Query 021163
Match_columns 316
No_of_seqs 187 out of 1691
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:05:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14558 pyrH uridylate kinase 100.0 5.6E-40 1.2E-44 300.7 24.3 212 91-306 1-231 (231)
2 PRK14556 pyrH uridylate kinase 100.0 4.8E-40 1E-44 303.5 22.5 217 89-305 14-248 (249)
3 COG0528 PyrH Uridylate kinase 100.0 6.3E-40 1.4E-44 297.0 22.7 217 88-305 3-238 (238)
4 PRK00358 pyrH uridylate kinase 100.0 1.2E-39 2.6E-44 298.0 24.2 213 91-304 1-231 (231)
5 cd04239 AAK_UMPK-like AAK_UMPK 100.0 2.9E-38 6.2E-43 288.9 22.3 212 92-304 1-229 (229)
6 TIGR02075 pyrH_bact uridylate 100.0 8E-38 1.7E-42 287.0 23.0 214 90-304 1-233 (233)
7 cd04254 AAK_UMPK-PyrH-Ec UMP k 100.0 7.7E-38 1.7E-42 286.7 21.0 213 91-304 1-231 (231)
8 PRK14557 pyrH uridylate kinase 100.0 4E-37 8.6E-42 285.0 23.6 220 89-309 3-242 (247)
9 COG0263 ProB Glutamate 5-kinas 100.0 4E-35 8.7E-40 278.5 20.0 218 87-309 3-263 (369)
10 PTZ00489 glutamate 5-kinase; P 100.0 1.3E-33 2.9E-38 263.6 20.8 216 87-307 5-261 (264)
11 PRK12314 gamma-glutamyl kinase 100.0 1.9E-33 4E-38 263.1 19.7 216 87-306 6-265 (266)
12 PRK13402 gamma-glutamyl kinase 100.0 5.7E-33 1.2E-37 270.2 22.4 220 89-313 4-265 (368)
13 cd04256 AAK_P5CS_ProBA AAK_P5C 100.0 3.1E-33 6.6E-38 263.9 19.2 216 87-304 5-284 (284)
14 cd04253 AAK_UMPK-PyrH-Pf AAK_U 100.0 5.2E-33 1.1E-37 253.0 20.0 198 92-304 1-221 (221)
15 TIGR02076 pyrH_arch uridylate 100.0 3.6E-32 7.9E-37 247.3 20.9 198 93-304 1-221 (221)
16 PRK05429 gamma-glutamyl kinase 100.0 8.6E-32 1.9E-36 262.7 22.8 220 88-313 6-269 (372)
17 cd04242 AAK_G5K_ProB AAK_G5K_P 100.0 8.4E-32 1.8E-36 249.6 20.5 210 92-304 1-251 (251)
18 cd02115 AAK Amino Acid Kinases 100.0 1.8E-32 3.8E-37 251.2 15.0 209 94-303 1-248 (248)
19 TIGR01027 proB glutamate 5-kin 100.0 2.3E-31 5.1E-36 258.9 21.9 218 91-313 1-261 (363)
20 cd04255 AAK_UMPK-MosAB AAK_UMP 100.0 4.7E-31 1E-35 246.4 21.3 202 92-304 32-262 (262)
21 COG1608 Predicted archaeal kin 100.0 1.1E-31 2.4E-36 243.5 16.1 209 93-305 3-252 (252)
22 cd04241 AAK_FomA-like AAK_FomA 100.0 1.4E-31 3E-36 247.6 16.5 206 92-303 1-252 (252)
23 cd04246 AAK_AK-DapG-like AAK_A 100.0 3.3E-31 7.2E-36 243.6 18.5 203 92-304 1-239 (239)
24 cd04261 AAK_AKii-LysC-BS AAK_A 100.0 5.2E-31 1.1E-35 242.5 18.9 203 92-304 1-239 (239)
25 COG0527 LysC Aspartokinases [A 100.0 3.5E-31 7.7E-36 263.1 18.1 164 136-308 107-292 (447)
26 cd04234 AAK_AK AAK_AK: Amino A 100.0 4.5E-30 9.8E-35 234.7 19.0 194 92-304 1-227 (227)
27 PRK08841 aspartate kinase; Val 100.0 5.6E-30 1.2E-34 251.4 20.4 205 91-305 2-242 (392)
28 TIGR00656 asp_kin_monofn aspar 100.0 4.7E-30 1E-34 252.0 18.2 205 92-306 2-244 (401)
29 cd04244 AAK_AK-LysC-like AAK_A 100.0 1.1E-29 2.4E-34 241.2 17.5 158 138-304 116-298 (298)
30 PRK14058 acetylglutamate/acety 100.0 1.9E-29 4.1E-34 236.1 16.9 205 92-305 1-267 (268)
31 cd04260 AAK_AKi-DapG-BS AAK_AK 100.0 7.5E-29 1.6E-33 229.1 19.5 202 93-304 2-244 (244)
32 PRK08210 aspartate kinase I; R 100.0 5.1E-29 1.1E-33 245.2 18.2 206 91-306 2-248 (403)
33 cd04245 AAK_AKiii-YclM-BS AAK_ 100.0 1.1E-28 2.3E-33 233.3 19.4 158 138-304 110-288 (288)
34 PRK06635 aspartate kinase; Rev 100.0 6.2E-29 1.3E-33 244.4 18.0 206 91-306 2-243 (404)
35 PLN02512 acetylglutamate kinas 100.0 1.8E-28 4E-33 233.9 19.6 212 88-305 45-309 (309)
36 CHL00202 argB acetylglutamate 100.0 2.6E-28 5.7E-33 230.3 18.1 210 89-304 22-283 (284)
37 PRK07431 aspartate kinase; Pro 100.0 3.2E-28 7E-33 250.0 19.5 207 91-307 2-246 (587)
38 KOG1154 Gamma-glutamyl kinase 100.0 1.8E-28 3.8E-33 221.4 14.8 220 85-306 4-276 (285)
39 TIGR01092 P5CS delta l-pyrroli 100.0 7.1E-28 1.5E-32 252.3 21.0 216 89-307 6-277 (715)
40 cd04259 AAK_AK-DapDC AAK_AK-Da 100.0 6.7E-28 1.5E-32 228.6 18.3 160 136-304 107-295 (295)
41 cd04258 AAK_AKiii-LysC-EC AAK_ 100.0 1E-27 2.2E-32 226.9 19.0 158 138-304 111-292 (292)
42 cd04240 AAK_UC AAK_UC: Unchara 100.0 5.2E-28 1.1E-32 218.0 16.1 186 94-303 1-203 (203)
43 PRK00942 acetylglutamate kinas 100.0 6.3E-28 1.4E-32 227.2 17.1 211 89-306 22-283 (283)
44 cd04257 AAK_AK-HSDH AAK_AK-HSD 100.0 7.2E-28 1.6E-32 228.3 17.3 158 138-304 115-294 (294)
45 PRK08373 aspartate kinase; Val 100.0 1.8E-27 3.9E-32 229.4 19.8 207 89-306 2-280 (341)
46 cd04250 AAK_NAGK-C AAK_NAGK-C: 100.0 5.7E-28 1.2E-32 227.2 15.3 209 89-303 13-279 (279)
47 cd04243 AAK_AK-HSDH-like AAK_A 100.0 1.2E-27 2.5E-32 226.8 17.4 158 138-304 114-293 (293)
48 TIGR00657 asp_kinases aspartat 100.0 1.7E-27 3.7E-32 237.0 18.1 158 140-306 105-284 (441)
49 cd04251 AAK_NAGK-UC AAK_NAGK-U 100.0 1.1E-27 2.5E-32 222.9 14.0 199 93-303 1-257 (257)
50 PRK06291 aspartate kinase; Pro 99.9 4.3E-27 9.2E-32 235.8 18.9 161 137-306 119-304 (465)
51 COG0548 ArgB Acetylglutamate k 99.9 9.5E-27 2.1E-31 216.1 19.5 212 89-305 1-265 (265)
52 PLN02551 aspartokinase 99.9 7.6E-27 1.6E-31 236.3 20.2 162 136-306 161-349 (521)
53 PRK09034 aspartate kinase; Rev 99.9 9.3E-27 2E-31 232.7 19.8 162 136-306 108-290 (454)
54 PLN02418 delta-1-pyrroline-5-c 99.9 6.3E-27 1.4E-31 245.0 19.3 217 88-307 13-285 (718)
55 PRK09084 aspartate kinase III; 99.9 6.7E-27 1.5E-31 233.3 17.8 161 136-306 105-290 (448)
56 cd04238 AAK_NAGK-like AAK_NAGK 99.9 2.8E-27 6E-32 219.6 13.6 202 93-303 1-256 (256)
57 TIGR02078 AspKin_pair Pyrococc 99.9 2.6E-26 5.7E-31 220.2 18.9 155 138-307 95-272 (327)
58 PRK05925 aspartate kinase; Pro 99.9 1.4E-26 3.1E-31 230.2 17.5 161 137-306 99-281 (440)
59 cd04249 AAK_NAGK-NC AAK_NAGK-N 99.9 9.4E-27 2E-31 215.7 14.5 203 93-303 1-252 (252)
60 cd04247 AAK_AK-Hom3 AAK_AK-Hom 99.9 2E-25 4.4E-30 212.5 18.4 162 136-306 121-306 (306)
61 PRK09466 metL bifunctional asp 99.9 9E-26 2E-30 238.5 16.9 159 138-305 120-300 (810)
62 PRK12353 putative amino acid k 99.9 4.3E-25 9.4E-30 211.1 17.7 209 89-305 1-314 (314)
63 PF00696 AA_kinase: Amino acid 99.9 1.8E-25 3.9E-30 204.1 11.9 190 91-283 1-242 (242)
64 cd04235 AAK_CK AAK_CK: Carbama 99.9 4.4E-24 9.5E-29 203.0 18.1 206 92-304 1-308 (308)
65 PRK09436 thrA bifunctional asp 99.9 4.5E-24 9.6E-29 226.5 18.3 158 140-306 119-298 (819)
66 TIGR00746 arcC carbamate kinas 99.9 2.2E-23 4.8E-28 198.7 19.5 206 91-304 1-309 (310)
67 PRK09181 aspartate kinase; Val 99.9 9.8E-24 2.1E-28 211.7 17.9 157 140-306 139-312 (475)
68 PRK08961 bifunctional aspartat 99.9 3.6E-24 7.9E-29 228.6 15.4 158 140-306 119-306 (861)
69 TIGR01890 N-Ac-Glu-synth amino 99.9 7.9E-24 1.7E-28 210.1 15.6 212 89-308 16-282 (429)
70 cd04248 AAK_AK-Ectoine AAK_AK- 99.9 1.6E-23 3.4E-28 198.2 16.5 160 135-304 128-304 (304)
71 TIGR00761 argB acetylglutamate 99.9 7.4E-24 1.6E-28 193.8 12.6 182 92-280 1-229 (231)
72 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.9 3.5E-23 7.7E-28 195.1 17.3 207 89-303 17-280 (280)
73 PRK05279 N-acetylglutamate syn 99.9 1.6E-22 3.5E-27 201.2 17.5 212 89-308 24-294 (441)
74 cd04252 AAK_NAGK-fArgBP AAK_NA 99.9 2.5E-22 5.5E-27 186.1 15.3 198 94-303 2-248 (248)
75 PRK12454 carbamate kinase-like 99.9 1.8E-21 4E-26 185.1 19.3 208 91-305 3-313 (313)
76 cd04236 AAK_NAGS-Urea AAK_NAGS 99.9 9.9E-22 2.1E-26 184.3 15.1 198 89-303 34-271 (271)
77 PRK12352 putative carbamate ki 99.9 1.2E-20 2.6E-25 180.3 21.2 208 91-305 3-315 (316)
78 PRK12686 carbamate kinase; Rev 99.9 8.8E-21 1.9E-25 180.7 19.3 207 90-304 2-311 (312)
79 COG2054 Uncharacterized archae 99.9 5.6E-21 1.2E-25 167.0 14.4 192 94-306 3-211 (212)
80 PRK12354 carbamate kinase; Rev 99.8 2E-19 4.4E-24 170.8 19.4 117 186-308 168-303 (307)
81 KOG0456 Aspartate kinase [Amin 99.8 1.4E-19 3E-24 173.6 12.0 165 134-307 186-377 (559)
82 PRK04531 acetylglutamate kinas 99.8 8.1E-19 1.8E-23 172.7 17.4 185 89-307 35-251 (398)
83 PLN02825 amino-acid N-acetyltr 99.8 8.1E-18 1.8E-22 170.1 17.3 215 88-309 15-368 (515)
84 PRK09411 carbamate kinase; Rev 99.8 1.9E-17 4E-22 156.4 17.4 207 91-304 2-296 (297)
85 COG0549 ArcC Carbamate kinase 99.6 1E-13 2.3E-18 129.2 18.7 207 91-305 1-312 (312)
86 KOG2436 Acetylglutamate kinase 97.4 0.00054 1.2E-08 69.0 8.2 150 88-238 92-286 (520)
87 COG1778 Low specificity phosph 81.7 1.7 3.7E-05 38.2 3.5 58 226-292 10-67 (170)
88 TIGR02726 phenyl_P_delta pheny 70.5 4.4 9.6E-05 35.5 3.2 60 226-296 9-70 (169)
89 PRK10976 putative hydrolase; P 59.5 20 0.00043 32.8 5.4 51 226-295 4-54 (266)
90 PRK15126 thiamin pyrimidine py 59.3 24 0.00052 32.4 6.0 51 226-295 4-54 (272)
91 PTZ00174 phosphomannomutase; P 59.1 20 0.00043 32.9 5.3 51 225-295 6-57 (247)
92 PRK01158 phosphoglycolate phos 58.1 23 0.0005 31.4 5.5 28 267-294 27-54 (230)
93 TIGR01670 YrbI-phosphatas 3-de 56.9 29 0.00064 29.4 5.7 59 226-294 3-62 (154)
94 PRK10530 pyridoxal phosphate ( 54.9 29 0.00063 31.6 5.7 50 226-294 5-54 (272)
95 PRK10513 sugar phosphate phosp 53.4 28 0.0006 31.8 5.3 49 226-294 5-54 (270)
96 TIGR01487 SPP-like sucrose-pho 51.9 32 0.0007 30.4 5.4 50 226-294 3-52 (215)
97 PLN02887 hydrolase family prot 47.7 44 0.00095 35.2 6.3 69 207-295 291-360 (580)
98 PRK09484 3-deoxy-D-manno-octul 39.5 32 0.00069 30.1 3.3 60 225-294 22-82 (183)
99 PRK03669 mannosyl-3-phosphogly 37.8 59 0.0013 30.0 5.0 54 223-295 6-59 (271)
100 PLN03017 trehalose-phosphatase 30.1 1.5E+02 0.0033 29.4 6.6 63 214-294 101-166 (366)
101 PF00994 MoCF_biosynth: Probab 29.7 3.2E+02 0.007 22.5 7.8 67 151-222 18-84 (144)
102 PRK14501 putative bifunctional 28.6 2E+02 0.0043 30.9 7.7 73 210-296 478-551 (726)
103 TIGR03720 exospor_lead exospor 27.7 34 0.00074 20.9 1.0 13 64-76 6-18 (26)
104 PLN02423 phosphomannomutase 27.4 1.3E+02 0.0028 27.5 5.4 52 224-295 7-58 (245)
105 PF03437 BtpA: BtpA family; I 26.8 95 0.0021 29.2 4.3 45 264-308 187-235 (254)
106 PRK10187 trehalose-6-phosphate 26.2 1.3E+02 0.0029 27.9 5.2 58 224-295 14-72 (266)
107 COG1058 CinA Predicted nucleot 24.9 4.4E+02 0.0095 24.9 8.4 69 151-224 22-90 (255)
108 PLN02151 trehalose-phosphatase 24.7 1.4E+02 0.003 29.5 5.2 67 214-295 88-154 (354)
109 PF13511 DUF4124: Domain of un 24.1 66 0.0014 22.6 2.2 28 214-241 4-33 (60)
110 TIGR00099 Cof-subfamily Cof su 23.0 1.5E+02 0.0033 26.7 4.9 30 266-295 22-51 (256)
111 PRK03673 hypothetical protein; 21.4 5.1E+02 0.011 25.9 8.6 68 151-223 22-89 (396)
112 PF11760 CbiG_N: Cobalamin syn 21.2 1.3E+02 0.0027 23.6 3.3 27 195-225 52-78 (84)
113 cd00885 cinA Competence-damage 21.0 5.5E+02 0.012 22.2 8.1 68 151-223 20-87 (170)
No 1
>PRK14558 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=5.6e-40 Score=300.67 Aligned_cols=212 Identities=45% Similarity=0.759 Sum_probs=181.7
Q ss_pred CeEEEEECccccccCCCCCCC------------------CCeEEEEChhHHHHHHHHcccCCCCccHHHHHHHHHHHHHH
Q 021163 91 QRVLLKVSGEALAGDHTQNID------------------PKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNA 152 (316)
Q Consensus 91 k~iVIKiGGS~i~~~~~~~~~------------------~~vVIVhGGG~~a~G~~~l~~~gl~~~~~d~v~~la~~lna 152 (316)
+|+|||+|||++++++...++ .++|||||||++++|+... +++....|.++++++++|+
T Consensus 1 ~riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~~---~~~~~~~d~ig~~~~~ln~ 77 (231)
T PRK14558 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVELK---ELSPTRADQIGMLGTVINA 77 (231)
T ss_pred CeEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhcc---CCChHHHHHHHHHHHHHHH
Confidence 589999999999988543222 2689999999999887643 4666677889999999999
Q ss_pred HHHHHHHHhCCCCeEEEecccc-ccccchHHHHHHHHHHhCCCEEEEeCCCCCCCCCchHHHHHHHHhcCCcEEEEeccc
Q 021163 153 IFLQATMESIGIPTRVQTAFRM-SEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 231 (316)
Q Consensus 153 ~Lv~~~L~~~Gi~a~~l~~~~~-~~~~~~~i~~~l~~lL~~g~IPVv~g~~g~~~~~sD~iAa~LA~~L~Ad~LiilTDV 231 (316)
.+++.+|.++|++++.+..+.. .++ .++....+..+++.|.|||++|+.+.+++++|++|+++|.+++|+++++||||
T Consensus 78 ~~~~~~l~~~gi~a~~~~~~~~~~~~-~~~~~~~i~~ll~~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~tdV 156 (231)
T PRK14558 78 LYLKDIFEKSGLKAVIVSQIVNLPSV-EPINYDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKV 156 (231)
T ss_pred HHHHHHHHHcCCCeEEeccccccchh-hhhhHHHHHHHHHCCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEecC
Confidence 8888899999999976543311 111 11222456788999999999999888999999999999999999999999999
Q ss_pred CcccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEecC
Q 021163 232 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 306 (316)
Q Consensus 232 dGVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~~ 306 (316)
||||++||+.+|+|++|++|+++|+.++|..++|+.|+++|.++|++++|+|+++|+++.++++|+.+||+|.++
T Consensus 157 dGvy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~ 231 (231)
T PRK14558 157 DGIYDKDPKKFPDAKKIDHLTFSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVPD 231 (231)
T ss_pred CeeEccCCCCCCCCeEcccccHHHHHHcCcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCCC
Confidence 999999999999999999999999988888999999999999999999999999999999999999999999763
No 2
>PRK14556 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=4.8e-40 Score=303.49 Aligned_cols=217 Identities=43% Similarity=0.700 Sum_probs=195.6
Q ss_pred CCCeEEEEECccccccCCCCCCC------------------CCeEEEEChhHHHHHHHHcccCCCCccHHHHHHHHHHHH
Q 021163 89 KWQRVLLKVSGEALAGDHTQNID------------------PKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 150 (316)
Q Consensus 89 ~~k~iVIKiGGS~i~~~~~~~~~------------------~~vVIVhGGG~~a~G~~~l~~~gl~~~~~d~v~~la~~l 150 (316)
++||||+|+||+++..+....+| .++.||+|||.+++|...-...|+++...|+++|+++++
T Consensus 14 ~~~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~i 93 (249)
T PRK14556 14 KLKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMI 93 (249)
T ss_pred hhCEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHHH
Confidence 58999999999999876533333 267999999999999543211468898999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEeccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCCCCchHHHHHHHHhcCCcEEEEecc
Q 021163 151 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 230 (316)
Q Consensus 151 na~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~~g~~~~~sD~iAa~LA~~L~Ad~LiilTD 230 (316)
|+.+++.+|.+.|+++..++++....+.++|..+++.+.+++|.|+|+.|+.|+++.+||++|+++|.+++|+.|+++||
T Consensus 94 Nal~l~~~l~~~~~~~~v~sa~~~~~~~e~~~~~~~~~~l~~g~vvi~~gg~G~p~~StD~lAallA~~l~Ad~Lii~Td 173 (249)
T PRK14556 94 NALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKATT 173 (249)
T ss_pred HHHHHHHHHHHcCCCeEEeeccccCcCCCCCCHHHHHHHHhCCCEEEEECCCCCCcCCcHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999999999999999988877778887677888999999999999989999999999999999999999999999
Q ss_pred cCcccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEec
Q 021163 231 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 305 (316)
Q Consensus 231 VdGVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~ 305 (316)
|||||++||+++|+|+++++|++.|+.+.+..++|..|++.|.++|+|++|+|+++|++|.+++.|+.+||+|.-
T Consensus 174 VDGVYd~DP~~~p~A~~i~~I~~~e~~~~~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~~ 248 (249)
T PRK14556 174 VNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVTL 248 (249)
T ss_pred CCccCCCCCCCCCCceEeeEEchhhhcccchHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEEe
Confidence 999999999999999999999999887777789999999999999999999999999999999999999999963
No 3
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.3e-40 Score=297.03 Aligned_cols=217 Identities=61% Similarity=0.971 Sum_probs=200.0
Q ss_pred CCCCeEEEEECccccccCCCCCCC------------------CCeEEEEChhHHHHHHHHcccCCCCccHHHHHHHHHHH
Q 021163 88 YKWQRVLLKVSGEALAGDHTQNID------------------PKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATV 149 (316)
Q Consensus 88 ~~~k~iVIKiGGS~i~~~~~~~~~------------------~~vVIVhGGG~~a~G~~~l~~~gl~~~~~d~v~~la~~ 149 (316)
++.+++|+|+||+++..++...++ .++.||+|||.+++|+.... .|+++...|++++++++
T Consensus 3 ~~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~-~g~~r~~~D~mGmlaTv 81 (238)
T COG0528 3 PKYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAA-AGMDRVTADYMGMLATV 81 (238)
T ss_pred cceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHH-cCCchhhhhHHHHHHHH
Confidence 477899999999999997643333 25689999999999997555 38999999999999999
Q ss_pred HHHHHHHHHHHhCCCCeEEEeccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCCCCchHHHHHHHHhcCCcEEEEec
Q 021163 150 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 229 (316)
Q Consensus 150 lna~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~~g~~~~~sD~iAa~LA~~L~Ad~LiilT 229 (316)
+|+.+++.+|...|+++..|++.....+.++|...+..+.|++|.|+|+.|+.++|+.++|+.|+++|++++||.++..|
T Consensus 82 mNal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~~l~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~at 161 (238)
T COG0528 82 MNALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKAT 161 (238)
T ss_pred HHHHHHHHHHHhcCCcceecccccCccccCccCHHHHHHHHHcCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEec
Confidence 99999999999999999999988877677888878888999999999999999999999999999999999999999999
Q ss_pred c-cCcccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEec
Q 021163 230 N-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 305 (316)
Q Consensus 230 D-VdGVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~ 305 (316)
+ |||||++||+++|+|+.+++++|.|+.+.+..+||+.|+.+|++++||++|+|.++++++.+++.|+..||.|.+
T Consensus 162 n~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~~ 238 (238)
T COG0528 162 NKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVEP 238 (238)
T ss_pred cCCCceeCCCCCCCCCceecccCCHHHHHHhcCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEecC
Confidence 5 999999999999999999999999999989999999999999999999999999999999999999999999863
No 4
>PRK00358 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=1.2e-39 Score=298.01 Aligned_cols=213 Identities=65% Similarity=1.046 Sum_probs=182.7
Q ss_pred CeEEEEECccccccCCCCCC------------------CCCeEEEEChhHHHHHHHHcccCCCCccHHHHHHHHHHHHHH
Q 021163 91 QRVLLKVSGEALAGDHTQNI------------------DPKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNA 152 (316)
Q Consensus 91 k~iVIKiGGS~i~~~~~~~~------------------~~~vVIVhGGG~~a~G~~~l~~~gl~~~~~d~v~~la~~lna 152 (316)
+++|||+||++++++....+ ..++|||||||++++++... ..+++....++++++++++|+
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 79 (231)
T PRK00358 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGA-AAGMDRATADYMGMLATVMNA 79 (231)
T ss_pred CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHh-hcCCChhhHHHHHHHHHHHHH
Confidence 47899999999986532111 13689999999999888632 346666667889999999999
Q ss_pred HHHHHHHHhCCCCeEEEeccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCCCCchHHHHHHHHhcCCcEEEEecccC
Q 021163 153 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 232 (316)
Q Consensus 153 ~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~~g~~~~~sD~iAa~LA~~L~Ad~LiilTDVd 232 (316)
.+++.+|.++|+++..+++........++..+.+.++|++|.|||++++.+++++++|++|++||.+|+|+++++|||||
T Consensus 80 ~ll~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~A~~li~~tdVd 159 (231)
T PRK00358 80 LALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVD 159 (231)
T ss_pred HHHHHHHHHcCCCeEEechhhcccccCcccHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeeCcC
Confidence 88889999999999866655444334444445677899999999999887788899999999999999999999999999
Q ss_pred cccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163 233 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 304 (316)
Q Consensus 233 GVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~ 304 (316)
|||++||+.+|++++|++|+++|+.++|..++|++|+++|.++|++++|+|+++|++|.++++|+..||+|.
T Consensus 160 GVy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T PRK00358 160 GVYDADPKKDPDAKKYDRLTYDEVLEKGLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS 231 (231)
T ss_pred ceEcCCCCCCCCCEEeeEecHHHHHHcCCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCCEEeC
Confidence 999999999999999999999998877888899999999999999999999999999999999998999984
No 5
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=100.00 E-value=2.9e-38 Score=288.89 Aligned_cols=212 Identities=63% Similarity=0.982 Sum_probs=181.1
Q ss_pred eEEEEECccccccCCCC----C---C----------CCCeEEEEChhHHHHHHHHcccCCCCccHHHHHHHHHHHHHHHH
Q 021163 92 RVLLKVSGEALAGDHTQ----N---I----------DPKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIF 154 (316)
Q Consensus 92 ~iVIKiGGS~i~~~~~~----~---~----------~~~vVIVhGGG~~a~G~~~l~~~gl~~~~~d~v~~la~~lna~L 154 (316)
++|||+||+++++++.. . + ..+++||||||+++.++.... +++++...++++++++++|+.+
T Consensus 1 ~iViKiGGs~l~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l 79 (229)
T cd04239 1 RIVLKLSGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAA-RGMPRATADYIGMLATVMNALA 79 (229)
T ss_pred CEEEEECcceecCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHhh-cCCChhhHHHHHHHHHHHHHHH
Confidence 58999999999997420 0 1 137899999999987765432 4566667889999999999999
Q ss_pred HHHHHHhCCCCeEEEeccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCCCCchHHHHHHHHhcCCcEEEEecccCcc
Q 021163 155 LQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGV 234 (316)
Q Consensus 155 v~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~~g~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGV 234 (316)
++.+|.++|+++..+++.+.......+-.+.+..+++.|.|||++|+.|.++++||++|+++|.+|+|+++++|||||||
T Consensus 80 ~~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~l~~~l~~g~ipVi~g~~g~~~~~sD~~A~~lA~~l~a~~li~~tdVdGv 159 (229)
T cd04239 80 LQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDGV 159 (229)
T ss_pred HHHHHHHcCCCEEEeCHHHHhhhhccccHHHHHHHHhCCCEEEEeCccCCCCCCcHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 98899999999987666544333222222446788999999999999888999999999999999999999999999999
Q ss_pred cccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163 235 YDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 304 (316)
Q Consensus 235 yt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~ 304 (316)
|++||+.+|++++|++|+++|+.++..+++|+.|+++|.+.|++++|+|+++|+++.++++|+..||+|.
T Consensus 160 y~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 229 (229)
T cd04239 160 YDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229 (229)
T ss_pred cCCCCCCCCCCeEEeEEcHHHHHHHhcCCccHHHHHHHHHCCCeEEEECCCChhHHHHHHcCCCCCeEeC
Confidence 9999999999999999999999887668899999999999999999999999999999999998999884
No 6
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=100.00 E-value=8e-38 Score=287.01 Aligned_cols=214 Identities=57% Similarity=0.975 Sum_probs=183.9
Q ss_pred CCeEEEEECccccccCCCCCC------------------CCCeEEEEChhHHHHHHHHcccCCCCccHHHHHHHHHHHHH
Q 021163 90 WQRVLLKVSGEALAGDHTQNI------------------DPKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMN 151 (316)
Q Consensus 90 ~k~iVIKiGGS~i~~~~~~~~------------------~~~vVIVhGGG~~a~G~~~l~~~gl~~~~~d~v~~la~~ln 151 (316)
.+++|||+||++++++....+ ..++|||||||+++.++. +++++++....|+++++++++|
T Consensus 1 ~~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~-a~~~~~~~~~~d~~g~~~~~l~ 79 (233)
T TIGR02075 1 YKRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVS-AKELGIDRVTADYMGMLATVIN 79 (233)
T ss_pred CCEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHHH-HHhcCCCCccHHHHHHHHHHHH
Confidence 368999999999997322111 136899999999988886 4456676666789999999999
Q ss_pred HHHHHHHHHhCCCCeEEEeccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCCCCchHHHHHHHHhcCCcEEEEecc-
Q 021163 152 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN- 230 (316)
Q Consensus 152 a~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~~g~~~~~sD~iAa~LA~~L~Ad~LiilTD- 230 (316)
+.+++.+|.++|+++..+++.+.......|..+.+.+++++|.|||++++.|.++.+||++|++||..|+|++++++||
T Consensus 80 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VpV~~g~~g~~~~s~D~~a~~lA~~l~a~~li~~td~ 159 (233)
T TIGR02075 80 GLALRDALEKLGVKTRVLSAISMPQICESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNG 159 (233)
T ss_pred HHHHHHHHHhCCCCcEEeccccCCCCccccCHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeecc
Confidence 9998889999999998877765432222333355677999999999999888889999999999999999999999999
Q ss_pred cCcccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163 231 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 304 (316)
Q Consensus 231 VdGVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~ 304 (316)
|||||++||+.+|++++|++|+++|+.+.+...+|++++++|.++|++++|+|+.+|++|.++++|+.+||+|.
T Consensus 160 VdGvy~~dp~~~~~a~~i~~i~~~e~~~~~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 160 VDGVYTADPKKNKDAKKYETITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 233 (233)
T ss_pred cCeEEcCCCCCCCCCeECcEecHHHHHhcCHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence 99999999999999999999999998877777899999999999999999999999999999999999999984
No 7
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=100.00 E-value=7.7e-38 Score=286.68 Aligned_cols=213 Identities=69% Similarity=1.086 Sum_probs=180.1
Q ss_pred CeEEEEECccccccCCCCCC------------------CCCeEEEEChhHHHHHHHHcccCCCCccHHHHHHHHHHHHHH
Q 021163 91 QRVLLKVSGEALAGDHTQNI------------------DPKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNA 152 (316)
Q Consensus 91 k~iVIKiGGS~i~~~~~~~~------------------~~~vVIVhGGG~~a~G~~~l~~~gl~~~~~d~v~~la~~lna 152 (316)
|++|||+|||++++++...+ ..++|||||||++++++. .+++++.....|+++++++++|+
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~~~~~-~~~~~~~~~~~d~~g~~~~~~n~ 79 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGAS-AAEAGMDRATADYMGMLATVINA 79 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcccccch-hhhcCCCchhhhHHHHHHHHHHH
Confidence 57899999999998752221 136899999999876632 23456665567889999999999
Q ss_pred HHHHHHHHhCCCCeEEEeccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCCCCchHHHHHHHHhcCCcEEEEecccC
Q 021163 153 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 232 (316)
Q Consensus 153 ~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~~g~~~~~sD~iAa~LA~~L~Ad~LiilTDVd 232 (316)
.+++.+|+++|+++..+++.+.......+....+.++++.|.|||++++.|.+.+++|++|+++|.+|+|+++++|||||
T Consensus 80 ~ll~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~l~~~l~~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~a~~l~~~tdVd 159 (231)
T cd04254 80 LALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVD 159 (231)
T ss_pred HHHHHHHHHcCCCeEEEcHHHhhhhhcccCHHHHHHHHHCCCEEEEECCcCCCCCCcHHHHHHHHHHcCCCEEEEEeCCC
Confidence 88888999999999877776542221111124467889999999999888888999999999999999999999999999
Q ss_pred cccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163 233 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 304 (316)
Q Consensus 233 GVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~ 304 (316)
|||++||+.+|+++++++|+++|+.+.|...+|++++++|.++|++++|+|+++|++|.++++|+.+||+|.
T Consensus 160 Gvy~~dp~~~~~a~~i~~i~~~~~~~~~~~~~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T cd04254 160 GVYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231 (231)
T ss_pred EEEecCCCCCCCcEEeeEecHHHHHhcchhhhHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence 999999999999999999999998777888899999999999999999999999999999999999999984
No 8
>PRK14557 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=4e-37 Score=284.96 Aligned_cols=220 Identities=42% Similarity=0.740 Sum_probs=185.2
Q ss_pred CCCeEEEEECccccccCCCCCC------------------CCCeEEEEChhHHHHHHHHcccCCCCccHHHHHHHHHHHH
Q 021163 89 KWQRVLLKVSGEALAGDHTQNI------------------DPKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 150 (316)
Q Consensus 89 ~~k~iVIKiGGS~i~~~~~~~~------------------~~~vVIVhGGG~~a~G~~~l~~~gl~~~~~d~v~~la~~l 150 (316)
+++++|||+||+++.+++...+ ..+++||||||..++|+ .++.+++++...|.++++++++
T Consensus 3 ~~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~-~a~~~~~~~~~~D~ig~~g~~l 81 (247)
T PRK14557 3 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGH-LAEEWGIDRVEADNIGTLGTII 81 (247)
T ss_pred cccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHHHH-HHHhcCCChHHHHHHHHHHHHH
Confidence 5789999999999988642111 13689999999988875 3445677877889999999999
Q ss_pred HHHHHHHHHHhC-CCCeEEEeccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCCCCchHHHHHHHHhcCCcEEEEe-
Q 021163 151 NAIFLQATMESI-GIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKA- 228 (316)
Q Consensus 151 na~Lv~~~L~~~-Gi~a~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~~g~~~~~sD~iAa~LA~~L~Ad~Liil- 228 (316)
|+.+++.+|++. +..+..++........+++...++.+.|++|.|||++|+.|.++.++|++|+++|.+++|++++++
T Consensus 82 na~ll~~~l~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~l~~g~VvV~~G~~g~~~~stD~lAallA~~l~Ad~li~~t 161 (247)
T PRK14557 82 NSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAK 161 (247)
T ss_pred HHHHHHHHHHhhhCCceeEEeccccccccchhhHHHHHHHHhCCCEEEEECCcCCCccChHHHHHHHHHHhCCCEEEEec
Confidence 999999889874 776644444433333344444456677999999999999889999999999999999999999999
Q ss_pred cccCcccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEecCCC
Q 021163 229 TNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 308 (316)
Q Consensus 229 TDVdGVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~~~~ 308 (316)
||||||||+||+.+|+|++|++|++.|+...+..+++++|+++|.++|++++|+|+++|++|.++++|+.+||+|.+..+
T Consensus 162 tdVdGvY~~DP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~~ 241 (247)
T PRK14557 162 QGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDAS 241 (247)
T ss_pred CCcCEeECCCCCCCCCCEEeeEEChhhhcccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCcc
Confidence 59999999999999999999999999876556678899999999999999999999999999999999999999988765
Q ss_pred c
Q 021163 309 S 309 (316)
Q Consensus 309 ~ 309 (316)
.
T Consensus 242 ~ 242 (247)
T PRK14557 242 L 242 (247)
T ss_pred c
Confidence 4
No 9
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-35 Score=278.51 Aligned_cols=218 Identities=23% Similarity=0.368 Sum_probs=183.5
Q ss_pred CCCCCeEEEEECccccccCCCCCCCC-----------------CeEEEEChhHHHHHHHHcccCCCCccH--HHHHHHHH
Q 021163 87 SYKWQRVLLKVSGEALAGDHTQNIDP-----------------KVAIVVGGGNIFRGASAAGNSGLDRSS--ADYIGMLA 147 (316)
Q Consensus 87 ~~~~k~iVIKiGGS~i~~~~~~~~~~-----------------~vVIVhGGG~~a~G~~~l~~~gl~~~~--~d~v~~la 147 (316)
+.++++||||||.|++++.. ..++. .-||+|++|+++.|...++ +++++ ....|++|
T Consensus 3 ~~~~~riVvKiGSs~Lt~~~-g~l~~~~l~~l~~~ia~L~~~G~eVilVSSGAiaaG~~~Lg---~~~rp~~l~~kQA~A 78 (369)
T COG0263 3 LSSARRIVVKIGSSSLTDGT-GGLDRSKLEELVRQVAALHKAGHEVVLVSSGAIAAGRTRLG---LPKRPKTLAEKQAAA 78 (369)
T ss_pred CCcceEEEEEECcceeeCCC-CCcCHHHHHHHHHHHHHHHhCCCEEEEEccchhhhChhhcC---CCCCCcchHHHHHHH
Confidence 45789999999999999984 23331 2399999999999999886 54443 45678888
Q ss_pred HHHHHHH---HHHHHHhCCCCeEEEeccccccccc--hHHHH--HHHHHHhCCCEEEEeCCC-----CCCCCCchHHHHH
Q 021163 148 TVMNAIF---LQATMESIGIPTRVQTAFRMSEVAE--PYIRR--RAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAAL 215 (316)
Q Consensus 148 ~~lna~L---v~~~L~~~Gi~a~~l~~~~~~~~~~--~~i~~--~l~~lL~~g~IPVv~g~~-----g~~~~~sD~iAa~ 215 (316)
.+.|..| |.+.|..+|+++. |.+++..++.+ +|.|. .+..||+.|.|||||++| |..++|||++|++
T Consensus 79 AVGQ~~Lm~~y~~~f~~~g~~v~-QiLLTr~D~~~r~ry~Nar~Tl~~Ll~~gvVPIINENDtva~~EikfGDND~LsA~ 157 (369)
T COG0263 79 AVGQVRLMQLYEELFARYGIKVG-QILLTRDDFSDRRRYLNARNTLSALLELGVVPIINENDTVATEEIKFGDNDTLSAL 157 (369)
T ss_pred HhCHHHHHHHHHHHHHhcCCeee-EEEeehhhhhhHHHHHHHHHHHHHHHHCCceeeecCCCceeeeeeeecCCchHHHH
Confidence 8888887 5567999999875 99999888874 57663 367899999999999974 5789999999999
Q ss_pred HHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHH--HHhhC----------CCCCchHHHHHHHHhCCCcEEEEe
Q 021163 216 RCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ--EVTSK----------DLSVMDMTAITLCQENNIPVVVFN 283 (316)
Q Consensus 216 LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~--e~~~l----------G~~v~k~~Aa~~a~~~gI~v~I~n 283 (316)
+|.+++||.|+++||+||+||+||+.+|||++|++++.. |++.+ |.|..|+.|++.|.++|++++|++
T Consensus 158 VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~ 237 (369)
T COG0263 158 VAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIAS 237 (369)
T ss_pred HHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEec
Confidence 999999999999999999999999999999999998632 44432 335669999999999999999999
Q ss_pred CCCcchHHHHhcCCCcceEEecCCCc
Q 021163 284 LNQPGNIAKAIQGERVGTLIGGTWNS 309 (316)
Q Consensus 284 g~~p~~i~~~l~G~~~GT~I~~~~~~ 309 (316)
|.+|+.+.++++++..||+|.+....
