCcEEEecCccChhhH
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTA 108 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~-i~gV~~i~gDIt~~~t~ 108 (316)
.+++..+||.--|-||.|+.+.++++ +++|+|+|..+.+ + -.++.+++++..+...
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~-------------~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~- 83 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLP-------------NGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDE- 83 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-T-------------T-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHH-
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCC-------------CCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHH-
Confidence 36778999999999999999999884 4899999999843 1 2468999999877543
Q ss_pred HHHHhhc-CCccccEEEeCC
Q 021161 109 EVVIRHF-DGCKADLVVCDG 127 (316)
Q Consensus 109 ~~I~~~~-~~~~~DlVvsDg 127 (316)
++... ...++|-|+.|.
T Consensus 84 --~l~~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 84 --YLKELNGINKVDGILFDL 101 (310)
T ss_dssp --HHHHTTTTS-EEEEEEE-
T ss_pred --HHHHccCCCccCEEEEcc
Confidence 34444 556899999994
No 272
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=90.23 E-value=1 Score=42.28 Aligned_cols=72 Identities=17% Similarity=0.098 Sum_probs=55.9
Q ss_pred hHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC--------C---CCcE
Q 021161 28 KLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------I---EGVI 96 (316)
Q Consensus 28 KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~--------i---~gV~ 96 (316)
.|++..++.+++.+...+|++|||-|..|.++++.+... ......++.||...... . +.+.
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~--------~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~ 76 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQED--------KPSNSRFVLIDRASNRHKADNKIRKDESEPKFE 76 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhc--------ccCCccEEEEecCcccccchhhhhccCCCCceE
Confidence 478888999999999999999999999999999987421 12356899999976421 1 2467
Q ss_pred EEecCccChhh
Q 021161 97 QVQGDITNART 107 (316)
Q Consensus 97 ~i~gDIt~~~t 107 (316)
-+..||.+...
T Consensus 77 R~riDI~dl~l 87 (259)
T PF05206_consen 77 RLRIDIKDLDL 87 (259)
T ss_pred EEEEEeeccch
Confidence 78899998763
No 273
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.09 E-value=1.5 Score=42.13 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=55.9
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCC-EEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~-~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~ 113 (316)
++++.+||=.|+ |+..+.+.+.... .+. +|+++|.++.. .--|...+ -|..+....+.+.+
T Consensus 174 ~~~g~~VlV~G~--g~vG~~a~~~ak~-----------~G~~~Vi~~~~~~~~~~~~~~~Ga~~~-i~~~~~~~~~~i~~ 239 (358)
T TIGR03451 174 VKRGDSVAVIGC--GGVGDAAIAGAAL-----------AGASKIIAVDIDDRKLEWAREFGATHT-VNSSGTDPVEAIRA 239 (358)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCeEEEEcCCHHHHHHHHHcCCceE-EcCCCcCHHHHHHH
Confidence 467889998875 6666655433210 124 59999887632 11233211 12333334445555
Q ss_pred hcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 114 ~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
...+..+|+|+ |++|.. .++..+...|++||++|+-
T Consensus 240 ~~~~~g~d~vi-----d~~g~~------------~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 240 LTGGFGADVVI-----DAVGRP------------ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred HhCCCCCCEEE-----ECCCCH------------HHHHHHHHHhccCCEEEEE
Confidence 55556799998 344431 2345567899999999873
No 274
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=90.08 E-value=0.23 Score=48.90 Aligned_cols=96 Identities=23% Similarity=0.201 Sum_probs=64.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-----------CC-CcEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IE-GVIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-----------i~-gV~~i~gDIt~~~t 107 (316)
.++..++|++||-|+.+.+++..- ...++++|.++... +. .-.++.+|+-+..
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~--------------~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~- 173 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK--------------KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP- 173 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc--------------cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-
Confidence 566799999999999999887653 36788899887421 11 1223445555432
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEc
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 168 (316)
|++..||.|-+-= + +.|-.+ ...++..+.++++|||.++++.+
T Consensus 174 -------fedn~fd~v~~ld---~-~~~~~~-------~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 174 -------FEDNTFDGVRFLE---V-VCHAPD-------LEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred -------CCccccCcEEEEe---e-cccCCc-------HHHHHHHHhcccCCCceEEeHHH
Confidence 5667888887642 1 122223 24668889999999999999654
No 275
>KOG2730 consensus Methylase [General function prediction only]
Probab=89.79 E-value=0.51 Score=43.50 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=45.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------C---CC-CcEEEecCccChhhH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---IE-GVIQVQGDITNARTA 108 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~---i~-gV~~i~gDIt~~~t~ 108 (316)
....|||--||-||-+...+.+. +.|++||+.|.. . ++ .|+++|||+.+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---------------~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~-- 156 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---------------PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLA-- 156 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---------------CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHH--
Confidence 34577887777777666655543 689999999952 1 22 5899999998743
Q ss_pred HHHHhhcCCccccEEEeCCC
Q 021161 109 EVVIRHFDGCKADLVVCDGA 128 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDga 128 (316)
..+ .+....+|+|...+.
T Consensus 157 ~~l--q~~K~~~~~vf~spp 174 (263)
T KOG2730|consen 157 SKL--KADKIKYDCVFLSPP 174 (263)
T ss_pred HHH--hhhhheeeeeecCCC
Confidence 221 123345788886654
No 276
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=89.58 E-value=1.2 Score=38.54 Aligned_cols=99 Identities=22% Similarity=0.198 Sum_probs=56.3
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC----CCCcEEEecCccChhhHHHHHhhcCCc
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFDGC 118 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~----i~gV~~i~gDIt~~~t~~~I~~~~~~~ 118 (316)
.-|+|||=|-|--=.+|.+.++ +-.|+++|..--.. .+--.+++|||.+ |+.. ...+ +.
T Consensus 30 G~VlElGLGNGRTydHLRe~~p-------------~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~--tl~~-~~~~-g~ 92 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFP-------------DRRIYVFDRALACHPSSTPPEEDLILGDIRE--TLPA-LARF-GA 92 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH---------------SS-EEEEESS--S-GGG---GGGEEES-HHH--HHHH-HHHH--S
T ss_pred CceEEeccCCCccHHHHHHhCC-------------CCeEEEEeeecccCCCCCCchHheeeccHHH--HhHH-HHhc-CC
Confidence 4799999999999999999884 56899999775431 1233579999976 4554 3444 47
Q ss_pred cccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 119 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 119 ~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
++-++.+|. .+|..+.|..... ..--.+..+|.|||.+|.
T Consensus 93 ~a~laHaD~---G~g~~~~d~a~a~----~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 93 GAALAHADI---GTGDKEKDDATAA----WLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp -EEEEEE-------S-HHHHHHHHH----HHHHHHGGGEEEEEEEEE
T ss_pred ceEEEEeec---CCCCcchhHHHHH----hhhHHHHHHhcCCcEEEe
Confidence 899999996 2444333322111 112345679999999886
No 277
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=89.41 E-value=0.49 Score=48.34 Aligned_cols=161 Identities=20% Similarity=0.179 Sum_probs=84.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CCCCcE----EEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVI----QVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i~gV~----~i~gDIt~~~t 107 (316)
++..+|.|-|||+||+-....+.+... .....+.|.++++.. -+.|+. ...+|-..-+.
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~---------~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~ 255 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRH---------QDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPK 255 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhh---------ccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCc
Confidence 467799999999999998888887521 013689999988731 133443 22333222111
Q ss_pred HHHHHhhcCCccccEEEeCCCCCCCCCCCc------cH----HH-----HHHHHHHHHHHHHHcccCCcEEEEEE-----
Q 021161 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDM------DE----FV-----QSQLILAGLTVVTHVLKEGGKFIAKI----- 167 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDgapdvtG~~~~------de----~~-----~~~L~~aaL~~a~~vLkpGG~fV~Ki----- 167 (316)
.. +.....+||+|+++.....++-... +. +. ... -++.+..+...|+|||+..+-+
T Consensus 256 ~~---~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~af~~h~~~~l~~~g~aaivl~~gvl 331 (489)
T COG0286 256 HD---DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSA-DLAFLQHILYKLKPGGRAAIVLPDGVL 331 (489)
T ss_pred cc---ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCch-HHHHHHHHHHhcCCCceEEEEecCCcC
Confidence 00 0123468999999976542222111 00 00 011 1455777888999999555443
Q ss_pred ccCCCHHHHHHH-HHhcCCceEEecCCCC-CCCCcceEEEEecccCCC
Q 021161 168 FRGKDTSLLYCQ-LKLFFPVVTFAKPKSS-RNSSIEAFAVCENYFPPE 213 (316)
Q Consensus 168 f~~~~~~~l~~~-l~~~F~~V~~~KP~sS-R~~S~E~fvVc~gf~~p~ 213 (316)
|++.....+... +....-+..+.-|... .+.++...|+-..-..+.
T Consensus 332 fr~~~e~~IR~~l~~~~~~~~ii~lp~~lF~~t~i~~~Il~l~k~k~~ 379 (489)
T COG0286 332 FRGGAEKDIRKDLLEDNLLEAIIGLPTGLFYNTGIPTNILFLTKNKPA 379 (489)
T ss_pred cCCCchHHHHHHHHhccceEEeeeCChhhcccCCCCeEEEEeecCCCC
Confidence 444434444433 3332333334444433 233444444444433333
No 278
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.35 E-value=0.31 Score=46.82 Aligned_cols=95 Identities=15% Similarity=0.201 Sum_probs=56.5
Q ss_pred EEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCCCcEEEecCccChhhHHHHHhhcCCc
Q 021161 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (316)
Q Consensus 45 VLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~gV~~i~gDIt~~~t~~~I~~~~~~~ 118 (316)
|+||.||.|+++.-+.+... -.|.|+|+.+.+ ..++ ..+++||++.... .+ .
T Consensus 1 vidLF~G~GG~~~Gl~~aG~--------------~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~-----~~--~ 58 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF--------------KCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPS-----DI--P 58 (315)
T ss_pred CEEEecCccHHHHHHHHcCC--------------eEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhh-----hC--C
Confidence 68999999999988865321 245689998853 2455 5567899876421 12 3
Q ss_pred cccEEEeCCCCCCCCCC------CccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 119 KADLVVCDGAPDVTGLH------DMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 119 ~~DlVvsDgapdvtG~~------~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
.+|+++.. |.|++.. ..+. ....|....+.+ ...++|. .||+.
T Consensus 59 ~~dvl~gg--~PCq~fS~ag~~~~~~d-~r~~L~~~~~r~-i~~~~P~-~~v~E 107 (315)
T TIGR00675 59 DFDILLGG--FPCQPFSIAGKRKGFED-TRGTLFFEIVRI-LKEKKPK-FFLLE 107 (315)
T ss_pred CcCEEEec--CCCcccchhcccCCCCC-chhhHHHHHHHH-HhhcCCC-EEEee
Confidence 58999864 3444432 1111 133455554444 3456775 44443
No 279
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=89.20 E-value=0.55 Score=45.28 Aligned_cols=100 Identities=19% Similarity=0.307 Sum_probs=58.7
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCCCcEEEecCccChhhHHHHHhhcC
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFD 116 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~gV~~i~gDIt~~~t~~~I~~~~~ 116 (316)
.+++||+||-||++.-+..... --+.|+|+.+.+ ..+...++.+||...... .+.
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf--------------~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~-----~~~ 64 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGF--------------EIVFANEIDPPAVATYKANFPHGDIILGDIKELDGE-----ALR 64 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCC--------------eEEEEEecCHHHHHHHHHhCCCCceeechHhhcChh-----hcc
Confidence 5899999999999977755321 257799999964 234345677888765421 122
Q ss_pred CccccEEEeCCCCCCCCC-----C-CccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 117 GCKADLVVCDGAPDVTGL-----H-DMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 117 ~~~~DlVvsDgapdvtG~-----~-~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
...+|+|+.- |.|++. + ..+.. ...|... +......++| -.||+.
T Consensus 65 ~~~~DvligG--pPCQ~FS~aG~r~~~~D~-R~~L~~~-~~r~I~~~~P-~~fv~E 115 (328)
T COG0270 65 KSDVDVLIGG--PPCQDFSIAGKRRGYDDP-RGSLFLE-FIRLIEQLRP-KFFVLE 115 (328)
T ss_pred ccCCCEEEeC--CCCcchhhcCcccCCcCc-cceeeHH-HHHHHHhhCC-CEEEEe
Confidence 2279999964 444443 2 11111 1223232 3344567788 555554
No 280
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=89.12 E-value=1.1 Score=41.10 Aligned_cols=96 Identities=21% Similarity=0.138 Sum_probs=53.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC----C-----C-CCCc-EEEecCccChhhHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----A-----P-IEGV-IQVQGDITNARTAE 109 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~----~-----~-i~gV-~~i~gDIt~~~t~~ 109 (316)
+..++||.|||=|..|..+.-.+. -+|-.||..+- + . ..++ ++.+.-+.+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f--------------~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~--- 117 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF--------------DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT--- 117 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---------------SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-----
T ss_pred CcceEEecccccchhHHHHHHHhc--------------CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc---
Confidence 357999999999998876533221 36767776652 0 1 1222 23333222211
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEE
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
....+||+|-+-= |.| |-.|+. +.+.|..+...|+|+|.+|+|-
T Consensus 118 -----P~~~~YDlIW~QW---~lg-hLTD~d-----lv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 118 -----PEEGKYDLIWIQW---CLG-HLTDED-----LVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp -------TT-EEEEEEES----GG-GS-HHH-----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----CCCCcEeEEEehH---hhc-cCCHHH-----HHHHHHHHHHhCcCCcEEEEEe
Confidence 1236899999863 222 212221 3567888999999999999993
No 281
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.11 E-value=5.3 Score=35.34 Aligned_cols=113 Identities=15% Similarity=0.137 Sum_probs=66.4
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------CCCCcEEEecCccChhhHHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~i~gV~~i~gDIt~~~t~~~I~ 112 (316)
+++|+=.|++ |++.+.+++.+.. .+.+|++++..+.. ...++..+++|+++......+.
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 72 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALK-----------EGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVI 72 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHH
Confidence 4688888875 8888999888742 34689999886631 1125788999999987666554
Q ss_pred hhcC--CccccEEEeCCCCCC-CCCCCcc---HHHHHHH--HHHHHHHHHHcccCCcEEEEE
Q 021161 113 RHFD--GCKADLVVCDGAPDV-TGLHDMD---EFVQSQL--ILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 113 ~~~~--~~~~DlVvsDgapdv-tG~~~~d---e~~~~~L--~~aaL~~a~~vLkpGG~fV~K 166 (316)
+... -+.+|.|+...+... ...++.+ +..+..+ ....+......++.+|.||+-
T Consensus 73 ~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 134 (238)
T PRK05786 73 EKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV 134 (238)
T ss_pred HHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence 4321 135788887753211 1111111 1111111 122344455666788888764
No 282
>PRK06196 oxidoreductase; Provisional
Probab=88.81 E-value=3.3 Score=38.99 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=54.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCCCcEEEecCccChhhHHHHHhh
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
.+++||=.|+ +|+....+++++.. .+.+|+.++.++.. .+.++.++++|+++...++.+.+.
T Consensus 25 ~~k~vlITGa-sggIG~~~a~~L~~-----------~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~ 92 (315)
T PRK06196 25 SGKTAIVTGG-YSGLGLETTRALAQ-----------AGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAER 92 (315)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHH
Confidence 3567887774 57889998888742 24688888877531 244588899999998876665543
Q ss_pred cC--CccccEEEeCCCC
Q 021161 115 FD--GCKADLVVCDGAP 129 (316)
Q Consensus 115 ~~--~~~~DlVvsDgap 129 (316)
+. .+++|+||.+.+.
T Consensus 93 ~~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 93 FLDSGRRIDILINNAGV 109 (315)
T ss_pred HHhcCCCCCEEEECCCC
Confidence 32 2479999998753
No 283
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.65 E-value=4.2 Score=37.09 Aligned_cols=76 Identities=16% Similarity=0.014 Sum_probs=53.1
Q ss_pred CCeEEEECCC-CCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-C-------CC-CCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-A-------PI-EGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcag-PG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-~-------~i-~gV~~i~gDIt~~~t~~~I 111 (316)
++++|=.|++ .+++-..+++.+.. .+.+|+.++.+.- . .+ ..+..++.|+++.+..+.+
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~-----------~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~ 75 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQE-----------QGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASL 75 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHH-----------CCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHH
Confidence 5689999996 68899999988742 3468888776531 1 12 2466789999998876665
Q ss_pred HhhcC--CccccEEEeCCC
Q 021161 112 IRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 112 ~~~~~--~~~~DlVvsDga 128 (316)
.+... .+++|++|.+..
T Consensus 76 ~~~~~~~~g~iD~li~nAG 94 (256)
T PRK07889 76 ADRVREHVDGLDGVVHSIG 94 (256)
T ss_pred HHHHHHHcCCCcEEEEccc
Confidence 54321 257999999864
No 284
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.63 E-value=6.2 Score=35.79 Aligned_cols=77 Identities=16% Similarity=0.061 Sum_probs=53.4
Q ss_pred CCCeEEEECCCC-CHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-----CCC--CCcEEEecCccChhhHHHHH
Q 021161 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----API--EGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 41 ~~~rVLDLcagP-G~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-----~~i--~gV~~i~gDIt~~~t~~~I~ 112 (316)
.++++|=.|++. ++.-..+++++.. .+.+|+.++.+.. ..+ ..+..++.|+++.+..+.+.
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~-----------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 74 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKD-----------QGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAF 74 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHH-----------CCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHH
Confidence 357899999886 7889999988742 3568887776531 011 24678899999988766654
Q ss_pred hhcC--CccccEEEeCCC
Q 021161 113 RHFD--GCKADLVVCDGA 128 (316)
Q Consensus 113 ~~~~--~~~~DlVvsDga 128 (316)
+... -+++|++|.+..
T Consensus 75 ~~~~~~~g~iD~lv~nAg 92 (252)
T PRK06079 75 ATIKERVGKIDGIVHAIA 92 (252)
T ss_pred HHHHHHhCCCCEEEEccc
Confidence 4321 147999999864
No 285
>PRK06398 aldose dehydrogenase; Validated
Probab=88.63 E-value=4.5 Score=36.80 Aligned_cols=74 Identities=12% Similarity=0.085 Sum_probs=51.6
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCCCCCcEEEecCccChhhHHHHHhhcC--Ccc
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD--GCK 119 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~i~gV~~i~gDIt~~~t~~~I~~~~~--~~~ 119 (316)
+++||=.|+ .|+....+++++.. .+.+|+.++.+... ...+.++++|+++...+..+.+.+. .+.
T Consensus 6 gk~vlItGa-s~gIG~~ia~~l~~-----------~G~~Vi~~~r~~~~-~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 72 (258)
T PRK06398 6 DKVAIVTGG-SQGIGKAVVNRLKE-----------EGSNVINFDIKEPS-YNDVDYFKVDVSNKEQVIKGIDYVISKYGR 72 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHH-----------CCCeEEEEeCCccc-cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 467888885 56777778877741 34689988876543 3368889999999876655544321 136
Q ss_pred ccEEEeCCC
Q 021161 120 ADLVVCDGA 128 (316)
Q Consensus 120 ~DlVvsDga 128 (316)
+|.|+++.+
T Consensus 73 id~li~~Ag 81 (258)
T PRK06398 73 IDILVNNAG 81 (258)
T ss_pred CCEEEECCC
Confidence 999999864
No 286
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=88.40 E-value=0.28 Score=45.96 Aligned_cols=61 Identities=25% Similarity=0.354 Sum_probs=36.2
Q ss_pred EEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 97 ~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
++..|++....+.... .+ ..+||+|++-....+. -.+.++| ..|+.....+|||||.|++-
T Consensus 138 Vv~cDV~~~~pl~~~~-~~-p~~~D~v~s~fcLE~a-~~d~~~y------~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPV-VL-PPKFDCVISSFCLESA-CKDLDEY------RRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp EEE--TTSSSTTTTS--SS--SSEEEEEEESSHHHH--SSHHHH------HHHHHHHHTTEEEEEEEEEE
T ss_pred EEEeeccCCCCCCccc-cC-ccchhhhhhhHHHHHH-cCCHHHH------HHHHHHHHHHcCCCcEEEEE
Confidence 4567887765321100 01 1359999987532211 1345665 57889999999999999974
No 287
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=88.29 E-value=2.8 Score=39.95 Aligned_cols=97 Identities=19% Similarity=0.164 Sum_probs=64.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCc-EEEecCccChhhHHHHHhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGV-IQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV-~~i~gDIt~~~t~~~I~~~ 114 (316)
..+..++|.|||-|- .+. .++...+++.|+.... .-.|. ....+|+.+..
T Consensus 44 ~~gsv~~d~gCGngk-------y~~----------~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p-------- 98 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGK-------YLG----------VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLP-------- 98 (293)
T ss_pred CCcceeeecccCCcc-------cCc----------CCCcceeeecchhhhhccccccCCCceeehhhhhcCC--------
Confidence 458899999999993 221 1245689999998742 12233 56677877754
Q ss_pred cCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 115 ~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
+...+||..++-. + +-+.-....-..++....++|+|||...+-++.
T Consensus 99 ~~~~s~d~~lsia---v-----ihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 99 FREESFDAALSIA---V-----IHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred CCCCccccchhhh---h-----hhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 4567899888743 1 112222233367889999999999998887764
No 288
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=88.15 E-value=2.6 Score=37.11 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=63.5
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCCCCC-cEEEecCccChhhHHHHHhhcCCccc
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEG-VIQVQGDITNARTAEVVIRHFDGCKA 120 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~i~g-V~~i~gDIt~~~t~~~I~~~~~~~~~ 120 (316)
++++|=+|.- =-|-.+++-..+ ..+|+.|+-++.. +.. .+.-.-.|+-.+.++... .. .++|
T Consensus 2 ~~~g~V~GS~-~PwvEv~aL~~G-------------A~~iltveyn~L~-i~~~~~dr~ssi~p~df~~~~~-~y-~~~f 64 (177)
T PF03269_consen 2 GKSGLVVGSM-QPWVEVMALQHG-------------AAKILTVEYNKLE-IQEEFRDRLSSILPVDFAKNWQ-KY-AGSF 64 (177)
T ss_pred CceEEEEecC-CchhhHHHHHcC-------------CceEEEEeecccc-cCcccccccccccHHHHHHHHH-Hh-hccc
Confidence 4566667666 457777775543 4689999988753 111 010011222222222221 12 3579
Q ss_pred cEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCC
Q 021161 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (316)
Q Consensus 121 DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~ 171 (316)
|.+.|-.+.+..|+.-.-+.+-..=-+.++..+.++||+||.|.+.+--|.
T Consensus 65 D~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 65 DFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 999998877766664221110000013566778899999999998765443
No 289
>PRK06953 short chain dehydrogenase; Provisional
Probab=87.84 E-value=5.4 Score=35.20 Aligned_cols=73 Identities=16% Similarity=0.124 Sum_probs=51.8
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--C--CCCcEEEecCccChhhHHHHHhhcCCcc
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P--IEGVIQVQGDITNARTAEVVIRHFDGCK 119 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--~--i~gV~~i~gDIt~~~t~~~I~~~~~~~~ 119 (316)
++|=.|+ +|++...+++++.. .+.+|+.++.++.. . -.++..+++|+++...++.+...+.+.+
T Consensus 3 ~vlvtG~-sg~iG~~la~~L~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 70 (222)
T PRK06953 3 TVLIVGA-SRGIGREFVRQYRA-----------DGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEA 70 (222)
T ss_pred eEEEEcC-CCchhHHHHHHHHh-----------CCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCC
Confidence 5665554 58888888888742 34688888877531 1 1356788999999988777665555568
Q ss_pred ccEEEeCCC
Q 021161 120 ADLVVCDGA 128 (316)
Q Consensus 120 ~DlVvsDga 128 (316)
+|+|++...
T Consensus 71 ~d~vi~~ag 79 (222)
T PRK06953 71 LDAAVYVAG 79 (222)
T ss_pred CCEEEECCC
Confidence 999999864
No 290
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=87.44 E-value=10 Score=36.07 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=49.5
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CCCCcEEEecCccChhhHHHHHh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i~gV~~i~gDIt~~~t~~~I~~ 113 (316)
+++||=.|+ +|.....+++++.. .+...+|+++|..... ...++.++++|+++...+..++
T Consensus 4 ~k~vLVTGa-tG~IG~~l~~~L~~---------~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~- 72 (324)
T TIGR03589 4 NKSILITGG-TGSFGKAFISRLLE---------NYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRAL- 72 (324)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHH---------hCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHH-
Confidence 567887775 58888898887741 1112478888765431 1136888999999987665443
Q ss_pred hcCCccccEEEeCCCC
Q 021161 114 HFDGCKADLVVCDGAP 129 (316)
Q Consensus 114 ~~~~~~~DlVvsDgap 129 (316)
. .+|.|+...+.
T Consensus 73 --~--~iD~Vih~Ag~ 84 (324)
T TIGR03589 73 --R--GVDYVVHAAAL 84 (324)
T ss_pred --h--cCCEEEECccc
Confidence 2 48999987653
No 291
>PRK08264 short chain dehydrogenase; Validated
Probab=87.34 E-value=7.4 Score=34.48 Aligned_cols=75 Identities=15% Similarity=0.097 Sum_probs=53.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCC-EEEEEeCCCCCC---CCCcEEEecCccChhhHHHHHhhcC
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP---IEGVIQVQGDITNARTAEVVIRHFD 116 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~-~IvaVDl~~~~~---i~gV~~i~gDIt~~~t~~~I~~~~~ 116 (316)
.+.+||=.| |+|+....+++.+.. .+. +|++++..+... -.++.++++|+++...+..+.+.+
T Consensus 5 ~~~~vlItG-gsg~iG~~la~~l~~-----------~G~~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~- 71 (238)
T PRK08264 5 KGKVVLVTG-ANRGIGRAFVEQLLA-----------RGAAKVYAAARDPESVTDLGPRVVPLQLDVTDPASVAAAAEAA- 71 (238)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH-----------CCcccEEEEecChhhhhhcCCceEEEEecCCCHHHHHHHHHhc-
Confidence 345778777 578888888887741 234 788888765431 146888999999988777766654
Q ss_pred CccccEEEeCCCC
Q 021161 117 GCKADLVVCDGAP 129 (316)
Q Consensus 117 ~~~~DlVvsDgap 129 (316)
..+|+|++..+.
T Consensus 72 -~~id~vi~~ag~ 83 (238)
T PRK08264 72 -SDVTILVNNAGI 83 (238)
T ss_pred -CCCCEEEECCCc
Confidence 368999998654
No 292
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=87.27 E-value=2.8 Score=41.48 Aligned_cols=101 Identities=20% Similarity=0.187 Sum_probs=65.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------------------CCCCcEEEecC
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------PIEGVIQVQGD 101 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------------------~i~gV~~i~gD 101 (316)
++-.+||=||.|-|-=...+.+. + .-.+|+-||+.|.+ ..+.|+++..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P------------~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dD 354 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-P------------QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDD 354 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-C------------CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEecc
Confidence 56689999999999533333321 1 24589999999831 13568888888
Q ss_pred ccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHH-HHHHHHHHHcccCCcEEEEEE
Q 021161 102 ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI-LAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 102 It~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~-~aaL~~a~~vLkpGG~fV~Ki 167 (316)
..+. +.. ....||.||.|.. | .+......|. ......+.+.|+++|.+|+.-
T Consensus 355 Af~w-----lr~--a~~~fD~vIVDl~-D------P~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 355 AFQW-----LRT--AADMFDVVIVDLP-D------PSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred HHHH-----HHh--hcccccEEEEeCC-C------CCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 8763 221 2458999999963 2 1111122222 344567889999999999874
No 293
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.08 E-value=4.3 Score=37.41 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=52.4
Q ss_pred CCCeEEEECCCC-CHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC---------CCCCCcEEEecCccChhhHHH
Q 021161 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 41 ~~~rVLDLcagP-G~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~---------~~i~gV~~i~gDIt~~~t~~~ 110 (316)
.++++|=.|++. +|.-..+++++.. .+.+|+.++.+.. .....+..++.|+++.+.++.
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~-----------~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~ 73 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHR-----------EGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDA 73 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHH-----------CCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHH
Confidence 356888899987 4888888888742 2467777766531 012346678899999887766
Q ss_pred HHhhcC--CccccEEEeCCC
Q 021161 111 VIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDga 128 (316)
+.+... -+++|++|.+.+
T Consensus 74 ~~~~~~~~~g~iD~linnAg 93 (262)
T PRK07984 74 MFAELGKVWPKFDGFVHSIG 93 (262)
T ss_pred HHHHHHhhcCCCCEEEECCc
Confidence 554321 146999999974
No 294
>PRK07578 short chain dehydrogenase; Provisional
Probab=86.96 E-value=9.1 Score=33.14 Aligned_cols=100 Identities=23% Similarity=0.353 Sum_probs=60.4
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCCCCCcEEEecCccChhhHHHHHhhcCCccccEE
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLV 123 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlV 123 (316)
++|=.|+ .|+....+++++.. . .+|+.++.++- .++.|+++.+..+.+.+.+ +++|+|
T Consensus 2 ~vlItGa-s~giG~~la~~l~~-----------~-~~vi~~~r~~~-------~~~~D~~~~~~~~~~~~~~--~~id~l 59 (199)
T PRK07578 2 KILVIGA-SGTIGRAVVAELSK-----------R-HEVITAGRSSG-------DVQVDITDPASIRALFEKV--GKVDAV 59 (199)
T ss_pred eEEEEcC-CcHHHHHHHHHHHh-----------c-CcEEEEecCCC-------ceEecCCChHHHHHHHHhc--CCCCEE
Confidence 5677775 57788888888741 2 67888876542 4678999998887777665 369999
Q ss_pred EeCCCCCC-CCCCCccH--H---HHHHHH--HHHHHHHHHcccCCcEEEE
Q 021161 124 VCDGAPDV-TGLHDMDE--F---VQSQLI--LAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 124 vsDgapdv-tG~~~~de--~---~~~~L~--~aaL~~a~~vLkpGG~fV~ 165 (316)
+...+... .-..+.+. + +...+. ...++.+...++++|.++.
T Consensus 60 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~ 109 (199)
T PRK07578 60 VSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTL 109 (199)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99864311 11112211 1 111111 2234445556677888776
No 295
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=86.91 E-value=3.6 Score=40.16 Aligned_cols=88 Identities=18% Similarity=0.176 Sum_probs=54.6
Q ss_pred CCCCeEEEECCC-CCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----CCCCcEEEecCccChhhHHHHHh
Q 021161 40 EGVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 40 ~~~~rVLDLcag-PG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----~i~gV~~i~gDIt~~~t~~~I~~ 113 (316)
++|.+|+=.|+| -|....-+++.+ ..+|+|+|.++.. .+-...++... +.+..+.+.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~--------------ga~Via~~~~~~K~e~a~~lGAd~~i~~~--~~~~~~~~~- 227 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAM--------------GAEVIAITRSEEKLELAKKLGADHVINSS--DSDALEAVK- 227 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc--------------CCeEEEEeCChHHHHHHHHhCCcEEEEcC--CchhhHHhH-
Confidence 689999999988 222333345545 3799999999852 12222333322 333333332
Q ss_pred hcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 114 ~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
+.||+|+.-. +. ..++.+++.|++||++|+-
T Consensus 228 ----~~~d~ii~tv-----~~-------------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 228 ----EIADAIIDTV-----GP-------------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred ----hhCcEEEECC-----Ch-------------hhHHHHHHHHhcCCEEEEE
Confidence 2399999642 21 2367789999999999974
No 296
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=86.63 E-value=3.3 Score=39.93 Aligned_cols=96 Identities=16% Similarity=0.120 Sum_probs=53.5
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCC-EEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~-~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~ 113 (316)
++++.+||=+|+ |+..+.+.+.... .+. +|+++|.++.. .--|+..+ -|..+....+.+.+
T Consensus 189 i~~g~~VlV~G~--G~vG~~a~~lak~-----------~G~~~Vi~~~~~~~r~~~a~~~Ga~~~-i~~~~~~~~~~i~~ 254 (371)
T cd08281 189 VRPGQSVAVVGL--GGVGLSALLGAVA-----------AGASQVVAVDLNEDKLALARELGATAT-VNAGDPNAVEQVRE 254 (371)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCcEEEEcCCHHHHHHHHHcCCceE-eCCCchhHHHHHHH
Confidence 456788888885 4555544332210 124 68999887632 11233211 12233333444554
Q ss_pred hcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 114 ~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
...+ .+|+|+- ++|.. ..+..+.++|++||+++.-
T Consensus 255 ~~~~-g~d~vid-----~~G~~------------~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 255 LTGG-GVDYAFE-----MAGSV------------PALETAYEITRRGGTTVTA 289 (371)
T ss_pred HhCC-CCCEEEE-----CCCCh------------HHHHHHHHHHhcCCEEEEE
Confidence 4443 7999983 33321 2356678899999999863
No 297
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.62 E-value=1.7 Score=36.04 Aligned_cols=94 Identities=24% Similarity=0.250 Sum_probs=60.6
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCCCCCcEEEecCccChhhHHHHHhhcCCccccE
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~Dl 122 (316)
.+|+++|.| .+. ..++++.. .+..|+++|+.+-..-.|+.+...|||++... .. +.+|+
T Consensus 15 gkVvEVGiG--~~~-~VA~~L~e-----------~g~dv~atDI~~~~a~~g~~~v~DDitnP~~~-----iY--~~A~l 73 (129)
T COG1255 15 GKVVEVGIG--FFL-DVAKRLAE-----------RGFDVLATDINEKTAPEGLRFVVDDITNPNIS-----IY--EGADL 73 (129)
T ss_pred CcEEEEccc--hHH-HHHHHHHH-----------cCCcEEEEecccccCcccceEEEccCCCccHH-----Hh--hCccc
Confidence 499999864 444 44555531 24789999999974348999999999998631 12 46999
Q ss_pred EEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCH
Q 021161 123 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT 173 (316)
Q Consensus 123 VvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~ 173 (316)
|.|-=.| ..+| .+.+..+.. -|-.+.++-..|+..
