Citrus Sinensis ID: 021162

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
MASCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELLDEEAEQFLMHNFIDPDPQRPWLAQRMALRIPYSA
ccccEEEEccccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccccEEEEEcccccEEEEEcccccccccccccEEccccccccEEEEEEcccEEEEccEEEEccccccccEEEEEEcccEEEEEccEEEEccccEEcccccEEEEccEEEEEcEEEEccccEEEEccEEEEEEccEEEEcccccccccEEEEEEccEEEEEcccccEEEccccccccEEEEEccccccccccccccccccccccccEEEEEEccccccccccccccccccccHHHHHccccccEEccccccccccccccccccccc
cccccEEEcccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEcccccccccccccEccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccEEEEccccccccccEEEEEEEEEEccccccccccccccHHcccEEEEEEcccccccccccccccccccccEEEEHEEccccccccccccccccccccHHHHHHccHHHHcccccccccccccccccccccc
MASCVVTVaqdgtgdyrTVQEAidrvplcntrrtlirispgvyrqpvyvpktknlitlaglcpentvltWNNTATKIEHHQAARVigtgtfgcgsvivegedfvaenitfensapegsgqAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIhcksqgfitaqsrkssqettGYVFLRCVItgnggtgyiylgrpwgpfgRVVFAFTYMDQCirhvgwhnwgkvenersacfyeyrcfgpgscpakRETWARELLDEEAEQFLMhnfidpdpqrpwLAQRMALRIPYSA
MASCVVTVaqdgtgdyrtvqeaidrvplcntrrtlirispgvyrqpvyvPKTKNLITLAGLCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITfensapegsgqAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELLDEEAEQFLMHnfidpdpqrPWLAQRMALRIPYSA
MASCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELLDEEAEQFLMHNFIDPDPQRPWLAQRMALRIPYSA
***CVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQGFITAQ******ETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELLDEEAEQFLMHNFIDPDPQRPWLAQRM********
*ASCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELLDEEAEQFLMHNFIDPDPQRPWLAQRMALRIPY**
MASCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQG************TTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELLDEEAEQFLMHNFIDPDPQRPWLAQRMALRIPYSA
**SCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELLDEEAEQFLMHNFIDPDPQRPWLAQ**A*******
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MASCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELLDEEAEQFLMHNFIDPDPQRPWLAQRMALRIPYSA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query316 2.2.26 [Sep-21-2011]
Q9LVQ0317 Pectinesterase 31 OS=Arab yes no 0.987 0.984 0.817 1e-157
Q8VYZ3383 Probable pectinesterase 5 no no 0.886 0.731 0.469 2e-71
Q9SIJ9352 Putative pectinesterase 1 no no 0.870 0.781 0.393 6e-59
Q9ZQA3407 Probable pectinesterase 1 no no 0.905 0.702 0.391 6e-58
Q8LPF3362 Probable pectinesterase 6 no no 0.930 0.812 0.385 8e-57
Q9ZQA4333 Putative pectinesterase 1 no no 0.905 0.858 0.389 2e-56
O23038393 Probable pectinesterase 8 no no 0.879 0.707 0.392 1e-54
Q9LY17361 Probable pectinesterase 5 no no 0.889 0.778 0.396 2e-53
Q9FM79380 Pectinesterase QRT1 OS=Ar no no 0.917 0.763 0.405 2e-52
Q84WM7361 Pectinesterase PPME1 OS=A no no 0.924 0.808 0.357 2e-52
>sp|Q9LVQ0|PME31_ARATH Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1 Back     alignment and function desciption
 Score =  554 bits (1427), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 255/312 (81%), Positives = 285/312 (91%)

Query: 5   VVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPE 64
           +V V+QDG+GDY +VQ+AID VPL NT RT+IR+SPG+YRQPVYVPK KN IT AG+ PE
Sbjct: 6   MVRVSQDGSGDYCSVQDAIDSVPLGNTCRTVIRLSPGIYRQPVYVPKRKNFITFAGISPE 65

Query: 65  NTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAI 124
            TVLTWNNTA+KIEHHQA+RVIGTGTFGCGSVIVEGEDF+AENITFENSAPEGSGQAVAI
Sbjct: 66  ITVLTWNNTASKIEHHQASRVIGTGTFGCGSVIVEGEDFIAENITFENSAPEGSGQAVAI 125

Query: 125 RVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQ 184
           RVTADRCAFYNCRFLGWQDTLYLH+GKQYLKDCYIEGSVDFIFGNSTAL+EHCHIHCKSQ
Sbjct: 126 RVTADRCAFYNCRFLGWQDTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSQ 185

Query: 185 GFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVG 244
           GFITAQSRKSSQE+TGYVFLRCVITGNG +GY+YLGRPWGPFGRVV A+TYMD CIR+VG
Sbjct: 186 GFITAQSRKSSQESTGYVFLRCVITGNGQSGYMYLGRPWGPFGRVVLAYTYMDACIRNVG 245