T Consensus 238 g~~~~~i~~~~~~~~~GT~F~~~~~~ 263 (369)
T COG0263 238 GSKPDVILDALEGEAVGTLFEPQAKE 263 (369)
T ss_pred CCCcchHHHHHhCCCCccEEecCCcc
Confidence 99999999999999999999976543
No 10
>PTZ00489 glutamate 5-kinase; Provisional
Probab=100.00 E-value=1.3e-33 Score=263.64 Aligned_cols=216 Identities=17% Similarity=0.243 Sum_probs=167.9
Q ss_pred CCCCCeEEEEECccccccCCCCC------C---------CCCeEEEEChhHHHHHHHHcccCCCCccHHHHHHHHHHHHH
Q 021163 87 SYKWQRVLLKVSGEALAGDHTQN------I---------DPKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMN 151 (316)
Q Consensus 87 ~~~~k~iVIKiGGS~i~~~~~~~------~---------~~~vVIVhGGG~~a~G~~~l~~~gl~~~~~d~v~~la~~ln 151 (316)
.+++|++|||+|||++++++... + ..++|||+ ||+++.|+..++ +........+++++.+|
T Consensus 5 ~~~~~riVIKlG~Svit~~~~~~~~~~~~l~~~i~~l~~~~~vilVs-sGava~g~~~~~---~~~~~~~~~qa~aaiGq 80 (264)
T PTZ00489 5 LKSVKRIVVKVGSSILVDNQEIAAHRIEALCRFIADLQTKYEVILVT-SGAVAAGYTKKE---MDKSYVPNKQALASMGQ 80 (264)
T ss_pred hhcCCEEEEEeccceeeCCCCcCHHHHHHHHHHHHHHhcCCeEEEEe-cChHhcChhhcC---CCccccHHHHHHHHhCH
Confidence 34689999999999999865211 1 12456666 555888887553 33333344567777666
Q ss_pred HHH---HHHHHHhCCCCeEEEeccccccccc--hHHH--HHHHHHHhCCCEEEEeCCC-----CCCCCCchHHHHHHHHh
Q 021163 152 AIF---LQATMESIGIPTRVQTAFRMSEVAE--PYIR--RRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAE 219 (316)
Q Consensus 152 a~L---v~~~L~~~Gi~a~~l~~~~~~~~~~--~~i~--~~l~~lL~~g~IPVv~g~~-----g~~~~~sD~iAa~LA~~ 219 (316)
..| |...|.++|+++. |.+++..++.+ +|.+ ..+.++|++|.|||+++++ +..+++||.+|+++|.+
T Consensus 81 ~~L~~~y~~~f~~~~~~~a-qiLlt~~d~~~~~~~~n~~~~l~~lL~~g~VPIinend~~~~~e~~~gdnD~lAa~lA~~ 159 (264)
T PTZ00489 81 PLLMHMYYTELQKHGILCA-QMLLAAYDLDSRKRTINAHNTIEVLISHKVIPIINENDATALHELVFGDNDRLSALVAHH 159 (264)
T ss_pred HHHHHHHHHHHHhCCCeEE-EeeeeccccccchhhHHHHHHHHHHHHCCCEEEECCCCCcccceeEeCChHHHHHHHHHH
Confidence 554 5567999999996 66676666643 3433 4467899999999999964 34567999999999999
Q ss_pred cCCcEEEEecccCcccccCCCCCCCCce---eccccHHHHhhC---------CCCCchHHHHHHHHhCCCcEEEEeCCCc
Q 021163 220 INAEVVLKATNVDGVYDDNPRRNPNARL---LDTLTYQEVTSK---------DLSVMDMTAITLCQENNIPVVVFNLNQP 287 (316)
Q Consensus 220 L~Ad~LiilTDVdGVyt~dP~~~p~akl---I~~It~~e~~~l---------G~~v~k~~Aa~~a~~~gI~v~I~ng~~p 287 (316)
++|++|+++|||||||++||+.+|+|++ +++++.+++... |.|..|++|++.|.+.|++++|+||++|
T Consensus 160 l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~ 239 (264)
T PTZ00489 160 FKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQFLLERGGKMYLSSGFHL 239 (264)
T ss_pred hCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence 9999999999999999999999999987 778888765321 4567799999999999999999999999
Q ss_pred chHHHHhcCC--CcceEEecCC
Q 021163 288 GNIAKAIQGE--RVGTLIGGTW 307 (316)
Q Consensus 288 ~~i~~~l~G~--~~GT~I~~~~ 307 (316)
+.|.+++.|+ ..||+|.+.-
T Consensus 240 ~~i~~~l~g~~~~~GT~~~~~~ 261 (264)
T PTZ00489 240 EKARDFLIGGSHEIGTLFYPRV 261 (264)
T ss_pred hHHHHHHcCCCCCCceEEeecC
Confidence 9999999875 3899997743
No 11
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=100.00 E-value=1.9e-33 Score=263.06 Aligned_cols=216 Identities=22% Similarity=0.304 Sum_probs=164.7
Q ss_pred CCCCCeEEEEECccccccCCCCCCC------------------CCeEEE-EChhHHHHHHHHcccCCCCccH--HHHHHH
Q 021163 87 SYKWQRVLLKVSGEALAGDHTQNID------------------PKVAIV-VGGGNIFRGASAAGNSGLDRSS--ADYIGM 145 (316)
Q Consensus 87 ~~~~k~iVIKiGGS~i~~~~~~~~~------------------~~vVIV-hGGG~~a~G~~~l~~~gl~~~~--~d~v~~ 145 (316)
..+++++|||+||+++++++. .++ .++||| +|+|++ |+..++.+..+... .+...+
T Consensus 6 ~~~~~~iViK~Ggs~l~~~~~-~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~--g~~~l~~~~~~~~~~~~~a~aa 82 (266)
T PRK12314 6 LENAKRIVIKVGSSTLSYENG-KINLERIEQLVFVISDLMNKGKEVILVSSGAIGA--GLTKLKLDKRPTSLAEKQALAA 82 (266)
T ss_pred HhhCCEEEEEeCCCeeeCCCC-CcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccc--cceeeccccCCCCHHHHHHHHH
Confidence 345689999999999997642 221 134443 556666 77766544433222 233333
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEeccccccccch--HHH--HHHHHHHhCCCEEEEeCCC-----CCC--CCCchHHHH
Q 021163 146 LATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YIR--RRAVRHLEKGRVVIFAAGT-----GNP--FFTTDTAAA 214 (316)
Q Consensus 146 la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~--~i~--~~l~~lL~~g~IPVv~g~~-----g~~--~~~sD~iAa 214 (316)
.++.....+|+.+|+++|+++. |..++..++.++ +.+ ..+..+++.|+|||+++++ +.. +++||++|+
T Consensus 83 ~Gq~~l~~~~~~~~~~~g~~~~-q~llT~~~~~~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa 161 (266)
T PRK12314 83 VGQPELMSLYSKFFAEYGIVVA-QILLTRDDFDSPKSRANVKNTFESLLELGILPIVNENDAVATDEIDTKFGDNDRLSA 161 (266)
T ss_pred HhHHHHHHHHHHHHHHcCCeEE-EEEEecccccchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeccccceecchHHHHH
Confidence 4555555678889999999975 667766666543 222 3467889999999999742 222 889999999
Q ss_pred HHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccH--HHHhhC----------CCCCchHHHHHHHHhCCCcEEEE
Q 021163 215 LRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVTSK----------DLSVMDMTAITLCQENNIPVVVF 282 (316)
Q Consensus 215 ~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~--~e~~~l----------G~~v~k~~Aa~~a~~~gI~v~I~ 282 (316)
+||.+++|++|+|+|||||||++||+.+|++++|++|++ .+..+. |.|+.|++|++.|.++|++++|+
T Consensus 162 ~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~ 241 (266)
T PRK12314 162 IVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLA 241 (266)
T ss_pred HHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEE
Confidence 999999999999999999999999999999999999975 333221 35778999999999999999999
Q ss_pred eCCCcchHHHHhcCCCcceEEecC
Q 021163 283 NLNQPGNIAKAIQGERVGTLIGGT 306 (316)
Q Consensus 283 ng~~p~~i~~~l~G~~~GT~I~~~ 306 (316)
||++|+.|.++++|+.+||+|.+.
T Consensus 242 ~g~~~~~i~~~l~g~~~GT~i~~~ 265 (266)
T PRK12314 242 NGFNPSDILDFLEGESIGTLFAPK 265 (266)
T ss_pred cCCCchHHHHHHcCCCCceEEccC
Confidence 999999999999999899999764
No 12
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=100.00 E-value=5.7e-33 Score=270.18 Aligned_cols=220 Identities=22% Similarity=0.321 Sum_probs=169.2
Q ss_pred CCCeEEEEECccccccCCCCCCC------------------CCeEEEEChhHHHHHHHHcccCCCCccHHHHHHHHHHHH
Q 021163 89 KWQRVLLKVSGEALAGDHTQNID------------------PKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 150 (316)
Q Consensus 89 ~~k~iVIKiGGS~i~~~~~~~~~------------------~~vVIVhGGG~~a~G~~~l~~~gl~~~~~d~v~~la~~l 150 (316)
+++++|||+||+++++.+. .++ .++||||||| ++.|...++...-+ + ....++++...
T Consensus 4 ~~kriVIKiGgs~L~~~~~-~l~~~~i~~la~~I~~l~~~G~~vvlVsSGa-va~G~~~l~~~~~~-~-~~~~qalaavG 79 (368)
T PRK13402 4 NWKRIVVKVGSSLLTPHHQ-GCSSHYLLGLVQQIVYLKDQGHQVVLVSSGA-VAAGYHKLGFIDRP-S-VPEKQAMAAAG 79 (368)
T ss_pred CCcEEEEEEchhhccCCCC-CcCHHHHHHHHHHHHHHHHCCCEEEEEeCCh-hhcCccccCCCCCC-C-ccHHHHHHHhh
Confidence 5689999999999997532 121 2567777776 66676544421111 1 12234444444
Q ss_pred HHH---HHHHHHHhCCCCeEEEeccccccccc--hHH--HHHHHHHHhCCCEEEEeCC-----CCCCCCCchHHHHHHHH
Q 021163 151 NAI---FLQATMESIGIPTRVQTAFRMSEVAE--PYI--RRRAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALRCA 218 (316)
Q Consensus 151 na~---Lv~~~L~~~Gi~a~~l~~~~~~~~~~--~~i--~~~l~~lL~~g~IPVv~g~-----~g~~~~~sD~iAa~LA~ 218 (316)
+.. +|+.+|+++|+++. |.+++..++.+ +|. +..+..+|+.|.|||++++ ++..+++||++|+++|.
T Consensus 80 q~~l~~~~~~~f~~~g~~~a-qvLlT~~d~~~~~~y~n~~~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~ 158 (368)
T PRK13402 80 QGLLMATWSKLFLSHGFPAA-QLLLTHGDLRDRERYINIRNTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAA 158 (368)
T ss_pred HHHHHHHHHHHHHHCCCeEE-EEEEecchhhhHHHHHHHHHHHHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHH
Confidence 443 46778999999996 55666666642 454 3456789999999999975 34678999999999999
Q ss_pred hcCCcEEEEecccCcccccCCCCCCCCceeccccH--HHHhhC----------CCCCchHHHHHHHHhCCCcEEEEeCCC
Q 021163 219 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVTSK----------DLSVMDMTAITLCQENNIPVVVFNLNQ 286 (316)
Q Consensus 219 ~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~--~e~~~l----------G~~v~k~~Aa~~a~~~gI~v~I~ng~~ 286 (316)
+++|+.|++||||||||++||+.+|++++|++|++ +|+.++ |.|..|++|++.|.++|++++|+|+++
T Consensus 159 ~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~ 238 (368)
T PRK13402 159 LADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFT 238 (368)
T ss_pred HhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCC
Confidence 99999999999999999999999999999999986 555432 235568999999999999999999999
Q ss_pred cchHHHHhcCCCcceEEecCCCccccc
Q 021163 287 PGNIAKAIQGERVGTLIGGTWNSTVSK 313 (316)
Q Consensus 287 p~~i~~~l~G~~~GT~I~~~~~~~~~~ 313 (316)
|+.|.++++|+..||+|.+..++..+|
T Consensus 239 ~~~l~~~l~g~~~GT~i~~~~~~~~~r 265 (368)
T PRK13402 239 ADIFNQLLKGQNPGTYFTPEEKPMQEK 265 (368)
T ss_pred chHHHHHhcCCCCceEEecCCCCccHH
Confidence 999999999999999999877766555
No 13
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=100.00 E-value=3.1e-33 Score=263.85 Aligned_cols=216 Identities=19% Similarity=0.212 Sum_probs=166.7
Q ss_pred CCCCCeEEEEECccccccCCCCCCCC-----------------CeEEEEChhHHHHHHHHcccCCC-C------------
Q 021163 87 SYKWQRVLLKVSGEALAGDHTQNIDP-----------------KVAIVVGGGNIFRGASAAGNSGL-D------------ 136 (316)
Q Consensus 87 ~~~~k~iVIKiGGS~i~~~~~~~~~~-----------------~vVIVhGGG~~a~G~~~l~~~gl-~------------ 136 (316)
..++|++|||+|||++++++...++. .-||+|++|+.+.|+.+++.++. .
T Consensus 5 ~~~~~~iVvKiGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~~~~~~~~~~~g~~~ 84 (284)
T cd04256 5 LKHAKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQL 84 (284)
T ss_pred hccCCEEEEEeCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccccccchhhhcccccc
Confidence 34679999999999999985322221 22555555555559988865432 0
Q ss_pred ---ccHHHHHHHHHHHHHHHH---HHHHHHhCCCCeEEEeccccccccchH--HH--HHHHHHHhCCCEEEEeCCCC---
Q 021163 137 ---RSSADYIGMLATVMNAIF---LQATMESIGIPTRVQTAFRMSEVAEPY--IR--RRAVRHLEKGRVVIFAAGTG--- 203 (316)
Q Consensus 137 ---~~~~d~v~~la~~lna~L---v~~~L~~~Gi~a~~l~~~~~~~~~~~~--i~--~~l~~lL~~g~IPVv~g~~g--- 203 (316)
+......+++++..|..| |++.|..+|+++. |..++..++.++. .+ ..+..+|+.|+|||+++++.
T Consensus 85 ~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~~~~~-q~llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVi~~nD~v~~ 163 (284)
T cd04256 85 KDMPQMELDGRACAAVGQSGLMALYEAMFTQYGITVA-QVLVTKPDFYDEQTRRNLNGTLEELLRLNIIPIINTNDAVSP 163 (284)
T ss_pred cCCcchhHHHHHHHHcccHHHHHHHHHHHHHcCCcHH-HeeeeccccccHHHHHHHHHHHHHHHHCCCEEEEeCCCcccc
Confidence 112233577888888776 5667999999986 6677777776533 22 34567999999999997421
Q ss_pred -----------CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC----------CCC
Q 021163 204 -----------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----------DLS 262 (316)
Q Consensus 204 -----------~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l----------G~~ 262 (316)
+.++++|++|+++|.+++|++|+++|||||||++||+ +|++++|++++..+..++ |.|
T Consensus 164 ~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM 242 (284)
T cd04256 164 PPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGM 242 (284)
T ss_pred cccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCc
Confidence 2457999999999999999999999999999999996 689999999988765432 345
Q ss_pred CchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163 263 VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 304 (316)
Q Consensus 263 v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~ 304 (316)
..|++|+..|.++|++++|+||++|++|.++++|+.+||+|.
T Consensus 243 ~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~~ 284 (284)
T cd04256 243 EAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFFT 284 (284)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEeC
Confidence 559999999999999999999999999999999999999983
No 14
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=100.00 E-value=5.2e-33 Score=253.04 Aligned_cols=198 Identities=32% Similarity=0.521 Sum_probs=164.9
Q ss_pred eEEEEECccccccCCC-CC-------C-----CCCeEEEEChhHHHHHHH-HcccCCCCccHHHHHHHHHHHHHHHHHHH
Q 021163 92 RVLLKVSGEALAGDHT-QN-------I-----DPKVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQA 157 (316)
Q Consensus 92 ~iVIKiGGS~i~~~~~-~~-------~-----~~~vVIVhGGG~~a~G~~-~l~~~gl~~~~~d~v~~la~~lna~Lv~~ 157 (316)
|+|||+|||+++++.. .. + ..+++||||||++++.+. ..+.++++....|++++.++++|..+++.
T Consensus 1 ~iViKlGGs~l~~~~~~~~i~~~~~~i~~~~~~~~iiiV~GgG~~a~~~~~~~~~~~~~~~~~d~~g~~~~~ln~~~~~~ 80 (221)
T cd04253 1 RIVISLGGSVLAPEKDADFIKEYANVLRKISDGHKVAVVVGGGRLAREYISVARKLGASEAFLDEIGIMATRLNARLLIA 80 (221)
T ss_pred CEEEEeccceeCCCCChHHHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHHHcCCCHHHHHHhcCHHHHHHHHHHHH
Confidence 5899999999987520 00 1 147899999999988874 33334566666788999999999999986
Q ss_pred HHHhCCCCeEEEeccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCCCCchHHHHHHHHhcCCcEEEEecccCccccc
Q 021163 158 TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDD 237 (316)
Q Consensus 158 ~L~~~Gi~a~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~~g~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~ 237 (316)
++. +|++++... .+.+.++|+.|.+||++|+. +..++|++|+++|.+|+|++++++|||||||++
T Consensus 81 ~l~-~~~~~~~~~------------~~~~~~~l~~g~vpv~~G~~--~~~s~D~~a~~lA~~l~a~~li~~tdVdGVy~~ 145 (221)
T cd04253 81 ALG-DAYPPVPTS------------YEEALEAMFTGKIVVMGGTE--PGQSTDAVAALLAERLGADLLINATNVDGVYSK 145 (221)
T ss_pred HHh-cCCCcCCCC------------HHHHHHHHHcCCeEEEECCC--CCCccHHHHHHHHHHcCCCEEEEEeCCCeeECC
Confidence 665 888765321 13456789999999999874 467999999999999999999999999999999
Q ss_pred CCCCCCCCceeccccHHHHhhC--------CC-CCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163 238 NPRRNPNARLLDTLTYQEVTSK--------DL-SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 304 (316)
Q Consensus 238 dP~~~p~aklI~~It~~e~~~l--------G~-~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~ 304 (316)
||+.+|++++|++|+++|+.++ |. +.+|+.+++++.++|++++|+|+++|++|.++++|+.+||+|.
T Consensus 146 dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~I~ 221 (221)
T cd04253 146 DPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTIIE 221 (221)
T ss_pred CCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeEeC
Confidence 9999999999999999988764 22 5689999999999999999999999999999999999999984
No 15
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=100.00 E-value=3.6e-32 Score=247.25 Aligned_cols=198 Identities=33% Similarity=0.521 Sum_probs=164.5
Q ss_pred EEEEECccccccCC-CCC-------C----C-CCeEEEEChhHHHHHHH-HcccCCCCccHHHHHHHHHHHHHHHHHHHH
Q 021163 93 VLLKVSGEALAGDH-TQN-------I----D-PKVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQAT 158 (316)
Q Consensus 93 iVIKiGGS~i~~~~-~~~-------~----~-~~vVIVhGGG~~a~G~~-~l~~~gl~~~~~d~v~~la~~lna~Lv~~~ 158 (316)
+|||+|||+++++. ... + + .+++||||||.+++.+. ..+..++.....|++++.++++|+.+++..
T Consensus 1 iViKlGGs~l~~~~~~~~i~~i~~~i~~~~~~~~viiV~ggG~~a~~~~~~~~~~~~~~~~~~~~g~~~~~ln~~~l~~l 80 (221)
T TIGR02076 1 IVISLGGSVLSPEIDAEFIKEFANILRKLSDEHKVGVVVGGGKTARRYIGVARELGASETFLDEIGIDATRLNAMLLIAA 80 (221)
T ss_pred CEEEechhhcCCCCCHHHHHHHHHHHHHHHhCCeEEEEECCcHHHHHHHHHHHHcCCCHHHHHHhhhHHHHHHHHHHHHH
Confidence 58999999999863 001 1 1 47899999999987773 333345666677899999999999999878
Q ss_pred HHhCCCCeEEEeccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCCCCchHHHHHHHHhcCCcEEEEecccCcccccC
Q 021163 159 MESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN 238 (316)
Q Consensus 159 L~~~Gi~a~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~~g~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~d 238 (316)
|...++++...+. ....++++.|.+||++|+. +..++|++|+++|.+++|++++++|||||||++|
T Consensus 81 l~~~~~~~~~~~~------------~~~~~~l~~g~ipv~~G~~--~~~s~D~~A~~lA~~l~A~~li~ltdVdGvy~~d 146 (221)
T TIGR02076 81 LGDDAYPKVPENF------------EEALEAMSLGKIVVMGGTH--PGHTTDAVAALLAEFSKADLLINATNVDGVYDKD 146 (221)
T ss_pred HHhcCCCCcCCCH------------HHHHHHHHcCCEEEEcCCC--CCCCcHHHHHHHHHHcCCCEEEEEeCCCcccCCC
Confidence 8777888753211 2345678889999999874 6689999999999999999999999999999999
Q ss_pred CCCCCCCceeccccHHHHhhC--------C-CCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163 239 PRRNPNARLLDTLTYQEVTSK--------D-LSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 304 (316)
Q Consensus 239 P~~~p~aklI~~It~~e~~~l--------G-~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~ 304 (316)
|+.+|++++|++|+++|+.++ | .+.+|+.|++.+.+.+++++|+|+++|+++.++++|+..||.|.
T Consensus 147 P~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 221 (221)
T TIGR02076 147 PKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTIIE 221 (221)
T ss_pred CCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEeC
Confidence 999999999999999988764 2 23679999999999999999999999999999999998999984
No 16
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=100.00 E-value=8.6e-32 Score=262.70 Aligned_cols=220 Identities=24% Similarity=0.358 Sum_probs=167.4
Q ss_pred CCCCeEEEEECccccccCCCCCC------------------CCCeEEEEChhHHHHHHHHcccCCCCcc--HHHHHHHHH
Q 021163 88 YKWQRVLLKVSGEALAGDHTQNI------------------DPKVAIVVGGGNIFRGASAAGNSGLDRS--SADYIGMLA 147 (316)
Q Consensus 88 ~~~k~iVIKiGGS~i~~~~~~~~------------------~~~vVIVhGGG~~a~G~~~l~~~gl~~~--~~d~v~~la 147 (316)
.+++++|||+||++++++.. .+ ..++|||||| ++..+...++ +... .....++++
T Consensus 6 ~~~~~iVIKiGGs~l~~~~~-~l~~~~i~~la~~I~~l~~~g~~vViV~sG-ai~~g~~~l~---l~~~~~~~~~~qa~a 80 (372)
T PRK05429 6 SDARRIVVKVGSSLLTGGGG-GLDRARIAELARQIAALRAAGHEVVLVSSG-AVAAGRERLG---LPERPKTLAEKQAAA 80 (372)
T ss_pred hhCCEEEEEeChhhccCCCC-CcCHHHHHHHHHHHHHHHHCCCeEEEEccc-HhhhhHhhcC---CCCCCCchHHHHHHH
Confidence 36789999999999998632 11 1257888854 6766665554 3222 122334555
Q ss_pred HHHHHH---HHHHHHHhCCCCeEEEeccccccccc--hHHH--HHHHHHHhCCCEEEEeCCC-----CCCCCCchHHHHH
Q 021163 148 TVMNAI---FLQATMESIGIPTRVQTAFRMSEVAE--PYIR--RRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAAL 215 (316)
Q Consensus 148 ~~lna~---Lv~~~L~~~Gi~a~~l~~~~~~~~~~--~~i~--~~l~~lL~~g~IPVv~g~~-----g~~~~~sD~iAa~ 215 (316)
...|.. +|.++|.++|+++. +.+.+..++.. .|+| ..+..+++.|.|||+++++ +..+++||++|++
T Consensus 81 avGq~~L~~~~~~~l~~~gi~~~-qil~t~~d~~~~~~~ln~~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~Aa~ 159 (372)
T PRK05429 81 AVGQSRLMQAYEELFARYGITVA-QILLTRDDLEDRERYLNARNTLRTLLELGVVPIINENDTVATDEIKFGDNDTLSAL 159 (372)
T ss_pred HHhHHHHHHHHHHHHHHCCCCEE-EEEeehhHhhhhhHhhhHHHHHHHHHHCCCEEEEcCCCccceecccccChHHHHHH
Confidence 444433 46778999999986 44455444432 3554 3356789999999999743 3468899999999
Q ss_pred HHHhcCCcEEEEecccCcccccCCCCCCCCceeccccH--HHHhhC----------CCCCchHHHHHHHHhCCCcEEEEe
Q 021163 216 RCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVTSK----------DLSVMDMTAITLCQENNIPVVVFN 283 (316)
Q Consensus 216 LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~--~e~~~l----------G~~v~k~~Aa~~a~~~gI~v~I~n 283 (316)
||.+++|++|+|+|||||||++||+.+|++++|++|++ +|+.++ |.|..|++|+..|.++|++++|+|
T Consensus 160 lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~ 239 (372)
T PRK05429 160 VANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIAS 239 (372)
T ss_pred HHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEc
Confidence 99999999999999999999999999999999999987 455432 235669999999999999999999
Q ss_pred CCCcchHHHHhcCCCcceEEecCCCccccc
Q 021163 284 LNQPGNIAKAIQGERVGTLIGGTWNSTVSK 313 (316)
Q Consensus 284 g~~p~~i~~~l~G~~~GT~I~~~~~~~~~~ 313 (316)
+++|+++.++++|+..||+|.+..++..+|
T Consensus 240 g~~~~~l~~~l~g~~~GT~i~~~~~~~~~~ 269 (372)
T PRK05429 240 GREPDVLLRLLAGEAVGTLFLPQEKPLSAR 269 (372)
T ss_pred CCCccHHHHHhcCCCCCEEEeeCCccchHH
Confidence 999999999999999999999877665554
No 17
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=100.00 E-value=8.4e-32 Score=249.57 Aligned_cols=210 Identities=24% Similarity=0.390 Sum_probs=157.1
Q ss_pred eEEEEECccccccCCCC----CC-------------CCCeEEEECh-hHHHHHHHHcccCCCCcc--HHHHHHHHHHHHH
Q 021163 92 RVLLKVSGEALAGDHTQ----NI-------------DPKVAIVVGG-GNIFRGASAAGNSGLDRS--SADYIGMLATVMN 151 (316)
Q Consensus 92 ~iVIKiGGS~i~~~~~~----~~-------------~~~vVIVhGG-G~~a~G~~~l~~~gl~~~--~~d~v~~la~~ln 151 (316)
++|||+||+++++++.. .+ ..++|||||| |++ |+..++...-... ..+.+...++...
T Consensus 1 ~iViK~GGs~i~~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~--g~~~~~~~~~~~~~~~~~~~~~~Gq~~l 78 (251)
T cd04242 1 RIVVKVGSSLLTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAA--GRQRLGLEKRPKTLPEKQALAAVGQSLL 78 (251)
T ss_pred CEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhh--ChhhhccCcCCCchhHHHHHHHHhHHHH
Confidence 58999999999998621 11 1257888864 555 5544431111111 1233333444555
Q ss_pred HHHHHHHHHhCCCCeEEEeccccccccc--hHHH--HHHHHHHhCCCEEEEeCCC-----CCCCCCchHHHHHHHHhcCC
Q 021163 152 AIFLQATMESIGIPTRVQTAFRMSEVAE--PYIR--RRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINA 222 (316)
Q Consensus 152 a~Lv~~~L~~~Gi~a~~l~~~~~~~~~~--~~i~--~~l~~lL~~g~IPVv~g~~-----g~~~~~sD~iAa~LA~~L~A 222 (316)
..+++.+|+++|+++. +...+..++.. .+.+ ..+..++++|+|||+++++ +..++++|++|++||.+|+|
T Consensus 79 ~~~~~~~l~~~Gi~~~-q~l~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D~~A~~lA~~l~A 157 (251)
T cd04242 79 MALYEQLFAQYGIKVA-QILLTRDDFEDRKRYLNARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAGLVNA 157 (251)
T ss_pred HHHHHHHHHHcCCeEE-EEEEehhHhcchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeeccccCChHHHHHHHHHHcCC
Confidence 5567789999999985 44454444432 2222 3356789999999999742 24678999999999999999
Q ss_pred cEEEEecccCcccccCCCCCCCCceecccc--HHHHhhC----------CCCCchHHHHHHHHhCCCcEEEEeCCCcchH
Q 021163 223 EVVLKATNVDGVYDDNPRRNPNARLLDTLT--YQEVTSK----------DLSVMDMTAITLCQENNIPVVVFNLNQPGNI 290 (316)
Q Consensus 223 d~LiilTDVdGVyt~dP~~~p~aklI~~It--~~e~~~l----------G~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i 290 (316)
++|+|||||||||++||+.+|++++|++|+ ++|+.++ |.|..|++|+..+.++|++++|+|+++|++|
T Consensus 158 d~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~~~~i 237 (251)
T cd04242 158 DLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDVL 237 (251)
T ss_pred CEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCCCCHH
Confidence 999999999999999999999999999999 8887653 2344588999999999999999999999999
Q ss_pred HHHhcCCCcceEEe
Q 021163 291 AKAIQGERVGTLIG 304 (316)
Q Consensus 291 ~~~l~G~~~GT~I~ 304 (316)
.++++|+..||+|.
T Consensus 238 ~~~l~g~~~GT~i~ 251 (251)
T cd04242 238 LDILAGEAVGTLFL 251 (251)
T ss_pred HHHHcCCCCCeEeC
Confidence 99999999999983
No 18
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=100.00 E-value=1.8e-32 Score=251.18 Aligned_cols=209 Identities=26% Similarity=0.383 Sum_probs=167.2
Q ss_pred EEEECccccccCCCC-C----------CCCCeEEEEChhHHHHHHH-Hcc-------cCCCCccHHHHHHHHHHHHHHHH
Q 021163 94 LLKVSGEALAGDHTQ-N----------IDPKVAIVVGGGNIFRGAS-AAG-------NSGLDRSSADYIGMLATVMNAIF 154 (316)
Q Consensus 94 VIKiGGS~i~~~~~~-~----------~~~~vVIVhGGG~~a~G~~-~l~-------~~gl~~~~~d~v~~la~~lna~L 154 (316)
||||||+++++++.. . ...++|||||||.++.... ..+ ..+.+....+.+.+.++.++..+
T Consensus 1 ViKiGGs~l~~~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
T cd02115 1 VIKFGGSSVSSEERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMSNLL 80 (248)
T ss_pred CEeeCccccCCHHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 799999999875311 1 2358999999999975432 211 12233444566667777888888
Q ss_pred HHHHHHhCCCCeEEEecccccccc-------c--hHHHHHHHHHHhCCCEEEEeCCCC--------CCCCCchHHHHHHH
Q 021163 155 LQATMESIGIPTRVQTAFRMSEVA-------E--PYIRRRAVRHLEKGRVVIFAAGTG--------NPFFTTDTAAALRC 217 (316)
Q Consensus 155 v~~~L~~~Gi~a~~l~~~~~~~~~-------~--~~i~~~l~~lL~~g~IPVv~g~~g--------~~~~~sD~iAa~LA 217 (316)
+.++|.++|+++..+.+.+..... . .+..+.+.++|+.|.|||++|+.+ .+++++|++|+++|
T Consensus 81 ~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD~~A~~lA 160 (248)
T cd02115 81 IAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLA 160 (248)
T ss_pred HHHHHHhCCCCeEEEchHHcCeEeCCCCCcccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCHHHHHHHHH
Confidence 888999999999877765432211 0 111244678899999999999732 35789999999999
Q ss_pred HhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHh
Q 021163 218 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 294 (316)
Q Consensus 218 ~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l 294 (316)
.+|+|++|++||||||||++||+.+|++++|++|+++|+.++ |.|++|++++.++.++|++++|+|+++|+++ +++
T Consensus 161 ~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l-~~~ 239 (248)
T cd02115 161 AALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGAL-ALF 239 (248)
T ss_pred HHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCcccc-ccc
Confidence 999999999999999999999999999999999999888764 7889999999999999999999999999999 999
Q ss_pred cCCCcceEE
Q 021163 295 QGERVGTLI 303 (316)
Q Consensus 295 ~G~~~GT~I 303 (316)
.++..||+|
T Consensus 240 ~~~~~GT~I 248 (248)
T cd02115 240 TPDGGGTLI 248 (248)
T ss_pred CCCCCCCCC
Confidence 998899976
No 19
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.98 E-value=2.3e-31 Score=258.88 Aligned_cols=218 Identities=27% Similarity=0.393 Sum_probs=166.5
Q ss_pred CeEEEEECccccccCCCC-C---C-------------CCCeEEEEChhHHHHHHHHcccCCCCccH--HHHHHHHHHHHH
Q 021163 91 QRVLLKVSGEALAGDHTQ-N---I-------------DPKVAIVVGGGNIFRGASAAGNSGLDRSS--ADYIGMLATVMN 151 (316)
Q Consensus 91 k~iVIKiGGS~i~~~~~~-~---~-------------~~~vVIVhGGG~~a~G~~~l~~~gl~~~~--~d~v~~la~~ln 151 (316)
+++|||+||+++++++.. . + ..++||||||| .+.|+..++ ++.+. ....++++...+
T Consensus 1 ~riVIKiGgs~l~~~~~~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~-~~~g~~~lg---~~~~~~~l~~~qa~aa~Gq 76 (363)
T TIGR01027 1 QRIVVKVGSSSLTGSSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGA-IAAGFEALG---LPERPKTLAEKQALAAVGQ 76 (363)
T ss_pred CeEEEEeccceEeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeCcH-HhcCccccC---CCCCccchHHHHHHHHhCh
Confidence 479999999999987531 0 1 13678999976 444555443 43322 223455555555
Q ss_pred HH---HHHHHHHhCCCCeEEEeccccccccc--hHHHH--HHHHHHhCCCEEEEeCCC-----CCCCCCchHHHHHHHHh
Q 021163 152 AI---FLQATMESIGIPTRVQTAFRMSEVAE--PYIRR--RAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAE 219 (316)
Q Consensus 152 a~---Lv~~~L~~~Gi~a~~l~~~~~~~~~~--~~i~~--~l~~lL~~g~IPVv~g~~-----g~~~~~sD~iAa~LA~~ 219 (316)
.. ++...|.++|+++. |.+.+..++.+ .|+|. .+..+|++|.|||++.++ +..++++|++|+++|.+
T Consensus 77 ~~l~~~~~~~l~~~Gi~~a-qillt~~d~~~~~~~lna~~~i~~Ll~~g~iPVi~end~v~~~~l~~gd~D~lAa~lA~~ 155 (363)
T TIGR01027 77 VRLMQLYEQLFSQYGIKVA-QILLTRADFSDRERYLNARNTLEALLELGVVPIINENDTVATEEIKFGDNDTLSALVAIL 155 (363)
T ss_pred HHHHHHHHHHHHHcCCeEE-EEEEeccchhhHHHHHHHHHHHHHHHhCCCEEEEeCCCceeeeecCcCChHHHHHHHHHH
Confidence 44 46678999999985 55666655543 45543 356789999999999642 35678999999999999
Q ss_pred cCCcEEEEecccCcccccCCCCCCCCceeccccHH--HHhh--------C--CCCCchHHHHHHHHhCCCcEEEEeCCCc
Q 021163 220 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ--EVTS--------K--DLSVMDMTAITLCQENNIPVVVFNLNQP 287 (316)
Q Consensus 220 L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~--e~~~--------l--G~~v~k~~Aa~~a~~~gI~v~I~ng~~p 287 (316)
++|++|+|+|||||||++||+.+|++++|++|++. ++.+ . |.|.+|++|++.|.+.|++++|+|+++|
T Consensus 156 l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~ 235 (363)
T TIGR01027 156 VGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKP 235 (363)
T ss_pred cCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 99999999999999999999999999999999853 3322 1 3356689999999999999999999999
Q ss_pred chHHHHhcCCCcceEEecCCCccccc
Q 021163 288 GNIAKAIQGERVGTLIGGTWNSTVSK 313 (316)
Q Consensus 288 ~~i~~~l~G~~~GT~I~~~~~~~~~~ 313 (316)
+++.++++|+..||+|.+..++..+|
T Consensus 236 ~~l~~~l~g~~~GT~i~~~~~~~~~~ 261 (363)
T TIGR01027 236 EKIADALEGAPVGTLFHAQARRLRNR 261 (363)
T ss_pred cHHHHHhcCCCCcEEEeeCCCCccHH
Confidence 99999999998999999877665554
No 20
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.98 E-value=4.7e-31 Score=246.39 Aligned_cols=202 Identities=24% Similarity=0.353 Sum_probs=160.6
Q ss_pred eEEEEECccccccCCCCCC------------CCCeEEEEChhHHHHHHH-HcccCCCCccHHHHHHHHHHHHHHHHHHHH
Q 021163 92 RVLLKVSGEALAGDHTQNI------------DPKVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQAT 158 (316)
Q Consensus 92 ~iVIKiGGS~i~~~~~~~~------------~~~vVIVhGGG~~a~G~~-~l~~~gl~~~~~d~v~~la~~lna~Lv~~~ 158 (316)
.+|||||||++++++...+ ..+++||||||++++.+. .....|++....+.+++.+..+|+.++..+
T Consensus 32 ~~ViKiGGSvitdk~~~~i~~la~~i~~~~~~~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln~lv~~~~ 111 (262)
T cd04255 32 LNVVKIGGQSIIDRGAEAVLPLVEEIVALRPEHKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQNAEMLATL 111 (262)
T ss_pred cEEEEeccceecCCcHHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999852111 137899999999985543 222367777788888999999999888778
Q ss_pred HHhCCCCeEEEeccccccccchHHHHHHHHHHhCCCEEEEeCCCC------------CCCCCchHHHHHHHHhcCCcEEE
Q 021163 159 MESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTG------------NPFFTTDTAAALRCAEINAEVVL 226 (316)
Q Consensus 159 L~~~Gi~a~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~~g------------~~~~~sD~iAa~LA~~L~Ad~Li 226 (316)
|..+|++++.. .++ ..+.++|+.|+|||++|+++ .+++++|++|+++|.+++|++++
T Consensus 112 l~~~g~~~i~~----------~~~-~~l~~lL~~g~vPVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li 180 (262)
T cd04255 112 LAKHGGSKVGH----------GDL-LQLPTFLKAGRAPVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLI 180 (262)
T ss_pred HHHcCCCcccc----------ccH-HHHHHHHHCCCeEEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHHhCCCEEE
Confidence 88899987411 011 24678999999999999832 46788999999999999999999
Q ss_pred EecccCcccccCCCCCCCCceeccccHHHHhhC--CCCCchHHHHHHHH--hCCCcEEEEeCCCcchHHHHhcCCCcceE
Q 021163 227 KATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--DLSVMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTL 302 (316)
Q Consensus 227 ilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l--G~~v~k~~Aa~~a~--~~gI~v~I~ng~~p~~i~~~l~G~~~GT~ 302 (316)
++|||||||++||+.+|++++|++|+++|+.++ +...++..+...+. +..++++|+|+++|+++.++++|+.+||+
T Consensus 181 ~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~g~~~GT~ 260 (262)
T cd04255 181 FVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTI 260 (262)
T ss_pred EEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcCCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHcCCCCceE
Confidence 999999999999999999999999999887764 22345444443333 33368999999999999999999999999
Q ss_pred Ee
Q 021163 303 IG 304 (316)
Q Consensus 303 I~ 304 (316)
|.