T Consensus 74 IYSiRpp---------pEl~----~~ildva~a---Vga~l~I~pL~Ge~v 108 (129)
T COG1255 74 IYSIRPP---------PELQ----SAILDVAKA---VGAPLYIKPLTGEPV 108 (129)
T ss_pred eeecCCC---------HHHH----HHHHHHHHh---hCCCEEEEecCCCCC
Confidence 9986433 1222 333444442 266677777776654
No 298
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=86.61 E-value=0.99 Score=35.92 Aligned_cols=91 Identities=25% Similarity=0.191 Sum_probs=59.3
Q ss_pred CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHhhcCCccccEEEe
Q 021161 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125 (316)
Q Consensus 50 agPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvs 125 (316)
||.|..++.+++.+.. ....|+.+|..+.. .-.|+.++.||.++..++++ .+-+.+|.|++
T Consensus 4 ~G~g~~~~~i~~~L~~-----------~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~----a~i~~a~~vv~ 68 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE-----------GGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLER----AGIEKADAVVI 68 (116)
T ss_dssp ES-SHHHHHHHHHHHH-----------TTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHH----TTGGCESEEEE
T ss_pred EcCCHHHHHHHHHHHh-----------CCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhh----cCccccCEEEE
Confidence 5778899999988851 12489999999842 23578999999999987654 34468999988
Q ss_pred CCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 126 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 126 DgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
... .|+. .. .+....+-+.|...+++++..
T Consensus 69 ~~~--------~d~~-n~-----~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 69 LTD--------DDEE-NL-----LIALLARELNPDIRIIARVND 98 (116)
T ss_dssp ESS--------SHHH-HH-----HHHHHHHHHTTTSEEEEEESS
T ss_pred ccC--------CHHH-HH-----HHHHHHHHHCCCCeEEEEECC
Confidence 531 1221 11 122334566778888887754
No 299
>PRK05993 short chain dehydrogenase; Provisional
Probab=86.55 E-value=12 Score=34.36 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=53.0
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--C--CCCcEEEecCccChhhHHHHHhhc--
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P--IEGVIQVQGDITNARTAEVVIRHF-- 115 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--~--i~gV~~i~gDIt~~~t~~~I~~~~-- 115 (316)
+++||=.|+ .|+....+++.+.. .+.+|++++.++.. . -.++..+++|+++......+.+..
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~-----------~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 71 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQS-----------DGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLE 71 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHH
Confidence 457777775 68888999888742 35689999877532 1 236888999999987665554432
Q ss_pred -CCccccEEEeCCCC
Q 021161 116 -DGCKADLVVCDGAP 129 (316)
Q Consensus 116 -~~~~~DlVvsDgap 129 (316)
.++..|+|+.+++.
T Consensus 72 ~~~g~id~li~~Ag~ 86 (277)
T PRK05993 72 LSGGRLDALFNNGAY 86 (277)
T ss_pred HcCCCccEEEECCCc
Confidence 12479999998643
No 300
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=86.52 E-value=6.4 Score=33.11 Aligned_cols=95 Identities=25% Similarity=0.314 Sum_probs=47.8
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCCCCCcEEEecCccChhhHHHHHhhcCCcccc
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~D 121 (316)
-.+||++|-|-= ..+ ++.+.. .+..|+++|+.+.....|+.++.-||+++.. +.. +.+|
T Consensus 14 ~~kiVEVGiG~~--~~v-A~~L~~-----------~G~dV~~tDi~~~~a~~g~~~v~DDif~P~l-----~iY--~~a~ 72 (127)
T PF03686_consen 14 YGKIVEVGIGFN--PEV-AKKLKE-----------RGFDVIATDINPRKAPEGVNFVVDDIFNPNL-----EIY--EGAD 72 (127)
T ss_dssp SSEEEEET-TT----HH-HHHHHH-----------HS-EEEEE-SS-S----STTEE---SSS--H-----HHH--TTEE
T ss_pred CCcEEEECcCCC--HHH-HHHHHH-----------cCCcEEEEECcccccccCcceeeecccCCCH-----HHh--cCCc
Confidence 349999987643 222 222210 1379999999998433899999999999762 112 3699
Q ss_pred EEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCH
Q 021161 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT 173 (316)
Q Consensus 122 lVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~ 173 (316)
+|.|-=.| .+ |+...+.+|.++ |..|+++.+.++..
T Consensus 73 lIYSiRPP-----~E--------l~~~il~lA~~v---~adlii~pL~~e~~ 108 (127)
T PF03686_consen 73 LIYSIRPP-----PE--------LQPPILELAKKV---GADLIIRPLGGESP 108 (127)
T ss_dssp EEEEES-------TT--------SHHHHHHHHHHH---T-EEEEE-BTTB--
T ss_pred EEEEeCCC-----hH--------HhHHHHHHHHHh---CCCEEEECCCCCCC
Confidence 99986433 11 223445555533 77899988876543
No 301
>PRK06523 short chain dehydrogenase; Provisional
Probab=86.06 E-value=12 Score=33.68 Aligned_cols=76 Identities=20% Similarity=0.094 Sum_probs=51.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCCC-CCcEEEecCccChhhHHHHHhhcC--C
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI-EGVIQVQGDITNARTAEVVIRHFD--G 117 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~i-~gV~~i~gDIt~~~t~~~I~~~~~--~ 117 (316)
.+++||-.|+ +|+....+++++.. .+.+|++++..+-... .++.++++|+++.+....+.+... .
T Consensus 8 ~~k~vlItGa-s~gIG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (260)
T PRK06523 8 AGKRALVTGG-TKGIGAATVARLLE-----------AGARVVTTARSRPDDLPEGVEFVAADLTTAEGCAAVARAVLERL 75 (260)
T ss_pred CCCEEEEECC-CCchhHHHHHHHHH-----------CCCEEEEEeCChhhhcCCceeEEecCCCCHHHHHHHHHHHHHHc
Confidence 3578888885 56677888877741 3468999987764333 347789999999887665443221 1
Q ss_pred ccccEEEeCCC
Q 021161 118 CKADLVVCDGA 128 (316)
Q Consensus 118 ~~~DlVvsDga 128 (316)
+.+|.|+.+.+
T Consensus 76 ~~id~vi~~ag 86 (260)
T PRK06523 76 GGVDILVHVLG 86 (260)
T ss_pred CCCCEEEECCc
Confidence 46899998764
No 302
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=85.97 E-value=15 Score=34.97 Aligned_cols=72 Identities=22% Similarity=0.149 Sum_probs=49.7
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC------C---CCcEEEecCccChhhHHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I---EGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~------i---~gV~~i~gDIt~~~t~~~I~ 112 (316)
+++||=.| |+|....++++++-. .+.+|+++|..+... + ..+.++.+|+++......+.
T Consensus 4 ~k~ilItG-atG~IG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 71 (349)
T TIGR02622 4 GKKVLVTG-HTGFKGSWLSLWLLE-----------LGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAI 71 (349)
T ss_pred CCEEEEEC-CCChhHHHHHHHHHH-----------CCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHH
Confidence 57788777 677888888887741 246899998765421 1 24667899999987655544
Q ss_pred hhcCCccccEEEeCCC
Q 021161 113 RHFDGCKADLVVCDGA 128 (316)
Q Consensus 113 ~~~~~~~~DlVvsDga 128 (316)
+ ...+|.|+.-++
T Consensus 72 ~---~~~~d~vih~A~ 84 (349)
T TIGR02622 72 A---EFKPEIVFHLAA 84 (349)
T ss_pred h---hcCCCEEEECCc
Confidence 3 335899998765
No 303
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=85.95 E-value=5.6 Score=40.52 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=72.2
Q ss_pred CCCC-eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----------CCCCcEEEecCccChhhH
Q 021161 40 EGVK-RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 40 ~~~~-rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----------~i~gV~~i~gDIt~~~t~ 108 (316)
.+-. +++-||||-=-++..+-+-. -..|+.+|.++.+ .-+...+.+.|++...
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G--------------~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~-- 109 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNG--------------FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLV-- 109 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcC--------------CCCceeccccHHHHHHHHhccccCCcceEEEEecchhcc--
Confidence 4444 99999999886665554433 2478999999832 1345677888998763
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEc
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 168 (316)
|+.++||+|+--|..|.+=-...+.+ -......-+....++|++||+++.-++
T Consensus 110 ------fedESFdiVIdkGtlDal~~de~a~~-~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 110 ------FEDESFDIVIDKGTLDALFEDEDALL-NTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ------CCCcceeEEEecCccccccCCchhhh-hhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 78899999999887665422111222 113334567788999999999886555
No 304
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=85.93 E-value=0.97 Score=44.76 Aligned_cols=38 Identities=32% Similarity=0.351 Sum_probs=31.5
Q ss_pred CCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCC
Q 021161 37 NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (316)
Q Consensus 37 ~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~ 88 (316)
..+.+-..|+|+|+|+|..|+.++-..+ ..|+|||-+.
T Consensus 149 ~~f~gi~~vvD~GaG~G~LSr~lSl~y~--------------lsV~aIegsq 186 (476)
T KOG2651|consen 149 SDFTGIDQVVDVGAGQGHLSRFLSLGYG--------------LSVKAIEGSQ 186 (476)
T ss_pred HhhcCCCeeEEcCCCchHHHHHHhhccC--------------ceEEEeccch
Confidence 3456778999999999999999987653 6899999875
No 305
>PRK10458 DNA cytosine methylase; Provisional
Probab=85.62 E-value=1.2 Score=45.21 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=37.0
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC---CCcEEEecCccChh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNAR 106 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i---~gV~~i~gDIt~~~ 106 (316)
..+++||+||-||++.-+-... .-.|.++|+.+.+ .. ++...+.+||++..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG--------------~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG--------------GQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC--------------CEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCc
Confidence 4699999999999998885432 1256789999854 12 34556778998764
No 306
>PRK08267 short chain dehydrogenase; Provisional
Probab=85.59 E-value=11 Score=34.00 Aligned_cols=74 Identities=11% Similarity=0.092 Sum_probs=50.1
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC--CCcEEEecCccChhhHHHHHhhc
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI--EGVIQVQGDITNARTAEVVIRHF 115 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i--~gV~~i~gDIt~~~t~~~I~~~~ 115 (316)
++|=.|+ +|+....+++++.. .+.+|+.++.++.. .+ ..+.++++|+++...+.+++...
T Consensus 3 ~vlItGa-sg~iG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 3 SIFITGA-ASGIGRATALLFAA-----------EGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADF 70 (260)
T ss_pred EEEEeCC-CchHHHHHHHHHHH-----------CCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 4666664 57888888887742 34688888876531 12 25788999999988766554432
Q ss_pred C---CccccEEEeCCCC
Q 021161 116 D---GCKADLVVCDGAP 129 (316)
Q Consensus 116 ~---~~~~DlVvsDgap 129 (316)
. .+++|.|++..+.
T Consensus 71 ~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 71 AAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHcCCCCCEEEECCCC
Confidence 1 3579999988643
No 307
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.34 E-value=20 Score=32.65 Aligned_cols=77 Identities=14% Similarity=-0.026 Sum_probs=53.1
Q ss_pred CCCeEEEECCCC-CHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-----C----CC--CCcEEEecCccChhhH
Q 021161 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A----PI--EGVIQVQGDITNARTA 108 (316)
Q Consensus 41 ~~~rVLDLcagP-G~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-----~----~i--~gV~~i~gDIt~~~t~ 108 (316)
.++++|=.|++. ++.-..+++.+.. .+.+|+.++...- . .+ ..+..++.|+++.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 74 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHN-----------AGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEI 74 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH-----------CCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHH
Confidence 457899999984 8899999988752 3467877765321 0 12 2467889999998876
Q ss_pred HHHHhhcC--CccccEEEeCCC
Q 021161 109 EVVIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 109 ~~I~~~~~--~~~~DlVvsDga 128 (316)
+.+.+... -+++|+++.+.+
T Consensus 75 ~~~~~~~~~~~g~ld~lv~nag 96 (257)
T PRK08594 75 TACFETIKEEVGVIHGVAHCIA 96 (257)
T ss_pred HHHHHHHHHhCCCccEEEECcc
Confidence 66554332 157999998754
No 308
>PRK05884 short chain dehydrogenase; Provisional
Probab=85.21 E-value=4.9 Score=35.85 Aligned_cols=72 Identities=14% Similarity=0.028 Sum_probs=48.0
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----CCCCcEEEecCccChhhHHHHHhhcCCc
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----~i~gV~~i~gDIt~~~t~~~I~~~~~~~ 118 (316)
++|=.|++ |+..+.+++.+.. .+.+|+.++.++.. ...++..+++|+++...++.+.+.+. +
T Consensus 2 ~vlItGas-~giG~~ia~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~-~ 68 (223)
T PRK05884 2 EVLVTGGD-TDLGRTIAEGFRN-----------DGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFP-H 68 (223)
T ss_pred eEEEEeCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHh-h
Confidence 45555544 5677888877741 34688888876521 11256788999999887776665543 3
Q ss_pred cccEEEeCCC
Q 021161 119 KADLVVCDGA 128 (316)
Q Consensus 119 ~~DlVvsDga 128 (316)
.+|+++.+.+
T Consensus 69 ~id~lv~~ag 78 (223)
T PRK05884 69 HLDTIVNVPA 78 (223)
T ss_pred cCcEEEECCC
Confidence 6899998754
No 309
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=85.10 E-value=7 Score=36.38 Aligned_cols=96 Identities=13% Similarity=0.137 Sum_probs=52.5
Q ss_pred CcCCCCeEEEECCCC-CHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCcEEEecCccChhhHHHHH
Q 021161 38 IFEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 38 ~~~~~~rVLDLcagP-G~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~ 112 (316)
.++++.+||-+|+|+ |..+..+++.. +.+|++++.++.. .-.|+..+..+. +......+
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~--------------G~~V~~~~~s~~~~~~~~~~g~~~~~~~~-~~~~~~~~- 225 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM--------------GAAVIAVDIKEEKLELAKELGADEVLNSL-DDSPKDKK- 225 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc--------------CCEEEEEcCCHHHHHHHHHhCCCEEEcCC-CcCHHHHH-
Confidence 356788999876432 33333444444 3578888876531 112333222211 11122222
Q ss_pred hhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 113 ~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
....+..+|+|+.- .|. ...+..+.+.|++||+|+.-
T Consensus 226 ~~~~~~~~D~vid~-----~g~------------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 226 AAGLGGGFDVIFDF-----VGT------------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HHhcCCCceEEEEC-----CCC------------HHHHHHHHHHhhcCCEEEEE
Confidence 33455679999843 221 12356678999999999974
No 310
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=84.92 E-value=22 Score=35.00 Aligned_cols=75 Identities=24% Similarity=0.174 Sum_probs=53.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------------CCCCcEEEecCccChhhH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------------~i~gV~~i~gDIt~~~t~ 108 (316)
.+++||=.| |+|.....+.+.+.. .+.+|++++..+.. ..++++++++|+++...+
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~-----------~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l 126 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVR-----------RGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSL 126 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHH-----------CCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHH
Confidence 467888777 689999999887741 24688888876521 135789999999998877
Q ss_pred HHHHhhcCCccccEEEeCCC
Q 021161 109 EVVIRHFDGCKADLVVCDGA 128 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDga 128 (316)
..+.+... ..+|.|++..+
T Consensus 127 ~~~~~~~~-~~~D~Vi~~aa 145 (390)
T PLN02657 127 RKVLFSEG-DPVDVVVSCLA 145 (390)
T ss_pred HHHHHHhC-CCCcEEEECCc
Confidence 66654321 26999997644
No 311
>PRK06182 short chain dehydrogenase; Validated
Probab=84.88 E-value=7.5 Score=35.49 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=52.3
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--C--CCCcEEEecCccChhhHHHHHhhc--
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P--IEGVIQVQGDITNARTAEVVIRHF-- 115 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--~--i~gV~~i~gDIt~~~t~~~I~~~~-- 115 (316)
+++||=.| |+|+....+++++.. .+.+|++++.++.. . -.++..+++|+++.+....+.+..
T Consensus 3 ~k~vlItG-asggiG~~la~~l~~-----------~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 70 (273)
T PRK06182 3 KKVALVTG-ASSGIGKATARRLAA-----------QGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIA 70 (273)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 45677666 567788888888741 34689988876531 1 136888999999988766655432
Q ss_pred CCccccEEEeCCCC
Q 021161 116 DGCKADLVVCDGAP 129 (316)
Q Consensus 116 ~~~~~DlVvsDgap 129 (316)
..+.+|+|+++.+.
T Consensus 71 ~~~~id~li~~ag~ 84 (273)
T PRK06182 71 EEGRIDVLVNNAGY 84 (273)
T ss_pred hcCCCCEEEECCCc
Confidence 12479999998654
No 312
>PRK08265 short chain dehydrogenase; Provisional
Probab=84.54 E-value=15 Score=33.24 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=50.5
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC-CCcEEEecCccChhhHHHHHhh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i-~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
++++|=.| |+|+....+++++.. .+.+|+.+|.++.. .+ ..+.++++|+++.+....+.+.
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVA-----------AGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHH
Confidence 45777777 456788888887741 34688888887531 11 2477889999998866554432
Q ss_pred cC--CccccEEEeCCC
Q 021161 115 FD--GCKADLVVCDGA 128 (316)
Q Consensus 115 ~~--~~~~DlVvsDga 128 (316)
.. -++.|.|+.+.+
T Consensus 74 ~~~~~g~id~lv~~ag 89 (261)
T PRK08265 74 VVARFGRVDILVNLAC 89 (261)
T ss_pred HHHHhCCCCEEEECCC
Confidence 21 146999999864
No 313
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=84.34 E-value=19 Score=33.69 Aligned_cols=72 Identities=22% Similarity=0.209 Sum_probs=48.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------C----CCCcEEEecCccChhhH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P----IEGVIQVQGDITNARTA 108 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~----i~gV~~i~gDIt~~~t~ 108 (316)
.+++||=.| |+|.....+++++-. .+.+|++++..+.. . ..++.++++|+++....
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~ 71 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLF-----------RGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSF 71 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHH-----------CCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHH
Confidence 457788777 678888888887741 24577666544421 0 13578899999998765
Q ss_pred HHHHhhcCCccccEEEeCCCC
Q 021161 109 EVVIRHFDGCKADLVVCDGAP 129 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgap 129 (316)
..+. . .+|.|+...+.
T Consensus 72 ~~~~---~--~~d~vih~A~~ 87 (325)
T PLN02989 72 ELAI---D--GCETVFHTASP 87 (325)
T ss_pred HHHH---c--CCCEEEEeCCC
Confidence 5443 2 48999988764
No 314
>PRK07326 short chain dehydrogenase; Provisional
Probab=84.16 E-value=7.3 Score=34.43 Aligned_cols=76 Identities=7% Similarity=0.045 Sum_probs=52.2
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC---CCcEEEecCccChhhHHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i---~gV~~i~gDIt~~~t~~~I~ 112 (316)
+.+||=.| |+|+....+++++.. .+.+|++++.++-. .+ .++..+++|+++...+....
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~-----------~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~ 73 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLA-----------EGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAV 73 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHH-----------CCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHH
Confidence 46788888 588888898888741 24689999876621 11 46788999999987655544
Q ss_pred hhcC--CccccEEEeCCCC
Q 021161 113 RHFD--GCKADLVVCDGAP 129 (316)
Q Consensus 113 ~~~~--~~~~DlVvsDgap 129 (316)
+... ...+|.|+...++
T Consensus 74 ~~~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 74 DAIVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 3221 1369999987644
No 315
>PRK07454 short chain dehydrogenase; Provisional
Probab=84.03 E-value=6.3 Score=35.06 Aligned_cols=76 Identities=9% Similarity=-0.065 Sum_probs=52.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC----------CCCcEEEecCccChhhHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~----------i~gV~~i~gDIt~~~t~~~ 110 (316)
..+++|=.|+ .|++.+.+++++.. .+.+|+.++.++... -.++.++++|+++......
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAK-----------AGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAP 72 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHH
Confidence 4467888884 78899999988742 346899999875310 1257789999999876554
Q ss_pred HHhhcC--CccccEEEeCCC
Q 021161 111 VIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDga 128 (316)
+.+... .++.|.|+....
T Consensus 73 ~~~~~~~~~~~id~lv~~ag 92 (241)
T PRK07454 73 GIAELLEQFGCPDVLINNAG 92 (241)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 443221 136899998754
No 316
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=84.02 E-value=8.5 Score=35.52 Aligned_cols=133 Identities=20% Similarity=0.208 Sum_probs=69.2
Q ss_pred hhhhhhHHhhhHHcCCc--CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----------
Q 021161 23 ARSAFKLLQIDEEFNIF--EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------- 90 (316)
Q Consensus 23 aRsa~KL~qId~~f~~~--~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------- 90 (316)
-|-|-.+.| .-|.++ ...-++-|-|||.|....++.-..+. .=..|+|-|+++.+
T Consensus 33 VRLAsEi~q--R~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~-----------~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 33 VRLASEIFQ--RALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRR-----------RLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp HHHHHHHHH--HHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGG-----------GEEEEEEEES-HHHHHHHHHHHHC
T ss_pred HHHHHHHHH--HHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhH-----------HHHhHhcccCCHHHHHHHHHhhhh
Confidence 344444444 334555 34468999999999999887643220 12479999999731
Q ss_pred ----------------------C---------------------CCCcEEEecCccChhhHHHHHhhcCCccccEEEeCC
Q 021161 91 ----------------------P---------------------IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127 (316)
Q Consensus 91 ----------------------~---------------------i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDg 127 (316)
| ..-....+.||++......+. .+...|+|+.|.
T Consensus 100 Lt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~---~~~~~diViTDl 176 (246)
T PF11599_consen 100 LTPEGLEARREELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD---AGFTPDIVITDL 176 (246)
T ss_dssp CSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH---TT---SEEEEE-
T ss_pred ccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhc---cCCCCCEEEecC
Confidence 0 011346689999987655442 234579999996
Q ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHH
Q 021161 128 APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 174 (316)
Q Consensus 128 apdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~ 174 (316)
+- .-+-+|+...+..=....|+....+| |...+|+-+-++..+.
T Consensus 177 PY--G~~t~W~g~~~~~p~~~ml~~l~~vL-p~~sVV~v~~k~~Ki~ 220 (246)
T PF11599_consen 177 PY--GEMTSWQGEGSGGPVAQMLNSLAPVL-PERSVVAVSDKGRKIP 220 (246)
T ss_dssp -C--CCSSSTTS---HHHHHHHHHHHHCCS--TT-EEEEEESSSS--
T ss_pred CC--cccccccCCCCCCcHHHHHHHHHhhC-CCCcEEEEecCCcccc
Confidence 32 11223443334444456678888899 6666666466665444
No 317
>PRK06128 oxidoreductase; Provisional
Probab=84.00 E-value=12 Score=34.96 Aligned_cols=112 Identities=10% Similarity=0.044 Sum_probs=63.5
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------C----CCCcEEEecCccChhhHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P----IEGVIQVQGDITNARTAE 109 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~----i~gV~~i~gDIt~~~t~~ 109 (316)
+++||=.|+ .|+.-..+++++.. .+.+|+.+.+.... . -..+.++++|+++....+
T Consensus 55 ~k~vlITGa-s~gIG~~~a~~l~~-----------~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~ 122 (300)
T PRK06128 55 GRKALITGA-DSGIGRATAIAFAR-----------EGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCR 122 (300)
T ss_pred CCEEEEecC-CCcHHHHHHHHHHH-----------cCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHH
Confidence 467787774 67778888887741 24677766654321 0 123667899999987665
Q ss_pred HHHhhcC--CccccEEEeCCCCCC--CCCCCcc-----HHHHHHHH--HHHHHHHHHcccCCcEEEE
Q 021161 110 VVIRHFD--GCKADLVVCDGAPDV--TGLHDMD-----EFVQSQLI--LAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 110 ~I~~~~~--~~~~DlVvsDgapdv--tG~~~~d-----e~~~~~L~--~aaL~~a~~vLkpGG~fV~ 165 (316)
.+.+... -++.|+||.+.+... ....+.+ ..+...+. ...++.+...++++|++|.
T Consensus 123 ~~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~ 189 (300)
T PRK06128 123 QLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIIN 189 (300)
T ss_pred HHHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEE
Confidence 5543221 136999999875321 1122222 11222221 2334555566778888775
No 318
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=83.95 E-value=4.2 Score=36.65 Aligned_cols=84 Identities=8% Similarity=0.126 Sum_probs=51.2
Q ss_pred CCEEEEEeCCCCCCCCCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHH--HHHHHHHHH
Q 021161 78 LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI--LAGLTVVTH 155 (316)
Q Consensus 78 ~~~IvaVDl~~~~~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~--~aaL~~a~~ 155 (316)
+.+|+.+|..+.. .....++++|+++.+..+.+.+... +++|.|+++.+.. +...++..+...+. ...++.+..
T Consensus 9 G~~Vv~~~r~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~-~~iD~li~nAG~~--~~~~~~~~~~vN~~~~~~l~~~~~~ 84 (241)
T PRK12428 9 GARVIGVDRREPG-MTLDGFIQADLGDPASIDAAVAALP-GRIDALFNIAGVP--GTAPVELVARVNFLGLRHLTEALLP 84 (241)
T ss_pred CCEEEEEeCCcch-hhhhHhhcccCCCHHHHHHHHHHhc-CCCeEEEECCCCC--CCCCHHHhhhhchHHHHHHHHHHHH
Confidence 4688989887653 2224567899999887777666554 4799999987532 22233333332221 223344455
Q ss_pred cccCCcEEEE
Q 021161 156 VLKEGGKFIA 165 (316)
Q Consensus 156 vLkpGG~fV~ 165 (316)
.++++|++|.
T Consensus 85 ~~~~~g~Iv~ 94 (241)
T PRK12428 85 RMAPGGAIVN 94 (241)
T ss_pred hccCCcEEEE
Confidence 5667788875
No 319
>PRK07985 oxidoreductase; Provisional
Probab=83.62 E-value=13 Score=34.82 Aligned_cols=112 Identities=8% Similarity=0.076 Sum_probs=63.4
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----C--------CCCcEEEecCccChhhHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----P--------IEGVIQVQGDITNARTAE 109 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~--------i~gV~~i~gDIt~~~t~~ 109 (316)
++++|=.|+ .|+....+++.+.. .+.+|+.++..... . -..+.++++|+++.+.+.
T Consensus 49 ~k~vlITGa-s~gIG~aia~~L~~-----------~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 116 (294)
T PRK07985 49 DRKALVTGG-DSGIGRAAAIAYAR-----------EGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFAR 116 (294)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHH-----------CCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHH
Confidence 468888885 57788888888742 34678877654311 0 113667899999987665
Q ss_pred HHHhhc--CCccccEEEeCCCCC--CCCCCCc-----cHHHHHHHH--HHHHHHHHHcccCCcEEEE
Q 021161 110 VVIRHF--DGCKADLVVCDGAPD--VTGLHDM-----DEFVQSQLI--LAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 110 ~I~~~~--~~~~~DlVvsDgapd--vtG~~~~-----de~~~~~L~--~aaL~~a~~vLkpGG~fV~ 165 (316)
.+.+.. ..+.+|.++.+.+.. ...+.+. ++.++..+. ...+..+...++.+|++|.
T Consensus 117 ~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~ 183 (294)
T PRK07985 117 SLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIIT 183 (294)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEE
Confidence 544332 124689999875421 1112222 112222221 2234445556667888775
No 320
>PRK12742 oxidoreductase; Provisional
Probab=83.19 E-value=17 Score=32.09 Aligned_cols=73 Identities=18% Similarity=0.153 Sum_probs=47.8
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCCCcEEEecCccChhhHHHHHhhc
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHF 115 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~gV~~i~gDIt~~~t~~~I~~~~ 115 (316)
+++||=.|+ .|+....+++.+.. .+.+|+.+...... ...++..+..|+++...+....+.+
T Consensus 6 ~k~vlItGa-sggIG~~~a~~l~~-----------~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (237)
T PRK12742 6 GKKVLVLGG-SRGIGAAIVRRFVT-----------DGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKS 73 (237)
T ss_pred CCEEEEECC-CChHHHHHHHHHHH-----------CCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHh
Confidence 467887765 77788888887741 24577766543211 1125677889999987666555443
Q ss_pred CCccccEEEeCCC
Q 021161 116 DGCKADLVVCDGA 128 (316)
Q Consensus 116 ~~~~~DlVvsDga 128 (316)
.++|+|+...+
T Consensus 74 --~~id~li~~ag 84 (237)
T PRK12742 74 --GALDILVVNAG 84 (237)
T ss_pred --CCCcEEEECCC
Confidence 46999998864
No 321
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=83.10 E-value=16 Score=32.50 Aligned_cols=110 Identities=23% Similarity=0.235 Sum_probs=60.2
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCCCCCcEEEecCc--cCh--hhHHHHHhhcCCcc
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDI--TNA--RTAEVVIRHFDGCK 119 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~i~gV~~i~gDI--t~~--~t~~~I~~~~~~~~ 119 (316)
||+=-| |-|..-....+.... .+.-|..||+.+...-.--..+.+|- +.. ..+.++-+.+.+++
T Consensus 5 rVivYG-GkGALGSacv~~Fka-----------nnywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~gek 72 (236)
T KOG4022|consen 5 RVIVYG-GKGALGSACVEFFKA-----------NNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSLQGEK 72 (236)
T ss_pred eEEEEc-CcchHhHHHHHHHHh-----------cCeEEEEEeecccccccceEEecCCcchhHHHHHHHHHHHHhhcccc
Confidence 455444 677777777666542 35688999999865322212222322 111 12334445678899
Q ss_pred ccEEEeCCCCCCCCCCC-ccHHHH-----HHHH---HHHHHHHHHcccCCcEEEE
Q 021161 120 ADLVVCDGAPDVTGLHD-MDEFVQ-----SQLI---LAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 120 ~DlVvsDgapdvtG~~~-~de~~~-----~~L~---~aaL~~a~~vLkpGG~fV~ 165 (316)
+|.|+|-..--..|.-. .|-.-. .|-+ .-.-..|+..|||||-+-+
T Consensus 73 vDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~L 127 (236)
T KOG4022|consen 73 VDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQL 127 (236)
T ss_pred cceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeee
Confidence 99999974322222211 111111 1111 1234678899999998875
No 322
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.50 E-value=0.7 Score=40.45 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=35.1
Q ss_pred hcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCC
Q 021161 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (316)
Q Consensus 114 ~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~ 171 (316)
.|..+++|+|+|- |.+.+. ...-..++++++.++|||||.+-+.+-...
T Consensus 42 ~F~dns~d~iyae--------HvlEHl-t~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 42 MFEDNSVDAIYAE--------HVLEHL-TYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred cCCCcchHHHHHH--------HHHHHH-hHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 4777888888864 333332 223346789999999999999999775443
No 323
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=82.37 E-value=2.5 Score=37.12 Aligned_cols=46 Identities=26% Similarity=0.390 Sum_probs=28.4
Q ss_pred ccEEEeCCCCCCCCCC-----------CccHHHHHHHHHHHHHHHHHcccCCcEEEEEEc
Q 021161 120 ADLVVCDGAPDVTGLH-----------DMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (316)
Q Consensus 120 ~DlVvsDgapdvtG~~-----------~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 168 (316)
+|+|+.|.+-.+ +.. +.++| ...+...+..+.++|||||.+++-+-
T Consensus 1 VdliitDPPY~~-~~~~~~~~~~~~~~~~~~y--~~~~~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 1 VDLIITDPPYNI-GKDYNNYFDYGDNKNHEEY--LEWMEEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp EEEEEE---TSS-SCS-----CSCHCCHHHHH--HHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCEEEECCCCCC-CCCcchhhhccCCCCHHHH--HHHHHHHHHHHHhhcCCCeeEEEEec
Confidence 589999974332 222 11222 33456778999999999999998653
No 324
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=82.33 E-value=11 Score=37.27 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=71.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCC--C--CCCCCC---------------------CC-CCCCCEEEEEeCCCCC---
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYL--P--AKLSPD---------------------SR-EGDLPLIVAIDLQPMA--- 90 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~--~--~~~~~~---------------------~~-~~~~~~IvaVDl~~~~--- 90 (316)
+++...+|-=||.|-+..-.+-.... + ...++. .+ ..+-..++|+|+.+-.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 35579999999999998876654321 0 001100 00 0111157799999831
Q ss_pred --------CCC-CcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCc
Q 021161 91 --------PIE-GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG 161 (316)
Q Consensus 91 --------~i~-gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG 161 (316)
... -|+|.++|+++... .+ +.+|+||||. | -|.+--++.....|.......+.+.++--+
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~------~~--~~~gvvI~NP-P--YGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKE------PL--EEYGVVISNP-P--YGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCC------CC--CcCCEEEeCC-C--cchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 122 26889999998642 12 5899999996 3 344444554444465555666668888777
Q ss_pred EEEEE
Q 021161 162 KFIAK 166 (316)
Q Consensus 162 ~fV~K 166 (316)
.+|+.
T Consensus 339 ~~v~t 343 (381)
T COG0116 339 RYVFT 343 (381)
T ss_pred eEEEE
Confidence 77763
No 325
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=82.22 E-value=2.9 Score=39.51 Aligned_cols=119 Identities=21% Similarity=0.221 Sum_probs=64.6
Q ss_pred HHhhhHHcCC---cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCC---------------------------------
Q 021161 29 LLQIDEEFNI---FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPD--------------------------------- 72 (316)
Q Consensus 29 L~qId~~f~~---~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~--------------------------------- 72 (316)
+-+|.+.|.- -+...+||=-|||-|..+--++.+... ..+++.
T Consensus 41 ~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~ 119 (270)
T PF07942_consen 41 LDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQ 119 (270)
T ss_pred HHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCC
Confidence 3455555542 234679999999999999888876321 111000
Q ss_pred -CCCCCCCEEEEEeCCCCC---CCCCcEEEecCccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHH
Q 021161 73 -SREGDLPLIVAIDLQPMA---PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILA 148 (316)
Q Consensus 73 -~~~~~~~~IvaVDl~~~~---~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~a 148 (316)
+.++.-..|..-|+.|.. ...++....||.++.-.- .-..+++|.|++---.|+. +| +..
T Consensus 120 ~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~-----~~~~~~~d~VvT~FFIDTA--~N---------i~~ 183 (270)
T PF07942_consen 120 KSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGP-----DENKGSFDVVVTCFFIDTA--EN---------IIE 183 (270)
T ss_pred CCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCC-----cccCCcccEEEEEEEeech--HH---------HHH
Confidence 000001122223333321 123456667887764210 0013589999876433432 22 233
Q ss_pred HHHHHHHcccCCcEEE
Q 021161 149 GLTVVTHVLKEGGKFI 164 (316)
Q Consensus 149 aL~~a~~vLkpGG~fV 164 (316)
-+..+.++|||||..|
T Consensus 184 Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 184 YIETIEHLLKPGGYWI 199 (270)
T ss_pred HHHHHHHHhccCCEEE
Confidence 4778899999999776
No 326
>PRK06701 short chain dehydrogenase; Provisional
Probab=82.12 E-value=26 Score=32.63 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=63.6
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-------C----CCcEEEecCccChhhHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------I----EGVIQVQGDITNARTAEV 110 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-------i----~gV~~i~gDIt~~~t~~~ 110 (316)
++++|=.|+ .|+....+++++.. .+.+|+.++...... + ..+.++.+|+++...+..