Query: 245 WHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELLDEEAEQFLMHNFIDPDPQRPWL 304
           WHNWG  ENERSACFYEYRCFGPGSC ++R  W+REL+D+EA  F+ H+F+DP+  RPWL
Sbjct: 246 WHNWGNAENERSACFYEYRCFGPGSCSSERVPWSRELMDDEAGHFVHHSFVDPEQDRPWL 305

Query: 305 AQRMALRIPYSA 316
             RM ++ PYSA
Sbjct: 306 CLRMGVKTPYSA 317
Acts in the modification of cell walls via demethylesterification of cell wall pectin (By similarity). Acts in a blockwise manner, resulting in a cell wall rigidification.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIJ9|PME11_ARATH Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=3 SV=1 Back     alignment and function description
>sp|Q9ZQA3|PME15_ARATH Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1 Back     alignment and function description
>sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQA4|PME14_ARATH Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1 Back     alignment and function description
>sp|O23038|PME8_ARATH Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2 Back     alignment and function description
>sp|Q9LY17|PME50_ARATH Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1 Back     alignment and function description
>sp|Q9FM79|PME62_ARATH Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1 Back     alignment and function description
>sp|Q84WM7|PPME1_ARATH Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
255578282316 Pectinesterase precursor, putative [Rici 1.0 1.0 0.895 1e-172
224077586316 predicted protein [Populus trichocarpa] 1.0 1.0 0.879 1e-169
225452889316 PREDICTED: pectinesterase 31 [Vitis vini 1.0 1.0 0.882 1e-168
356531740316 PREDICTED: pectinesterase 31-like [Glyci 1.0 1.0 0.876 1e-167
388503334316 unknown [Lotus japonicus] 1.0 1.0 0.870 1e-166
357502011316 Pectinesterase [Medicago truncatula] gi| 1.0 1.0 0.841 1e-161
356568690316 PREDICTED: pectinesterase 31-like [Glyci 1.0 1.0 0.873 1e-160
357496503316 Pectinesterase [Medicago truncatula] gi| 1.0 1.0 0.816 1e-158
356550929316 PREDICTED: pectinesterase 31-like [Glyci 1.0 1.0 0.813 1e-156
297815216317 pectinesterase family protein [Arabidops 0.987 0.984 0.820 1e-155
>gi|255578282|ref|XP_002530008.1| Pectinesterase precursor, putative [Ricinus communis] gi|223530487|gb|EEF32370.1| Pectinesterase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 283/316 (89%), Positives = 305/316 (96%)

Query: 1   MASCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAG 60
           MA  V+TVAQDG+G+YRTVQEAID VPLCNT RT+IR++PG+YRQPVYVPKTKNLITLAG
Sbjct: 1   MACRVLTVAQDGSGNYRTVQEAIDAVPLCNTGRTVIRVAPGIYRQPVYVPKTKNLITLAG 60

Query: 61  LCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQ 120
           L PENTVLTW+NTATKI+HHQA+RVIGTGTFGCGSVIVEGEDF+AENITFENS+PEGSGQ
Sbjct: 61  LNPENTVLTWDNTATKIDHHQASRVIGTGTFGCGSVIVEGEDFIAENITFENSSPEGSGQ 120

Query: 121 AVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIH 180
           AVA+RVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTAL+EHCHIH
Sbjct: 121 AVAVRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIH 180

Query: 181 CKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCI 240
           CKS GFITAQSRKSSQE+TGYVFLRCVITGNGGT Y YLGRPWGPFGRVVFA+TYMDQC+
Sbjct: 181 CKSAGFITAQSRKSSQESTGYVFLRCVITGNGGTSYAYLGRPWGPFGRVVFAYTYMDQCV 240

Query: 241 RHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELLDEEAEQFLMHNFIDPDPQ 300
           RHVGW+NWGKVENERSACFYEYRCFGPGSCP+KR TWAREL+DEEAEQFL+H FIDPD Q
Sbjct: 241 RHVGWNNWGKVENERSACFYEYRCFGPGSCPSKRVTWARELIDEEAEQFLVHGFIDPDAQ 300