T Consensus 261 i~ 262 (262)
T cd04255 261 IR 262 (262)
T ss_pred eC
Confidence 84
No 21
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.98 E-value=1.1e-31 Score=243.46 Aligned_cols=209 Identities=27% Similarity=0.427 Sum_probs=162.7
Q ss_pred EEEEECccccccCCCC-CCC----------------CCeEEEEChhHHHHHHHHcccCCCC-------ccHHHHHHHHHH
Q 021163 93 VLLKVSGEALAGDHTQ-NID----------------PKVAIVVGGGNIFRGASAAGNSGLD-------RSSADYIGMLAT 148 (316)
Q Consensus 93 iVIKiGGS~i~~~~~~-~~~----------------~~vVIVhGGG~~a~G~~~l~~~gl~-------~~~~d~v~~la~ 148 (316)
+|||||||+||+|+.. .++ .++|||||||+| ||..+++++++ +.-...++....
T Consensus 3 ~IlKlGGSvITdK~~p~t~r~~~l~ria~eI~~~~~~~livVHGgGSF--GHp~Ak~~~~~~~~~~~s~~G~~~~~~am~ 80 (252)
T COG1608 3 IILKLGGSVITDKDKPRTVREDRLRRIAREISNGKPEKLIVVHGGGSF--GHPAAKEFGLEGLKNYLSPLGFSLTHLAML 80 (252)
T ss_pred EEEEecceeeecCCCcchhhHHHHHHHHHHHhcCCcccEEEEecCccc--cCHHHHHhCccccccccCccchHHHHHHHH
Confidence 7999999999999742 222 267999999999 99998888881 122233444556
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeccccc----cccchHHHHHHHHHHhCCCEEEEeCC----C--CCCCCCchHHHHHHHH
Q 021163 149 VMNAIFLQATMESIGIPTRVQTAFRMS----EVAEPYIRRRAVRHLEKGRVVIFAAG----T--GNPFFTTDTAAALRCA 218 (316)
Q Consensus 149 ~lna~Lv~~~L~~~Gi~a~~l~~~~~~----~~~~~~i~~~l~~lL~~g~IPVv~g~----~--g~~~~~sD~iAa~LA~ 218 (316)
.+|.++++ +|.++|++++...+.+.. .+...++ ..+..+++.|++||++|+ + |..+.++|.++.+||+
T Consensus 81 ~L~~~V~~-~l~~~Gv~av~~~P~s~~~~~gr~~~~~l-~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA~ 158 (252)
T COG1608 81 ELNSIVVD-ALLDAGVRAVSVVPISFSTFNGRILYTYL-EAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLAK 158 (252)
T ss_pred HHHHHHHH-HHHhcCCccccccCcceeecCCceeechH-HHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHHHH
Confidence 78877774 888899999643333221 1111222 346789999999999995 2 4567899999999999
Q ss_pred hcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC-------CCCCchHHHHHHHHhCCCcEEEEeCCCcchHH
Q 021163 219 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 291 (316)
Q Consensus 219 ~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l-------G~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~ 291 (316)
.|++++++|+|||||||++||++.|+++.++++.......- |.+.=|++++..+.+++.+++|+|+++|++|.
T Consensus 159 ~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~ni~ 238 (252)
T COG1608 159 ELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIY 238 (252)
T ss_pred HhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhcCcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCHHHHH
Confidence 99999999999999999999999999999999866433211 12223999999999999999999999999999
Q ss_pred HHhcCCCcceEEec
Q 021163 292 KAIQGERVGTLIGG 305 (316)
Q Consensus 292 ~~l~G~~~GT~I~~ 305 (316)
++++|+.+||+|.+
T Consensus 239 ~~l~G~~vGT~I~~ 252 (252)
T COG1608 239 RALRGENVGTRIDG 252 (252)
T ss_pred HHhcCCCCceEecC
Confidence 99999999999863
No 22
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.97 E-value=1.4e-31 Score=247.64 Aligned_cols=206 Identities=22% Similarity=0.349 Sum_probs=158.5
Q ss_pred eEEEEECccccccCCC-CC---------------C-CCCeEEEEChhHHHHHHHHcccCCCCc-------cHHHHHHHHH
Q 021163 92 RVLLKVSGEALAGDHT-QN---------------I-DPKVAIVVGGGNIFRGASAAGNSGLDR-------SSADYIGMLA 147 (316)
Q Consensus 92 ~iVIKiGGS~i~~~~~-~~---------------~-~~~vVIVhGGG~~a~G~~~l~~~gl~~-------~~~d~v~~la 147 (316)
.+|||+||+++++++. .. + ..++|||||||++ ++..++++|++. .....+++..
T Consensus 1 ~iVIKiGGs~l~~~~~~~~~~~~~l~~l~~~l~~l~g~~vvlVhGgg~~--~~~~~~~~g~~~g~~~~~~~~l~~~~~~~ 78 (252)
T cd04241 1 MIILKLGGSVITDKDRPETIREENLERIARELAEAIDEKLVLVHGGGSF--GHPKAKEYGLPDGDGSFSAEGVAETHEAM 78 (252)
T ss_pred CEEEEEeceEEEcCCCCCccCHHHHHHHHHHHHhccCCCEEEEECCCcc--cCHHHHHhCCCcCCCchhhhhHHHHHHHH
Confidence 3799999999998742 11 2 3478999999999 554455556542 1233444445
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEecccccccc--c-hHHH-HHHHHHHhCCCEEEEeCC---CC---CCCCCchHHHHHHH
Q 021163 148 TVMNAIFLQATMESIGIPTRVQTAFRMSEVA--E-PYIR-RRAVRHLEKGRVVIFAAG---TG---NPFFTTDTAAALRC 217 (316)
Q Consensus 148 ~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~~--~-~~i~-~~l~~lL~~g~IPVv~g~---~g---~~~~~sD~iAa~LA 217 (316)
.++|..++ ++|.++|+++.++++.+..... + ..++ +.+.++|+.|+|||++++ ++ ..++++|++|+++|
T Consensus 79 ~~ln~~~~-~~l~~~g~~a~~l~~~~~~~~~~g~~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~lA 157 (252)
T cd04241 79 LELNSIVV-DALLEAGVPAVSVPPSSFFVTENGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVELA 157 (252)
T ss_pred HHHHHHHH-HHHHHCCCCeEEEChHHeEEecCCeeeeecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHHHH
Confidence 67887666 5889999999987765532111 1 1122 446789999999999974 11 24678999999999
Q ss_pred HhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC------------CCCCchHHHHHHHHhCCCcEEEEeCC
Q 021163 218 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------------DLSVMDMTAITLCQENNIPVVVFNLN 285 (316)
Q Consensus 218 ~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l------------G~~v~k~~Aa~~a~~~gI~v~I~ng~ 285 (316)
.+|+|++|+++|||||||++|| |++++|++++++|++++ |.|..|++++..|.++|++++|+|++
T Consensus 158 ~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v~I~~g~ 234 (252)
T cd04241 158 KALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFNGD 234 (252)
T ss_pred HHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 9999999999999999999999 78999999998654432 34566999999999999999999999
Q ss_pred CcchHHHHhcCCCcceEE
Q 021163 286 QPGNIAKAIQGERVGTLI 303 (316)
Q Consensus 286 ~p~~i~~~l~G~~~GT~I 303 (316)
+|+.+.++++|+.+||+|
T Consensus 235 ~~~~l~~~l~g~~~GT~i 252 (252)
T cd04241 235 KPENLYRALLGNFIGTRI 252 (252)
T ss_pred CHHHHHHHHcCCCCceEC
Confidence 999999999999899986
No 23
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=99.97 E-value=3.3e-31 Score=243.61 Aligned_cols=203 Identities=26% Similarity=0.329 Sum_probs=157.4
Q ss_pred eEEEEECccccccCCCC-C----------CCCCeEEEEC-hhHHHHHHHH-ccc--CCCCccHHHHHHHHHHHHHHHHHH
Q 021163 92 RVLLKVSGEALAGDHTQ-N----------IDPKVAIVVG-GGNIFRGASA-AGN--SGLDRSSADYIGMLATVMNAIFLQ 156 (316)
Q Consensus 92 ~iVIKiGGS~i~~~~~~-~----------~~~~vVIVhG-GG~~a~G~~~-l~~--~gl~~~~~d~v~~la~~lna~Lv~ 156 (316)
.+|||+||+++.+.+.. . ...++||||| +|..++.+.. .+. ...+....+.+.+.++.+|+.++.
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~~~~~~~~~i~~~Ge~~~~~~~~ 80 (239)
T cd04246 1 IIVQKFGGTSVADIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQISAALLA 80 (239)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHHH
Confidence 37999999999875321 1 1246788888 5777655532 221 112344556676678899999888
Q ss_pred HHHHhCCCCeEEEecccccccc-----c---hHHH-HHHHHHHhCCCEEEEeCCCC---C------CCCCchHHHHHHHH
Q 021163 157 ATMESIGIPTRVQTAFRMSEVA-----E---PYIR-RRAVRHLEKGRVVIFAAGTG---N------PFFTTDTAAALRCA 218 (316)
Q Consensus 157 ~~L~~~Gi~a~~l~~~~~~~~~-----~---~~i~-~~l~~lL~~g~IPVv~g~~g---~------~~~~sD~iAa~LA~ 218 (316)
++|+++|+++.++++.+...+. + ..++ ..+..++++|.|||++|+.+ + .++++|++|+.+|.
T Consensus 81 ~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~~A~~lA~ 160 (239)
T cd04246 81 MALNRLGIKAISLTGWQAGILTDDHHGNARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAA 160 (239)
T ss_pred HHHHhCCCCeEEeccccCCEEecCCCCceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCCCChHHHHHHHHH
Confidence 8999999999887765532111 1 1122 44678899999999998622 1 34589999999999
Q ss_pred hcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhc
Q 021163 219 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 295 (316)
Q Consensus 219 ~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~ 295 (316)
+|+|++|++||||||||++||+.+|++++|++++++|+.++ |.+++|++|+++|+++|||++|+|+++|+
T Consensus 161 ~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~~------- 233 (239)
T cd04246 161 ALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN------- 233 (239)
T ss_pred HcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCCC-------
Confidence 99999999999999999999999999999999999998874 78899999999999999999999998874
Q ss_pred CCCcceEEe
Q 021163 296 GERVGTLIG 304 (316)
Q Consensus 296 G~~~GT~I~ 304 (316)
.||+|.
T Consensus 234 ---~gt~i~ 239 (239)
T cd04246 234 ---PGTLIT 239 (239)
T ss_pred ---CCcEeC
Confidence 599884
No 24
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=99.97 E-value=5.2e-31 Score=242.46 Aligned_cols=203 Identities=25% Similarity=0.309 Sum_probs=157.9
Q ss_pred eEEEEECccccccCCCC-C----------CCCCeEEEECh-hHHHHHHHHcc-cCC--CCccHHHHHHHHHHHHHHHHHH
Q 021163 92 RVLLKVSGEALAGDHTQ-N----------IDPKVAIVVGG-GNIFRGASAAG-NSG--LDRSSADYIGMLATVMNAIFLQ 156 (316)
Q Consensus 92 ~iVIKiGGS~i~~~~~~-~----------~~~~vVIVhGG-G~~a~G~~~l~-~~g--l~~~~~d~v~~la~~lna~Lv~ 156 (316)
.+|||+||+++.+.+.. . ...++|||||| |...+.+.... +.. .+....+.+.+.++++|+.+++
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~~~~~~~~~~~i~a~Ge~~~~~l~~ 80 (239)
T cd04261 1 LIVQKFGGTSVASIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQVSIALLA 80 (239)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999775321 1 12468888887 77765553221 111 2333456666677899999988
Q ss_pred HHHHhCCCCeEEEecccccc-----ccc---hHHH-HHHHHHHhCCCEEEEeCCCC---C------CCCCchHHHHHHHH
Q 021163 157 ATMESIGIPTRVQTAFRMSE-----VAE---PYIR-RRAVRHLEKGRVVIFAAGTG---N------PFFTTDTAAALRCA 218 (316)
Q Consensus 157 ~~L~~~Gi~a~~l~~~~~~~-----~~~---~~i~-~~l~~lL~~g~IPVv~g~~g---~------~~~~sD~iAa~LA~ 218 (316)
++|+++|+++.++++.+... +.. .+++ ..+.+++++|.|||++|+.+ + .++++|++|+.+|.
T Consensus 81 ~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~ 160 (239)
T cd04261 81 MALNRLGIKAISLTGWQAGILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAA 160 (239)
T ss_pred HHHHhCCCCeEEechhhCCEEecCCCCcceechhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCCCChHHHHHHHHH
Confidence 89999999999877765422 111 1222 44678899999999998722 1 35589999999999
Q ss_pred hcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhc
Q 021163 219 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 295 (316)
Q Consensus 219 ~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~ 295 (316)
+|+|+++++||||||||++||+.+|++++|++|+++|+.++ |.+++|++|+++|.++|||++|.|+++|+
T Consensus 161 ~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~~------- 233 (239)
T cd04261 161 ALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE------- 233 (239)
T ss_pred HcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCCC-------
Confidence 99999999999999999999999999999999999998874 88999999999999999999999999874
Q ss_pred CCCcceEEe
Q 021163 296 GERVGTLIG 304 (316)
Q Consensus 296 G~~~GT~I~ 304 (316)
.||+|.
T Consensus 234 ---~gt~i~ 239 (239)
T cd04261 234 ---PGTLIT 239 (239)
T ss_pred ---CCcEeC
Confidence 599884
No 25
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=99.97 E-value=3.5e-31 Score=263.15 Aligned_cols=164 Identities=28% Similarity=0.362 Sum_probs=142.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeccccccccc-----hH---H-HHH-HHHHHhCCCEEEEeCCCC--
Q 021163 136 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE-----PY---I-RRR-AVRHLEKGRVVIFAAGTG-- 203 (316)
Q Consensus 136 ~~~~~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~~~-----~~---i-~~~-l~~lL~~g~IPVv~g~~g-- 203 (316)
+++..|++..+||++++.|++.+|++.|+++.++++++.....+ .. . .++ +..+++.+.|||++||.|
T Consensus 107 ~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~ 186 (447)
T COG0527 107 SPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLEEGKVPVVAGFQGIN 186 (447)
T ss_pred CHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcccccccchhhhhhhHHHHhcCCcEEEecCceeec
Confidence 44567888899999999999999999999999999886643322 11 1 123 566888999999999844
Q ss_pred -------CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHH
Q 021163 204 -------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQ 273 (316)
Q Consensus 204 -------~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~ 273 (316)
.++++||++|++||++|+|+++.|||||||||++|||.+|+|++|++|+|+|+.|+ |++++||+|+++|+
T Consensus 187 ~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~GAkVLHprav~pa~ 266 (447)
T COG0527 187 EDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELAYLGAKVLHPRAVEPAM 266 (447)
T ss_pred CCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHHHCCchhcCHHHHHHHH
Confidence 25789999999999999999999999999999999999999999999999999885 99999999999999
Q ss_pred hCCCcEEEEeCCCcchHHHHhcCCCcceEEecCCC
Q 021163 274 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 308 (316)
Q Consensus 274 ~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~~~~ 308 (316)
+++||++|.|.++|+ ..||+|.++..
T Consensus 267 ~~~Ip~~i~~t~~p~---------~~GTlI~~~~~ 292 (447)
T COG0527 267 RSGIPLRIKNTFNPD---------APGTLITAETE 292 (447)
T ss_pred hcCCcEEEEecCCCC---------CCceEEecCCc
Confidence 999999999999986 47999998753
No 26
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=99.97 E-value=4.5e-30 Score=234.74 Aligned_cols=194 Identities=25% Similarity=0.302 Sum_probs=153.9
Q ss_pred eEEEEECccccccCCCC-C---------CCCCeEEEEChhHHHHH-HHHcccCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 021163 92 RVLLKVSGEALAGDHTQ-N---------IDPKVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATME 160 (316)
Q Consensus 92 ~iVIKiGGS~i~~~~~~-~---------~~~~vVIVhGGG~~a~G-~~~l~~~gl~~~~~d~v~~la~~lna~Lv~~~L~ 160 (316)
.+|+|+||+++.+++.. . -..++||||||+..+.. ...+. .+.++++.+|+.+++++|+
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~g~~vvvV~Sg~~~~t~~l~~~~----------~~~s~Ge~~~~~l~~~~l~ 70 (227)
T cd04234 1 MVVQKFGGTSVASAERIKRVADIIKAYEKGNRVVVVVSAMGGVTDLLIELA----------LLLSFGERLSARLLAAALR 70 (227)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhhcCCCEEEEEcCCCcccHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 37999999999876421 0 13578999977554322 22111 4555889999999999999
Q ss_pred hCCCCeEEEeccccccccc-------h--HHHHHHHHHHhC-CCEEEEeCCC---CC------CCCCchHHHHHHHHhcC
Q 021163 161 SIGIPTRVQTAFRMSEVAE-------P--YIRRRAVRHLEK-GRVVIFAAGT---GN------PFFTTDTAAALRCAEIN 221 (316)
Q Consensus 161 ~~Gi~a~~l~~~~~~~~~~-------~--~i~~~l~~lL~~-g~IPVv~g~~---g~------~~~~sD~iAa~LA~~L~ 221 (316)
++|+++.++++.+...... . ...+.+.++++. |.|||++|+. ++ .++++|++|+++|.+|+
T Consensus 71 ~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~ 150 (227)
T cd04234 71 DRGIKARSLDARQAGITTDDNHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALG 150 (227)
T ss_pred HCCCCeEEeCHHHCCEEcCCccchhhHHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhC
Confidence 9999999887765432211 1 112446678999 9999999862 21 34689999999999999
Q ss_pred CcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcCCC
Q 021163 222 AEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGER 298 (316)
Q Consensus 222 Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~ 298 (316)
|+++++||||||||++||+.+|++++|++++++|++++ |.+++|++|+++|.++|++++|+|+++|+ .
T Consensus 151 A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~---------~ 221 (227)
T cd04234 151 ADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPE---------A 221 (227)
T ss_pred CCEEEEEECCCccCCCCCCCCCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCC---------C
Confidence 99999999999999999999999999999999998875 88899999999999999999999999886 3
Q ss_pred cceEEe
Q 021163 299 VGTLIG 304 (316)
Q Consensus 299 ~GT~I~ 304 (316)
.||+|.
T Consensus 222 ~gT~I~ 227 (227)
T cd04234 222 PGTLIT 227 (227)
T ss_pred CCCEeC
Confidence 599883
No 27
>PRK08841 aspartate kinase; Validated
Probab=99.97 E-value=5.6e-30 Score=251.43 Aligned_cols=205 Identities=23% Similarity=0.292 Sum_probs=161.1
Q ss_pred CeEEEEECccccccCCCC-----------CCCCCeEEEEChhH-HHHHHHHc-cc-CCC-CccHHHHHHHHHHHHHHHHH
Q 021163 91 QRVLLKVSGEALAGDHTQ-----------NIDPKVAIVVGGGN-IFRGASAA-GN-SGL-DRSSADYIGMLATVMNAIFL 155 (316)
Q Consensus 91 k~iVIKiGGS~i~~~~~~-----------~~~~~vVIVhGGG~-~a~G~~~l-~~-~gl-~~~~~d~v~~la~~lna~Lv 155 (316)
+++|+|+||+.+.+.+.. ....++||||||+. ..+....+ +. ... ++...|.+.+.++.+++.++
T Consensus 2 ~~~V~KfGGtsv~~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~~~~~~~~~~d~l~s~GE~~s~~ll 81 (392)
T PRK08841 2 PLIVQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVDSVPTARELDVLLSAGEQVSMALL 81 (392)
T ss_pred CeEEEeECcccCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 478999999999775421 01347899998876 43333221 11 111 23356777889999999999
Q ss_pred HHHHHhCCCCeEEEecccccccc-----ch---HHH-HHHHHHHhCCCEEEEeCCCC---------CCCCCchHHHHHHH
Q 021163 156 QATMESIGIPTRVQTAFRMSEVA-----EP---YIR-RRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRC 217 (316)
Q Consensus 156 ~~~L~~~Gi~a~~l~~~~~~~~~-----~~---~i~-~~l~~lL~~g~IPVv~g~~g---------~~~~~sD~iAa~LA 217 (316)
+.+|++.|+++.++++.+...+. +. .++ ..+..+++.|.|||++|+.+ ..++++|++|+.+|
T Consensus 82 a~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~i~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g~~ttlgrggsD~tAa~lA 161 (392)
T PRK08841 82 AMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALA 161 (392)
T ss_pred HHHHHhCCCCeEEEehhHcCEEecCCCCCceechhhHHHHHHHHhCCCEEEEeCCcccCCCCCEEEeCCCChHHHHHHHH
Confidence 99999999999998877643221 11 122 34567889999999999733 24678999999999
Q ss_pred HhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHh
Q 021163 218 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 294 (316)
Q Consensus 218 ~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l 294 (316)
.+|+|+++++||||||||++||+.+|+|++|++|+|+|+.++ |++++|++|+++|+++|||++|.|++++.
T Consensus 162 ~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~~~------ 235 (392)
T PRK08841 162 GALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEVG------ 235 (392)
T ss_pred HHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCCCC------
Confidence 999999999999999999999999999999999999988775 88999999999999999999999998752
Q ss_pred cCCCcceEEec
Q 021163 295 QGERVGTLIGG 305 (316)
Q Consensus 295 ~G~~~GT~I~~ 305 (316)
.||+|..
T Consensus 236 ----~GT~I~~ 242 (392)
T PRK08841 236 ----EGTLIKG 242 (392)
T ss_pred ----CCeEEEe
Confidence 4999964
No 28
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=99.97 E-value=4.7e-30 Score=252.04 Aligned_cols=205 Identities=20% Similarity=0.262 Sum_probs=162.4
Q ss_pred eEEEEECccccccCCCC-C----------CCCCeEEEEChhHHHHH-HHHcccCC----CCccHHHHHHHHHHHHHHHHH
Q 021163 92 RVLLKVSGEALAGDHTQ-N----------IDPKVAIVVGGGNIFRG-ASAAGNSG----LDRSSADYIGMLATVMNAIFL 155 (316)
Q Consensus 92 ~iVIKiGGS~i~~~~~~-~----------~~~~vVIVhGGG~~a~G-~~~l~~~g----l~~~~~d~v~~la~~lna~Lv 155 (316)
++|+|+||+.+.+.+.. . ...++|||||||..+.. +..+.+.+ .+....|.+.++++++++.++
T Consensus 2 ~iViK~GGs~~~~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~~~~~~~~~~~~i~~~Ge~~s~~~~ 81 (401)
T TIGR00656 2 LIVQKFGGTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIRDAITPRERDELVSHGERLSSALF 81 (401)
T ss_pred cEEEEECCcCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHhccCCChHHHHHHhhHHHHHHHHHH
Confidence 58999999999876421 1 13478999999755443 33332222 233446778889999999999
Q ss_pred HHHHHhCCCCeEEEeccccccc-----cc-----hHHHHHHHHHHhCCCEEEEeCCC-----C----CCCCCchHHHHHH
Q 021163 156 QATMESIGIPTRVQTAFRMSEV-----AE-----PYIRRRAVRHLEKGRVVIFAAGT-----G----NPFFTTDTAAALR 216 (316)
Q Consensus 156 ~~~L~~~Gi~a~~l~~~~~~~~-----~~-----~~i~~~l~~lL~~g~IPVv~g~~-----g----~~~~~sD~iAa~L 216 (316)
.++|+++|+++.++++.+...+ .+ ....+.+.++++.|.|||++|+. | ..++++|++|+++
T Consensus 82 ~~~l~~~g~~a~~l~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g~~~~lgrg~sD~~A~~l 161 (401)
T TIGR00656 82 SGALRDLGVKAIWLDGGEAGIITDDNFGNAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALL 161 (401)
T ss_pred HHHHHhCCCceEEeccccceEEeCCCCCceEeeecchHHHHHHHHhCCCEEEecCcceeCCCCCEeecCCCcHHHHHHHH
Confidence 9999999999998876543211 11 11224567889999999999863 2 1356899999999
Q ss_pred HHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHH
Q 021163 217 CAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKA 293 (316)
Q Consensus 217 A~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~ 293 (316)
|.+|+|+++++||||||||++||+.+|+++++++++|+|+.++ |++++|++|+++|++++||++|.|+++|+
T Consensus 162 A~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~~~----- 236 (401)
T TIGR00656 162 AAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE----- 236 (401)
T ss_pred HHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCCCC-----
Confidence 9999999999999999999999999999999999999999885 88999999999999999999999999885
Q ss_pred hcCCCcceEEecC
Q 021163 294 IQGERVGTLIGGT 306 (316)
Q Consensus 294 l~G~~~GT~I~~~ 306 (316)
.||+|...
T Consensus 237 -----~gT~I~~~ 244 (401)
T TIGR00656 237 -----EGTLITNS 244 (401)
T ss_pred -----CCeEEEeC
Confidence 49999764
No 29
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=99.97 E-value=1.1e-29 Score=241.19 Aligned_cols=158 Identities=28% Similarity=0.375 Sum_probs=134.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecccccc-----ccc--------hHHHHHHHHHHhCCCEEEEeCCCC-
Q 021163 138 SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE-----VAE--------PYIRRRAVRHLEKGRVVIFAAGTG- 203 (316)
Q Consensus 138 ~~~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~-----~~~--------~~i~~~l~~lL~~g~IPVv~g~~g- 203 (316)
...|.+.++|+++++.+++.+|+++|+++.++++.+... +.+ .+++..+..+++.+.|||++||.+
T Consensus 116 ~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~i~~~l~~ll~~~~vpVv~Gfig~ 195 (298)
T cd04244 116 RSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLLPMLEDGKIPVVTGFIGA 195 (298)
T ss_pred hHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHHHHHHHHHHHHhhcCCEEEEeCcccc
Confidence 345667778999999999999999999999988766431 111 123344556788899999999622
Q ss_pred --------CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHH
Q 021163 204 --------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLC 272 (316)
Q Consensus 204 --------~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a 272 (316)
..++++|++|+.+|.+|+|+++++||||||||++||+.+|++++|++++|+|+.++ |++++|++|+++|
T Consensus 196 ~~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai~~a 275 (298)
T cd04244 196 TEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPA 275 (298)
T ss_pred CCCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHHHHH
Confidence 24679999999999999999999999999999999999999999999999999885 8999999999999
Q ss_pred HhCCCcEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163 273 QENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 304 (316)
Q Consensus 273 ~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~ 304 (316)
++++||++|.|+++|+ ..||+|.
T Consensus 276 ~~~~Ipi~i~n~~~p~---------~~GT~I~ 298 (298)
T cd04244 276 MEKGIPVRVKNTFNPE---------APGTLIT 298 (298)
T ss_pred HHcCCcEEEeeCCCCC---------CCCCEeC
Confidence 9999999999999986 4799984
No 30
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.96 E-value=1.9e-29 Score=236.07 Aligned_cols=205 Identities=20% Similarity=0.290 Sum_probs=159.2
Q ss_pred eEEEEECccccccCCCC--------CCCCCeEEEEChhHHHHHHHHcccCCCCc----------------cHHHHHHH-H
Q 021163 92 RVLLKVSGEALAGDHTQ--------NIDPKVAIVVGGGNIFRGASAAGNSGLDR----------------SSADYIGM-L 146 (316)
Q Consensus 92 ~iVIKiGGS~i~~~~~~--------~~~~~vVIVhGGG~~a~G~~~l~~~gl~~----------------~~~d~v~~-l 146 (316)
.+|||+||+++.++... ....++|||||||++++. ++++++++. ..++.+.+ +
T Consensus 1 ~~ViK~GG~~l~~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~--~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~~~a~ 78 (268)
T PRK14058 1 MIVVKIGGSVGIDPEDALIDVASLWADGERVVLVHGGSDEVNE--LLERLGIEPRFVTSPSGVTSRYTDRETLEVFIMAM 78 (268)
T ss_pred CEEEEEChHHhhCcHHHHHHHHHHHHCCCCEEEEeCCHHHHHH--HHHHcCCCceEEeCCCCCceEeCCHHHHHHHHHHH
Confidence 47999999999876421 123578999999999544 443334322 12344444 5
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEecccccccc-------------------chH------HH-HHHHHHHhCCCEEEEeC
Q 021163 147 ATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-------------------EPY------IR-RRAVRHLEKGRVVIFAA 200 (316)
Q Consensus 147 a~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~~-------------------~~~------i~-~~l~~lL~~g~IPVv~g 200 (316)
+ .+|..+++ +|+++|++++++++.+...+. ..| ++ +.+..++++|.|||++|
T Consensus 79 ~-~ln~~lv~-~L~~~Gv~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~g~iPVi~~ 156 (268)
T PRK14058 79 A-LINKQLVE-RLQSLGVNAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVAP 156 (268)
T ss_pred H-HHHHHHHH-HHHhCCCCccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHCCCEEEEeC
Confidence 5 89999886 999999999988776532110 001 22 44678999999999998
Q ss_pred C----CC-CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC-----CCCCchHHHHH
Q 021163 201 G----TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVMDMTAIT 270 (316)
Q Consensus 201 ~----~g-~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l-----G~~v~k~~Aa~ 270 (316)
. .| ..++++|++|+++|.+|+|++|+|||||||||++||+ ++++|++++++|+.++ |.|..|++++.
T Consensus 157 ~~~~~~g~~~~i~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~tGgM~~Kl~aa~ 233 (268)
T PRK14058 157 PALSEEGEPLNVDGDRAAAAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITPEEAEELSKAAGGGMKKKVLMAA 233 (268)
T ss_pred ceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCHHHHHHHhhccCCccHHHHHHHH
Confidence 5 12 2357899999999999999999999999999999883 4789999999888764 67788999999
Q ss_pred HHHhCCC-cEEEEeCCCcchHHHHhcCCCcceEEec
Q 021163 271 LCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGG 305 (316)
Q Consensus 271 ~a~~~gI-~v~I~ng~~p~~i~~~l~G~~~GT~I~~ 305 (316)
.|.++|+ +++|+|+++|+++.++++|+ ||+|.+
T Consensus 234 ~a~~~Gv~~v~I~~g~~~~~l~~~l~G~--GT~I~~ 267 (268)
T PRK14058 234 EAVEGGVGRVIIADANVDDPISAALAGE--GTVIVN 267 (268)
T ss_pred HHHHcCCCEEEEEcCCCcchHHHHhCCC--ceEEec
Confidence 9999999 79999999999999999885 999975
No 31
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=99.96 E-value=7.5e-29 Score=229.06 Aligned_cols=202 Identities=26% Similarity=0.352 Sum_probs=152.2
Q ss_pred EEEEECccccccCCCC-CC----------CCCeEEEE-----ChhHHHHHH-HHc-cc--CCCCccHHHHHHHHHHHHHH
Q 021163 93 VLLKVSGEALAGDHTQ-NI----------DPKVAIVV-----GGGNIFRGA-SAA-GN--SGLDRSSADYIGMLATVMNA 152 (316)
Q Consensus 93 iVIKiGGS~i~~~~~~-~~----------~~~vVIVh-----GGG~~a~G~-~~l-~~--~gl~~~~~d~v~~la~~lna 152 (316)
+|||+||+++++++.. .+ ..++|||| |||..+... ..+ .. ..++....+.+.+.++..+.
T Consensus 2 ~ViK~GGs~l~~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~Ge~~~~ 81 (244)
T cd04260 2 IVQKFGGTSVSTKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAENSDISPRELDLLMSCGEIISA 81 (244)
T ss_pred EEEEECchhcCCHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHH
Confidence 7999999999887521 11 12445555 455444321 111 11 12333445667677888888
Q ss_pred HHHHHHHHhCCCCeEEEecccccc-----ccc---hHHH-HHHHHHHhCCCEEEEeCC---CCC------CCCCchHHHH
Q 021163 153 IFLQATMESIGIPTRVQTAFRMSE-----VAE---PYIR-RRAVRHLEKGRVVIFAAG---TGN------PFFTTDTAAA 214 (316)
Q Consensus 153 ~Lv~~~L~~~Gi~a~~l~~~~~~~-----~~~---~~i~-~~l~~lL~~g~IPVv~g~---~g~------~~~~sD~iAa 214 (316)
.++.++|+++|+++..+++.+... +.. .+++ +.+..+++.|.|||++|+ +++ .++++|++|+
T Consensus 82 ~~~~~~l~~~Gi~a~~l~~~~~~lit~~~~~~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~~~~g~~~~l~rg~sD~~A~ 161 (244)
T cd04260 82 VVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTAA 161 (244)
T ss_pred HHHHHHHHhCCCCeEEechHHcCEEecCCCCceeeeccCHHHHHHHHhCCCEEEecCCcccCCCCCEEEeCCCchHHHHH
Confidence 788889999999999887654322 211 1222 346678999999999986 222 2458999999
Q ss_pred HHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEeCCCcchHH
Q 021163 215 LRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 291 (316)
Q Consensus 215 ~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~ 291 (316)
.||.+|+|+++++||||||||++||+.+|++++|++|+++|+.++ |..++|++|+++|.+++++++|.|+++|.
T Consensus 162 ~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~~~~~i~v~I~~~~~~~--- 238 (244)
T cd04260 162 ALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSEN--- 238 (244)
T ss_pred HHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCC---
Confidence 999999999999999999999999999999999999999998874 78899999999999999999999998763
Q ss_pred HHhcCCCcceEEe
Q 021163 292 KAIQGERVGTLIG 304 (316)
Q Consensus 292 ~~l~G~~~GT~I~ 304 (316)
.||+|.
T Consensus 239 -------~gt~i~ 244 (244)
T cd04260 239 -------PGTLIT 244 (244)
T ss_pred -------CCCEeC
Confidence 489884
No 32
>PRK08210 aspartate kinase I; Reviewed
Probab=99.96 E-value=5.1e-29 Score=245.20 Aligned_cols=206 Identities=26% Similarity=0.343 Sum_probs=156.3
Q ss_pred CeEEEEECccccccCCCC-C----C------CCCeEEEE-ChhHH----HHHH-HHc-c--cCCCCccHHHHHHHHHHHH
Q 021163 91 QRVLLKVSGEALAGDHTQ-N----I------DPKVAIVV-GGGNI----FRGA-SAA-G--NSGLDRSSADYIGMLATVM 150 (316)
Q Consensus 91 k~iVIKiGGS~i~~~~~~-~----~------~~~vVIVh-GGG~~----a~G~-~~l-~--~~gl~~~~~d~v~~la~~l 150 (316)
+++|||+||+++++++.. . + ..++|||| |+|++ +... ..+ . ....+....+.+.++++..
T Consensus 2 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~~~~~~~~~~~l~~~Ge~~ 81 (403)
T PRK08210 2 KIIVQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEFSEISKREQDLLMSCGEII 81 (403)
T ss_pred CeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhccCCChHHHHHHHhHhHHH
Confidence 689999999999987531 1 1 12455555 43443 2111 111 1 0123444567777789999
Q ss_pred HHHHHHHHHHhCCCCeEEEeccccccc-----cc---hHHH-HHHHHHHhCCCEEEEeCCCC---C------CCCCchHH
Q 021163 151 NAIFLQATMESIGIPTRVQTAFRMSEV-----AE---PYIR-RRAVRHLEKGRVVIFAAGTG---N------PFFTTDTA 212 (316)
Q Consensus 151 na~Lv~~~L~~~Gi~a~~l~~~~~~~~-----~~---~~i~-~~l~~lL~~g~IPVv~g~~g---~------~~~~sD~i 212 (316)
++.++.++|+++|+++.++++.+...+ .. ..++ +.+..+++.|.|||++|+.+ . .++++|++
T Consensus 82 s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~~~~g~~~~l~rg~sD~~ 161 (403)
T PRK08210 82 SSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVAGFQGVTENGDITTLGRGGSDTT 161 (403)
T ss_pred HHHHHHHHHHhCCCCeEEechHHccEEccCCCCceeeehhhHHHHHHHHhcCCEEEeeCeeecCCCCCEEEeCCCchHHH
Confidence 988888999999999998876543211 11 1222 44567889999999999622 1 24589999
Q ss_pred HHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEeCCCcch
Q 021163 213 AALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGN 289 (316)
Q Consensus 213 Aa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~ 289 (316)
|+.||.+|+|+++++||||||||++||+.+|++++|++|+++|+.++ |++++|++|+++|.++++|++|.|++++.