T Consensus 46 ~k~iLItGa-sggIG~~la~~l~~-----------~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 113 (290)
T PRK06701 46 GKVALITGG-DSGIGRAVAVLFAK-----------EGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKD 113 (290)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHH-----------CCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 467888885 66677788877641 246788887764211 1 236788999999887655
Q ss_pred HHhhcC--CccccEEEeCCCCC--CCCCCCccH-----HHHHHHH--HHHHHHHHHcccCCcEEEE
Q 021161 111 VIRHFD--GCKADLVVCDGAPD--VTGLHDMDE-----FVQSQLI--LAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDgapd--vtG~~~~de-----~~~~~L~--~aaL~~a~~vLkpGG~fV~ 165 (316)
+++... ...+|.||...... ...+.+.+. .++..+. ...+..+...++++|++|.
T Consensus 114 ~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~ 179 (290)
T PRK06701 114 AVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIIN 179 (290)
T ss_pred HHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEE
Confidence 443221 13689999875421 111222221 1222221 2233444455677888876
No 327
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.72 E-value=11 Score=34.68 Aligned_cols=76 Identities=17% Similarity=0.076 Sum_probs=51.8
Q ss_pred CCeEEEECCC-CCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC---------CCCCCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcag-PG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~---------~~i~gV~~i~gDIt~~~t~~~I 111 (316)
++++|=.|++ .++.-..+++.+.. .+.+|+.++.... ..+..+..++.|+++....+.+
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~-----------~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~ 78 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRA-----------AGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAV 78 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHH-----------CCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHH
Confidence 4678888987 58899999998852 3467776654321 1123356789999998877665
Q ss_pred HhhcC--CccccEEEeCCC
Q 021161 112 IRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 112 ~~~~~--~~~~DlVvsDga 128 (316)
.+.+. -++.|++|.+..
T Consensus 79 ~~~~~~~~g~iD~lv~nAG 97 (272)
T PRK08159 79 FETLEKKWGKLDFVVHAIG 97 (272)
T ss_pred HHHHHHhcCCCcEEEECCc
Confidence 54331 147999999964
No 328
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.25 E-value=29 Score=31.61 Aligned_cols=76 Identities=13% Similarity=-0.021 Sum_probs=48.7
Q ss_pred CCeEEEECCCCC-HHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-----C----CCCCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAPG-SWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A----PIEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagPG-~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-----~----~i~gV~~i~gDIt~~~t~~~I 111 (316)
++.+|=-|++.| |....+++++.. .+.+|+.++.+.. . .......++.|+++....+.+
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~-----------~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~ 76 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKK-----------HGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNL 76 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHH-----------cCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHH
Confidence 467787888775 677777777641 2467877776531 0 112234568999998876665
Q ss_pred HhhcC--CccccEEEeCCC
Q 021161 112 IRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 112 ~~~~~--~~~~DlVvsDga 128 (316)
.+... -+++|++|.+.+
T Consensus 77 ~~~~~~~~g~iDilVnnag 95 (260)
T PRK06603 77 FDDIKEKWGSFDFLLHGMA 95 (260)
T ss_pred HHHHHHHcCCccEEEEccc
Confidence 54321 147999998764
No 329
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=80.91 E-value=9.7 Score=36.31 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=51.2
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCcEEEecCccCh---hhHHHH
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNA---RTAEVV 111 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt~~---~t~~~I 111 (316)
++++.+||=+|+ |+..+.+.+.... .+.+|+++|.++.. .--|++.+ -|..+. ...+.+
T Consensus 164 ~~~g~~VlV~G~--G~vG~~a~~~a~~-----------~G~~vi~~~~~~~~~~~~~~~Ga~~~-i~~~~~~~~~~~~~~ 229 (349)
T TIGR03201 164 LKKGDLVIVIGA--GGVGGYMVQTAKA-----------MGAAVVAIDIDPEKLEMMKGFGADLT-LNPKDKSAREVKKLI 229 (349)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCeEEEEcCCHHHHHHHHHhCCceE-ecCccccHHHHHHHH
Confidence 467889999997 5555544332210 13578999887632 11233211 121111 222333
Q ss_pred HhhcCCcccc----EEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 112 IRHFDGCKAD----LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 112 ~~~~~~~~~D----lVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
.+...+..+| +|+ +++|.. .++..+..+|++||+++.-
T Consensus 230 ~~~t~~~g~d~~~d~v~-----d~~g~~------------~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 230 KAFAKARGLRSTGWKIF-----ECSGSK------------PGQESALSLLSHGGTLVVV 271 (349)
T ss_pred HhhcccCCCCCCcCEEE-----ECCCCh------------HHHHHHHHHHhcCCeEEEE
Confidence 3333444565 444 234431 2345678899999999874
No 330
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=80.90 E-value=20 Score=37.50 Aligned_cols=71 Identities=15% Similarity=0.046 Sum_probs=47.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-------------------CCCcEEEecC
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------------------IEGVIQVQGD 101 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-------------------i~gV~~i~gD 101 (316)
.+.+||=.|+ +|+....+++++.. .+.+|++++.+.... ..++.++++|
T Consensus 79 ~gKvVLVTGA-TGgIG~aLAr~LLk-----------~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gD 146 (576)
T PLN03209 79 DEDLAFVAGA-TGKVGSRTVRELLK-----------LGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECD 146 (576)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHH-----------CCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEec
Confidence 5667777775 58889898888741 246788887654210 1247889999
Q ss_pred ccChhhHHHHHhhcCCccccEEEeCCC
Q 021161 102 ITNARTAEVVIRHFDGCKADLVVCDGA 128 (316)
Q Consensus 102 It~~~t~~~I~~~~~~~~~DlVvsDga 128 (316)
+++...+. +.+. .+|+||+..+
T Consensus 147 LtD~esI~---~aLg--giDiVVn~AG 168 (576)
T PLN03209 147 LEKPDQIG---PALG--NASVVICCIG 168 (576)
T ss_pred CCCHHHHH---HHhc--CCCEEEEccc
Confidence 99876443 3443 5899998753
No 331
>PRK08219 short chain dehydrogenase; Provisional
Probab=80.86 E-value=24 Score=30.66 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=51.2
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCCCcEEEecCccChhhHHHHHhhcC
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFD 116 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~gV~~i~gDIt~~~t~~~I~~~~~ 116 (316)
+++|=.|+ +|+....+++.+.. . .+|++++.++-. ..+++.++++|+++...+..+.+.+.
T Consensus 4 ~~vlVtG~-~g~iG~~l~~~l~~-----------~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 70 (227)
T PRK08219 4 PTALITGA-SRGIGAAIARELAP-----------T-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLG 70 (227)
T ss_pred CEEEEecC-CcHHHHHHHHHHHh-----------h-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcC
Confidence 46777776 58888888887741 3 679999877521 13468889999999887766665443
Q ss_pred CccccEEEeCCC
Q 021161 117 GCKADLVVCDGA 128 (316)
Q Consensus 117 ~~~~DlVvsDga 128 (316)
+.|.|+....
T Consensus 71 --~id~vi~~ag 80 (227)
T PRK08219 71 --RLDVLVHNAG 80 (227)
T ss_pred --CCCEEEECCC
Confidence 6899998754
No 332
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.85 E-value=10 Score=34.59 Aligned_cols=76 Identities=9% Similarity=-0.023 Sum_probs=50.6
Q ss_pred CCeEEEECC-CCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC---------CCCCCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCA-APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLca-gPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~---------~~i~gV~~i~gDIt~~~t~~~I 111 (316)
+++||=.|+ |.++.-..+++++.. .+.+|+.++.... ..+.....++.|+++.+..+.+
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 74 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKR-----------EGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDAL 74 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHH-----------CCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHH
Confidence 568888888 588899999988742 2467776654311 0122344678999998876665
Q ss_pred HhhcC--CccccEEEeCCC
Q 021161 112 IRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 112 ~~~~~--~~~~DlVvsDga 128 (316)
.+... .+++|+++.+..
T Consensus 75 ~~~~~~~~g~iD~lvnnAG 93 (260)
T PRK06997 75 FASLGQHWDGLDGLVHSIG 93 (260)
T ss_pred HHHHHHHhCCCcEEEEccc
Confidence 54321 157999999864
No 333
>PRK12744 short chain dehydrogenase; Provisional
Probab=80.66 E-value=14 Score=33.33 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=48.6
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC----------C----CCcEEEecCccChhh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------I----EGVIQVQGDITNART 107 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~----------i----~gV~~i~gDIt~~~t 107 (316)
+++||=.| |.|+....+++.+.. .+.+|+.++...... + ..+.++++|+++...
T Consensus 8 ~k~vlItG-a~~gIG~~~a~~l~~-----------~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~ 75 (257)
T PRK12744 8 GKVVLIAG-GAKNLGGLIARDLAA-----------QGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAA 75 (257)
T ss_pred CcEEEEEC-CCchHHHHHHHHHHH-----------CCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHH
Confidence 46788777 566788888888742 245766666543210 1 246788999999887
Q ss_pred HHHHHhhcC--CccccEEEeCCC
Q 021161 108 AEVVIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 108 ~~~I~~~~~--~~~~DlVvsDga 128 (316)
+..+.+... .+++|.|+.+.+
T Consensus 76 ~~~~~~~~~~~~~~id~li~~ag 98 (257)
T PRK12744 76 VEKLFDDAKAAFGRPDIAINTVG 98 (257)
T ss_pred HHHHHHHHHHhhCCCCEEEECCc
Confidence 665554321 146999999865
No 334
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=80.41 E-value=16 Score=32.35 Aligned_cols=97 Identities=20% Similarity=0.187 Sum_probs=53.5
Q ss_pred cCCcCCCCeEEEECCCC-CHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCcEEEecCccChhhHHH
Q 021161 36 FNIFEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 36 f~~~~~~~rVLDLcagP-G~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~ 110 (316)
...+.++.+||-.|+|+ |.....+++.. +.+|++++..+.. .-.|...+ -|..+......
T Consensus 129 ~~~~~~~~~vli~g~~~~G~~~~~~a~~~--------------g~~v~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~ 193 (271)
T cd05188 129 AGVLKPGDTVLVLGAGGVGLLAAQLAKAA--------------GARVIVTDRSDEKLELAKELGADHV-IDYKEEDLEEE 193 (271)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc--------------CCeEEEEcCCHHHHHHHHHhCCcee-ccCCcCCHHHH
Confidence 34457789999999876 33333344433 3688888877521 00122111 12222222233
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
+. ...+..+|+|+... |.. ..+..+...|+++|+++.
T Consensus 194 ~~-~~~~~~~d~vi~~~-----~~~------------~~~~~~~~~l~~~G~~v~ 230 (271)
T cd05188 194 LR-LTGGGGADVVIDAV-----GGP------------ETLAQALRLLRPGGRIVV 230 (271)
T ss_pred HH-HhcCCCCCEEEECC-----CCH------------HHHHHHHHhcccCCEEEE
Confidence 33 33456799999642 110 124556788999999986
No 335
>PRK07576 short chain dehydrogenase; Provisional
Probab=80.41 E-value=14 Score=33.67 Aligned_cols=76 Identities=12% Similarity=0.047 Sum_probs=50.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------C----CCCcEEEecCccChhhHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----IEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~----i~gV~~i~gDIt~~~t~~~ 110 (316)
.+.++|=.| |.|+....+++.+.. .+.+|++++..+-. . -..+.+++.|+++...+..
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~ 75 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFAR-----------AGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEA 75 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHH
Confidence 356788887 577788888777641 34689999876521 0 1245678899999876655
Q ss_pred HHhhcC--CccccEEEeCCC
Q 021161 111 VIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDga 128 (316)
..+... ..++|.|++..+
T Consensus 76 ~~~~~~~~~~~iD~vi~~ag 95 (264)
T PRK07576 76 AFAQIADEFGPIDVLVSGAA 95 (264)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 444321 136899998753
No 336
>PRK06101 short chain dehydrogenase; Provisional
Probab=80.36 E-value=34 Score=30.47 Aligned_cols=71 Identities=10% Similarity=0.053 Sum_probs=48.7
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCCCcEEEecCccChhhHHHHHhhcCC
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFDG 117 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~gV~~i~gDIt~~~t~~~I~~~~~~ 117 (316)
++|=.| |+|+....+++.+.. .+.+|+.++.++.. ...++.++++|+++....+.+.+....
T Consensus 3 ~vlItG-as~giG~~la~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 70 (240)
T PRK06101 3 AVLITG-ATSGIGKQLALDYAK-----------QGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPF 70 (240)
T ss_pred EEEEEc-CCcHHHHHHHHHHHh-----------CCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhccc
Confidence 345444 578899999888742 34688889876521 124688899999999887777666543
Q ss_pred ccccEEEeCC
Q 021161 118 CKADLVVCDG 127 (316)
Q Consensus 118 ~~~DlVvsDg 127 (316)
..|.++.+.
T Consensus 71 -~~d~~i~~a 79 (240)
T PRK06101 71 -IPELWIFNA 79 (240)
T ss_pred -CCCEEEEcC
Confidence 357776664
No 337
>PRK06940 short chain dehydrogenase; Provisional
Probab=80.34 E-value=19 Score=33.08 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=61.6
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC----CCcEEEecCccChhhHHHHHh
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i----~gV~~i~gDIt~~~t~~~I~~ 113 (316)
.+|=-|+ |+....+++++. .+.+|+.+|..+-. .+ ..+.+++.|+++.+....+.+
T Consensus 4 ~~lItGa--~gIG~~la~~l~------------~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~ 69 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVG------------AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAA 69 (275)
T ss_pred EEEEECC--ChHHHHHHHHHh------------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHH
Confidence 3444453 689999998884 24789988876521 01 136778999999887766655
Q ss_pred hcC-CccccEEEeCCCCCCCCCCCccHHHHHHHH--HHHHHHHHHcccCCcEEEE
Q 021161 114 HFD-GCKADLVVCDGAPDVTGLHDMDEFVQSQLI--LAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 114 ~~~-~~~~DlVvsDgapdvtG~~~~de~~~~~L~--~aaL~~a~~vLkpGG~fV~ 165 (316)
... .+++|+|+.+.+... ...++++.++..+. ...+..+...++.+|..+.
T Consensus 70 ~~~~~g~id~li~nAG~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 70 TAQTLGPVTGLVHTAGVSP-SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred HHHhcCCCCEEEECCCcCC-chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 431 147999999865321 11223333332221 2223444445556666543
No 338
>PRK09186 flagellin modification protein A; Provisional
Probab=80.31 E-value=17 Score=32.53 Aligned_cols=76 Identities=20% Similarity=0.110 Sum_probs=50.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------------CCCCcEEEecCccChhhH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------------~i~gV~~i~gDIt~~~t~ 108 (316)
.+++||=.|+ +|+....+++.+.. .+.+|+.++.++.. .-..+.++++|+++...+
T Consensus 3 ~~k~vlItGa-s~giG~~~a~~l~~-----------~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~ 70 (256)
T PRK09186 3 KGKTILITGA-GGLIGSALVKAILE-----------AGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESL 70 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----------CCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHH
Confidence 3466776665 57788898888742 34688888876532 012356779999998766
Q ss_pred HHHHhhcC--CccccEEEeCCC
Q 021161 109 EVVIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 109 ~~I~~~~~--~~~~DlVvsDga 128 (316)
..+.+... .+++|.||.+.+
T Consensus 71 ~~~~~~~~~~~~~id~vi~~A~ 92 (256)
T PRK09186 71 EEFLSKSAEKYGKIDGAVNCAY 92 (256)
T ss_pred HHHHHHHHHHcCCccEEEECCc
Confidence 55443321 146999998864
No 339
>PRK06483 dihydromonapterin reductase; Provisional
Probab=80.30 E-value=14 Score=32.80 Aligned_cols=74 Identities=9% Similarity=0.057 Sum_probs=50.1
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-----CCCcEEEecCccChhhHHHHHhhcC-
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIRHFD- 116 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-----i~gV~~i~gDIt~~~t~~~I~~~~~- 116 (316)
+++|=.|++ |++...+++++.. .+.+|+.++.++... ..++.++.+|+++........+...
T Consensus 3 k~vlItGas-~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 70 (236)
T PRK06483 3 APILITGAG-QRIGLALAWHLLA-----------QGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQ 70 (236)
T ss_pred ceEEEECCC-ChHHHHHHHHHHH-----------CCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHh
Confidence 467777755 6688888887742 346899888876421 1357788999999876655444321
Q ss_pred -CccccEEEeCCC
Q 021161 117 -GCKADLVVCDGA 128 (316)
Q Consensus 117 -~~~~DlVvsDga 128 (316)
-+++|.|+.+.+
T Consensus 71 ~~~~id~lv~~ag 83 (236)
T PRK06483 71 HTDGLRAIIHNAS 83 (236)
T ss_pred hCCCccEEEECCc
Confidence 136899998864
No 340
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=80.20 E-value=6.1 Score=35.75 Aligned_cols=76 Identities=9% Similarity=0.047 Sum_probs=52.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC--------CCCcEEEecCccChhhHHHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~--------i~gV~~i~gDIt~~~t~~~I~ 112 (316)
.++++|=.|+ .|++-..+++++.. .+.+|+.++.+.... -..+..++.|+++....+.+.
T Consensus 7 ~~k~~lItGa-s~gIG~aia~~l~~-----------~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (251)
T PRK12481 7 NGKVAIITGC-NTGLGQGMAIGLAK-----------AGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIV 74 (251)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHH
Confidence 4578888885 56788888888742 357888887654211 124678899999998777665
Q ss_pred hhcC--CccccEEEeCCC
Q 021161 113 RHFD--GCKADLVVCDGA 128 (316)
Q Consensus 113 ~~~~--~~~~DlVvsDga 128 (316)
+... -++.|.+|.+..
T Consensus 75 ~~~~~~~g~iD~lv~~ag 92 (251)
T PRK12481 75 SQAVEVMGHIDILINNAG 92 (251)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 5321 146999998864
No 341
>PRK05693 short chain dehydrogenase; Provisional
Probab=80.15 E-value=13 Score=33.91 Aligned_cols=74 Identities=11% Similarity=0.071 Sum_probs=50.2
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHhhc--CC
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHF--DG 117 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~~~--~~ 117 (316)
+||=.| |.|++...+++.+.. .+.+|++++.++.. .-.++..+++|+++......+.+.. ..
T Consensus 3 ~vlItG-asggiG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 70 (274)
T PRK05693 3 VVLITG-CSSGIGRALADAFKA-----------AGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEH 70 (274)
T ss_pred EEEEec-CCChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 455555 567888888887741 35689998877531 1136778899999987766555433 12
Q ss_pred ccccEEEeCCCC
Q 021161 118 CKADLVVCDGAP 129 (316)
Q Consensus 118 ~~~DlVvsDgap 129 (316)
+++|.|+.+.+.
T Consensus 71 ~~id~vi~~ag~ 82 (274)
T PRK05693 71 GGLDVLINNAGY 82 (274)
T ss_pred CCCCEEEECCCC
Confidence 479999998653
No 342
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=80.15 E-value=8.2 Score=40.68 Aligned_cols=141 Identities=14% Similarity=0.204 Sum_probs=80.0
Q ss_pred CCCCCcHHHHHHHHhCCchhhhhhHHh---hhHHcCCc-CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCE
Q 021161 5 SRDKRDIYYRKAKEEGWRARSAFKLLQ---IDEEFNIF-EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL 80 (316)
Q Consensus 5 s~~~rd~yyr~ak~~g~raRsa~KL~q---Id~~f~~~-~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~ 80 (316)
|.+=.|+|+=. +|...-|-++.++ |.++|.-. +..-+|+|+|=|+|--...+.+.......... .......+
T Consensus 20 s~~f~d~y~s~---~~~~~e~~~~f~~~~~l~~r~~~~~~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~-~~~~~~l~ 95 (662)
T PRK01747 20 SRQFDDVYFSN---DNGLEETRYVFLGGNGLPERWAEHPRRRFVIAETGFGTGLNFLATWQAFDQFRQRHP-PARLKRLH 95 (662)
T ss_pred cccCCCcccCC---CCHHHHhhhhhhcCCCHHHHHhcCCCCcEEEEecCcchHHHHHHHHHHHHHhhhhCC-CCCCceEE
Confidence 44556777642 4445556666654 34444322 33479999999999977776654410000000 00012358
Q ss_pred EEEEeCCCCCC---------------------------CCCc------------EEEecCccChhhHHHHHhhcCCcccc
Q 021161 81 IVAIDLQPMAP---------------------------IEGV------------IQVQGDITNARTAEVVIRHFDGCKAD 121 (316)
Q Consensus 81 IvaVDl~~~~~---------------------------i~gV------------~~i~gDIt~~~t~~~I~~~~~~~~~D 121 (316)
+++++.-|+.. ++|+ +.+.||+.+ .+..+. ..+|
T Consensus 96 ~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~l~l~~gd~~~------~~~~~~-~~~d 168 (662)
T PRK01747 96 FISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCHRLLFDDGRVTLDLWFGDANE------LLPQLD-ARAD 168 (662)
T ss_pred EEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCceEEEecCCcEEEEEEecCHHH------HHHhcc-cccc
Confidence 99999876420 1232 244577664 222233 4699
Q ss_pred EEEeCC-CCCCC-CCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 122 LVVCDG-APDVT-GLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 122 lVvsDg-apdvt-G~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
+|..|| +|... -+|+ ...+....++++|||+|+.-
T Consensus 169 ~~~lD~FsP~~np~~W~----------~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 169 AWFLDGFAPAKNPDMWS----------PNLFNALARLARPGATLATF 205 (662)
T ss_pred EEEeCCCCCccChhhcc----------HHHHHHHHHHhCCCCEEEEe
Confidence 999998 44321 1222 34467778899999999853
No 343
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.73 E-value=27 Score=32.13 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=51.2
Q ss_pred CCCeEEEECCCC-CHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-----C----CCCCcEEEecCccChhhHHH
Q 021161 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A----PIEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 41 ~~~rVLDLcagP-G~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-----~----~i~gV~~i~gDIt~~~t~~~ 110 (316)
.++++|=.|++. ++.-..+++++.. .+.+|+.++.+.. . .+.....++.|+++....+.
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~-----------~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~ 74 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAA-----------QGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDA 74 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHh-----------CCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHH
Confidence 357899999886 4788888888742 3468887775431 0 11223467899999877665
Q ss_pred HHhhcC--CccccEEEeCCC
Q 021161 111 VIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDga 128 (316)
+.+... -++.|++|.+..
T Consensus 75 ~~~~~~~~~g~iD~lVnnAG 94 (271)
T PRK06505 75 VFEALEKKWGKLDFVVHAIG 94 (271)
T ss_pred HHHHHHHHhCCCCEEEECCc
Confidence 554321 147999999864
No 344
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=79.70 E-value=25 Score=33.20 Aligned_cols=73 Identities=18% Similarity=0.037 Sum_probs=49.0
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-------CC--------CCcEEEecCccChh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PI--------EGVIQVQGDITNAR 106 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-------~i--------~gV~~i~gDIt~~~ 106 (316)
+++||=.| |+|.....+++++.. .+.+|++++..+.. .+ .++.++.+|+++..
T Consensus 6 ~~~vlVTG-atGfiG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 73 (340)
T PLN02653 6 RKVALITG-ITGQDGSYLTEFLLS-----------KGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDAS 73 (340)
T ss_pred CCEEEEEC-CCCccHHHHHHHHHH-----------CCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHH
Confidence 45677666 477788888888742 24688888765321 11 24788999999987
Q ss_pred hHHHHHhhcCCccccEEEeCCCC
Q 021161 107 TAEVVIRHFDGCKADLVVCDGAP 129 (316)
Q Consensus 107 t~~~I~~~~~~~~~DlVvsDgap 129 (316)
....+.+. ..+|+|+..++.
T Consensus 74 ~~~~~~~~---~~~d~Vih~A~~ 93 (340)
T PLN02653 74 SLRRWLDD---IKPDEVYNLAAQ 93 (340)
T ss_pred HHHHHHHH---cCCCEEEECCcc
Confidence 66554443 258999988754
No 345
>PLN02240 UDP-glucose 4-epimerase
Probab=79.47 E-value=40 Score=31.82 Aligned_cols=72 Identities=15% Similarity=0.091 Sum_probs=49.6
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------------CCCCcEEEecCccChhh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------------PIEGVIQVQGDITNART 107 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------------~i~gV~~i~gDIt~~~t 107 (316)
+++||=.| |+|....++++.+.. .+.+|+++|..... ...++.++.+|+++...
T Consensus 5 ~~~vlItG-atG~iG~~l~~~L~~-----------~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 72 (352)
T PLN02240 5 GRTILVTG-GAGYIGSHTVLQLLL-----------AGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEA 72 (352)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHH-----------CCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHH
Confidence 46788777 778888899888742 23689999854311 01357889999999876
Q ss_pred HHHHHhhcCCccccEEEeCCC
Q 021161 108 AEVVIRHFDGCKADLVVCDGA 128 (316)
Q Consensus 108 ~~~I~~~~~~~~~DlVvsDga 128 (316)
+..+.+ ...+|.|+.-.+
T Consensus 73 l~~~~~---~~~~d~vih~a~ 90 (352)
T PLN02240 73 LEKVFA---STRFDAVIHFAG 90 (352)
T ss_pred HHHHHH---hCCCCEEEEccc
Confidence 655443 236899988754
No 346
>PRK05717 oxidoreductase; Validated
Probab=79.14 E-value=18 Score=32.53 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=50.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC-CCcEEEecCccChhhHHHHHh
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i-~gV~~i~gDIt~~~t~~~I~~ 113 (316)
.+++||=.|++ |+....+++++.. .+.+|+.+|.++.. .+ ..+.++++|+++.......++
T Consensus 9 ~~k~vlItG~s-g~IG~~~a~~l~~-----------~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (255)
T PRK05717 9 NGRVALVTGAA-RGIGLGIAAWLIA-----------EGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVA 76 (255)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHH-----------cCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHH
Confidence 46788877765 6777788777741 24688888877531 12 247788999999876544333
Q ss_pred hcC--CccccEEEeCCC
Q 021161 114 HFD--GCKADLVVCDGA 128 (316)
Q Consensus 114 ~~~--~~~~DlVvsDga 128 (316)
... -+++|.|+...+
T Consensus 77 ~~~~~~g~id~li~~ag 93 (255)
T PRK05717 77 EVLGQFGRLDALVCNAA 93 (255)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 221 136999999864
No 347
>PRK07023 short chain dehydrogenase; Provisional
Probab=79.12 E-value=33 Score=30.48 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=49.8
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-----CCCcEEEecCccChhhHHHHHh----
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIR---- 113 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-----i~gV~~i~gDIt~~~t~~~I~~---- 113 (316)
+++|=.| |+|++...+++++.. .+.+|+.++.++... -..+..+++|+++...+..+..
T Consensus 2 ~~vlItG-asggiG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 69 (243)
T PRK07023 2 VRAIVTG-HSRGLGAALAEQLLQ-----------PGIAVLGVARSRHPSLAAAAGERLAEVELDLSDAAAAAAWLAGDLL 69 (243)
T ss_pred ceEEEec-CCcchHHHHHHHHHh-----------CCCEEEEEecCcchhhhhccCCeEEEEEeccCCHHHHHHHHHHHHH
Confidence 3677777 578899999988741 346888888765321 1247788999999887666322
Q ss_pred -hc-CCccccEEEeCCC
Q 021161 114 -HF-DGCKADLVVCDGA 128 (316)
Q Consensus 114 -~~-~~~~~DlVvsDga 128 (316)
.+ ...+.|.|+.+.+
T Consensus 70 ~~~~~~~~~~~~v~~ag 86 (243)
T PRK07023 70 AAFVDGASRVLLINNAG 86 (243)
T ss_pred HHhccCCCceEEEEcCc
Confidence 22 2246888888864
No 348
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=78.88 E-value=28 Score=33.16 Aligned_cols=72 Identities=14% Similarity=0.032 Sum_probs=50.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------CCCCcEEEecCccChhhHHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~i~gV~~i~gDIt~~~t~~~I 111 (316)
.+++||=.|+ +|....++++.+.. .+.+|++++..+.. ...+++++.+|+++......+
T Consensus 9 ~~~~vLVtG~-~GfIG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (353)
T PLN02896 9 ATGTYCVTGA-TGYIGSWLVKLLLQ-----------RGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEA 76 (353)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHH-----------CCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHH
Confidence 4578887774 78999999888741 24688888765431 123578899999998755443
Q ss_pred HhhcCCccccEEEeCCCC
Q 021161 112 IRHFDGCKADLVVCDGAP 129 (316)
Q Consensus 112 ~~~~~~~~~DlVvsDgap 129 (316)
+ . .+|.|+.-++.
T Consensus 77 ~---~--~~d~Vih~A~~ 89 (353)
T PLN02896 77 V---K--GCDGVFHVAAS 89 (353)
T ss_pred H---c--CCCEEEECCcc
Confidence 3 2 48999987754
No 349
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=78.54 E-value=36 Score=30.89 Aligned_cols=77 Identities=16% Similarity=0.054 Sum_probs=51.4
Q ss_pred CCCeEEEECCC-CCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------------CCCCcEEEecCccChhh
Q 021161 41 GVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNART 107 (316)
Q Consensus 41 ~~~rVLDLcag-PG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------------~i~gV~~i~gDIt~~~t 107 (316)
.++++|=.|++ .++.-..+++++.. .+.+|+.++..... ....+..++.|+++.+.
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 73 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHA-----------AGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQ 73 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHH-----------CCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHH
Confidence 45788999985 68999999988752 34577655433210 11235678899999887
Q ss_pred HHHHHhhcC--CccccEEEeCCC
Q 021161 108 AEVVIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 108 ~~~I~~~~~--~~~~DlVvsDga 128 (316)
++.+.+... .+++|+++.+.+
T Consensus 74 v~~~~~~~~~~~g~iD~lv~nag 96 (258)
T PRK07370 74 IEETFETIKQKWGKLDILVHCLA 96 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEEccc
Confidence 665554331 147999999865
No 350
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=78.34 E-value=44 Score=31.01 Aligned_cols=72 Identities=19% Similarity=0.136 Sum_probs=48.6
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC------------CCCcEEEecCccChhhHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------IEGVIQVQGDITNARTAE 109 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~------------i~gV~~i~gDIt~~~t~~ 109 (316)
+++||=.|+ +|....++++++.. .+.+|++++..+... .++++++++|+++.....
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 71 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQ-----------RGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFD 71 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHH-----------CCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHH
Confidence 456776664 78899999888742 245787776654210 136789999999977554
Q ss_pred HHHhhcCCccccEEEeCCCCC
Q 021161 110 VVIRHFDGCKADLVVCDGAPD 130 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapd 130 (316)
.+. . .+|.|+.-.++.
T Consensus 72 ~~~---~--~~d~Vih~A~~~ 87 (322)
T PLN02662 72 SVV---D--GCEGVFHTASPF 87 (322)
T ss_pred HHH---c--CCCEEEEeCCcc
Confidence 443 2 489999887653
No 351
>PRK07102 short chain dehydrogenase; Provisional
Probab=78.32 E-value=22 Score=31.58 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=51.3
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhHHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~~~I 111 (316)
++||=.| |+|+....+++++.. .+.+|++++..+-. .-.++.++++|+++....+.+
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~-----------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 69 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAA-----------AGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAF 69 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHh-----------cCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHH
Confidence 4677677 568899999888742 24689988877631 113578899999998877666
Q ss_pred HhhcCCccccEEEeCCC
Q 021161 112 IRHFDGCKADLVVCDGA 128 (316)
Q Consensus 112 ~~~~~~~~~DlVvsDga 128 (316)
.+... ..+|.|++...
T Consensus 70 ~~~~~-~~~d~vv~~ag 85 (243)
T PRK07102 70 LDSLP-ALPDIVLIAVG 85 (243)
T ss_pred HHHHh-hcCCEEEECCc
Confidence 55443 35799998753
No 352
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=78.24 E-value=16 Score=32.84 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=50.1
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-------C-CCcEEEecCccChhhHHHHHh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------I-EGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-------i-~gV~~i~gDIt~~~t~~~I~~ 113 (316)
++++|=.|+ .|+....+++++.. .+.+|+++|...... . ..+..++.|+++.+.++.+.+
T Consensus 10 ~k~~lItG~-~~gIG~a~a~~l~~-----------~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 77 (253)
T PRK08993 10 GKVAVVTGC-DTGLGQGMALGLAE-----------AGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLE 77 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHH-----------CCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 467777775 67788888888741 357899988765211 1 236778999999876665443
Q ss_pred hc--CCccccEEEeCCC
Q 021161 114 HF--DGCKADLVVCDGA 128 (316)
Q Consensus 114 ~~--~~~~~DlVvsDga 128 (316)
.. ..++.|+|+.+.+
T Consensus 78 ~~~~~~~~~D~li~~Ag 94 (253)
T PRK08993 78 RAVAEFGHIDILVNNAG 94 (253)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 32 1147999998764
No 353
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=78.05 E-value=10 Score=35.70 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=53.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCE-EEEEeCCCCC----CCCCcEEEecCccChhhHHHHHhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL-IVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~-IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
+++.+||=+|+ |+..+.+.+.... .+.+ |+++|..+.. .--|+..+ -|..+.. .+.+.+.
T Consensus 162 ~~g~~vlV~G~--G~vG~~~~~~ak~-----------~G~~~vi~~~~~~~~~~~~~~~ga~~~-i~~~~~~-~~~~~~~ 226 (339)
T cd08239 162 SGRDTVLVVGA--GPVGLGALMLARA-----------LGAEDVIGVDPSPERLELAKALGADFV-INSGQDD-VQEIREL 226 (339)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCEEEEECCCHHHHHHHHHhCCCEE-EcCCcch-HHHHHHH
Confidence 56888888864 6666665443210 1245 8888876532 11133221 1222222 3445544
Q ss_pred cCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 115 ~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
..+..+|+|+- ++|.. ..+..+.+.|+++|++++-
T Consensus 227 ~~~~~~d~vid-----~~g~~------------~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 227 TSGAGADVAIE-----CSGNT------------AARRLALEAVRPWGRLVLV 261 (339)
T ss_pred hCCCCCCEEEE-----CCCCH------------HHHHHHHHHhhcCCEEEEE
Confidence 45567999983 33321 2345678899999999863
No 354
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.44 E-value=36 Score=31.46 Aligned_cols=76 Identities=12% Similarity=0.039 Sum_probs=51.6
Q ss_pred CCeEEEECCCC-CHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-----C----CCCCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A----PIEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagP-G~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-----~----~i~gV~~i~gDIt~~~t~~~I 111 (316)
++.||=.|++. +|.-..+++++.. .+.+|+.++.+.. . .+.+-..++.|+++.+..+.+
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~-----------~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 73 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFE-----------QGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSL 73 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHH-----------CCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHH
Confidence 56888888874 6888999988752 3468887777631 1 112125678999998876665
Q ss_pred HhhcC--CccccEEEeCCC
Q 021161 112 IRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 112 ~~~~~--~~~~DlVvsDga 128 (316)
.+... .+++|++|.+..