Query: 301 RPWLAQRMALRIPYSA 316
           RPWLAQRMALRIPY+A
Sbjct: 301 RPWLAQRMALRIPYTA 316

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224077586|ref|XP_002305315.1| predicted protein [Populus trichocarpa] gi|222848279|gb|EEE85826.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225452889|ref|XP_002283941.1| PREDICTED: pectinesterase 31 [Vitis vinifera] gi|296082952|emb|CBI22253.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356531740|ref|XP_003534434.1| PREDICTED: pectinesterase 31-like [Glycine max] Back     alignment and taxonomy information
>gi|388503334|gb|AFK39733.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357502011|ref|XP_003621294.1| Pectinesterase [Medicago truncatula] gi|124360252|gb|ABN08265.1| Pectinesterase [Medicago truncatula] gi|355496309|gb|AES77512.1| Pectinesterase [Medicago truncatula] gi|388508186|gb|AFK42159.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356568690|ref|XP_003552543.1| PREDICTED: pectinesterase 31-like [Glycine max] Back     alignment and taxonomy information
>gi|357496503|ref|XP_003618540.1| Pectinesterase [Medicago truncatula] gi|355493555|gb|AES74758.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356550929|ref|XP_003543834.1| PREDICTED: pectinesterase 31-like [Glycine max] Back     alignment and taxonomy information
>gi|297815216|ref|XP_002875491.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] gi|297321329|gb|EFH51750.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
TAIR|locus:2094652317 PME31 "pectin methylesterase 3 0.987 0.984 0.817 7.1e-148
TAIR|locus:2183214383 AT5G19730 [Arabidopsis thalian 0.908 0.749 0.473 1.9e-67
TAIR|locus:2049344352 PE11 "pectinesterase 11" [Arab 0.886 0.795 0.396 1.8e-55
TAIR|locus:2169023362 PME5 "pectin methylesterase 5" 0.930 0.812 0.388 4.8e-55
TAIR|locus:2040525333 AT2G36700 [Arabidopsis thalian 0.898 0.852 0.394 1e-52
TAIR|locus:2040535407 AT2G36710 [Arabidopsis thalian 0.905 0.702 0.391 2.1e-52
TAIR|locus:2162102380 QRT1 "QUARTET 1" [Arabidopsis 0.917 0.763 0.405 4.4e-52
TAIR|locus:2207245393 AT1G05310 [Arabidopsis thalian 0.889 0.715 0.394 3.1e-51
TAIR|locus:2183364361 AT5G07430 [Arabidopsis thalian 0.879 0.770 0.397 1.3e-50
TAIR|locus:2183349361 AT5G07420 [Arabidopsis thalian 0.876 0.767 0.389 5.2e-49
TAIR|locus:2094652 PME31 "pectin methylesterase 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1444 (513.4 bits), Expect = 7.1e-148, P = 7.1e-148
 Identities = 255/312 (81%), Positives = 285/312 (91%)

Query:     5 VVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPE 64
             +V V+QDG+GDY +VQ+AID VPL NT RT+IR+SPG+YRQPVYVPK KN IT AG+ PE
Sbjct:     6 MVRVSQDGSGDYCSVQDAIDSVPLGNTCRTVIRLSPGIYRQPVYVPKRKNFITFAGISPE 65

Query:    65 NTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAI 124
              TVLTWNNTA+KIEHHQA+RVIGTGTFGCGSVIVEGEDF+AENITFENSAPEGSGQAVAI
Sbjct:    66 ITVLTWNNTASKIEHHQASRVIGTGTFGCGSVIVEGEDFIAENITFENSAPEGSGQAVAI 125

Query:   125 RVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQ 184
             RVTADRCAFYNCRFLGWQDTLYLH+GKQYLKDCYIEGSVDFIFGNSTAL+EHCHIHCKSQ
Sbjct:   126 RVTADRCAFYNCRFLGWQDTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSQ 185

Query:   185 GFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVG 244
             GFITAQSRKSSQE+TGYVFLRCVITGNG +GY+YLGRPWGPFGRVV A+TYMD CIR+VG
Sbjct:   186 GFITAQSRKSSQESTGYVFLRCVITGNGQSGYMYLGRPWGPFGRVVLAYTYMDACIRNVG 245

Query:   245 WHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELLDEEAEQFLMHNFIDPDPQRPWL 304
             WHNWG  ENERSACFYEYRCFGPGSC ++R  W+REL+D+EA  F+ H+F+DP+  RPWL
Sbjct:   246 WHNWGNAENERSACFYEYRCFGPGSCSSERVPWSRELMDDEAGHFVHHSFVDPEQDRPWL 305

Query:   305 AQRMALRIPYSA 316
               RM ++ PYSA
Sbjct:   306 CLRMGVKTPYSA 317
GO:0005618 "cell wall" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS;IDA
GO:0042545 "cell wall modification" evidence=IEA
GO:0045488 "pectin metabolic process" evidence=IDA
TAIR|locus:2183214 AT5G19730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049344 PE11 "pectinesterase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169023 PME5 "pectin methylesterase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040525 AT2G36700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040535 AT2G36710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162102 QRT1 "QUARTET 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207245 AT1G05310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183364 AT5G07430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183349 AT5G07420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LVQ0PME31_ARATH3, ., 1, ., 1, ., 1, 10.81730.98730.9842yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.994
3rd Layer3.1.10.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_IV0964
pectinesterase family protein (EC-3.1.1.11) (316 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_VIII1759
SubName- Full=Putative uncharacterized protein; (327 aa)
  •  •  0.926
estExt_fgenesh4_pm.C_LG_VI0607
SubName- Full=Putative uncharacterized protein; (333 aa)
  •  •  0.923
fgenesh4_pg.C_LG_XVI000684
SubName- Full=Putative uncharacterized protein; (333 aa)
  •  •  0.923
gw1.X.2863.1
hypothetical protein (378 aa)
  •  •  0.922
eugene3.00081702
SubName- Full=Putative uncharacterized protein; (402 aa)
  •  •  0.921
gw1.II.376.1
hypothetical protein (392 aa)
  •  •  0.918
gw1.28.798.1
hypothetical protein (346 aa)
  •  •  0.916
eugene3.00150667
SubName- Full=Putative uncharacterized protein; (404 aa)
  •  •  0.916
estExt_fgenesh4_pg.C_LG_I2215
hypothetical protein (403 aa)
  •  •  0.915
gw1.XI.2918.1
hypothetical protein (368 aa)
  •  •  0.915