T Consensus 162 A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~- 240 (403)
T PRK08210 162 AAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYSDS- 240 (403)
T ss_pred HHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHHHCCCeEEEEecCCCc-
Confidence 99999999999999999999999999999999999999999998874 88999999999999999999999998642
Q ss_pred HHHHhcCCCcceEEecC
Q 021163 290 IAKAIQGERVGTLIGGT 306 (316)
Q Consensus 290 i~~~l~G~~~GT~I~~~ 306 (316)
.||+|.+.
T Consensus 241 ---------~gT~I~~~ 248 (403)
T PRK08210 241 ---------PGTLITSL 248 (403)
T ss_pred ---------CCcEEEec
Confidence 49999764
No 33
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=99.96 E-value=1.1e-28 Score=233.27 Aligned_cols=158 Identities=23% Similarity=0.293 Sum_probs=136.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeccccccc-cchH--------HHHHHHHHHhCCCEEEEeCCCCC----
Q 021163 138 SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-AEPY--------IRRRAVRHLEKGRVVIFAAGTGN---- 204 (316)
Q Consensus 138 ~~~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~-~~~~--------i~~~l~~lL~~g~IPVv~g~~g~---- 204 (316)
...|.+.++|+++|+.+++.+|++.|+++..+++++.+.+ .+.+ ..+++.+.++.+.|||++||.|.
T Consensus 110 ~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G 189 (288)
T cd04245 110 YLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKKLRDSDEKLVIPGFYGYSKNG 189 (288)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchhhHHHHHHHHhCCCEEEEeCccccCCCC
Confidence 3457778899999999999999999999998887665322 1111 12446677788899999998542
Q ss_pred -----CCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHhCC
Q 021163 205 -----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENN 276 (316)
Q Consensus 205 -----~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~~g 276 (316)
+++++|++|+.+|++|+|+++.+||||||||++||+.+|+|+.+++|+|+|+.++ |+.++|+.|+.+|++++
T Consensus 190 ~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~~~ 269 (288)
T cd04245 190 DIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAG 269 (288)
T ss_pred CEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHHCC
Confidence 5789999999999999999999999999999999999999999999999999985 99999999999999999
Q ss_pred CcEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163 277 IPVVVFNLNQPGNIAKAIQGERVGTLIG 304 (316)
Q Consensus 277 I~v~I~ng~~p~~i~~~l~G~~~GT~I~ 304 (316)
||++|.|.++|+ ..||+|.
T Consensus 270 Ipi~v~n~~~p~---------~~GT~I~ 288 (288)
T cd04245 270 IPINIKNTNHPE---------APGTLIV 288 (288)
T ss_pred CcEEEeeCCCCC---------CCCceeC
Confidence 999999999986 4799984
No 34
>PRK06635 aspartate kinase; Reviewed
Probab=99.96 E-value=6.2e-29 Score=244.36 Aligned_cols=206 Identities=26% Similarity=0.347 Sum_probs=159.4
Q ss_pred CeEEEEECccccccCCCC-C----------CCCCeEEEECh-hHHHHHHH-Hccc-CCC-CccHHHHHHHHHHHHHHHHH
Q 021163 91 QRVLLKVSGEALAGDHTQ-N----------IDPKVAIVVGG-GNIFRGAS-AAGN-SGL-DRSSADYIGMLATVMNAIFL 155 (316)
Q Consensus 91 k~iVIKiGGS~i~~~~~~-~----------~~~~vVIVhGG-G~~a~G~~-~l~~-~gl-~~~~~d~v~~la~~lna~Lv 155 (316)
+++|||+||+++.+.+.. . -..++|||||| |...+.+. .++. .+. +....+.+.+.++.+|+.++
T Consensus 2 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ge~~~~~~~ 81 (404)
T PRK06635 2 ALIVQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPLPDPRELDMLLSTGEQVSVALL 81 (404)
T ss_pred CeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhccCCCHHHHHHHhhhhHHHHHHHH
Confidence 579999999999875321 1 12467777775 66655442 2221 111 34445667778889999999
Q ss_pred HHHHHhCCCCeEEEecccccccc-ch-------HH-HHHHHHHHhCCCEEEEeCCCC---------CCCCCchHHHHHHH
Q 021163 156 QATMESIGIPTRVQTAFRMSEVA-EP-------YI-RRRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRC 217 (316)
Q Consensus 156 ~~~L~~~Gi~a~~l~~~~~~~~~-~~-------~i-~~~l~~lL~~g~IPVv~g~~g---------~~~~~sD~iAa~LA 217 (316)
+++|+++|+++.++++.+...+. +. .+ .+.+..+++.|.|||++|+.+ ..++++|++|+++|
T Consensus 82 ~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g~~~~l~rg~sD~~A~~lA 161 (404)
T PRK06635 82 AMALQSLGVKARSFTGWQAGIITDSAHGKARITDIDPSRIREALDEGDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALA 161 (404)
T ss_pred HHHHHhCCCCeEEeChhhCCEEecCCCCceEeeecCHHHHHHHHhCCCEEEecCccEeCCCCCEEecCCCChHHHHHHHH
Confidence 99999999999988776542221 11 11 244678899999999998622 14568999999999
Q ss_pred HhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHh
Q 021163 218 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 294 (316)
Q Consensus 218 ~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l 294 (316)
.+|+|+++++||||||||++||+.+|++++|++++|+|+.++ |.+++|++|++++.+++++++|.|++++
T Consensus 162 ~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~~------- 234 (404)
T PRK06635 162 AALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFSD------- 234 (404)
T ss_pred HHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCCC-------
Confidence 999999999999999999999999999999999999998875 8889999999999999999999999865
Q ss_pred cCCCcceEEecC
Q 021163 295 QGERVGTLIGGT 306 (316)
Q Consensus 295 ~G~~~GT~I~~~ 306 (316)
..||+|...
T Consensus 235 ---~~gT~i~~~ 243 (404)
T PRK06635 235 ---NPGTLITGE 243 (404)
T ss_pred ---CCCCEEeeC
Confidence 258999764
No 35
>PLN02512 acetylglutamate kinase
Probab=99.96 E-value=1.8e-28 Score=233.93 Aligned_cols=212 Identities=18% Similarity=0.275 Sum_probs=160.7
Q ss_pred CCCCeEEEEECccccccCCCC-C----------CCCCeEEEEChhHHHHHHHHcccCCCCc--------c---HHHHHHH
Q 021163 88 YKWQRVLLKVSGEALAGDHTQ-N----------IDPKVAIVVGGGNIFRGASAAGNSGLDR--------S---SADYIGM 145 (316)
Q Consensus 88 ~~~k~iVIKiGGS~i~~~~~~-~----------~~~~vVIVhGGG~~a~G~~~l~~~gl~~--------~---~~d~v~~ 145 (316)
.+.+++|||+||+++++++.. . ...++|||||||++++.+ ++++++.+ . ..+.+.+
T Consensus 45 ~~~~tiVIKlGGs~i~d~~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~--~~~~gi~~~~~~G~rvT~~~~lei~~~ 122 (309)
T PLN02512 45 FRGKTVVVKYGGAAMKDPELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSW--LKKVGIEPQFKNGLRVTDAETMEVVEM 122 (309)
T ss_pred HCCCeEEEEECCeeccChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHH--HHHcCCCCcCCCCCcCCCHHHHHHHHH
Confidence 467899999999999887521 1 234789999999996544 32233332 2 2333433
Q ss_pred -HHHHHHHHHHHHHHHhCCCCeEEEeccccc-----------ccc---c-hHHH-HHHHHHHhCCCEEEEeCC--C--CC
Q 021163 146 -LATVMNAIFLQATMESIGIPTRVQTAFRMS-----------EVA---E-PYIR-RRAVRHLEKGRVVIFAAG--T--GN 204 (316)
Q Consensus 146 -la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~-----------~~~---~-~~i~-~~l~~lL~~g~IPVv~g~--~--g~ 204 (316)
++..+|..+++ +|+++|++++++++.+.. ++. + ..++ +.+..+|+.|.|||++|. + +.
T Consensus 123 ~l~g~ln~~lv~-~L~~~Gv~av~l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~ 201 (309)
T PLN02512 123 VLVGKVNKSLVS-LINKAGGTAVGLSGKDGRLLRARPSPNSADLGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQ 201 (309)
T ss_pred HHhhHHHHHHHH-HHHHcCCCeEEeehhhCCEEEEEEcCcCccccccceeeecCHHHHHHHHhCCCEEEEeCceECCCCC
Confidence 56789988885 899999999988776531 111 1 0122 346789999999999985 2 22
Q ss_pred -CCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC-------CCCCchHHHHHHHHhCC
Q 021163 205 -PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENN 276 (316)
Q Consensus 205 -~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l-------G~~v~k~~Aa~~a~~~g 276 (316)
..+++|++|++||.+|+|++|+|+|||||||+++| +++++|++|+++|+.++ |.|..|++++..+.++|
T Consensus 202 ~~~i~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~~~G 278 (309)
T PLN02512 202 AYNINADTAAGEIAAALGAEKLILLTDVAGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQG 278 (309)
T ss_pred EeccCHHHHHHHHHHHcCCCEEEEEeCCcceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHcC
Confidence 34599999999999999999999999999998764 24789999999887753 45677999999999999
Q ss_pred Cc-EEEEeCCCcchHH-HHhcCCCcceEEec
Q 021163 277 IP-VVVFNLNQPGNIA-KAIQGERVGTLIGG 305 (316)
Q Consensus 277 I~-v~I~ng~~p~~i~-~~l~G~~~GT~I~~ 305 (316)
++ ++|+++..|+.+. +++.++..||+|.+
T Consensus 279 v~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~ 309 (309)
T PLN02512 279 VKTAHIIDGRVPHSLLLEILTDEGAGTMITG 309 (309)
T ss_pred CCEEEEecCCCCChHHHHHhcCCCCeeEEeC
Confidence 95 8999999998864 78888889999964
No 36
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.96 E-value=2.6e-28 Score=230.28 Aligned_cols=210 Identities=17% Similarity=0.229 Sum_probs=159.2
Q ss_pred CCCeEEEEECccccccCCCC-C----------CCCCeEEEEChhHHHHHHHHcccCCCCc--------c---HHHHHHH-
Q 021163 89 KWQRVLLKVSGEALAGDHTQ-N----------IDPKVAIVVGGGNIFRGASAAGNSGLDR--------S---SADYIGM- 145 (316)
Q Consensus 89 ~~k~iVIKiGGS~i~~~~~~-~----------~~~~vVIVhGGG~~a~G~~~l~~~gl~~--------~---~~d~v~~- 145 (316)
+.+++|||+||+++.++... . ...++|||||||++++. .++++|+.+ + .++.+.+
T Consensus 22 ~~~~~VIk~gG~~~~~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~--~~~~~g~~~~~~~G~rvT~~~~l~~~~~~ 99 (284)
T CHL00202 22 RGRIMVIKYGGAAMKNLILKADIIKDILFLSCIGLKIVVVHGGGPEINF--WLKQLNISPKFWNGIRVTDKVTMEIVEMV 99 (284)
T ss_pred cCCeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHH--HHHHCCCCCEeECCcccCCHHHHHHHHHH
Confidence 56899999999999775321 1 23578999999999544 333333332 2 2344444
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEeccccccc----------c---c-hHHH-HHHHHHHhCCCEEEEeCC----CCCC-
Q 021163 146 LATVMNAIFLQATMESIGIPTRVQTAFRMSEV----------A---E-PYIR-RRAVRHLEKGRVVIFAAG----TGNP- 205 (316)
Q Consensus 146 la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~----------~---~-~~i~-~~l~~lL~~g~IPVv~g~----~g~~- 205 (316)
++..+|..+++ +|.++|++++++++.+...+ . + ..++ +.+..+|++|.|||+++. .|..
T Consensus 100 l~g~ln~~lv~-~L~~~Gv~av~l~~~d~~~i~a~~~~~~d~~~~G~i~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~ 178 (284)
T CHL00202 100 LAGKVNKDLVG-SINANGGKAVGLCGKDANLIVARASDKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVAADHDGQTY 178 (284)
T ss_pred HhhHHHHHHHH-HHHhCCCCeeeeeeccCCEEEEEeCCCcccccceeEEecCHHHHHHHHHCCCEEEECCCccCCCCcEE
Confidence 67789999885 88999999998887654211 0 0 0123 346789999999999984 2223
Q ss_pred CCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC-------CCCCchHHHHHHHHhCCCc
Q 021163 206 FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIP 278 (316)
Q Consensus 206 ~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l-------G~~v~k~~Aa~~a~~~gI~ 278 (316)
+.++|++|+.||.+|+|++|+|+|||||||+++ .+| .++|++++++|++++ |.|..|++++..|.++|++
T Consensus 179 ni~~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~--~d~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~~a~~~Gv~ 255 (284)
T CHL00202 179 NINADVVAGEIAAKLNAEKLILLTDTPGILADI--NDP-NSLISTLNIKEARNLASTGIISGGMIPKVNCCIRALAQGVE 255 (284)
T ss_pred ecCHHHHHHHHHHHhCCCEEEEEeCChhhcCCC--CCC-CCccccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 458999999999999999999999999999842 123 479999999887654 4567799999999999986
Q ss_pred -EEEEeCCCcch-HHHHhcCCCcceEEe
Q 021163 279 -VVVFNLNQPGN-IAKAIQGERVGTLIG 304 (316)
Q Consensus 279 -v~I~ng~~p~~-i~~~l~G~~~GT~I~ 304 (316)
++|++|++|+. +.++++++..||+|.
T Consensus 256 ~v~I~~g~~~~~ll~el~~~~g~GT~i~ 283 (284)
T CHL00202 256 AAHIIDGKEKHALLLEILTEKGIGSMLV 283 (284)
T ss_pred EEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence 89999999997 478999988999985
No 37
>PRK07431 aspartate kinase; Provisional
Probab=99.96 E-value=3.2e-28 Score=250.03 Aligned_cols=207 Identities=24% Similarity=0.309 Sum_probs=161.1
Q ss_pred CeEEEEECccccccCCCC-C----------CCCCeEEEECh-hHHHHHHHHccc-C--CCCccHHHHHHHHHHHHHHHHH
Q 021163 91 QRVLLKVSGEALAGDHTQ-N----------IDPKVAIVVGG-GNIFRGASAAGN-S--GLDRSSADYIGMLATVMNAIFL 155 (316)
Q Consensus 91 k~iVIKiGGS~i~~~~~~-~----------~~~~vVIVhGG-G~~a~G~~~l~~-~--gl~~~~~d~v~~la~~lna~Lv 155 (316)
+++|+|+||+.+.+.+.. . ...++|||||+ |.+.+.+..+.. . .......+.+.+.++.+++.++
T Consensus 2 ~~iViKfGGss~~~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~~~t~~~~~~~~~~~ls~Ge~~s~~l~ 81 (587)
T PRK07431 2 ALIVQKFGGTSVGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAKEISSNPPRREMDMLLSTGEQVSIALL 81 (587)
T ss_pred CeEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHH
Confidence 478999999999765421 1 13478999995 777766643321 1 1122234556667789999999
Q ss_pred HHHHHhCCCCeEEEeccccccccc------h--HHH-HHHHHHHhCCCEEEEeCCCCC-----------CCCCchHHHHH
Q 021163 156 QATMESIGIPTRVQTAFRMSEVAE------P--YIR-RRAVRHLEKGRVVIFAAGTGN-----------PFFTTDTAAAL 215 (316)
Q Consensus 156 ~~~L~~~Gi~a~~l~~~~~~~~~~------~--~i~-~~l~~lL~~g~IPVv~g~~g~-----------~~~~sD~iAa~ 215 (316)
+++|+++|+++.++++.+...+.+ . .++ +.+.++++.|.|||++|+.|. +++++|++|++
T Consensus 82 ~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~~i~~~~~~~l~~~l~~g~vpVv~g~~g~~~~~~g~~~~lgrggsD~~A~~ 161 (587)
T PRK07431 82 SMALHELGQPAISLTGAQVGIVTESEHGRARILEIKTDRIQRHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVA 161 (587)
T ss_pred HHHHHHCCCCeEEechhHcCeEecCCCCceeeeeccHHHHHHHHhCCCeEEecCCcCCCCCCCCCEeecCCCchHHHHHH
Confidence 889999999999888765432211 1 122 356788999999999986332 25678999999
Q ss_pred HHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEeCCCcchHHH
Q 021163 216 RCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 292 (316)
Q Consensus 216 LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~ 292 (316)
||.+|+|+++++||||||||++||+.+|++++|++++++|+.++ |++++|++|+++|+++|||++|.|++. +
T Consensus 162 lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~-~---- 236 (587)
T PRK07431 162 LAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWS-D---- 236 (587)
T ss_pred HHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEecCCC-C----
Confidence 99999999999999999999999999999999999999998875 889999999999999999999999872 2
Q ss_pred HhcCCCcceEEecCC
Q 021163 293 AIQGERVGTLIGGTW 307 (316)
Q Consensus 293 ~l~G~~~GT~I~~~~ 307 (316)
..||+|.+..
T Consensus 237 -----~~GT~i~~~~ 246 (587)
T PRK07431 237 -----APGTLVTSPP 246 (587)
T ss_pred -----CCCeEEEeCC
Confidence 3599998654
No 38
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=99.96 E-value=1.8e-28 Score=221.38 Aligned_cols=220 Identities=20% Similarity=0.282 Sum_probs=172.9
Q ss_pred CCCCCCCeEEEEECccccccCCCCCCC-----------------CCeEEEEChhHHHHHHHHcccCCCC----------c
Q 021163 85 KPSYKWQRVLLKVSGEALAGDHTQNID-----------------PKVAIVVGGGNIFRGASAAGNSGLD----------R 137 (316)
Q Consensus 85 ~~~~~~k~iVIKiGGS~i~~~~~~~~~-----------------~~vVIVhGGG~~a~G~~~l~~~gl~----------~ 137 (316)
...++.+|||||+|.+++++++...+. .+-||+|++|+++-|.+.++..-+. +
T Consensus 4 ~~~kka~rIVVKLGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~~~~~s~s~r~~l~~~ 83 (285)
T KOG1154|consen 4 AFLKKAYRIVVKLGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQELLPSSSMRQTLKPQ 83 (285)
T ss_pred hhhccceEEEEEecceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEecchhhhhHHHhhhhhccchhHHHhhCCc
Confidence 456789999999999999999865321 1338888999999898877632222 1
Q ss_pred cHHHHHHHHHHHHHHHH---HHHHHHhCCCCeEEEeccccccccc--hHHH--HHHHHHHhCCCEEEEeCCCC-----CC
Q 021163 138 SSADYIGMLATVMNAIF---LQATMESIGIPTRVQTAFRMSEVAE--PYIR--RRAVRHLEKGRVVIFAAGTG-----NP 205 (316)
Q Consensus 138 ~~~d~v~~la~~lna~L---v~~~L~~~Gi~a~~l~~~~~~~~~~--~~i~--~~l~~lL~~g~IPVv~g~~g-----~~ 205 (316)
..+..++++|+..+..| |...|.++|+++. |.+.+..++.+ .+.| ..+.++|..+.|||||.++. .+
T Consensus 84 ~~l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~iA-QvLvT~~Di~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~~ 162 (285)
T KOG1154|consen 84 SELAEKRACAAVGQSGLMALYETLFTQYGITIA-QVLVTRNDILDEQQRKNLQNTISELLSMNVIPIVNENDAVSPREIP 162 (285)
T ss_pred cchhhHHHHHHhCcchHHHHHHHHHHHhccchh-eeeecCcchhhHHHHHHHHHHHHHHHhCCceeeecCCCccCCcccc
Confidence 12455677888877776 5567999999986 88888777764 2322 44678999999999999753 56
Q ss_pred CCC---chHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHh-h--------CCC--CCchHHHHHH
Q 021163 206 FFT---TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT-S--------KDL--SVMDMTAITL 271 (316)
Q Consensus 206 ~~~---sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~-~--------lG~--~v~k~~Aa~~ 271 (316)
+.+ ||++|+.+|.+++||.|+++|||||+|+.+|... ..++|+..+..+-. + .|. |-.|+.||..
T Consensus 163 ~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~~-~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tKv~AA~~ 241 (285)
T KOG1154|consen 163 FGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDAD-PSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAVN 241 (285)
T ss_pred cCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCCC-cceeeeeeccCCCCCccccCccCccCcCcchhhHHHHHH
Confidence 666 9999999999999999999999999999666544 36888888765433 1 133 4459999999
Q ss_pred HHhCCCcEEEEeCCCcchHHHHhcCCCcceEEecC
Q 021163 272 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 306 (316)
Q Consensus 272 a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~~ 306 (316)
|...|++++|+||..|++|.+++.|..+||.|...
T Consensus 242 A~~~Gv~viI~~g~~p~~I~~iv~g~kvgt~f~~~ 276 (285)
T KOG1154|consen 242 ALNAGVSVIITNGDAPENITDIVEGKKVGTFFEQL 276 (285)
T ss_pred HhcCCceEEEeCCCChHHHHHHHhhhhhhhhhhhc
Confidence 99999999999999999999999999999998753
No 39
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.96 E-value=7.1e-28 Score=252.27 Aligned_cols=216 Identities=19% Similarity=0.280 Sum_probs=165.6
Q ss_pred CCCeEEEEECccccccCCCCCCC-----------------CCeEEEEChhHHHHHHHHcccCCC---------CccHHHH
Q 021163 89 KWQRVLLKVSGEALAGDHTQNID-----------------PKVAIVVGGGNIFRGASAAGNSGL---------DRSSADY 142 (316)
Q Consensus 89 ~~k~iVIKiGGS~i~~~~~~~~~-----------------~~vVIVhGGG~~a~G~~~l~~~gl---------~~~~~d~ 142 (316)
+.+++|||+||+++++++. .++ ..-||||.+|+.+.|+..++.+++ .......
T Consensus 6 ~~~~iViKiGss~lt~~~~-~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (715)
T TIGR01092 6 DVKRIVVKVGTAVVTRGDG-RLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNSSFADLQKPQPELD 84 (715)
T ss_pred cCCEEEEEeCcceeECCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccccccccCCCCchHH
Confidence 5689999999999999752 222 122566666666669887765432 1122234
Q ss_pred HHHHHHHHHHHH---HHHHHHhCCCCeEEEeccccccccch--HH--HHHHHHHHhCCCEEEEeCCCC-----C------
Q 021163 143 IGMLATVMNAIF---LQATMESIGIPTRVQTAFRMSEVAEP--YI--RRRAVRHLEKGRVVIFAAGTG-----N------ 204 (316)
Q Consensus 143 v~~la~~lna~L---v~~~L~~~Gi~a~~l~~~~~~~~~~~--~i--~~~l~~lL~~g~IPVv~g~~g-----~------ 204 (316)
.+++++..+..| ++..|.++++.+. |.+++..++.++ +. ...+..+|++|.|||+++++. .
T Consensus 85 ~qa~aa~gq~~L~~~y~~~f~~~~i~~a-Q~Llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~~~~ 163 (715)
T TIGR01092 85 GKACAAVGQSGLMALYETMFTQLDITAA-QILVTDLDFRDEQFRRQLNETVHELLRMNVVPVVNENDAVSTRAAPYSDSQ 163 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCeeE-EEEechhhcccHHHHHHHHHHHHHHHHCCCEEEEcCCCccccccccccccc
Confidence 566777777665 5567999999986 777777776543 22 244678999999999998432 1
Q ss_pred -CCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHh-h----------CCCCCchHHHHHHH
Q 021163 205 -PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT-S----------KDLSVMDMTAITLC 272 (316)
Q Consensus 205 -~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~-~----------lG~~v~k~~Aa~~a 272 (316)
.+++||++|++||.+++|++|+++|||||||++||+ +|++++|++++..+.. + .|.|..|++|++.|
T Consensus 164 g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a 242 (715)
T TIGR01092 164 GIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWA 242 (715)
T ss_pred ceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHH
Confidence 167899999999999999999999999999999996 6899999998764332 1 14566799999999
Q ss_pred HhCCCcEEEEeCCCcchHHHHhcCCCcceEEecCC
Q 021163 273 QENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 307 (316)
Q Consensus 273 ~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~~~ 307 (316)
.++|++++|+|+++++.|.++++|+..||+|.++.
T Consensus 243 ~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~~~ 277 (715)
T TIGR01092 243 AYGGTPVIIASGTAPKNITKVVEGKKVGTLFHEDA 277 (715)
T ss_pred HHCCCeEEEeCCCCcchHHHHhcCCCCceEecccc
Confidence 99999999999999999999999998999997653
No 40
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=99.96 E-value=6.7e-28 Score=228.62 Aligned_cols=160 Identities=25% Similarity=0.301 Sum_probs=133.8
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeccccc----ccc---chH---------HHHHHHHHHhC-CCEEEE
Q 021163 136 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVA---EPY---------IRRRAVRHLEK-GRVVIF 198 (316)
Q Consensus 136 ~~~~~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~----~~~---~~~---------i~~~l~~lL~~-g~IPVv 198 (316)
+++..|.+.++|+++++.|++.+|++.|+++.++++++.. ++. ..| ...++.+.++. +.|||+
T Consensus 107 ~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~a~v~~~~~~~~l~~~l~~~~~v~Vv 186 (295)
T cd04259 107 SPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGGETMNYLSARCESEYADALLQKRLADGAQLIIT 186 (295)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeecccccccccccccceehhhhhHHHHHHHHhcCCceeEe
Confidence 4444677888999999999999999999999988875541 111 011 12345555554 679999
Q ss_pred eCCCC---------CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchH
Q 021163 199 AAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDM 266 (316)
Q Consensus 199 ~g~~g---------~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~ 266 (316)
+||.| .++++||++|+.+|.+|+|+++++||||||||++||+.+|++++|++++|+|+.++ |++++|+
T Consensus 187 ~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~~Ga~v~h~ 266 (295)
T cd04259 187 QGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLHP 266 (295)
T ss_pred CCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEeceeCHHHHHHHHHcCCcccCH
Confidence 99843 25789999999999999999999999999999999999999999999999999875 8899999
Q ss_pred HHHHHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163 267 TAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 304 (316)
Q Consensus 267 ~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~ 304 (316)
+|+++|++++||++|.|+++|+ ..||+|.
T Consensus 267 ~a~~~a~~~~ipi~i~~~~~p~---------~~GT~I~ 295 (295)
T cd04259 267 RCIPPARRANIPMVVRSTERPE---------LSGTLIT 295 (295)
T ss_pred HHHHHHHHCCCCEEEEeCCCCC---------CCCcEeC
Confidence 9999999999999999999986 4799984
No 41
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=99.96 E-value=1e-27 Score=226.95 Aligned_cols=158 Identities=24% Similarity=0.322 Sum_probs=132.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeccccc----ccc--c---hHHHHHH---HHHHhCCCEEEEeCCCC--
Q 021163 138 SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVA--E---PYIRRRA---VRHLEKGRVVIFAAGTG-- 203 (316)
Q Consensus 138 ~~~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~----~~~--~---~~i~~~l---~~lL~~g~IPVv~g~~g-- 203 (316)
+..|.+.++|+++++.+++.+|++.|+++.++++.+.. .+. + ....+++ .+.+..+.|||++||.|
T Consensus 111 ~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~ 190 (292)
T cd04258 111 ASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRTDSRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQGFIGST 190 (292)
T ss_pred HhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeEEecCCCccccccHHHHHHHHHHHHHHhhcCCEEEECCccccC
Confidence 34577888999999999999999999999988876541 111 1 1122222 22344678999999844
Q ss_pred -------CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHH
Q 021163 204 -------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQ 273 (316)
Q Consensus 204 -------~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~ 273 (316)
.++++||++|+++|.+|+|+++++||||||||++||+.+|+|+++++|+|+|+.++ |+.++||+|+.+|+
T Consensus 191 ~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~~~~ 270 (292)
T cd04258 191 EKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAI 270 (292)
T ss_pred CCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHHHHH
Confidence 25788999999999999999999999999999999999999999999999999885 89999999999999
Q ss_pred hCCCcEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163 274 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 304 (316)
Q Consensus 274 ~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~ 304 (316)
+++||++|.|.++|+ ..||+|.
T Consensus 271 ~~~ipi~i~~~~~p~---------~~GT~I~ 292 (292)
T cd04258 271 RKNIPVFVGSSKDPE---------AGGTLIT 292 (292)
T ss_pred HcCCcEEEEeCCCCC---------CCCceeC
Confidence 999999999999986 4799984
No 42
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.96 E-value=5.2e-28 Score=218.02 Aligned_cols=186 Identities=23% Similarity=0.332 Sum_probs=148.6
Q ss_pred EEEECcccccc-CCCC----CC-CCCeEEEEChhHHHHHHHHc-ccCCCCccHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 021163 94 LLKVSGEALAG-DHTQ----NI-DPKVAIVVGGGNIFRGASAA-GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPT 166 (316)
Q Consensus 94 VIKiGGS~i~~-~~~~----~~-~~~vVIVhGGG~~a~G~~~l-~~~gl~~~~~d~v~~la~~lna~Lv~~~L~~~Gi~a 166 (316)
|||||||++.+ +... .+ ..+++||+|||.||+.+... +++|+++...|+++++++++|+.+++..+...+...
T Consensus 1 vvKiGGsl~~~~~~~~~~l~~~~~~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~l~~~~~~~~~~~ 80 (203)
T cd04240 1 VVKIGGSLIREAVRLLRWLKTLSGGGVVIVPGGGPFADVVRRYQERKGLSDAAAHWMAILAMEQYGYLLADLEPRLVART 80 (203)
T ss_pred CEEEcccccccHHHHHHHHHhccCCCEEEEcCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhccCCccccCC
Confidence 79999999866 2110 12 46899999999997766422 357899999999999999999987653222121110
Q ss_pred EEEeccccccccchHHHHHHHHHHhCCCEEEEeCC------C---CCCCCCchHHHHHHHHhcCCcEEEEecccCccccc
Q 021163 167 RVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG------T---GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDD 237 (316)
Q Consensus 167 ~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~------~---g~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~ 237 (316)
..++..+++.|.|||+.+. + ..+++++|++|+++|.+|+|++|+++|||||||++
T Consensus 81 ----------------~~~~~~~~~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~ 144 (203)
T cd04240 81 ----------------LAELTDVLERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEK 144 (203)
T ss_pred ----------------HHHHHHHHHCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCC
Confidence 0346678899999999985 1 13568999999999999999999999999999986
Q ss_pred CCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcCC-CcceEE
Q 021163 238 NPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE-RVGTLI 303 (316)
Q Consensus 238 dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~-~~GT~I 303 (316)
| +++++++++.|+.. ...++..+++.+.++|++++|+|+++|+++.+++.|+ .+||+|
T Consensus 145 d------a~~i~~i~~~e~~~--~~~id~~~~~~~~~~gi~v~I~~g~~~~~l~~~l~g~~~~GT~I 203 (203)
T cd04240 145 D------GKLVNEIAAAELLG--ETSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI 203 (203)
T ss_pred C------CcCccccCHHHhCC--CCeehhhHHHHHHhCCCeEEEECCCCccHHHHHHCCCCCCCCCC
Confidence 4 79999999988753 5667777788899999999999999999999999998 789975
No 43
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.96 E-value=6.3e-28 Score=227.21 Aligned_cols=211 Identities=20% Similarity=0.259 Sum_probs=159.0
Q ss_pred CCCeEEEEECccccccCCCC-C----------CCCCeEEEEChhHHHHHHH-Hccc-----CCCCcc---HHHHHHH-HH
Q 021163 89 KWQRVLLKVSGEALAGDHTQ-N----------IDPKVAIVVGGGNIFRGAS-AAGN-----SGLDRS---SADYIGM-LA 147 (316)
Q Consensus 89 ~~k~iVIKiGGS~i~~~~~~-~----------~~~~vVIVhGGG~~a~G~~-~l~~-----~gl~~~---~~d~v~~-la 147 (316)
+.+++|||+||+++++++.. . ...++|||||+|++++.+. .++. .|+... .++...+ ++
T Consensus 22 ~~~~iViK~GGs~l~~~~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~~~~g~~~t~~~~l~~~~~a~~ 101 (283)
T PRK00942 22 MGKTIVIKYGGNAMTDEELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVNGLRVTDAETMEVVEMVLA 101 (283)
T ss_pred cCCeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcEeeCCEecCCHHHHHHHHHHHc
Confidence 56799999999999887631 1 2247899999999976543 2221 122211 1233323 33
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEeccccccccc---------------hHHH-HHHHHHHhCCCEEEEeCC----CC-CCC
Q 021163 148 TVMNAIFLQATMESIGIPTRVQTAFRMSEVAE---------------PYIR-RRAVRHLEKGRVVIFAAG----TG-NPF 206 (316)
Q Consensus 148 ~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~~~---------------~~i~-~~l~~lL~~g~IPVv~g~----~g-~~~ 206 (316)
+++|..++ ++|+++|+++.++++.+...+.. ..++ +.+..+|++|.|||+++. ++ ..+
T Consensus 102 G~l~~~i~-~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~~~~~~~g~~~~ 180 (283)
T PRK00942 102 GKVNKELV-SLINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVNPALLEALLEAGYIPVISPIGVGEDGETYN 180 (283)
T ss_pred CchHHHHH-HHHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEECHHHHHHHHHCCCEEEEcCcEECCCCcEEE
Confidence 57898877 59999999999777654321110 1123 446789999999999974 12 235
Q ss_pred CCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC-------CCCCchHHHHHHHHhCCC-c
Q 021163 207 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNI-P 278 (316)
Q Consensus 207 ~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l-------G~~v~k~~Aa~~a~~~gI-~ 278 (316)
.++|++|++||.+|+|++|+|||||||||++ ++++|++|+++|+.++ |.|..|++++..+.++|+ +
T Consensus 181 l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a~~~~~~gv~~ 254 (283)
T PRK00942 181 INADTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEELIEDGVITGGMIPKVEAALDAARGGVRS 254 (283)
T ss_pred ECHHHHHHHHHHHcCCCEEEEEECCcccccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCE
Confidence 7899999999999999999999999999986 3789999999887653 456679999999999998 5
Q ss_pred EEEEeCCCcch-HHHHhcCCCcceEEecC
Q 021163 279 VVVFNLNQPGN-IAKAIQGERVGTLIGGT 306 (316)
Q Consensus 279 v~I~ng~~p~~-i~~~l~G~~~GT~I~~~ 306 (316)
++|+|+++|++ |.++++|+.+||.|.++
T Consensus 255 v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 283 (283)
T PRK00942 255 VHIIDGRVPHALLLELFTDEGIGTMIVPD 283 (283)
T ss_pred EEEeCCCCCchHHHHHhcCCCcceEEecC
Confidence 99999999999 88999999999999863
No 44
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=99.95 E-value=7.2e-28 Score=228.33 Aligned_cols=158 Identities=27% Similarity=0.343 Sum_probs=132.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeccccc----cccc-----hHHHHHHHHHHhC-CCEEEEeCCCC----
Q 021163 138 SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVAE-----PYIRRRAVRHLEK-GRVVIFAAGTG---- 203 (316)
Q Consensus 138 ~~~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~----~~~~-----~~i~~~l~~lL~~-g~IPVv~g~~g---- 203 (316)
...|.+.++|+++++.|++.+|++.|+++..+++.+.- .... ....+.+..+++. +.|||++||.+
T Consensus 115 ~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~ 194 (294)
T cd04257 115 SIRAKVLSFGERLSARLLSALLNQQGLDAAWIDARELIVTDGGYLNAVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQ 194 (294)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHeeEecCCCCceEechHhhHHHHHHHHhcCCCEEEecCcccCCCC
Confidence 33466677899999999999999999999988876531 1111 1123445555655 89999999843
Q ss_pred -----CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHhC
Q 021163 204 -----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQEN 275 (316)
Q Consensus 204 -----~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~~ 275 (316)
.++++||++|+++|..|+|+++++||||||||++||+.+|+|++|++|+|+|+.++ |++++|++|+++|+++
T Consensus 195 G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a~~~ 274 (294)
T cd04257 195 GETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKK 274 (294)
T ss_pred CCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHC
Confidence 25788999999999999999999999999999999999999999999999998874 8899999999999999
Q ss_pred CCcEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163 276 NIPVVVFNLNQPGNIAKAIQGERVGTLIG 304 (316)
Q Consensus 276 gI~v~I~ng~~p~~i~~~l~G~~~GT~I~ 304 (316)
|||++|.|+++|+ ..||+|.
T Consensus 275 ~Ipi~i~~~~~p~---------~~GT~I~ 294 (294)
T cd04257 275 NIPILIKNTFNPE---------APGTLIS 294 (294)
T ss_pred CCCEEEeeCCCCC---------CCCCEeC
Confidence 9999999999986 4799884
No 45
>PRK08373 aspartate kinase; Validated
Probab=99.95 E-value=1.8e-27 Score=229.41 Aligned_cols=207 Identities=22% Similarity=0.354 Sum_probs=159.3
Q ss_pred CCCeEEEEECccccccCCCC------CC--CCCeEEEECh-hHHHHHHHHc-c-------------------cC------
Q 021163 89 KWQRVLLKVSGEALAGDHTQ------NI--DPKVAIVVGG-GNIFRGASAA-G-------------------NS------ 133 (316)
Q Consensus 89 ~~k~iVIKiGGS~i~~~~~~------~~--~~~vVIVhGG-G~~a~G~~~l-~-------------------~~------ 133 (316)
..+.+|.|+||+.+.+.-.. .. ..++|+|+++ |..-+....+ + .+
T Consensus 2 ~~~m~V~KFGGsSv~~~~~~v~~ii~~~~~~~~vvVVVSA~~gvTd~L~~l~~~~~~~~l~~i~~~h~~~~~~L~~~~~~ 81 (341)
T PRK08373 2 VEKMIVVKFGGSSVRYDFEEALELVKYLSEENEVVVVVSALKGVTDKLLKLAETFDKEALEEIEEIHEEFAKRLGIDLEI 81 (341)
T ss_pred CCCCEEEEECCcchHhHHHHHHHHHHHHhcCCCEEEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccchhh
Confidence 45678999999999773100 01 3478999998 3333222110 0 01
Q ss_pred -------------CC-CccHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeccccc----cccchH-------HH-HHHH
Q 021163 134 -------------GL-DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVAEPY-------IR-RRAV 187 (316)
Q Consensus 134 -------------gl-~~~~~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~----~~~~~~-------i~-~~l~ 187 (316)
.+ +++..|.+.++++++++.+++.+|+++|+++.++++++.. .+.+.. .+ +.+.