T Consensus 74 ~~~i~~~~g~iDilVnnAG 92 (274)
T PRK08415 74 AESLKKDLGKIDFIVHSVA 92 (274)
T ss_pred HHHHHHHcCCCCEEEECCc
Confidence 54431 257999999864
No 355
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.33 E-value=11 Score=34.87 Aligned_cols=82 Identities=20% Similarity=0.185 Sum_probs=61.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCC--CCCCC---CCcEEEecCccChhhHHHHHhh-
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ--PMAPI---EGVIQVQGDITNARTAEVVIRH- 114 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~--~~~~i---~gV~~i~gDIt~~~t~~~I~~~- 114 (316)
....||=.||..||+.-.|++.+.. ++..|+|.-.+ +|+.+ .|+....-|+++++.+..+...
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~-----------~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~ev 74 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFAR-----------NGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEV 74 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHh-----------CCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHH
Confidence 4568999999999999999998752 45788877654 46544 3788889999998766554432
Q ss_pred --cCCccccEEEeCCCCCCCC
Q 021161 115 --FDGCKADLVVCDGAPDVTG 133 (316)
Q Consensus 115 --~~~~~~DlVvsDgapdvtG 133 (316)
+..++.|+.+-+..-.|++
T Consensus 75 r~~~~Gkld~L~NNAG~~C~~ 95 (289)
T KOG1209|consen 75 RANPDGKLDLLYNNAGQSCTF 95 (289)
T ss_pred hhCCCCceEEEEcCCCCCccc
Confidence 3568999999997544554
No 356
>PHA01634 hypothetical protein
Probab=77.21 E-value=3.3 Score=35.22 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=40.2
Q ss_pred cHHHHHHHHhCCchhhhhhHHhhhHHcCCcC-CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCC
Q 021161 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFE-GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (316)
Q Consensus 10 d~yyr~ak~~g~raRsa~KL~qId~~f~~~~-~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~ 88 (316)
+-|||+-+=.=|| +--.+|+.+. .+.+|+|+||+-|+-+.+.+-+. ..+|+|++..+
T Consensus 4 ~~yf~~~~c~ywr--------ey~~~Y~~idvk~KtV~dIGA~iGdSaiYF~l~G--------------AK~Vva~E~~~ 61 (156)
T PHA01634 4 EEYFRKLECDYWR--------EYPHAYGMLNVYQRTIQIVGADCGSSALYFLLRG--------------ASFVVQYEKEE 61 (156)
T ss_pred HHHHHHccchHHH--------HHHHHhhheeecCCEEEEecCCccchhhHHhhcC--------------ccEEEEeccCH
Confidence 3466655444455 2233444442 67899999999999998887653 35899999887
Q ss_pred C
Q 021161 89 M 89 (316)
Q Consensus 89 ~ 89 (316)
.
T Consensus 62 k 62 (156)
T PHA01634 62 K 62 (156)
T ss_pred H
Confidence 3
No 357
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=76.94 E-value=29 Score=31.16 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=51.2
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC-CCcEEEecCccChhhHHHHHhh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i-~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
+++||=.| |.|+....+++.+.. .+.+|+.+|.+... .+ ..+.++++|+++......+.+.
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLA-----------EGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAA 73 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHH-----------cCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHH
Confidence 45677666 667888888888742 34689888877632 11 2477889999998876665543
Q ss_pred cC--CccccEEEeCCC
Q 021161 115 FD--GCKADLVVCDGA 128 (316)
Q Consensus 115 ~~--~~~~DlVvsDga 128 (316)
.. .++.|.|+...+
T Consensus 74 ~~~~~~~id~li~~ag 89 (257)
T PRK07067 74 AVERFGGIDILFNNAA 89 (257)
T ss_pred HHHHcCCCCEEEECCC
Confidence 21 146899998754
No 358
>PLN02253 xanthoxin dehydrogenase
Probab=76.84 E-value=24 Score=32.13 Aligned_cols=75 Identities=13% Similarity=0.059 Sum_probs=51.1
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC---CCcEEEecCccChhhHHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i---~gV~~i~gDIt~~~t~~~I~ 112 (316)
++++|=.| |.|++...+++++.. .+.+|+.+|..+.. .+ .++.++++|+++.+.+....
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 85 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHK-----------HGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAV 85 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHH
Confidence 56788777 457788888888741 34688888876421 11 25788999999987765544
Q ss_pred hhcC--CccccEEEeCCC
Q 021161 113 RHFD--GCKADLVVCDGA 128 (316)
Q Consensus 113 ~~~~--~~~~DlVvsDga 128 (316)
+... .+++|.|+...+
T Consensus 86 ~~~~~~~g~id~li~~Ag 103 (280)
T PLN02253 86 DFTVDKFGTLDIMVNNAG 103 (280)
T ss_pred HHHHHHhCCCCEEEECCC
Confidence 3211 146999999865
No 359
>PRK08324 short chain dehydrogenase; Validated
Probab=76.67 E-value=25 Score=37.23 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=50.9
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC---CCcEEEecCccChhhHHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i---~gV~~i~gDIt~~~t~~~I~ 112 (316)
+++||=.|+ .|+....+++.+.. .+.+|+.+|.++-. .+ .++.++++|+++...+..+.
T Consensus 422 gk~vLVTGa-sggIG~~la~~L~~-----------~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~ 489 (681)
T PRK08324 422 GKVALVTGA-AGGIGKATAKRLAA-----------EGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAF 489 (681)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHH-----------CcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHH
Confidence 567776665 57788888877641 24689999987631 11 26788999999987665544
Q ss_pred hhc--CCccccEEEeCCC
Q 021161 113 RHF--DGCKADLVVCDGA 128 (316)
Q Consensus 113 ~~~--~~~~~DlVvsDga 128 (316)
+.. ..+.+|+|+...+
T Consensus 490 ~~~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 490 EEAALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 322 1136999998864
No 360
>PRK07856 short chain dehydrogenase; Provisional
Probab=76.50 E-value=56 Score=29.18 Aligned_cols=75 Identities=8% Similarity=0.035 Sum_probs=50.1
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--CCCCcEEEecCccChhhHHHHHhhcC--C
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITNARTAEVVIRHFD--G 117 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--~i~gV~~i~gDIt~~~t~~~I~~~~~--~ 117 (316)
++++|=.| |+|+....+++++.. .+.+|+.++..+.. .-.++.++++|+++....+.+.+... .
T Consensus 6 ~k~~lItG-as~gIG~~la~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 73 (252)
T PRK07856 6 GRVVLVTG-GTRGIGAGIARAFLA-----------AGATVVVCGRRAPETVDGRPAEFHAADVRDPDQVAALVDAIVERH 73 (252)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHH-----------CCCEEEEEeCChhhhhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45666555 567788888888741 24688888876532 12357888999999876665543321 1
Q ss_pred ccccEEEeCCC
Q 021161 118 CKADLVVCDGA 128 (316)
Q Consensus 118 ~~~DlVvsDga 128 (316)
+++|+|+.+.+
T Consensus 74 ~~id~vi~~ag 84 (252)
T PRK07856 74 GRLDVLVNNAG 84 (252)
T ss_pred CCCCEEEECCC
Confidence 46899999864
No 361
>PRK12939 short chain dehydrogenase; Provisional
Probab=76.49 E-value=19 Score=31.88 Aligned_cols=75 Identities=11% Similarity=-0.012 Sum_probs=50.7
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------C----CCCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----IEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~----i~gV~~i~gDIt~~~t~~~I 111 (316)
++++|=.| |.|+..+.+++.+.. .+.+|+.++..+.. . -..+.++++|+++...+..+
T Consensus 7 ~~~vlItG-a~g~iG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (250)
T PRK12939 7 GKRALVTG-AARGLGAAFAEALAE-----------AGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRF 74 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 46777555 578899999988742 24688888876531 0 12478889999998766555
Q ss_pred HhhcC--CccccEEEeCCC
Q 021161 112 IRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 112 ~~~~~--~~~~DlVvsDga 128 (316)
.+... -+++|.|+...+
T Consensus 75 ~~~~~~~~~~id~vi~~ag 93 (250)
T PRK12939 75 FDAAAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 44321 147999998754
No 362
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=76.21 E-value=23 Score=32.43 Aligned_cols=68 Identities=19% Similarity=0.157 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCC-------CC---CCCCcEEEecCccChhhHHHHHhhcCCcc
Q 021161 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-------MA---PIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (316)
Q Consensus 50 agPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~-------~~---~i~gV~~i~gDIt~~~t~~~I~~~~~~~~ 119 (316)
-|+|....++++++.. .+...+|+++|... +. ..+++.++.+|+++...+.++.+ +..
T Consensus 6 GatG~iG~~l~~~l~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~~ 73 (317)
T TIGR01181 6 GGAGFIGSNFVRYILN---------EHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFT---EHQ 73 (317)
T ss_pred cCCchHHHHHHHHHHH---------hCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHh---hcC
Confidence 4789999999988741 11235788887532 11 12367889999999876655543 235
Q ss_pred ccEEEeCCCC
Q 021161 120 ADLVVCDGAP 129 (316)
Q Consensus 120 ~DlVvsDgap 129 (316)
+|.|+.-.+.
T Consensus 74 ~d~vi~~a~~ 83 (317)
T TIGR01181 74 PDAVVHFAAE 83 (317)
T ss_pred CCEEEEcccc
Confidence 8999987653
No 363
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.06 E-value=24 Score=35.02 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=50.1
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-------CCCcEEEecCccChhhHHHHHhh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------IEGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-------i~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
+.++|=.|+ .|+....+++++.. .+.+|+.+|...... --+...++.|+++......+.+.
T Consensus 210 g~~vlItGa-sggIG~~la~~l~~-----------~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~ 277 (450)
T PRK08261 210 GKVALVTGA-ARGIGAAIAEVLAR-----------DGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEH 277 (450)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHH-----------CCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHH
Confidence 467777775 57788888887741 357899998754211 12456788999998876665554
Q ss_pred cC--CccccEEEeCCC
Q 021161 115 FD--GCKADLVVCDGA 128 (316)
Q Consensus 115 ~~--~~~~DlVvsDga 128 (316)
.. .+++|.|+....
T Consensus 278 ~~~~~g~id~vi~~AG 293 (450)
T PRK08261 278 LAERHGGLDIVVHNAG 293 (450)
T ss_pred HHHhCCCCCEEEECCC
Confidence 32 136899998864
No 364
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=76.03 E-value=13 Score=35.16 Aligned_cols=97 Identities=12% Similarity=0.085 Sum_probs=51.8
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCC-EEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~-~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~ 113 (316)
++++.+||=+|+ |+..+.+.+.... .+. .|+++|.++.. .--|+..+- |..+.. ..++.+
T Consensus 158 ~~~g~~vlV~G~--g~vG~~~~~~a~~-----------~G~~~v~~~~~~~~~~~~~~~~Ga~~~i-~~~~~~-~~~~~~ 222 (347)
T PRK10309 158 GCEGKNVIIIGA--GTIGLLAIQCAVA-----------LGAKSVTAIDINSEKLALAKSLGAMQTF-NSREMS-APQIQS 222 (347)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCeEEEECCCHHHHHHHHHcCCceEe-cCcccC-HHHHHH
Confidence 357788888875 5566554433210 124 47888876632 112332111 111111 233444
Q ss_pred hcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 114 ~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
...+..+|.++-| ++|.. ..+..+.++|++||++++-
T Consensus 223 ~~~~~~~d~~v~d----~~G~~------------~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 223 VLRELRFDQLILE----TAGVP------------QTVELAIEIAGPRAQLALV 259 (347)
T ss_pred HhcCCCCCeEEEE----CCCCH------------HHHHHHHHHhhcCCEEEEE
Confidence 4555678844433 44431 2456778999999999874
No 365
>PRK06172 short chain dehydrogenase; Provisional
Probab=75.94 E-value=29 Score=31.02 Aligned_cols=75 Identities=9% Similarity=0.037 Sum_probs=51.0
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------C-CCCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~-i~gV~~i~gDIt~~~t~~~I 111 (316)
+.+||=.|+ .|+....+++++.. .+.+|+.++.++.. . -..+..+++|+++...+..+
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~ 74 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAR-----------EGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKAL 74 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 567888885 67788888887741 24689999887531 0 12477889999998766554
Q ss_pred Hhhc--CCccccEEEeCCC
Q 021161 112 IRHF--DGCKADLVVCDGA 128 (316)
Q Consensus 112 ~~~~--~~~~~DlVvsDga 128 (316)
.+.. ..+++|.|++..+
T Consensus 75 ~~~~~~~~g~id~li~~ag 93 (253)
T PRK06172 75 VEQTIAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHHHHHhCCCCEEEECCC
Confidence 4322 1146899999865
No 366
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=75.47 E-value=16 Score=33.83 Aligned_cols=95 Identities=19% Similarity=0.133 Sum_probs=58.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCC-----CC-----CCCCcEEEecCccChhhHH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-----MA-----PIEGVIQVQGDITNARTAE 109 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~-----~~-----~i~gV~~i~gDIt~~~t~~ 109 (316)
.+|.|||.+|-|=|.....+-++-+ .-++ -|+-.| |. .-++|..+.|--.+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p-------------~~H~-IiE~hp~V~krmr~~gw~ek~nViil~g~WeD----- 160 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP-------------DEHW-IIEAHPDVLKRMRDWGWREKENVIILEGRWED----- 160 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC-------------cceE-EEecCHHHHHHHHhcccccccceEEEecchHh-----
Confidence 6788999999999987776655432 2232 233333 21 23578888774443
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
++..+..+.||-|.-|-- +-+ .+-++....-+.++|||+|.|-.
T Consensus 161 -vl~~L~d~~FDGI~yDTy----~e~-------yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 161 -VLNTLPDKHFDGIYYDTY----SEL-------YEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred -hhccccccCcceeEeech----hhH-------HHHHHHHHHHHhhhcCCCceEEE
Confidence 223355667999997741 111 12223344578899999998865
No 367
>PRK08339 short chain dehydrogenase; Provisional
Probab=75.39 E-value=22 Score=32.50 Aligned_cols=76 Identities=12% Similarity=0.081 Sum_probs=51.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC-----CCcEEEecCccChhhHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-----EGVIQVQGDITNARTAE 109 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i-----~gV~~i~gDIt~~~t~~ 109 (316)
.++++|=.|++ |+.-..+++++.. .+.+|+.++.++.. .+ .++..+++|+++....+
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~ 74 (263)
T PRK08339 7 SGKLAFTTASS-KGIGFGVARVLAR-----------AGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLE 74 (263)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHH
Confidence 35677777765 5678888887742 34688888876421 11 24778899999988766
Q ss_pred HHHhhcC-CccccEEEeCCC
Q 021161 110 VVIRHFD-GCKADLVVCDGA 128 (316)
Q Consensus 110 ~I~~~~~-~~~~DlVvsDga 128 (316)
.+.+... -+..|+++.+.+
T Consensus 75 ~~~~~~~~~g~iD~lv~nag 94 (263)
T PRK08339 75 RTVKELKNIGEPDIFFFSTG 94 (263)
T ss_pred HHHHHHHhhCCCcEEEECCC
Confidence 6555331 146999998864
No 368
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=74.83 E-value=1.2 Score=43.72 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=16.8
Q ss_pred HHHHHHHcccCCcEEEEEEccCC
Q 021161 149 GLTVVTHVLKEGGKFIAKIFRGK 171 (316)
Q Consensus 149 aL~~a~~vLkpGG~fV~Kif~~~ 171 (316)
-+.-.+.++.|||.||+ +-+|.
T Consensus 207 ~ie~lw~l~~~gg~lVi-vErGt 228 (484)
T COG5459 207 NIERLWNLLAPGGHLVI-VERGT 228 (484)
T ss_pred HHHHHHHhccCCCeEEE-EeCCC
Confidence 35667889999999998 55654
No 369
>PRK07774 short chain dehydrogenase; Provisional
Probab=74.59 E-value=27 Score=31.06 Aligned_cols=75 Identities=20% Similarity=0.155 Sum_probs=50.4
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------C----CCCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----IEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~----i~gV~~i~gDIt~~~t~~~I 111 (316)
+.++|=.| |.|+....+++.+.. .+.+|+.++..+.. . ..++.++..|+++...++.+
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~-----------~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (250)
T PRK07774 6 DKVAIVTG-AAGGIGQAYAEALAR-----------EGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAM 73 (250)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHH
Confidence 45677666 678889999888742 24689999877531 0 12467889999998766554
Q ss_pred Hhhc--CCccccEEEeCCC
Q 021161 112 IRHF--DGCKADLVVCDGA 128 (316)
Q Consensus 112 ~~~~--~~~~~DlVvsDga 128 (316)
.+.. ...++|.|++..+
T Consensus 74 ~~~~~~~~~~id~vi~~ag 92 (250)
T PRK07774 74 ADATVSAFGGIDYLVNNAA 92 (250)
T ss_pred HHHHHHHhCCCCEEEECCC
Confidence 4322 1136999999864
No 370
>PRK06194 hypothetical protein; Provisional
Probab=74.32 E-value=56 Score=29.78 Aligned_cols=76 Identities=18% Similarity=0.095 Sum_probs=50.6
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC----CCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i----~gV~~i~gDIt~~~t~~~I 111 (316)
+++||=.| |.|+....+++++.. .+.+|+.+|..... .+ ..+.++.+|+++...+..+
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 73 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAA-----------LGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEAL 73 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHH-----------CCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 45777666 557788888887742 34689988876421 01 2467789999998766555
Q ss_pred Hhhc--CCccccEEEeCCCC
Q 021161 112 IRHF--DGCKADLVVCDGAP 129 (316)
Q Consensus 112 ~~~~--~~~~~DlVvsDgap 129 (316)
.+.. ..+++|+|+...+.
T Consensus 74 ~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 74 ADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 4432 11468999999754
No 371
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=74.20 E-value=17 Score=33.53 Aligned_cols=94 Identities=19% Similarity=0.121 Sum_probs=50.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCC-EEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~-~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
.++.+||=.|+ |+..+.+.+.... .+. +|+++|.++.. .--|+..+. |..+. .+.+.+.
T Consensus 119 ~~g~~VlV~G~--G~vG~~~~~~ak~-----------~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i-~~~~~--~~~~~~~ 182 (280)
T TIGR03366 119 LKGRRVLVVGA--GMLGLTAAAAAAA-----------AGAARVVAADPSPDRRELALSFGATALA-EPEVL--AERQGGL 182 (280)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCEEEEECCCHHHHHHHHHcCCcEec-Cchhh--HHHHHHH
Confidence 36788888875 5555544332210 124 48888877632 112332211 21111 2233333
Q ss_pred cCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 115 ~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
..+..+|+|+- ++|. ..++..+..+|++||++++-
T Consensus 183 ~~~~g~d~vid-----~~G~------------~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 183 QNGRGVDVALE-----FSGA------------TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred hCCCCCCEEEE-----CCCC------------hHHHHHHHHHhcCCCEEEEe
Confidence 34456999984 3332 13456778999999999864
No 372
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=73.82 E-value=27 Score=31.20 Aligned_cols=76 Identities=9% Similarity=0.028 Sum_probs=51.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------C-CCCcEEEecCccChhhHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~-i~gV~~i~gDIt~~~t~~~ 110 (316)
.++++|=.|+ .|+....+++.+.. .+.+|+.++..+.. . -..+..+++|+++...+..
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 77 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAG-----------AGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAA 77 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----------cCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 4678888885 67788888887741 34689999887521 0 1247788999999877655
Q ss_pred HHhhcC--CccccEEEeCCC
Q 021161 111 VIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDga 128 (316)
+.+... -+++|.|+....
T Consensus 78 ~~~~~~~~~~~id~vi~~ag 97 (256)
T PRK06124 78 AFARIDAEHGRLDILVNNVG 97 (256)
T ss_pred HHHHHHHhcCCCCEEEECCC
Confidence 444321 146899998854
No 373
>PRK12746 short chain dehydrogenase; Provisional
Probab=73.82 E-value=59 Score=28.91 Aligned_cols=112 Identities=13% Similarity=0.191 Sum_probs=61.5
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEE-eCCCCC------CC----CCcEEEecCccChhhHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAI-DLQPMA------PI----EGVIQVQGDITNARTAEV 110 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaV-Dl~~~~------~i----~gV~~i~gDIt~~~t~~~ 110 (316)
+.++|=.|+ .|+....+++.+.. .+.+|+.+ ...... .+ ..+..+++|+++......
T Consensus 6 ~~~ilItGa-sg~iG~~la~~l~~-----------~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~ 73 (254)
T PRK12746 6 GKVALVTGA-SRGIGRAIAMRLAN-----------DGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKK 73 (254)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHH
Confidence 467887774 68889999888741 23455543 222210 11 236788999999887655
Q ss_pred HHhhc--------CCccccEEEeCCCCCCCC-CCCccHH-----HHHHH--HHHHHHHHHHcccCCcEEEE
Q 021161 111 VIRHF--------DGCKADLVVCDGAPDVTG-LHDMDEF-----VQSQL--ILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 111 I~~~~--------~~~~~DlVvsDgapdvtG-~~~~de~-----~~~~L--~~aaL~~a~~vLkpGG~fV~ 165 (316)
..+.+ ....+|.|++..+....+ ..+.+.. ++..+ ....++.+...|+..|.||.
T Consensus 74 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~ 144 (254)
T PRK12746 74 LVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVIN 144 (254)
T ss_pred HHHHHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEE
Confidence 44322 124699999886432222 2222211 11111 12334455556666777776
No 374
>PRK07814 short chain dehydrogenase; Provisional
Probab=73.53 E-value=12 Score=33.98 Aligned_cols=76 Identities=9% Similarity=-0.053 Sum_probs=52.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------C----CCCcEEEecCccChhhHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----IEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~----i~gV~~i~gDIt~~~t~~~ 110 (316)
.++++|=.|+ .|+....+++.+.. .+.+|+.++.++.. . -.++.++++|+++...+..
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~-----------~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 76 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAE-----------AGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAG 76 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 4578888885 67788888887742 34689999887521 0 1257788999999887655
Q ss_pred HHhhcC--CccccEEEeCCC
Q 021161 111 VIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDga 128 (316)
+.+... .+++|+|+...+
T Consensus 77 ~~~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 77 LAGQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 443221 147999998764
No 375
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=73.31 E-value=24 Score=34.04 Aligned_cols=93 Identities=15% Similarity=0.039 Sum_probs=50.3
Q ss_pred CcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-----CCCcEEEecCccChhhHHHHH
Q 021161 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 38 ~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-----i~gV~~i~gDIt~~~t~~~I~ 112 (316)
.++++.+||=.|+ |+..+.+.+.... .+.+|++++...... --|+..+- |..+.. .+.
T Consensus 180 ~~~~g~~VlV~G~--G~vG~~avq~Ak~-----------~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi-~~~~~~---~~~ 242 (360)
T PLN02586 180 MTEPGKHLGVAGL--GGLGHVAVKIGKA-----------FGLKVTVISSSSNKEDEAINRLGADSFL-VSTDPE---KMK 242 (360)
T ss_pred ccCCCCEEEEECC--CHHHHHHHHHHHH-----------CCCEEEEEeCCcchhhhHHHhCCCcEEE-cCCCHH---HHH
Confidence 3467888888776 5666554433210 135788887765321 12443221 112221 233
Q ss_pred hhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 113 ~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
+... .+|+|+- ++|. ..++..+.++|++||+++.-
T Consensus 243 ~~~~--~~D~vid-----~~g~------------~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 243 AAIG--TMDYIID-----TVSA------------VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred hhcC--CCCEEEE-----CCCC------------HHHHHHHHHHhcCCcEEEEe
Confidence 3222 4898883 3442 12356678899999999863
No 376
>PRK07577 short chain dehydrogenase; Provisional
Probab=73.20 E-value=43 Score=29.35 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=48.4
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCCCCCcEEEecCccChhhHHHHHhhc-CCccc
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHF-DGCKA 120 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~i~gV~~i~gDIt~~~t~~~I~~~~-~~~~~ 120 (316)
+++|| +..|+|+....+++.+.. .+.+|++++..+....+ ..++++|+++....+...+.+ .....
T Consensus 3 ~k~vl-ItG~s~~iG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~ 69 (234)
T PRK07577 3 SRTVL-VTGATKGIGLALSLRLAN-----------LGHQVIGIARSAIDDFP-GELFACDLADIEQTAATLAQINEIHPV 69 (234)
T ss_pred CCEEE-EECCCCcHHHHHHHHHHH-----------CCCEEEEEeCCcccccC-ceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence 34566 445677888888887741 34689988877654333 357789999987655444322 22257
Q ss_pred cEEEeCCC
Q 021161 121 DLVVCDGA 128 (316)
Q Consensus 121 DlVvsDga 128 (316)
|.|+...+
T Consensus 70 d~vi~~ag 77 (234)
T PRK07577 70 DAIVNNVG 77 (234)
T ss_pred cEEEECCC
Confidence 99998754
No 377
>PRK06114 short chain dehydrogenase; Provisional
Probab=73.19 E-value=37 Score=30.45 Aligned_cols=76 Identities=16% Similarity=0.077 Sum_probs=50.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-------C----CCcEEEecCccChhhHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------I----EGVIQVQGDITNARTAE 109 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-------i----~gV~~i~gDIt~~~t~~ 109 (316)
.+.++|=.| |.|+....+++++.. .+.+|+.++.+.... + ..+..+++|+++...+.
T Consensus 7 ~~k~~lVtG-~s~gIG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~ 74 (254)
T PRK06114 7 DGQVAFVTG-AGSGIGQRIAIGLAQ-----------AGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLR 74 (254)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH-----------CCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 356777666 667788899888742 346888888764211 1 24677899999987655
Q ss_pred HHHhhcC--CccccEEEeCCC
Q 021161 110 VVIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 110 ~I~~~~~--~~~~DlVvsDga 128 (316)
.+.+... .++.|.||.+.+
T Consensus 75 ~~~~~~~~~~g~id~li~~ag 95 (254)
T PRK06114 75 AAVARTEAELGALTLAVNAAG 95 (254)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 5443221 146899998864
No 378
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=73.00 E-value=47 Score=29.92 Aligned_cols=73 Identities=12% Similarity=0.093 Sum_probs=49.1
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------CCCCcEEEecCccChhhHHHHHhh
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~i~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
+||=.|++ |+....+++++.. .+.+|+.++.++.. ...++..++.|+++.+..+.+.+.
T Consensus 2 ~vlItGas-~gIG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~ 69 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLK-----------KGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKE 69 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHH
Confidence 56777765 6677778777641 34688888877521 123577889999998776655543
Q ss_pred c--CCccccEEEeCCC
Q 021161 115 F--DGCKADLVVCDGA 128 (316)
Q Consensus 115 ~--~~~~~DlVvsDga 128 (316)
. .-+++|+||.+.+
T Consensus 70 ~~~~~g~id~li~naG 85 (259)
T PRK08340 70 AWELLGGIDALVWNAG 85 (259)
T ss_pred HHHhcCCCCEEEECCC
Confidence 2 1247999999864
No 379
>PRK12937 short chain dehydrogenase; Provisional
Probab=72.79 E-value=29 Score=30.62 Aligned_cols=75 Identities=17% Similarity=0.122 Sum_probs=46.8
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~~~ 110 (316)
+.+||=.|+ .|+..+.+++.+.. .+.+|+.+...... .-..+.+++.|+++...+.+
T Consensus 5 ~~~vlItG~-~~~iG~~la~~l~~-----------~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 72 (245)
T PRK12937 5 NKVAIVTGA-SRGIGAAIARRLAA-----------DGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTR 72 (245)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 456777776 57788888887742 24566665433210 01347788999999876655
Q ss_pred HHhhcC--CccccEEEeCCC
Q 021161 111 VIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDga 128 (316)
..+... -++.|+|+...+
T Consensus 73 ~~~~~~~~~~~id~vi~~ag 92 (245)
T PRK12937 73 LFDAAETAFGRIDVLVNNAG 92 (245)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 443221 146899999864
No 380
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=72.68 E-value=30 Score=33.00 Aligned_cols=91 Identities=20% Similarity=0.106 Sum_probs=49.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC---C----CCCCcEEEecCccChhhHHHHH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---A----PIEGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~---~----~i~gV~~i~gDIt~~~t~~~I~ 112 (316)
+++.+||=.|+ |+..+.+.+.... .+.+|++++.... . .--|+..+ |..+....+ +
T Consensus 171 ~~g~~vlI~G~--G~vG~~a~q~ak~-----------~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~-~- 233 (355)
T cd08230 171 WNPRRALVLGA--GPIGLLAALLLRL-----------RGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAE-V- 233 (355)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH-----------cCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhh-h-
Confidence 46789998886 5555444332210 1358999987421 1 11244433 222221111 1
Q ss_pred hhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 113 ~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
. ....+|+|+- ++|-. ..+..+.++|++||++++-
T Consensus 234 ~--~~~~~d~vid-----~~g~~------------~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 234 K--LVGEFDLIIE-----ATGVP------------PLAFEALPALAPNGVVILF 268 (355)
T ss_pred h--hcCCCCEEEE-----CcCCH------------HHHHHHHHHccCCcEEEEE
Confidence 1 1246898883 44421 2356678899999998863
No 381
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=72.56 E-value=48 Score=31.37 Aligned_cols=66 Identities=14% Similarity=0.035 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-------C---------CCCcEEEecCccChhhHHHHHh
Q 021161 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------P---------IEGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 50 agPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-------~---------i~gV~~i~gDIt~~~t~~~I~~ 113 (316)
-|+|..-.++++++.. .+.+|+++|..+.. . -.+++++++|+++...+..+++
T Consensus 7 GatGfIG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~ 75 (343)
T TIGR01472 7 GITGQDGSYLAEFLLE-----------KGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIID 75 (343)
T ss_pred cCCCcHHHHHHHHHHH-----------CCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHH
Confidence 4678889999988742 24689999876421 0 1257899999999876655443
Q ss_pred hcCCccccEEEeCCCC
Q 021161 114 HFDGCKADLVVCDGAP 129 (316)
Q Consensus 114 ~~~~~~~DlVvsDgap 129 (316)
+..+|.|+.-++.
T Consensus 76 ---~~~~d~ViH~Aa~ 88 (343)
T TIGR01472 76 ---EIKPTEIYNLAAQ 88 (343)
T ss_pred ---hCCCCEEEECCcc
Confidence 3358999987764
No 382
>PRK05650 short chain dehydrogenase; Provisional
Probab=72.41 E-value=32 Score=31.23 Aligned_cols=74 Identities=9% Similarity=0.036 Sum_probs=49.0
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----------CCCCcEEEecCccChhhHHHHHh
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----------~i~gV~~i~gDIt~~~t~~~I~~ 113 (316)
+||=.| |+|++...+++.+.. .+.+|+.++..... .-..+.++++|+++......+.+
T Consensus 2 ~vlVtG-asggIG~~la~~l~~-----------~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 69 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAR-----------EGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQ 69 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 566566 577788888887741 34688888876521 01246778999999876665544
Q ss_pred hcC--CccccEEEeCCCC
Q 021161 114 HFD--GCKADLVVCDGAP 129 (316)
Q Consensus 114 ~~~--~~~~DlVvsDgap 129 (316)
... ..++|.|+.+...
T Consensus 70 ~i~~~~~~id~lI~~ag~ 87 (270)
T PRK05650 70 ACEEKWGGIDVIVNNAGV 87 (270)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 321 1469999998654
No 383
>PLN02740 Alcohol dehydrogenase-like
Probab=72.36 E-value=34 Score=33.17 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=52.9
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCC-EEEEEeCCCCC----CCCCcE-EEecCccCh--hhHHH
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMA----PIEGVI-QVQGDITNA--RTAEV 110 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~-~IvaVDl~~~~----~i~gV~-~i~gDIt~~--~t~~~ 110 (316)
++++.+||=+|+ |+..+.+.+.... .+. +|+++|.++.. .--|.. ++ |..+. ...+.
T Consensus 196 ~~~g~~VlV~G~--G~vG~~a~q~ak~-----------~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i--~~~~~~~~~~~~ 260 (381)
T PLN02740 196 VQAGSSVAIFGL--GAVGLAVAEGARA-----------RGASKIIGVDINPEKFEKGKEMGITDFI--NPKDSDKPVHER 260 (381)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------CCCCcEEEEcCChHHHHHHHHcCCcEEE--ecccccchHHHH
Confidence 467888988875 6666665443320 124 69999987642 112332 22 22221 12233
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCC-cEEEEE
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAK 166 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpG-G~fV~K 166 (316)
+.+...+ .+|+|+- ++|.. .++..+...+++| |++++-
T Consensus 261 v~~~~~~-g~dvvid-----~~G~~------------~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 261 IREMTGG-GVDYSFE-----CAGNV------------EVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred HHHHhCC-CCCEEEE-----CCCCh------------HHHHHHHHhhhcCCCEEEEE
Confidence 4433333 7999984 44421 2356677788997 998763
No 384
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=72.32 E-value=61 Score=34.07 Aligned_cols=75 Identities=19% Similarity=0.108 Sum_probs=51.0
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-------C---CCCCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-------A---PIEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-------~---~i~gV~~i~gDIt~~~t~~~I 111 (316)
+++||=.| |+|....++.+++.. .+.+.+|+++|.... . ..+++.++.+|+++...+..+
T Consensus 6 ~~~VLVTG-atGfIG~~lv~~Ll~---------~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~ 75 (668)
T PLN02260 6 PKNILITG-AAGFIASHVANRLIR---------NYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYL 75 (668)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHH---------hCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHH
Confidence 46777777 569999999888741 112468999997531 1 135789999999997655433
Q ss_pred HhhcCCccccEEEeCCCC
Q 021161 112 IRHFDGCKADLVVCDGAP 129 (316)
Q Consensus 112 ~~~~~~~~~DlVvsDgap 129 (316)
. ....+|.|+.-++.
T Consensus 76 ~---~~~~~D~ViHlAa~ 90 (668)
T PLN02260 76 L---ITEGIDTIMHFAAQ 90 (668)
T ss_pred H---hhcCCCEEEECCCc
Confidence 2 23469999976653
No 385
>PRK07063 short chain dehydrogenase; Provisional
Probab=72.09 E-value=38 Score=30.38 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=50.1
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------------CCCCcEEEecCccChhhHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTAE 109 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------------~i~gV~~i~gDIt~~~t~~ 109 (316)
+++||=.|++ |+....+++++.. .+.+|+.++.++.. .-..+.+++.|+++.....