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
PLN02773317 PLN02773, PLN02773, pectinesterase 0.0
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-107
PLN02432293 PLN02432, PLN02432, putative pectinesterase 2e-98
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 1e-93
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 7e-91
PLN02304379 PLN02304, PLN02304, probable pectinesterase 3e-79
PLN02671359 PLN02671, PLN02671, pectinesterase 2e-78
PLN02634359 PLN02634, PLN02634, probable pectinesterase 2e-77
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 4e-71
PLN02314586 PLN02314, PLN02314, pectinesterase 2e-63
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 7e-62
PLN02497331 PLN02497, PLN02497, probable pectinesterase 1e-60
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 5e-59
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 2e-58
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 4e-58
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 8e-58
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 4e-57
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-56
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 5e-56
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 9e-56
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-55
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 6e-55
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 7e-55
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 2e-54
PLN02176340 PLN02176, PLN02176, putative pectinesterase 4e-54
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 8e-53
PLN02197588 PLN02197, PLN02197, pectinesterase 1e-52
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 3e-52
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 7e-52
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 4e-50
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 8e-49
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-43
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 3e-42
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 1e-33
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information 
 Score =  659 bits (1702), Expect = 0.0
 Identities = 276/316 (87%), Positives = 297/316 (93%)

Query: 1   MASCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAG 60
           MA  V+ VAQDG+GDY TVQ+AID VPLCN  RT+IR++PGVYRQPVYVPKTKNLITLAG
Sbjct: 2   MARRVLRVAQDGSGDYCTVQDAIDAVPLCNRCRTVIRVAPGVYRQPVYVPKTKNLITLAG 61

Query: 61  LCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQ 120
           L PE TVLTWNNTATKI+HHQA+RVIGTGTFGCG+VIVEGEDF+AENITFENSAPEGSGQ
Sbjct: 62  LSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGTVIVEGEDFIAENITFENSAPEGSGQ 121

Query: 121 AVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIH 180
           AVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYL+DCYIEGSVDFIFGNSTAL+EHCHIH
Sbjct: 122 AVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDCYIEGSVDFIFGNSTALLEHCHIH 181

Query: 181 CKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCI 240
           CKS GFITAQSRKSSQE+TGYVFLRCVITGNGG+GY+YLGRPWGPFGRVVFA+TYMD CI
Sbjct: 182 CKSAGFITAQSRKSSQESTGYVFLRCVITGNGGSGYMYLGRPWGPFGRVVFAYTYMDACI 241

Query: 241 RHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELLDEEAEQFLMHNFIDPDPQ 300
           R VGW+NWGK ENER+ACFYEYRCFGPGSCP+ R TWARELLDEEAEQFL H+FIDPD  
Sbjct: 242 RPVGWNNWGKAENERTACFYEYRCFGPGSCPSNRVTWARELLDEEAEQFLSHSFIDPDQD 301

Query: 301 RPWLAQRMALRIPYSA 316
           RPWL QRMAL+IPYSA
Sbjct: 302 RPWLCQRMALKIPYSA 317

Length = 317
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 316
PLN02773317 pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02634359 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02671359 pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.51
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.76
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.75
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.6
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.58
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.02
KOG1777 625 consensus Putative Zn-finger protein [General func 97.69
PLN02793443 Probable polygalacturonase 97.13
PLN02665366 pectinesterase family protein 97.13
PLN02682369 pectinesterase family protein 97.13
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.08
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.04
PLN02480343 Probable pectinesterase 96.94
PLN02432293 putative pectinesterase 96.89
PLN02218431 polygalacturonase ADPG 96.72
PLN02497331 probable pectinesterase 96.7
PLN02176340 putative pectinesterase 96.68
PLN02773317 pectinesterase 96.65
PRK10531422 acyl-CoA thioesterase; Provisional 96.64
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.59
PLN02671359 pectinesterase 96.59
PLN02634359 probable pectinesterase 96.5
PLN02155394 polygalacturonase 96.47
PLN02304379 probable pectinesterase 96.33
PLN03010409 polygalacturonase 96.21
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 96.19
PLN02170529 probable pectinesterase/pectinesterase inhibitor 96.06
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 96.03
PLN03003456 Probable polygalacturonase At3g15720 95.86
PLN02916502 pectinesterase family protein 95.82
PLN02506537 putative pectinesterase/pectinesterase inhibitor 95.62
PLN02488509 probable pectinesterase/pectinesterase inhibitor 95.59
PLN02201520 probable pectinesterase/pectinesterase inhibitor 95.55
smart00656190 Amb_all Amb_all domain. 95.55
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.52
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 95.51
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 95.36
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 95.31
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.13
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.08
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 95.02
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 94.97
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 94.77
PLN02301548 pectinesterase/pectinesterase inhibitor 94.77
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 94.69
PLN02197588 pectinesterase 94.66
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.64
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 94.62
PLN02314586 pectinesterase 94.61
PLN02468565 putative pectinesterase/pectinesterase inhibitor 94.45
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 94.01
PLN02313587 Pectinesterase/pectinesterase inhibitor 93.09
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 92.96
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 92.95
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 92.78
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 92.11
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 90.76
PLN02188404 polygalacturonase/glycoside hydrolase family prote 90.76
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 90.19
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 88.6
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 87.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 84.33
PLN02218431 polygalacturonase ADPG 80.28
>PLN02773 pectinesterase Back     alignment and domain information 
Probab=100.00  E-value=2.3e-101  Score=725.08  Aligned_cols=316  Identities=87%  Similarity=1.514  Sum_probs=296.9