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~i~t~~~~~~a~i~~~~s~~~~~~l~ 161 (341)
T PRK08373 82 LSPYLKKLFNSRPDLPSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGNAFIDIKKSKRNVKILY 161 (341)
T ss_pred HHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHheeecCCccceeechhhhhhhHHHHH
Confidence 11 2344688889999999999999999999999988775431 111111 11 3356
Q ss_pred HHHhCCCEEEEeCCCCC--------CCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC
Q 021163 188 RHLEKGRVVIFAAGTGN--------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK 259 (316)
Q Consensus 188 ~lL~~g~IPVv~g~~g~--------~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l 259 (316)
++++.|.|||++|+.++ +++++|++|+.||++|+|+++++||||||||++||+.+|+|++|++++|+|+.++
T Consensus 162 ~~l~~g~VpVv~Gf~g~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~el 241 (341)
T PRK08373 162 ELLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIA 241 (341)
T ss_pred HHHhCCcEEEEeCCccCCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHH
Confidence 78899999999997442 3568999999999999999999999999999999999999999999999999874
Q ss_pred ---CCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEecC
Q 021163 260 ---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 306 (316)
Q Consensus 260 ---G~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~~ 306 (316)
|+.++|++|+++|++ +||++|.|.++|+ .||+|...
T Consensus 242 a~~Gakvlhp~ai~~a~~-~Ipi~v~~t~~~~----------~GT~I~~~ 280 (341)
T PRK08373 242 AKLGMKALHWKAIEPVKG-KIPIIFGRTRDWR----------MGTLVSNE 280 (341)
T ss_pred HHCcChhhhHHHHHHHHc-CCcEEEecCCCCC----------CCcEEecC
Confidence 888999999999999 9999999998763 59999754
No 46
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.95 E-value=5.7e-28 Score=227.17 Aligned_cols=209 Identities=19% Similarity=0.271 Sum_probs=156.9
Q ss_pred CCCeEEEEECccccccCCCC-C----------CCCCeEEEEChhHHHHHHHHcccCCCCc--------cH---HHHHHH-
Q 021163 89 KWQRVLLKVSGEALAGDHTQ-N----------IDPKVAIVVGGGNIFRGASAAGNSGLDR--------SS---ADYIGM- 145 (316)
Q Consensus 89 ~~k~iVIKiGGS~i~~~~~~-~----------~~~~vVIVhGGG~~a~G~~~l~~~gl~~--------~~---~d~v~~- 145 (316)
+.+++|||+||+++++++.. . ...++|||||||+++..+ ++++++.. .. .+...+
T Consensus 13 ~~~~~ViKlGGs~i~~~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~--l~~~g~~~~~~~g~r~t~~~~~~~~~~~ 90 (279)
T cd04250 13 RGKTVVIKYGGNAMKDEELKESFARDIVLLKYVGINPVVVHGGGPEINEM--LKKLGIESEFVNGLRVTDEETMEIVEMV 90 (279)
T ss_pred cCCEEEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHH--HHHCCCCCEeECCeecCCHHHHHHHHHH
Confidence 45789999999999887531 1 224789999999996543 32223322 11 233322
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEecccccccc-c-------------h------HHH-HHHHHHHhCCCEEEEeCCC--
Q 021163 146 LATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-E-------------P------YIR-RRAVRHLEKGRVVIFAAGT-- 202 (316)
Q Consensus 146 la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~~-~-------------~------~i~-~~l~~lL~~g~IPVv~g~~-- 202 (316)
+++.+|..+. +.|.++|++++++++.+...+. + . .++ ..+..+|+.|.|||+++..
T Consensus 91 ~~g~ln~~l~-~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IPVi~~~~~~ 169 (279)
T cd04250 91 LVGKVNKEIV-SLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIAPVGVG 169 (279)
T ss_pred HcCchHHHHH-HHHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccceEEEcHHHHHHHHHCCCeEEEcCCccC
Confidence 3357898875 5999999999988876532111 0 0 122 3467899999999999841
Q ss_pred --CC-CCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC-------CCCCchHHHHHHH
Q 021163 203 --GN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLC 272 (316)
Q Consensus 203 --g~-~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l-------G~~v~k~~Aa~~a 272 (316)
+. ...++|.+|+++|.+|+|++|+++|||||||++||+ ++++|++++++|+.++ |.|..|++++..+
T Consensus 170 ~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl~~a~~a 246 (279)
T cd04250 170 EDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKVEACIEA 246 (279)
T ss_pred CCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 11 246899999999999999999999999999999884 3799999999887653 4566799999999
Q ss_pred HhCCCc-EEEEeCCCcchH-HHHhcCCCcceEE
Q 021163 273 QENNIP-VVVFNLNQPGNI-AKAIQGERVGTLI 303 (316)
Q Consensus 273 ~~~gI~-v~I~ng~~p~~i-~~~l~G~~~GT~I 303 (316)
.++|++ ++|+|+++|+.+ .++++++..||.|
T Consensus 247 ~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 247 LEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred HHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 999986 999999999964 7889988899975
No 47
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=99.95 E-value=1.2e-27 Score=226.81 Aligned_cols=158 Identities=28% Similarity=0.376 Sum_probs=132.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeccccc----cccch---HH--HHHHHHHHhC-CCEEEEeCCCC----
Q 021163 138 SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVAEP---YI--RRRAVRHLEK-GRVVIFAAGTG---- 203 (316)
Q Consensus 138 ~~~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~----~~~~~---~i--~~~l~~lL~~-g~IPVv~g~~g---- 203 (316)
...|.+.++||++++.|++.+|++.|+++..+++...- ...+. +. ...+..+++. +.|||++||.+
T Consensus 114 ~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~s~~~~~~~~~~~~~v~Vv~Gfig~~~~ 193 (293)
T cd04243 114 KTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELLLTDDGFLNAVVDLKLSKERLAQLLAEHGKVVVTQGFIASNED 193 (293)
T ss_pred hhhhHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeEEecCCCCcchhhhHHHHHHHHHHHhcCCCEEEecCccccCCC
Confidence 34566777899999999999999999999988875431 11111 11 2345566665 89999999843
Q ss_pred -----CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHhC
Q 021163 204 -----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQEN 275 (316)
Q Consensus 204 -----~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~~ 275 (316)
.++++||++|+++|.+++|+++++||||||||++||+.+|++++|++++|+|+.++ |+.++|++|+++|+++
T Consensus 194 G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a~~~ 273 (293)
T cd04243 194 GETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRK 273 (293)
T ss_pred CCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHC
Confidence 24688999999999999999999999999999999999999999999999999874 8899999999999999
Q ss_pred CCcEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163 276 NIPVVVFNLNQPGNIAKAIQGERVGTLIG 304 (316)
Q Consensus 276 gI~v~I~ng~~p~~i~~~l~G~~~GT~I~ 304 (316)
+||++|.|+++|+ ..||+|.
T Consensus 274 ~i~i~i~~~~~p~---------~~GT~I~ 293 (293)
T cd04243 274 NIPIFIKNTFNPE---------APGTLIS 293 (293)
T ss_pred CCcEEEecCCCCC---------CCCCEeC
Confidence 9999999999986 4799984
No 48
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=99.95 E-value=1.7e-27 Score=236.98 Aligned_cols=158 Identities=27% Similarity=0.348 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeccccccc-----cc-----hHHHHHHHHHHhCCCEEEEeCCCC------
Q 021163 140 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----AE-----PYIRRRAVRHLEKGRVVIFAAGTG------ 203 (316)
Q Consensus 140 ~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~-----~~-----~~i~~~l~~lL~~g~IPVv~g~~g------ 203 (316)
.|.+.++|+++++.+++.+|+++|++++++++.+...+ .+ ....+.+..+++.|.|||++|+.+
T Consensus 105 ~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~~~~~~~l~~~l~~~~vpVv~G~~g~~~~g~ 184 (441)
T TIGR00657 105 MDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLEEGIIPVVAGFQGATEKGE 184 (441)
T ss_pred HhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecHhhhHHHHHHHHhcCCEEEEeCcEeeCCCCC
Confidence 35556679999999999999999999998887654221 11 111244667889999999999622
Q ss_pred ---CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHhCCC
Q 021163 204 ---NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNI 277 (316)
Q Consensus 204 ---~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~~gI 277 (316)
..++++|++|+++|.+|+|+++++||||||||++||+.+|+++++++++|+|+.++ |++++|++|+++|.+++|
T Consensus 185 ~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G~~v~~~~a~~~~~~~~i 264 (441)
T TIGR00657 185 TTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKI 264 (441)
T ss_pred EeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcCCcccCHHHHHHHHHcCC
Confidence 13568999999999999999999999999999999999999999999999998875 889999999999999999
Q ss_pred cEEEEeCCCcchHHHHhcCCCcceEEecC
Q 021163 278 PVVVFNLNQPGNIAKAIQGERVGTLIGGT 306 (316)
Q Consensus 278 ~v~I~ng~~p~~i~~~l~G~~~GT~I~~~ 306 (316)
|++|.|+++|+ ..||+|.+.
T Consensus 265 ~i~i~~~~~~~---------~~GT~I~~~ 284 (441)
T TIGR00657 265 PIVVKSTFNPE---------APGTLIVAS 284 (441)
T ss_pred eEEEecCCCCC---------CCceEEEeC
Confidence 99999999885 469999865
No 49
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.95 E-value=1.1e-27 Score=222.88 Aligned_cols=199 Identities=21% Similarity=0.317 Sum_probs=152.5
Q ss_pred EEEEECccccccCCCC-----CCCCCeEEEEChhHHHHHHHHcccCCCCc----------------cHHHHHHHHHHHHH
Q 021163 93 VLLKVSGEALAGDHTQ-----NIDPKVAIVVGGGNIFRGASAAGNSGLDR----------------SSADYIGMLATVMN 151 (316)
Q Consensus 93 iVIKiGGS~i~~~~~~-----~~~~~vVIVhGGG~~a~G~~~l~~~gl~~----------------~~~d~v~~la~~ln 151 (316)
+|||+||+++++.+.. .+..++|+|||||++++. .++++++++ ..++.+.+..+.+|
T Consensus 1 ~VIKlGGs~l~~~~~~~~~i~~lg~~~VlVHGgg~~i~~--~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~~a~~~ln 78 (257)
T cd04251 1 IVVKIGGSVVSDLDKVIDDIANFGERLIVVHGGGNYVNE--YLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVMGLIN 78 (257)
T ss_pred CEEEEChHHhhChHHHHHHHHHcCCCEEEECCCHHHHHH--HHHHcCCCcEEEeCCCCCccccCCHHHHHHHHHHHHHHH
Confidence 5999999999865321 123589999999999544 333333322 22345555458999
Q ss_pred HHHHHHHHHhCCCCeEEEeccccccc------------------------cc-hHHH-HHHHHHHhCCCEEEEeCC----
Q 021163 152 AIFLQATMESIGIPTRVQTAFRMSEV------------------------AE-PYIR-RRAVRHLEKGRVVIFAAG---- 201 (316)
Q Consensus 152 a~Lv~~~L~~~Gi~a~~l~~~~~~~~------------------------~~-~~i~-~~l~~lL~~g~IPVv~g~---- 201 (316)
..+++ .|+++|+++.++++.+...+ .+ ..++ +.+..+|+.|.|||+++.
T Consensus 79 ~~iv~-~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~vpVi~~~~~~~ 157 (257)
T cd04251 79 KKIVA-RLHSLGVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVVSPVAYSE 157 (257)
T ss_pred HHHHH-HHHhCCCCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCCeEEEeCcEECC
Confidence 99886 99999999998877553110 00 0122 446789999999999885
Q ss_pred CC-CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC-----CCCCchHHHHHHHHhC
Q 021163 202 TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVMDMTAITLCQEN 275 (316)
Q Consensus 202 ~g-~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l-----G~~v~k~~Aa~~a~~~ 275 (316)
.| ..+.++|++|+++|.+|+|++|+|+|||||||++ +++|++++++|++++ |.|..|++++..+.++
T Consensus 158 ~G~~~~i~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~~~ggm~~Kl~aa~~a~~~ 230 (257)
T cd04251 158 EGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYLD-------GRVIERITVSDAESLLEKAGGGMKRKLLAAAEAVEG 230 (257)
T ss_pred CCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhheeC-------CcccCccCHHHHHHHHhhCCCchHHHHHHHHHHHHc
Confidence 12 2356899999999999999999999999999973 689999999887764 6678899999999999
Q ss_pred CC-cEEEEeCCCcchHHHHhcCCCcceEE
Q 021163 276 NI-PVVVFNLNQPGNIAKAIQGERVGTLI 303 (316)
Q Consensus 276 gI-~v~I~ng~~p~~i~~~l~G~~~GT~I 303 (316)
|+ +++|+++++|+++.++++|+ ||.|
T Consensus 231 gv~~v~i~~g~~~~~l~~~l~g~--gT~i 257 (257)
T cd04251 231 GVREVVIGDARADSPISSALNGG--GTVI 257 (257)
T ss_pred CCCEEEEecCCCccHHHHHHcCC--CcCC
Confidence 98 58999999999999999885 9875
No 50
>PRK06291 aspartate kinase; Provisional
Probab=99.95 E-value=4.3e-27 Score=235.76 Aligned_cols=161 Identities=27% Similarity=0.329 Sum_probs=136.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeccccccc-----c--------chHHHHHHHHHHhCCCEEEEeCCCC
Q 021163 137 RSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----A--------EPYIRRRAVRHLEKGRVVIFAAGTG 203 (316)
Q Consensus 137 ~~~~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~-----~--------~~~i~~~l~~lL~~g~IPVv~g~~g 203 (316)
++..|.+.++||++++.|++++|++.|+++.++++.+...+ . ..++...+..+++.|.|||++|+.+
T Consensus 119 ~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vpVv~Gfig 198 (465)
T PRK06291 119 PRSRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKERLEPLLKEGVIPVVTGFIG 198 (465)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEEecCCCCceeechhhHHHHHHHHHHHhhcCcEEEEeCcEE
Confidence 33457788899999999999999999999999887664211 1 1223344566788999999999622
Q ss_pred ---------CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHH
Q 021163 204 ---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITL 271 (316)
Q Consensus 204 ---------~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~ 271 (316)
..++++|++|+++|.+|+|+++++||||||||++||+.+|+++++++++|+|+.++ |++++|++|+.+
T Consensus 199 ~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~~~a~~~ 278 (465)
T PRK06291 199 ETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEP 278 (465)
T ss_pred cCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccCHHHHHH
Confidence 24679999999999999999999999999999999999999999999999998875 899999999999
Q ss_pred HHhCCCcEEEEeCCCcchHHHHhcCCCcceEEecC
Q 021163 272 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 306 (316)
Q Consensus 272 a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~~ 306 (316)
|+++|||++|.|+++|+ ..||+|...
T Consensus 279 ~~~~~i~i~i~~~~~~~---------~~gt~i~~~ 304 (465)
T PRK06291 279 AMEKGIPVRVKNTFNPE---------FPGTLITSD 304 (465)
T ss_pred HHHcCCcEEEecCCCCC---------CCceEEEec
Confidence 99999999999999885 479999754
No 51
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.95 E-value=9.5e-27 Score=216.14 Aligned_cols=212 Identities=21% Similarity=0.296 Sum_probs=166.2
Q ss_pred CCCeEEEEECccccccCCCC-C----------CCCCeEEEEChhHHHHHH-HHccc-----CCCCcc---HHHHHHH-HH
Q 021163 89 KWQRVLLKVSGEALAGDHTQ-N----------IDPKVAIVVGGGNIFRGA-SAAGN-----SGLDRS---SADYIGM-LA 147 (316)
Q Consensus 89 ~~k~iVIKiGGS~i~~~~~~-~----------~~~~vVIVhGGG~~a~G~-~~l~~-----~gl~~~---~~d~v~~-la 147 (316)
+.|++|||+||+++.+++.. . ...+.|||||||++++.+ ..++. .|++.+ .++.+.+ ++
T Consensus 1 ~~k~~VIK~GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tlevv~mvl~ 80 (265)
T COG0548 1 RGKTIVIKLGGSAMEDENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLEVVEMVLG 80 (265)
T ss_pred CCceEEEEECceeecCchHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHHHHHHHHH
Confidence 36899999999999997521 1 223679999999999887 34431 344433 3455555 77
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEecccccccc----------------c-hHHHHH-HHHHHhCCCEEEEeCC----CCCC
Q 021163 148 TVMNAIFLQATMESIGIPTRVQTAFRMSEVA----------------E-PYIRRR-AVRHLEKGRVVIFAAG----TGNP 205 (316)
Q Consensus 148 ~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~~----------------~-~~i~~~-l~~lL~~g~IPVv~g~----~g~~ 205 (316)
+.+|..|++ .|+.+|..++++++.+...+. + ..+|.. +..++++++|||+++. +|..
T Consensus 81 G~vNk~iva-~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia~~~~G~~ 159 (265)
T COG0548 81 GTVNKEIVA-RLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAVDEDGET 159 (265)
T ss_pred HHHHHHHHH-HHHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecceECCCCcE
Confidence 799999996 899999999988887643221 0 113444 5678999999999984 4444
Q ss_pred -CCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC-------CCCCchHHHHHHHHhCCC
Q 021163 206 -FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNI 277 (316)
Q Consensus 206 -~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l-------G~~v~k~~Aa~~a~~~gI 277 (316)
+++.|++|..+|.+|+|++|+++|||+|||+++|+ .++|++++.+|++++ |.|+.|+++|..|.+.|+
T Consensus 160 ~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~----~s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv 235 (265)
T COG0548 160 LNVNADTAAGALAAALKAEKLILLTDVPGVLDDKGD----PSLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGV 235 (265)
T ss_pred EeeCHHHHHHHHHHHcCCCeEEEEeCCcccccCCCC----ceeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999997652 269999999988764 467889999999999999
Q ss_pred -cEEEEeCCCcchHH-HHhcCCCcceEEec
Q 021163 278 -PVVVFNLNQPGNIA-KAIQGERVGTLIGG 305 (316)
Q Consensus 278 -~v~I~ng~~p~~i~-~~l~G~~~GT~I~~ 305 (316)
+++|+|++.++.+. +++.++.+||.|.+
T Consensus 236 ~~v~ii~g~~~~~ll~eLFt~~giGT~i~~ 265 (265)
T COG0548 236 RRVHIISGRVPHSLLLELFTRDGIGTMIVR 265 (265)
T ss_pred CeEEEecCCCcchHHHHHhcCCCcceEecC
Confidence 59999999999965 68899999999863
No 52
>PLN02551 aspartokinase
Probab=99.95 E-value=7.6e-27 Score=236.31 Aligned_cols=162 Identities=25% Similarity=0.303 Sum_probs=134.7
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeccccccc-----cchHH----HHHHHHHH-----hCCCEEEEeCC
Q 021163 136 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----AEPYI----RRRAVRHL-----EKGRVVIFAAG 201 (316)
Q Consensus 136 ~~~~~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~-----~~~~i----~~~l~~lL-----~~g~IPVv~g~ 201 (316)
+++..|.+..+|+++++.|++.+|++.|+++.++++++.+.+ .+..+ ..++.+.+ +.+.|||++||
T Consensus 161 ~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GF 240 (521)
T PLN02551 161 TPRTRDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGF 240 (521)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCc
Confidence 344557888899999999999999999999999887765322 11111 12232222 35689999998
Q ss_pred CC----------CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHH
Q 021163 202 TG----------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTA 268 (316)
Q Consensus 202 ~g----------~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~A 268 (316)
.| .+++++|++|+.||++|+|+++.+||||||||++|||.+|+|++|++|+|+|+.++ |++++||+|
T Consensus 241 ig~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~a 320 (521)
T PLN02551 241 LGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQS 320 (521)
T ss_pred cccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHHH
Confidence 44 24688999999999999999999999999999999999999999999999999986 999999999
Q ss_pred HHHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEecC
Q 021163 269 ITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 306 (316)
Q Consensus 269 a~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~~ 306 (316)
+++|++++||++|.|.++|+ ..||+|...
T Consensus 321 i~pa~~~~Ipi~vknt~~p~---------~~GT~I~~~ 349 (521)
T PLN02551 321 MRPAREGDIPVRVKNSYNPT---------APGTLITKT 349 (521)
T ss_pred HHHHHHCCceEEEEecCCCC---------CCCcEEecc
Confidence 99999999999999999885 479999754
No 53
>PRK09034 aspartate kinase; Reviewed
Probab=99.95 E-value=9.3e-27 Score=232.70 Aligned_cols=162 Identities=22% Similarity=0.293 Sum_probs=136.0
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecccccccc-----c-hHH---HHHHHHHHhCCCEEEEeCCCC---
Q 021163 136 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-----E-PYI---RRRAVRHLEKGRVVIFAAGTG--- 203 (316)
Q Consensus 136 ~~~~~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~~-----~-~~i---~~~l~~lL~~g~IPVv~g~~g--- 203 (316)
+++..|.+...|+++++.+++.+|++.|+++.++++++.+.+. + ... ...+..++..+.|||++||.|
T Consensus 108 ~~~~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~ 187 (454)
T PRK09034 108 PDRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDEKLVIPGFFGVTK 187 (454)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcHhhHHHHHHHHhcCCEEEecCccccCC
Confidence 3344577888999999999999999999999988876653221 1 111 123444556778999999844
Q ss_pred ------CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHh
Q 021163 204 ------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQE 274 (316)
Q Consensus 204 ------~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~ 274 (316)
.+++++|++|+++|++|+|+++.+||||||||++|||.+|+|+.+++|+|+|+.++ |+.++||+|+++|++
T Consensus 188 ~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~ 267 (454)
T PRK09034 188 DGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYR 267 (454)
T ss_pred CCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHH
Confidence 25789999999999999999999999999999999999999999999999999985 999999999999999
Q ss_pred CCCcEEEEeCCCcchHHHHhcCCCcceEEecC
Q 021163 275 NNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 306 (316)
Q Consensus 275 ~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~~ 306 (316)
++||++|.|.++|+ ..||+|...
T Consensus 268 ~~Ipi~v~~~~~p~---------~~GT~I~~~ 290 (454)
T PRK09034 268 GGIPINIKNTNNPE---------DPGTLIVPD 290 (454)
T ss_pred cCCCEEEEcCCCCC---------CCccEEEec
Confidence 99999999999885 469999754
No 54
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.95 E-value=6.3e-27 Score=245.03 Aligned_cols=217 Identities=21% Similarity=0.292 Sum_probs=164.6
Q ss_pred CCCCeEEEEECccccccCCCCCCC-----------------CCeEEEEChhHHHHHHHHcccCC--------C--CccHH
Q 021163 88 YKWQRVLLKVSGEALAGDHTQNID-----------------PKVAIVVGGGNIFRGASAAGNSG--------L--DRSSA 140 (316)
Q Consensus 88 ~~~k~iVIKiGGS~i~~~~~~~~~-----------------~~vVIVhGGG~~a~G~~~l~~~g--------l--~~~~~ 140 (316)
.++|++|||+||+++++.+. .++ ..-||||.+|+.+.|...++... + +....
T Consensus 13 ~~~~~iViK~G~ssl~~~~~-~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~~l~~~~~~~~~~~~~~~~~~~~ 91 (718)
T PLN02418 13 RDVKRVVIKVGTAVVTRDDG-RLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQRLRYRRLVNSSFADLQKPQMEL 91 (718)
T ss_pred hhCCEEEEEeCCCeecCCCC-CccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHhhhhhhhcccccCCCCcchH
Confidence 46789999999999998752 111 13378888888877776554211 1 22234
Q ss_pred H--HHHHHHHHHHHHHHHHHHHhCCCCeEEEeccccccccc--hHH--HHHHHHHHhCCCEEEEeCCCC-----C-----
Q 021163 141 D--YIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE--PYI--RRRAVRHLEKGRVVIFAAGTG-----N----- 204 (316)
Q Consensus 141 d--~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~~~--~~i--~~~l~~lL~~g~IPVv~g~~g-----~----- 204 (316)
+ .+.+.++.....+|+.+|+++|+++. |.+.+..++.+ .+. ...+..+|+.|.|||+++++. .
T Consensus 92 ~~qa~aa~Gq~~l~~~~~~~f~~~g~~~~-qillT~~~~~~~~~~~~~~~~l~~ll~~g~iPVv~~nd~v~~~~~~~~~~ 170 (718)
T PLN02418 92 DGKACAAVGQSELMALYDTLFSQLDVTAS-QLLVTDSDFRDPDFRKQLSETVESLLDLRVIPIFNENDAVSTRRAPYEDS 170 (718)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCeEE-EEEecHhHhcchhHhHhHHHHHHHHHHCCCEEEEcCCCCccccccccccc
Confidence 4 22345556666678889999999876 66666666643 222 244678999999999998522 1
Q ss_pred --CCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhh-----------CCCCCchHHHHHH
Q 021163 205 --PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS-----------KDLSVMDMTAITL 271 (316)
Q Consensus 205 --~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~-----------lG~~v~k~~Aa~~ 271 (316)
.+++||++|++||.+++|++|+|+|||||||++||+ +|++++|++++..+... .|.|..|++|+..
T Consensus 171 ~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~ 249 (718)
T PLN02418 171 SGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVN 249 (718)
T ss_pred cCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHH
Confidence 245799999999999999999999999999999997 58999999997544211 1456679999999
Q ss_pred HHhCCCcEEEEeCCCcchHHHHhcCCCcceEEecCC
Q 021163 272 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 307 (316)
Q Consensus 272 a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~~~ 307 (316)
|.++|++++|+||++|+.|.++++|+..||+|.++.
T Consensus 250 a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 285 (718)
T PLN02418 250 AASAGIPVVITSGYALDNIRKVLRGERVGTLFHQDA 285 (718)
T ss_pred HHHCCCcEEEeCCCCcchHHHHhcCCCCceEecccc
Confidence 999999999999999999999999999999998743
No 55
>PRK09084 aspartate kinase III; Validated
Probab=99.95 E-value=6.7e-27 Score=233.34 Aligned_cols=161 Identities=22% Similarity=0.310 Sum_probs=134.7
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecccc----ccccc--h---HHH----HHHHHHHhCCCEEEEeCCC
Q 021163 136 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM----SEVAE--P---YIR----RRAVRHLEKGRVVIFAAGT 202 (316)
Q Consensus 136 ~~~~~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~----~~~~~--~---~i~----~~l~~lL~~g~IPVv~g~~ 202 (316)
+++..|.+...||++++.+++.+|++.|+++.++++.+. ..+.+ + .+. ..+..+++.+ +||++||.
T Consensus 105 ~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf~ 183 (448)
T PRK09084 105 SPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMRTDDRFGRAEPDVAALAELAQEQLLPLLAEG-VVVTQGFI 183 (448)
T ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeEEecCCCCcccccHHHHHHHHHHHHHHhhcCC-cEEecCee
Confidence 344567788899999999999999999999998877554 12111 1 122 2234466777 99999973
Q ss_pred C---------CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHH
Q 021163 203 G---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAIT 270 (316)
Q Consensus 203 g---------~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~ 270 (316)
| .++++||++|+++|+.|+|+++++||||||||++||+.+|+|+++++|+|+|+.++ |+.++|+.++.
T Consensus 184 g~~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~~ 263 (448)
T PRK09084 184 GSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLL 263 (448)
T ss_pred ecCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHH
Confidence 3 35689999999999999999999999999999999999999999999999999885 88999999999
Q ss_pred HHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEecC
Q 021163 271 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 306 (316)
Q Consensus 271 ~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~~ 306 (316)
+|++++||++|.|+++|+ ..||+|...
T Consensus 264 ~~~~~~i~i~i~~~~~~~---------~~GT~I~~~ 290 (448)
T PRK09084 264 PAVRSNIPVFVGSSKDPE---------AGGTWICND 290 (448)
T ss_pred HHHHcCCcEEEEeCCCCC---------CCceEEecC
Confidence 999999999999999986 479999754
No 56
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.95 E-value=2.8e-27 Score=219.64 Aligned_cols=202 Identities=22% Similarity=0.283 Sum_probs=152.6
Q ss_pred EEEEECccccccCCC-CC----------CCCCeEEEEChhHHHHHHHHcccCCCC-----------ccHHHHHHH-HHHH
Q 021163 93 VLLKVSGEALAGDHT-QN----------IDPKVAIVVGGGNIFRGASAAGNSGLD-----------RSSADYIGM-LATV 149 (316)
Q Consensus 93 iVIKiGGS~i~~~~~-~~----------~~~~vVIVhGGG~~a~G~~~l~~~gl~-----------~~~~d~v~~-la~~ 149 (316)
+|||+||+++++++. .. ...++|||||+|++.+.+ ++++++. +...+.+.+ ++++
T Consensus 1 ~ViKlGGs~l~~~~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~--~~~~~~~~~~~~~~r~t~~~~l~~~~~a~~g~ 78 (256)
T cd04238 1 VVIKYGGSAMKDEELKEAFADDIVLLKQVGINPVIVHGGGPEINEL--LKRLGIESEFVNGLRVTDKETMEIVEMVLAGK 78 (256)
T ss_pred CEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHH--HHHCCCCCEeECCeecCCHHHHHHHHHHHcCc
Confidence 599999999998753 11 235789999999995443 3333332 122344444 3268
Q ss_pred HHHHHHHHHHHhCCCCeEEEeccccccccc-h---------H------HH-HHHHHHHhCCCEEEEeCC--CC---CCCC
Q 021163 150 MNAIFLQATMESIGIPTRVQTAFRMSEVAE-P---------Y------IR-RRAVRHLEKGRVVIFAAG--TG---NPFF 207 (316)
Q Consensus 150 lna~Lv~~~L~~~Gi~a~~l~~~~~~~~~~-~---------~------i~-~~l~~lL~~g~IPVv~g~--~g---~~~~ 207 (316)
+|..+. ++|.++|+++.++++.+...+.. + | ++ ..+..+|+.|.|||+++. ++ ..+.
T Consensus 79 ln~~i~-~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~~~~~~g~~~~~ 157 (256)
T cd04238 79 VNKELV-SLLNRAGGKAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPIAVDEDGETYNV 157 (256)
T ss_pred hHHHHH-HHHHhCCCCCCCcccccCCEEEEEECCCCCCCcccccceEEECHHHHHHHHHCCCEEEECCcEECCCCcEEEE
Confidence 998885 59999999999877765321110 0 1 22 346789999999999984 11 2467
Q ss_pred CchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC-------CCCCchHHHHHHHHhCCC-cE
Q 021163 208 TTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNI-PV 279 (316)
Q Consensus 208 ~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l-------G~~v~k~~Aa~~a~~~gI-~v 279 (316)
++|++|+++|.+|+|++|+|||||||||++ ++++|++++++|+.++ |.|..|++++..+.++|+ ++
T Consensus 158 ~~D~~A~~lA~~l~a~~li~ltdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~g~~~v 231 (256)
T cd04238 158 NADTAAGAIAAALKAEKLILLTDVPGVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKV 231 (256)
T ss_pred CHHHHHHHHHHHcCCCEEEEEeCCccccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCEE
Confidence 899999999999999999999999999986 2789999999887653 456679999999999887 59
Q ss_pred EEEeCCCcchHHHHhcC-CCcceEE
Q 021163 280 VVFNLNQPGNIAKAIQG-ERVGTLI 303 (316)
Q Consensus 280 ~I~ng~~p~~i~~~l~G-~~~GT~I 303 (316)
+|+|+++|++|.+++.| +..||+|
T Consensus 232 ~I~~g~~~~~l~~~l~~~~~~GT~i 256 (256)
T cd04238 232 HIIDGRVPHSLLLELFTDEGIGTMI 256 (256)
T ss_pred EEeCCCCCcHHHHHHhcCCCCCCCC
Confidence 99999999999999887 5689975
No 57
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=99.94 E-value=2.6e-26 Score=220.24 Aligned_cols=155 Identities=24% Similarity=0.364 Sum_probs=126.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeccccc----cccc-----hH--HH-HHHHHHHhCCCEEEEeCCCCC-
Q 021163 138 SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVAE-----PY--IR-RRAVRHLEKGRVVIFAAGTGN- 204 (316)
Q Consensus 138 ~~~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~----~~~~-----~~--i~-~~l~~lL~~g~IPVv~g~~g~- 204 (316)
...|++.++++++++.|++ .|+++.++++++.- .+.+ +. .+ +.+..+++.|.|||++|+.++
T Consensus 95 ~~~d~I~s~GE~lSa~Lla-----~gi~a~~vd~~~~i~t~~~~~~a~~~~~~~~~~~~~l~~~l~~g~IpVv~Gf~~~~ 169 (327)
T TIGR02078 95 ALRDYILSLGERLSAVIFA-----EGINGKVVDPWDIFFAKGDFGNAFIDIKKSKRNAKILYEVLESGKIPVIPGFYGNL 169 (327)
T ss_pred HHHHHHHHHHHHHHHHHHH-----ccCCcEEEcHHHHhccCCcCCceeechhhhHhhHHHHHHHHhCCcEEEEeCCccCC
Confidence 3568888899999988776 38888877765431 1111 11 11 234567889999999997432
Q ss_pred -------CCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHh
Q 021163 205 -------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQE 274 (316)
Q Consensus 205 -------~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~ 274 (316)
++++||++|+++|.+|+|+++++||||||||++||+.+|++++|++++|+|+.++ |+.++|++|+++|.+
T Consensus 170 ~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a~~~a~~ 249 (327)
T TIGR02078 170 NGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKE 249 (327)
T ss_pred CCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHHHCCchhhHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999998864 778899999999999
Q ss_pred CCCcEEEEeCCCcchHHHHhcCCCcceEEecCC
Q 021163 275 NNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 307 (316)
Q Consensus 275 ~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~~~ 307 (316)
+|||++|.|.++|+ .||+|....
T Consensus 250 ~~Ipi~I~~t~~~~----------~GT~I~~~~ 272 (327)
T TIGR02078 250 YKIPVLFGRTRDWR----------MGTLISNRS 272 (327)
T ss_pred CCCeEEEEeCCCcC----------CCcEEecCC
Confidence 99999999998773 599997543
No 58
>PRK05925 aspartate kinase; Provisional
Probab=99.94 E-value=1.4e-26 Score=230.25 Aligned_cols=161 Identities=19% Similarity=0.212 Sum_probs=134.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecccccccc----c-----hHHHHHHHH-HHhCCCEEEEeCCCC---
Q 021163 137 RSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA----E-----PYIRRRAVR-HLEKGRVVIFAAGTG--- 203 (316)
Q Consensus 137 ~~~~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~~----~-----~~i~~~l~~-lL~~g~IPVv~g~~g--- 203 (316)
+...|.+.++||++++.|++.+|++.|+++.++++++..... + ..+.+.+.+ .++.+.|||++||.|
T Consensus 99 ~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~ 178 (440)
T PRK05925 99 SEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQVILTDDQYLRAVPDLALMQTAWHELALQEDAIYIMQGFIGANS 178 (440)
T ss_pred chhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHhEeecCCccccccCHHHHHHHHHHhhccCCcEEEecCcceeCC
Confidence 344577778999999999999999999999988876542111 1 122233332 346678999999843
Q ss_pred ------CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHh
Q 021163 204 ------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQE 274 (316)
Q Consensus 204 ------~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~ 274 (316)
.++++||++|+++|.+++|+.+++||||||||++||+.+|+|++|++++|+|+.++ |+.++++.++++|.+
T Consensus 179 ~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~~Ga~vl~~~~~~~a~~ 258 (440)
T PRK05925 179 SGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVR 258 (440)
T ss_pred CCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHhCCCCcCCHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999875 788999999999999
Q ss_pred CCCcEEEEeCCCcchHHHHhcCCCcceEEecC
Q 021163 275 NNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 306 (316)
Q Consensus 275 ~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~~ 306 (316)
+|||++|.|+++|+ ..||+|.+.