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~-----------~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 74 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAR-----------EGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVA 74 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHH
Confidence 5678888865 6778888887742 34689888876531 0123678899999987655
Q ss_pred HHHhhcC--CccccEEEeCCC
Q 021161 110 VVIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 110 ~I~~~~~--~~~~DlVvsDga 128 (316)
.+.+.+. -+.+|.|+.+.+
T Consensus 75 ~~~~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 75 AAVAAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHHHHHHHhCCCcEEEECCC
Confidence 5443221 147999999865
No 386
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=72.07 E-value=26 Score=30.88 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=47.3
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCCC--CCcEEEecCccChhhHHHHHhhcCCcccc
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI--EGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~i--~gV~~i~gDIt~~~t~~~I~~~~~~~~~D 121 (316)
+||=.|+ +|+....+++++.. ......|++.+....... ..+.++++|+++...++.+.+.+ +..|
T Consensus 2 ~vlItGa-s~gIG~~ia~~l~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~Dls~~~~~~~~~~~~--~~id 69 (235)
T PRK09009 2 NILIVGG-SGGIGKAMVKQLLE---------RYPDATVHATYRHHKPDFQHDNVQWHALDVTDEAEIKQLSEQF--TQLD 69 (235)
T ss_pred EEEEECC-CChHHHHHHHHHHH---------hCCCCEEEEEccCCccccccCceEEEEecCCCHHHHHHHHHhc--CCCC
Confidence 5666665 45567777766631 112345666655443322 45778999999988777776665 4699
Q ss_pred EEEeCCCC
Q 021161 122 LVVCDGAP 129 (316)
Q Consensus 122 lVvsDgap 129 (316)
+|+++.+.
T Consensus 70 ~li~~aG~ 77 (235)
T PRK09009 70 WLINCVGM 77 (235)
T ss_pred EEEECCcc
Confidence 99998643
No 387
>PRK08251 short chain dehydrogenase; Provisional
Probab=71.96 E-value=71 Score=28.26 Aligned_cols=74 Identities=12% Similarity=0.054 Sum_probs=50.4
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------------CCCCcEEEecCccChhhHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------------~i~gV~~i~gDIt~~~t~~~ 110 (316)
++||=.| |+|+..+.+++++.. .+.+|+.++.++.. +-..+.++++|+++...+..
T Consensus 3 k~vlItG-as~giG~~la~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 70 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAA-----------KGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFE 70 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHH
Confidence 4677667 578899999988752 24688888876521 11247788999999876655
Q ss_pred HHhhcC--CccccEEEeCCC
Q 021161 111 VIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDga 128 (316)
+.+.+. -+..|.|+.+.+
T Consensus 71 ~~~~~~~~~~~id~vi~~ag 90 (248)
T PRK08251 71 VFAEFRDELGGLDRVIVNAG 90 (248)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 444321 246899999864
No 388
>PRK05867 short chain dehydrogenase; Provisional
Probab=71.94 E-value=24 Score=31.64 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=51.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------C-CCCcEEEecCccChhhHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~-i~gV~~i~gDIt~~~t~~~ 110 (316)
.++++|=.|+ .|+....+++++.. .+.+|+.++.++.. . -..+..+++|+++......
T Consensus 8 ~~k~vlVtGa-s~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 75 (253)
T PRK05867 8 HGKRALITGA-STGIGKRVALAYVE-----------AGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTS 75 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----------CCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 3578888886 56678888887742 34688888876531 0 1246778999999877655
Q ss_pred HHhhcC--CccccEEEeCCC
Q 021161 111 VIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDga 128 (316)
+.+.+. -+++|.|+.+.+
T Consensus 76 ~~~~~~~~~g~id~lv~~ag 95 (253)
T PRK05867 76 MLDQVTAELGGIDIAVCNAG 95 (253)
T ss_pred HHHHHHHHhCCCCEEEECCC
Confidence 443321 147999998864
No 389
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=71.92 E-value=8.2 Score=40.42 Aligned_cols=96 Identities=18% Similarity=0.100 Sum_probs=60.7
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHhhcCCc
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~~~~~~ 118 (316)
.+|+= ||-|.+.+.+++.+.. .+..++.+|.++.. .-.|...+.||.+++++++ ..+-+
T Consensus 401 ~~vII--~G~Gr~G~~va~~L~~-----------~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~----~agi~ 463 (601)
T PRK03659 401 PQVII--VGFGRFGQVIGRLLMA-----------NKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLR----AAGAE 463 (601)
T ss_pred CCEEE--ecCchHHHHHHHHHHh-----------CCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHH----hcCCc
Confidence 34544 4667788889887741 34689999998852 2357889999999987654 34456
Q ss_pred cccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 119 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 119 ~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
++|.|++-. + | ++. . ..+ ....+-+.|....+++.-.
T Consensus 464 ~A~~vv~~~-----~--d-~~~-n----~~i-~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 464 KAEAIVITC-----N--E-PED-T----MKI-VELCQQHFPHLHILARARG 500 (601)
T ss_pred cCCEEEEEe-----C--C-HHH-H----HHH-HHHHHHHCCCCeEEEEeCC
Confidence 899998742 1 1 111 1 111 1224456778788876543
No 390
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=71.87 E-value=16 Score=34.81 Aligned_cols=89 Identities=8% Similarity=0.100 Sum_probs=49.8
Q ss_pred CCCCeEEEECCCCCHHH-HHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHhh
Q 021161 40 EGVKRVVDLCAAPGSWS-QVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wS-q~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
+++.+||=+|||+=|.. ..+++++. ...+|+++|.++.. ...+.... + + .+.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~------------g~~~vi~~~~~~~k~~~a~~~~~~~~---~-~-----~~~-- 218 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIY------------PESKLVVFGKHQEKLDLFSFADETYL---I-D-----DIP-- 218 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhc------------CCCcEEEEeCcHhHHHHHhhcCceee---h-h-----hhh--
Confidence 67899999998654433 23344431 13579999987632 11121110 0 0 011
Q ss_pred cCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 115 ~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
....+|+|+ |++|-... ..++..+.++|++||++++-
T Consensus 219 -~~~g~d~vi-----D~~G~~~~---------~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 219 -EDLAVDHAF-----ECVGGRGS---------QSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred -hccCCcEEE-----ECCCCCcc---------HHHHHHHHHhCcCCcEEEEE
Confidence 112488888 34442111 13467788999999999864
No 391
>PRK12829 short chain dehydrogenase; Provisional
Probab=71.71 E-value=19 Score=32.30 Aligned_cols=77 Identities=14% Similarity=0.081 Sum_probs=52.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCC--CcEEEecCccChhhHHHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIE--GVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~--gV~~i~gDIt~~~t~~~I~ 112 (316)
++.++|=.|+. |+....+++++.. .+.+|+.++..+-. ..+ .+.++.+|++++..+..+.
T Consensus 10 ~~~~vlItGa~-g~iG~~~a~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (264)
T PRK12829 10 DGLRVLVTGGA-SGIGRAIAEAFAE-----------AGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVF 77 (264)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHH
Confidence 45789988875 8888888888742 24688899876521 122 3578899999988765544
Q ss_pred hhcC--CccccEEEeCCCC
Q 021161 113 RHFD--GCKADLVVCDGAP 129 (316)
Q Consensus 113 ~~~~--~~~~DlVvsDgap 129 (316)
+... -.++|.|+...+.
T Consensus 78 ~~~~~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 78 DTAVERFGGLDVLVNNAGI 96 (264)
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 3321 1369999988653
No 392
>PRK08628 short chain dehydrogenase; Provisional
Probab=71.70 E-value=37 Score=30.41 Aligned_cols=75 Identities=15% Similarity=0.027 Sum_probs=48.5
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC---------CCCcEEEecCccChhhHHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IEGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~---------i~gV~~i~gDIt~~~t~~~I~ 112 (316)
+.++|=.|+ .|++...+++.+.. .+.+|+.++..+-.. -.++..++.|+++......++
T Consensus 7 ~~~ilItGa-sggiG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (258)
T PRK08628 7 DKVVIVTGG-ASGIGAAISLRLAE-----------EGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAV 74 (258)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHH-----------cCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 456777775 57788888887742 245677776655321 125778899999987665544
Q ss_pred hhcC--CccccEEEeCCC
Q 021161 113 RHFD--GCKADLVVCDGA 128 (316)
Q Consensus 113 ~~~~--~~~~DlVvsDga 128 (316)
+... .+.+|.|+...+
T Consensus 75 ~~~~~~~~~id~vi~~ag 92 (258)
T PRK08628 75 EQTVAKFGRIDGLVNNAG 92 (258)
T ss_pred HHHHHhcCCCCEEEECCc
Confidence 3221 147899998864
No 393
>PLN02572 UDP-sulfoquinovose synthase
Probab=71.68 E-value=46 Score=33.32 Aligned_cols=73 Identities=18% Similarity=0.110 Sum_probs=49.1
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-C-----------C---------------CCC
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-A-----------P---------------IEG 94 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-~-----------~---------------i~g 94 (316)
+++||=. -|+|..-.+|++++.. .+..|+++|.... . + -.+
T Consensus 47 ~k~VLVT-GatGfIGs~Lv~~L~~-----------~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (442)
T PLN02572 47 KKKVMVI-GGDGYCGWATALHLSK-----------RGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKE 114 (442)
T ss_pred CCEEEEE-CCCcHHHHHHHHHHHH-----------CCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCc
Confidence 4677655 4788899999988842 2468898883211 0 0 025
Q ss_pred cEEEecCccChhhHHHHHhhcCCccccEEEeCCCC
Q 021161 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (316)
Q Consensus 95 V~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDgap 129 (316)
+.++.+|+++...+..+++ +..+|.|+.-++.
T Consensus 115 v~~v~~Dl~d~~~v~~~l~---~~~~D~ViHlAa~ 146 (442)
T PLN02572 115 IELYVGDICDFEFLSEAFK---SFEPDAVVHFGEQ 146 (442)
T ss_pred ceEEECCCCCHHHHHHHHH---hCCCCEEEECCCc
Confidence 7899999999876655443 2368999997643
No 394
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=71.64 E-value=25 Score=36.33 Aligned_cols=136 Identities=18% Similarity=0.239 Sum_probs=77.0
Q ss_pred CCCcHHHHHHHHhCCchhhhhhHHhhhHHcCC-c---------CCCCeEEEECCCCCHHHHHH-HHHhCCCCCCCCCCCC
Q 021161 7 DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNI-F---------EGVKRVVDLCAAPGSWSQVL-SRKLYLPAKLSPDSRE 75 (316)
Q Consensus 7 ~~rd~yyr~ak~~g~raRsa~KL~qId~~f~~-~---------~~~~rVLDLcagPG~wSq~L-a~~l~~~~~~~~~~~~ 75 (316)
++-|.+...+.-.|||+ .++--..|.- + .++.+|+=+|+|+=|..... ++.++
T Consensus 124 q~~d~lssma~iAGy~A-----vi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~lG----------- 187 (511)
T TIGR00561 124 QKLDALSSMANIAGYRA-----IIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSLG----------- 187 (511)
T ss_pred CccCcchhhHHHHHHHH-----HHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHCC-----------
Confidence 66799999999999996 3333333332 1 24579999999987766554 44443
Q ss_pred CCCCEEEEEeCCCCC----CCCCcEEEecCcc-------------ChhhHHHHHhhcC--CccccEEEeCCCCCCCCCCC
Q 021161 76 GDLPLIVAIDLQPMA----PIEGVIQVQGDIT-------------NARTAEVVIRHFD--GCKADLVVCDGAPDVTGLHD 136 (316)
Q Consensus 76 ~~~~~IvaVDl~~~~----~i~gV~~i~gDIt-------------~~~t~~~I~~~~~--~~~~DlVvsDgapdvtG~~~ 136 (316)
+.|+++|..+.. ..-|.+++.-|.. +.+..+...+.+. ...+|+|++-... .|...
T Consensus 188 ---A~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~Tali--pG~~a 262 (511)
T TIGR00561 188 ---AIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALI--PGKPA 262 (511)
T ss_pred ---CEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECccc--CCCCC
Confidence 578899988742 1124444443321 1122221122222 2469999976421 22211
Q ss_pred ccHHHHHHHHHHHHHHHHHcccCCcEEE-EEEccCCC
Q 021161 137 MDEFVQSQLILAGLTVVTHVLKEGGKFI-AKIFRGKD 172 (316)
Q Consensus 137 ~de~~~~~L~~aaL~~a~~vLkpGG~fV-~Kif~~~~ 172 (316)
. .| ..+...+.+|||+.+| +.+-.|.+
T Consensus 263 P------~L---it~emv~~MKpGsvIVDlA~d~GGn 290 (511)
T TIGR00561 263 P------KL---ITEEMVDSMKAGSVIVDLAAEQGGN 290 (511)
T ss_pred C------ee---ehHHHHhhCCCCCEEEEeeeCCCCC
Confidence 0 01 1244578999999887 43434443
No 395
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=71.40 E-value=25 Score=31.28 Aligned_cols=76 Identities=12% Similarity=0.059 Sum_probs=50.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-------C-CCcEEEecCccChhhHHHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------I-EGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-------i-~gV~~i~gDIt~~~t~~~I~ 112 (316)
.+++||=.|++ |+..+.+++.+.. .+.+|+.++..+... . ..+.+++.|+++...+..+.
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~-----------~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (248)
T TIGR01832 4 EGKVALVTGAN-TGLGQGIAVGLAE-----------AGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALV 71 (248)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence 35678877774 6788888888742 346899888764211 1 24678899999987765544
Q ss_pred hhcC--CccccEEEeCCC
Q 021161 113 RHFD--GCKADLVVCDGA 128 (316)
Q Consensus 113 ~~~~--~~~~DlVvsDga 128 (316)
+... ....|.||...+
T Consensus 72 ~~~~~~~~~~d~li~~ag 89 (248)
T TIGR01832 72 DSAVEEFGHIDILVNNAG 89 (248)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 3221 146999998854
No 396
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=71.40 E-value=50 Score=29.70 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=50.1
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-CCCcEEEecCccChhhHHHHHhhcC--Cc
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-IEGVIQVQGDITNARTAEVVIRHFD--GC 118 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-i~gV~~i~gDIt~~~t~~~I~~~~~--~~ 118 (316)
+++||=.| |.|+....+++++.. .+.+|+.+|..+... ..++..++.|+++...++.+.+... -+
T Consensus 9 ~k~vlItG-~s~gIG~~la~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 76 (266)
T PRK06171 9 GKIIIVTG-GSSGIGLAIVKELLA-----------NGANVVNADIHGGDGQHENYQFVPTDVSSAEEVNHTVAEIIEKFG 76 (266)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHH-----------CCCEEEEEeCCccccccCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45677666 556677777777641 357898888876432 2357788999999876655443321 14
Q ss_pred cccEEEeCCC
Q 021161 119 KADLVVCDGA 128 (316)
Q Consensus 119 ~~DlVvsDga 128 (316)
++|.|+...+
T Consensus 77 ~id~li~~Ag 86 (266)
T PRK06171 77 RIDGLVNNAG 86 (266)
T ss_pred CCCEEEECCc
Confidence 7999999864
No 397
>PRK08278 short chain dehydrogenase; Provisional
Probab=70.86 E-value=63 Score=29.49 Aligned_cols=75 Identities=13% Similarity=0.066 Sum_probs=49.2
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-------------C----CCcEEEecCccC
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------------I----EGVIQVQGDITN 104 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-------------i----~gV~~i~gDIt~ 104 (316)
+.++|=.|+ .|+....+++.+.. .+.+|+.++...... + ..+..+++|+++
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~ 73 (273)
T PRK08278 6 GKTLFITGA-SRGIGLAIALRAAR-----------DGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRD 73 (273)
T ss_pred CCEEEEECC-CchHHHHHHHHHHH-----------CCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCC
Confidence 457776665 67788888887742 346888888765310 0 236678899999
Q ss_pred hhhHHHHHhhcC--CccccEEEeCCC
Q 021161 105 ARTAEVVIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 105 ~~t~~~I~~~~~--~~~~DlVvsDga 128 (316)
...+..+.+... -+++|+|+.+.+
T Consensus 74 ~~~i~~~~~~~~~~~g~id~li~~ag 99 (273)
T PRK08278 74 EDQVAAAVAKAVERFGGIDICVNNAS 99 (273)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 876655443221 136999999864
No 398
>PRK06500 short chain dehydrogenase; Provisional
Probab=70.70 E-value=20 Score=31.83 Aligned_cols=75 Identities=9% Similarity=0.129 Sum_probs=47.5
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC-CCcEEEecCccChhhHHHHHhh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i-~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
+.+||=.|+ .|+....+++++.. .+.+|+.++.++.. .+ ..+..+++|+++......+.+.
T Consensus 6 ~k~vlItGa-sg~iG~~la~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (249)
T PRK06500 6 GKTALITGG-TSGIGLETARQFLA-----------EGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQA 73 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHH
Confidence 345555554 57788888877742 24688888876421 11 2467788999998765544433
Q ss_pred cC--CccccEEEeCCC
Q 021161 115 FD--GCKADLVVCDGA 128 (316)
Q Consensus 115 ~~--~~~~DlVvsDga 128 (316)
+. .+++|.|+...+
T Consensus 74 ~~~~~~~id~vi~~ag 89 (249)
T PRK06500 74 LAEAFGRLDAVFINAG 89 (249)
T ss_pred HHHHhCCCCEEEECCC
Confidence 21 146999998764
No 399
>PRK07904 short chain dehydrogenase; Provisional
Probab=70.70 E-value=25 Score=31.93 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=50.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-------CC-----CCcEEEecCccChhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PI-----EGVIQVQGDITNART 107 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-------~i-----~gV~~i~gDIt~~~t 107 (316)
.++++||=.|| .|+....+++++.. ..+.+|+.++.++-. .+ .+++++++|+++...
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~----------~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~ 74 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLK----------NAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDS 74 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHh----------cCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHH
Confidence 35677888887 67888888887631 013588888876532 01 257889999999876
Q ss_pred HHHHHhh-cCCccccEEEeCC
Q 021161 108 AEVVIRH-FDGCKADLVVCDG 127 (316)
Q Consensus 108 ~~~I~~~-~~~~~~DlVvsDg 127 (316)
...+.+. ...+..|+++++.
T Consensus 75 ~~~~~~~~~~~g~id~li~~a 95 (253)
T PRK07904 75 HPKVIDAAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHHHHHHHhcCCCCEEEEee
Confidence 5443332 2224799888764
No 400
>PRK07825 short chain dehydrogenase; Provisional
Probab=70.53 E-value=55 Score=29.63 Aligned_cols=75 Identities=15% Similarity=0.035 Sum_probs=50.4
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCCCcEEEecCccChhhHHHHHhhc
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHF 115 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~gV~~i~gDIt~~~t~~~I~~~~ 115 (316)
++++|=.|+ +|+....+++++.. .+.+|+.++.++.. .+..+..+++|+++.+....+.+.+
T Consensus 5 ~~~ilVtGa-sggiG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (273)
T PRK07825 5 GKVVAITGG-ARGIGLATARALAA-----------LGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAV 72 (273)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHH
Confidence 456776665 57788888887742 24678888876521 1235778899999988765544432
Q ss_pred C--CccccEEEeCCC
Q 021161 116 D--GCKADLVVCDGA 128 (316)
Q Consensus 116 ~--~~~~DlVvsDga 128 (316)
. .+..|+||++..
T Consensus 73 ~~~~~~id~li~~ag 87 (273)
T PRK07825 73 EADLGPIDVLVNNAG 87 (273)
T ss_pred HHHcCCCCEEEECCC
Confidence 1 146999999864
No 401
>PRK07060 short chain dehydrogenase; Provisional
Probab=70.38 E-value=33 Score=30.24 Aligned_cols=75 Identities=15% Similarity=0.011 Sum_probs=50.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----CCCCcEEEecCccChhhHHHHHhhc
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRHF 115 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----~i~gV~~i~gDIt~~~t~~~I~~~~ 115 (316)
.++++|=.| |.|+....+++.+.. .+.+|+.++.++.. ...++.++++|+++...+..+.+..
T Consensus 8 ~~~~~lItG-a~g~iG~~~a~~l~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 75 (245)
T PRK07060 8 SGKSVLVTG-ASSGIGRACAVALAQ-----------RGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAA 75 (245)
T ss_pred CCCEEEEeC-CcchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHh
Confidence 346777555 457788888887741 24688888876521 1125678899999987666655543
Q ss_pred CCccccEEEeCCCC
Q 021161 116 DGCKADLVVCDGAP 129 (316)
Q Consensus 116 ~~~~~DlVvsDgap 129 (316)
.++|.|++..+.
T Consensus 76 --~~~d~vi~~ag~ 87 (245)
T PRK07060 76 --GAFDGLVNCAGI 87 (245)
T ss_pred --CCCCEEEECCCC
Confidence 479999998643
No 402
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=70.36 E-value=35 Score=30.40 Aligned_cols=76 Identities=18% Similarity=0.112 Sum_probs=50.1
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------C----CCCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----IEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~----i~gV~~i~gDIt~~~t~~~I 111 (316)
+.++|=. .|+|+....+++++.. .+..|+.++..+.. . -..+.++++|+++...+..+
T Consensus 7 ~~~vlIt-Gasg~iG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (262)
T PRK13394 7 GKTAVVT-GAASGIGKEIALELAR-----------AGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAG 74 (262)
T ss_pred CCEEEEE-CCCChHHHHHHHHHHH-----------CCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHH
Confidence 4567744 4667888888888742 34688888887731 0 12367789999998876654
Q ss_pred HhhcC--CccccEEEeCCCC
Q 021161 112 IRHFD--GCKADLVVCDGAP 129 (316)
Q Consensus 112 ~~~~~--~~~~DlVvsDgap 129 (316)
.+... .+++|.|++..+.
T Consensus 75 ~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 75 IDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHHcCCCCEEEECCcc
Confidence 43221 1468999987643
No 403
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=70.05 E-value=46 Score=30.72 Aligned_cols=63 Identities=14% Similarity=0.087 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC--C--CCcEEEecCccChhhHHHHHhhcCCccccEEEe
Q 021161 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125 (316)
Q Consensus 50 agPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~--i--~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvs 125 (316)
.|+|....++++.+.. .+.+|++++..+... + .++..+++|+++...+..+ +. .+|.|+.
T Consensus 7 G~~G~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~---~~--~~d~vi~ 70 (328)
T TIGR03466 7 GATGFVGSAVVRLLLE-----------QGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKA---VA--GCRALFH 70 (328)
T ss_pred CCccchhHHHHHHHHH-----------CCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHH---Hh--CCCEEEE
Confidence 4678888888888742 246899999875431 2 2688999999998655443 32 4798887
Q ss_pred CCC
Q 021161 126 DGA 128 (316)
Q Consensus 126 Dga 128 (316)
..+
T Consensus 71 ~a~ 73 (328)
T TIGR03466 71 VAA 73 (328)
T ss_pred ece
Confidence 654
No 404
>PRK09135 pteridine reductase; Provisional
Probab=69.79 E-value=31 Score=30.36 Aligned_cols=75 Identities=11% Similarity=0.018 Sum_probs=51.4
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC------------CCCcEEEecCccChhhHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------IEGVIQVQGDITNARTAE 109 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~------------i~gV~~i~gDIt~~~t~~ 109 (316)
+.+||=.|+ .|+....+++++.. .+.+|++++...... -..+.++++|+++.+.+.
T Consensus 6 ~~~vlItGa-~g~iG~~l~~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 73 (249)
T PRK09135 6 AKVALITGG-ARRIGAAIARTLHA-----------AGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALP 73 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHH
Confidence 467888885 68889999888742 357899998754211 124778899999987665
Q ss_pred HHHhhcC--CccccEEEeCCC
Q 021161 110 VVIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 110 ~I~~~~~--~~~~DlVvsDga 128 (316)
.+.+... ...+|.|+...+
T Consensus 74 ~~~~~~~~~~~~~d~vi~~ag 94 (249)
T PRK09135 74 ELVAACVAAFGRLDALVNNAS 94 (249)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 5443221 136899998865
No 405
>PRK06181 short chain dehydrogenase; Provisional
Probab=69.77 E-value=67 Score=28.76 Aligned_cols=74 Identities=18% Similarity=0.102 Sum_probs=48.9
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------C-CCCcEEEecCccChhhHHHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~-i~gV~~i~gDIt~~~t~~~I~ 112 (316)
.+||=.| |+|+....+++.+.. .+.+|++++.++.. . -.++.++.+|+++......++
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~-----------~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 69 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLAR-----------AGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLI 69 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 3566455 677888888887742 24689999877521 0 124778899999987665544
Q ss_pred hhcC--CccccEEEeCCC
Q 021161 113 RHFD--GCKADLVVCDGA 128 (316)
Q Consensus 113 ~~~~--~~~~DlVvsDga 128 (316)
+... ....|.|+...+
T Consensus 70 ~~~~~~~~~id~vi~~ag 87 (263)
T PRK06181 70 EAAVARFGGIDILVNNAG 87 (263)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 4321 136899998864
No 406
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=69.64 E-value=20 Score=34.78 Aligned_cols=87 Identities=18% Similarity=0.051 Sum_probs=60.0
Q ss_pred hhhhHHhhhHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCCC----CCcEEEec
Q 021161 25 SAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI----EGVIQVQG 100 (316)
Q Consensus 25 sa~KL~qId~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~i----~gV~~i~g 100 (316)
.+|.|.++-.+--+...+++||=+| |+|-....+++.+.. .+..|+++|...-... .++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~IlVtG-gtGfIG~~l~~~L~~-----------~G~~V~~v~r~~~~~~~~~~~~~~~~~~ 71 (370)
T PLN02695 4 GAYTLAELEREPYWPSEKLRICITG-AGGFIASHIARRLKA-----------EGHYIIASDWKKNEHMSEDMFCHEFHLV 71 (370)
T ss_pred cccchhhcCCCCCCCCCCCEEEEEC-CccHHHHHHHHHHHh-----------CCCEEEEEEeccccccccccccceEEEC
Confidence 3677877766666777889999554 789899999988842 2458999986532111 13677889
Q ss_pred CccChhhHHHHHhhcCCccccEEEeCCC
Q 021161 101 DITNARTAEVVIRHFDGCKADLVVCDGA 128 (316)
Q Consensus 101 DIt~~~t~~~I~~~~~~~~~DlVvsDga 128 (316)
|+++...+..+ + ..+|.|+.=++
T Consensus 72 Dl~d~~~~~~~---~--~~~D~Vih~Aa 94 (370)
T PLN02695 72 DLRVMENCLKV---T--KGVDHVFNLAA 94 (370)
T ss_pred CCCCHHHHHHH---H--hCCCEEEEccc
Confidence 99987654333 2 25899887654
No 407
>PRK06197 short chain dehydrogenase; Provisional
Probab=69.60 E-value=60 Score=30.18 Aligned_cols=76 Identities=13% Similarity=0.009 Sum_probs=50.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------------CCCCcEEEecCccChhhH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTA 108 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------------~i~gV~~i~gDIt~~~t~ 108 (316)
.+++||=.| |.|+....+++.+.. .+.+|+.++..+.. +-..+.++++|+++...+
T Consensus 15 ~~k~vlItG-as~gIG~~~a~~l~~-----------~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v 82 (306)
T PRK06197 15 SGRVAVVTG-ANTGLGYETAAALAA-----------KGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASV 82 (306)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHH
Confidence 456777666 467888888887742 24678887765421 012467889999998876
Q ss_pred HHHHhhcC--CccccEEEeCCC
Q 021161 109 EVVIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 109 ~~I~~~~~--~~~~DlVvsDga 128 (316)
+.+.+.+. .+++|+||.+.+
T Consensus 83 ~~~~~~~~~~~~~iD~li~nAg 104 (306)
T PRK06197 83 RAAADALRAAYPRIDLLINNAG 104 (306)
T ss_pred HHHHHHHHhhCCCCCEEEECCc
Confidence 65554331 146999999865
No 408
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=69.47 E-value=22 Score=32.15 Aligned_cols=102 Identities=20% Similarity=0.172 Sum_probs=59.0
Q ss_pred EEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC--C---------C-CCCcEEEecCccChhhHHHHH
Q 021161 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--A---------P-IEGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 45 VLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~--~---------~-i~gV~~i~gDIt~~~t~~~I~ 112 (316)
|.|+||=-|-...+|.++.. ..+++|+|+.+- . . ...+.+..||=...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-------------~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~------- 60 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-------------APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV------- 60 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-------------EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-------
T ss_pred CceeccchhHHHHHHHhcCC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-------
Confidence 68999999999999998753 358999999983 1 1 23477778875432
Q ss_pred hhcCC-ccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhc
Q 021161 113 RHFDG-CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 183 (316)
Q Consensus 113 ~~~~~-~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~ 183 (316)
+.. +.+|.|+--|+ -..++...|......++..-.||+.- -.+...|...|...
T Consensus 61 --l~~~e~~d~ivIAGM-------------GG~lI~~ILe~~~~~~~~~~~lILqP--~~~~~~LR~~L~~~ 115 (205)
T PF04816_consen 61 --LKPGEDVDTIVIAGM-------------GGELIIEILEAGPEKLSSAKRLILQP--NTHAYELRRWLYEN 115 (205)
T ss_dssp ----GGG---EEEEEEE--------------HHHHHHHHHHTGGGGTT--EEEEEE--SS-HHHHHHHHHHT
T ss_pred --cCCCCCCCEEEEecC-------------CHHHHHHHHHhhHHHhccCCeEEEeC--CCChHHHHHHHHHC
Confidence 222 33777775441 12345566666677777777888742 23455555555443
No 409
>PLN02827 Alcohol dehydrogenase-like
Probab=69.34 E-value=33 Score=33.31 Aligned_cols=95 Identities=19% Similarity=0.188 Sum_probs=52.7
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCC-EEEEEeCCCCC----CCCCcEEEecCccC--hhhHHHH
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMA----PIEGVIQVQGDITN--ARTAEVV 111 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~-~IvaVDl~~~~----~i~gV~~i~gDIt~--~~t~~~I 111 (316)
++++.+||=.|+ |+..+.+.+.... .+. .|+++|.++.. .--|+..+ -|..+ ....+.+
T Consensus 191 ~~~g~~VlV~G~--G~vG~~~iqlak~-----------~G~~~vi~~~~~~~~~~~a~~lGa~~~-i~~~~~~~~~~~~v 256 (378)
T PLN02827 191 VSKGSSVVIFGL--GTVGLSVAQGAKL-----------RGASQIIGVDINPEKAEKAKTFGVTDF-INPNDLSEPIQQVI 256 (378)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCeEEEECCCHHHHHHHHHcCCcEE-EcccccchHHHHHH
Confidence 467889998875 6677665443310 123 58888876532 11244221 12221 1223334
Q ss_pred HhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCC-cEEEE
Q 021161 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIA 165 (316)
Q Consensus 112 ~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpG-G~fV~ 165 (316)
.+...+ .+|+|+- ++|.. ..+..+..+|++| |++|+
T Consensus 257 ~~~~~~-g~d~vid-----~~G~~------------~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 257 KRMTGG-GADYSFE-----CVGDT------------GIATTALQSCSDGWGLTVT 293 (378)
T ss_pred HHHhCC-CCCEEEE-----CCCCh------------HHHHHHHHhhccCCCEEEE
Confidence 433333 6999983 44421 2356678889999 99986
No 410
>PRK07024 short chain dehydrogenase; Provisional
Probab=69.02 E-value=64 Score=28.98 Aligned_cols=75 Identities=16% Similarity=0.137 Sum_probs=49.7
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC---CCcEEEecCccChhhHHHHHh
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i---~gV~~i~gDIt~~~t~~~I~~ 113 (316)
++||=.|+ +|+....+++++.. .+.+|+.+|.++.. .+ ..+.++++|+++...+.+..+
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~ 70 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYAR-----------QGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAA 70 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHH
Confidence 45665664 77888999888742 24688888876421 11 157889999999876655443
Q ss_pred hc--CCccccEEEeCCCC
Q 021161 114 HF--DGCKADLVVCDGAP 129 (316)
Q Consensus 114 ~~--~~~~~DlVvsDgap 129 (316)
.+ ..+.+|+|+.+.+.
T Consensus 71 ~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 71 DFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHhCCCCCEEEECCCc
Confidence 22 11468999998653
No 411
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=68.98 E-value=22 Score=32.15 Aligned_cols=62 Identities=19% Similarity=0.128 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC--CCCCCcEEEecCccChhhHHHHHhhcCCccccEEEeCC
Q 021161 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--APIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127 (316)
Q Consensus 50 agPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~--~~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDg 127 (316)
||+|---..+++.... .+..|+||=.++- ...++++.++.||.++..+... + ..+|+||+--
T Consensus 7 gAsG~~Gs~i~~EA~~-----------RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~---l--~g~DaVIsA~ 70 (211)
T COG2910 7 GASGKAGSRILKEALK-----------RGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASD---L--AGHDAVISAF 70 (211)
T ss_pred ecCchhHHHHHHHHHh-----------CCCeeEEEEeChHhccccccceeecccccChhhhHhh---h--cCCceEEEec
Confidence 5677766666655321 2457888887773 3358999999999998754433 2 3699999864
No 412
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=68.92 E-value=12 Score=38.67 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHhhcCCccccEEEe
Q 021161 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125 (316)
Q Consensus 50 agPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlVvs 125 (316)
||-|.+.+.+++.+.. .+..++.+|.++.. .-.|+..+.||.++++++++ .+-+++|.|++
T Consensus 423 ~G~G~~G~~la~~L~~-----------~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~----a~i~~a~~viv 487 (558)
T PRK10669 423 VGYGRVGSLLGEKLLA-----------AGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQL----AHLDCARWLLL 487 (558)
T ss_pred ECCChHHHHHHHHHHH-----------CCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHh----cCccccCEEEE
Confidence 5667788999998742 24579999988742 13588899999999876543 34468997775
Q ss_pred C
Q 021161 126 D 126 (316)
Q Consensus 126 D 126 (316)
.
T Consensus 488 ~ 488 (558)
T PRK10669 488 T 488 (558)
T ss_pred E
Confidence 3
No 413
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=68.80 E-value=35 Score=31.91 Aligned_cols=94 Identities=20% Similarity=0.257 Sum_probs=51.5
Q ss_pred cCCCCeEEEECCCCCHHHHHH---HHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC----CCCcEEEecCccChhhHHHH
Q 021161 39 FEGVKRVVDLCAAPGSWSQVL---SRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~L---a~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~----i~gV~~i~gDIt~~~t~~~I 111 (316)
++++.+||-.|+ |+..+.+ ++.++ ..+|++++..+... --|+..+ -+..+......+
T Consensus 165 ~~~~~~VlI~g~--g~vg~~~iqlak~~g-------------~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~i 228 (347)
T cd05278 165 IKPGSTVAVIGA--GPVGLCAVAGARLLG-------------AARIIAVDSNPERLDLAKEAGATDI-INPKNGDIVEQI 228 (347)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcC-------------CCEEEEEeCCHHHHHHHHHhCCcEE-EcCCcchHHHHH
Confidence 457889999754 5555554 44332 13788887655321 1122111 122222233445
Q ss_pred HhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 112 ~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
.....+..+|+|+.- .|-. ..+..+.+.|+++|+|+.