Q ss_pred             CCcceEEEcCCCCCCCccHHHHHhhCCCCCCceEEEEEcCcEEecceeecCCCCCEEEeecCCCCeEEEeCCcccceecc
Q 021162            1 MASCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHH   80 (316)
Q Consensus         1 ~~~~~i~V~~~g~g~f~TIq~Ai~a~p~~~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~t~I~~~~~~~~~~~~   80 (316)
                      |+.++|+|+++|+|||+|||+||+++|..+.+|++|+|+||+|+|+|+|++.||+|||+|+++++|+|+|++.+..+.+.
T Consensus         2 ~~~~~i~Va~dGsGdf~TIq~Aida~P~~~~~~~~I~Ik~G~Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~   81 (317)
T PLN02773          2 MARRVLRVAQDGSGDYCTVQDAIDAVPLCNRCRTVIRVAPGVYRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHH   81 (317)
T ss_pred             CcceEEEECCCCCCCccCHHHHHhhchhcCCceEEEEEeCceEEEEEEECcCCccEEEEeCCCCceEEEccCcccccccc
Confidence            77889999999999999999999999999889999999999999999999999999999999999999999877654443


Q ss_pred             ccccccccccccceEEEEEcCCEEEEeeEEEcCCCCCCCceEEEEEecCceEEEEeEEEeccceeeeccccEEEEccEEE
Q 021162           81 QAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIE  160 (316)
Q Consensus        81 ~~~~~~~~~t~~~at~~v~a~~f~~~nlt~~Nt~~~~~~qA~Al~~~~d~~~~~nc~~~g~QDTL~~~~gr~yf~~c~I~  160 (316)
                      ......+.+|++|+||.|.+++|+++||||+|+++...+|||||++.+||++|+||+|+|+|||||++.|||||++|+||
T Consensus        82 ~~~~~~g~gT~~SaTv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~gr~yf~~c~Ie  161 (317)
T PLN02773         82 QASRVIGTGTFGCGTVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDCYIE  161 (317)
T ss_pred             ccccccCcCccCceEEEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCCCCEEEEeeEEe
Confidence            33333466899999999999999999999999998777899999999999999999999999999999999999999999


Q ss_pred             ccceEEecccceEEEeeEEEEeeeeeEEecCCCCCCCCceEEEeccEEeecCCcceEEeccCCCCCceEEEEeeccCcee
Q 021162          161 GSVDFIFGNSTALIEHCHIHCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCI  240 (316)
Q Consensus       161 G~vDfIfG~g~a~f~~c~i~~~~~g~ItA~~r~~~~~~~G~vf~~c~it~~~~~~~~yLGRpW~~~~~vv~~~s~~~~~i  240 (316)
                      |+||||||+|.++||+|+|+++..|+||||+|.++.+.+||||.+|+|+++++.+++||||||+++++|||++|+|+++|
T Consensus       162 G~VDFIFG~g~a~Fe~c~i~s~~~g~ITA~~r~~~~~~~GfvF~~c~it~~~~~~~~yLGRpW~~~a~vVf~~t~l~~~I  241 (317)
T PLN02773        162 GSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSSQESTGYVFLRCVITGNGGSGYMYLGRPWGPFGRVVFAYTYMDACI  241 (317)
T ss_pred             ecccEEeeccEEEEEeeEEEEccCcEEECCCCCCCCCCceEEEEccEEecCCCCcceeecCCCCCCceEEEEecccCCeE
Confidence            99999999999999999999999999999999887778999999999999876667999999999999999999999999


Q ss_pred             cCCCcccCCCCCCccceEEEEecccCCCCCCCCcccccccCCHHHHhchhhhcccCCCCCCCCcCCCCccCCCccC
Q 021162          241 RHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELLDEEAEQFLMHNFIDPDPQRPWLAQRMALRIPYSA  316 (316)
Q Consensus       241 ~p~GW~~w~~~~~~~~~~f~Ey~~~GpGa~~s~R~~~~~~lt~~ea~~~~~~~~~~~~~~~~W~~~~~~~~~p~~~  316 (316)
                      +|+||.+|+...++++++|+||+|+|||+++++|++|+++|+++||++|+.++||+|+++.+|+|++|+++|||.+
T Consensus       242 ~p~GW~~w~~~~~~~t~~f~Ey~~~GpGa~~s~Rv~w~~~L~~~ea~~ft~~~fi~g~~~~~Wlp~~~~~~~~~~~  317 (317)
T PLN02773        242 RPVGWNNWGKAENERTACFYEYRCFGPGSCPSNRVTWARELLDEEAEQFLSHSFIDPDQDRPWLCQRMALKIPYSA  317 (317)
T ss_pred             ccccccccCCCCCCCceEEEEEccccCCCCcCCCccccccCCHHHHHHhhHHhhcCCCCCCCccccchhccCCCCC
Confidence            9999999988777789999999999999999999999999999999999999999988778899999999999975