T Consensus 259 ~~Ipi~I~~~~~p~---------~~GT~i~~~ 281 (440)
T PRK05925 259 AGIPIFVTSTFDVT---------KGGTWIYAS 281 (440)
T ss_pred CCCcEEEecCCCCC---------CCccEEecC
Confidence 99999999999987 369999764
No 59
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.94 E-value=9.4e-27 Score=215.75 Aligned_cols=203 Identities=20% Similarity=0.247 Sum_probs=149.2
Q ss_pred EEEEECccccccCCCC-C-----------CCCCeEEEEChhHHHHHHH-Hccc-----CCCCc---cHHHHHHH-HHHHH
Q 021163 93 VLLKVSGEALAGDHTQ-N-----------IDPKVAIVVGGGNIFRGAS-AAGN-----SGLDR---SSADYIGM-LATVM 150 (316)
Q Consensus 93 iVIKiGGS~i~~~~~~-~-----------~~~~vVIVhGGG~~a~G~~-~l~~-----~gl~~---~~~d~v~~-la~~l 150 (316)
+|||+||+++++++.. . ...++|||||||++.+... .++. ++++. ...+.+.+ +++.+
T Consensus 1 ~ViK~GGs~l~~~~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~~~~ 80 (252)
T cd04249 1 LVIKLGGALLETEAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYITGALAGTA 80 (252)
T ss_pred CEEEEChHHhcChhhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHHHHHcCcc
Confidence 4899999999876421 1 1247899999999965542 2221 23322 23444444 45789
Q ss_pred HHHHHHHHHHhCCCCeEEEecccccccc------------c-hHHH-HHHHHHHhCCCEEEEeCC----CC-CCCCCchH
Q 021163 151 NAIFLQATMESIGIPTRVQTAFRMSEVA------------E-PYIR-RRAVRHLEKGRVVIFAAG----TG-NPFFTTDT 211 (316)
Q Consensus 151 na~Lv~~~L~~~Gi~a~~l~~~~~~~~~------------~-~~i~-~~l~~lL~~g~IPVv~g~----~g-~~~~~sD~ 211 (316)
|..++++ +.++|++++++++.+...+. + ..++ +.+..+++.|.|||+++. .+ ..+.++|+
T Consensus 81 n~~lv~~-l~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~ 159 (252)
T cd04249 81 NKQLMAQ-AIKAGLKPVGLSLADGGMTAVTQLDPELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQLMNVNADQ 159 (252)
T ss_pred cHHHHHH-HHhCCCCceeeeccCCCEEEEEEcCCCCCcccceEEEcHHHHHHHHHCCCEEEECCCEECCCCCEeeecHHH
Confidence 9999974 45899999988776532111 0 0122 346779999999999974 12 34678999
Q ss_pred HHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC-------CCCCchHHHHHHHHhC-CCcEEEEe
Q 021163 212 AAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQEN-NIPVVVFN 283 (316)
Q Consensus 212 iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l-------G~~v~k~~Aa~~a~~~-gI~v~I~n 283 (316)
+|+++|..|+|+ ++++|||||||++|| ++|++++++|++++ |.|..|++++..+.+. +++++|++
T Consensus 160 ~A~~lA~~l~A~-~i~ltdv~Gv~~~~~------~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~ 232 (252)
T cd04249 160 AATAIAQLLNAD-LVLLSDVSGVLDADK------QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIAS 232 (252)
T ss_pred HHHHHHHHcCCC-EEEEeCCcccCCCCC------cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCCCeEEEEe
Confidence 999999999999 689999999998754 68999998887653 3456688888877665 57899999
Q ss_pred CCCcchHHHHhcCCCcceEE
Q 021163 284 LNQPGNIAKAIQGERVGTLI 303 (316)
Q Consensus 284 g~~p~~i~~~l~G~~~GT~I 303 (316)
+++|+.+.++++|+.+||+|
T Consensus 233 g~~~~~l~~~l~g~~~GT~I 252 (252)
T cd04249 233 WQYPEQLTALLAGEPVGTKI 252 (252)
T ss_pred CCCccHHHHHHcCCCCCcCC
Confidence 99999999999999999976
No 60
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=99.94 E-value=2e-25 Score=212.45 Aligned_cols=162 Identities=21% Similarity=0.293 Sum_probs=134.2
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeccccccc-------cchH---HHHHHHH-HHh-CCCEEEEeCCCC
Q 021163 136 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-------AEPY---IRRRAVR-HLE-KGRVVIFAAGTG 203 (316)
Q Consensus 136 ~~~~~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~-------~~~~---i~~~l~~-lL~-~g~IPVv~g~~g 203 (316)
+++..|.+.++++++++.|++.+|++.|+++.++++.+.... ...+ +.+.+.. +.+ .+.|||++||.|
T Consensus 121 ~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig 200 (306)
T cd04247 121 SPRTKDLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVDLDFSIEALDQTFYDELAQVLGEKITACENRVPVVTGFFG 200 (306)
T ss_pred chHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHheecCCCccccccchhHHHHHHHHHHhhccCCceEEeeccEe
Confidence 444567888899999999999999999999998887554111 1111 2222222 222 468999999843
Q ss_pred ---------CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHH
Q 021163 204 ---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITL 271 (316)
Q Consensus 204 ---------~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~ 271 (316)
.++++||++|+++|..|+|+++++||||||||++||+.+|+|++|++|+|+|+.++ |++++||+++++
T Consensus 201 ~~~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~p 280 (306)
T cd04247 201 NVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQ 280 (306)
T ss_pred cCCCCCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHH
Confidence 25789999999999999999999999999999999999999999999999999886 899999999999
Q ss_pred HHhCCCcEEEEeCCCcchHHHHhcCCCcceEEecC
Q 021163 272 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 306 (316)
Q Consensus 272 a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~~ 306 (316)
|++++||++|.|.++|+ ..||+|.++
T Consensus 281 a~~~~Ipi~i~nt~~P~---------~~GT~I~~~ 306 (306)
T cd04247 281 VIKARIPIRIKNVENPR---------GEGTVIYPD 306 (306)
T ss_pred HHHcCCcEEEecCCCCC---------CCCcEEcCC
Confidence 99999999999999986 479999763
No 61
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=99.93 E-value=9e-26 Score=238.49 Aligned_cols=159 Identities=21% Similarity=0.195 Sum_probs=133.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeccccccc---cchH-----HHHHHHHHHhC--CCEEEEeCCCC----
Q 021163 138 SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV---AEPY-----IRRRAVRHLEK--GRVVIFAAGTG---- 203 (316)
Q Consensus 138 ~~~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~---~~~~-----i~~~l~~lL~~--g~IPVv~g~~g---- 203 (316)
+..|.+.+++|++++.|++.+|++.|+++.++++++.... .... ..+++.++++. +.+||++||.|
T Consensus 120 ~~~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~~~~~~~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~ 199 (810)
T PRK09466 120 AQYAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLRAERAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEA 199 (810)
T ss_pred hhhhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHheecCCCCCcccchhhhHHHHHHHHhccCCeEEEeeCccccCCC
Confidence 3456777789999999999999999999998887553111 1111 12345555554 47999999844
Q ss_pred -----CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHhC
Q 021163 204 -----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQEN 275 (316)
Q Consensus 204 -----~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~~ 275 (316)
.++++||++|+.||++|+|+++.|||||||||++|||.+|+|++|++|+|+|+.++ |++++||+|+++|+++
T Consensus 200 G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~~~ 279 (810)
T PRK09466 200 GETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGS 279 (810)
T ss_pred CCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHHHc
Confidence 25789999999999999999999999999999999999999999999999999885 9999999999999999
Q ss_pred CCcEEEEeCCCcchHHHHhcCCCcceEEec
Q 021163 276 NIPVVVFNLNQPGNIAKAIQGERVGTLIGG 305 (316)
Q Consensus 276 gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~ 305 (316)
+||++|.|.++|+ ..||+|..
T Consensus 280 ~Ipi~V~ntf~p~---------~~GT~I~~ 300 (810)
T PRK09466 280 DIDLQLRCSYQPE---------QGSTRIER 300 (810)
T ss_pred CCeEEEecCCCCC---------CCceEEec
Confidence 9999999999885 46999965
No 62
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.93 E-value=4.3e-25 Score=211.13 Aligned_cols=209 Identities=22% Similarity=0.305 Sum_probs=145.1
Q ss_pred CCCeEEEEECccccccCCCC-CCC------------------CCeEEEEChhHHHHHHHHccc-----CC--CCccHHH-
Q 021163 89 KWQRVLLKVSGEALAGDHTQ-NID------------------PKVAIVVGGGNIFRGASAAGN-----SG--LDRSSAD- 141 (316)
Q Consensus 89 ~~k~iVIKiGGS~i~~~~~~-~~~------------------~~vVIVhGGG~~a~G~~~l~~-----~g--l~~~~~d- 141 (316)
.++++|||+||++|++++.. .++ .++|||||||.++ |+..++. ++ ++....+
T Consensus 1 ~~~~iVIklGG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~-G~~~~~~~~~~~~~~~~~~~~~~~ 79 (314)
T PRK12353 1 MMKKIVVALGGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQV-GNILLAQEAAASEKNKVPAMPLDV 79 (314)
T ss_pred CCcEEEEEECHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHh-CHHHhcCccccccCCCCCCchhHH
Confidence 36899999999999998632 121 3689999998875 4443321 11 1111122
Q ss_pred ----HHHHHHHHHHHHHHHHHHHhCCCCe-----EEEecccccccc--c-------------------------------
Q 021163 142 ----YIGMLATVMNAIFLQATMESIGIPT-----RVQTAFRMSEVA--E------------------------------- 179 (316)
Q Consensus 142 ----~v~~la~~lna~Lv~~~L~~~Gi~a-----~~l~~~~~~~~~--~------------------------------- 179 (316)
..++++..++. .+...|..+|+.. +.+.+.+..+.. .
T Consensus 80 ~~a~~qg~l~~~l~~-~~~~~l~~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~~~~~~ 158 (314)
T PRK12353 80 CGAMSQGYIGYHLQN-ALRNELLKRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFKEDAGR 158 (314)
T ss_pred HHHHHhHHHHHHHHH-HHHHHHHhcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceeeecCCc
Confidence 13335555553 3556788888732 123322322200 0
Q ss_pred hH------------HH-HHHHHHHhCCCEEEEeCCCCCC-------------CCCchHHHHHHHHhcCCcEEEEecccCc
Q 021163 180 PY------------IR-RRAVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDG 233 (316)
Q Consensus 180 ~~------------i~-~~l~~lL~~g~IPVv~g~~g~~-------------~~~sD~iAa~LA~~L~Ad~LiilTDVdG 233 (316)
.+ ++ ..+..+|++|.|||++|+.+.| ++++|.+|+++|.+|+||+|+++|||||
T Consensus 159 ~~r~~v~sp~p~~~v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdG 238 (314)
T PRK12353 159 GYRRVVPSPKPVDIVEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDK 238 (314)
T ss_pred eeEeccCCCCccccccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 01 22 3356789999999999753321 3678999999999999999999999999
Q ss_pred ccccCCCCCCCCceeccccHHHHhhC--------CCCCchHHHHHHHH--hCCCcEEEEeCCCcchHHHHhcCCCcceEE
Q 021163 234 VYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLI 303 (316)
Q Consensus 234 Vyt~dP~~~p~aklI~~It~~e~~~l--------G~~v~k~~Aa~~a~--~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I 303 (316)
||++|| +|++++|++++++|+.++ |.|..|++|+..+. +.|++++|++ ++++.++++|+ .||+|
T Consensus 239 Vy~~~~--~~~a~~i~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~---~~~i~~~l~g~-~GT~i 312 (314)
T PRK12353 239 VYINFG--KPNQKKLDEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITS---LEKAKEALEGK-AGTVI 312 (314)
T ss_pred ccCCCC--CCCCeECcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECC---chHHHHHhCCC-CCeEe
Confidence 999766 478999999999877643 44677999998877 6689999997 68888999998 89999
Q ss_pred ec
Q 021163 304 GG 305 (316)
Q Consensus 304 ~~ 305 (316)
.+
T Consensus 313 ~~ 314 (314)
T PRK12353 313 VK 314 (314)
T ss_pred cC
Confidence 64
No 63
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.93 E-value=1.8e-25 Score=204.05 Aligned_cols=190 Identities=24% Similarity=0.321 Sum_probs=134.7
Q ss_pred CeEEEEECccccccCC--CCC----------CCCCeEEEEChhHHHHHHHHcccCCCCccH-----------HHH-HHHH
Q 021163 91 QRVLLKVSGEALAGDH--TQN----------IDPKVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADY-IGML 146 (316)
Q Consensus 91 k~iVIKiGGS~i~~~~--~~~----------~~~~vVIVhGGG~~a~G~~~l~~~gl~~~~-----------~d~-v~~l 146 (316)
|++|||+||+++++++ ... ...++|||||+|.+++..... +++.+.. ... ...+
T Consensus 1 k~~ViK~GGs~l~~~~~~~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~--~~~~~~~~~~~r~~~~~~~~~~~~~~ 78 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDKDEELRELADDIALLSQLGIKVVVVHGGGSFTDELLEK--YGIEPKFVDGSRVTDIETGLIITMAA 78 (242)
T ss_dssp SEEEEEE-HHGHSSHSHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH--CTHTTSEETHHCHBHHHHHHHHHHHH
T ss_pred CeEEEEECchhhCCchHHHHHHHHHHHHHHhCCCeEEEEECChhhcCchHHh--ccCCcccchhhhhhhhhhhHHHHHHH
Confidence 6899999999999872 111 235789999999997655322 3333210 111 1223
Q ss_pred HHHHHH-----HHHHHHHHhCCCCeEEEeccccccccc-----hHHHHHHHHHHhCCCEEEEeCCC-----C-C---CCC
Q 021163 147 ATVMNA-----IFLQATMESIGIPTRVQTAFRMSEVAE-----PYIRRRAVRHLEKGRVVIFAAGT-----G-N---PFF 207 (316)
Q Consensus 147 a~~lna-----~Lv~~~L~~~Gi~a~~l~~~~~~~~~~-----~~i~~~l~~lL~~g~IPVv~g~~-----g-~---~~~ 207 (316)
.+.+|. .++ ..+..+++.+....+.+.+.... ....+.+.++|++|.|||++|+. | . +++
T Consensus 79 ~~~l~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ipVv~g~~~~~~~g~~~~~~~~ 157 (242)
T PF00696_consen 79 AAELNRDALLDEIV-SAGERLGAHAVGLSLSDGGISAAKRDAREVDKEAIRELLEQGIIPVVSGFAGIDDDGEVTTLGNV 157 (242)
T ss_dssp HHHHHHHHHHHHHH-HHHHHCTHHEEEHHHTGGTEEEEEEESSEEHHHHHHHHHHTTSEEEEESEEEEETTSTEEEEEEE
T ss_pred hhccccchhHHHHH-HhhhhhhHHHHhhhhhcccchhhhhhhhhhHHHHHHHHHHCCCEEEEeCCcccCCCCCcccCCCC
Confidence 445555 555 46888888887544443221111 12235577899999999999852 2 2 578
Q ss_pred CchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC--------CCCCc-hHHHHHHHHhCCCc
Q 021163 208 TTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVM-DMTAITLCQENNIP 278 (316)
Q Consensus 208 ~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l--------G~~v~-k~~Aa~~a~~~gI~ 278 (316)
++|++|++||.+|+|++|+|||||||||++||+.+|++++|++|+++|+.++ |.+.. ++.|.+.+.+.+++
T Consensus 158 ~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~~~~~ 237 (242)
T PF00696_consen 158 SSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAAEEGGIP 237 (242)
T ss_dssp THHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999999999999999998873 33333 45556666677899
Q ss_pred EEEEe
Q 021163 279 VVVFN 283 (316)
Q Consensus 279 v~I~n 283 (316)
++|+|
T Consensus 238 v~I~n 242 (242)
T PF00696_consen 238 VHIIN 242 (242)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99986
No 64
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.92 E-value=4.4e-24 Score=203.00 Aligned_cols=206 Identities=27% Similarity=0.362 Sum_probs=149.0
Q ss_pred eEEEEECccccccCCC---CCC------------------CCCeEEEEChh----HHHHHHHHcc----cCCCCccHHHH
Q 021163 92 RVLLKVSGEALAGDHT---QNI------------------DPKVAIVVGGG----NIFRGASAAG----NSGLDRSSADY 142 (316)
Q Consensus 92 ~iVIKiGGS~i~~~~~---~~~------------------~~~vVIVhGGG----~~a~G~~~l~----~~gl~~~~~d~ 142 (316)
++|||+||.+|..+.. ... ..+++|+||+| .++++....+ .+.++....+.
T Consensus 1 rivialgGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~~ 80 (308)
T cd04235 1 RIVVALGGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAMS 80 (308)
T ss_pred CEEEEecHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcchh
Confidence 5899999999987543 111 13689999999 5555544332 24566656677
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCeEEEecccc-----cc--cc-------chH---------------------------
Q 021163 143 IGMLATVMNAIFLQATMESIGIPTRVQTAFRM-----SE--VA-------EPY--------------------------- 181 (316)
Q Consensus 143 v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~-----~~--~~-------~~~--------------------------- 181 (316)
.++++..++- -+...|.+.|++....+.++. .| |. ..|
T Consensus 81 ~G~ig~~~~~-al~~~l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~~d~~~g~rrv 159 (308)
T cd04235 81 QGMIGYMLQQ-ALDNELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRV 159 (308)
T ss_pred hHHHHHHHHH-HHHHHHHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEeCCCCceee
Confidence 8999988844 455688988887643333221 00 00 000
Q ss_pred ---------HHHH-HHHHHhCCCEEEEeCCCCCC-------------CCCchHHHHHHHHhcCCcEEEEecccCcccccC
Q 021163 182 ---------IRRR-AVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVYDDN 238 (316)
Q Consensus 182 ---------i~~~-l~~lL~~g~IPVv~g~~g~~-------------~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~d 238 (316)
++.+ +..+|++|+|||++|+.|+| ++++|++|+++|.+++||+|+++|||||||+++
T Consensus 160 V~SP~P~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~ 239 (308)
T cd04235 160 VPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINF 239 (308)
T ss_pred eCCCCCccccCHHHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCC
Confidence 1223 45689999999999865543 346699999999999999999999999999965
Q ss_pred CCCCCCCceeccccHHHHhhC--------CCCCchHHHHHHHHhC-CCcEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163 239 PRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIG 304 (316)
Q Consensus 239 P~~~p~aklI~~It~~e~~~l--------G~~v~k~~Aa~~a~~~-gI~v~I~ng~~p~~i~~~l~G~~~GT~I~ 304 (316)
+ .|++++|++|+++|+.++ |.|..|++|+..+.+. +.+++|++ ++++.++++|+ .||+|.
T Consensus 240 ~--~pda~~i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~---~~~i~~aL~G~-~GT~I~ 308 (308)
T cd04235 240 G--KPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITS---LENAEAALEGK-AGTVIV 308 (308)
T ss_pred C--CCCCeEcCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECC---HHHHHHHHCCC-CCeEEC
Confidence 4 478999999999987653 4567799999777766 46788876 67889999998 799983
No 65
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=99.92 E-value=4.5e-24 Score=226.50 Aligned_cols=158 Identities=27% Similarity=0.323 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecccccc----ccc-----hHHHHHHHHH-HhCCCEEEEeCCCC------
Q 021163 140 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE----VAE-----PYIRRRAVRH-LEKGRVVIFAAGTG------ 203 (316)
Q Consensus 140 ~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~----~~~-----~~i~~~l~~l-L~~g~IPVv~g~~g------ 203 (316)
.|.+.++||++++.+++.+|++.|+++.++++.+... +.+ ....+.+.++ .+.+.|||++||.+
T Consensus 119 ~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~~~~~i~~~~~~~~~v~Vv~Gfig~~~~G~ 198 (819)
T PRK09436 119 NAAIISRGERLSIAIMAAVLEARGHDVTVIDPRELLLADGHYLESTVDIAESTRRIAASFIPADHVILMPGFTAGNEKGE 198 (819)
T ss_pred hhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHeEEecCCCCCceechHhhHHHHHHHHhcCCcEEEecCcccCCCCCC
Confidence 4666678999999999999999999999887654311 111 1122344444 35688999999843
Q ss_pred ---CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHHHHHHhCCC
Q 021163 204 ---NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNI 277 (316)
Q Consensus 204 ---~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~~gI 277 (316)
.+++++|++|+++|.+++|+.+++||||||||++||+.+|+|++|++++|+|+.++ |++++|++|+++|+++||
T Consensus 199 ~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~~~~I 278 (819)
T PRK09436 199 LVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQI 278 (819)
T ss_pred EEEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHHHCCc
Confidence 24688999999999999999999999999999999999999999999999999875 899999999999999999
Q ss_pred cEEEEeCCCcchHHHHhcCCCcceEEecC
Q 021163 278 PVVVFNLNQPGNIAKAIQGERVGTLIGGT 306 (316)
Q Consensus 278 ~v~I~ng~~p~~i~~~l~G~~~GT~I~~~ 306 (316)
|++|.|+++|+ ..||+|..+
T Consensus 279 pi~i~n~~~p~---------~~GT~I~~~ 298 (819)
T PRK09436 279 PCLIKNTFNPQ---------APGTLIGAE 298 (819)
T ss_pred eEEEccCCCCC---------CCceEEEec
Confidence 99999999886 469999764
No 66
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.91 E-value=2.2e-23 Score=198.74 Aligned_cols=206 Identities=23% Similarity=0.344 Sum_probs=138.8
Q ss_pred CeEEEEECccccccCCCC---CC------------------CCCeEEEEChhHHHHHHHHccc----CCCCccHHHHH--
Q 021163 91 QRVLLKVSGEALAGDHTQ---NI------------------DPKVAIVVGGGNIFRGASAAGN----SGLDRSSADYI-- 143 (316)
Q Consensus 91 k~iVIKiGGS~i~~~~~~---~~------------------~~~vVIVhGGG~~a~G~~~l~~----~gl~~~~~d~v-- 143 (316)
|+||||+||++|..+... .+ ..++|||||+|..+ |...++. ..++...++..
T Consensus 1 ~riViklGgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqv-G~~~l~~~~~~~~~~~~p~~~~~A 79 (310)
T TIGR00746 1 KRVVVALGGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQV-GNLLLQNQAADSEVPAMPLDVLGA 79 (310)
T ss_pred CeEEEEECHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHH-HHHHhccccccccCCCCcchHHHH
Confidence 689999999999865311 11 13689999999998 4443431 11222223332
Q ss_pred ---HHHHHHHHHHHHHHHHHhCCCCe-----EEEecccccc--ccc---h------------------------------
Q 021163 144 ---GMLATVMNAIFLQATMESIGIPT-----RVQTAFRMSE--VAE---P------------------------------ 180 (316)
Q Consensus 144 ---~~la~~lna~Lv~~~L~~~Gi~a-----~~l~~~~~~~--~~~---~------------------------------ 180 (316)
++++..++ ..+...|.++|++. +.|...+..| |.+ +
T Consensus 80 ~~qg~lg~~~~-~~l~~~l~~~g~~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~~~~~r 158 (310)
T TIGR00746 80 MSQGMIGYMLQ-QALNNELPKRGMEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDAGRGWR 158 (310)
T ss_pred hhHHHHHHHHH-HHHHHHHHhcCCCccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecCCCcce
Confidence 33444442 22334555888654 2344454333 211 0
Q ss_pred ----------HHH-HHHHHHHhCCCEEEEeCCCCCC-------------CCCchHHHHHHHHhcCCcEEEEecccCcccc
Q 021163 181 ----------YIR-RRAVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVYD 236 (316)
Q Consensus 181 ----------~i~-~~l~~lL~~g~IPVv~g~~g~~-------------~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt 236 (316)
.++ +.+..+|++|.++|.+++.|.| ++++|.+|+++|.+|+||+|+++|||||||+
T Consensus 159 rvv~sp~p~~iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~ 238 (310)
T TIGR00746 159 RVVPSPRPKDIVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYI 238 (310)
T ss_pred EeecCCCchhhccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeC
Confidence 012 2345799999854444332221 4689999999999999999999999999998
Q ss_pred cCCCCCCCCceeccccHHHHhhC--------CCCCchHHHHHHHHhC-CCcEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163 237 DNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIG 304 (316)
Q Consensus 237 ~dP~~~p~aklI~~It~~e~~~l--------G~~v~k~~Aa~~a~~~-gI~v~I~ng~~p~~i~~~l~G~~~GT~I~ 304 (316)
++ .+|++++|++++++|+.++ |.|..|++|+..+.+. +++++|++ ++++.++++|+ .||+|.
T Consensus 239 ~~--~~p~a~~i~~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~---~~~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 239 NY--GKPDEKALREVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITS---LENAVEALEGK-AGTRVT 309 (310)
T ss_pred CC--CCCCCcCCcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEec---hHHHHHHHCCC-CCcEEe
Confidence 63 3578999999999887653 4566799999666655 57899987 68999999999 999985
No 67
>PRK09181 aspartate kinase; Validated
Probab=99.91 E-value=9.8e-24 Score=211.71 Aligned_cols=157 Identities=11% Similarity=0.110 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeccccccccchHHHHHHHHHHh----CCCEEEEeCCCC--------CCCC
Q 021163 140 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE----KGRVVIFAAGTG--------NPFF 207 (316)
Q Consensus 140 ~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~l~~lL~----~g~IPVv~g~~g--------~~~~ 207 (316)
.|.+.+.||++++.|++.+|++.|+++.++++.....-....+.+++.+.++ .+.|||++||.+ .+++
T Consensus 139 ~D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itTLGRG 218 (475)
T PRK09181 139 REMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDDDDPLTLDERIKKAFKDIDVTKELPIVTGYAKCKEGLMRTFDRG 218 (475)
T ss_pred hHHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccCCcccchHHHHHHHHhhhccCCcEEEecCCcCCCCCCEEecCCC
Confidence 3666778999999999999999999999755422211111113344544444 478999999843 2578
Q ss_pred CchHHHHHHHHhcCCcEEEEecccCcccccCCCCC--CCCceeccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEE
Q 021163 208 TTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN--PNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVF 282 (316)
Q Consensus 208 ~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~--p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~~gI~v~I~ 282 (316)
+||++|+.||++|+|+++.+||||+ ||++|||.+ |+|++|++|+|+|+.|+ |++++||+|+++|++++||++|.
T Consensus 219 GSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi~V~ 297 (475)
T PRK09181 219 YSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIK 297 (475)
T ss_pred hHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEe
Confidence 9999999999999999999999997 999999999 68999999999999986 99999999999999999999999
Q ss_pred eCCCcchHHHHhcCCCcceEEecC
Q 021163 283 NLNQPGNIAKAIQGERVGTLIGGT 306 (316)
Q Consensus 283 ng~~p~~i~~~l~G~~~GT~I~~~ 306 (316)
|.++|+ ..||+|...
T Consensus 298 nt~~p~---------~~GT~I~~~ 312 (475)
T PRK09181 298 NTFEPE---------HPGTLITKD 312 (475)
T ss_pred cCCCCC---------CCCeEEecC
Confidence 999886 479999754
No 68
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=99.91 E-value=3.6e-24 Score=228.57 Aligned_cols=158 Identities=24% Similarity=0.306 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecccccccc--------chH--------HHHHH-HHHHhCC-CEEEEeCC
Q 021163 140 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA--------EPY--------IRRRA-VRHLEKG-RVVIFAAG 201 (316)
Q Consensus 140 ~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~~--------~~~--------i~~~l-~~lL~~g-~IPVv~g~ 201 (316)
.|.+.++++++++.|++.+|++.|+++..+++.+..... .++ .+..+ ..+++.+ .|||++||
T Consensus 119 ~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf 198 (861)
T PRK08961 119 QAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREWLTALPQPNQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLITQGF 198 (861)
T ss_pred hheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHhEeecCccccccccccccceecHhhHHHHHHHHhccCCeEEEeCCc
Confidence 455556889999999999999999999988875531111 112 12223 3344544 59999998
Q ss_pred CC---------CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchHHHH
Q 021163 202 TG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAI 269 (316)
Q Consensus 202 ~g---------~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~~Aa 269 (316)
.| .++++||++|+++|.+|+|+++++||||||||++||+.+|++++|++|+|+|+.++ |++++|++|+
T Consensus 199 ~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~~~a~ 278 (861)
T PRK08961 199 IARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSI 278 (861)
T ss_pred ceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEecccCHHHHHHHHHCCCeEECHHHH
Confidence 44 25789999999999999999999999999999999999999999999999998875 8899999999
Q ss_pred HHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEecC
Q 021163 270 TLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 306 (316)
Q Consensus 270 ~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~~ 306 (316)
++|+++|||++|.|+++|+ ..||+|..+
T Consensus 279 ~~a~~~~i~i~v~~~~~~~---------~~gT~I~~~ 306 (861)
T PRK08961 279 KPCRDAGIPMAILDTERPD---------LSGTSIDGD 306 (861)
T ss_pred HHHHHCCCCEEEEeCCCCC---------CCccEEeCC
Confidence 9999999999999999884 469999764
No 69
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.91 E-value=7.9e-24 Score=210.10 Aligned_cols=212 Identities=17% Similarity=0.207 Sum_probs=154.5
Q ss_pred CCCeEEEEECccccccCCCCC----------CCCCeEEEEChhHHHHHHH-Hccc-----CCCCcc---HHHHHHHHHHH
Q 021163 89 KWQRVLLKVSGEALAGDHTQN----------IDPKVAIVVGGGNIFRGAS-AAGN-----SGLDRS---SADYIGMLATV 149 (316)
Q Consensus 89 ~~k~iVIKiGGS~i~~~~~~~----------~~~~vVIVhGGG~~a~G~~-~l~~-----~gl~~~---~~d~v~~la~~ 149 (316)
+.+++|||+||+++.+++... ...++|||||||+.++.+. .++. +|++.+ .++.+.+.++.
T Consensus 16 ~~~~~ViK~GG~~~~~~~~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~~~~~~~g~ 95 (429)
T TIGR01890 16 RGKTFVVGLGGELVEGGNLGNIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHRGLRVTDEASLEQAQQAAGT 95 (429)
T ss_pred CCCEEEEEEChhhccCccHHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHHHHHHHhCh
Confidence 568999999999998764222 1247899999999998764 3331 344333 34566667778
Q ss_pred HHHHHHHHHHHhCCCCeEE-----Eeccccc-------------c---ccc-hHHHH-HHHHHHhCCCEEEEeCC----C
Q 021163 150 MNAIFLQATMESIGIPTRV-----QTAFRMS-------------E---VAE-PYIRR-RAVRHLEKGRVVIFAAG----T 202 (316)
Q Consensus 150 lna~Lv~~~L~~~Gi~a~~-----l~~~~~~-------------~---~~~-~~i~~-~l~~lL~~g~IPVv~g~----~ 202 (316)
+|..|++ .|++. +++.+ +++.+.. + ..+ ..++. .+..+|+.|+|||+++. +
T Consensus 96 vn~~l~~-~l~~~-~~~~~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~~l~~ll~~g~ipvi~pi~~~~~ 173 (429)
T TIGR01890 96 LRLAIEA-RLSMS-LSNTPMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTEGIRRQLDAGSIVLLSPLGHSPT 173 (429)
T ss_pred HHHHHHH-HHHhc-CCcccccccCceEccceEEEEEECCCCcCccccccceEEEEcHHHHHHHHHCCCeEEECCcccCCC
Confidence 9988885 66655 43322 2221110 1 111 11343 35679999999999983 2
Q ss_pred C-CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC-----CC-CCchHHHHHHHHhC
Q 021163 203 G-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DL-SVMDMTAITLCQEN 275 (316)
Q Consensus 203 g-~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l-----G~-~v~k~~Aa~~a~~~ 275 (316)
| ..++++|.+|+.||.+|+|++|+|+|||||||++ ++++|++|+.+|++++ +. ++.|++++..|.+.
T Consensus 174 g~~~nvnaD~~A~~lA~al~a~kli~ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~~~~kl~~a~~a~~~ 247 (429)
T TIGR01890 174 GETFNLDMEDVATSVAISLKADKLIYFTLSPGISDP------DGTLAAELSPQEVESLAERLGSETTRRLLSAAVKACRG 247 (429)
T ss_pred CCEEEeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCCcccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHc
Confidence 2 2467899999999999999999999999999963 3689999998877654 33 47899999999999
Q ss_pred CC-cEEEEeCCCcchHHH-HhcCCCcceEEecCCC
Q 021163 276 NI-PVVVFNLNQPGNIAK-AIQGERVGTLIGGTWN 308 (316)
Q Consensus 276 gI-~v~I~ng~~p~~i~~-~l~G~~~GT~I~~~~~ 308 (316)
|+ +++|+|++.|+.+.. ++..++.||.|..+..
T Consensus 248 gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d~y 282 (429)
T TIGR01890 248 GVHRSHIVSYAEDGSLLQELFTRDGIGTSISKEAF 282 (429)
T ss_pred CCCeEEEECCCCCcHHHHHHhcCCCCcceEeccch
Confidence 97 599999999999875 5577779999987654
No 70
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=99.91 E-value=1.6e-23 Score=198.24 Aligned_cols=160 Identities=13% Similarity=0.110 Sum_probs=129.4
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeccccc---ccc-chHHHHHHHHHHhCCCEEEEeCCCC-------
Q 021163 135 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS---EVA-EPYIRRRAVRHLEKGRVVIFAAGTG------- 203 (316)
Q Consensus 135 l~~~~~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~---~~~-~~~i~~~l~~lL~~g~IPVv~g~~g------- 203 (316)
+.....|.+..++|++++.+++.+|++.|+++..+++.... ... +..+.+.+..+...+.|||++||.+
T Consensus 128 ~~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~~~~~t~~~~i~~~~~~~~~~~~v~IvtGF~~~~~G~it 207 (304)
T cd04248 128 HLLAARELLASLGEAHSAFNTALLLQNRGVNARFVDLSGWRDSGDMTLDERISEAFRDIDPRDELPIVTGYAKCAEGLMR 207 (304)
T ss_pred CCHHHHHHHhhhCHHHHHHHHHHHHHHCCCCeEEECcccccccCCCCcHHHHHHHHHhhccCCcEEEeCCccCCCCCCEE
Confidence 34455678888999999999999999999999875543322 111 1112122222223578999999832
Q ss_pred -CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCC--CCCceeccccHHHHhhC---CCCCchHHHHHHHHhCCC
Q 021163 204 -NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN--PNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNI 277 (316)
Q Consensus 204 -~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~--p~aklI~~It~~e~~~l---G~~v~k~~Aa~~a~~~gI 277 (316)
..+++||++|+.||++|+|++++|||||+ ||++|||.+ ++++.|++++|+|+.++ |++++||+|+++|++++|
T Consensus 208 TLGRGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~I 286 (304)
T cd04248 208 EFDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGI 286 (304)
T ss_pred EcCCCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCC
Confidence 25789999999999999999999999996 999999999 58999999999999885 999999999999999999
Q ss_pred cEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163 278 PVVVFNLNQPGNIAKAIQGERVGTLIG 304 (316)
Q Consensus 278 ~v~I~ng~~p~~i~~~l~G~~~GT~I~ 304 (316)
|++|.|.++|+ ..||+|.
T Consensus 287 Pi~Vkntf~P~---------~~GTlIt 304 (304)
T cd04248 287 PLRVKNTFEPD---------HPGTLIT 304 (304)
T ss_pred eEEEecCCCCC---------CCCceeC
Confidence 99999999986 4799984
No 71
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.91 E-value=7.4e-24 Score=193.79 Aligned_cols=182 Identities=21% Similarity=0.264 Sum_probs=131.8
Q ss_pred eEEEEECccccccCCCCC----------CCCCeEEEEChhHHHHHHH-Hcc-----cCCCCcc---HHHHHHH-HHHHHH
Q 021163 92 RVLLKVSGEALAGDHTQN----------IDPKVAIVVGGGNIFRGAS-AAG-----NSGLDRS---SADYIGM-LATVMN 151 (316)
Q Consensus 92 ~iVIKiGGS~i~~~~~~~----------~~~~vVIVhGGG~~a~G~~-~l~-----~~gl~~~---~~d~v~~-la~~ln 151 (316)
++|||+||++++++ ... ...++|||||||++.+... .++ .++++.. ..+.+.+ +++.+|
T Consensus 1 ~~ViK~GGs~l~~~-~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~~~~~g~~~ 79 (231)
T TIGR00761 1 TIVIKIGGAAISDL-LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVEMVLIGQVN 79 (231)
T ss_pred CEEEEEChHHHhcc-HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHHHHHhcchH
Confidence 58999999999876 111 2347899999999965432 222 0122211 2233333 456899
Q ss_pred HHHHHHHHHhCCCCeEEEeccccccc-------------cc-hHHH-HHHHHHHhCCCEEEEeCC--C--C-CCCCCchH
Q 021163 152 AIFLQATMESIGIPTRVQTAFRMSEV-------------AE-PYIR-RRAVRHLEKGRVVIFAAG--T--G-NPFFTTDT 211 (316)
Q Consensus 152 a~Lv~~~L~~~Gi~a~~l~~~~~~~~-------------~~-~~i~-~~l~~lL~~g~IPVv~g~--~--g-~~~~~sD~ 211 (316)
..+++ +|.++|++++++++.+...+ .+ ..++ +.+..++++|.|||++|. + + ..+.++|+
T Consensus 80 ~~i~~-~L~~~G~~a~~l~~~~~~~it~~~~~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~~~~~~g~~~~l~sD~ 158 (231)
T TIGR00761 80 KELVA-LLNKHGINAIGLTGGDGQLFTARSLDKEDLGYVGEIKKVNKALLEALLKAGYIPVISSLALTAEGQALNVNADT 158 (231)
T ss_pred HHHHH-HHHhCCCCcccccCCCCCEEEEEECCCccCCcccceEEEcHHHHHHHHHCCCeEEECCCccCCCCcEEEeCHHH
Confidence 88886 99999999998766543111 00 1122 446789999999999984 1 1 23578999
Q ss_pred HHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC-------CCCCchHHHHHHHHhCCCcEE
Q 021163 212 AAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIPVV 280 (316)
Q Consensus 212 iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l-------G~~v~k~~Aa~~a~~~gI~v~ 280 (316)
+|++||.+|+|++++|||||||||++|| +++|++|+++|+.++ |.|..|++++..|.++|++.+
T Consensus 159 ~A~~lA~~l~A~~li~ltdv~Gv~~~d~-----~~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~gv~~v 229 (231)
T TIGR00761 159 AAGALAAALGAEKLVLLTDVPGILNGDG-----QSLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVKSV 229 (231)
T ss_pred HHHHHHHHcCCCEEEEEECCCCeecCCC-----CeeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999999999999876 369999999887654 456679999999999999743
No 72
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.90 E-value=3.5e-23 Score=195.09 Aligned_cols=207 Identities=19% Similarity=0.288 Sum_probs=148.2
Q ss_pred CCCeEEEEECccccccCCCCC----------CCCCeEEEEChhHHHHHHH-Hccc-----CCCCcc---HHHHHHHHHHH
Q 021163 89 KWQRVLLKVSGEALAGDHTQN----------IDPKVAIVVGGGNIFRGAS-AAGN-----SGLDRS---SADYIGMLATV 149 (316)
Q Consensus 89 ~~k~iVIKiGGS~i~~~~~~~----------~~~~vVIVhGGG~~a~G~~-~l~~-----~gl~~~---~~d~v~~la~~ 149 (316)
+.+++|||+||+++.++.... ...++|||||||+.+..+. .++. .|++.+ .++.+.+..+.
T Consensus 17 ~~~~~VIKlGG~ai~~~~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~~G~RvT~~~~l~~~~~~~g~ 96 (280)
T cd04237 17 RGKTFVIAFGGEAVAHPNFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLRITDAAALECVKEAAGA 96 (280)
T ss_pred CCCEEEEEEChHHhcCchHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCccccCCcCcCCHHHHHHHHHHHHH
Confidence 467999999999998754211 1348899999999997664 3321 233322 34555554467
Q ss_pred HHHHHHHHHHHhCCCCeEEEe-----ccc-----cc--------c---ccc-hHHH-HHHHHHHhCCCEEEEeCC----C
Q 021163 150 MNAIFLQATMESIGIPTRVQT-----AFR-----MS--------E---VAE-PYIR-RRAVRHLEKGRVVIFAAG----T 202 (316)
Q Consensus 150 lna~Lv~~~L~~~Gi~a~~l~-----~~~-----~~--------~---~~~-~~i~-~~l~~lL~~g~IPVv~g~----~ 202 (316)
+|..|.+ .|+. |++++++. ..+ .. + ..+ ..++ +.+..+|++|++||+.+. .
T Consensus 97 v~~~l~~-~l~~-~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~~~i~~lL~~g~ipv~~~~g~~~~ 174 (280)
T cd04237 97 VRLEIEA-LLSM-GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVLLSPLGYSPT 174 (280)
T ss_pred HHHHHHH-HHHh-hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcHHHHHHHHHCCCEEEECCceECCC
Confidence 7877654 6654 77765322 111 00 0 000 0123 335779999999999984 2
Q ss_pred CCC-CCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC--------CCCCchHHHHHHHH
Q 021163 203 GNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQ 273 (316)
Q Consensus 203 g~~-~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l--------G~~v~k~~Aa~~a~ 273 (316)
|.. +.++|.+|+.||.+|+|++|+|+|||||||++ ++++|++++.+|++++ |.|..|++++..+.
T Consensus 175 g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ggM~~Kv~~a~~a~ 248 (280)
T cd04237 175 GEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDTARLLQAAIEAC 248 (280)
T ss_pred CCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 333 45899999999999999999999999999974 3689999998877653 45677999999999
Q ss_pred hCCC-cEEEEeCCCcchHH-HHhcCCCcceEE
Q 021163 274 ENNI-PVVVFNLNQPGNIA-KAIQGERVGTLI 303 (316)
Q Consensus 274 ~~gI-~v~I~ng~~p~~i~-~~l~G~~~GT~I 303 (316)
+.|+ +++|++++.|+.+. +++..++.||.|
T Consensus 249 ~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 249 RGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred HcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 9999 69999999999886 567777789975
No 73
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.89 E-value=1.6e-22 Score=201.24 Aligned_cols=212 Identities=17% Similarity=0.256 Sum_probs=151.9
Q ss_pred CCCeEEEEECccccccCCCCC----------CCCCeEEEEChhHHHHHHH-Hccc-----CCCCcc---HHHHHHHHHHH
Q 021163 89 KWQRVLLKVSGEALAGDHTQN----------IDPKVAIVVGGGNIFRGAS-AAGN-----SGLDRS---SADYIGMLATV 149 (316)
Q Consensus 89 ~~k~iVIKiGGS~i~~~~~~~----------~~~~vVIVhGGG~~a~G~~-~l~~-----~gl~~~---~~d~v~~la~~ 149 (316)
+.+++|||+||+++.+++... ...++|||||||+.+..+. .++. .|++.+ .++.+.+....
T Consensus 24 ~~~~~VIk~GG~~l~~~~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~~~~~~~g~ 103 (441)
T PRK05279 24 RGKTFVIMLGGEAIAHGNFSNIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEPRYHKGLRVTDAAALECVKQAAGE 103 (441)
T ss_pred CCCEEEEEECchhccChhHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCceecCCcccCCHHHHHHHHHHHHH
Confidence 567999999999998764211 1247899999999987763 3321 333322 34445554457
Q ss_pred HHHHHHHHHHHhCCCCeEEEec-----cccc-------------c---ccc-hHHH-HHHHHHHhCCCEEEEeCC----C
Q 021163 150 MNAIFLQATMESIGIPTRVQTA-----FRMS-------------E---VAE-PYIR-RRAVRHLEKGRVVIFAAG----T 202 (316)
Q Consensus 150 lna~Lv~~~L~~~Gi~a~~l~~-----~~~~-------------~---~~~-~~i~-~~l~~lL~~g~IPVv~g~----~ 202 (316)
+|..|.+ .++ .|++++++.+ .+.. + ..+ ..++ +.+..+|++|+|||+++. +
T Consensus 104 v~~~l~~-~l~-~g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~~~i~~ll~~g~ipV~~~i~~~~~ 181 (441)
T PRK05279 104 LRLDIEA-RLS-MGLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDAEAIRRQLDSGAIVLLSPLGYSPT 181 (441)
T ss_pred HHHHHHH-HHh-ccCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEeHHHHHHHHHCCCeEEECCceECCC
Confidence 8887764 665 5888765321 1110 0 010 0123 335679999999999873 2
Q ss_pred CC-CCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC----------CCCCchHHHHHH
Q 021163 203 GN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----------DLSVMDMTAITL 271 (316)
Q Consensus 203 g~-~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l----------G~~v~k~~Aa~~ 271 (316)
|. .++++|.+|+.||.+|+|++|+|+|||||||++ ++++|++++.+|++++ |.|..|++++..
T Consensus 182 g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~~Kv~~a~~ 255 (441)
T PRK05279 182 GESFNLTMEEVATQVAIALKADKLIFFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTARFLRAAVK 255 (441)
T ss_pred CCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHHHHHHHHHH
Confidence 22 356899999999999999999999999999963 4789999998776542 556779999999
Q ss_pred HHhCCC-cEEEEeCCCcchHHHHhc-CCCcceEEecCCC
Q 021163 272 CQENNI-PVVVFNLNQPGNIAKAIQ-GERVGTLIGGTWN 308 (316)
Q Consensus 272 a~~~gI-~v~I~ng~~p~~i~~~l~-G~~~GT~I~~~~~ 308 (316)
+.++|+ +++|+++..|+++...+. .++.||.|..+..
T Consensus 256 ~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~~y 294 (441)
T PRK05279 256 ACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVMESL 294 (441)
T ss_pred HHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecCch
Confidence 999999 699999999999987654 4468999998643
No 74
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.89 E-value=2.5e-22 Score=186.09 Aligned_cols=198 Identities=15% Similarity=0.204 Sum_probs=139.5
Q ss_pred EEEECccccccCCCCC---------CCCCeEEEEChhHHHHHHHHcccCCCCcc-----------HHHHHHHHHHHHHHH
Q 021163 94 LLKVSGEALAGDHTQN---------IDPKVAIVVGGGNIFRGASAAGNSGLDRS-----------SADYIGMLATVMNAI 153 (316)
Q Consensus 94 VIKiGGS~i~~~~~~~---------~~~~vVIVhGGG~~a~G~~~l~~~gl~~~-----------~~d~v~~la~~lna~ 153 (316)
||||||+++++.-... ...++|||||||++++.+ ++++|++.+ ..+.+.+....+|..
T Consensus 2 ViKiGG~~~~~~l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~--~~~~gi~~~~~~g~RvT~~~~l~~v~~al~~vn~~ 79 (248)
T cd04252 2 VIKVGGAIIEDDLDELAASLSFLQHVGLYPIVVHGAGPQLNEE--LEAAGVEPEYVDGLRVTDPETLAVARKVFLEENLK 79 (248)
T ss_pred EEEEChhhhhccHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHH--HHHcCCCcEeeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 8999999997742110 234789999999995444 433444432 234455533489988
Q ss_pred HHHHHHHhCCCCeEEEecccc-------cccc---c-hHHH-HHHHHHHhCCCEEEEeCC----CCC-CCCCchHHHHHH
Q 021163 154 FLQATMESIGIPTRVQTAFRM-------SEVA---E-PYIR-RRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALR 216 (316)
Q Consensus 154 Lv~~~L~~~Gi~a~~l~~~~~-------~~~~---~-~~i~-~~l~~lL~~g~IPVv~g~----~g~-~~~~sD~iAa~L 216 (316)
+++ .|.++|++++++++... .++. + ..++ +.+..+|+.|+|||+++. .+. .+.++|.+|+.+
T Consensus 80 iv~-~l~~~g~~a~~l~~~~~~a~~~~~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~l 158 (248)
T cd04252 80 LVE-ALERNGARARPITSGVFEAEYLDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGEL 158 (248)
T ss_pred HHH-HHHhCCCCcccccCceEEEEECcCccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHH
Confidence 886 78899999987654211 0111 1 1133 335789999999999984 222 356899999999
Q ss_pred HHhcCCcEEEEecccCcccccCCCCCCCCceeccccHH-HHhhC-------CCCCchHHHHHHHHhC--CC-cEEEEeCC
Q 021163 217 CAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ-EVTSK-------DLSVMDMTAITLCQEN--NI-PVVVFNLN 285 (316)
Q Consensus 217 A~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~-e~~~l-------G~~v~k~~Aa~~a~~~--gI-~v~I~ng~ 285 (316)
|.+|+|++++|+|||||||++ ++++|++++.. +++++ |.|..|++++..|.+. ++ .++|++
T Consensus 159 A~aL~a~kli~ltdv~GV~~~------~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~-- 230 (248)
T cd04252 159 ARVLEPLKIVFLNETGGLLDG------TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSSVSITS-- 230 (248)
T ss_pred HHHcCCCeEEEEECCcccCCC------CCCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceEEEEEC--
Confidence 999999999999999999974 36799999863 44322 5677799999988887 44 588876
Q ss_pred CcchHH-HHhcCCCcceEE
Q 021163 286 QPGNIA-KAIQGERVGTLI 303 (316)
Q Consensus 286 ~p~~i~-~~l~G~~~GT~I 303 (316)
++.+. +++..+..||.|
T Consensus 231 -~~~ll~elf~~~g~GT~i 248 (248)
T cd04252 231 -PDDLQKELFTHSGAGTLI 248 (248)
T ss_pred -CchHHHHHhcCCCCCccC
Confidence 47765 466666789975
No 75
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.88 E-value=1.8e-21 Score=185.11 Aligned_cols=208 Identities=24% Similarity=0.345 Sum_probs=145.2
Q ss_pred CeEEEEECccccccCCCCCC---------------------CCCeEEEEChhHH----HHHHHHcccCCCCccH-----H
Q 021163 91 QRVLLKVSGEALAGDHTQNI---------------------DPKVAIVVGGGNI----FRGASAAGNSGLDRSS-----A 140 (316)
Q Consensus 91 k~iVIKiGGS~i~~~~~~~~---------------------~~~vVIVhGGG~~----a~G~~~l~~~gl~~~~-----~ 140 (316)
+++||++||.+|........ ..++||+||.|+. +.+....+..+.+.-+ .
T Consensus 3 ~~ivvalgGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~~~~~~pld~~~a 82 (313)
T PRK12454 3 KRIVIALGGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVAGA 82 (313)
T ss_pred ceEEEEeChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhcccCCCCCccchhhh
Confidence 69999999999987543211 1367999999994 4443333221333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEeccc-----ccc--ccch-------H-------------------------
Q 021163 141 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFR-----MSE--VAEP-------Y------------------------- 181 (316)
Q Consensus 141 d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~-----~~~--~~~~-------~------------------------- 181 (316)
+..++++..++-.| ...|...|++....+.++ ..| |.+| |
T Consensus 83 ~sqG~igy~l~~al-~~~l~~~g~~~~v~t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~~~~d~g~g~R 161 (313)
T PRK12454 83 MTQGWIGYMIQQAL-RNELAKRGIEKQVATIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGRGWR 161 (313)
T ss_pred hhhHHHHHHHHHHH-HHHHHhcCCCCceEEEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEcCCCceE
Confidence 44566777775554 457888887653333222 110 0000 0
Q ss_pred -----------HH-HHHHHHHhCCCEEEEeCCCCCC-------------CCCchHHHHHHHHhcCCcEEEEecccCcccc
Q 021163 182 -----------IR-RRAVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVYD 236 (316)
Q Consensus 182 -----------i~-~~l~~lL~~g~IPVv~g~~g~~-------------~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt 236 (316)
++ +.+..+|++|.|||++|+.|.| ++|+|.+|++||.+|+||+|+|+|||||||+
T Consensus 162 rvV~SP~P~~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~ 241 (313)
T PRK12454 162 RVVPSPDPLGIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYL 241 (313)
T ss_pred EEeCCCCCccccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeC
Confidence 12 2346789999999999764433 3467999999999999999999999999998
Q ss_pred cCCCCCCCCceeccccHHHHhhC--------CCCCchHHHHHHHHhCC-CcEEEEeCCCcchHHHHhcCCCcceEEec
Q 021163 237 DNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQENN-IPVVVFNLNQPGNIAKAIQGERVGTLIGG 305 (316)
Q Consensus 237 ~dP~~~p~aklI~~It~~e~~~l--------G~~v~k~~Aa~~a~~~g-I~v~I~ng~~p~~i~~~l~G~~~GT~I~~ 305 (316)
+ ++ .|++++|++++.+|+.++ |.|..|++|+..+.+.| .+++|++ ++++.++++|+ .||+|.+
T Consensus 242 ~-~~-~p~~~~i~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~---~~~i~~aL~G~-~GT~I~~ 313 (313)
T PRK12454 242 N-YG-KPDQKPLDKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIAS---LEKAVEALEGK-TGTRIIP 313 (313)
T ss_pred C-CC-CCCCeEccccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECc---hHHHHHHHCCC-CCeEeCC
Confidence 6 43 578999999999887652 45777999997777765 5788874 67889999998 7999964
No 76
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.87 E-value=9.9e-22 Score=184.26 Aligned_cols=198 Identities=11% Similarity=0.103 Sum_probs=145.3
Q ss_pred CCCeEEEEECccccccCCC-CC----------CCCCeEEEEChhHHHHHHHHcccCCCCccHHHHHHHHHHHHHHHHHHH
Q 021163 89 KWQRVLLKVSGEALAGDHT-QN----------IDPKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 157 (316)
Q Consensus 89 ~~k~iVIKiGGS~i~~~~~-~~----------~~~~vVIVhGGG~~a~G~~~l~~~gl~~~~~d~v~~la~~lna~Lv~~ 157 (316)
..+-+|||+||+++.+++. .. +.-++|||||||+.+...-. +.........+. ..|..|++
T Consensus 34 ~~~f~VIK~GG~~~~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~------~~~~~~~~~v~~-~~n~~Lv~- 105 (271)
T cd04236 34 WPAFAVLEVDHSVFRSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS------DLELQAARSRLV-KDCKTLVE- 105 (271)
T ss_pred CCCEEEEEEChhhhcCchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc------CCcchheehhHH-HHHHHHHH-
Confidence 4678999999999975542 11 23578999999998654322 222222222244 68888885
Q ss_pred HHHhCCCCeEEEecccc----c------cccc-hHHHH-HHHHHHhCCCEEEEeCC----CCC-CCCCchHHHHHHHHhc
Q 021163 158 TMESIGIPTRVQTAFRM----S------EVAE-PYIRR-RAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEI 220 (316)
Q Consensus 158 ~L~~~Gi~a~~l~~~~~----~------~~~~-~~i~~-~l~~lL~~g~IPVv~g~----~g~-~~~~sD~iAa~LA~~L 220 (316)
.|+++|++++++++... . ..++ ..++. .+..+|+.|+|||+++. +|. .++++|.+|+.||.+|
T Consensus 106 ~L~~~G~~A~gl~g~~~~i~a~~~~d~g~vG~V~~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL 185 (271)
T cd04236 106 ALQANSAAAHPLFSGESVLQAEEPEPGASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKAL 185 (271)
T ss_pred HHHhCCCCeeeecCccceEEEEEcccCCccceEEEECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHHHHHHHHc
Confidence 89999999998765421 0 0111 11343 35679999999999984 222 3568999999999999
Q ss_pred CCcEEEEecccCcccccCCCCCCCCceeccccH-HHHhhC-------CCC---CchHHHHHHHHhCCCcEEEEeCCCcch
Q 021163 221 NAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY-QEVTSK-------DLS---VMDMTAITLCQENNIPVVVFNLNQPGN 289 (316)
Q Consensus 221 ~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~-~e~~~l-------G~~---v~k~~Aa~~a~~~gI~v~I~ng~~p~~ 289 (316)
+|++|+|+||++|||++ ++++|++++. +|++++ |.| +.|++++..+...|+.|+|++ |+.
T Consensus 186 ~A~KLIfltd~~GV~~~------~g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~---~~~ 256 (271)
T cd04236 186 QPIKVIFLNRSGGLRDQ------KHKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVITS---AET 256 (271)
T ss_pred CCCEEEEEeCCcceECC------CCCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEeC---hHH
Confidence 99999999999999973 3689999995 777653 556 789999999999999999997 666
Q ss_pred H-HHHhcCCCcceEE
Q 021163 290 I-AKAIQGERVGTLI 303 (316)
Q Consensus 290 i-~~~l~G~~~GT~I 303 (316)
+ .+++...+.||.|
T Consensus 257 ll~elft~~g~GT~~ 271 (271)
T cd04236 257 LLTELFSHKGSGTLF 271 (271)
T ss_pred HHHHHhccCCCCCcC
Confidence 5 4788888889975
No 77
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.87 E-value=1.2e-20 Score=180.33 Aligned_cols=208 Identities=20% Similarity=0.255 Sum_probs=145.4
Q ss_pred CeEEEEECccccccCCCC-C--------------------CCCCeEEEEChhHHHHHHH-Hccc----CCCCccHHHH-H
Q 021163 91 QRVLLKVSGEALAGDHTQ-N--------------------IDPKVAIVVGGGNIFRGAS-AAGN----SGLDRSSADY-I 143 (316)
Q Consensus 91 k~iVIKiGGS~i~~~~~~-~--------------------~~~~vVIVhGGG~~a~G~~-~l~~----~gl~~~~~d~-v 143 (316)
|++|||+||+++.++... . ...++|||||+|+.+...- ..+. .|++....+. +
T Consensus 3 k~iVI~lGGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~~g~rvt~~~~~v 82 (316)
T PRK12352 3 ELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHEREGLPLTPLANCV 82 (316)
T ss_pred cEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCcccccCCCCCCCHHHHH
Confidence 699999999999774321 1 2347899999999986542 2221 2455555542 2
Q ss_pred ----HHHHHHHHHHHHHHHHHhCCCCe-------EEEeccccc---------cc----------------------cc--
Q 021163 144 ----GMLATVMNAIFLQATMESIGIPT-------RVQTAFRMS---------EV----------------------AE-- 179 (316)
Q Consensus 144 ----~~la~~lna~Lv~~~L~~~Gi~a-------~~l~~~~~~---------~~----------------------~~-- 179 (316)
+.++..+|+.|.. .|..+|..+ +.+++.+.. .+ ..
T Consensus 83 ~~~~g~i~~~i~~~L~~-~l~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G~ 161 (316)
T PRK12352 83 ADTQGGIGYLIQQALNN-RLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGY 161 (316)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCCe
Confidence 2345678887774 777777553 122311110 00 00
Q ss_pred ----------hHHHHH-HHHHHhCCCEEEEeCC---------CCC-----CCCCchHHHHHHHHhcCCcEEEEecccCcc
Q 021163 180 ----------PYIRRR-AVRHLEKGRVVIFAAG---------TGN-----PFFTTDTAAALRCAEINAEVVLKATNVDGV 234 (316)
Q Consensus 180 ----------~~i~~~-l~~lL~~g~IPVv~g~---------~g~-----~~~~sD~iAa~LA~~L~Ad~LiilTDVdGV 234 (316)
..++.. +..+|++|+|+|..|+ .+. .+++.|.+|+.+|.+|+||+|+|+|||+||
T Consensus 162 rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV 241 (316)
T PRK12352 162 RRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKV 241 (316)
T ss_pred EEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhh
Confidence 012333 4678999999555432 221 126789999999999999999999999999
Q ss_pred cccCCCCCCCCceeccccHHHHhhC--------CCCCchHHHHHHHHhCCC-cEEEEeCCCcchHHHHhcCCCcceEEec
Q 021163 235 YDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGG 305 (316)
Q Consensus 235 yt~dP~~~p~aklI~~It~~e~~~l--------G~~v~k~~Aa~~a~~~gI-~v~I~ng~~p~~i~~~l~G~~~GT~I~~ 305 (316)
|.+++ +|++++|++++.+|++++ |.|.+|++||..+.+.|+ +++|++ ++.+.++|+|+ .||+|..
T Consensus 242 ~~d~~--~~~~~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~---~~~i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 242 CIHFG--KPQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITT---PECLPAALRGE-TGTHIIK 315 (316)
T ss_pred ccCCC--CCCcccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcc---hHHHHHHHcCC-CCeEEEe
Confidence 98764 367789999999987753 457889999998888887 599986 78899999998 8999963
No 78
>PRK12686 carbamate kinase; Reviewed
Probab=99.87 E-value=8.8e-21 Score=180.66 Aligned_cols=207 Identities=17% Similarity=0.252 Sum_probs=141.7
Q ss_pred CCeEEEEECccccccCCCCC-------------------CCCCeEEEEChhHHHHHHHHccc-----CCCCccHHHHHHH
Q 021163 90 WQRVLLKVSGEALAGDHTQN-------------------IDPKVAIVVGGGNIFRGASAAGN-----SGLDRSSADYIGM 145 (316)
Q Consensus 90 ~k~iVIKiGGS~i~~~~~~~-------------------~~~~vVIVhGGG~~a~G~~~l~~-----~gl~~~~~d~v~~ 145 (316)
++++|||+||+++.++.... ...++||+||+|+.+ |...++. ...+.-++|..++
T Consensus 2 ~~~iVialGGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQV-g~~~~~~~~~~~~~~~~~pl~~~~a 80 (312)
T PRK12686 2 KEKIVIALGGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQV-GNLLLQQAESNSNKVPAMPLDTCVA 80 (312)
T ss_pred CCEEEEEcChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHHHhccccCCCCCChhhhhh
Confidence 56899999999998865320 124789999999998 4332211 1245555676544
Q ss_pred H-----HHHHHHHHHHHHHHhCCCCe--E---EEeccccc---------------------------------cccch--
Q 021163 146 L-----ATVMNAIFLQATMESIGIPT--R---VQTAFRMS---------------------------------EVAEP-- 180 (316)
Q Consensus 146 l-----a~~lna~Lv~~~L~~~Gi~a--~---~l~~~~~~---------------------------------~~~~~-- 180 (316)
. +-.++..| ...|...|+.. + -|...+.. +..+.
T Consensus 81 ~sqg~iGy~~~q~l-~~~l~~r~~~~~v~~vvtqv~Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~~~d~~~G~r 159 (312)
T PRK12686 81 MSQGMIGYWLQNAL-NNELTERGIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGYR 159 (312)
T ss_pred hccchhhHHHHHHH-HHHHHhcCCCCCceEEEEEEEECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcccccCCCCeE
Confidence 2 22233332 23566556432 1 12222110 00000
Q ss_pred ----------HHHHH-HHHHHhCCCEEEEeCCCCC-------------CCCCchHHHHHHHHhcCCcEEEEecccCcccc
Q 021163 181 ----------YIRRR-AVRHLEKGRVVIFAAGTGN-------------PFFTTDTAAALRCAEINAEVVLKATNVDGVYD 236 (316)
Q Consensus 181 ----------~i~~~-l~~lL~~g~IPVv~g~~g~-------------~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt 236 (316)
.++.+ +..+|++|+|||.+|+.|. .++++|.+|++||.+|+||+|+|+|||||||+
T Consensus 160 rvV~sP~P~~ive~~~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~ 239 (312)
T PRK12686 160 RVVPSPKPQEIIEHDTIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFI 239 (312)
T ss_pred EeeCCCCCccccCHHHHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhcc
Confidence 13333 4679999999887754221 25689999999999999999999999999998
Q ss_pred cCCCCCCCCceeccccHHHHhhC--------CCCCchHHHHHHHHhC--CCcEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163 237 DNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQEN--NIPVVVFNLNQPGNIAKAIQGERVGTLIG 304 (316)
Q Consensus 237 ~dP~~~p~aklI~~It~~e~~~l--------G~~v~k~~Aa~~a~~~--gI~v~I~ng~~p~~i~~~l~G~~~GT~I~ 304 (316)
+ |+ .|++++|++++.+|+.++ |.|..|++|+..+.+. |.+++|++ ++.+.++++|+ .||+|.
T Consensus 240 ~-~~-~p~ak~I~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~---~~~i~~aL~G~-~GT~I~ 311 (312)
T PRK12686 240 N-FN-KPNQQKLDDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITS---LEQAKEALAGN-AGTHIT 311 (312)
T ss_pred C-CC-CCCCeECCccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeC---chHHHHHhCCC-CCeEEe
Confidence 4 54 478999999999887653 5677899999998875 56788886 68888999998 799985
No 79
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=99.86 E-value=5.6e-21 Score=166.96 Aligned_cols=192 Identities=22% Similarity=0.320 Sum_probs=145.3
Q ss_pred EEEECccccccCCC------CCCCCCeEEEEChhHHHHHHHHcc-cCCCCccHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 021163 94 LLKVSGEALAGDHT------QNIDPKVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPT 166 (316)
Q Consensus 94 VIKiGGS~i~~~~~------~~~~~~vVIVhGGG~~a~G~~~l~-~~gl~~~~~d~v~~la~~lna~Lv~~~L~~~Gi~a 166 (316)
|||+||+...+... .++.+.++||.|||.||+-.+... +.+++....+++...+-..-..++++.........
T Consensus 3 vVk~~Gs~~~~~~~~~~~ale~~~~~i~iVpGGg~FAd~VR~id~~~~lSdsasHwmAI~~Md~~G~~lad~~~~~~~~t 82 (212)
T COG2054 3 VVKKGGSGVAERAAAVKEALENLQRSILIVPGGGIFADLVRKIDEEFGLSDSASHWMAITAMDQYGFYLADLASRFVTDT 82 (212)
T ss_pred eEEecCCChHHHHHHHHHHHHhhcceEEEecCchHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhhhcccccce
Confidence 78888887754421 135567999999999998876554 47899998898877665444455554333333222
Q ss_pred EEEeccccccccchHHHHHHHHHHhCCCEEEEeCC------CC---CCCCCchHHHHHHHHhcCCcEEEEecccCccccc
Q 021163 167 RVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG------TG---NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDD 237 (316)
Q Consensus 167 ~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~------~g---~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~ 237 (316)
+ .+ .....+.+.+||+-+. +. .|.+++|.+|+++|+++++.++++.|||||||+.
T Consensus 83 v----~e------------p~~~i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~ 146 (212)
T COG2054 83 V----TE------------PEDGIKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEE 146 (212)
T ss_pred e----ec------------hhhccCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCccccc
Confidence 1 11 1122344555555542 22 4678999999999999999999999999999998
Q ss_pred CCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcCCC-cceEEecC
Q 021163 238 NPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGER-VGTLIGGT 306 (316)
Q Consensus 238 dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~-~GT~I~~~ 306 (316)
+| +++++++|...|+.. |...+|+.+.+++.++++.++|+|+..|+++.++++|+. +||+|.+.
T Consensus 147 ~~----~~kLv~eI~A~dl~~-~~t~vD~~~P~Ll~k~~m~~~Vvng~~pervi~~lrGk~~v~T~Ivg~ 211 (212)
T COG2054 147 DP----KGKLVREIRASDLKT-GETSVDPYLPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIVGG 211 (212)
T ss_pred CC----cchhhhhhhHhhccc-CcccccchhhHHHHHcCCceEEECCCCHHHHHHHHhccccceEEEeCC
Confidence 76 469999999998875 677899999999999999999999999999999999965 79999763
No 80
>PRK12354 carbamate kinase; Reviewed
Probab=99.83 E-value=2e-19 Score=170.79 Aligned_cols=117 Identities=28% Similarity=0.300 Sum_probs=94.0
Q ss_pred HHHHHhCCCEEEEeCC---------CCC-----CCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccc
Q 021163 186 AVRHLEKGRVVIFAAG---------TGN-----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTL 251 (316)
Q Consensus 186 l~~lL~~g~IPVv~g~---------~g~-----~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~I 251 (316)
+..+|++|+|||..|+ ++. .++|+|.+|++||.+++||+|+|+|||||||++++ .|++++|+++
T Consensus 168 I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p~~k~i~~i 245 (307)
T PRK12354 168 IRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KPTQRAIAQA 245 (307)
T ss_pred HHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CCCCeECCCC
Confidence 5679999997666543 221 15689999999999999999999999999998753 5788999999
Q ss_pred cHHHHhhC----CCCCchHHHHHHHHhCC-CcEEEEeCCCcchHHHHhcCCCcceEEecCCC
Q 021163 252 TYQEVTSK----DLSVMDMTAITLCQENN-IPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 308 (316)
Q Consensus 252 t~~e~~~l----G~~v~k~~Aa~~a~~~g-I~v~I~ng~~p~~i~~~l~G~~~GT~I~~~~~ 308 (316)
+.+|+.++ |.|..|++|+..+.+.+ .+++|. +++.+.++++|+ .||+|.+...
T Consensus 246 t~~e~~~~~f~~GgM~pKV~AA~~~~~~gg~~viI~---~~~~l~~al~G~-~GT~I~~~~~ 303 (307)
T PRK12354 246 TPDELRELGFAAGSMGPKVEAACEFVRATGKIAGIG---SLEDIQAILAGE-AGTRISPETA 303 (307)
T ss_pred CHHHHHhhCCCcCChHHHHHHHHHHHHhCCCEEEEC---CHHHHHHHHCCC-CceEEecCCC
Confidence 99988765 67788999997776654 467774 467888999987 7999987544
No 81
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=99.81 E-value=1.4e-19 Score=173.58 Aligned_cols=165 Identities=23% Similarity=0.297 Sum_probs=134.8
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecccccccc-----ch-HHH---HHHHHH-----HhCCCEEEEe
Q 021163 134 GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-----EP-YIR---RRAVRH-----LEKGRVVIFA 199 (316)
Q Consensus 134 gl~~~~~d~v~~la~~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~~-----~~-~i~---~~l~~l-----L~~g~IPVv~ 199 (316)
.++.+..|++..+++.++.++++++|+..|+++...+.++..... .. ... ..+.++ .....+|||.
T Consensus 186 Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~~d~~~a~~~av~k~~~~~~aken~VPVvT 265 (559)
T KOG0456|consen 186 ELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTNDDILEATYPAVSKLLSGDWAKENAVPVVT 265 (559)
T ss_pred hcchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccchhHHHHHHHHHHHhcccccccCCccceEe
Confidence 344555688888999999999999999999999876666553322 11 011 111122 1346799999
Q ss_pred CCCC----------CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---CCCCchH
Q 021163 200 AGTG----------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDM 266 (316)
Q Consensus 200 g~~g----------~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G~~v~k~ 266 (316)
||.| .+++.+|.+|+.||.+|+++++.+|.|||||+|+||+++|.|+++|.++++|+.|+ |+.++||
T Consensus 266 Gf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaYfGaqVlHP 345 (559)
T KOG0456|consen 266 GFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLHP 345 (559)
T ss_pred eccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHHhhhhhhccc
Confidence 9744 34688999999999999999999999999999999999999999999999999886 8899999
Q ss_pred HHHHHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEecCC
Q 021163 267 TAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 307 (316)
Q Consensus 267 ~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~~~ 307 (316)
..++++.+..||++|.|..+|. ..||.|.++.
T Consensus 346 ~sM~~~~~~~IPvRvKN~~NP~---------~~GTvI~~d~ 377 (559)
T KOG0456|consen 346 FSMRPAREGRIPVRVKNSYNPT---------APGTVITPDR 377 (559)
T ss_pred cccchhhccCcceEeecCCCCC---------CCceEeccch
Confidence 9999999999999999998885 5799999864
No 82
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.81 E-value=8.1e-19 Score=172.73 Aligned_cols=185 Identities=18% Similarity=0.235 Sum_probs=131.5
Q ss_pred CCCeEEEEECccccccCCCC---------CCCCCeEEEEChhHHHHHHH-Hccc-----CCCCcc---HHHHHHHHHHHH
Q 021163 89 KWQRVLLKVSGEALAGDHTQ---------NIDPKVAIVVGGGNIFRGAS-AAGN-----SGLDRS---SADYIGMLATVM 150 (316)
Q Consensus 89 ~~k~iVIKiGGS~i~~~~~~---------~~~~~vVIVhGGG~~a~G~~-~l~~-----~gl~~~---~~d~v~~la~~l 150 (316)
+.+++|||+||+++.+.... .+..++|||||||+.++..- .++. .|++.+ .++.+.+.....
T Consensus 35 ~~~~~VIKiGG~~l~~~~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~~~v~G~RVTd~~tl~vv~~~l~~v 114 (398)
T PRK04531 35 AERFAVIKVGGAVLRDDLEALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEKETVNGLRVTSPEALAIVRKVFQRS 114 (398)
T ss_pred CCcEEEEEEChHHhhcCHHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCcEEECCEecCCHHHHHHHHHHHHHH
Confidence 34999999999999754211 12357899999999998653 3321 233222 234444322355
Q ss_pred HHHHHHHHHHhCCCCeEEEeccccccccchHHHHHHHHHHhCCCEEEEeCC----CCCC-CCCchHHHHHHHHhcCCcEE
Q 021163 151 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVV 225 (316)
Q Consensus 151 na~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~----~g~~-~~~sD~iAa~LA~~L~Ad~L 225 (316)
|..|+++ +..+|+.|.|||+++. .|.. ++++|.+|+.||.+|+|++|
T Consensus 115 n~~lv~~----------------------------I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~a~KL 166 (398)
T PRK04531 115 NLDLVEA----------------------------VESSLRAGSIPVIASLGETPSGQILNINADVAANELVSALQPYKI 166 (398)
T ss_pred HHHHHHH----------------------------HHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHHHHcCCCEE
Confidence 5555442 4568999999999874 2332 46899999999999999999
Q ss_pred EEecccCcccccCCCCCCCCceeccccH-HHHhhC-------CCCCchHHHHHHHHhCCCcEEEEeCCCcchHHH-HhcC
Q 021163 226 LKATNVDGVYDDNPRRNPNARLLDTLTY-QEVTSK-------DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK-AIQG 296 (316)
Q Consensus 226 iilTDVdGVyt~dP~~~p~aklI~~It~-~e~~~l-------G~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~-~l~G 296 (316)
+++|||+|||+. ++++|++|+. +|...+ |.|..|++++..|.+..-.++++....|+++.. ++..
T Consensus 167 Ifltdv~GV~d~------~g~~i~~i~~~~e~~~l~~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~~Ll~eLft~ 240 (398)
T PRK04531 167 IFLTGTGGLLDA------DGKLISSINLSTEYDHLMQQPWINGGMKLKLEQIKELLDRLPLESSVSITSPSDLAKELFTH 240 (398)
T ss_pred EEEECCCCccCC------CCCCcccCCHHHHHHHHHhcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCCHHHHHHccC
Confidence 999999999974 3689999985 344432 557779999999886534577777788999875 5556
Q ss_pred CCcceEEecCC
Q 021163 297 ERVGTLIGGTW 307 (316)
Q Consensus 297 ~~~GT~I~~~~ 307 (316)
++.||.|....
T Consensus 241 ~G~GT~I~~g~ 251 (398)
T PRK04531 241 KGSGTLVRRGE 251 (398)
T ss_pred CCCCeEEecCC
Confidence 66899998744
No 83
>PLN02825 amino-acid N-acetyltransferase
Probab=99.77 E-value=8.1e-18 Score=170.07 Aligned_cols=215 Identities=16% Similarity=0.197 Sum_probs=153.5
Q ss_pred CCCCeEEEEECccccccCCCCC----------CCCCeEEEEChhHHHHHHH-Hccc-----CCCCcc---HHHHHHHHHH
Q 021163 88 YKWQRVLLKVSGEALAGDHTQN----------IDPKVAIVVGGGNIFRGAS-AAGN-----SGLDRS---SADYIGMLAT 148 (316)
Q Consensus 88 ~~~k~iVIKiGGS~i~~~~~~~----------~~~~vVIVhGGG~~a~G~~-~l~~-----~gl~~~---~~d~v~~la~ 148 (316)
.+.|++|||+||+++.++.... +..++|||||||+.++..- ..+. .|++.+ .++.+..+++
T Consensus 15 ~rgktfVIk~gG~~l~~~~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~G~RVTd~~~L~~~~~~~G 94 (515)
T PLN02825 15 HRGSTFVVVISGEVVAGPHLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVGAYRITDSAALQASMEAAG 94 (515)
T ss_pred HCCCEEEEEECchhhcCchHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHHHHHHHHH
Confidence 3789999999999997653211 2358899999999998763 3321 344333 3455555777
Q ss_pred HHHHHHHHH--------HHHhCCCCe----EEEeccccc-------------ccc---c-hHHHHH-HHHHHhCCCEEEE
Q 021163 149 VMNAIFLQA--------TMESIGIPT----RVQTAFRMS-------------EVA---E-PYIRRR-AVRHLEKGRVVIF 198 (316)
Q Consensus 149 ~lna~Lv~~--------~L~~~Gi~a----~~l~~~~~~-------------~~~---~-~~i~~~-l~~lL~~g~IPVv 198 (316)
.+|..|.+. .|+++|+++ +.+.+.+.. ++. + ..++.. +..+|+.|.|||+
T Consensus 95 ~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~~L~~g~Ipvi 174 (515)
T PLN02825 95 KIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKERLDSNCIVLL 174 (515)
T ss_pred HHHHHHHHhhccccchhHHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcHHHHHHHHhCCCeEEE
Confidence 888888763 368889987 444443321 111 1 124444 5679999999999
Q ss_pred eCC----CCCC-CCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhC---C----------
Q 021163 199 AAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---D---------- 260 (316)
Q Consensus 199 ~g~----~g~~-~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~l---G---------- 260 (316)
++. .|.. ++++|.+|+.+|.+|+|++||++||++ ++++ ++++|++++.+|++++ +
T Consensus 175 splg~s~~Ge~~NinaD~vA~avA~aL~A~KLI~ltd~~-~~~~------~g~li~~l~~~e~~~li~~~~~~~~~~~~~ 247 (515)
T PLN02825 175 SNLGYSSSGEVLNCNTYEVATACALAIGADKLICIVDGP-ILDE------NGRLIRFMTLEEADMLIRKRAKQSEIAANY 247 (515)
T ss_pred CCceECCCCCEEeeCHHHHHHHHHHHcCCCeEEEEeCcc-eecC------CCCCcCcCCHHHHHHHHHhhhhcchhhhhh
Confidence 983 3433 467899999999999999999999977 5543 3578999988776532 1
Q ss_pred --------------CC-------------------------------C-------------------------chHHHHH
Q 021163 261 --------------LS-------------------------------V-------------------------MDMTAIT 270 (316)
Q Consensus 261 --------------~~-------------------------------v-------------------------~k~~Aa~ 270 (316)
.. - .++.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 327 (515)
T PLN02825 248 VKAVGGEDYSYSLGLDSVNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNGLSGEQGFAIGGEERLSRLNGYLSELAAAA 327 (515)
T ss_pred hhhccccccccccccccccccccccccccccccccccccccccccccCcccccccccccccchhhchhhhhHHHHHHHHH
Confidence 00 0 0377888
Q ss_pred HHHhCCCc-EEEEeCCCcchHH-HHhcCCCcceEEecCCCc
Q 021163 271 LCQENNIP-VVVFNLNQPGNIA-KAIQGERVGTLIGGTWNS 309 (316)
Q Consensus 271 ~a~~~gI~-v~I~ng~~p~~i~-~~l~G~~~GT~I~~~~~~ 309 (316)
.|.+.|++ ++++++...+.+. +++..+++||.|..+...
T Consensus 328 ~a~~~gv~r~hl~~~~~~gall~elft~dg~gt~i~~~~~e 368 (515)
T PLN02825 328 FVCRGGVQRVHLLDGTIEGVLLLELFTRDGMGTMIASDMYE 368 (515)
T ss_pred HHHHcCCCeEEeccCCCCchHHHHhhccCCceeEeccChHh
Confidence 99999996 9999999998885 799999999999876543
No 84
>PRK09411 carbamate kinase; Reviewed
Probab=99.76 E-value=1.9e-17 Score=156.44 Aligned_cols=207 Identities=23% Similarity=0.303 Sum_probs=140.5
Q ss_pred CeEEEEECccccccCCCC-CC-------------------CCCeEEEEChhHHHHHHHHccc---CCCCccHHHHHHHHH
Q 021163 91 QRVLLKVSGEALAGDHTQ-NI-------------------DPKVAIVVGGGNIFRGASAAGN---SGLDRSSADYIGMLA 147 (316)
Q Consensus 91 k~iVIKiGGS~i~~~~~~-~~-------------------~~~vVIVhGGG~~a~G~~~l~~---~gl~~~~~d~v~~la 147 (316)
+++||-+||.+|...... .. +.++||.||-|+.. |.-.++. ...+.-++|..++..
T Consensus 2 ~~iVvAlGGNAl~~~g~~~~~~~q~~~v~~~a~~ia~l~~~~~~vitHGNGPQV-G~l~~~~~~~~~~~~~pld~~~a~s 80 (297)
T PRK09411 2 KTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQV-GLLALQNLAWKEVEPYPLDVLVAES 80 (297)
T ss_pred CeEEEEcCchhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEEEeCCccHH-HHHHHHHHhhcCCCCCCchhhhhhc
Confidence 589999999999875421 10 24789999999997 4433221 123555567655432
Q ss_pred HHHHHHHHHHHHHhCCCCe--E---EEecccccc------------c--------------------cc----------h
Q 021163 148 TVMNAIFLQATMESIGIPT--R---VQTAFRMSE------------V--------------------AE----------P 180 (316)
Q Consensus 148 ~~lna~Lv~~~L~~~Gi~a--~---~l~~~~~~~------------~--------------------~~----------~ 180 (316)
.=+=-++++++|...|+.. + -|...+..| + .+ |
T Consensus 81 qG~iGy~l~q~l~~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~~~dg~g~rrVVpSP~P 160 (297)
T PRK09411 81 QGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQP 160 (297)
T ss_pred ccHHHHHHHHHHHHcCCCCCeEEEEEEEEECCCCccccCCCCccCCccCHHHHHHHHHhcCCEEEecCCceEEEccCCCC
Confidence 2111234556676666532 1 122222110 0 00 0
Q ss_pred --HHH-HHHHHHHhCCCEEEEeCCCC----------CCCCCchHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCce
Q 021163 181 --YIR-RRAVRHLEKGRVVIFAAGTG----------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARL 247 (316)
Q Consensus 181 --~i~-~~l~~lL~~g~IPVv~g~~g----------~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~akl 247 (316)
.++ +.+..++++|+|||.+|+.| ..++++|.+|+.||.+|+||+|+|+|||||||+++ ..|++++
T Consensus 161 ~~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~--~~p~~~~ 238 (297)
T PRK09411 161 RKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENW--GTPQQRA 238 (297)
T ss_pred cceECHHHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCchhhccCC--CCCCCcC
Confidence 023 33567999999977765422 13678999999999999999999999999999864 3677899
Q ss_pred eccccHHHHhhC----CCCCchHHHHHHHHhC-CCcEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163 248 LDTLTYQEVTSK----DLSVMDMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIG 304 (316)
Q Consensus 248 I~~It~~e~~~l----G~~v~k~~Aa~~a~~~-gI~v~I~ng~~p~~i~~~l~G~~~GT~I~ 304 (316)
|++++.+|+.++ |.|..|++|+..+.+. |.+++|.+ ++.+.+++.|+ .||+|.
T Consensus 239 I~~it~~e~~~~~~~~GgM~pKVeAA~~~v~~~g~~a~I~~---l~~~~~~l~G~-~GT~I~ 296 (297)
T PRK09411 239 IRHATPDELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIGA---LSRIEETLAGE-AGTCIS 296 (297)
T ss_pred CCCcCHHHHHHhccCCCCcHHHHHHHHHHHHhCCCeEEECC---hhHHHHHHCCC-CCeEEe
Confidence 999999998754 6788899999666654 67788864 67888999998 799985
No 85
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.59 E-value=1e-13 Score=129.16 Aligned_cols=207 Identities=26% Similarity=0.370 Sum_probs=141.9
Q ss_pred CeEEEEECccccccCCCC-CC--------------------CCCeEEEEChhHHHHHHHHcc------cCCCCccHHHHH
Q 021163 91 QRVLLKVSGEALAGDHTQ-NI--------------------DPKVAIVVGGGNIFRGASAAG------NSGLDRSSADYI 143 (316)
Q Consensus 91 k~iVIKiGGS~i~~~~~~-~~--------------------~~~vVIVhGGG~~a~G~~~l~------~~gl~~~~~d~v 143 (316)
+++||-+||.+|-..... .. ..++||.||-|+.. |.-.++ ..+.+..++|..
T Consensus 1 ~~iVvALGGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQV-G~l~lq~~aa~~~~~~p~~PLd~~ 79 (312)
T COG0549 1 KRIVVALGGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQV-GLLLLQNEAADSEKGVPAYPLDVL 79 (312)
T ss_pred CeEEEEecchhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCCchH-HHHHHHhhhhccccCCCCccHHHH
Confidence 579999999999877531 11 14789999999987 543322 123555566765
Q ss_pred HHH-----HHHHHHHHHHHHHHhCCCC----eE-EEecccccc------------c---------------------cc-
Q 021163 144 GML-----ATVMNAIFLQATMESIGIP----TR-VQTAFRMSE------------V---------------------AE- 179 (316)
Q Consensus 144 ~~l-----a~~lna~Lv~~~L~~~Gi~----a~-~l~~~~~~~------------~---------------------~~- 179 (316)
+++ +-.+... +...|..+|++ ++ -+...+..| + ..
T Consensus 80 ~AmsQG~IGy~l~qa-l~n~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG 158 (312)
T COG0549 80 VAMSQGMIGYMLQQA-LRNELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRG 158 (312)
T ss_pred hHhhhhHHHHHHHHH-HHHHHhhcCCCCceeEEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEEEecCCCC
Confidence 442 2222222 23456667853 22 122222111 0 00
Q ss_pred ---------h--HHH-HHHHHHHhCCCEEEEeCCCCCC-------------CCCchHHHHHHHHhcCCcEEEEecccCcc
Q 021163 180 ---------P--YIR-RRAVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGV 234 (316)
Q Consensus 180 ---------~--~i~-~~l~~lL~~g~IPVv~g~~g~~-------------~~~sD~iAa~LA~~L~Ad~LiilTDVdGV 234 (316)
| .++ +.++.++++|.++|..|+.|.| ++|-|..++.||.+++||.|+|+||||+|
T Consensus 159 ~RRVVpSP~P~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~V 238 (312)
T COG0549 159 YRRVVPSPKPVRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAV 238 (312)
T ss_pred eeEecCCCCCccchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchh
Confidence 0 122 3356789999999999864432 36789999999999999999999999999
Q ss_pred cccCCCCCCCCceeccccHHHHhhC--------CCCCchHHHHHHHHhC-CCcEEEEeCCCcchHHHHhcCCCcceEEec
Q 021163 235 YDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIGG 305 (316)
Q Consensus 235 yt~dP~~~p~aklI~~It~~e~~~l--------G~~v~k~~Aa~~a~~~-gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~ 305 (316)
|-+-- .|+.+.|++++.+|++++ |.|.+|++|+..-.++ |-+++|.+ .+++.++++|+ .||.|.+
T Consensus 239 y~n~g--kp~q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~Its---Le~~~~~l~g~-~GT~I~~ 312 (312)
T COG0549 239 YVNFG--KPNQQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITS---LENAEAALEGK-AGTVIVP 312 (312)
T ss_pred eecCC--CccchhhcccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECc---HHHHHHHhccC-CCcEecC
Confidence 98753 467899999999997653 7789999998755554 66788875 47788899997 7999864
No 86
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00054 Score=68.96 Aligned_cols=150 Identities=15% Similarity=0.211 Sum_probs=86.9
Q ss_pred CCCCeEEEEECccccccCCCCC----------CCCCeEEEEChhHHHHHHHHcc----c--CCCCccHHHHHHH----HH
Q 021163 88 YKWQRVLLKVSGEALAGDHTQN----------IDPKVAIVVGGGNIFRGASAAG----N--SGLDRSSADYIGM----LA 147 (316)
Q Consensus 88 ~~~k~iVIKiGGS~i~~~~~~~----------~~~~vVIVhGGG~~a~G~~~l~----~--~gl~~~~~d~v~~----la 147 (316)
...+++||+.+|.++....... ..-..|||||.|...++.-..+ . .+++.+..+.++. ..
T Consensus 92 ~~~q~fvV~~~g~~~~t~~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~~~RvTda~t~q~~~~~~~ 171 (520)
T KOG2436|consen 92 FRDQKFVVIKSGEAISTSLLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVDGYRVTDAHTLQAAKESVS 171 (520)
T ss_pred hcCceEEEEecccccccchHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHcCCCcccccceecccHHHHHHhhhcch
Confidence 4556666666666663332111 1125589999999998853322 0 1222222222222 11
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEeccccc--ccc---------chH--------HH-HHHHHHHhCCCEEEEeCC----CC
Q 021163 148 TVMNAIFLQATMESIGIPTRVQTAFRMS--EVA---------EPY--------IR-RRAVRHLEKGRVVIFAAG----TG 203 (316)
Q Consensus 148 ~~lna~Lv~~~L~~~Gi~a~~l~~~~~~--~~~---------~~~--------i~-~~l~~lL~~g~IPVv~g~----~g 203 (316)
..-|..++. .|+++|-.+++.+....- .+. +.| ++ +.+..+++.|.+|++..- .|
T Consensus 172 ~E~n~~lv~-nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla~TaSG 250 (520)
T KOG2436|consen 172 LEANLNLVI-NLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLAATASG 250 (520)
T ss_pred hhhhhHHHH-HHHHhhceeccccccccccceeecccccccccceeeeecccceechhhhhhhhhCCCchhehhhcccCcc
Confidence 223444664 788888887754332110 010 011 22 345678899999997752 23
Q ss_pred C-CCCCchHHHHHHHHhcCCcEEEEecccCcccccC
Q 021163 204 N-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN 238 (316)
Q Consensus 204 ~-~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt~d 238 (316)
+ ..+..|..|..+|..|+|+++++++|+.=+...+
T Consensus 251 qvlnvNa~~~a~elA~~L~~~kli~l~d~g~~l~e~ 286 (520)
T KOG2436|consen 251 QVLNVNADEVAGELALALGPDKLILLMDKGRILKEN 286 (520)
T ss_pred ceEEeeHHHHhhHHHhccCcceeEEecccccccccC
Confidence 3 2467899999999999999999999982233444
No 87
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=81.70 E-value=1.7 Score=38.16 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=38.6
Q ss_pred EEecccCcccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHH
Q 021163 226 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 292 (316)
Q Consensus 226 iilTDVdGVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~ 292 (316)
++.+|||||+|+ ++++-.-.-+|+.. .-+.|=.+++..++.||++.|+.|++...+.+
T Consensus 10 Lli~DVDGvLTD-------G~ly~~~~Gee~Ka--Fnv~DG~Gik~l~~~Gi~vAIITGr~s~ive~ 67 (170)
T COG1778 10 LLILDVDGVLTD-------GKLYYDENGEEIKA--FNVRDGHGIKLLLKSGIKVAIITGRDSPIVEK 67 (170)
T ss_pred EEEEeccceeec-------CeEEEcCCCceeee--eeccCcHHHHHHHHcCCeEEEEeCCCCHHHHH
Confidence 456899999984 45443332222221 22446677888899999999999988776653
No 88
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=70.52 E-value=4.4 Score=35.51 Aligned_cols=60 Identities=22% Similarity=0.291 Sum_probs=37.5
Q ss_pred EEecccCcccccCCCC--CCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcC
Q 021163 226 LKATNVDGVYDDNPRR--NPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQG 296 (316)
Q Consensus 226 iilTDVdGVyt~dP~~--~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G 296 (316)
.+..|+|||+|++ +. ++++.....++ .-|..++..+.+.|+++.|+++.....+...++.
T Consensus 9 ~~v~d~dGv~tdg-~~~~~~~g~~~~~~~----------~~D~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~ 70 (169)
T TIGR02726 9 LVILDVDGVMTDG-RIVINDEGIESRNFD----------IKDGMGVIVLQLCGIDVAIITSKKSGAVRHRAEE 70 (169)
T ss_pred EEEEeCceeeECC-eEEEcCCCcEEEEEe----------cchHHHHHHHHHCCCEEEEEECCCcHHHHHHHHH
Confidence 3567999999953 11 11112122221 2377788888888999888887776666666653
No 89
>PRK10976 putative hydrolase; Provisional
Probab=59.54 E-value=20 Score=32.80 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=34.4
Q ss_pred EEecccCcccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhc
Q 021163 226 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 295 (316)
Q Consensus 226 iilTDVdGVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~ 295 (316)
++++|+||=+-.+ + + +|+.. -.+|++.+.+.|+.+.|+.||.+..+..++.
T Consensus 4 li~~DlDGTLl~~-----~-~---~is~~----------~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~ 54 (266)
T PRK10976 4 VVASDLDGTLLSP-----D-H---TLSPY----------AKETLKLLTARGIHFVFATGRHHVDVGQIRD 54 (266)
T ss_pred EEEEeCCCCCcCC-----C-C---cCCHH----------HHHHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence 5789999944321 1 1 24332 2456778888999999999998887765543
No 90
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=59.28 E-value=24 Score=32.43 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=34.8
Q ss_pred EEecccCcccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhc
Q 021163 226 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 295 (316)
Q Consensus 226 iilTDVdGVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~ 295 (316)
++++|+||=+-.+ + + .|+.. -.+|++.+.+.|+.+.|+.||....+..++.
T Consensus 4 li~~DlDGTLl~~-----~-~---~i~~~----------~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~ 54 (272)
T PRK15126 4 LAAFDMDGTLLMP-----D-H---HLGEK----------TLSTLARLRERDITLTFATGRHVLEMQHILG 54 (272)
T ss_pred EEEEeCCCcCcCC-----C-C---cCCHH----------HHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
Confidence 5689999944321 1 1 24332 2457778888999999999998887776653
No 91
>PTZ00174 phosphomannomutase; Provisional
Probab=59.08 E-value=20 Score=32.87 Aligned_cols=51 Identities=12% Similarity=0.151 Sum_probs=36.4
Q ss_pred EEEecccCc-ccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhc
Q 021163 225 VLKATNVDG-VYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 295 (316)
Q Consensus 225 LiilTDVdG-Vyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~ 295 (316)
-++++|.|| +++.+ + +|+.. -.+|++.+.+.|+.++|+.||....+...+.
T Consensus 6 klia~DlDGTLL~~~-------~---~is~~----------~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 6 TILLFDVDGTLTKPR-------N---PITQE----------MKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred eEEEEECcCCCcCCC-------C---CCCHH----------HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 468999999 44322 1 23332 2356778889999999999999888877664
No 92
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=58.05 E-value=23 Score=31.39 Aligned_cols=28 Identities=25% Similarity=0.159 Sum_probs=21.3
Q ss_pred HHHHHHHhCCCcEEEEeCCCcchHHHHh
Q 021163 267 TAITLCQENNIPVVVFNLNQPGNIAKAI 294 (316)
Q Consensus 267 ~Aa~~a~~~gI~v~I~ng~~p~~i~~~l 294 (316)
+|++.+.+.|+++.|+.||.+..+..++
T Consensus 27 ~al~~l~~~G~~~~iaTGR~~~~~~~~~ 54 (230)
T PRK01158 27 EAIRKAEKLGIPVILATGNVLCFARAAA 54 (230)
T ss_pred HHHHHHHHCCCEEEEEcCCchHHHHHHH
Confidence 4566777889999999999887666543
No 93
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=56.87 E-value=29 Score=29.38 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=29.1
Q ss_pred EEecccCcccccCCC-CCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHh
Q 021163 226 LKATNVDGVYDDNPR-RNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 294 (316)
Q Consensus 226 iilTDVdGVyt~dP~-~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l 294 (316)
+++.|.||++.+++. ..++.+.+..+... +..+++.+.+.|+.+.|+.+........++
T Consensus 3 ~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~----------~~~~i~~Lk~~G~~i~IvTn~~~~~~~~~l 62 (154)
T TIGR01670 3 LLILDVDGVLTDGKIYYTNNGEEIKAFNVR----------DGYGIRCALKSGIEVAIITGRKAKLVEDRC 62 (154)
T ss_pred EEEEeCceeEEcCeEEECCCCcEEEEEech----------hHHHHHHHHHCCCEEEEEECCCCHHHHHHH
Confidence 467899998875422 22233444444221 112444445555555555554444333333
No 94
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=54.92 E-value=29 Score=31.57 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=34.0
Q ss_pred EEecccCcccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHh
Q 021163 226 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 294 (316)
Q Consensus 226 iilTDVdGVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l 294 (316)
++++|+||=+-.+ + + +|+.+ -.+|++.+.+.|+.+.|+.||.+..+..++
T Consensus 5 li~~DlDGTLl~~-----~-~---~i~~~----------~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~ 54 (272)
T PRK10530 5 VIALDLDGTLLTP-----K-K---TILPE----------SLEALARAREAGYKVIIVTGRHHVAIHPFY 54 (272)
T ss_pred EEEEeCCCceECC-----C-C---ccCHH----------HHHHHHHHHHCCCEEEEEcCCChHHHHHHH
Confidence 5789999944321 1 1 23332 246777888899999999999887766554
No 95
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=53.37 E-value=28 Score=31.84 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=33.9
Q ss_pred EEecccCc-ccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHh
Q 021163 226 LKATNVDG-VYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 294 (316)
Q Consensus 226 iilTDVdG-Vyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l 294 (316)
++++|.|| +++.+ + +|+.. -.+|++.+.+.|+.++|+.||....+..++
T Consensus 5 li~~DlDGTLl~~~-------~---~i~~~----------~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~ 54 (270)
T PRK10513 5 LIAIDMDGTLLLPD-------H---TISPA----------VKQAIAAARAKGVNVVLTTGRPYAGVHRYL 54 (270)
T ss_pred EEEEecCCcCcCCC-------C---ccCHH----------HHHHHHHHHHCCCEEEEecCCChHHHHHHH
Confidence 67899999 44321 1 23332 246777888899999999999888766554
No 96
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=51.86 E-value=32 Score=30.38 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=33.2
Q ss_pred EEecccCcccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHh
Q 021163 226 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 294 (316)
Q Consensus 226 iilTDVdGVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l 294 (316)
++++|.||=+-.+ +. +++.. -.++++.+.+.|+++.|+.|+.+..+..++
T Consensus 3 ~v~~DlDGTLl~~-----~~----~i~~~----------~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~ 52 (215)
T TIGR01487 3 LVAIDIDGTLTEP-----NR----MISER----------AIEAIRKAEKKGIPVSLVTGNTVPFARALA 52 (215)
T ss_pred EEEEecCCCcCCC-----Cc----ccCHH----------HHHHHHHHHHCCCEEEEEcCCcchhHHHHH
Confidence 5688999955421 11 23322 245667778889999999999887776553
No 97
>PLN02887 hydrolase family protein
Probab=47.66 E-value=44 Score=35.15 Aligned_cols=69 Identities=9% Similarity=0.114 Sum_probs=45.6
Q ss_pred CCchHHHHHHHHhcCCcEEEEecccCc-ccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCC
Q 021163 207 FTTDTAAALRCAEINAEVVLKATNVDG-VYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLN 285 (316)
Q Consensus 207 ~~sD~iAa~LA~~L~Ad~LiilTDVdG-Vyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~ 285 (316)
.++|.=-+-.-...+...=++++|.|| +++.+ + +|+.. -.+|++.+.+.|+.++|+.|+
T Consensus 291 ~~~~~~~~~~~~~~~~~iKLIa~DLDGTLLn~d-------~---~Is~~----------t~eAI~kl~ekGi~~vIATGR 350 (580)
T PLN02887 291 KSDDRKKEGSLRFYKPKFSYIFCDMDGTLLNSK-------S---QISET----------NAKALKEALSRGVKVVIATGK 350 (580)
T ss_pred cccchhhhcchhhhccCccEEEEeCCCCCCCCC-------C---ccCHH----------HHHHHHHHHHCCCeEEEEcCC
Confidence 344544444445556665678899999 44422 1 34433 346788889999999999999
Q ss_pred CcchHHHHhc
Q 021163 286 QPGNIAKAIQ 295 (316)
Q Consensus 286 ~p~~i~~~l~ 295 (316)
....+..++.
T Consensus 351 ~~~~i~~~l~ 360 (580)
T PLN02887 351 ARPAVIDILK 360 (580)
T ss_pred CHHHHHHHHH
Confidence 8877765543
No 98
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=39.51 E-value=32 Score=30.08 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=29.1
Q ss_pred EEEecccCcccccCC-CCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHh
Q 021163 225 VLKATNVDGVYDDNP-RRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 294 (316)
Q Consensus 225 LiilTDVdGVyt~dP-~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l 294 (316)
=.+++|+||+++++- ...++...+...+. -+-.+++.+.+.|+++.|+.++....+..++
T Consensus 22 kli~~D~Dgtl~~~~i~~~~~~~~~~~~~~----------~d~~~i~~L~~~Gi~v~I~T~~~~~~v~~~l 82 (183)
T PRK09484 22 RLLICDVDGVFSDGLIYMGNNGEELKAFNV----------RDGYGIRCLLTSGIEVAIITGRKSKLVEDRM 82 (183)
T ss_pred eEEEEcCCeeeecCEEEEcCCCCEEEEEec----------cchHHHHHHHHCCCEEEEEeCCCcHHHHHHH
Confidence 467889999998530 00011222222222 1223444555566666666555444444443
No 99
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=37.84 E-value=59 Score=30.00 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=36.3
Q ss_pred cEEEEecccCcccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhc
Q 021163 223 EVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 295 (316)
Q Consensus 223 d~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~ 295 (316)
+..++++|+||=+-.+ + + .++.. -.+|++.+.+.|++++|+.||....+..+++
T Consensus 6 ~~~lI~~DlDGTLL~~-~-----~---~i~~~----------~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~ 59 (271)
T PRK03669 6 DPLLIFTDLDGTLLDS-H-----T---YDWQP----------AAPWLTRLREAQVPVILCSSKTAAEMLPLQQ 59 (271)
T ss_pred CCeEEEEeCccCCcCC-C-----C---cCcHH----------HHHHHHHHHHcCCeEEEEcCCCHHHHHHHHH
Confidence 3567899999954422 1 1 12211 2356777888999999999998887766543
No 100
>PLN03017 trehalose-phosphatase
Probab=30.11 E-value=1.5e+02 Score=29.37 Aligned_cols=63 Identities=10% Similarity=0.152 Sum_probs=39.9
Q ss_pred HHHHHhcCCcEEEEecccCcccc---cCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchH
Q 021163 214 ALRCAEINAEVVLKATNVDGVYD---DNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNI 290 (316)
Q Consensus 214 a~LA~~L~Ad~LiilTDVdGVyt---~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i 290 (316)
..++...+.++++++.|.||=+. ++|.. + .++.+ -.++++.+. .++++.|++|+....+
T Consensus 101 ~~~~~~~~~k~~llflD~DGTL~Piv~~p~~---a----~i~~~----------~~~aL~~La-~~~~vaIvSGR~~~~l 162 (366)
T PLN03017 101 EQIMEASRGKQIVMFLDYDGTLSPIVDDPDK---A----FMSSK----------MRRTVKKLA-KCFPTAIVTGRCIDKV 162 (366)
T ss_pred HHHHHHhcCCCeEEEEecCCcCcCCcCCccc---c----cCCHH----------HHHHHHHHh-cCCcEEEEeCCCHHHH
Confidence 34555666688999999999775 33321 1 12211 112334434 6788999999998888
Q ss_pred HHHh
Q 021163 291 AKAI 294 (316)
Q Consensus 291 ~~~l 294 (316)
.+++
T Consensus 163 ~~~~ 166 (366)
T PLN03017 163 YNFV 166 (366)
T ss_pred HHhh
Confidence 7764
No 101
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=29.74 E-value=3.2e+02 Score=22.54 Aligned_cols=67 Identities=22% Similarity=0.212 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCCeEEEeccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCCCCchHHHHHHHHhcCC
Q 021163 151 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINA 222 (316)
Q Consensus 151 na~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~~g~~~~~sD~iAa~LA~~L~A 222 (316)
|..++++.|+++|+.+....... |- ...+.+.+...++...+.|+.|+. .....|.+...++...+-
T Consensus 18 n~~~l~~~l~~~G~~v~~~~~v~--Dd-~~~i~~~l~~~~~~~D~VittGG~--g~~~~D~t~~a~~~~~~~ 84 (144)
T PF00994_consen 18 NGPFLAALLEELGIEVIRYGIVP--DD-PDAIKEALRRALDRADLVITTGGT--GPGPDDVTPEALAEAGGR 84 (144)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEE--SS-HHHHHHHHHHHHHTTSEEEEESSS--SSSTTCHHHHHHHHHSSE
T ss_pred HHHHHHHHHHHcCCeeeEEEEEC--CC-HHHHHHHHHhhhccCCEEEEcCCc--CcccCCcccHHHHHhcCc
Confidence 44556678889999775322211 10 122334456677888888888763 345679999999888864
No 102
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=28.58 E-value=2e+02 Score=30.87 Aligned_cols=73 Identities=11% Similarity=0.032 Sum_probs=47.3
Q ss_pred hHHHHHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHh-CCCcEEEEeCCCcc
Q 021163 210 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQE-NNIPVVVFNLNQPG 288 (316)
Q Consensus 210 D~iAa~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~-~gI~v~I~ng~~p~ 288 (316)
+.....+.+.-.+++-++++|.||-+... ...|... .++.+ =.++++.+.+ .|+.++|++|+...
T Consensus 478 ~~~~~~~~~y~~~~~rLi~~D~DGTL~~~-~~~~~~~---~~~~~----------~~~~L~~L~~d~g~~V~ivSGR~~~ 543 (726)
T PRK14501 478 AAAEEIIARYRAASRRLLLLDYDGTLVPF-APDPELA---VPDKE----------LRDLLRRLAADPNTDVAIISGRDRD 543 (726)
T ss_pred cCHHHHHHHHHhccceEEEEecCccccCC-CCCcccC---CCCHH----------HHHHHHHHHcCCCCeEEEEeCCCHH
Confidence 34566677777888899999999988642 1111111 11111 1234555556 49999999999999
Q ss_pred hHHHHhcC
Q 021163 289 NIAKAIQG 296 (316)
Q Consensus 289 ~i~~~l~G 296 (316)
.+.+.+..
T Consensus 544 ~l~~~~~~ 551 (726)
T PRK14501 544 TLERWFGD 551 (726)
T ss_pred HHHHHhCC
Confidence 99887753
No 103
>TIGR03720 exospor_lead exosporium leader peptide. This domain is found as a leader peptide in at least two proteins targeted to the exosporium, a structure that occurs as the outermost layer of Bacillus anthracis, B. cereus, and B. thuringiensis spores. The exosporium consists of a basal layer and a nap of hair-like filaments. BclA, the major protein of the nap filaments, is targeted there by this leader peptide.
Probab=27.70 E-value=34 Score=20.86 Aligned_cols=13 Identities=23% Similarity=0.667 Sum_probs=10.7
Q ss_pred CCCCccccCCccc
Q 021163 64 RQPQMSSMSPFGV 76 (316)
Q Consensus 64 ~~~~~~~~~~~~~ 76 (316)
-.|++|+||||.+
T Consensus 6 IGPTlPpippft~ 18 (26)
T TIGR03720 6 IGPTLPPIPPFTL 18 (26)
T ss_pred cCCCCCCCCCccc
Confidence 3589999999965
No 104
>PLN02423 phosphomannomutase
Probab=27.43 E-value=1.3e+02 Score=27.53 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=33.4
Q ss_pred EEEEecccCcccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhc
Q 021163 224 VVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 295 (316)
Q Consensus 224 ~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~ 295 (316)
++++++|+||=+-.+ + + +++.+ -.++++.+.+. +.++++.|+....+.+.+.
T Consensus 7 ~~i~~~D~DGTLl~~-----~-~---~i~~~----------~~~ai~~l~~~-i~fviaTGR~~~~~~~~~~ 58 (245)
T PLN02423 7 GVIALFDVDGTLTAP-----R-K---EATPE----------MLEFMKELRKV-VTVGVVGGSDLSKISEQLG 58 (245)
T ss_pred ceEEEEeccCCCcCC-----C-C---cCCHH----------HHHHHHHHHhC-CEEEEECCcCHHHHHHHhc
Confidence 478889999954322 1 1 23322 13456666665 9999999998777766554
No 105
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=26.79 E-value=95 Score=29.23 Aligned_cols=45 Identities=27% Similarity=0.318 Sum_probs=32.8
Q ss_pred chHHHHHHHHhC-CCcEEEEeCCCcchHHHHhc---CCCcceEEecCCC
Q 021163 264 MDMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQ---GERVGTLIGGTWN 308 (316)
Q Consensus 264 ~k~~Aa~~a~~~-gI~v~I~ng~~p~~i~~~l~---G~~~GT~I~~~~~ 308 (316)
.++.-++.+++. ++|+.|-+|-.++++.+++. |-.+||+|..++.
T Consensus 187 ~~~~~l~~vr~~~~~PVlvGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G~ 235 (254)
T PF03437_consen 187 PDPEKLKRVREAVPVPVLVGSGVTPENIAEYLSYADGAIVGSYFKKDGK 235 (254)
T ss_pred CCHHHHHHHHhcCCCCEEEecCCCHHHHHHHHHhCCEEEEeeeeeeCCE
Confidence 355555554442 48999999999999998875 3347999986554
No 106
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=26.16 E-value=1.3e+02 Score=27.93 Aligned_cols=58 Identities=9% Similarity=0.115 Sum_probs=36.3
Q ss_pred EEEEecccCcccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHh-CCCcEEEEeCCCcchHHHHhc
Q 021163 224 VVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQE-NNIPVVVFNLNQPGNIAKAIQ 295 (316)
Q Consensus 224 ~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~-~gI~v~I~ng~~p~~i~~~l~ 295 (316)
.+++++|.||=+.. ....|+... ++.. -.++++.+.+ .|+.++|++|+....+.+++.
T Consensus 14 ~~li~~D~DGTLl~-~~~~p~~~~---i~~~----------~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~ 72 (266)
T PRK10187 14 NYAWFFDLDGTLAE-IKPHPDQVV---VPDN----------ILQGLQLLATANDGALALISGRSMVELDALAK 72 (266)
T ss_pred CEEEEEecCCCCCC-CCCCccccc---CCHH----------HHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcC
Confidence 47788999996653 112222222 2211 1234555555 689999999999998887764
No 107
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=24.86 E-value=4.4e+02 Score=24.87 Aligned_cols=69 Identities=22% Similarity=0.251 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhCCCCeEEEeccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCCCCchHHHHHHHHhcCCcE
Q 021163 151 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEV 224 (316)
Q Consensus 151 na~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~~g~~~~~sD~iAa~LA~~L~Ad~ 224 (316)
|+.-+++.|.++|++...+.-+ +|-. ..+-+.+..+++.-.+.|++|+.| --.-|.++-.+|++++-+.
T Consensus 22 Na~~la~~L~~~G~~v~~~~~V--gD~~-~~I~~~l~~a~~r~D~vI~tGGLG--PT~DDiT~e~vAka~g~~l 90 (255)
T COG1058 22 NAAFLADELTELGVDLARITTV--GDNP-DRIVEALREASERADVVITTGGLG--PTHDDLTAEAVAKALGRPL 90 (255)
T ss_pred hHHHHHHHHHhcCceEEEEEec--CCCH-HHHHHHHHHHHhCCCEEEECCCcC--CCccHhHHHHHHHHhCCCc
Confidence 4444667888999998754322 1111 123244566777777888887643 2346899999999999663
No 108
>PLN02151 trehalose-phosphatase
Probab=24.65 E-value=1.4e+02 Score=29.50 Aligned_cols=67 Identities=6% Similarity=0.118 Sum_probs=39.5
Q ss_pred HHHHHhcCCcEEEEecccCcccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHH
Q 021163 214 ALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKA 293 (316)
Q Consensus 214 a~LA~~L~Ad~LiilTDVdGVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~ 293 (316)
-.++...++++++++.|.||=+..-- .+|+.-. ++.+ -.++++.+. .+.++.|++|+..+.+.++
T Consensus 88 ~~~~~~~~~~~~ll~lDyDGTL~PIv-~~P~~A~---~~~~----------~~~aL~~La-~~~~vaIvSGR~~~~l~~~ 152 (354)
T PLN02151 88 EEILHKSEGKQIVMFLDYDGTLSPIV-DDPDRAF---MSKK----------MRNTVRKLA-KCFPTAIVSGRCREKVSSF 152 (354)
T ss_pred HHHHHhhcCCceEEEEecCccCCCCC-CCccccc---CCHH----------HHHHHHHHh-cCCCEEEEECCCHHHHHHH
Confidence 34555577788999999999765100 0111111 1111 122333333 4568999999999988887
Q ss_pred hc
Q 021163 294 IQ 295 (316)
Q Consensus 294 l~ 295 (316)
+.
T Consensus 153 ~~ 154 (354)
T PLN02151 153 VK 154 (354)
T ss_pred cC
Confidence 64
No 109
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=24.11 E-value=66 Score=22.63 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=20.0
Q ss_pred HHHHHhcCCcEEEEecccCc--ccccCCCC
Q 021163 214 ALRCAEINAEVVLKATNVDG--VYDDNPRR 241 (316)
Q Consensus 214 a~LA~~L~Ad~LiilTDVdG--Vyt~dP~~ 241 (316)
.+++...-+..+.-|+|.+| +|++.|..
T Consensus 4 l~l~~~a~aa~vYk~~D~~G~v~ysd~P~~ 33 (60)
T PF13511_consen 4 LLLAASAAAAEVYKWVDENGVVHYSDTPPP 33 (60)
T ss_pred HHHhHHHhhccEEEEECCCCCEEECccCCC
Confidence 34444445567999999999 58887753
No 110
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=23.01 E-value=1.5e+02 Score=26.72 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=23.5
Q ss_pred HHHHHHHHhCCCcEEEEeCCCcchHHHHhc
Q 021163 266 MTAITLCQENNIPVVVFNLNQPGNIAKAIQ 295 (316)
Q Consensus 266 ~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~ 295 (316)
.++++.+.+.|+.+.|+.|+....+..++.
T Consensus 22 ~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~ 51 (256)
T TIGR00099 22 KEALAKLREKGIKVVLATGRPYKEVKNILK 51 (256)
T ss_pred HHHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Confidence 456777788899999999998887776553
No 111
>PRK03673 hypothetical protein; Provisional
Probab=21.40 E-value=5.1e+02 Score=25.93 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhCCCCeEEEeccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCCCCchHHHHHHHHhcCCc
Q 021163 151 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 223 (316)
Q Consensus 151 na~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~~g~~~~~sD~iAa~LA~~L~Ad 223 (316)
|+..+++.|.+.|+.+..+.-.. |-. ..+...+...++...+.|+.|+. .-..-|.+...+|++++-+
T Consensus 22 N~~~la~~L~~~G~~v~~~~~v~--D~~-~~i~~~l~~a~~~~DlVI~tGGl--Gpt~dD~t~~avA~a~g~~ 89 (396)
T PRK03673 22 NAAWLADFFFHQGLPLSRRNTVG--DNL-DALVAILRERSQHADVLIVNGGL--GPTSDDLSALAAATAAGEG 89 (396)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcC--CCH-HHHHHHHHHHhccCCEEEEcCCC--CCCCcccHHHHHHHHcCCC
Confidence 55556678899999876433221 111 12334455667777888888763 3455788888888888865
No 112
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=21.18 E-value=1.3e+02 Score=23.63 Aligned_cols=27 Identities=11% Similarity=0.028 Sum_probs=17.4
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHhcCCcEE
Q 021163 195 VVIFAAGTGNPFFTTDTAAALRCAEINAEVV 225 (316)
Q Consensus 195 IPVv~g~~g~~~~~sD~iAa~LA~~L~Ad~L 225 (316)
||++.|. .++.+.+|..||..|++.-+
T Consensus 52 IplL~GH----~GGan~lA~~iA~~lga~~V 78 (84)
T PF11760_consen 52 IPLLGGH----RGGANELARQIAELLGAQPV 78 (84)
T ss_dssp EEEE-TT----TT-HHHHHHHHHHHTT-EE-
T ss_pred EEeccCC----cchHHHHHHHHHHHhCCEEE
Confidence 4555543 35589999999999999744
No 113
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=21.01 E-value=5.5e+02 Score=22.23 Aligned_cols=68 Identities=21% Similarity=0.188 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCCeEEEeccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCCCCchHHHHHHHHhcCCc
Q 021163 151 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 223 (316)
Q Consensus 151 na~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~~g~~~~~sD~iAa~LA~~L~Ad 223 (316)
|...+++.|.+.|+.+....... |-. ..+.+.+..+++...+.|+.|+ .....-|.+...++..++-+
T Consensus 20 n~~~l~~~L~~~G~~v~~~~~v~--Dd~-~~I~~~l~~~~~~~dlVIttGG--~G~t~~D~t~ea~~~~~~~~ 87 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVVG--DDE-DRIAEALRRASERADLVITTGG--LGPTHDDLTREAVAKAFGRP 87 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEEeC--CCH-HHHHHHHHHHHhCCCEEEECCC--CCCCCCChHHHHHHHHhCCC
Confidence 44456678888999876422211 111 1233445556666678887765 34456799999999999865
Done!