T Consensus 229 ~~~~~~~~~d~vld~-----~g~~------------~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 229 LELTGGRGVDCVIEA-----VGFE------------ETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred HHHcCCCCCcEEEEc-----cCCH------------HHHHHHHHHhhcCCEEEE
Confidence 444555679999842 2210 235667889999999985
No 414
>PLN00198 anthocyanidin reductase; Provisional
Probab=68.61 E-value=1.1e+02 Score=28.90 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=46.5
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------C---CCCcEEEecCccChhhHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---IEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~---i~gV~~i~gDIt~~~t~~~ 110 (316)
+++||=.| |+|..-.+|++.+-. .+.+|+++...+.. . ..++.++++|+++......
T Consensus 9 ~~~vlItG-~~GfIG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 76 (338)
T PLN00198 9 KKTACVIG-GTGFLASLLIKLLLQ-----------KGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEA 76 (338)
T ss_pred CCeEEEEC-CchHHHHHHHHHHHH-----------CCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHH
Confidence 45676666 458888899888741 23577776655321 1 1257889999999875544
Q ss_pred HHhhcCCccccEEEeCCCC
Q 021161 111 VIRHFDGCKADLVVCDGAP 129 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgap 129 (316)
++ . .+|.|+.-+++
T Consensus 77 ~~---~--~~d~vih~A~~ 90 (338)
T PLN00198 77 PI---A--GCDLVFHVATP 90 (338)
T ss_pred HH---h--cCCEEEEeCCC
Confidence 33 2 48999987664
No 415
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.52 E-value=32 Score=32.28 Aligned_cols=76 Identities=22% Similarity=0.158 Sum_probs=49.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-------C----CCcEEEecCccChhhHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------I----EGVIQVQGDITNARTAE 109 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-------i----~gV~~i~gDIt~~~t~~ 109 (316)
.++++|=.|++ |+.-..+++.+.. .+.+|+.+|...... + ..+..+++|+++.+.+.
T Consensus 11 ~~k~~lVTGas-~gIG~~ia~~L~~-----------~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~ 78 (306)
T PRK07792 11 SGKVAVVTGAA-AGLGRAEALGLAR-----------LGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATAD 78 (306)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHH-----------CCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence 35677766655 6677777777641 346888888754211 1 24678899999987766
Q ss_pred HHHhhc-CCccccEEEeCCC
Q 021161 110 VVIRHF-DGCKADLVVCDGA 128 (316)
Q Consensus 110 ~I~~~~-~~~~~DlVvsDga 128 (316)
.+.+.. ..+++|+||.+.+
T Consensus 79 ~~~~~~~~~g~iD~li~nAG 98 (306)
T PRK07792 79 ELVATAVGLGGLDIVVNNAG 98 (306)
T ss_pred HHHHHHHHhCCCCEEEECCC
Confidence 655431 1247999999864
No 416
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=68.43 E-value=48 Score=29.39 Aligned_cols=76 Identities=16% Similarity=0.070 Sum_probs=49.2
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCC-CCC------C----CCCcEEEecCccChhhHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ-PMA------P----IEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~-~~~------~----i~gV~~i~gDIt~~~t~~~ 110 (316)
+.++|=.| |.|++...+++++.. .+..|+.+.-. +.. . -..+.+++.|+++...+..
T Consensus 6 ~~~~lItG-~s~~iG~~la~~l~~-----------~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 73 (247)
T PRK12935 6 GKVAIVTG-GAKGIGKAITVALAQ-----------EGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANR 73 (247)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHH-----------cCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 56888899 578899999988742 24566654332 210 0 1247788999999876655
Q ss_pred HHhhcC--CccccEEEeCCCC
Q 021161 111 VIRHFD--GCKADLVVCDGAP 129 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDgap 129 (316)
..+... -++.|.|+...+.
T Consensus 74 ~~~~~~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 74 LVEEAVNHFGKVDILVNNAGI 94 (247)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 444321 1468999988653
No 417
>PRK10537 voltage-gated potassium channel; Provisional
Probab=68.36 E-value=20 Score=35.65 Aligned_cols=97 Identities=9% Similarity=-0.007 Sum_probs=59.4
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--CCCCcEEEecCccChhhHHHHHhhcCCccc
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITNARTAEVVIRHFDGCKA 120 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~ 120 (316)
.+|+=+ |-|...+.+.+.+.. .+..++.+|..... ...|+.++.||.++.+++++ .+-+.+
T Consensus 241 ~HvII~--G~g~lg~~v~~~L~~-----------~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~----AgI~~A 303 (393)
T PRK10537 241 DHFIIC--GHSPLAINTYLGLRQ-----------RGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKK----AGAARA 303 (393)
T ss_pred CeEEEE--CCChHHHHHHHHHHH-----------CCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHh----cCcccC
Confidence 456655 455677778777641 13456677754322 23578899999999876543 344678
Q ss_pred cEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC
Q 021161 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (316)
Q Consensus 121 DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~ 170 (316)
+.|++-.. .|+.. .....+.+-+.|....++.+-..
T Consensus 304 ~aVI~~t~--------dD~~N------l~ivL~ar~l~p~~kIIa~v~~~ 339 (393)
T PRK10537 304 RAILALRD--------NDADN------AFVVLAAKEMSSDVKTVAAVNDS 339 (393)
T ss_pred CEEEEcCC--------ChHHH------HHHHHHHHHhCCCCcEEEEECCH
Confidence 88887431 12211 11234567788999999876543
No 418
>PRK07890 short chain dehydrogenase; Provisional
Probab=68.28 E-value=44 Score=29.77 Aligned_cols=76 Identities=14% Similarity=0.002 Sum_probs=51.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------C----CCCcEEEecCccChhhHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----IEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~----i~gV~~i~gDIt~~~t~~~ 110 (316)
.+++||=.|+ +|+....+++.+.. .+.+|+.++.++.. . -..+..++.|+++.+.++.
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAAR-----------AGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCAN 71 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHH
Confidence 4567887775 66788888887742 34689999887631 0 1246789999999876654
Q ss_pred HHhhc--CCccccEEEeCCC
Q 021161 111 VIRHF--DGCKADLVVCDGA 128 (316)
Q Consensus 111 I~~~~--~~~~~DlVvsDga 128 (316)
+.+.. .-+.+|.|+....
T Consensus 72 ~~~~~~~~~g~~d~vi~~ag 91 (258)
T PRK07890 72 LVALALERFGRVDALVNNAF 91 (258)
T ss_pred HHHHHHHHcCCccEEEECCc
Confidence 44321 1146899999864
No 419
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.22 E-value=83 Score=27.56 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=48.2
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCCC-CCcEEEecCccChhhHHHHHhhcCCccc
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI-EGVIQVQGDITNARTAEVVIRHFDGCKA 120 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~i-~gV~~i~gDIt~~~t~~~I~~~~~~~~~ 120 (316)
++++|=.|+ .|+....+++++.. .+.+|+.++..+.... .++..+..|+++. ..++.+.+ +++
T Consensus 5 ~k~~lVtGa-s~~iG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~--~~~~~~~~--~~i 68 (235)
T PRK06550 5 TKTVLITGA-ASGIGLAQARAFLA-----------QGAQVYGVDKQDKPDLSGNFHFLQLDLSDD--LEPLFDWV--PSV 68 (235)
T ss_pred CCEEEEcCC-CchHHHHHHHHHHH-----------CCCEEEEEeCCcccccCCcEEEEECChHHH--HHHHHHhh--CCC
Confidence 456776655 56677777777641 3468888887764332 3577889999987 44555554 369
Q ss_pred cEEEeCCC
Q 021161 121 DLVVCDGA 128 (316)
Q Consensus 121 DlVvsDga 128 (316)
|.|+++.+
T Consensus 69 d~lv~~ag 76 (235)
T PRK06550 69 DILCNTAG 76 (235)
T ss_pred CEEEECCC
Confidence 99998864
No 420
>PRK05875 short chain dehydrogenase; Provisional
Probab=68.15 E-value=30 Score=31.44 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=50.0
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC------CCcEEEecCccChhhHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI------EGVIQVQGDITNARTAE 109 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i------~gV~~i~gDIt~~~t~~ 109 (316)
++++|=.|+ .|+....+++++.. .+.+|++++..+.. .+ .++.++++|+++.....
T Consensus 7 ~k~vlItGa-sg~IG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~ 74 (276)
T PRK05875 7 DRTYLVTGG-GSGIGKGVAAGLVA-----------AGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVA 74 (276)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHH-----------CCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHH
Confidence 468888885 47788888888742 24688888876421 01 24678889999987655
Q ss_pred HHHhhc--CCccccEEEeCCC
Q 021161 110 VVIRHF--DGCKADLVVCDGA 128 (316)
Q Consensus 110 ~I~~~~--~~~~~DlVvsDga 128 (316)
.+.+.. ...++|.|+...+
T Consensus 75 ~~~~~~~~~~~~~d~li~~ag 95 (276)
T PRK05875 75 RAVDAATAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 444321 1136899998864
No 421
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.12 E-value=23 Score=31.32 Aligned_cols=75 Identities=12% Similarity=0.094 Sum_probs=51.7
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------C-CCCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~-i~gV~~i~gDIt~~~t~~~I 111 (316)
+.++|=.|+ .|+..+.+++.+.. .+.+|+.+|..+-. . -..+..++.|+++.....++
T Consensus 5 ~~~~lItG~-~g~iG~~~a~~l~~-----------~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 72 (253)
T PRK08217 5 DKVIVITGG-AQGLGRAMAEYLAQ-----------KGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEAT 72 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 567887875 67788888888742 24688889877521 0 12467789999998776665
Q ss_pred HhhcCC--ccccEEEeCCC
Q 021161 112 IRHFDG--CKADLVVCDGA 128 (316)
Q Consensus 112 ~~~~~~--~~~DlVvsDga 128 (316)
.+.... .++|.|++..+
T Consensus 73 ~~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 73 FAQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 554321 46899999854
No 422
>PRK12743 oxidoreductase; Provisional
Probab=68.10 E-value=27 Score=31.44 Aligned_cols=74 Identities=8% Similarity=-0.094 Sum_probs=47.5
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-------C---C-CCcEEEecCccChhhHHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------P---I-EGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-------~---i-~gV~~i~gDIt~~~t~~~I 111 (316)
++||=.|+ .|+....+++++.. .+.+|+.++..... . . ..+..++.|+++...++.+
T Consensus 3 k~vlItGa-s~giG~~~a~~l~~-----------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 70 (256)
T PRK12743 3 QVAIVTAS-DSGIGKACALLLAQ-----------QGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQA 70 (256)
T ss_pred CEEEEECC-CchHHHHHHHHHHH-----------CCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHH
Confidence 46777885 57788888888742 24677776543321 0 1 2477889999998765544
Q ss_pred HhhcC--CccccEEEeCCC
Q 021161 112 IRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 112 ~~~~~--~~~~DlVvsDga 128 (316)
.+... .+++|.|++..+
T Consensus 71 ~~~~~~~~~~id~li~~ag 89 (256)
T PRK12743 71 LDKLIQRLGRIDVLVNNAG 89 (256)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 43221 146999999864
No 423
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=67.58 E-value=7.6 Score=31.88 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=18.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHH
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRK 62 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~ 62 (316)
++-...||||||-|-..-.|.+.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E 79 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE 79 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC
Confidence 45678999999999887777654
No 424
>PRK07041 short chain dehydrogenase; Provisional
Probab=67.51 E-value=24 Score=30.92 Aligned_cols=65 Identities=15% Similarity=0.095 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC---CCcEEEecCccChhhHHHHHhhcCCcccc
Q 021161 51 APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (316)
Q Consensus 51 gPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i---~gV~~i~gDIt~~~t~~~I~~~~~~~~~D 121 (316)
|+|+....+++++.. .+.+|+.++..+.. .+ .+++++.+|+++...+..+.+.+ +++|
T Consensus 5 as~~iG~~~a~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~id 71 (230)
T PRK07041 5 GSSGIGLALARAFAA-----------EGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEA--GPFD 71 (230)
T ss_pred CCChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhc--CCCC
Confidence 668888888888742 24688989876421 11 35778899999998887776654 4699
Q ss_pred EEEeCCC
Q 021161 122 LVVCDGA 128 (316)
Q Consensus 122 lVvsDga 128 (316)
.++....
T Consensus 72 ~li~~ag 78 (230)
T PRK07041 72 HVVITAA 78 (230)
T ss_pred EEEECCC
Confidence 9998864
No 425
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=67.38 E-value=33 Score=33.06 Aligned_cols=93 Identities=20% Similarity=0.232 Sum_probs=51.0
Q ss_pred cCCCCeEEEECCCCCHHHHHH---HHHhCCCCCCCCCCCCCCCC-EEEEEeCCCCC----CCCCcEEEecCccC--hhhH
Q 021161 39 FEGVKRVVDLCAAPGSWSQVL---SRKLYLPAKLSPDSREGDLP-LIVAIDLQPMA----PIEGVIQVQGDITN--ARTA 108 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~L---a~~l~~~~~~~~~~~~~~~~-~IvaVDl~~~~----~i~gV~~i~gDIt~--~~t~ 108 (316)
++++.+||=.|+ |+..+.+ ++.+ +. +|+++|..+.. .--|+..+- |..+ ....
T Consensus 183 ~~~g~~VlV~G~--G~iG~~a~q~Ak~~--------------G~~~Vi~~~~~~~~~~~a~~~Ga~~~i-~~~~~~~~~~ 245 (368)
T TIGR02818 183 VEEGDTVAVFGL--GGIGLSVIQGARMA--------------KASRIIAIDINPAKFELAKKLGATDCV-NPNDYDKPIQ 245 (368)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHc--------------CCCeEEEEcCCHHHHHHHHHhCCCeEE-cccccchhHH
Confidence 467888888875 5555544 4443 24 79999887632 112332111 2221 1122
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCC-cEEEEE
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAK 166 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpG-G~fV~K 166 (316)
+.+.+...+ .+|+|+- ++|.. .++..+..+|++| |+++.-
T Consensus 246 ~~v~~~~~~-g~d~vid-----~~G~~------------~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 246 EVIVEITDG-GVDYSFE-----CIGNV------------NVMRAALECCHKGWGESIII 286 (368)
T ss_pred HHHHHHhCC-CCCEEEE-----CCCCH------------HHHHHHHHHhhcCCCeEEEE
Confidence 233333333 6898883 34421 2356677889887 998864
No 426
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.38 E-value=34 Score=32.35 Aligned_cols=96 Identities=20% Similarity=0.201 Sum_probs=53.9
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCC-EEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~-~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~ 113 (316)
++++.+||=.|+ |+..+.+.+.... .+. .|+++|..+.. .--|+..+ -|..+.....++..
T Consensus 164 ~~~g~~vlI~g~--g~iG~~~~~lak~-----------~G~~~v~~~~~~~~~~~~~~~~g~~~~-v~~~~~~~~~~i~~ 229 (351)
T cd08285 164 IKLGDTVAVFGI--GPVGLMAVAGARL-----------RGAGRIIAVGSRPNRVELAKEYGATDI-VDYKNGDVVEQILK 229 (351)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCeEEEEeCCHHHHHHHHHcCCceE-ecCCCCCHHHHHHH
Confidence 467788888864 5666555433210 123 68888887631 11233211 12233333445555
Q ss_pred hcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 114 ~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
...+..+|+|+. ++|.. ..+..+.++|+++|+++.
T Consensus 230 ~~~~~~~d~vld-----~~g~~------------~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 230 LTGGKGVDAVII-----AGGGQ------------DTFEQALKVLKPGGTISN 264 (351)
T ss_pred HhCCCCCcEEEE-----CCCCH------------HHHHHHHHHhhcCCEEEE
Confidence 555567999984 22211 235667888999999985
No 427
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=67.01 E-value=40 Score=33.22 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=59.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHhhc
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHF 115 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~~~ 115 (316)
++|..|.=.|+|-=+.+.+...+.. ...+|+|||+++.. .-.|.+-..-.....+..+.|.+..
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~a------------gA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T 251 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAA------------GAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELT 251 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHc------------CCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhc
Confidence 5677888888877777777665554 34699999999953 2234432211111102333344333
Q ss_pred CCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEcc
Q 021161 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (316)
Q Consensus 116 ~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 169 (316)
+..+|.++ +++|.. ..+..++..+.++|+.|+-=..
T Consensus 252 -~gG~d~~~-----e~~G~~------------~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 252 -DGGADYAF-----ECVGNV------------EVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred -CCCCCEEE-----EccCCH------------HHHHHHHHHHhcCCeEEEEecC
Confidence 34677775 566652 2456677788889999874333
No 428
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=66.97 E-value=74 Score=28.46 Aligned_cols=76 Identities=9% Similarity=0.023 Sum_probs=51.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC----CCcEEEecCccChhhHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEV 110 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i----~gV~~i~gDIt~~~t~~~ 110 (316)
.+.++|=.| |.|+....+++++.. .+.+|+.++.+.-. .+ ..+.++++|+++...++.
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~ 78 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGE-----------AGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIER 78 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 356788888 578889999988742 24688888876421 01 246788999999887754
Q ss_pred HHhhcC--CccccEEEeCCC
Q 021161 111 VIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDga 128 (316)
+.+... ..++|.|+...+
T Consensus 79 ~~~~~~~~~~~id~vi~~ag 98 (259)
T PRK08213 79 LAEETLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHHHHHhCCCCEEEECCC
Confidence 443321 146899998854
No 429
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=66.92 E-value=45 Score=31.95 Aligned_cols=93 Identities=14% Similarity=0.013 Sum_probs=52.1
Q ss_pred cCCCCeEEEECCC--CCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----CCCCcEEEecCccC-hhhHHH
Q 021161 39 FEGVKRVVDLCAA--PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITN-ARTAEV 110 (316)
Q Consensus 39 ~~~~~rVLDLcag--PG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----~i~gV~~i~gDIt~-~~t~~~ 110 (316)
++++.+||=.|++ -|.....+++.++ .+|++++.++.. .--|+..+- |-.+ ....+.
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G--------------~~Vi~~~~~~~k~~~~~~~lGa~~vi-~~~~~~~~~~~ 220 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHG--------------CYVVGSAGSSQKVDLLKNKLGFDEAF-NYKEEPDLDAA 220 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC--------------CEEEEEcCCHHHHHHHHHhcCCCEEE-ECCCcccHHHH
Confidence 4678899888873 4444444555543 678888876521 012432211 1111 122233
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
+.+.. +..+|+|+- +.|- ..+..+..+|++||++++
T Consensus 221 i~~~~-~~gvD~v~d-----~vG~-------------~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 221 LKRYF-PEGIDIYFD-----NVGG-------------DMLDAALLNMKIHGRIAV 256 (348)
T ss_pred HHHHC-CCCcEEEEE-----CCCH-------------HHHHHHHHHhccCCEEEE
Confidence 43333 346999983 3331 124567889999999986
No 430
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=66.56 E-value=50 Score=29.72 Aligned_cols=76 Identities=12% Similarity=0.117 Sum_probs=51.0
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC-CCcEEEecCccChhhHHHHHhh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i-~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
++++|=.|+ +|+....+++++.. .+.+|+.++.++.. .+ ..+..+++|+++....+...+.
T Consensus 6 ~k~vlVtGa-s~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (263)
T PRK06200 6 GQVALITGG-GSGIGRALVERFLA-----------EGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQ 73 (263)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHH
Confidence 467777775 56778888887742 34689888876521 12 2477889999998766554433
Q ss_pred c--CCccccEEEeCCCC
Q 021161 115 F--DGCKADLVVCDGAP 129 (316)
Q Consensus 115 ~--~~~~~DlVvsDgap 129 (316)
. ..+++|+++.+.+.
T Consensus 74 ~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 74 TVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 2 12479999998653
No 431
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=66.43 E-value=16 Score=36.38 Aligned_cols=70 Identities=20% Similarity=0.187 Sum_probs=52.8
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-------CCCCcEEEecCccChhhHHHHHhhc
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIRHF 115 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-------~i~gV~~i~gDIt~~~t~~~I~~~~ 115 (316)
++||=||| |+..+++++.+... .+..|+..|.++.. ...+++.++-|+.+.+.+.++++
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~----------~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~-- 67 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQN----------GDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK-- 67 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhC----------CCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh--
Confidence 57888999 99999999987521 33799999999642 13479999999999877666553
Q ss_pred CCccccEEEeCCCC
Q 021161 116 DGCKADLVVCDGAP 129 (316)
Q Consensus 116 ~~~~~DlVvsDgap 129 (316)
.+|+||+=+.+
T Consensus 68 ---~~d~VIn~~p~ 78 (389)
T COG1748 68 ---DFDLVINAAPP 78 (389)
T ss_pred ---cCCEEEEeCCc
Confidence 35999987644
No 432
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=65.77 E-value=90 Score=27.86 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=50.1
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC------CCcEEEecCccChhhHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI------EGVIQVQGDITNARTAEV 110 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i------~gV~~i~gDIt~~~t~~~ 110 (316)
++||=.|+ .|+....+++++.. .+.+|+.+|.+... .+ ..+..+.+|+++...+..
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~-----------~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~ 70 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAE-----------EGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLA 70 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHH
Confidence 46788884 57888888888742 24689999987531 01 247788999999876554
Q ss_pred HHhhcC--CccccEEEeCCC
Q 021161 111 VIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDga 128 (316)
+.+... .++.|.|+...+
T Consensus 71 ~~~~~~~~~~~id~vv~~ag 90 (259)
T PRK12384 71 LSRGVDEIFGRVDLLVYNAG 90 (259)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 443321 146899998864
No 433
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=65.77 E-value=26 Score=32.73 Aligned_cols=93 Identities=15% Similarity=0.038 Sum_probs=49.8
Q ss_pred cCCCCeEEEECCCCCHHHHH---HHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCcEEEecCccChhhHHHH
Q 021161 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~---La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I 111 (316)
++++.+||=.|++ |+..+. +++.. +.+|++++.++.. .--|+..+- |..+.+...+.
T Consensus 136 ~~~g~~VLI~ga~-g~vG~~aiqlAk~~--------------G~~Vi~~~~s~~~~~~~~~lGa~~vi-~~~~~~~~~~~ 199 (325)
T TIGR02825 136 VKGGETVMVNAAA-GAVGSVVGQIAKLK--------------GCKVVGAAGSDEKVAYLKKLGFDVAF-NYKTVKSLEET 199 (325)
T ss_pred CCCCCEEEEeCCc-cHHHHHHHHHHHHc--------------CCEEEEEeCCHHHHHHHHHcCCCEEE-eccccccHHHH
Confidence 4678899877753 444444 44443 3578888776521 012332111 11111111222
Q ss_pred HhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 112 ~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
.....++.+|+|+- +.|- ..+..+..+|++||+++.
T Consensus 200 ~~~~~~~gvdvv~d-----~~G~-------------~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 200 LKKASPDGYDCYFD-----NVGG-------------EFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred HHHhCCCCeEEEEE-----CCCH-------------HHHHHHHHHhCcCcEEEE
Confidence 22233457999983 2331 123567889999999996
No 434
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=65.74 E-value=2.3 Score=42.73 Aligned_cols=46 Identities=26% Similarity=0.318 Sum_probs=36.5
Q ss_pred HHhhhHHc-CCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC
Q 021161 29 LLQIDEEF-NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (316)
Q Consensus 29 L~qId~~f-~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~ 89 (316)
|..-++++ ++|++|..|-|++||-|-|+.-++++. ++|+|.|+++.
T Consensus 236 L~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~---------------crV~aNDLNpe 282 (495)
T KOG2078|consen 236 LSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKG---------------CRVYANDLNPE 282 (495)
T ss_pred chhHHHHHhhccCCcchhhhhhcCcCccccchhhcC---------------cEEEecCCCHH
Confidence 44434443 268999999999999999998887753 79999999984
No 435
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=65.52 E-value=84 Score=28.02 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=51.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC----CCcEEEecCccChhhHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEV 110 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i----~gV~~i~gDIt~~~t~~~ 110 (316)
.+.++|=.| |.|+....+++++.. .+.+|+.++.++.. .+ ..+..+.+|+++......
T Consensus 8 ~~k~~lItG-as~giG~~ia~~L~~-----------~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~ 75 (254)
T PRK08085 8 AGKNILITG-SAQGIGFLLATGLAE-----------YGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEA 75 (254)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHH-----------cCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHH
Confidence 356788777 557788888888742 34688888877521 01 235677899999887665
Q ss_pred HHhhcC--CccccEEEeCCC
Q 021161 111 VIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDga 128 (316)
+.+... .+++|.|+...+
T Consensus 76 ~~~~~~~~~~~id~vi~~ag 95 (254)
T PRK08085 76 AIEHIEKDIGPIDVLINNAG 95 (254)
T ss_pred HHHHHHHhcCCCCEEEECCC
Confidence 544321 146999999864
No 436
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.34 E-value=35 Score=30.12 Aligned_cols=76 Identities=9% Similarity=0.020 Sum_probs=51.9
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------C----CCCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----IEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~----i~gV~~i~gDIt~~~t~~~I 111 (316)
+.++|=.|+ +|+....+++++.. .+.+|+.++..+.. . -..+.++++|+++...+..+
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~-----------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 74 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAK-----------EGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAA 74 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHH
Confidence 357888885 78888888887641 34688888876521 0 12477889999998876665
Q ss_pred HhhcC--CccccEEEeCCCC
Q 021161 112 IRHFD--GCKADLVVCDGAP 129 (316)
Q Consensus 112 ~~~~~--~~~~DlVvsDgap 129 (316)
.+... .+.+|.|++..+.
T Consensus 75 ~~~~~~~~~~id~vi~~ag~ 94 (239)
T PRK07666 75 IEQLKNELGSIDILINNAGI 94 (239)
T ss_pred HHHHHHHcCCccEEEEcCcc
Confidence 54321 1369999998654
No 437
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=65.30 E-value=1.2e+02 Score=28.28 Aligned_cols=71 Identities=20% Similarity=0.127 Sum_probs=45.6
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------C----CCCcEEEecCccChhhHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P----IEGVIQVQGDITNARTAE 109 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~----i~gV~~i~gDIt~~~t~~ 109 (316)
+++||=.| |+|....++++++.. .+.+|+++..+... . ..+++++++|+++.....
T Consensus 5 ~~~vlVTG-atG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 72 (322)
T PLN02986 5 GKLVCVTG-ASGYIASWIVKLLLL-----------RGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFE 72 (322)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHH-----------CCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHH
Confidence 45555554 788888998887741 23567655333210 1 135788999999987654
Q ss_pred HHHhhcCCccccEEEeCCCC
Q 021161 110 VVIRHFDGCKADLVVCDGAP 129 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgap 129 (316)
.+. . .+|.|+.-+++
T Consensus 73 ~~~---~--~~d~vih~A~~ 87 (322)
T PLN02986 73 QAI---E--GCDAVFHTASP 87 (322)
T ss_pred HHH---h--CCCEEEEeCCC
Confidence 433 2 48999988765
No 438
>PRK08303 short chain dehydrogenase; Provisional
Probab=65.14 E-value=79 Score=29.79 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=49.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC---------CC-------C----CCcEEEec
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------AP-------I----EGVIQVQG 100 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~---------~~-------i----~gV~~i~g 100 (316)
.++++|-.|++ +|+-..+++.+.. .+.+|+.++.+.. .. + ..+..++.
T Consensus 7 ~~k~~lITGgs-~GIG~aia~~la~-----------~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (305)
T PRK08303 7 RGKVALVAGAT-RGAGRGIAVELGA-----------AGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQV 74 (305)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHH-----------CCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEc
Confidence 35688888855 5588888887741 3468888887631 00 1 13567899
Q ss_pred CccChhhHHHHHhhcC--CccccEEEeCC
Q 021161 101 DITNARTAEVVIRHFD--GCKADLVVCDG 127 (316)
Q Consensus 101 DIt~~~t~~~I~~~~~--~~~~DlVvsDg 127 (316)
|+++...++.+.+... -++.|++|++.
T Consensus 75 Dv~~~~~v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 75 DHLVPEQVRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred CCCCHHHHHHHHHHHHHHcCCccEEEECC
Confidence 9999887665544321 14799999985
No 439
>PRK06180 short chain dehydrogenase; Provisional
Probab=65.12 E-value=96 Score=28.24 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=50.8
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----C--CCCcEEEecCccChhhHHHHHhh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----P--IEGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----~--i~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
+++||=.|+ .|+....+++++.. .+.+|++++.++.. . -.++..+++|+++...+..+.+.
T Consensus 4 ~~~vlVtGa-sggiG~~la~~l~~-----------~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~ 71 (277)
T PRK06180 4 MKTWLITGV-SSGFGRALAQAALA-----------AGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVAD 71 (277)
T ss_pred CCEEEEecC-CChHHHHHHHHHHh-----------CcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHH
Confidence 456776665 67788888888741 34689999986531 1 12477889999998766554432
Q ss_pred cC--CccccEEEeCCCC
Q 021161 115 FD--GCKADLVVCDGAP 129 (316)
Q Consensus 115 ~~--~~~~DlVvsDgap 129 (316)
.. -+.+|.|+...+.
T Consensus 72 ~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 72 AEATFGPIDVLVNNAGY 88 (277)
T ss_pred HHHHhCCCCEEEECCCc
Confidence 21 1368999988654
No 440
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=65.06 E-value=70 Score=28.12 Aligned_cols=75 Identities=11% Similarity=0.049 Sum_probs=50.3
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----------CCCCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----------~i~gV~~i~gDIt~~~t~~~I 111 (316)
+++||=.|+ .|+....+++.+.. .+.+|++++..+-. .-..+.++.+|+++...+...
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~-----------~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~ 73 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAA-----------DGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAA 73 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 467887775 68888888887641 24688888876421 012477889999998776655
Q ss_pred HhhcC--CccccEEEeCCC
Q 021161 112 IRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 112 ~~~~~--~~~~DlVvsDga 128 (316)
.+... ..++|.|++..+
T Consensus 74 ~~~~~~~~~~~d~vi~~ag 92 (251)
T PRK12826 74 VAAGVEDFGRLDILVANAG 92 (251)
T ss_pred HHHHHHHhCCCCEEEECCC
Confidence 43221 136999998864
No 441
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=65.03 E-value=18 Score=37.60 Aligned_cols=99 Identities=17% Similarity=0.154 Sum_probs=65.9
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-----------CCCcEEEecCccChhhHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-----------i~gV~~i~gDIt~~~t~~~ 110 (316)
..+++=||+|-|-......+... +.+...+++||+-+|.+- -..|+.+.+|+++...
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~---------~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~a--- 435 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAE---------ETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNA--- 435 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHH---------HhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCC---
Confidence 56788999999988777654432 112468999999999652 1358899999998541
Q ss_pred HHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
+.+++|++||-.- ...|...+. -.-|.-+.+.|||.|..+=.
T Consensus 436 -----p~eq~DI~VSELL-GSFGDNELS--------PECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 436 -----PREQADIIVSELL-GSFGDNELS--------PECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred -----chhhccchHHHhh-ccccCccCC--------HHHHHHHHhhcCCCceEccc
Confidence 1267999998720 112222222 23466788999999977643
No 442
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=64.83 E-value=82 Score=27.88 Aligned_cols=75 Identities=19% Similarity=0.060 Sum_probs=51.3
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------C----CCCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----IEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~----i~gV~~i~gDIt~~~t~~~I 111 (316)
+++||=.| |+|+....+++++.. .+.+|+.++..+.. . -..+..+++|+++...++.+
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 71 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAK-----------EGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAG 71 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHH-----------CCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHH
Confidence 35666555 578899999988742 24689998887632 1 13577889999998876655
Q ss_pred HhhcC--CccccEEEeCCC
Q 021161 112 IRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 112 ~~~~~--~~~~DlVvsDga 128 (316)
.+... .+.+|+|++..+
T Consensus 72 ~~~~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 72 IDYAVETFGGVDILVNNAG 90 (258)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 54321 136999999864
No 443
>PRK08263 short chain dehydrogenase; Provisional
Probab=64.71 E-value=49 Score=30.13 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=49.3
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC-CCcEEEecCccChhhHHHHHhh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i-~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
+.+||=.| |+|+....+++++.. .+.+|+.++.++.. .. ..+..+++|+++...+..+.+.
T Consensus 3 ~k~vlItG-asg~iG~~~a~~l~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 70 (275)
T PRK08263 3 EKVWFITG-ASRGFGRAWTEAALE-----------RGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVET 70 (275)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHH
Confidence 34677777 467788888887741 24688888876531 11 2467789999998776554432
Q ss_pred c--CCccccEEEeCCC
Q 021161 115 F--DGCKADLVVCDGA 128 (316)
Q Consensus 115 ~--~~~~~DlVvsDga 128 (316)
. .-..+|.|++..+
T Consensus 71 ~~~~~~~~d~vi~~ag 86 (275)
T PRK08263 71 AVEHFGRLDIVVNNAG 86 (275)
T ss_pred HHHHcCCCCEEEECCC
Confidence 2 1136899998864
No 444
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=64.45 E-value=86 Score=29.23 Aligned_cols=63 Identities=21% Similarity=0.298 Sum_probs=42.6
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCCCCCcEEEecCccChhhHHHHHhhcCCccccEE
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLV 123 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~i~gV~~i~gDIt~~~t~~~I~~~~~~~~~DlV 123 (316)
+||=.| |.|-.-+++.+++.. .++|+++|.... .+.+|+++...+.+++ .+.++|.|
T Consensus 2 ~iLVtG-~~GfiGs~l~~~L~~------------~g~V~~~~~~~~-------~~~~Dl~d~~~~~~~~---~~~~~D~V 58 (299)
T PRK09987 2 NILLFG-KTGQVGWELQRALAP------------LGNLIALDVHST-------DYCGDFSNPEGVAETV---RKIRPDVI 58 (299)
T ss_pred eEEEEC-CCCHHHHHHHHHhhc------------cCCEEEeccccc-------cccCCCCCHHHHHHHH---HhcCCCEE
Confidence 455555 678888899888741 236888886431 3468999987655443 33468999
Q ss_pred EeCCCC
Q 021161 124 VCDGAP 129 (316)
Q Consensus 124 vsDgap 129 (316)
+.-.+.
T Consensus 59 ih~Aa~ 64 (299)
T PRK09987 59 VNAAAH 64 (299)
T ss_pred EECCcc
Confidence 976654
No 445
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=64.45 E-value=3.3 Score=38.40 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=39.0
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------------C-----CCCcEEEecCc
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------P-----IEGVIQVQGDI 102 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------------~-----i~gV~~i~gDI 102 (316)
.+|||.-||=|.=+.+++. ++ ++|++++-+|.. . +..++.+++|.
T Consensus 77 ~~VLDaTaGLG~Da~vlA~-~G--------------~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLAS-LG--------------CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp --EEETT-TTSHHHHHHHH-HT----------------EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred CEEEECCCcchHHHHHHHc-cC--------------CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 3999999999999999985 43 689999999841 1 13578888888
Q ss_pred cChhhHHHHHhhcCCccccEEEeCCCCCC
Q 021161 103 TNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (316)
Q Consensus 103 t~~~t~~~I~~~~~~~~~DlVvsDgapdv 131 (316)
.+. +. ....++|+|..|.++..
T Consensus 142 ~~~------L~-~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 142 LEY------LR-QPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCH------CC-CHSS--SEEEE--S---
T ss_pred HHH------Hh-hcCCCCCEEEECCCCCC
Confidence 763 11 23478999999987643
No 446
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=64.34 E-value=30 Score=32.84 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=53.8
Q ss_pred CeEEEECCCCCHHHHHHHH-HhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-------------CCCcEEEecCccChhhH
Q 021161 43 KRVVDLCAAPGSWSQVLSR-KLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------------IEGVIQVQGDITNARTA 108 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~-~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-------------i~gV~~i~gDIt~~~t~ 108 (316)
.+|+=+|+||=-+|..+.. +.. .+..|+++|+.+.+. -.++.++.+|+.+...
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~------------~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~- 188 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHG------------PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY- 188 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HT------------T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G-
T ss_pred ceEEEEcCCCcchHHHHHHHHhC------------CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc-
Confidence 4999999999999887654 332 357899999998531 2468999999987542
Q ss_pred HHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC
Q 021161 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (316)
Q Consensus 109 ~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~ 170 (316)
+-..||+|+--. -+ |.-..+. ...|....+.++||..+++.--.|
T Consensus 189 -------dl~~~DvV~lAa--lV-g~~~e~K-------~~Il~~l~~~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 189 -------DLKEYDVVFLAA--LV-GMDAEPK-------EEILEHLAKHMAPGARLVVRSAHG 233 (276)
T ss_dssp -------G----SEEEE-T--T--S----SH-------HHHHHHHHHHS-TTSEEEEEE--G
T ss_pred -------ccccCCEEEEhh--hc-ccccchH-------HHHHHHHHhhCCCCcEEEEecchh
Confidence 124799999753 12 2111111 245667788999999999874433
No 447
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=63.89 E-value=1e+02 Score=29.19 Aligned_cols=69 Identities=22% Similarity=0.169 Sum_probs=44.6
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-----CCCCCcEEEecCcc-ChhhHHHHHhhcCC
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----APIEGVIQVQGDIT-NARTAEVVIRHFDG 117 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-----~~i~gV~~i~gDIt-~~~t~~~I~~~~~~ 117 (316)
+||= --|+|-...+|++.+.. ..+..|+++|.... .+.+++.++.+|++ +...+..+ +.
T Consensus 3 ~ilV-tGatGfiGs~l~~~L~~----------~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~---~~- 67 (347)
T PRK11908 3 KVLI-LGVNGFIGHHLSKRILE----------TTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYH---VK- 67 (347)
T ss_pred EEEE-ECCCcHHHHHHHHHHHh----------CCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHH---Hc-
Confidence 5553 34688899999888741 11358999997642 12356889999998 44433322 32
Q ss_pred ccccEEEeCCC
Q 021161 118 CKADLVVCDGA 128 (316)
Q Consensus 118 ~~~DlVvsDga 128 (316)
.+|.|+.-++
T Consensus 68 -~~d~ViH~aa 77 (347)
T PRK11908 68 -KCDVILPLVA 77 (347)
T ss_pred -CCCEEEECcc
Confidence 5899986554
No 448
>PLN02214 cinnamoyl-CoA reductase
Probab=63.86 E-value=1.4e+02 Score=28.49 Aligned_cols=72 Identities=19% Similarity=0.142 Sum_probs=49.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-------C----CCCcEEEecCccChhhHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------P----IEGVIQVQGDITNARTAE 109 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-------~----i~gV~~i~gDIt~~~t~~ 109 (316)
.+++||=.|+ +|....++++.+.. .+.+|++++...-. . ..++.++++|+++...+.
T Consensus 9 ~~~~vlVTGa-tGfIG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 76 (342)
T PLN02214 9 AGKTVCVTGA-GGYIASWIVKILLE-----------RGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALK 76 (342)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHH-----------CcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHH
Confidence 4567887776 68888888887741 24578887765421 1 124778899999977655
Q ss_pred HHHhhcCCccccEEEeCCCC
Q 021161 110 VVIRHFDGCKADLVVCDGAP 129 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgap 129 (316)
..+ . .+|.|+.-+++
T Consensus 77 ~~~---~--~~d~Vih~A~~ 91 (342)
T PLN02214 77 AAI---D--GCDGVFHTASP 91 (342)
T ss_pred HHH---h--cCCEEEEecCC
Confidence 433 2 48999988765
No 449
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=63.56 E-value=77 Score=29.73 Aligned_cols=77 Identities=13% Similarity=0.115 Sum_probs=50.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC----CCcEEEecCccChhhHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEV 110 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i----~gV~~i~gDIt~~~t~~~ 110 (316)
.+++||=.|+ .|+....+++.+.. .+.+|+.++.+... .+ ..+.+++.|+++...+..
T Consensus 5 ~~k~vlVTGa-s~gIG~~~a~~L~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~ 72 (322)
T PRK07453 5 AKGTVIITGA-SSGVGLYAAKALAK-----------RGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRR 72 (322)
T ss_pred CCCEEEEEcC-CChHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHH
Confidence 3556777775 57788888877741 24688888865421 11 247788999999887665
Q ss_pred HHhhcC--CccccEEEeCCCC
Q 021161 111 VIRHFD--GCKADLVVCDGAP 129 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDgap 129 (316)
+.+.+. ..++|+||.+.+.
T Consensus 73 ~~~~~~~~~~~iD~li~nAg~ 93 (322)
T PRK07453 73 FVDDFRALGKPLDALVCNAAV 93 (322)
T ss_pred HHHHHHHhCCCccEEEECCcc
Confidence 544321 2469999999753
No 450
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=63.42 E-value=65 Score=29.00 Aligned_cols=75 Identities=11% Similarity=0.153 Sum_probs=48.1
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----C-C-CCcEEEecCccChhhHHHHHhh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----P-I-EGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----~-i-~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
++++|=.|+ +|+.-..+++++.. .+.+|+.++.+.-. . . ..+..+++|+++........+.
T Consensus 5 ~k~vlItGa-s~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (262)
T TIGR03325 5 GEVVLVTGG-ASGLGRAIVDRFVA-----------EGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVAR 72 (262)
T ss_pred CcEEEEECC-CChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHH
Confidence 456777776 46677777777641 35689988876521 1 1 2467789999997665543332
Q ss_pred cC--CccccEEEeCCC
Q 021161 115 FD--GCKADLVVCDGA 128 (316)
Q Consensus 115 ~~--~~~~DlVvsDga 128 (316)
.. -++.|.++.+.+
T Consensus 73 ~~~~~g~id~li~~Ag 88 (262)
T TIGR03325 73 CVAAFGKIDCLIPNAG 88 (262)
T ss_pred HHHHhCCCCEEEECCC
Confidence 21 146899999864
No 451
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=62.76 E-value=76 Score=30.27 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=49.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------------CCCCcEEEecCccCh
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITNA 105 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------------~i~gV~~i~gDIt~~ 105 (316)
..++||=.| |+|-.-.+|.+++.. .+.+|+++|..... ...++.++.+|+++.
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~-----------~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLF-----------LNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKF 81 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHH-----------CCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCH
Confidence 346777777 688888899888741 23589999974321 013577899999997
Q ss_pred hhHHHHHhhcCCccccEEEeCCCC
Q 021161 106 RTAEVVIRHFDGCKADLVVCDGAP 129 (316)
Q Consensus 106 ~t~~~I~~~~~~~~~DlVvsDgap 129 (316)
..+..++ . .+|.|+.-++.
T Consensus 82 ~~l~~~~---~--~~d~ViHlAa~ 100 (348)
T PRK15181 82 TDCQKAC---K--NVDYVLHQAAL 100 (348)
T ss_pred HHHHHHh---h--CCCEEEECccc
Confidence 6544433 2 48999987654
No 452
>PRK06057 short chain dehydrogenase; Provisional
Probab=62.46 E-value=87 Score=27.99 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=50.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CCCCcEEEecCccChhhHHHHHhh
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
.+++||=.|++ |+....+++++.. .+.+|+.+|.++-. .+ +..+++.|+++...++.+.+.
T Consensus 6 ~~~~vlItGas-ggIG~~~a~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~ 72 (255)
T PRK06057 6 AGRVAVITGGG-SGIGLATARRLAA-----------EGATVVVGDIDPEAGKAAADEV-GGLFVPTDVTDEDAVNALFDT 72 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHc-CCcEEEeeCCCHHHHHHHHHH
Confidence 35788888874 7788888888742 34688888877531 12 235788999998766655543
Q ss_pred cC--CccccEEEeCCC
Q 021161 115 FD--GCKADLVVCDGA 128 (316)
Q Consensus 115 ~~--~~~~DlVvsDga 128 (316)
.. ..++|.|+...+
T Consensus 73 ~~~~~~~id~vi~~ag 88 (255)
T PRK06057 73 AAETYGSVDIAFNNAG 88 (255)
T ss_pred HHHHcCCCCEEEECCC
Confidence 21 146899988753
No 453
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=62.43 E-value=53 Score=31.01 Aligned_cols=97 Identities=19% Similarity=0.132 Sum_probs=55.0
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCC-EEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~-~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~ 113 (316)
++++.+|+=.|+ |+..+.+.+.... .+. +|++++-++.. .--|+..+- |..+....+.+.+
T Consensus 170 ~~~g~~vlI~g~--g~vG~~a~q~a~~-----------~G~~~v~~~~~~~~~~~~~~~~ga~~~i-~~~~~~~~~~l~~ 235 (351)
T cd08233 170 FKPGDTALVLGA--GPIGLLTILALKA-----------AGASKIIVSEPSEARRELAEELGATIVL-DPTEVDVVAEVRK 235 (351)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCEEEEECCCHHHHHHHHHhCCCEEE-CCCccCHHHHHHH
Confidence 356778887763 6777766544321 134 78888765521 011332211 3333334445555
Q ss_pred hcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 114 ~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
...+..+|+|+-- +|.. ..+..+.+.|++||+++.-
T Consensus 236 ~~~~~~~d~vid~-----~g~~------------~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 236 LTGGGGVDVSFDC-----AGVQ------------ATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred HhCCCCCCEEEEC-----CCCH------------HHHHHHHHhccCCCEEEEE
Confidence 5555569999942 2210 2345677899999999863
No 454
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=61.85 E-value=23 Score=33.29 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=22.6
Q ss_pred ccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 118 ~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
..+|+|+ |++|.. ..+..+.++|++||++++-
T Consensus 199 ~g~Dvvi-----d~~G~~------------~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 199 RDYRAIY-----DASGDP------------SLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred CCCCEEE-----ECCCCH------------HHHHHHHHhhhcCcEEEEE
Confidence 4689888 345531 2356778899999999964
No 455
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=61.71 E-value=1.2e+02 Score=26.90 Aligned_cols=76 Identities=12% Similarity=-0.003 Sum_probs=50.3
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-CCCcEEEecCccChhhHHHHHhhcC--Cc
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-IEGVIQVQGDITNARTAEVVIRHFD--GC 118 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-i~gV~~i~gDIt~~~t~~~I~~~~~--~~ 118 (316)
++++|=.|+ .|+....+++++.. .+.+|++++..+... -..+..+++|+++......+.+... ..
T Consensus 8 ~k~vlItGa-s~~iG~~la~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 75 (252)
T PRK08220 8 GKTVWVTGA-AQGIGYAVALAFVE-----------AGAKVIGFDQAFLTQEDYPFATFVLDVSDAAAVAQVCQRLLAETG 75 (252)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEEecchhhhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 456665654 46677888877641 356899998876321 2347788999999877666544321 14
Q ss_pred cccEEEeCCCC
Q 021161 119 KADLVVCDGAP 129 (316)
Q Consensus 119 ~~DlVvsDgap 129 (316)
++|+|+...+.
T Consensus 76 ~id~vi~~ag~ 86 (252)
T PRK08220 76 PLDVLVNAAGI 86 (252)
T ss_pred CCCEEEECCCc
Confidence 68999998653
No 456
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=61.70 E-value=78 Score=30.40 Aligned_cols=110 Identities=18% Similarity=0.073 Sum_probs=62.6
Q ss_pred hHHhhhHHcCCcCCCCeEEEECCCC--CHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-C---CCCcEEEecC
Q 021161 28 KLLQIDEEFNIFEGVKRVVDLCAAP--GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-P---IEGVIQVQGD 101 (316)
Q Consensus 28 KL~qId~~f~~~~~~~rVLDLcagP--G~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-~---i~gV~~i~gD 101 (316)
..++....+.=++++.+||=.|++- |.+..-|++.++ ..++++--+... . --|..... |
T Consensus 129 TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--------------~~~v~~~~s~~k~~~~~~lGAd~vi-~ 193 (326)
T COG0604 129 TAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALG--------------ATVVAVVSSSEKLELLKELGADHVI-N 193 (326)
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcC--------------CcEEEEecCHHHHHHHHhcCCCEEE-c
Confidence 3444444444467899999998644 445555666663 244444444321 0 11211111 2
Q ss_pred ccChhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccC
Q 021161 102 ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (316)
Q Consensus 102 It~~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~ 170 (316)
..+....+++.+...+..+|+|+.- .|- ..+..+...|+++|+++.--..+
T Consensus 194 y~~~~~~~~v~~~t~g~gvDvv~D~-----vG~-------------~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 194 YREEDFVEQVRELTGGKGVDVVLDT-----VGG-------------DTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCcccHHHHHHHHcCCCCceEEEEC-----CCH-------------HHHHHHHHHhccCCEEEEEecCC
Confidence 3333345566666677789999953 221 22456788999999999855543
No 457
>PRK06138 short chain dehydrogenase; Provisional
Probab=61.67 E-value=70 Score=28.28 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=50.4
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC---CCcEEEecCccChhhHHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i---~gV~~i~gDIt~~~t~~~I~ 112 (316)
++++|=.|| .|++...+++.+.. .+.+|++++.+... .+ ..+..+++|+++...++++.
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 72 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAR-----------EGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALV 72 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHH-----------CCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 456777776 57788888887741 24688888766421 01 23678899999987766544
Q ss_pred hhcC--CccccEEEeCCCC
Q 021161 113 RHFD--GCKADLVVCDGAP 129 (316)
Q Consensus 113 ~~~~--~~~~DlVvsDgap 129 (316)
+... ..++|.|+...+.
T Consensus 73 ~~i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 73 DFVAARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 3321 1479999998653
No 458
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=61.65 E-value=53 Score=31.48 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=51.5
Q ss_pred cCCCCeEEEECCCCCHHHHHH---HHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC----CCCcEEEecCccChhhHHHH
Q 021161 39 FEGVKRVVDLCAAPGSWSQVL---SRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~L---a~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~----i~gV~~i~gDIt~~~t~~~I 111 (316)
++++.+||=.|+ |+..+.+ ++..+ ..+|+++|..+... --|+..+- +..+......+
T Consensus 184 ~~~g~~vlI~g~--g~vG~~~~~la~~~G-------------~~~v~~~~~~~~k~~~~~~~g~~~~i-~~~~~~~~~~v 247 (365)
T cd08278 184 PRPGSSIAVFGA--GAVGLAAVMAAKIAG-------------CTTIIAVDIVDSRLELAKELGATHVI-NPKEEDLVAAI 247 (365)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcC-------------CCeEEEEeCCHHHHHHHHHcCCcEEe-cCCCcCHHHHH
Confidence 356788888764 5555544 44432 12689998876321 11332211 12222223344
Q ss_pred HhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 112 ~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
.+.. +..+|+|+- +.|.. ..+..+.++|+++|+++.
T Consensus 248 ~~~~-~~~~d~vld-----~~g~~------------~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 248 REIT-GGGVDYALD-----TTGVP------------AVIEQAVDALAPRGTLAL 283 (365)
T ss_pred HHHh-CCCCcEEEE-----CCCCc------------HHHHHHHHHhccCCEEEE
Confidence 4444 567999984 33321 124567889999999986
No 459
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=61.60 E-value=40 Score=31.96 Aligned_cols=92 Identities=16% Similarity=0.115 Sum_probs=50.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCC-EEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHhhc
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHF 115 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~-~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~~~ 115 (316)
++.+||=.|| |+..+.+.+.... .+. +|+++|.++.. .--|.+.+- |..+.. ..++...
T Consensus 169 ~g~~VlV~G~--G~vG~~aiqlak~-----------~G~~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~-~~~~~~~- 232 (343)
T PRK09880 169 QGKRVFVSGV--GPIGCLIVAAVKT-----------LGAAEIVCADVSPRSLSLAREMGADKLV-NPQNDD-LDHYKAE- 232 (343)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHH-----------cCCcEEEEEeCCHHHHHHHHHcCCcEEe-cCCccc-HHHHhcc-
Confidence 5788888875 6666665443210 123 78999988732 112432211 222211 1222221
Q ss_pred CCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 116 ~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
.+.+|+|+- ++|.. ..+..+.++|++||+++.-
T Consensus 233 -~g~~D~vid-----~~G~~------------~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 233 -KGYFDVSFE-----VSGHP------------SSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred -CCCCCEEEE-----CCCCH------------HHHHHHHHHhhcCCEEEEE
Confidence 235898883 44431 2345678899999999974
No 460
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.48 E-value=61 Score=28.43 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=50.1
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEE-eCCCCC------CC----CCcEEEecCccChhhHHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAI-DLQPMA------PI----EGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaV-Dl~~~~------~i----~gV~~i~gDIt~~~t~~~I 111 (316)
+++|=.| |+|+....+++.+.. .+.+|+.+ +..+.. .+ ..+.++++|+++...+..+
T Consensus 6 ~~ilI~G-asg~iG~~la~~l~~-----------~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 73 (247)
T PRK05565 6 KVAIVTG-ASGGIGRAIAELLAK-----------EGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENL 73 (247)
T ss_pred CEEEEeC-CCcHHHHHHHHHHHH-----------CCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 4666666 468899998887641 24677777 765431 01 2477889999998876655
Q ss_pred HhhcC--CccccEEEeCCCCC
Q 021161 112 IRHFD--GCKADLVVCDGAPD 130 (316)
Q Consensus 112 ~~~~~--~~~~DlVvsDgapd 130 (316)
.+... ...+|.|+...+..
T Consensus 74 ~~~~~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 74 VEQIVEKFGKIDILVNNAGIS 94 (247)
T ss_pred HHHHHHHhCCCCEEEECCCcC
Confidence 44321 13699999987543
No 461
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=61.35 E-value=49 Score=31.01 Aligned_cols=96 Identities=21% Similarity=0.187 Sum_probs=51.9
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCE-EEEEeCCCCC-C---CCCcEEEecCccChhhHHHHHh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL-IVAIDLQPMA-P---IEGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~-IvaVDl~~~~-~---i~gV~~i~gDIt~~~t~~~I~~ 113 (316)
++++.+|+-.|+ |+..+.+.+.... .+.+ |++++-++.. . -.|+..+. +..+.. ...+..
T Consensus 157 ~~~~~~vlI~g~--g~~g~~~~~lA~~-----------~G~~~v~~~~~~~~~~~~l~~~g~~~~~-~~~~~~-~~~~~~ 221 (343)
T cd08236 157 ITLGDTVVVIGA--GTIGLLAIQWLKI-----------LGAKRVIAVDIDDEKLAVARELGADDTI-NPKEED-VEKVRE 221 (343)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCEEEEEcCCHHHHHHHHHcCCCEEe-cCcccc-HHHHHH
Confidence 467888998864 5655554433210 1244 7777765421 0 11322111 112222 344555
Q ss_pred hcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 114 ~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
...+..+|+|+.- .|- ...+..+.++|+++|+++.-
T Consensus 222 ~~~~~~~d~vld~-----~g~------------~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 222 LTEGRGADLVIEA-----AGS------------PATIEQALALARPGGKVVLV 257 (343)
T ss_pred HhCCCCCCEEEEC-----CCC------------HHHHHHHHHHhhcCCEEEEE
Confidence 5555679999943 221 02345678899999998863
No 462
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=61.31 E-value=16 Score=38.51 Aligned_cols=67 Identities=22% Similarity=0.245 Sum_probs=47.6
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHhhcCCc
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~~~~~~ 118 (316)
.+|+=+| -|.+.+.+++.+.. .+..++.+|.++.. .-.|...+.||.+++++++ ..+-+
T Consensus 401 ~~vII~G--~Gr~G~~va~~L~~-----------~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~----~agi~ 463 (621)
T PRK03562 401 PRVIIAG--FGRFGQIVGRLLLS-----------SGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLE----SAGAA 463 (621)
T ss_pred CcEEEEe--cChHHHHHHHHHHh-----------CCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHH----hcCCC
Confidence 4666655 55677888887742 24579999999852 2358889999999987654 33446
Q ss_pred cccEEEeC
Q 021161 119 KADLVVCD 126 (316)
Q Consensus 119 ~~DlVvsD 126 (316)
++|+|++-
T Consensus 464 ~A~~vvv~ 471 (621)
T PRK03562 464 KAEVLINA 471 (621)
T ss_pred cCCEEEEE
Confidence 89999874
No 463
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=61.30 E-value=10 Score=36.12 Aligned_cols=44 Identities=18% Similarity=0.052 Sum_probs=30.5
Q ss_pred hhHHc--CCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC
Q 021161 32 IDEEF--NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (316)
Q Consensus 32 Id~~f--~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~ 89 (316)
+-+++ ++.-.++||||||||+|--...+..+. ...++..|.+.+
T Consensus 105 l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~--------------~~~~~fqD~na~ 150 (282)
T KOG2920|consen 105 LKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKG--------------AVSVHFQDFNAE 150 (282)
T ss_pred HHHHhhhheEecCceeEecCCcccccchhhhhhc--------------cceeeeEecchh
Confidence 44454 555678999999999998776665542 256666776664
No 464
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.19 E-value=1.2e+02 Score=26.81 Aligned_cols=113 Identities=15% Similarity=0.160 Sum_probs=61.0
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-------C---C-CCcEEEecCccChhhHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------P---I-EGVIQVQGDITNARTAEV 110 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-------~---i-~gV~~i~gDIt~~~t~~~ 110 (316)
+.+||=.|+ .|+..+.+++++.. .+.+|+.+...... . . ..+..+..|+++...+..
T Consensus 6 ~~~vlitGa-sg~iG~~l~~~l~~-----------~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 73 (252)
T PRK06077 6 DKVVVVTGS-GRGIGRAIAVRLAK-----------EGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCET 73 (252)
T ss_pred CcEEEEeCC-CChHHHHHHHHHHH-----------CCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHH
Confidence 467887774 66777777777641 23566554332211 0 1 135577899999876555
Q ss_pred HHhhcC--CccccEEEeCCCCCCC-CCCCccHH-----HHHHH--HHHHHHHHHHcccCCcEEEEE
Q 021161 111 VIRHFD--GCKADLVVCDGAPDVT-GLHDMDEF-----VQSQL--ILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDgapdvt-G~~~~de~-----~~~~L--~~aaL~~a~~vLkpGG~fV~K 166 (316)
+.+... -..+|.|+...+.... ...+.+.. .+..+ ....++.+...++.+|.||.-
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 139 (252)
T PRK06077 74 LAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNI 139 (252)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEE
Confidence 443321 1468999998653111 11222211 11111 133345556666778888763
No 465
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=60.67 E-value=28 Score=33.93 Aligned_cols=91 Identities=15% Similarity=0.071 Sum_probs=50.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----CCCCcEEEecCccChhhHHHHHhh
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----~i~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
+++.+||-.|+ |+..+.+.+.... .+.+|++++...-. .--|+..+- |..+. ..+.+.
T Consensus 177 ~~g~~VlV~G~--G~vG~~avq~Ak~-----------~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i-~~~~~---~~v~~~ 239 (375)
T PLN02178 177 ESGKRLGVNGL--GGLGHIAVKIGKA-----------FGLRVTVISRSSEKEREAIDRLGADSFL-VTTDS---QKMKEA 239 (375)
T ss_pred CCCCEEEEEcc--cHHHHHHHHHHHH-----------cCCeEEEEeCChHHhHHHHHhCCCcEEE-cCcCH---HHHHHh
Confidence 57889998876 5666655433210 13578888866421 112443221 22221 223333
Q ss_pred cCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 115 ~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
.. .+|+|+- ++|.. .++..+..+|++||+++.-
T Consensus 240 ~~--~~D~vid-----~~G~~------------~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 240 VG--TMDFIID-----TVSAE------------HALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred hC--CCcEEEE-----CCCcH------------HHHHHHHHhhcCCCEEEEE
Confidence 32 5898883 34421 2356778899999999863
No 466
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.64 E-value=87 Score=28.00 Aligned_cols=75 Identities=9% Similarity=0.090 Sum_probs=47.9
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---C--CCCcEEEecCccChhhHHHHHhhcC
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---P--IEGVIQVQGDITNARTAEVVIRHFD 116 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---~--i~gV~~i~gDIt~~~t~~~I~~~~~ 116 (316)
++++|=.|++ |+....+++++.. .+.+|+.++..... . -.++.+++.|+++...+..+.+...
T Consensus 7 ~k~~lItGas-~gIG~~~a~~l~~-----------~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (255)
T PRK06463 7 GKVALITGGT-RGIGRAIAEAFLR-----------EGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVE 74 (255)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHH-----------CCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHH
Confidence 4677777765 6777788877741 24577766543211 1 1267889999999876665544321
Q ss_pred --CccccEEEeCCC
Q 021161 117 --GCKADLVVCDGA 128 (316)
Q Consensus 117 --~~~~DlVvsDga 128 (316)
.++.|.|+...+
T Consensus 75 ~~~~~id~li~~ag 88 (255)
T PRK06463 75 KEFGRVDVLVNNAG 88 (255)
T ss_pred HHcCCCCEEEECCC
Confidence 146999998764
No 467
>PRK06484 short chain dehydrogenase; Validated
Probab=60.56 E-value=97 Score=31.13 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=48.8
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC-CCcEEEecCccChhhHHHHHhh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i-~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
++++|=.|+ .|+.-..+++.+.. .+.+|+.++.++.. .+ ..+..++.|+++.+..+.+.+.
T Consensus 269 ~k~~lItGa-s~gIG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 336 (520)
T PRK06484 269 PRVVAITGG-ARGIGRAVADRFAA-----------AGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQ 336 (520)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHH
Confidence 456666665 56678888887742 34689988876521 12 2356688999998766655443
Q ss_pred cC--CccccEEEeCCC
Q 021161 115 FD--GCKADLVVCDGA 128 (316)
Q Consensus 115 ~~--~~~~DlVvsDga 128 (316)
.. .+++|++|.+.+
T Consensus 337 ~~~~~g~id~li~nAg 352 (520)
T PRK06484 337 IQARWGRLDVLVNNAG 352 (520)
T ss_pred HHHHcCCCCEEEECCC
Confidence 21 147999998864
No 468
>PRK05876 short chain dehydrogenase; Provisional
Probab=60.04 E-value=76 Score=29.14 Aligned_cols=76 Identities=12% Similarity=-0.010 Sum_probs=50.4
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC----CCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i----~gV~~i~gDIt~~~t~~~I 111 (316)
++++|=.|++ |+....+++++.. .+.+|+.+|..+.. .+ ..+.+++.|+++...+..+
T Consensus 6 ~k~vlVTGas-~gIG~ala~~La~-----------~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~ 73 (275)
T PRK05876 6 GRGAVITGGA-SGIGLATGTEFAR-----------RGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHL 73 (275)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence 4678877765 6778888888742 34688888876421 11 1367789999998876655
Q ss_pred Hhhc--CCccccEEEeCCCC
Q 021161 112 IRHF--DGCKADLVVCDGAP 129 (316)
Q Consensus 112 ~~~~--~~~~~DlVvsDgap 129 (316)
.+.. ..++.|+|+.+.+.
T Consensus 74 ~~~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 74 ADEAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHHHHHcCCCCEEEECCCc
Confidence 4432 11468999998653
No 469
>PRK07109 short chain dehydrogenase; Provisional
Probab=59.95 E-value=1.1e+02 Score=29.12 Aligned_cols=76 Identities=14% Similarity=0.072 Sum_probs=50.1
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC----CCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i----~gV~~i~gDIt~~~t~~~I 111 (316)
+++||=.| |+|+....+++.+.. .+.+|+.++.++.. .+ ..+..+++|+++...++.+
T Consensus 8 ~k~vlITG-as~gIG~~la~~la~-----------~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~ 75 (334)
T PRK07109 8 RQVVVITG-ASAGVGRATARAFAR-----------RGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAA 75 (334)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHH
Confidence 35666666 567788888887741 34688888876521 01 2467789999998876655
Q ss_pred HhhcC--CccccEEEeCCCC
Q 021161 112 IRHFD--GCKADLVVCDGAP 129 (316)
Q Consensus 112 ~~~~~--~~~~DlVvsDgap 129 (316)
.+... -+++|+||.+.+.
T Consensus 76 ~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 76 ADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHCCCCCEEEECCCc
Confidence 44321 1479999998653
No 470
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.87 E-value=1.1e+02 Score=26.95 Aligned_cols=75 Identities=12% Similarity=0.053 Sum_probs=46.6
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeC-CCCC------C----CCCcEEEecCccChhhHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDL-QPMA------P----IEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl-~~~~------~----i~gV~~i~gDIt~~~t~~~ 110 (316)
+++||=.|+ +|+....+++++.. .+.+|+.+.. .... . -.++.++.+|+++...+..
T Consensus 4 ~~~vlItGa-~g~iG~~~a~~l~~-----------~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (250)
T PRK08063 4 GKVALVTGS-SRGIGKAIALRLAE-----------EGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKE 71 (250)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence 457777776 58888888888742 2456665432 2210 0 1246788999999876555
Q ss_pred HHhhcC--CccccEEEeCCC
Q 021161 111 VIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 111 I~~~~~--~~~~DlVvsDga 128 (316)
+.+... .+..|+|++..+
T Consensus 72 ~~~~~~~~~~~id~vi~~ag 91 (250)
T PRK08063 72 MFAQIDEEFGRLDVFVNNAA 91 (250)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 443221 136899999864
No 471
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=59.77 E-value=1.2e+02 Score=30.46 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=50.2
Q ss_pred CCCCeEEEECCCCCHHHHH--HHHHhCCCCCCCCCCCCCCCCEEEEEeCCC--CC------------------CCCC--c
Q 021161 40 EGVKRVVDLCAAPGSWSQV--LSRKLYLPAKLSPDSREGDLPLIVAIDLQP--MA------------------PIEG--V 95 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~--La~~l~~~~~~~~~~~~~~~~~IvaVDl~~--~~------------------~i~g--V 95 (316)
.+++++|=.|++.| ++.. +++.+. .++.+++++... .. .-.| +
T Consensus 39 ~ggK~aLVTGaSsG-IGlA~~IA~al~------------~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a 105 (398)
T PRK13656 39 NGPKKVLVIGASSG-YGLASRIAAAFG------------AGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYA 105 (398)
T ss_pred CCCCEEEEECCCch-HhHHHHHHHHHH------------cCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCce
Confidence 56789999998875 5555 666662 357788887532 10 0113 4
Q ss_pred EEEecCccChhhHHHHHhhcC--CccccEEEeCCC
Q 021161 96 IQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 96 ~~i~gDIt~~~t~~~I~~~~~--~~~~DlVvsDga 128 (316)
..+++|+++.+..+++++.+. -+++|++|.+.+
T Consensus 106 ~~i~~DVss~E~v~~lie~I~e~~G~IDiLVnSaA 140 (398)
T PRK13656 106 KSINGDAFSDEIKQKVIELIKQDLGQVDLVVYSLA 140 (398)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 568999999887665554332 147999999865
No 472
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=59.64 E-value=1.4e+02 Score=27.20 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=49.1
Q ss_pred EEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC---CCCcEEEecCccChhhHHHHHhhcCCcccc
Q 021161 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---IEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (316)
Q Consensus 45 VLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~---i~gV~~i~gDIt~~~t~~~I~~~~~~~~~D 121 (316)
||=.|+ +|-.-.+|++++.. .+..|+++|...... ..++.++.+|+++......... +.. |
T Consensus 3 ILVtG~-tGfiG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~-d 66 (314)
T COG0451 3 ILVTGG-AGFIGSHLVERLLA-----------AGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAK---GVP-D 66 (314)
T ss_pred EEEEcC-cccHHHHHHHHHHh-----------CCCeEEEEeCCCccccccccccceeeecccchHHHHHHHh---cCC-C
Confidence 666676 89999999998852 257999999877542 2478899999999755443322 112 9
Q ss_pred EEEeCCCCC
Q 021161 122 LVVCDGAPD 130 (316)
Q Consensus 122 lVvsDgapd 130 (316)
.|+..++..
T Consensus 67 ~vih~aa~~ 75 (314)
T COG0451 67 AVIHLAAQS 75 (314)
T ss_pred EEEEccccC
Confidence 999887643
No 473
>PRK08643 acetoin reductase; Validated
Probab=59.58 E-value=1.3e+02 Score=26.77 Aligned_cols=74 Identities=15% Similarity=0.118 Sum_probs=48.8
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------C----CCCcEEEecCccChhhHHHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----IEGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~----i~gV~~i~gDIt~~~t~~~I~ 112 (316)
+++|=.| |.|+....+++.+.. .+.+|+.++.++.. . -.++.++++|+++...+..+.
T Consensus 3 k~~lItG-as~giG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 70 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVE-----------DGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAV 70 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 4555445 667788888887742 34689999876521 1 135678899999988665554
Q ss_pred hhcC--CccccEEEeCCC
Q 021161 113 RHFD--GCKADLVVCDGA 128 (316)
Q Consensus 113 ~~~~--~~~~DlVvsDga 128 (316)
+... .+++|.|++..+
T Consensus 71 ~~~~~~~~~id~vi~~ag 88 (256)
T PRK08643 71 RQVVDTFGDLNVVVNNAG 88 (256)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 4321 146999999864
No 474
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=59.48 E-value=1.2e+02 Score=28.34 Aligned_cols=70 Identities=19% Similarity=0.103 Sum_probs=44.8
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------C--CCCcEEEecCccChhhHHHHH
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P--IEGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~--i~gV~~i~gDIt~~~t~~~I~ 112 (316)
+||=.| |+|....++++++.. .+.+|++++...-. . -.++.++.+|+++......++
T Consensus 2 ~vlVtG-atG~iG~~l~~~L~~-----------~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 69 (338)
T PRK10675 2 RVLVTG-GSGYIGSHTCVQLLQ-----------NGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEIL 69 (338)
T ss_pred eEEEEC-CCChHHHHHHHHHHH-----------CCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHH
Confidence 455444 568888888887741 24678888753211 0 124677899999987655543
Q ss_pred hhcCCccccEEEeCCC
Q 021161 113 RHFDGCKADLVVCDGA 128 (316)
Q Consensus 113 ~~~~~~~~DlVvsDga 128 (316)
....+|.|+...+
T Consensus 70 ---~~~~~d~vvh~a~ 82 (338)
T PRK10675 70 ---HDHAIDTVIHFAG 82 (338)
T ss_pred ---hcCCCCEEEECCc
Confidence 2346999998754
No 475
>PRK08226 short chain dehydrogenase; Provisional
Probab=59.44 E-value=1.3e+02 Score=26.84 Aligned_cols=76 Identities=13% Similarity=0.147 Sum_probs=51.0
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----C----CCCcEEEecCccChhhHHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----P----IEGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----~----i~gV~~i~gDIt~~~t~~~I~ 112 (316)
+.++|=.|+ .|+....+++++.. .+.+|+.++...-. . -..+..+++|+++...+..+.
T Consensus 6 ~~~~lItG~-s~giG~~la~~l~~-----------~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 73 (263)
T PRK08226 6 GKTALITGA-LQGIGEGIARVFAR-----------HGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAI 73 (263)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHH-----------CCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHH
Confidence 467887776 57788888887742 34689988876521 0 124678899999987766554
Q ss_pred hhcC--CccccEEEeCCCC
Q 021161 113 RHFD--GCKADLVVCDGAP 129 (316)
Q Consensus 113 ~~~~--~~~~DlVvsDgap 129 (316)
+.+. ..+.|.|+++.+.
T Consensus 74 ~~~~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 74 KRAKEKEGRIDILVNNAGV 92 (263)
T ss_pred HHHHHHcCCCCEEEECCCc
Confidence 4321 1468999998653
No 476
>PLN02780 ketoreductase/ oxidoreductase
Probab=59.29 E-value=1.4e+02 Score=28.40 Aligned_cols=76 Identities=8% Similarity=0.030 Sum_probs=49.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------C----CC--CcEEEecCccC--hh
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----IE--GVIQVQGDITN--AR 106 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~----i~--gV~~i~gDIt~--~~ 106 (316)
.|..+|=.|| +|+....+++++.. .+.+|+.++.++.. . .+ .+..+..|+++ .+
T Consensus 52 ~g~~~lITGA-s~GIG~alA~~La~-----------~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~ 119 (320)
T PLN02780 52 YGSWALVTGP-TDGIGKGFAFQLAR-----------KGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDE 119 (320)
T ss_pred cCCEEEEeCC-CcHHHHHHHHHHHH-----------CCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHH
Confidence 3678887775 66778888887742 24688888877631 1 12 35567788884 34
Q ss_pred hHHHHHhhcCCccccEEEeCCC
Q 021161 107 TAEVVIRHFDGCKADLVVCDGA 128 (316)
Q Consensus 107 t~~~I~~~~~~~~~DlVvsDga 128 (316)
..+.+.+.+.+...|+++.+.+
T Consensus 120 ~~~~l~~~~~~~didilVnnAG 141 (320)
T PLN02780 120 GVKRIKETIEGLDVGVLINNVG 141 (320)
T ss_pred HHHHHHHHhcCCCccEEEEecC
Confidence 4555666665445778888864
No 477
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=58.86 E-value=14 Score=33.02 Aligned_cols=107 Identities=16% Similarity=0.233 Sum_probs=64.2
Q ss_pred CCC-CCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------CCCCcEEEecCccChhhHHHHHhh----
Q 021161 49 CAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVVIRH---- 114 (316)
Q Consensus 49 cag-PG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~i~gV~~i~gDIt~~~t~~~I~~~---- 114 (316)
|+| .+++...+++++.. .+.+|+.++.+... ...+..+++.|+++.+.++.+.+.
T Consensus 1 g~~~s~GiG~aia~~l~~-----------~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 69 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAE-----------EGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVER 69 (241)
T ss_dssp STSSTSHHHHHHHHHHHH-----------TTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHH-----------CCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhh
Confidence 344 57788888888742 35799999998752 112456799999998876665443
Q ss_pred cCCccccEEEeCCCCCC-----CCCCCcc--HHH---HHHH--HHHHHHHHHHcccCCcEEEEEE
Q 021161 115 FDGCKADLVVCDGAPDV-----TGLHDMD--EFV---QSQL--ILAGLTVVTHVLKEGGKFIAKI 167 (316)
Q Consensus 115 ~~~~~~DlVvsDgapdv-----tG~~~~d--e~~---~~~L--~~aaL~~a~~vLkpGG~fV~Ki 167 (316)
+. +++|.+|++.+... ..+.+.+ ++. ...+ .....+.+...++++|++|.-.
T Consensus 70 ~~-g~iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~is 133 (241)
T PF13561_consen 70 FG-GRIDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINIS 133 (241)
T ss_dssp HC-SSESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cC-CCeEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccc
Confidence 32 57998887743221 1222222 111 1111 1334455556888999988653
No 478
>PRK06125 short chain dehydrogenase; Provisional
Probab=58.72 E-value=56 Score=29.35 Aligned_cols=73 Identities=14% Similarity=0.036 Sum_probs=51.5
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC---------C--CCCcEEEecCccChhhHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P--IEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~---------~--i~gV~~i~gDIt~~~t~~~ 110 (316)
++++|=.|+ .|+....+++.+.. .+.+|++++.++.. . -..+..++.|+++......
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~ 74 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAA-----------EGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQ 74 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHH
Confidence 467777775 67788888887742 24689999876531 0 1246788999999887777
Q ss_pred HHhhcCCccccEEEeCCC
Q 021161 111 VIRHFDGCKADLVVCDGA 128 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDga 128 (316)
+.+.+ +++|.++....
T Consensus 75 ~~~~~--g~id~lv~~ag 90 (259)
T PRK06125 75 LAAEA--GDIDILVNNAG 90 (259)
T ss_pred HHHHh--CCCCEEEECCC
Confidence 66654 47999998854
No 479
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=58.65 E-value=79 Score=30.97 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=52.7
Q ss_pred cCCCCeEEEECCCCCHHHHH---HHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----CC-------CCcEEEecCcc
Q 021161 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PI-------EGVIQVQGDIT 103 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~---La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----~i-------~gV~~i~gDIt 103 (316)
++++.+|+=+|++ |+..+. +++.++. ...+|+++|.++.. .+ .|.....-|..
T Consensus 173 ~~~g~~VlV~G~~-G~vG~~aiq~ak~~G~-----------g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~ 240 (410)
T cd08238 173 IKPGGNTAILGGA-GPMGLMAIDYAIHGPI-----------GPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPA 240 (410)
T ss_pred CCCCCEEEEEeCC-CHHHHHHHHHHHhccc-----------CCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCC
Confidence 3577888877632 333333 4444320 12379999987631 11 14431111222
Q ss_pred C-hhhHHHHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 104 N-ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 104 ~-~~t~~~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
+ ....+.+.+...+..+|+|+.. +|. -..+..+.++|+++|.+++-
T Consensus 241 ~~~~~~~~v~~~t~g~g~D~vid~-----~g~------------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 241 TIDDLHATLMELTGGQGFDDVFVF-----VPV------------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred ccccHHHHHHHHhCCCCCCEEEEc-----CCC------------HHHHHHHHHHhccCCeEEEE
Confidence 2 2223334444455679988853 221 12356778899999988763
No 480
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=58.23 E-value=1.3e+02 Score=26.46 Aligned_cols=74 Identities=16% Similarity=0.065 Sum_probs=48.8
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----------CCCCcEEEecCccChhhHHHHHh
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----------~i~gV~~i~gDIt~~~t~~~I~~ 113 (316)
+||=.| |+|+....+++.+.. .+.+|++++..+.. .-..+..+++|+++...+..+.+
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 70 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAA-----------AGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIA 70 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 455555 668888898888741 24689999887521 01247788999999875554433
Q ss_pred hcC--CccccEEEeCCCC
Q 021161 114 HFD--GCKADLVVCDGAP 129 (316)
Q Consensus 114 ~~~--~~~~DlVvsDgap 129 (316)
... ....|.|++..+.
T Consensus 71 ~~~~~~~~~d~vi~~a~~ 88 (255)
T TIGR01963 71 AAAAEFGGLDILVNNAGI 88 (255)
T ss_pred HHHHhcCCCCEEEECCCC
Confidence 221 2458999998653
No 481
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=58.23 E-value=78 Score=28.71 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=48.6
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC----CCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i----~gV~~i~gDIt~~~t~~~I 111 (316)
++++|=.|++ |+....+++++.. .+.+|+.++.++.. .+ ..+.++++|+++......+
T Consensus 10 ~k~vlVtGas-~giG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~ 77 (278)
T PRK08277 10 GKVAVITGGG-GVLGGAMAKELAR-----------AGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQA 77 (278)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 4667777765 5667777777641 34688888876521 01 2367889999998766554
Q ss_pred HhhcC--CccccEEEeCCC
Q 021161 112 IRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 112 ~~~~~--~~~~DlVvsDga 128 (316)
.+... -+++|+|++..+
T Consensus 78 ~~~~~~~~g~id~li~~ag 96 (278)
T PRK08277 78 RQQILEDFGPCDILINGAG 96 (278)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 43321 147999999864
No 482
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=58.03 E-value=67 Score=30.03 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=51.6
Q ss_pred cCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-C-C--CCcEEEecCccChhhHHHHHhh
Q 021161 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-P-I--EGVIQVQGDITNARTAEVVIRH 114 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-~-i--~gV~~i~gDIt~~~t~~~I~~~ 114 (316)
+.++.+||-.|+ |+..+.+.+.... .+.+|+++.-++.. . + .|...+- |..+......+...
T Consensus 157 l~~g~~vLI~g~--g~vG~~a~~lA~~-----------~g~~v~~~~~s~~~~~~~~~~g~~~v~-~~~~~~~~~~l~~~ 222 (337)
T cd08261 157 VTAGDTVLVVGA--GPIGLGVIQVAKA-----------RGARVIVVDIDDERLEFARELGADDTI-NVGDEDVAARLREL 222 (337)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCeEEEECCCHHHHHHHHHhCCCEEe-cCcccCHHHHHHHH
Confidence 467889999964 5655555433220 13677777544321 0 0 1221111 22222233445544
Q ss_pred cCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 115 ~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
..+..+|+|+... |. ...+..+.+.|+++|+++.
T Consensus 223 ~~~~~vd~vld~~-----g~------------~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 223 TDGEGADVVIDAT-----GN------------PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred hCCCCCCEEEECC-----CC------------HHHHHHHHHHHhcCCEEEE
Confidence 5556799999632 11 0224567889999999986
No 483
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.84 E-value=45 Score=29.68 Aligned_cols=73 Identities=12% Similarity=-0.005 Sum_probs=49.5
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-----------CCCcEEEecCccChhhHHHHH
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAEVVI 112 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-----------i~gV~~i~gDIt~~~t~~~I~ 112 (316)
.||=.| |.|++...+++.+.. .+.+|+.++...... -..+.++++|+++...+..+.
T Consensus 4 ~vlItG-~sg~iG~~la~~L~~-----------~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (256)
T PRK12745 4 VALVTG-GRRGIGLGIARALAA-----------AGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAML 71 (256)
T ss_pred EEEEeC-CCchHHHHHHHHHHH-----------CCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 466556 688899999888742 246899988654210 125788999999987665554
Q ss_pred hhcC--CccccEEEeCCC
Q 021161 113 RHFD--GCKADLVVCDGA 128 (316)
Q Consensus 113 ~~~~--~~~~DlVvsDga 128 (316)
+... -+.+|.|+...+
T Consensus 72 ~~~~~~~~~id~vi~~ag 89 (256)
T PRK12745 72 DAAQAAWGRIDCLVNNAG 89 (256)
T ss_pred HHHHHhcCCCCEEEECCc
Confidence 4321 136999999854
No 484
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=57.82 E-value=1.1e+02 Score=26.71 Aligned_cols=74 Identities=18% Similarity=0.147 Sum_probs=46.8
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----------CCCCcEEEecCccChhhHHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----------~i~gV~~i~gDIt~~~t~~~I 111 (316)
++||=.| |+|+..+.+++++.. .+.+|+.+...+.. .-..+..+.+|+++...+..+
T Consensus 6 ~~vlItG-~sg~iG~~l~~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (248)
T PRK05557 6 KVALVTG-ASRGIGRAIAERLAA-----------QGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERA 73 (248)
T ss_pred CEEEEEC-CCchHHHHHHHHHHH-----------CCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 4566666 578899999888741 23566555444321 113467888999998866655
Q ss_pred HhhcC--CccccEEEeCCC
Q 021161 112 IRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 112 ~~~~~--~~~~DlVvsDga 128 (316)
.+... ...+|.|++..+
T Consensus 74 ~~~~~~~~~~id~vi~~ag 92 (248)
T PRK05557 74 VDEAKAEFGGVDILVNNAG 92 (248)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 44321 136899998764
No 485
>PRK05855 short chain dehydrogenase; Validated
Probab=57.81 E-value=54 Score=32.95 Aligned_cols=76 Identities=20% Similarity=0.102 Sum_probs=52.0
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC----CCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i----~gV~~i~gDIt~~~t~~~I 111 (316)
+.++|=.|+ +|+....+++++.. .+.+|+.++.+.-. .+ .++.++++|+++......+
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~ 382 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAR-----------EGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAF 382 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 456776665 78888888888752 34678888877521 01 2467889999998876665
Q ss_pred HhhcC--CccccEEEeCCCC
Q 021161 112 IRHFD--GCKADLVVCDGAP 129 (316)
Q Consensus 112 ~~~~~--~~~~DlVvsDgap 129 (316)
.+.+. .+.+|+|+.+.+.
T Consensus 383 ~~~~~~~~g~id~lv~~Ag~ 402 (582)
T PRK05855 383 AEWVRAEHGVPDIVVNNAGI 402 (582)
T ss_pred HHHHHHhcCCCcEEEECCcc
Confidence 54331 2469999998754
No 486
>PRK06139 short chain dehydrogenase; Provisional
Probab=57.50 E-value=61 Score=31.04 Aligned_cols=75 Identities=19% Similarity=0.107 Sum_probs=49.4
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC----CCcEEEecCccChhhHHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i----~gV~~i~gDIt~~~t~~~I 111 (316)
+++||=.|+ +|+....+++.+.. .+.+|+.++.++.. .+ ..+.++..|+++.+.++.+
T Consensus 7 ~k~vlITGA-s~GIG~aia~~la~-----------~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~ 74 (330)
T PRK06139 7 GAVVVITGA-SSGIGQATAEAFAR-----------RGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKAL 74 (330)
T ss_pred CCEEEEcCC-CCHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHH
Confidence 456665555 67788888887742 34688888876521 01 2356788999998776665
Q ss_pred HhhcC--CccccEEEeCCC
Q 021161 112 IRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 112 ~~~~~--~~~~DlVvsDga 128 (316)
.+... .+.+|++|.+..
T Consensus 75 ~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 75 ATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHHHhcCCCCEEEECCC
Confidence 54321 146999999864
No 487
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=57.31 E-value=5.9 Score=36.28 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=26.8
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCC
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~ 88 (316)
-.++|+|||-||+...|+-..+ +.-|+|.+|.-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fP-------------dtLiLGmEIR~ 94 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFP-------------DTLILGMEIRD 94 (249)
T ss_pred ceEEeeccCccchhhhccccCc-------------cceeeeehhhH
Confidence 4799999999999988887763 56788887764
No 488
>PRK05872 short chain dehydrogenase; Provisional
Probab=56.87 E-value=1.6e+02 Score=27.16 Aligned_cols=77 Identities=22% Similarity=0.199 Sum_probs=49.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------CC---CCcEEEecCccChhhHHHH
Q 021161 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVV 111 (316)
Q Consensus 41 ~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------~i---~gV~~i~gDIt~~~t~~~I 111 (316)
.+.+||=.|++ |+....+++.+.. .+.+|+.++.++.. .+ ..+..++.|+++...+..+
T Consensus 8 ~gk~vlItGas-~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~ 75 (296)
T PRK05872 8 AGKVVVVTGAA-RGIGAELARRLHA-----------RGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAA 75 (296)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHH
Confidence 35678877754 6677788877741 34688888876521 11 1245566999998766655
Q ss_pred HhhcC--CccccEEEeCCCC
Q 021161 112 IRHFD--GCKADLVVCDGAP 129 (316)
Q Consensus 112 ~~~~~--~~~~DlVvsDgap 129 (316)
.+.+. .+++|+||++.+.
T Consensus 76 ~~~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 76 AEEAVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHHHHcCCCCEEEECCCc
Confidence 44321 1479999998653
No 489
>PRK12828 short chain dehydrogenase; Provisional
Probab=56.86 E-value=39 Score=29.50 Aligned_cols=75 Identities=13% Similarity=0.035 Sum_probs=50.6
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CCCCcEEEecCccChhhHHHHHh
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVIR 113 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i~gV~~i~gDIt~~~t~~~I~~ 113 (316)
+++||=.|+ +|+....+++.+.. .+.+|++++.++.. .-.++..+.+|+++...+..+.+
T Consensus 7 ~k~vlItGa-tg~iG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (239)
T PRK12828 7 GKVVAITGG-FGGLGRATAAWLAA-----------RGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVD 74 (239)
T ss_pred CCEEEEECC-CCcHhHHHHHHHHH-----------CCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHH
Confidence 567777875 48888888887741 24689999886531 12357778899999876655444
Q ss_pred hcC--CccccEEEeCCC
Q 021161 114 HFD--GCKADLVVCDGA 128 (316)
Q Consensus 114 ~~~--~~~~DlVvsDga 128 (316)
... -.++|.|+...+
T Consensus 75 ~~~~~~~~~d~vi~~ag 91 (239)
T PRK12828 75 EVNRQFGRLDALVNIAG 91 (239)
T ss_pred HHHHHhCCcCEEEECCc
Confidence 321 137999998754
No 490
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=56.75 E-value=78 Score=29.76 Aligned_cols=92 Identities=15% Similarity=0.044 Sum_probs=50.5
Q ss_pred cCCCCeEEEECCCCCHHHHHH---HHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----CCCCcEEEecCccC-hhhHH
Q 021161 39 FEGVKRVVDLCAAPGSWSQVL---SRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITN-ARTAE 109 (316)
Q Consensus 39 ~~~~~rVLDLcagPG~wSq~L---a~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----~i~gV~~i~gDIt~-~~t~~ 109 (316)
+++|.+||=.|+ .|+..+.+ ++.+ +.+|++++.++.. ..-|+..+- |-.+ ....+
T Consensus 149 ~~~g~~VlI~Ga-~G~vG~~aiqlAk~~--------------G~~Vi~~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~ 212 (338)
T cd08295 149 PKKGETVFVSAA-SGAVGQLVGQLAKLK--------------GCYVVGSAGSDEKVDLLKNKLGFDDAF-NYKEEPDLDA 212 (338)
T ss_pred CCCCCEEEEecC-ccHHHHHHHHHHHHc--------------CCEEEEEeCCHHHHHHHHHhcCCceeE-EcCCcccHHH
Confidence 578889997775 35555544 4443 3578887765421 102432111 1111 12233
Q ss_pred HHHhhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEE
Q 021161 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (316)
Q Consensus 110 ~I~~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~ 165 (316)
.+.+... ..+|+|+- +.|- ..+..+.++|+++|+++.
T Consensus 213 ~i~~~~~-~gvd~v~d-----~~g~-------------~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 213 ALKRYFP-NGIDIYFD-----NVGG-------------KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred HHHHhCC-CCcEEEEE-----CCCH-------------HHHHHHHHHhccCcEEEE
Confidence 3444333 57999983 2331 124567889999999986
No 491
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=56.74 E-value=45 Score=29.06 Aligned_cols=129 Identities=19% Similarity=0.135 Sum_probs=67.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-CCCCCcEEEecCccChhhHHHHHhhcCCc
Q 021161 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-APIEGVIQVQGDITNARTAEVVIRHFDGC 118 (316)
Q Consensus 40 ~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-~~i~gV~~i~gDIt~~~t~~~I~~~~~~~ 118 (316)
.++.+|+=|||=+-- ..+.+.. ....+++-.|...- ....+=.+..=|...+.. +.+.+ .+
T Consensus 24 ~~~~~iaclstPsl~--~~l~~~~------------~~~~~~~Lle~D~RF~~~~~~~F~fyD~~~p~~---~~~~l-~~ 85 (162)
T PF10237_consen 24 LDDTRIACLSTPSLY--EALKKES------------KPRIQSFLLEYDRRFEQFGGDEFVFYDYNEPEE---LPEEL-KG 85 (162)
T ss_pred CCCCEEEEEeCcHHH--HHHHhhc------------CCCccEEEEeecchHHhcCCcceEECCCCChhh---hhhhc-CC
Confidence 356789888864332 2222211 13456777777762 223322466667776653 44455 46
Q ss_pred cccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCCHHHHHHHHHhcCCceEEecCCCCCCC
Q 021161 119 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNS 198 (316)
Q Consensus 119 ~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~~~~l~~~l~~~F~~V~~~KP~sSR~~ 198 (316)
++|+||+|.++ +.+..+ ......+..++|+++.++.. .|..+..++..+- -+ +..-++|...++-
T Consensus 86 ~~d~vv~DPPF-------l~~ec~----~k~a~ti~~L~k~~~kii~~--Tg~~~~~~~~~ll-~~-~~~~f~p~h~~~L 150 (162)
T PF10237_consen 86 KFDVVVIDPPF-------LSEECL----TKTAETIRLLLKPGGKIILC--TGEEMEELIKKLL-GL-RMCDFQPEHPNNL 150 (162)
T ss_pred CceEEEECCCC-------CCHHHH----HHHHHHHHHHhCccceEEEe--cHHHHHHHHHHHh-Ce-eEEeEEeccccCC
Confidence 99999999765 222222 22233444555777777762 3433333332222 12 3445578777754
Q ss_pred Ccc
Q 021161 199 SIE 201 (316)
Q Consensus 199 S~E 201 (316)
+-|
T Consensus 151 ~n~ 153 (162)
T PF10237_consen 151 SNE 153 (162)
T ss_pred cce
Confidence 443
No 492
>PLN02427 UDP-apiose/xylose synthase
Probab=56.63 E-value=1.2e+02 Score=29.18 Aligned_cols=71 Identities=18% Similarity=0.102 Sum_probs=48.7
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC-----C------CCCcEEEecCccChhhHHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----P------IEGVIQVQGDITNARTAEV 110 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~-----~------i~gV~~i~gDIt~~~t~~~ 110 (316)
.++||=.| |+|-...+|++++-. ....+|+++|..... + ..+++++.+|+++...+..
T Consensus 14 ~~~VlVTG-gtGfIGs~lv~~L~~----------~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~ 82 (386)
T PLN02427 14 PLTICMIG-AGGFIGSHLCEKLMT----------ETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEG 82 (386)
T ss_pred CcEEEEEC-CcchHHHHHHHHHHh----------cCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHH
Confidence 36788555 789999999988741 113589999965421 0 1368999999999776544
Q ss_pred HHhhcCCccccEEEeCCC
Q 021161 111 VIRHFDGCKADLVVCDGA 128 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDga 128 (316)
+ +. .+|.|+.-++
T Consensus 83 ~---~~--~~d~ViHlAa 95 (386)
T PLN02427 83 L---IK--MADLTINLAA 95 (386)
T ss_pred H---hh--cCCEEEEccc
Confidence 3 32 3899987665
No 493
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=56.41 E-value=13 Score=34.84 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=27.8
Q ss_pred hHHcCCcCCCCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCC
Q 021161 33 DEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (316)
Q Consensus 33 d~~f~~~~~~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~ 88 (316)
++.|..+.+..+|+|||||-=-++...... .++..++|.|+..
T Consensus 97 ~~if~~~~~p~sVlDigCGlNPlalp~~~~-------------~~~a~Y~a~DID~ 139 (251)
T PF07091_consen 97 DEIFGRIPPPDSVLDIGCGLNPLALPWMPE-------------APGATYIAYDIDS 139 (251)
T ss_dssp HHHCCCS---SEEEEET-TTCHHHHHTTTS-------------STT-EEEEEESBH
T ss_pred HHHHhcCCCCchhhhhhccCCceehhhccc-------------CCCcEEEEEeCCH
Confidence 445566666889999999988777655422 1457999999987
No 494
>PLN02650 dihydroflavonol-4-reductase
Probab=56.29 E-value=1e+02 Score=29.24 Aligned_cols=70 Identities=17% Similarity=0.088 Sum_probs=46.2
Q ss_pred CeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC--------CC----CCcEEEecCccChhhHHH
Q 021161 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI----EGVIQVQGDITNARTAEV 110 (316)
Q Consensus 43 ~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~--------~i----~gV~~i~gDIt~~~t~~~ 110 (316)
++||=.| |+|....++++++-. .+.+|++++..+.. .. ..+.++.+|+++...+..
T Consensus 6 k~iLVTG-atGfIGs~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~ 73 (351)
T PLN02650 6 ETVCVTG-ASGFIGSWLVMRLLE-----------RGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDD 73 (351)
T ss_pred CEEEEeC-CcHHHHHHHHHHHHH-----------CCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHH
Confidence 4555444 788889999888741 24578877765421 01 147789999999876555
Q ss_pred HHhhcCCccccEEEeCCCC
Q 021161 111 VIRHFDGCKADLVVCDGAP 129 (316)
Q Consensus 111 I~~~~~~~~~DlVvsDgap 129 (316)
+++ .+|.|+.-+++
T Consensus 74 ~~~-----~~d~ViH~A~~ 87 (351)
T PLN02650 74 AIR-----GCTGVFHVATP 87 (351)
T ss_pred HHh-----CCCEEEEeCCC
Confidence 432 48988887654
No 495
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=56.22 E-value=13 Score=30.90 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=37.1
Q ss_pred cEEEecCccChhhHHHHHhhcCCccccEEEeCC-CCCCCC-CCCccHHHHHHHHHHHHHHHHHcccCCcEEEEEEccCCC
Q 021161 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDG-APDVTG-LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (316)
Q Consensus 95 V~~i~gDIt~~~t~~~I~~~~~~~~~DlVvsDg-apdvtG-~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~~~~ 172 (316)
++...||+.+ .+..+. ..||+|.-|| +|.... +|+ ...+....+++++||+|+. |..
T Consensus 33 L~L~~gDa~~------~l~~l~-~~~Da~ylDgFsP~~nPelWs----------~e~~~~l~~~~~~~~~l~T--ys~-- 91 (124)
T PF05430_consen 33 LTLWFGDARE------MLPQLD-ARFDAWYLDGFSPAKNPELWS----------EELFKKLARLSKPGGTLAT--YSS-- 91 (124)
T ss_dssp EEEEES-HHH------HHHHB--T-EEEEEE-SS-TTTSGGGSS----------HHHHHHHHHHEEEEEEEEE--S----
T ss_pred EEEEEcHHHH------HHHhCc-ccCCEEEecCCCCcCCcccCC----------HHHHHHHHHHhCCCcEEEE--eec--
Confidence 4566788754 233343 6899999998 443211 222 2346777899999998876 332
Q ss_pred HHHHHHHHHhc
Q 021161 173 TSLLYCQLKLF 183 (316)
Q Consensus 173 ~~~l~~~l~~~ 183 (316)
...+...|...
T Consensus 92 a~~Vr~~L~~a 102 (124)
T PF05430_consen 92 AGAVRRALQQA 102 (124)
T ss_dssp BHHHHHHHHHC
T ss_pred hHHHHHHHHHc
Confidence 23455555543
No 496
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.59 E-value=1.5e+02 Score=26.39 Aligned_cols=76 Identities=12% Similarity=0.038 Sum_probs=51.1
Q ss_pred CCeEEEECCCC-CHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCC-----------C---------C-CCCcEEEe
Q 021161 42 VKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------A---------P-IEGVIQVQ 99 (316)
Q Consensus 42 ~~rVLDLcagP-G~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~-----------~---------~-i~gV~~i~ 99 (316)
+..||=.|++. |+....+++++.. .+.+|+.++..+. . . -..+.+++
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~-----------~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAA-----------KGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHME 73 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHH-----------cCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEE
Confidence 46788888774 7899999988742 2468888876621 0 0 12477889
Q ss_pred cCccChhhHHHHHhhcC--CccccEEEeCCC
Q 021161 100 GDITNARTAEVVIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 100 gDIt~~~t~~~I~~~~~--~~~~DlVvsDga 128 (316)
.|+++...+....+... .+++|.|+...+
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~g~id~vi~~ag 104 (256)
T PRK12748 74 IDLSQPYAPNRVFYAVSERLGDPSILINNAA 104 (256)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 99999876555444321 146999998864
No 497
>CHL00194 ycf39 Ycf39; Provisional
Probab=55.36 E-value=42 Score=31.56 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=46.0
Q ss_pred eEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHhhcCCcc
Q 021161 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (316)
Q Consensus 44 rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~~~~~~~ 119 (316)
+|+ +-.|+|-...++.+.+.. .+.+|++++.++.. ...+++++.+|+++...+... +. .
T Consensus 2 kIl-VtGatG~iG~~lv~~Ll~-----------~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a---l~--g 64 (317)
T CHL00194 2 SLL-VIGATGTLGRQIVRQALD-----------EGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPS---FK--G 64 (317)
T ss_pred EEE-EECCCcHHHHHHHHHHHH-----------CCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHH---HC--C
Confidence 344 345889999999888742 24688888876532 135899999999998765443 43 4
Q ss_pred ccEEEeC
Q 021161 120 ADLVVCD 126 (316)
Q Consensus 120 ~DlVvsD 126 (316)
+|.|++-
T Consensus 65 ~d~Vi~~ 71 (317)
T CHL00194 65 VTAIIDA 71 (317)
T ss_pred CCEEEEC
Confidence 7999974
No 498
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.25 E-value=1.1e+02 Score=30.14 Aligned_cols=92 Identities=15% Similarity=0.068 Sum_probs=57.6
Q ss_pred CCCCeEEEECC-CCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCCC-----CCCcEEEecCcc-ChhhHHHHH
Q 021161 40 EGVKRVVDLCA-APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDIT-NARTAEVVI 112 (316)
Q Consensus 40 ~~~~rVLDLca-gPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~~-----i~gV~~i~gDIt-~~~t~~~I~ 112 (316)
.+|++|-=+|+ |=|++..-+++.++ .+|+++|-..-.. .-|..... |.+ +....+.+.
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG--------------~rV~vis~~~~kkeea~~~LGAd~fv-~~~~d~d~~~~~~ 244 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMG--------------MRVTVISTSSKKKEEAIKSLGADVFV-DSTEDPDIMKAIM 244 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhC--------------cEEEEEeCCchhHHHHHHhcCcceeE-EecCCHHHHHHHH
Confidence 48887777765 36888888898885 7999999986321 12322221 334 444445555
Q ss_pred hhcCCccccEEEeCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcccCCcEEEEE
Q 021161 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (316)
Q Consensus 113 ~~~~~~~~DlVvsDgapdvtG~~~~de~~~~~L~~aaL~~a~~vLkpGG~fV~K 166 (316)
+.++ .-+|-|.+= ...++..++.+||++|++|+-
T Consensus 245 ~~~d-g~~~~v~~~-------------------a~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 245 KTTD-GGIDTVSNL-------------------AEHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred Hhhc-Ccceeeeec-------------------cccchHHHHHHhhcCCEEEEE
Confidence 5444 234544421 123466788999999999974
No 499
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=54.93 E-value=1.2e+02 Score=29.13 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=50.4
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC----CCCCcEEEecCccChhhHHHHHhhcCC
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDG 117 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~----~i~gV~~i~gDIt~~~t~~~I~~~~~~ 117 (316)
|..||=+|+|||.....|.+.... -+-..+.+-+|..+.. .+++|+.++ +.++++.++.+...+.
T Consensus 61 g~~VVYiGSApG~HI~~L~~lf~~---------lg~~ikw~LiDp~~h~~~Le~l~nV~Li~-~f~de~~i~~~r~~~~- 129 (300)
T PHA03108 61 GSTIVYIGSAPGTHIRYLRDHFYS---------LGVVIKWMLIDGRKHDPILNGLRDVTLVT-RFVDEAYLRRLKKQLH- 129 (300)
T ss_pred CceEEEecCCCCccHHHHHHHHHh---------cCCCeEEEEECCCcccHhhcCCCcEEeeH-hhcCHHHHHHHHHhcc-
Confidence 569999999999999999887641 0123588999988863 356676655 4666666555555443
Q ss_pred ccccEE-EeCC
Q 021161 118 CKADLV-VCDG 127 (316)
Q Consensus 118 ~~~DlV-vsDg 127 (316)
..|+| |||.
T Consensus 130 -~~~illISDI 139 (300)
T PHA03108 130 -PSKIILISDI 139 (300)
T ss_pred -CCCEEEEEee
Confidence 34555 5664
No 500
>PRK05854 short chain dehydrogenase; Provisional
Probab=54.86 E-value=1.6e+02 Score=27.55 Aligned_cols=75 Identities=15% Similarity=0.093 Sum_probs=50.4
Q ss_pred CCeEEEECCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCEEEEEeCCCCC------------CCCCcEEEecCccChhhHH
Q 021161 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTAE 109 (316)
Q Consensus 42 ~~rVLDLcagPG~wSq~La~~l~~~~~~~~~~~~~~~~~IvaVDl~~~~------------~i~gV~~i~gDIt~~~t~~ 109 (316)
++++|=.|+ +|+.-..+++.+.. .+.+|+.++.+... +-..+.+++.|+++...++
T Consensus 14 gk~~lITGa-s~GIG~~~a~~La~-----------~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~ 81 (313)
T PRK05854 14 GKRAVVTGA-SDGLGLGLARRLAA-----------AGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVA 81 (313)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHH
Confidence 456665555 57788888888742 34688888776421 1124778999999988766
Q ss_pred HHHhhcC--CccccEEEeCCC
Q 021161 110 VVIRHFD--GCKADLVVCDGA 128 (316)
Q Consensus 110 ~I~~~~~--~~~~DlVvsDga 128 (316)
.+.+.+. ..+.|++|++.+
T Consensus 82 ~~~~~~~~~~~~iD~li~nAG 102 (313)
T PRK05854 82 ALGEQLRAEGRPIHLLINNAG 102 (313)
T ss_pred HHHHHHHHhCCCccEEEECCc
Confidence 5554331 247999999864
Done!