>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 8e-46
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 2e-37
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 2e-22
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 2e-22
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 2e-21
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 3e-19
3grh_A422 Crystal Structure Of Escherichia Coli Ybhc Length = 3e-05
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  180 bits (457), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 154/307 (50%), Gaps = 30/307 (9%)
Query: 6   VTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPEN 65
           V VA DG+GDY+TV EA+   P  +  R +IRI  GVYR+ V VPK K  I   G    +
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68
Query: 66  TVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIR 125
           T++T +               G+ TF   +V   G  F+A +ITF+N+A     QAVA+R
Sbjct: 69  TIITASKNVQD----------GSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALR 118
Query: 126 VTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQG 185
           V +D  AFY C  L +QD+LY+H  +Q+  +C+I G+VDFIFGN+  +++ C IH +  G
Sbjct: 119 VGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPG 178
Query: 186 -----FITAQSRKSSQETTGYVFLRCVITGNGGTGYI---------YLGRPWGPFGRVVF 231
                 +TAQ R    + TG V  +  I   G T  +         YLGRPW  + R V 
Sbjct: 179 SGQKNMVTAQGRTDPNQNTGIVIQKSRI---GATSDLQPVQSSFPTYLGRPWKEYSRTVV 235
Query: 232 AFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELL---DEEAEQ 288
             + +   I   GW  W       +  + EY+  G G+  + R TW    +     EA+ 
Sbjct: 236 MQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQG 295
Query: 289 FLMHNFI 295
           F   +FI
Sbjct: 296 FTPGSFI 302
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|3GRH|A Chain A, Crystal Structure Of Escherichia Coli Ybhc Length = 422 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-135
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-134
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-115
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-114
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-101
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  384 bits (988), Expect = e-135
 Identities = 94/325 (28%), Positives = 143/325 (44%), Gaps = 30/325 (9%)

Query: 6   VTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPEN 65
             VAQDGTGDY+T+ EA+   P  +  R +I +  G Y++ V V   K  + + G     
Sbjct: 5   AVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYA 64

Query: 66  TVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIR 125
           T +T +               G+ TF   ++   G+ F+ ++I  +N+A     QAVA+R
Sbjct: 65  TTITGSLNVVD----------GSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALR 114

Query: 126 VTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCK--- 182
           V AD      CR   +QDTLY H  +Q+ +D Y+ G+VDFIFGN+  + + C +  +   
Sbjct: 115 VGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPG 174

Query: 183 --SQGFITAQSRKSSQETTGYVFLRCVITGNGG------TGYIYLGRPWGPFGRVVFAFT 234
              Q  +TAQ R    + TG     C I  +            YLGRPW  + R V   +
Sbjct: 175 KYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMES 234

Query: 235 YMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWARE---LLDEEAEQFLM 291
           Y+   I   GW  W      ++  + E+   GPG+  +KR  W          +A  F +
Sbjct: 235 YLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTV 294

Query: 292 HNFIDPDPQRPWLAQRMALRIPYSA 316
              I       WL    +  + Y  
Sbjct: 295 AKLIQGG---SWLR---STGVAYVD 313
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.67
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.46
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.89
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.25
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.01
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.81
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.78
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.48
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.45
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.44
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.4
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.31
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.3
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.28
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.2
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.12
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.09
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 96.98
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.98
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 96.84
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.76
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.45
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.44
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.43
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.28
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.1
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.99
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 95.96
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.85
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.5
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.37
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 95.22
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.12
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 94.84
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 91.87
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 90.61
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 90.47
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 90.46
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 90.2
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 89.81
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 89.44
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 88.58
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 86.65
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 86.12
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 83.34
1vcl_A432 Hemolytic lectin CEL-III; hemolysis, hemagglutinat 83.33
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 82.77
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 80.01
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
Probab=100.00  E-value=1.9e-88  Score=641.44  Aligned_cols=298  Identities=37%  Similarity=0.659  Sum_probs=276.7

Q ss_pred             cceEEEcCCCCCCCccHHHHHhhCCCCCCceEEEEEcCcEEecceeecCCCCCEEEeecCCCCeEEEeCCcccceecccc
Q 021162            3 SCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHHQA   82 (316)
Q Consensus         3 ~~~i~V~~~g~g~f~TIq~Ai~a~p~~~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~t~I~~~~~~~~~~~~~~   82 (316)
                      ..+|+|+++|+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.||+|||+|+++++|+|+++...        
T Consensus         6 ~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~--------   77 (319)
T 1gq8_A            6 GPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNV--------   77 (319)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCT--------
T ss_pred             cceEEECCCCCCCccCHHHHHHhccccCCceEEEEEcCCeEeeeeeccCCCccEEEEEcCCCccEEEecccc--------
Confidence            468999999999999999999999999999999999999999999999999999999999999999998742        


Q ss_pred             ccccccccccceEEEEEcCCEEEEeeEEEcCCCCCCCceEEEEEecCceEEEEeEEEeccceeeeccccEEEEccEEEcc
Q 021162           83 ARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGS  162 (316)
Q Consensus        83 ~~~~~~~t~~~at~~v~a~~f~~~nlt~~Nt~~~~~~qA~Al~~~~d~~~~~nc~~~g~QDTL~~~~gr~yf~~c~I~G~  162 (316)
                        ..+.+|+.++||.|.+++|+++||||+|+++...+||+||++.+|+++|+||+|+|+|||||++.+||||++|+|+|+
T Consensus        78 --~~g~~t~~satv~v~a~~f~~~nlt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~  155 (319)
T 1gq8_A           78 --QDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGT  155 (319)
T ss_dssp             --TTTCCTGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEES
T ss_pred             --cCCCCccceEEEEEECCCEEEEEeEeEccCCCcCCceEEEEecCCcEEEEEeEECccceeeeecCccEEEEecEEEee
Confidence              235678889999999999999999999999877789999999999999999999999999999999999999999999


Q ss_pred             ceEEecccceEEEeeEEEEee-----eeeEEecCCCCCCCCceEEEeccEEeecCCc------ceEEeccCCCCCceEEE
Q 021162          163 VDFIFGNSTALIEHCHIHCKS-----QGFITAQSRKSSQETTGYVFLRCVITGNGGT------GYIYLGRPWGPFGRVVF  231 (316)
Q Consensus       163 vDfIfG~g~a~f~~c~i~~~~-----~g~ItA~~r~~~~~~~G~vf~~c~it~~~~~------~~~yLGRpW~~~~~vv~  231 (316)
                      ||||||++.++||+|+|+++.     .++||||+|+++.+.+||||+||+|+++++.      +++||||||++++||||
T Consensus       156 vDFIfG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~  235 (319)
T 1gq8_A          156 VDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVV  235 (319)
T ss_dssp             SSCEEESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEE
T ss_pred             eeEEecCCcEEEEeeEEEEecCCCCCceEEEeCCCCCCCCCceEEEECCEEecCCCccccccceeEEecccCCCcceEEE
Confidence            999999999999999999975     4799999999888999999999999987642      26899999999999999


Q ss_pred             EeeccCceecCCCcccCCCCCCccceEEEEecccCCCCCCCCcccccc--cCC-HHHHhchhhhcccCCCCCCCCcCCCC
Q 021162          232 AFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWAR--ELL-DEEAEQFLMHNFIDPDPQRPWLAQRM  308 (316)
Q Consensus       232 ~~s~~~~~i~p~GW~~w~~~~~~~~~~f~Ey~~~GpGa~~s~R~~~~~--~lt-~~ea~~~~~~~~~~~~~~~~W~~~~~  308 (316)
                      ++|+|+++|+|+||.+|++..+.++++|+||+|+|||+++++||+|++  +|+ ++||++|+..+||+|   ++|+|.+ 
T Consensus       236 ~~t~~~~~I~p~GW~~w~~~~~~~t~~y~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g---~~W~p~~-  311 (319)
T 1gq8_A          236 MQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAG---GSWLKAT-  311 (319)
T ss_dssp             ESCEECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCG---GGTSGGG-
T ss_pred             EeccCCCcccccccCcCCCCCCCCeeEEEEEccccCCCCcccccccccccccCCHHHHHhhhHHhhcCC---CCCcCCC-
Confidence            999999999999999999877788999999999999999999999996  664 699999999999995   4899985 


Q ss_pred             ccCCCccC
Q 021162          309 ALRIPYSA  316 (316)
Q Consensus       309 ~~~~p~~~  316 (316)
                        ++||..
T Consensus       312 --~~~~~~  317 (319)
T 1gq8_A          312 --TFPFSL  317 (319)
T ss_dssp             --TSCCCC
T ss_pred             --CccccC
Confidence              899863
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination, pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A* 2z49_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 316
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-116
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 2e-82
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 3e-04
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  334 bits (859), Expect = e-116
 Identities = 110/325 (33%), Positives = 157/325 (48%), Gaps = 30/325 (9%)

Query: 6   VTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPEN 65
           V VA DG+GDY+TV EA+   P  +  R +IRI  GVYR+ V VPK K  I   G    +
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68

Query: 66  TVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIR 125
           T++T +               G+ TF   +V   G  F+A +ITF+N+A     QAVA+R
Sbjct: 69  TIITASKNVQD----------GSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALR 118

Query: 126 VTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCK--- 182
           V +D  AFY C  L +QD+LY+H  +Q+  +C+I G+VDFIFGN+  +++ C IH +   
Sbjct: 119 VGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPG 178

Query: 183 --SQGFITAQSRKSSQETTGYVFLRCVITGNG------GTGYIYLGRPWGPFGRVVFAFT 234
              +  +TAQ R    + TG V  +  I           +   YLGRPW  + R V   +
Sbjct: 179 SGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQS 238

Query: 235 YMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWA---RELLDEEAEQFLM 291
            +   I   GW  W       +  + EY+  G G+  + R TW          EA+ F  
Sbjct: 239 SITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTP 298

Query: 292 HNFIDPDPQRPWLAQRMALRIPYSA 316
            +FI       WL    A   P+S 
Sbjct: 299 GSFIAGG---SWLK---ATTFPFSL 317
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.15
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.76
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.29
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.51
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.5
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.92
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.59
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.52
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.5
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.25
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.92
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.84
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.8
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.77
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.3
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 95.18
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 91.41
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 90.89
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 84.38
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 81.54
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 80.86
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 80.42
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1.2e-93  Score=672.56  Aligned_cols=298  Identities=37%  Similarity=0.656  Sum_probs=278.3

Q ss_pred             cceEEEcCCCCCCCccHHHHHhhCCCCCCceEEEEEcCcEEecceeecCCCCCEEEeecCCCCeEEEeCCcccceecccc
Q 021162            3 SCVVTVAQDGTGDYRTVQEAIDRVPLCNTRRTLIRISPGVYRQPVYVPKTKNLITLAGLCPENTVLTWNNTATKIEHHQA   82 (316)
Q Consensus         3 ~~~i~V~~~g~g~f~TIq~Ai~a~p~~~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~t~I~~~~~~~~~~~~~~   82 (316)
                      +..|+|++||+|||+|||+||+++|.++++|++|+|+||+|+|+|+|++.||+|||+|++++.|+|+++..+.       
T Consensus         6 ~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~-------   78 (319)
T d1gq8a_           6 GPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQ-------   78 (319)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTT-------
T ss_pred             CCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEeccccc-------
Confidence            4579999999999999999999999999999999999999999999999999999999999999999987542       


Q ss_pred             ccccccccccceEEEEEcCCEEEEeeEEEcCCCCCCCceEEEEEecCceEEEEeEEEeccceeeeccccEEEEccEEEcc
Q 021162           83 ARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGS  162 (316)
Q Consensus        83 ~~~~~~~t~~~at~~v~a~~f~~~nlt~~Nt~~~~~~qA~Al~~~~d~~~~~nc~~~g~QDTL~~~~gr~yf~~c~I~G~  162 (316)
                         .+.+|+.++||.+.+++|+++||||+|+++...+||+||++.+||++|++|+|+|+|||||++.|||||++|+|||+
T Consensus        79 ---~~~~t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~  155 (319)
T d1gq8a_          79 ---DGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGT  155 (319)
T ss_dssp             ---TTCCTGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEES
T ss_pred             ---CCCccccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEee
Confidence               34567789999999999999999999999877889999999999999999999999999999999999999999999


Q ss_pred             ceEEecccceEEEeeEEEEee-----eeeEEecCCCCCCCCceEEEeccEEeecCC------cceEEeccCCCCCceEEE
Q 021162          163 VDFIFGNSTALIEHCHIHCKS-----QGFITAQSRKSSQETTGYVFLRCVITGNGG------TGYIYLGRPWGPFGRVVF  231 (316)
Q Consensus       163 vDfIfG~g~a~f~~c~i~~~~-----~g~ItA~~r~~~~~~~G~vf~~c~it~~~~------~~~~yLGRpW~~~~~vv~  231 (316)
                      ||||||+++++||+|+|+++.     .++||||+|.++.+++||||.+|+|+++++      .+++||||||++++||||
T Consensus       156 vDFIfG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf  235 (319)
T d1gq8a_         156 VDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVV  235 (319)
T ss_dssp             SSCEEESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEE
T ss_pred             ccEEecCceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEE
Confidence            999999999999999999975     368999999998889999999999998874      235899999999999999


Q ss_pred             EeeccCceecCCCcccCCCCCCccceEEEEecccCCCCCCCCccccc---ccCCHHHHhchhhhcccCCCCCCCCcCCCC
Q 021162          232 AFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWA---RELLDEEAEQFLMHNFIDPDPQRPWLAQRM  308 (316)
Q Consensus       232 ~~s~~~~~i~p~GW~~w~~~~~~~~~~f~Ey~~~GpGa~~s~R~~~~---~~lt~~ea~~~~~~~~~~~~~~~~W~~~~~  308 (316)
                      ++|+|+++|.|+||.+|+...+.++++|+||+|+|||+++++|++|+   ++|+++||++|+.++||+|   ++|+|.. 
T Consensus       236 ~~t~l~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G---~~Wl~~t-  311 (319)
T d1gq8a_         236 MQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAG---GSWLKAT-  311 (319)
T ss_dssp             ESCEECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCG---GGTSGGG-
T ss_pred             EecccccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCC---CcccccC-
Confidence            99999999999999999988788999999999999999999999997   5899999999999999985   4799985 


Q ss_pred             ccCCCccC
Q 021162          309 ALRIPYSA  316 (316)
Q Consensus       309 ~~~~p~~~  316 (316)
                        ++||.+
T Consensus       312 --~~p~~~  317 (319)
T d1gq8a_         312 --TFPFSL  317 (319)
T ss_dssp             --TSCCCC
T ss_pred             --CCccCC
Confidence              999974
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure