Query 021164
Match_columns 316
No_of_seqs 203 out of 1387
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 08:05:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0048 Transcription factor, 100.0 3.2E-34 6.9E-39 265.2 13.4 111 19-129 5-115 (238)
2 PLN03212 Transcription repress 100.0 2.2E-34 4.9E-39 266.1 10.8 121 17-137 19-139 (249)
3 PLN03091 hypothetical protein; 100.0 5E-33 1.1E-37 273.6 11.9 117 17-133 8-124 (459)
4 KOG0049 Transcription factor, 99.8 1.7E-19 3.6E-24 183.8 7.8 111 16-127 353-464 (939)
5 KOG0049 Transcription factor, 99.7 9.1E-18 2E-22 171.3 7.4 112 15-126 245-411 (939)
6 PF13921 Myb_DNA-bind_6: Myb-l 99.6 1.4E-16 2.9E-21 117.2 3.2 60 26-87 1-60 (60)
7 COG5147 REB1 Myb superfamily p 99.6 2.9E-15 6.3E-20 151.8 6.3 109 17-126 14-122 (512)
8 KOG0050 mRNA splicing protein 99.5 8.3E-15 1.8E-19 146.9 3.6 107 21-129 5-111 (617)
9 PF00249 Myb_DNA-binding: Myb- 99.4 5.5E-14 1.2E-18 99.7 0.8 48 23-70 1-48 (48)
10 PF00249 Myb_DNA-binding: Myb- 99.4 4.7E-13 1E-17 94.9 4.8 46 76-121 1-48 (48)
11 KOG0051 RNA polymerase I termi 99.4 4.7E-13 1E-17 137.4 5.2 102 22-126 383-512 (607)
12 PF13921 Myb_DNA-bind_6: Myb-l 99.2 8.5E-12 1.8E-16 91.7 4.8 45 79-123 1-45 (60)
13 smart00717 SANT SANT SWI3, AD 99.2 1.5E-11 3.3E-16 84.3 5.5 47 76-122 1-48 (49)
14 PLN03212 Transcription repress 99.1 7.7E-11 1.7E-15 110.0 6.0 68 52-127 9-78 (249)
15 cd00167 SANT 'SWI3, ADA2, N-Co 99.1 1.5E-10 3.3E-15 78.2 5.5 43 78-120 1-44 (45)
16 smart00717 SANT SANT SWI3, AD 99.1 5.3E-11 1.2E-15 81.5 2.0 48 23-71 1-48 (49)
17 PLN03091 hypothetical protein; 98.9 6.8E-10 1.5E-14 110.7 5.0 56 71-126 9-66 (459)
18 KOG0048 Transcription factor, 98.9 7.5E-10 1.6E-14 102.8 4.6 57 72-128 5-63 (238)
19 cd00167 SANT 'SWI3, ADA2, N-Co 98.9 3.9E-10 8.3E-15 76.2 1.7 45 25-70 1-45 (45)
20 KOG0051 RNA polymerase I termi 98.9 2.5E-09 5.4E-14 110.3 6.0 105 20-126 305-433 (607)
21 COG5147 REB1 Myb superfamily p 98.2 6.9E-07 1.5E-11 91.4 2.2 106 14-122 63-168 (512)
22 TIGR01557 myb_SHAQKYF myb-like 97.8 8.2E-06 1.8E-10 60.7 2.0 49 22-70 2-54 (57)
23 TIGR01557 myb_SHAQKYF myb-like 97.7 9.6E-05 2.1E-09 54.9 5.6 46 76-121 3-54 (57)
24 KOG0457 Histone acetyltransfer 97.6 2.1E-05 4.5E-10 78.8 1.5 51 19-70 68-118 (438)
25 PF13325 MCRS_N: N-terminal re 97.6 0.00015 3.2E-09 66.5 6.7 100 25-126 1-131 (199)
26 KOG0457 Histone acetyltransfer 97.4 0.0002 4.3E-09 71.8 5.9 49 73-121 69-118 (438)
27 PF13837 Myb_DNA-bind_4: Myb/S 97.2 0.00031 6.7E-09 54.7 3.7 53 76-128 1-71 (90)
28 TIGR02894 DNA_bind_RsfA transc 97.2 0.00047 1E-08 61.2 4.4 51 75-126 3-60 (161)
29 PF08914 Myb_DNA-bind_2: Rap1 97.1 0.00054 1.2E-08 52.2 3.8 50 76-125 2-61 (65)
30 KOG1279 Chromatin remodeling f 97.1 0.00069 1.5E-08 69.8 5.1 48 74-121 251-298 (506)
31 KOG0050 mRNA splicing protein 97.0 0.00044 9.5E-09 70.8 3.4 54 74-127 5-59 (617)
32 COG5259 RSC8 RSC chromatin rem 97.0 0.00062 1.3E-08 69.0 4.3 45 76-120 279-323 (531)
33 COG5259 RSC8 RSC chromatin rem 96.8 0.00038 8.3E-09 70.5 1.1 46 22-69 278-323 (531)
34 KOG1279 Chromatin remodeling f 96.5 0.0011 2.5E-08 68.2 1.7 47 21-69 251-297 (506)
35 PF13873 Myb_DNA-bind_5: Myb/S 96.1 0.01 2.2E-07 45.5 4.7 52 76-127 2-75 (78)
36 PRK13923 putative spore coat p 95.9 0.0084 1.8E-07 53.9 3.8 51 74-125 3-60 (170)
37 PF08914 Myb_DNA-bind_2: Rap1 95.9 0.0026 5.5E-08 48.6 0.4 52 23-74 2-61 (65)
38 PF13837 Myb_DNA-bind_4: Myb/S 95.9 0.0022 4.8E-08 49.9 0.0 47 24-70 2-64 (90)
39 PF13873 Myb_DNA-bind_5: Myb/S 95.4 0.0041 8.8E-08 47.7 -0.1 49 22-70 1-69 (78)
40 COG5114 Histone acetyltransfer 95.3 0.0052 1.1E-07 60.1 0.1 50 21-71 61-110 (432)
41 TIGR02894 DNA_bind_RsfA transc 95.2 0.006 1.3E-07 54.2 0.5 49 21-71 2-56 (161)
42 KOG2656 DNA methyltransferase 94.8 0.03 6.5E-07 56.0 4.1 86 45-131 75-191 (445)
43 COG5114 Histone acetyltransfer 94.8 0.04 8.6E-07 54.1 4.8 49 74-122 61-110 (432)
44 KOG4282 Transcription factor G 94.1 0.12 2.6E-06 50.4 6.4 56 76-131 54-123 (345)
45 PLN03142 Probable chromatin-re 94.0 0.09 2E-06 58.7 6.0 98 26-124 827-987 (1033)
46 PRK13923 putative spore coat p 93.9 0.014 3E-07 52.4 -0.4 50 20-71 2-57 (170)
47 PF12776 Myb_DNA-bind_3: Myb/S 92.4 0.32 6.9E-06 38.2 5.3 47 78-124 1-65 (96)
48 COG5118 BDP1 Transcription ini 91.8 0.24 5.2E-06 49.7 4.8 47 77-123 366-412 (507)
49 PF09111 SLIDE: SLIDE; InterP 88.7 0.62 1.3E-05 39.5 4.1 54 73-126 46-115 (118)
50 PF08281 Sigma70_r4_2: Sigma-7 87.5 1.2 2.7E-05 31.4 4.5 42 81-123 12-53 (54)
51 KOG1194 Predicted DNA-binding 87.0 1.7 3.7E-05 44.7 6.6 48 76-123 187-234 (534)
52 COG5118 BDP1 Transcription ini 83.8 0.67 1.5E-05 46.6 2.1 66 19-86 361-434 (507)
53 smart00595 MADF subfamily of S 78.2 2.7 5.8E-05 32.5 3.4 27 97-124 29-55 (89)
54 PF09111 SLIDE: SLIDE; InterP 76.0 1.9 4.2E-05 36.5 2.1 34 20-53 46-82 (118)
55 KOG4282 Transcription factor G 73.4 2.9 6.3E-05 40.8 2.9 47 24-70 55-113 (345)
56 KOG4468 Polycomb-group transcr 72.6 6.1 0.00013 42.1 5.1 53 75-127 87-149 (782)
57 KOG4167 Predicted DNA-binding 72.3 11 0.00023 41.2 6.9 44 23-68 619-662 (907)
58 PF13404 HTH_AsnC-type: AsnC-t 71.5 7.5 0.00016 26.9 3.9 38 82-120 3-41 (42)
59 PRK11179 DNA-binding transcrip 71.2 6.6 0.00014 33.8 4.4 46 81-127 8-54 (153)
60 PF04545 Sigma70_r4: Sigma-70, 70.5 10 0.00022 26.4 4.4 42 82-124 7-48 (50)
61 PF04504 DUF573: Protein of un 69.6 12 0.00026 30.5 5.3 53 76-128 4-69 (98)
62 PF11626 Rap1_C: TRF2-interact 68.3 4.8 0.0001 31.9 2.7 24 19-42 43-74 (87)
63 PF07750 GcrA: GcrA cell cycle 67.3 5.6 0.00012 35.4 3.2 41 78-119 2-42 (162)
64 TIGR02985 Sig70_bacteroi1 RNA 65.4 15 0.00032 30.4 5.2 41 83-124 117-157 (161)
65 PRK11169 leucine-responsive tr 64.2 9.2 0.0002 33.4 3.9 45 81-126 13-58 (164)
66 PF12776 Myb_DNA-bind_3: Myb/S 63.6 3.7 8.1E-05 32.0 1.2 44 25-68 1-60 (96)
67 PF11035 SnAPC_2_like: Small n 63.5 23 0.00049 35.2 6.7 50 74-123 19-72 (344)
68 KOG2009 Transcription initiati 58.7 11 0.00025 39.9 4.0 51 74-124 407-457 (584)
69 PF13404 HTH_AsnC-type: AsnC-t 57.7 3.6 7.8E-05 28.5 0.1 38 29-68 3-40 (42)
70 KOG4167 Predicted DNA-binding 57.4 17 0.00037 39.7 5.1 43 76-118 619-661 (907)
71 PF13325 MCRS_N: N-terminal re 57.3 22 0.00048 32.9 5.2 44 78-122 1-47 (199)
72 cd08319 Death_RAIDD Death doma 55.9 15 0.00032 29.3 3.4 29 84-113 2-30 (83)
73 PF11626 Rap1_C: TRF2-interact 55.1 5.2 0.00011 31.7 0.6 17 72-88 43-59 (87)
74 TIGR02937 sigma70-ECF RNA poly 53.0 29 0.00062 27.7 4.8 38 86-124 117-154 (158)
75 cd08803 Death_ank3 Death domai 50.6 22 0.00048 28.2 3.6 29 84-113 4-32 (84)
76 PRK09652 RNA polymerase sigma 50.0 34 0.00073 28.9 5.0 38 87-125 136-173 (182)
77 smart00344 HTH_ASNC helix_turn 49.7 33 0.00072 27.2 4.6 44 82-126 3-47 (108)
78 PF01388 ARID: ARID/BRIGHT DNA 49.7 37 0.0008 26.4 4.8 39 85-123 39-90 (92)
79 PRK11179 DNA-binding transcrip 48.6 7.5 0.00016 33.5 0.7 43 29-73 9-51 (153)
80 cd08317 Death_ank Death domain 47.8 19 0.00042 28.1 2.8 29 84-113 4-32 (84)
81 PF10545 MADF_DNA_bdg: Alcohol 46.5 20 0.00044 26.7 2.7 28 97-124 28-56 (85)
82 cd06171 Sigma70_r4 Sigma70, re 46.1 52 0.0011 21.5 4.5 38 83-121 14-51 (55)
83 PRK12523 RNA polymerase sigma 45.6 53 0.0012 28.1 5.6 40 88-128 128-167 (172)
84 smart00501 BRIGHT BRIGHT, ARID 45.6 5.9 0.00013 31.4 -0.4 43 30-72 33-86 (93)
85 smart00501 BRIGHT BRIGHT, ARID 45.5 44 0.00095 26.3 4.6 40 85-124 35-87 (93)
86 KOG0384 Chromodomain-helicase 44.2 25 0.00054 40.6 3.9 76 22-104 1132-1208(1373)
87 PRK11924 RNA polymerase sigma 43.4 47 0.001 27.9 4.8 31 93-124 139-169 (179)
88 PRK09643 RNA polymerase sigma 43.2 49 0.0011 29.1 5.1 35 89-124 144-178 (192)
89 KOG2656 DNA methyltransferase 43.0 15 0.00032 37.4 1.9 48 21-69 128-180 (445)
90 PRK04217 hypothetical protein; 42.9 50 0.0011 27.7 4.7 46 78-125 42-87 (110)
91 PF11427 HTH_Tnp_Tc3_1: Tc3 tr 42.5 44 0.00095 24.3 3.8 36 81-117 6-41 (50)
92 PF07638 Sigma70_ECF: ECF sigm 42.3 50 0.0011 29.1 5.0 40 83-123 139-178 (185)
93 PRK11169 leucine-responsive tr 42.0 8.5 0.00019 33.6 0.0 45 28-74 13-57 (164)
94 cd08804 Death_ank2 Death domai 41.8 31 0.00067 27.2 3.2 31 84-115 4-34 (84)
95 KOG4329 DNA-binding protein [G 41.5 46 0.00099 33.8 4.9 45 77-121 278-323 (445)
96 PRK12512 RNA polymerase sigma 41.2 64 0.0014 27.8 5.4 33 94-127 146-178 (184)
97 cd08318 Death_NMPP84 Death dom 40.9 33 0.00072 27.0 3.3 27 87-114 10-36 (86)
98 PF09420 Nop16: Ribosome bioge 40.1 61 0.0013 28.5 5.1 46 75-120 113-162 (164)
99 PRK09641 RNA polymerase sigma 39.8 58 0.0013 27.9 4.9 30 94-124 151-180 (187)
100 PF07750 GcrA: GcrA cell cycle 38.9 18 0.00039 32.1 1.6 38 25-65 2-39 (162)
101 PRK09047 RNA polymerase factor 36.9 81 0.0018 26.3 5.2 30 94-124 121-150 (161)
102 TIGR02939 RpoE_Sigma70 RNA pol 36.8 54 0.0012 28.1 4.2 32 94-126 153-184 (190)
103 cd08311 Death_p75NR Death doma 36.6 31 0.00068 27.0 2.4 33 81-115 2-34 (77)
104 PRK12531 RNA polymerase sigma 36.4 72 0.0016 28.0 5.0 32 94-126 156-187 (194)
105 PF11035 SnAPC_2_like: Small n 36.2 91 0.002 31.1 6.0 86 23-122 21-127 (344)
106 PRK12529 RNA polymerase sigma 36.1 92 0.002 26.9 5.6 34 93-127 141-174 (178)
107 TIGR02954 Sig70_famx3 RNA poly 35.8 74 0.0016 27.0 4.9 31 94-125 134-164 (169)
108 cd08777 Death_RIP1 Death Domai 35.0 41 0.00088 26.8 2.9 30 85-115 3-32 (86)
109 PRK09637 RNA polymerase sigma 34.8 78 0.0017 27.6 5.0 32 93-125 120-151 (181)
110 KOG2009 Transcription initiati 34.7 25 0.00055 37.4 2.1 51 16-68 402-452 (584)
111 TIGR02943 Sig70_famx1 RNA poly 34.6 86 0.0019 27.5 5.2 32 93-125 145-176 (188)
112 PRK09648 RNA polymerase sigma 34.4 87 0.0019 27.1 5.2 31 94-125 154-184 (189)
113 TIGR02948 SigW_bacill RNA poly 34.2 73 0.0016 27.2 4.7 30 95-125 152-181 (187)
114 PRK09645 RNA polymerase sigma 34.1 88 0.0019 26.6 5.1 32 94-126 133-164 (173)
115 PRK09646 RNA polymerase sigma 33.9 92 0.002 27.3 5.3 33 94-127 157-189 (194)
116 PRK09642 RNA polymerase sigma 33.8 93 0.002 26.0 5.2 31 93-124 120-150 (160)
117 PRK12530 RNA polymerase sigma 33.5 87 0.0019 27.4 5.1 29 94-123 149-177 (189)
118 PRK12515 RNA polymerase sigma 32.7 95 0.0021 26.9 5.2 31 94-125 146-176 (189)
119 cd08805 Death_ank1 Death domai 32.5 51 0.0011 26.3 3.1 26 84-110 4-29 (84)
120 COG1522 Lrp Transcriptional re 32.4 81 0.0018 26.4 4.5 45 81-126 7-52 (154)
121 PRK12524 RNA polymerase sigma 32.1 95 0.002 27.2 5.1 32 93-125 150-181 (196)
122 TIGR02952 Sig70_famx2 RNA poly 31.7 1E+02 0.0022 25.8 5.1 30 94-124 137-166 (170)
123 PF13936 HTH_38: Helix-turn-he 31.6 40 0.00087 23.2 2.1 37 77-115 3-39 (44)
124 smart00005 DEATH DEATH domain, 31.3 50 0.0011 25.1 2.8 30 83-113 4-34 (88)
125 PRK11923 algU RNA polymerase s 31.2 91 0.002 27.1 4.8 28 95-123 154-181 (193)
126 PRK13919 putative RNA polymera 31.0 1.1E+02 0.0024 26.3 5.3 32 94-126 150-181 (186)
127 PRK12516 RNA polymerase sigma 31.0 1.1E+02 0.0023 27.0 5.2 35 90-125 127-161 (187)
128 PRK12536 RNA polymerase sigma 30.8 1.1E+02 0.0023 26.5 5.1 33 93-126 143-175 (181)
129 TIGR02983 SigE-fam_strep RNA p 30.8 1.1E+02 0.0025 25.5 5.2 43 84-127 115-157 (162)
130 PRK06759 RNA polymerase factor 30.7 1.1E+02 0.0025 25.2 5.1 30 94-124 121-150 (154)
131 PRK12527 RNA polymerase sigma 29.8 1.2E+02 0.0025 25.5 5.1 32 93-125 119-150 (159)
132 PF02954 HTH_8: Bacterial regu 29.6 90 0.002 21.1 3.6 34 83-117 6-39 (42)
133 cd08779 Death_PIDD Death Domai 29.6 51 0.0011 26.1 2.6 21 85-105 3-23 (86)
134 PF05734 DUF832: Herpesvirus p 29.5 23 0.00049 33.5 0.7 23 288-310 168-190 (228)
135 PRK09649 RNA polymerase sigma 29.5 1E+02 0.0023 26.8 4.9 32 94-126 145-176 (185)
136 TIGR02999 Sig-70_X6 RNA polyme 28.8 1.2E+02 0.0027 25.8 5.2 31 94-125 149-179 (183)
137 PRK00118 putative DNA-binding 28.5 1.3E+02 0.0029 24.9 5.0 42 81-123 19-60 (104)
138 PRK12547 RNA polymerase sigma 28.2 1.3E+02 0.0029 25.4 5.2 33 93-126 126-158 (164)
139 PRK12528 RNA polymerase sigma 28.0 1.2E+02 0.0026 25.4 4.9 30 93-123 127-156 (161)
140 PRK05602 RNA polymerase sigma 28.0 1.1E+02 0.0023 26.5 4.7 32 94-126 143-174 (186)
141 PRK12514 RNA polymerase sigma 27.8 1.3E+02 0.0027 25.8 5.0 30 95-125 145-174 (179)
142 PRK12532 RNA polymerase sigma 27.7 1.2E+02 0.0026 26.5 4.9 30 93-123 150-179 (195)
143 PF08870 DUF1832: Domain of un 27.3 1.9E+02 0.0042 24.2 5.8 94 26-130 4-102 (113)
144 PRK09651 RNA polymerase sigma 27.3 96 0.0021 26.6 4.2 30 94-124 134-163 (172)
145 TIGR02960 SigX5 RNA polymerase 27.2 1.1E+02 0.0024 28.9 5.0 33 94-127 157-189 (324)
146 PF07555 NAGidase: beta-N-acet 26.6 1.3E+02 0.0027 29.6 5.3 55 24-93 10-64 (306)
147 PRK12520 RNA polymerase sigma 25.5 1.5E+02 0.0032 25.8 5.1 30 94-124 146-175 (191)
148 PRK06811 RNA polymerase factor 25.4 1.5E+02 0.0033 25.7 5.2 30 95-125 147-176 (189)
149 PRK12545 RNA polymerase sigma 25.3 1.4E+02 0.0031 26.4 5.1 29 94-123 154-182 (201)
150 TIGR02984 Sig-70_plancto1 RNA 25.1 1.5E+02 0.0033 25.2 5.0 31 94-125 155-185 (189)
151 TIGR02950 SigM_subfam RNA poly 24.4 56 0.0012 27.0 2.1 29 95-124 121-149 (154)
152 PRK12542 RNA polymerase sigma 24.2 1.6E+02 0.0035 25.4 5.1 32 94-126 137-168 (185)
153 COG2963 Transposase and inacti 23.8 1.8E+02 0.0039 23.5 5.0 46 76-123 5-51 (116)
154 PRK09413 IS2 repressor TnpA; R 23.0 1.3E+02 0.0028 24.9 4.1 45 22-70 9-53 (121)
155 cd08306 Death_FADD Fas-associa 22.7 1.1E+02 0.0024 24.1 3.3 27 87-114 5-31 (86)
156 PRK09636 RNA polymerase sigma 22.7 2E+02 0.0044 27.0 5.8 33 94-127 130-162 (293)
157 PRK01905 DNA-binding protein F 22.6 1.8E+02 0.0039 22.3 4.5 36 81-117 36-71 (77)
158 PRK11922 RNA polymerase sigma 22.5 91 0.002 28.3 3.3 31 95-126 165-195 (231)
159 PRK09638 RNA polymerase sigma 22.1 79 0.0017 26.9 2.7 32 94-126 141-172 (176)
160 PRK12546 RNA polymerase sigma 21.9 1.7E+02 0.0036 25.9 4.8 33 93-126 127-159 (188)
161 PRK12537 RNA polymerase sigma 21.6 1.9E+02 0.0042 24.9 5.1 31 94-125 148-178 (182)
162 KOG4468 Polycomb-group transcr 21.5 62 0.0013 34.9 2.1 46 23-70 88-143 (782)
163 PRK09647 RNA polymerase sigma 21.4 1.9E+02 0.0042 25.8 5.2 32 94-126 153-184 (203)
164 PRK06986 fliA flagellar biosyn 21.4 1.7E+02 0.0036 26.7 4.8 33 93-126 198-230 (236)
165 KOG3841 TEF-1 and related tran 21.2 1.2E+02 0.0026 31.0 4.0 55 74-128 74-149 (455)
166 PRK12519 RNA polymerase sigma 21.0 1.6E+02 0.0034 25.5 4.4 30 94-124 156-185 (194)
167 PRK09639 RNA polymerase sigma 21.0 2E+02 0.0044 24.0 5.0 36 87-124 120-155 (166)
168 PF06583 Neogenin_C: Neogenin 20.6 37 0.0008 33.6 0.3 23 282-304 292-314 (319)
169 PF12884 TORC_N: Transducer of 20.4 32 0.00069 26.7 -0.1 11 295-305 22-32 (67)
170 cd01670 Death Death Domain: a 20.4 99 0.0022 22.9 2.6 26 87-113 2-27 (79)
171 PRK10100 DNA-binding transcrip 20.3 2E+02 0.0044 26.2 5.1 44 78-124 155-198 (216)
172 PRK15411 rcsA colanic acid cap 20.2 1.8E+02 0.0038 26.2 4.6 44 78-124 137-180 (207)
No 1
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=100.00 E-value=3.2e-34 Score=265.16 Aligned_cols=111 Identities=59% Similarity=1.031 Sum_probs=107.0
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCCh
Q 021164 19 NKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRW 98 (316)
Q Consensus 19 ~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~kW 98 (316)
+.+.||+||+|||++|+++|++||.++|..||+.++++|++++||.||.|||+|+++++.||+|||++|++||.+||++|
T Consensus 5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW 84 (238)
T KOG0048|consen 5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW 84 (238)
T ss_pred ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCHHHHHHHHHHHhHhhhhccC
Q 021164 99 SQIAARLPGRTDNEIKNFWNSTIKKRLKNLS 129 (316)
Q Consensus 99 ~~IAk~lpgRT~~q~KnRW~~llrk~~kk~~ 129 (316)
+.||++|||||+++|||+|+..+||++.+..
T Consensus 85 s~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 85 SLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred HHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999988765
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=100.00 E-value=2.2e-34 Score=266.07 Aligned_cols=121 Identities=52% Similarity=1.064 Sum_probs=111.9
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 021164 17 NGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGN 96 (316)
Q Consensus 17 ~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~ 96 (316)
.++.+++++||+|||++|+++|++||..+|..||+.++++|+++|||+||.++|+|.+++++||+|||++|++++.+||+
T Consensus 19 ~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~Gn 98 (249)
T PLN03212 19 TKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGN 98 (249)
T ss_pred ccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccc
Confidence 46789999999999999999999999989999999986699999999999999999999999999999999999999999
Q ss_pred ChHHhhccCCCCCHHHHHHHHHHHhHhhhhccCCCCCCCCC
Q 021164 97 RWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSSSSTPSP 137 (316)
Q Consensus 97 kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk~~~s~s~~sp 137 (316)
+|+.||++|||||+++|||||+.++++++++.........+
T Consensus 99 KWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp 139 (249)
T PLN03212 99 RWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKP 139 (249)
T ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999988876555444443
No 3
>PLN03091 hypothetical protein; Provisional
Probab=100.00 E-value=5e-33 Score=273.57 Aligned_cols=117 Identities=71% Similarity=1.262 Sum_probs=110.0
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 021164 17 NGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGN 96 (316)
Q Consensus 17 ~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~ 96 (316)
.+.+++|++||+|||++|+++|.+||..+|..||+.++++|+++|||+||.+||+|.+++++||+|||++|++++++||+
T Consensus 8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn 87 (459)
T PLN03091 8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN 87 (459)
T ss_pred cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence 46789999999999999999999999999999999887799999999999999999999999999999999999999999
Q ss_pred ChHHhhccCCCCCHHHHHHHHHHHhHhhhhccCCCCC
Q 021164 97 RWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSSSS 133 (316)
Q Consensus 97 kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk~~~s~s 133 (316)
+|.+||++|||||+++|||||+.++||+++.......
T Consensus 88 KWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~ 124 (459)
T PLN03091 88 RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPN 124 (459)
T ss_pred chHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999998876555443
No 4
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.78 E-value=1.7e-19 Score=183.84 Aligned_cols=111 Identities=23% Similarity=0.425 Sum_probs=100.6
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhC
Q 021164 16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLG 95 (316)
Q Consensus 16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G 95 (316)
...|.+++|+||++||.+|+.+|.+||.+.|.+|-+.+| +|+..|||+||+|.|+..++++.||-.||+.|+.+|++||
T Consensus 353 ~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG 431 (939)
T KOG0049|consen 353 TLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYG 431 (939)
T ss_pred ccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHc
Confidence 457899999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred -CChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 96 -NRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 96 -~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
++|.+||..||+||..|...|=..+++.++..
T Consensus 432 ~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~rl 464 (939)
T KOG0049|consen 432 KGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLRL 464 (939)
T ss_pred cchHHHHHHHccccchhHHHHHHHHHHHHHHHH
Confidence 78999999999999977666555555544443
No 5
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.71 E-value=9.1e-18 Score=171.28 Aligned_cols=112 Identities=26% Similarity=0.472 Sum_probs=97.1
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccc---------------------------
Q 021164 15 NSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWI--------------------------- 67 (316)
Q Consensus 15 n~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~--------------------------- 67 (316)
|+..|+++|.-|++|||++|..+...++..+|.+||..++..|+.-||.+|++
T Consensus 245 n~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~ 324 (939)
T KOG0049|consen 245 NELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITS 324 (939)
T ss_pred hhcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhh
Confidence 57789999999999999999999888887778888877763366666655544
Q ss_pred ---------------------------ccccCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHhhccCCCCCHHHHHHHHHH
Q 021164 68 ---------------------------NYLRPDLKRGAFSPQEEELIIHLHSLLGN-RWSQIAARLPGRTDNEIKNFWNS 119 (316)
Q Consensus 68 ---------------------------n~L~p~lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~lpgRT~~q~KnRW~~ 119 (316)
..|+|.+++|+||.+||.+|+.+|.+||. .|.+|...+|||++.|||.||..
T Consensus 325 ~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~n 404 (939)
T KOG0049|consen 325 INSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTN 404 (939)
T ss_pred ccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHH
Confidence 66899999999999999999999999995 59999999999999999999999
Q ss_pred HhHhhhh
Q 021164 120 TIKKRLK 126 (316)
Q Consensus 120 llrk~~k 126 (316)
.|.+..|
T Consensus 405 vL~~s~K 411 (939)
T KOG0049|consen 405 VLNRSAK 411 (939)
T ss_pred HHHHhhc
Confidence 8876555
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.63 E-value=1.4e-16 Score=117.24 Aligned_cols=60 Identities=38% Similarity=0.845 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHH
Q 021164 26 WSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELI 87 (316)
Q Consensus 26 WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~L 87 (316)
||+|||++|+.+|.+||. +|..||+.|+ .|++.||+.||.++|.|.+++++||++||++|
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 999999999999999995 5999999997 89999999999999999999999999999987
No 7
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.56 E-value=2.9e-15 Score=151.84 Aligned_cols=109 Identities=32% Similarity=0.487 Sum_probs=104.3
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 021164 17 NGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGN 96 (316)
Q Consensus 17 ~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~ 96 (316)
...+++.|.|+..||+.|..+|+++|..+|+.||..+. -|+++||+.||.++++|.+++..|+.|||+.|+.+..++|.
T Consensus 14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~ 92 (512)
T COG5147 14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT 92 (512)
T ss_pred ccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc
Confidence 56678889999999999999999999999999999998 69999999999999999999999999999999999999999
Q ss_pred ChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 97 RWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 97 kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
+|+.||..+++||..+|.+||..++....+
T Consensus 93 ~wstia~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 93 QWSTIADYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred hhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999887666
No 8
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=8.3e-15 Score=146.90 Aligned_cols=107 Identities=27% Similarity=0.597 Sum_probs=100.8
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCChHH
Q 021164 21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQ 100 (316)
Q Consensus 21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~kW~~ 100 (316)
++.|.|+--||+.|..+|.+||...|+.||+.++ -.+++||+.||..+|+|.+++..|+.|||++||.+...+...|..
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt 83 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT 83 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence 5678999999999999999999989999999998 899999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCHHHHHHHHHHHhHhhhhccC
Q 021164 101 IAARLPGRTDNEIKNFWNSTIKKRLKNLS 129 (316)
Q Consensus 101 IAk~lpgRT~~q~KnRW~~llrk~~kk~~ 129 (316)
||..+ |||.+||-.||..++-.......
T Consensus 84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~~~ 111 (617)
T KOG0050|consen 84 IADIM-GRTSQQCLERYNNLLDVYVSYHY 111 (617)
T ss_pred HHHHh-hhhHHHHHHHHHHHHHHHHhhhc
Confidence 99999 99999999999999977665443
No 9
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.40 E-value=5.5e-14 Score=99.68 Aligned_cols=48 Identities=38% Similarity=0.734 Sum_probs=43.6
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 021164 23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYL 70 (316)
Q Consensus 23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L 70 (316)
|++||+|||++|+++|.+||..+|..||..|+.+||+.||+.||.++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998889999999987999999999999875
No 10
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.38 E-value=4.7e-13 Score=94.88 Aligned_cols=46 Identities=28% Similarity=0.674 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC-hHHhhccCC-CCCHHHHHHHHHHHh
Q 021164 76 RGAFSPQEEELIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNSTI 121 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~G~k-W~~IAk~lp-gRT~~q~KnRW~~ll 121 (316)
+++||+|||++|++++.+||.. |..||..|| +||..||++||+.++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999988 999999999 999999999998764
No 11
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.36 E-value=4.7e-13 Score=137.36 Aligned_cols=102 Identities=25% Similarity=0.588 Sum_probs=91.7
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCC--CCCCCCCHHHHHHHHHHHH-------
Q 021164 22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPD--LKRGAFSPQEEELIIHLHS------- 92 (316)
Q Consensus 22 kKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~--lkk~~WT~EED~~Llelv~------- 92 (316)
.+|.||+||++.|..++.++|.. |..|++.|+ |.+..||+||++|..+. .++++||.||+++|+++|.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~~-W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~ 459 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGND-WKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL 459 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhccc-HHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999965 999999885 99999999999999887 5999999999999999995
Q ss_pred Hh-------------------CCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 93 LL-------------------GNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 93 ~~-------------------G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
++ +-.|..|++.+.+|+..|||.+|..++.+...
T Consensus 460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~ 512 (607)
T KOG0051|consen 460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSF 512 (607)
T ss_pred cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHh
Confidence 33 12699999999999999999999999876543
No 12
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.24 E-value=8.5e-12 Score=91.66 Aligned_cols=45 Identities=31% Similarity=0.689 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 79 FSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 79 WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
||+|||++|+++|.+||.+|.+||++|+.||+.+|++||+..+++
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~ 45 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRP 45 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTST
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcc
Confidence 999999999999999999999999999669999999999996653
No 13
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.24 E-value=1.5e-11 Score=84.26 Aligned_cols=47 Identities=40% Similarity=0.853 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164 76 RGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIK 122 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llr 122 (316)
+++||++||++|+.++.+|| .+|..||+.|++||+.+|++||..+++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999 999999999999999999999998764
No 14
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.12 E-value=7.7e-11 Score=109.97 Aligned_cols=68 Identities=19% Similarity=0.451 Sum_probs=58.5
Q ss_pred ccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhC-CChHHhhccC-CCCCHHHHHHHHHHHhHhhhhc
Q 021164 52 NAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLG-NRWSQIAARL-PGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 52 ~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~l-pgRT~~q~KnRW~~llrk~~kk 127 (316)
.++ +|++.-|.. +.+++++||+|||++|+++|++|| .+|..||+.+ ++||+.|||.||...|+..+++
T Consensus 9 ~~~-~~~~pcc~K-------~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~k 78 (249)
T PLN03212 9 PVS-KKTTPCCTK-------MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKR 78 (249)
T ss_pred CCC-CCCCCCccc-------CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhccc
Confidence 455 677665543 578999999999999999999999 5799999998 7999999999999999877665
No 15
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.11 E-value=1.5e-10 Score=78.21 Aligned_cols=43 Identities=33% Similarity=0.736 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHH
Q 021164 78 AFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNST 120 (316)
Q Consensus 78 ~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~l 120 (316)
+||++|+++|++++.+|| .+|..||+.+++||..+|++||..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 699999999999999999 8999999999999999999999875
No 16
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.07 E-value=5.3e-11 Score=81.50 Aligned_cols=48 Identities=38% Similarity=0.808 Sum_probs=44.3
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccc
Q 021164 23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLR 71 (316)
Q Consensus 23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~ 71 (316)
+++||++||++|+.++.+||..+|..||..++ +|++.+|+.||.+++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence 46899999999999999999667999999998 9999999999998764
No 17
>PLN03091 hypothetical protein; Provisional
Probab=98.94 E-value=6.8e-10 Score=110.71 Aligned_cols=56 Identities=23% Similarity=0.520 Sum_probs=50.3
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHhhccC-CCCCHHHHHHHHHHHhHhhhh
Q 021164 71 RPDLKRGAFSPQEEELIIHLHSLLGN-RWSQIAARL-PGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 71 ~p~lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~l-pgRT~~q~KnRW~~llrk~~k 126 (316)
++.+++++||+|||++|+++|++||. +|..||+.+ ++||+.|||.||...|+..++
T Consensus 9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~Ik 66 (459)
T PLN03091 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLK 66 (459)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCccc
Confidence 46799999999999999999999994 799999988 699999999999988876554
No 18
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.93 E-value=7.5e-10 Score=102.84 Aligned_cols=57 Identities=18% Similarity=0.313 Sum_probs=51.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-ChHHhhccCC-CCCHHHHHHHHHHHhHhhhhcc
Q 021164 72 PDLKRGAFSPQEEELIIHLHSLLGN-RWSQIAARLP-GRTDNEIKNFWNSTIKKRLKNL 128 (316)
Q Consensus 72 p~lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~lp-gRT~~q~KnRW~~llrk~~kk~ 128 (316)
+.+.+||||+|||++|+++|++||. +|..||+.++ +|++.+||-||..+|+..+++.
T Consensus 5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg 63 (238)
T KOG0048|consen 5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRG 63 (238)
T ss_pred ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCC
Confidence 4455899999999999999999995 6999999998 9999999999999999888753
No 19
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.92 E-value=3.9e-10 Score=76.20 Aligned_cols=45 Identities=38% Similarity=0.762 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 021164 25 LWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYL 70 (316)
Q Consensus 25 ~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L 70 (316)
+||++||++|+.++.++|..+|..||+.++ +|++.||+.||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHhC
Confidence 599999999999999999777999999998 899999999998753
No 20
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=98.87 E-value=2.5e-09 Score=110.32 Aligned_cols=105 Identities=27% Similarity=0.365 Sum_probs=88.2
Q ss_pred CCcccCCCHHHHHHHHHHHHHhC-----------------------CCCccccccccccccccccccccccccccCCC-C
Q 021164 20 KLRKGLWSPEEDDKLMNYMLKNG-----------------------QGCWSDVARNAGLQRCGKSCRLRWINYLRPDL-K 75 (316)
Q Consensus 20 ~lkKg~WT~EEDe~L~~lV~kyG-----------------------~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~l-k 75 (316)
-++-+.|+.+||+.|.+.|..|- .+.|..|...+| .|+...++..-++...|-- +
T Consensus 305 e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~~ 383 (607)
T KOG0051|consen 305 EINLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFENK 383 (607)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCccccc
Confidence 45668999999999999998872 113677778888 6999998875445545444 9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 76 RGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
+|.||+||++.|..+|.++|+.|..|++.| ||.+.+|+.||+.+++...+
T Consensus 384 rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~ 433 (607)
T KOG0051|consen 384 RGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSK 433 (607)
T ss_pred cCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999 99999999999999876653
No 21
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.18 E-value=6.9e-07 Score=91.42 Aligned_cols=106 Identities=20% Similarity=0.193 Sum_probs=90.6
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHH
Q 021164 14 SNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSL 93 (316)
Q Consensus 14 ~n~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~ 93 (316)
.+...+.++++.|+.|||++|+.+-.++|.. |..||..++ +|+..||.+||.+.|.+..+ .+|+..++...+..+..
T Consensus 63 ~~~lnp~lk~~~~~~eed~~li~l~~~~~~~-wstia~~~d-~rt~~~~~ery~~~~~~~~s-~~~s~~~~~~~f~k~d~ 139 (512)
T COG5147 63 NNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ-WSTIADYKD-RRTAQQCVERYVNTLEDLSS-THDSKLQRRNEFDKIDP 139 (512)
T ss_pred hhhhchhcccccccHHHHHHHHHHHHhcCch-hhhhccccC-ccchHHHHHHHHHHhhhhhc-cccccccchhhccccCc
Confidence 4677899999999999999999999999988 999999998 99999999999999987766 89999999888888888
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIK 122 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llr 122 (316)
|+..|.++....-.+-...+.|++..+..
T Consensus 140 f~~~~~~~~~~~~~~~~~~~~N~~~~~~~ 168 (512)
T COG5147 140 FNENSARRPDIYEDELLEREVNREASYRL 168 (512)
T ss_pred hhhhhhhhhhhhhcccchhhhhHHHHHHH
Confidence 88888877766656666666666654443
No 22
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.84 E-value=8.2e-06 Score=60.65 Aligned_cols=49 Identities=12% Similarity=0.270 Sum_probs=43.2
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCc---ccccccccccc-ccccccccccccc
Q 021164 22 RKGLWSPEEDDKLMNYMLKNGQGCW---SDVARNAGLQR-CGKSCRLRWINYL 70 (316)
Q Consensus 22 kKg~WT~EEDe~L~~lV~kyG~~nW---~~IA~~l~~gR-t~kQCr~RW~n~L 70 (316)
++-.||+||.++++++|+.+|.++| ..|++.|...| |..||+.+++.|.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3567999999999999999998889 99999887567 9999999988764
No 23
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.69 E-value=9.6e-05 Score=54.94 Aligned_cols=46 Identities=13% Similarity=0.274 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-Ch---HHhhccCC-CC-CHHHHHHHHHHHh
Q 021164 76 RGAFSPQEEELIIHLHSLLGN-RW---SQIAARLP-GR-TDNEIKNFWNSTI 121 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~G~-kW---~~IAk~lp-gR-T~~q~KnRW~~ll 121 (316)
+-.||+||..+++++++.+|. +| ..|++.+. .| |..||+.++..+.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 558999999999999999996 99 99999873 45 9999999987654
No 24
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.62 E-value=2.1e-05 Score=78.77 Aligned_cols=51 Identities=20% Similarity=0.495 Sum_probs=46.8
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 021164 19 NKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYL 70 (316)
Q Consensus 19 ~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L 70 (316)
-++-..-||.+|+-+|++++..||.+||..||.+++ +|+..+|+++|.+++
T Consensus 68 ~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 68 FPILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence 445567899999999999999999999999999999 999999999998864
No 25
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=97.60 E-value=0.00015 Score=66.46 Aligned_cols=100 Identities=22% Similarity=0.370 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccccc--cccccccccccccccc-cCCC--------------------CCCCCCH
Q 021164 25 LWSPEEDDKLMNYMLKNGQGCWSDVARNAG--LQRCGKSCRLRWINYL-RPDL--------------------KRGAFSP 81 (316)
Q Consensus 25 ~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~--~gRt~kQCr~RW~n~L-~p~l--------------------kk~~WT~ 81 (316)
+|++++|-+|+.+|..-. +-..|+.-+. ..-|.+.+.+||+..| +|.+ .+.+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 599999999999998765 2455554332 2346677889999765 4433 4579999
Q ss_pred HHHHHHHHHHHHhCC---ChHHhhc----cC-CCCCHHHHHHHHHHHhHhhhh
Q 021164 82 QEEELIIHLHSLLGN---RWSQIAA----RL-PGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 82 EED~~Llelv~~~G~---kW~~IAk----~l-pgRT~~q~KnRW~~llrk~~k 126 (316)
+|+++|......... .+.+|=. .| ++||+.++.++|..+.+..+-
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL 131 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLL 131 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchh
Confidence 999999998766543 4666632 24 889999999999966555543
No 26
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.45 E-value=0.0002 Score=71.85 Aligned_cols=49 Identities=20% Similarity=0.418 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHh
Q 021164 73 DLKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTI 121 (316)
Q Consensus 73 ~lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~ll 121 (316)
.+-...||.+|+.+||++++.|| ++|..||+++..||..+||.+|....
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence 45567899999999999999999 99999999999999999999997655
No 27
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.24 E-value=0.00031 Score=54.74 Aligned_cols=53 Identities=30% Similarity=0.473 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHH------hC--C------ChHHhhccC----CCCCHHHHHHHHHHHhHhhhhcc
Q 021164 76 RGAFSPQEEELIIHLHSL------LG--N------RWSQIAARL----PGRTDNEIKNFWNSTIKKRLKNL 128 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~------~G--~------kW~~IAk~l----pgRT~~q~KnRW~~llrk~~kk~ 128 (316)
+..||.+|...||+++.+ ++ + -|..||..| ..||+.||++||+.|.++..+..
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k 71 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIK 71 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999987 21 1 499999876 46999999999999887665543
No 28
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=97.17 E-value=0.00047 Score=61.20 Aligned_cols=51 Identities=20% Similarity=0.387 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHHh---CC----ChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 75 KRGAFSPQEEELIIHLHSLL---GN----RWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 75 kk~~WT~EED~~Llelv~~~---G~----kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
+...||.|||.+|.+.|-+| |+ -...+++.| +||..+|-=||++.+|+.+.
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~ 60 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYE 60 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHH
Confidence 56799999999999999887 53 378889999 99999999999999998765
No 29
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=97.13 E-value=0.00054 Score=52.23 Aligned_cols=50 Identities=16% Similarity=0.413 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCC-hHHhhccCC-CCCHHHHHHHHHHHhHhhh
Q 021164 76 RGAFSPQEEELIIHLHSLL--------GNR-WSQIAARLP-GRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~--------G~k-W~~IAk~lp-gRT~~q~KnRW~~llrk~~ 125 (316)
+.+||.|||..|++.|.++ |++ |.++++.-+ .+|-.+.|+||...|+.+.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 5689999999999999765 233 999999877 8999999999987776554
No 30
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=97.07 E-value=0.00069 Score=69.78 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHh
Q 021164 74 LKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTI 121 (316)
Q Consensus 74 lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~ll 121 (316)
..+..||++|..+||++++.||.+|.+||.++.+||..||--||..+-
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~LP 298 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRLP 298 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhcC
Confidence 346789999999999999999999999999999999999999997654
No 31
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=0.00044 Score=70.80 Aligned_cols=54 Identities=28% Similarity=0.510 Sum_probs=49.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 74 LKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 74 lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
++.+.|+.-||+.|-.+|.+|| +.|+.|++.++-.|..||++||...+...+++
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~ 59 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKK 59 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhh
Confidence 5678999999999999999999 56999999999999999999999888776654
No 32
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.03 E-value=0.00062 Score=69.02 Aligned_cols=45 Identities=18% Similarity=0.306 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHH
Q 021164 76 RGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNST 120 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~l 120 (316)
...||.+|..+|++.++.||..|.+||+++.+||..||--||.++
T Consensus 279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 358999999999999999999999999999999999999999765
No 33
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.85 E-value=0.00038 Score=70.48 Aligned_cols=46 Identities=28% Similarity=0.558 Sum_probs=42.8
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 021164 22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINY 69 (316)
Q Consensus 22 kKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~ 69 (316)
+...||.+|..+|+++|+.||.. |.+||++++ +|+..||..|+.+.
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDd-W~kVA~HVg-tKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDD-WDKVARHVG-TKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhh-HHHHHHHhC-CCCHHHHHHHHHcC
Confidence 56789999999999999999976 999999999 99999999999874
No 34
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.50 E-value=0.0011 Score=68.20 Aligned_cols=47 Identities=21% Similarity=0.529 Sum_probs=42.8
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 021164 21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINY 69 (316)
Q Consensus 21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~ 69 (316)
..+..||.+|..+|+++|+.||.. |.+||.+++ +|+..||..++.+.
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~dd-W~kVa~hVg-~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGDD-WNKVADHVG-TKSQEQCILKFLRL 297 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhccc-HHHHHhccC-CCCHHHHHHHHHhc
Confidence 346779999999999999999976 999999999 99999999998864
No 35
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=96.12 E-value=0.01 Score=45.50 Aligned_cols=52 Identities=27% Similarity=0.487 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHh-----C------------CChHHhhccC-----CCCCHHHHHHHHHHHhHhhhhc
Q 021164 76 RGAFSPQEEELIIHLHSLL-----G------------NRWSQIAARL-----PGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~-----G------------~kW~~IAk~l-----pgRT~~q~KnRW~~llrk~~kk 127 (316)
+..||.+|.+.|++++.+| | .-|.+|+..| +.||..++|.+|..+.....++
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk~ 75 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKKK 75 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999987 2 1499999865 3599999999999887765443
No 36
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=95.89 E-value=0.0084 Score=53.86 Aligned_cols=51 Identities=18% Similarity=0.338 Sum_probs=42.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC----C---hHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 74 LKRGAFSPQEEELIIHLHSLLGN----R---WSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 74 lkk~~WT~EED~~Llelv~~~G~----k---W~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
.++..||.|||.+|.+.|-+|+. + ...++..| +||..+|.-||++.+|+.+
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Y 60 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQY 60 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHH
Confidence 35679999999999999988863 2 45566777 9999999999999998654
No 37
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=95.87 E-value=0.0026 Score=48.56 Aligned_cols=52 Identities=21% Similarity=0.419 Sum_probs=32.0
Q ss_pred ccCCCHHHHHHHHHHHHHhC--------CCCccccccccccccccccccccccccccCCC
Q 021164 23 KGLWSPEEDDKLMNYMLKNG--------QGCWSDVARNAGLQRCGKSCRLRWINYLRPDL 74 (316)
Q Consensus 23 Kg~WT~EEDe~L~~lV~kyG--------~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~l 74 (316)
+.+||.|||+.|+..|.++. ..=|..+|+.-+..+|-.+-|+||...|.+..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 46899999999999997653 22399999876645666677999999887653
No 38
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.87 E-value=0.0022 Score=49.91 Aligned_cols=47 Identities=28% Similarity=0.639 Sum_probs=32.5
Q ss_pred cCCCHHHHHHHHHHHHHh------C---C----CCcccccccc---ccccccccccccccccc
Q 021164 24 GLWSPEEDDKLMNYMLKN------G---Q----GCWSDVARNA---GLQRCGKSCRLRWINYL 70 (316)
Q Consensus 24 g~WT~EEDe~L~~lV~ky------G---~----~nW~~IA~~l---~~gRt~kQCr~RW~n~L 70 (316)
..||.+|...|++++... + . .-|..||..| +..|++.||+.||.+..
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~ 64 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK 64 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 479999999999998771 1 1 1399999876 45799999999998753
No 39
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.38 E-value=0.0041 Score=47.71 Aligned_cols=49 Identities=27% Similarity=0.439 Sum_probs=39.6
Q ss_pred cccCCCHHHHHHHHHHHHHhC----------------CCCcccccccc----ccccccccccccccccc
Q 021164 22 RKGLWSPEEDDKLMNYMLKNG----------------QGCWSDVARNA----GLQRCGKSCRLRWINYL 70 (316)
Q Consensus 22 kKg~WT~EEDe~L~~lV~kyG----------------~~nW~~IA~~l----~~gRt~kQCr~RW~n~L 70 (316)
++..||++|.+.|+++|.+|. ...|..||..+ +..|+..|++.+|.++.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 456799999999999999973 12499999866 23699999999998764
No 40
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.25 E-value=0.0052 Score=60.07 Aligned_cols=50 Identities=20% Similarity=0.467 Sum_probs=45.6
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccc
Q 021164 21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLR 71 (316)
Q Consensus 21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~ 71 (316)
+----|+..|+.+|+++....|.+||..||..++ .|+...|+++|..++.
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~ 110 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD 110 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence 3445699999999999999999999999999999 9999999999998765
No 41
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.23 E-value=0.006 Score=54.23 Aligned_cols=49 Identities=31% Similarity=0.653 Sum_probs=41.5
Q ss_pred CcccCCCHHHHHHHHHHHHHhCC------CCcccccccccccccccccccccccccc
Q 021164 21 LRKGLWSPEEDDKLMNYMLKNGQ------GCWSDVARNAGLQRCGKSCRLRWINYLR 71 (316)
Q Consensus 21 lkKg~WT~EEDe~L~~lV~kyG~------~nW~~IA~~l~~gRt~kQCr~RW~n~L~ 71 (316)
.++..||.|||.+|.+.|.+|-. .....|++.+. ||+.-|.=||.-++.
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VR 56 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVR 56 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHH
Confidence 46788999999999999998832 24788888875 999999999998876
No 42
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=94.84 E-value=0.03 Score=56.02 Aligned_cols=86 Identities=23% Similarity=0.317 Sum_probs=66.7
Q ss_pred CccccccccccccccccccccccccccCC-------------------------CCCCCCCHHHHHHHHHHHHHhCCChH
Q 021164 45 CWSDVARNAGLQRCGKSCRLRWINYLRPD-------------------------LKRGAFSPQEEELIIHLHSLLGNRWS 99 (316)
Q Consensus 45 nW~~IA~~l~~gRt~kQCr~RW~n~L~p~-------------------------lkk~~WT~EED~~Llelv~~~G~kW~ 99 (316)
.|.-+.=..+ -|...-...+|.+.-++. ++...||.+|-+.|+++.+.|.-+|-
T Consensus 75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~ 153 (445)
T KOG2656|consen 75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF 153 (445)
T ss_pred CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence 4766654443 676766777777663321 23457999999999999999999999
Q ss_pred Hhhcc-----CCC-CCHHHHHHHHHHHhHhhhhccCCC
Q 021164 100 QIAAR-----LPG-RTDNEIKNFWNSTIKKRLKNLSSS 131 (316)
Q Consensus 100 ~IAk~-----lpg-RT~~q~KnRW~~llrk~~kk~~~s 131 (316)
.||.+ ++. ||-..+|.||..+.++..+....+
T Consensus 154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s 191 (445)
T KOG2656|consen 154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPS 191 (445)
T ss_pred EEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCC
Confidence 99987 655 999999999999999888765444
No 43
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.80 E-value=0.04 Score=54.09 Aligned_cols=49 Identities=27% Similarity=0.474 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164 74 LKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIK 122 (316)
Q Consensus 74 lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llr 122 (316)
+--..|+.+|+.+|+++...+| ++|..||.++..|+...||.+|..+.-
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 3445799999999999999999 899999999988999999999976543
No 44
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=94.11 E-value=0.12 Score=50.40 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHHHh----------CCChHHhhccC----CCCCHHHHHHHHHHHhHhhhhccCCC
Q 021164 76 RGAFSPQEEELIIHLHSLL----------GNRWSQIAARL----PGRTDNEIKNFWNSTIKKRLKNLSSS 131 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~----------G~kW~~IAk~l----pgRT~~q~KnRW~~llrk~~kk~~~s 131 (316)
...|+.+|-..||++..+. +..|..||+.+ .-||+.+||+||..+.++..+.+...
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~ 123 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKK 123 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 4789999999999999764 34599999954 45999999999999988776654443
No 45
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=94.03 E-value=0.09 Score=58.74 Aligned_cols=98 Identities=15% Similarity=0.303 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------cccc------c-----------------------
Q 021164 26 WSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRL-------RWIN------Y----------------------- 69 (316)
Q Consensus 26 WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~-------RW~n------~----------------------- 69 (316)
||..+=..++.+..+||..+-..||..|. +++...++. ||.. |
T Consensus 827 w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~ 905 (1033)
T PLN03142 827 WSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK 905 (1033)
T ss_pred ccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788889999888899999997 788777653 2211 0
Q ss_pred -------------c-cCCCCCCCCCHHHHHHHHHHHHHhC-CChHHhhcc------------CCCCCHHHHHHHHHHHhH
Q 021164 70 -------------L-RPDLKRGAFSPQEEELIIHLHSLLG-NRWSQIAAR------------LPGRTDNEIKNFWNSTIK 122 (316)
Q Consensus 70 -------------L-~p~lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~------------lpgRT~~q~KnRW~~llr 122 (316)
+ -+..++..+|+|||..|+-.+.+|| .+|..|-.. |..||+..|..|-..|++
T Consensus 906 k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~ 985 (1033)
T PLN03142 906 KLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR 985 (1033)
T ss_pred HHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence 0 0223456799999999999999999 779998332 257999999999998887
Q ss_pred hh
Q 021164 123 KR 124 (316)
Q Consensus 123 k~ 124 (316)
-.
T Consensus 986 ~~ 987 (1033)
T PLN03142 986 LI 987 (1033)
T ss_pred HH
Confidence 54
No 46
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=93.90 E-value=0.014 Score=52.45 Aligned_cols=50 Identities=26% Similarity=0.593 Sum_probs=39.2
Q ss_pred CCcccCCCHHHHHHHHHHHHHhCCC------Ccccccccccccccccccccccccccc
Q 021164 20 KLRKGLWSPEEDDKLMNYMLKNGQG------CWSDVARNAGLQRCGKSCRLRWINYLR 71 (316)
Q Consensus 20 ~lkKg~WT~EEDe~L~~lV~kyG~~------nW~~IA~~l~~gRt~kQCr~RW~n~L~ 71 (316)
+.++..||.|||.+|.+.|.+|+.. ....++..+ .|++.+|..||.-++.
T Consensus 2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L--~rt~aac~fRwNs~vr 57 (170)
T PRK13923 2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL--KRTAAACGFRWNSVVR 57 (170)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--hhhHHHHHhHHHHHHH
Confidence 4577899999999999999888642 245555665 5999999999976655
No 47
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=92.40 E-value=0.32 Score=38.17 Aligned_cols=47 Identities=28% Similarity=0.593 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHHh---CC----------ChHHhhccC---CC--CCHHHHHHHHHHHhHhh
Q 021164 78 AFSPQEEELIIHLHSLL---GN----------RWSQIAARL---PG--RTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 78 ~WT~EED~~Llelv~~~---G~----------kW~~IAk~l---pg--RT~~q~KnRW~~llrk~ 124 (316)
.||+++++.|++++.+. |+ .|..|++.| +| .|..||++||..+.+..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y 65 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDY 65 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence 49999999999998653 21 399998876 33 57899999998887754
No 48
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=91.84 E-value=0.24 Score=49.71 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 77 GAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 77 ~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
.+||.+|-++...+...+|..+..||..||.|...|||.+|..--|+
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~ 412 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV 412 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence 48999999999999999999999999999999999999999765554
No 49
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=88.69 E-value=0.62 Score=39.52 Aligned_cols=54 Identities=24% Similarity=0.420 Sum_probs=41.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----ChHHhhcc------------CCCCCHHHHHHHHHHHhHhhhh
Q 021164 73 DLKRGAFSPQEEELIIHLHSLLGN----RWSQIAAR------------LPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 73 ~lkk~~WT~EED~~Llelv~~~G~----kW~~IAk~------------lpgRT~~q~KnRW~~llrk~~k 126 (316)
..++..||++||..|+-++.+||- .|..|... |..||+..|..|=..|++--.+
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~K 115 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIEK 115 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHHH
Confidence 566789999999999999999995 79888553 2459999999999988875443
No 50
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=87.47 E-value=1.2 Score=31.35 Aligned_cols=42 Identities=26% Similarity=0.405 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 81 PQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 81 ~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
++++..++.++...|-.|.+||+.+ |.|...|+.+....+++
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~ 53 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK 53 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence 4678888899888999999999999 99999999988776654
No 51
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=86.97 E-value=1.7 Score=44.71 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 76 RGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
...||.||--++-+++..||++..+|-+.||.|+-..+...|....+.
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~ 234 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKT 234 (534)
T ss_pred cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999888766543
No 52
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=83.78 E-value=0.67 Score=46.64 Aligned_cols=66 Identities=21% Similarity=0.285 Sum_probs=50.8
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc--ccCC-----C-CCCCCCHHHHHH
Q 021164 19 NKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINY--LRPD-----L-KRGAFSPQEEEL 86 (316)
Q Consensus 19 ~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~--L~p~-----l-kk~~WT~EED~~ 86 (316)
.+..--+||.+|-+++.++....|.. +..||..+| +|..+|++.+|.+- .+|. + .+.|+..+|-..
T Consensus 361 ~~~~~~~Ws~~e~ekFYKALs~wGtd-F~LIs~lfP-~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY~k 434 (507)
T COG5118 361 KKKGALRWSKKEIEKFYKALSIWGTD-FSLISSLFP-NRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEYNK 434 (507)
T ss_pred CCCCCCcccHHHHHHHHHHHHHhcch-HHHHHHhcC-chhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHHhh
Confidence 33445679999999999999999986 999999998 99999999998763 2332 1 245666666543
No 53
>smart00595 MADF subfamily of SANT domain.
Probab=78.16 E-value=2.7 Score=32.52 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=23.0
Q ss_pred ChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 97 RWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 97 kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
-|.+||..| |-|..+|+.+|+++....
T Consensus 29 aW~~Ia~~l-~~~~~~~~~kw~~LR~~y 55 (89)
T smart00595 29 AWEEIAEEL-GLSVEECKKRWKNLRDRY 55 (89)
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 499999999 559999999999887543
No 54
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=76.01 E-value=1.9 Score=36.53 Aligned_cols=34 Identities=29% Similarity=0.558 Sum_probs=27.6
Q ss_pred CCcccCCCHHHHHHHHHHHHHhCC---CCcccccccc
Q 021164 20 KLRKGLWSPEEDDKLMNYMLKNGQ---GCWSDVARNA 53 (316)
Q Consensus 20 ~lkKg~WT~EEDe~L~~lV~kyG~---~nW~~IA~~l 53 (316)
..++..||.+||.-|+-++.+||. ++|..|-..+
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I 82 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI 82 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 445788999999999999999998 7899987654
No 55
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=73.36 E-value=2.9 Score=40.76 Aligned_cols=47 Identities=30% Similarity=0.451 Sum_probs=36.5
Q ss_pred cCCCHHHHHHHHHHHHHh----C-----CCCcccccccc---ccccccccccccccccc
Q 021164 24 GLWSPEEDDKLMNYMLKN----G-----QGCWSDVARNA---GLQRCGKSCRLRWINYL 70 (316)
Q Consensus 24 g~WT~EEDe~L~~lV~ky----G-----~~nW~~IA~~l---~~gRt~kQCr~RW~n~L 70 (316)
..|+.+|-..|+++..+. . ..-|..||+.+ +..|++.||+.||.+..
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~ 113 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK 113 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 789999999999887542 1 23499999843 45699999999998743
No 56
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=72.65 E-value=6.1 Score=42.11 Aligned_cols=53 Identities=17% Similarity=0.418 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHhhc----------cCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 75 KRGAFSPQEEELIIHLHSLLGNRWSQIAA----------RLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 75 kk~~WT~EED~~Llelv~~~G~kW~~IAk----------~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
++..||-+|++-...+++++|++..+|-. ...-+|-.|++.+|+.++++-.+-
T Consensus 87 ~ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~ 149 (782)
T KOG4468|consen 87 AKTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKL 149 (782)
T ss_pred cccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 36789999999999999999999988822 233467789999998888765543
No 57
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=72.34 E-value=11 Score=41.19 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=37.6
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccc
Q 021164 23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWIN 68 (316)
Q Consensus 23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n 68 (316)
..+||+.|..++.+++..|.. ++-.|++.++ ++|.+||-+-|..
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~K-DF~~v~km~~-~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSK-DFIFVQKMVK-SKTVAQCVEYYYT 662 (907)
T ss_pred cccccHHHHHHHHHHHHHhcc-cHHHHHHHhc-cccHHHHHHHHHH
Confidence 457999999999999999974 5999999998 9999999876543
No 58
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=71.52 E-value=7.5 Score=26.89 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhCC-ChHHhhccCCCCCHHHHHHHHHHH
Q 021164 82 QEEELIIHLHSLLGN-RWSQIAARLPGRTDNEIKNFWNST 120 (316)
Q Consensus 82 EED~~Llelv~~~G~-kW~~IAk~lpgRT~~q~KnRW~~l 120 (316)
+=|.+|+.+.++-|. .|.+||+.+ |=|...|..|++.+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHHh
Confidence 457889999998884 599999999 99999999998765
No 59
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=71.21 E-value=6.6 Score=33.84 Aligned_cols=46 Identities=9% Similarity=0.075 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 81 PQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 81 ~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
.+-|.+|+++.++-| -.|++||+.+ |-|...|+.|++.+.....-+
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~GvI~ 54 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAGIIT 54 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 367899999999988 4699999999 999999999999998876543
No 60
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=70.55 E-value=10 Score=26.40 Aligned_cols=42 Identities=26% Similarity=0.410 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 82 QEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 82 EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
+++..++.++--.|-.+.+||+.+ |-|...|+.+.+..+++-
T Consensus 7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~~~al~kL 48 (50)
T PF04545_consen 7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRILKRALKKL 48 (50)
T ss_dssp HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHHHHHHHHh
Confidence 556666666666677899999999 999999999888777653
No 61
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=69.64 E-value=12 Score=30.54 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHHh----C----CChHHhhc----cC-CCCCHHHHHHHHHHHhHhhhhcc
Q 021164 76 RGAFSPQEEELIIHLHSLL----G----NRWSQIAA----RL-PGRTDNEIKNFWNSTIKKRLKNL 128 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~----G----~kW~~IAk----~l-pgRT~~q~KnRW~~llrk~~kk~ 128 (316)
..-||+|+|..||+.+-.| | ..|..+-. .+ ..=|..|+.++.+.|.++.....
T Consensus 4 qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~ 69 (98)
T PF04504_consen 4 QRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAV 69 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3469999999999999776 6 34544433 33 22488999999988887765543
No 62
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=68.28 E-value=4.8 Score=31.88 Aligned_cols=24 Identities=33% Similarity=0.736 Sum_probs=14.2
Q ss_pred CCCcccCCCHHHHHHH--------HHHHHHhC
Q 021164 19 NKLRKGLWSPEEDDKL--------MNYMLKNG 42 (316)
Q Consensus 19 ~~lkKg~WT~EEDe~L--------~~lV~kyG 42 (316)
|....|-||+|+|+.| .+++++||
T Consensus 43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG 74 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG 74 (87)
T ss_dssp -TT-TT---HHHHHHHTS--HHHHHHHHHHH-
T ss_pred CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC
Confidence 5566899999999999 35667777
No 63
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=67.30 E-value=5.6 Score=35.35 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHH
Q 021164 78 AFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNS 119 (316)
Q Consensus 78 ~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~ 119 (316)
.||+|+.++|.+|..+ |-.=++||+.|.+.|.++|.-+-+.
T Consensus 2 ~Wtde~~~~L~~lw~~-G~SasqIA~~lg~vsRnAViGk~hR 42 (162)
T PF07750_consen 2 SWTDERVERLRKLWAE-GLSASQIARQLGGVSRNAVIGKAHR 42 (162)
T ss_pred CCCHHHHHHHHHHHHc-CCCHHHHHHHhCCcchhhhhhhhhc
Confidence 5999999999999854 8899999999977999999877654
No 64
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=65.41 E-value=15 Score=30.36 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 83 EEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 83 ED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
++..++.+.-..|-.+.+||+.+ |.|...|+.+....+++-
T Consensus 117 ~~r~il~l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~L 157 (161)
T TIGR02985 117 QCRKIFILSRFEGKSYKEIAEEL-GISVKTVEYHISKALKEL 157 (161)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 33344444344578999999999 999999999998766554
No 65
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=64.19 E-value=9.2 Score=33.41 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhCC-ChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 81 PQEEELIIHLHSLLGN-RWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 81 ~EED~~Llelv~~~G~-kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
.+-|.+|+.+.++-|. .|++||+.+ |=|...|+.|++.+.+...-
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~GvI 58 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGFI 58 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 4678999999988884 699999999 99999999999999987754
No 66
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=63.59 E-value=3.7 Score=32.03 Aligned_cols=44 Identities=23% Similarity=0.610 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHh---CCC---------Cccccccccc----cccccccccccccc
Q 021164 25 LWSPEEDDKLMNYMLKN---GQG---------CWSDVARNAG----LQRCGKSCRLRWIN 68 (316)
Q Consensus 25 ~WT~EEDe~L~~lV~ky---G~~---------nW~~IA~~l~----~gRt~kQCr~RW~n 68 (316)
.||+++++.|++++.+. |.. .|..|++.+. ...+..||+.||..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~ 60 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT 60 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 59999999999988554 111 2888887663 23455667776544
No 67
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=63.49 E-value=23 Score=35.20 Aligned_cols=50 Identities=26% Similarity=0.481 Sum_probs=39.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHh-CC---ChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 74 LKRGAFSPQEEELIIHLHSLL-GN---RWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 74 lkk~~WT~EED~~Llelv~~~-G~---kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
..-..||.-|...|+.+.+.. |. .-..|++.++||+..+|++.-..+..+
T Consensus 19 ~gp~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~r 72 (344)
T PF11035_consen 19 TGPAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGR 72 (344)
T ss_pred CCcccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHH
Confidence 334689999999999998765 54 457889999999999999876655544
No 68
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=58.72 E-value=11 Score=39.91 Aligned_cols=51 Identities=25% Similarity=0.348 Sum_probs=45.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 74 LKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 74 lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
...++|+.+|-++...+..+.|.+.+.|+..+|+|+..|||.+|..--++.
T Consensus 407 ~~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~eE~r~ 457 (584)
T KOG2009|consen 407 LETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKEEKRN 457 (584)
T ss_pred cccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhhhhcc
Confidence 345789999999999999999999999999999999999999997554443
No 69
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=57.71 E-value=3.6 Score=28.50 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccccccccccccc
Q 021164 29 EEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWIN 68 (316)
Q Consensus 29 EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n 68 (316)
+=|.+|+.++.+.+...|..||+.++ =+...|+.|+.+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~lg--lS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEELG--LSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHHT--S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHC--cCHHHHHHHHHH
Confidence 34889999999999888999999986 677888888654
No 70
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=57.40 E-value=17 Score=39.68 Aligned_cols=43 Identities=9% Similarity=0.191 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHH
Q 021164 76 RGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWN 118 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~ 118 (316)
...||+.|-.+.-+++-.|-++...|++.++++|-.+|-..|.
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYY 661 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYY 661 (907)
T ss_pred cccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHH
Confidence 4689999999999999999999999999999999999987654
No 71
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=57.29 E-value=22 Score=32.91 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHhhcc--C-CCCCHHHHHHHHHHHhH
Q 021164 78 AFSPQEEELIIHLHSLLGNRWSQIAAR--L-PGRTDNEIKNFWNSTIK 122 (316)
Q Consensus 78 ~WT~EED~~Llelv~~~G~kW~~IAk~--l-pgRT~~q~KnRW~~llr 122 (316)
.|++++|-+|+.+|.. |+.-..|++- | -.-|-..|..||..++-
T Consensus 1 rW~~~DDl~Li~av~~-~~~L~~v~~gvkFS~~fT~~Ei~~RW~~lly 47 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQ-TNDLESVHLGVKFSCKFTLQEIEERWYALLY 47 (199)
T ss_pred CCCchhhHHHHHHHHH-hcCHHHHHccCCcCCcCcHHHHHHHHHHHHc
Confidence 4999999999999865 6666666653 3 34588999999999873
No 72
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=55.86 E-value=15 Score=29.25 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCChHHhhccCCCCCHHHH
Q 021164 84 EELIIHLHSLLGNRWSQIAARLPGRTDNEI 113 (316)
Q Consensus 84 D~~Llelv~~~G~kW~~IAk~lpgRT~~q~ 113 (316)
|+.|..+....|..|..+|.+| |=|..+|
T Consensus 2 ~~~L~~la~~LG~~W~~Lar~L-gls~~~I 30 (83)
T cd08319 2 DRELNQLAQRLGPEWEQVLLDL-GLSQTDI 30 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 5678899999999999999998 6666655
No 73
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=55.06 E-value=5.2 Score=31.71 Aligned_cols=17 Identities=29% Similarity=0.772 Sum_probs=10.2
Q ss_pred CCCCCCCCCHHHHHHHH
Q 021164 72 PDLKRGAFSPQEEELII 88 (316)
Q Consensus 72 p~lkk~~WT~EED~~Ll 88 (316)
|....|-||+|+|+.|.
T Consensus 43 P~n~~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLR 59 (87)
T ss_dssp -TT-TT---HHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHH
Confidence 66778899999999993
No 74
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=53.05 E-value=29 Score=27.68 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 86 LIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 86 ~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
.++.++-..|-.+.+||+.+ |=|...|+++.+..+++-
T Consensus 117 ~ii~~~~~~g~s~~eIA~~l-~~s~~~v~~~~~~~~~kl 154 (158)
T TIGR02937 117 EVLVLRYLEGLSYKEIAEIL-GISVGTVKRRLKRARKKL 154 (158)
T ss_pred HHHhhHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 33344444578999999999 779999999888766553
No 75
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=50.64 E-value=22 Score=28.23 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCChHHhhccCCCCCHHHH
Q 021164 84 EELIIHLHSLLGNRWSQIAARLPGRTDNEI 113 (316)
Q Consensus 84 D~~Llelv~~~G~kW~~IAk~lpgRT~~q~ 113 (316)
|..|..+....|.+|.++|+.| |=+...|
T Consensus 4 d~~l~~ia~~LG~dW~~LA~eL-g~s~~dI 32 (84)
T cd08803 4 DIRMAIVADHLGLSWTELAREL-NFSVDEI 32 (84)
T ss_pred HHHHHHHHHHhhccHHHHHHHc-CCCHHHH
Confidence 6778888999999999999998 6666554
No 76
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=50.01 E-value=34 Score=28.86 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=28.1
Q ss_pred HHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 87 IIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 87 Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
++.+....|-.+.+||+.| |.+...|+.+....+++-.
T Consensus 136 vl~l~~~~~~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr 173 (182)
T PRK09652 136 AITLREIEGLSYEEIAEIM-GCPIGTVRSRIFRAREALR 173 (182)
T ss_pred HHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 3334344577999999999 8999999998876655433
No 77
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=49.71 E-value=33 Score=27.17 Aligned_cols=44 Identities=9% Similarity=0.085 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 82 QEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 82 EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
+.|.+|+.+..+.| -.+.+||+.+ |-+...|+.+.+.+.++..-
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~g~i 47 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEEGVI 47 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 56888999998887 4799999999 99999999999999887643
No 78
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=49.66 E-value=37 Score=26.44 Aligned_cols=39 Identities=15% Similarity=0.393 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCC--------ChHHhhccC--CC-CC--HHHHHHHHHHHhHh
Q 021164 85 ELIIHLHSLLGN--------RWSQIAARL--PG-RT--DNEIKNFWNSTIKK 123 (316)
Q Consensus 85 ~~Llelv~~~G~--------kW~~IAk~l--pg-RT--~~q~KnRW~~llrk 123 (316)
-.|..+|.+.|+ +|..||+.| +. -+ ..++|..|...|..
T Consensus 39 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~~ 90 (92)
T PF01388_consen 39 YKLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLLP 90 (92)
T ss_dssp HHHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhHh
Confidence 357788888884 699999987 21 22 36789988877643
No 79
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=48.59 E-value=7.5 Score=33.50 Aligned_cols=43 Identities=12% Similarity=0.249 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCC
Q 021164 29 EEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPD 73 (316)
Q Consensus 29 EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~ 73 (316)
+-|.+|+++.++.|...|+.||+.++ -+...|+.|+.+.....
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~lg--lS~~tV~~Ri~rL~~~G 51 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQFG--VSPGTIHVRVEKMKQAG 51 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 57999999999999989999999986 88899999998765544
No 80
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=47.78 E-value=19 Score=28.07 Aligned_cols=29 Identities=31% Similarity=0.704 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCChHHhhccCCCCCHHHH
Q 021164 84 EELIIHLHSLLGNRWSQIAARLPGRTDNEI 113 (316)
Q Consensus 84 D~~Llelv~~~G~kW~~IAk~lpgRT~~q~ 113 (316)
|..|..+.+..|.+|.++|+.| |=+..+|
T Consensus 4 ~~~l~~ia~~lG~dW~~LAr~L-g~~~~dI 32 (84)
T cd08317 4 DIRLADISNLLGSDWPQLAREL-GVSETDI 32 (84)
T ss_pred cchHHHHHHHHhhHHHHHHHHc-CCCHHHH
Confidence 5668888899999999999999 6665544
No 81
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=46.53 E-value=20 Score=26.66 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=22.5
Q ss_pred ChHHhhccCC-CCCHHHHHHHHHHHhHhh
Q 021164 97 RWSQIAARLP-GRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 97 kW~~IAk~lp-gRT~~q~KnRW~~llrk~ 124 (316)
-|..||..|. .-+...|+.||+.+....
T Consensus 28 aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~y 56 (85)
T PF10545_consen 28 AWQEIARELGKEFSVDDCKKRWKNLRDRY 56 (85)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 4999999984 367889999999887643
No 82
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=46.09 E-value=52 Score=21.46 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHh
Q 021164 83 EEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTI 121 (316)
Q Consensus 83 ED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~ll 121 (316)
++..++.++-..|-.+.+||+.+ |-+...|+.+.....
T Consensus 14 ~~~~~~~~~~~~~~~~~~ia~~~-~~s~~~i~~~~~~~~ 51 (55)
T cd06171 14 REREVILLRFGEGLSYEEIAEIL-GISRSTVRQRLHRAL 51 (55)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 44556666656778899999998 788888877665543
No 83
>PRK12523 RNA polymerase sigma factor; Reviewed
Probab=45.58 E-value=53 Score=28.09 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=30.4
Q ss_pred HHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhhhhcc
Q 021164 88 IHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNL 128 (316)
Q Consensus 88 lelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk~ 128 (316)
+.+....|-...+||+.+ |-+...|+.+....+++-....
T Consensus 128 ~~L~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~~~~~l 167 (172)
T PRK12523 128 FLYNRLDGMGHAEIAERL-GVSVSRVRQYLAQGLRQCYIAL 167 (172)
T ss_pred HHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHh
Confidence 333334577899999999 9999999999887777655443
No 84
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=45.56 E-value=5.9 Score=31.38 Aligned_cols=43 Identities=26% Similarity=0.524 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhC-------CCCcccccccccccc----ccccccccccccccC
Q 021164 30 EDDKLMNYMLKNG-------QGCWSDVARNAGLQR----CGKSCRLRWINYLRP 72 (316)
Q Consensus 30 EDe~L~~lV~kyG-------~~nW~~IA~~l~~gR----t~kQCr~RW~n~L~p 72 (316)
+=-+|..+|.+.| .+.|..||+.++..- ...+.+..|.++|-|
T Consensus 33 dL~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~ 86 (93)
T smart00501 33 DLYRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLP 86 (93)
T ss_pred cHHHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHH
Confidence 3456788888876 246999999987332 234556666666653
No 85
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=45.54 E-value=44 Score=26.34 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCC--------ChHHhhccC--C---CCCHHHHHHHHHHHhHhh
Q 021164 85 ELIIHLHSLLGN--------RWSQIAARL--P---GRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 85 ~~Llelv~~~G~--------kW~~IAk~l--p---gRT~~q~KnRW~~llrk~ 124 (316)
-.|..+|.+.|+ +|..||+.| + .....++|..|..+|..-
T Consensus 35 ~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~y 87 (93)
T smart00501 35 YRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLPF 87 (93)
T ss_pred HHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHHH
Confidence 457778888874 799999987 3 234678899998887654
No 86
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=44.18 E-value=25 Score=40.58 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=51.2
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHh-CCChHH
Q 021164 22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLL-GNRWSQ 100 (316)
Q Consensus 22 kKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~-G~kW~~ 100 (316)
.-.-|..+||.+|+-.|-+||.++|..|-. =| .-|... ...+....-.+.|-..+-..|+.+...+ +.+|..
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~-Dp-----~L~l~d-Ki~~~e~~P~a~~L~~R~~yLls~~~~~~~~~~~~ 1204 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRL-DP-----DLGLTD-KIFLVETVPQAKHLQRRADYLLSLLRKHDKGNTPK 1204 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhcc-Cc-----cccchh-hhcccccCCchHHHHHHHHHHHHHHhhcccCCCch
Confidence 345699999999999999999999999832 11 112111 1122222556777788888888888887 566665
Q ss_pred hhcc
Q 021164 101 IAAR 104 (316)
Q Consensus 101 IAk~ 104 (316)
..+.
T Consensus 1205 ~~~~ 1208 (1373)
T KOG0384|consen 1205 KLKR 1208 (1373)
T ss_pred hhhc
Confidence 5443
No 87
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=43.45 E-value=47 Score=27.86 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=25.1
Q ss_pred HhCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 93 LLGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 93 ~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
..|-.+.+||+.| |-|...|+++....+++-
T Consensus 139 ~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~l 169 (179)
T PRK11924 139 VEGLSYREIAEIL-GVPVGTVKSRLRRARQLL 169 (179)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3467899999999 999999999887665543
No 88
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=43.21 E-value=49 Score=29.09 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=26.8
Q ss_pred HHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 89 HLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 89 elv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
.+.-..|-...+||..+ |-+...|++|+...+++-
T Consensus 144 ~l~~~~g~s~~EIA~~l-g~s~~tV~~rl~rar~~L 178 (192)
T PRK09643 144 VAVDMQGYSVADAARML-GVAEGTVKSRCARGRARL 178 (192)
T ss_pred HHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 33334577899999999 999999999996555443
No 89
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=43.02 E-value=15 Score=37.37 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=40.5
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCccccccc-----ccccccccccccccccc
Q 021164 21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARN-----AGLQRCGKSCRLRWINY 69 (316)
Q Consensus 21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~-----l~~gRt~kQCr~RW~n~ 69 (316)
++-..||.+|-.-|.++.++|.-. |-.||.. .+..||....++||...
T Consensus 128 l~dn~WskeETD~LF~lck~fDLR-f~VIaDRyd~qq~~~sRTvEdLKeRyY~v 180 (445)
T KOG2656|consen 128 LNDNSWSKEETDYLFDLCKRFDLR-FFVIADRYDNQQYKKSRTVEDLKERYYSV 180 (445)
T ss_pred hccccccHHHHHHHHHHHHhcCee-EEEEeeccchhhccccccHHHHHHHHHHH
Confidence 344669999999999999999876 9999987 66459999999998743
No 90
>PRK04217 hypothetical protein; Provisional
Probab=42.91 E-value=50 Score=27.68 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 78 AFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 78 ~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
.-|++| ..++.++...|-...+||+.+ |-+...|+.+++...++-.
T Consensus 42 ~Lt~ee-reai~l~~~eGlS~~EIAk~L-GIS~sTV~r~L~RArkkLr 87 (110)
T PRK04217 42 FMTYEE-FEALRLVDYEGLTQEEAGKRM-GVSRGTVWRALTSARKKVA 87 (110)
T ss_pred cCCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 455555 677788777888999999999 9999999999987665543
No 91
>PF11427 HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C.
Probab=42.48 E-value=44 Score=24.32 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHH
Q 021164 81 PQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFW 117 (316)
Q Consensus 81 ~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW 117 (316)
.++|+..+.+..+.|-+=.+||+.+ ||+.+.|++.-
T Consensus 6 t~~Eqaqid~m~qlG~s~~~isr~i-~RSr~~Ir~yl 41 (50)
T PF11427_consen 6 TDAEQAQIDVMHQLGMSLREISRRI-GRSRTCIRRYL 41 (50)
T ss_dssp -HHHHHHHHHHHHTT--HHHHHHHH-T--HHHHHHHH
T ss_pred CHHHHHHHHHHHHhchhHHHHHHHh-CccHHHHHHHh
Confidence 3567778888899999999999999 99999887643
No 92
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=42.30 E-value=50 Score=29.15 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 83 EEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 83 ED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
+...++++..-.|-.+.+||+.+ |-|...|+.+|..+...
T Consensus 139 ~~~~~v~l~~~~Gls~~EIA~~l-giS~~tV~r~l~~aR~~ 178 (185)
T PF07638_consen 139 RQRRVVELRFFEGLSVEEIAERL-GISERTVRRRLRRARAW 178 (185)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34444555445678999999999 99999999999877644
No 93
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=42.00 E-value=8.5 Score=33.60 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCC
Q 021164 28 PEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDL 74 (316)
Q Consensus 28 ~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~l 74 (316)
.+-|.+|+.+.++.|...|++||+.++ -+...|+.|+.+..+..+
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lg--lS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVG--LSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 567999999999999988999999986 778889999987765543
No 94
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=41.76 E-value=31 Score=27.23 Aligned_cols=31 Identities=29% Similarity=0.531 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCChHHhhccCCCCCHHHHHH
Q 021164 84 EELIIHLHSLLGNRWSQIAARLPGRTDNEIKN 115 (316)
Q Consensus 84 D~~Llelv~~~G~kW~~IAk~lpgRT~~q~Kn 115 (316)
|..|..+....|.+|.++|+.| |=+...|.+
T Consensus 4 ~~~l~~ia~~LG~dWk~LAr~L-g~se~dI~~ 34 (84)
T cd08804 4 EERLAVIADHLGFSWTELAREL-DFTEEQIHQ 34 (84)
T ss_pred hhHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 5667788899999999999999 777776654
No 95
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=41.45 E-value=46 Score=33.84 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHhhc-cCCCCCHHHHHHHHHHHh
Q 021164 77 GAFSPQEEELIIHLHSLLGNRWSQIAA-RLPGRTDNEIKNFWNSTI 121 (316)
Q Consensus 77 ~~WT~EED~~Llelv~~~G~kW~~IAk-~lpgRT~~q~KnRW~~ll 121 (316)
..|+++|=...-+.++.||++...|.. +++.|+--.|-..|....
T Consensus 278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlWK 323 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLWK 323 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHhh
Confidence 379999999999999999999999966 689999999988775443
No 96
>PRK12512 RNA polymerase sigma factor; Provisional
Probab=41.20 E-value=64 Score=27.80 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=27.0
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
.|-...+||..| |-+...|+.+....+++-...
T Consensus 146 ~g~s~~eIA~~l-~is~~tV~~~l~ra~~~Lr~~ 178 (184)
T PRK12512 146 EGASIKETAAKL-SMSEGAVRVALHRGLAALAAK 178 (184)
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHH
Confidence 467899999999 999999999988777665444
No 97
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=40.91 E-value=33 Score=27.04 Aligned_cols=27 Identities=33% Similarity=0.623 Sum_probs=21.1
Q ss_pred HHHHHHHhCCChHHhhccCCCCCHHHHH
Q 021164 87 IIHLHSLLGNRWSQIAARLPGRTDNEIK 114 (316)
Q Consensus 87 Llelv~~~G~kW~~IAk~lpgRT~~q~K 114 (316)
|..+....|.+|.++|+.| |-+..+|.
T Consensus 10 l~~ia~~iG~~Wk~Lar~L-Gls~~dI~ 36 (86)
T cd08318 10 ITVFANKLGEDWKTLAPHL-EMKDKEIR 36 (86)
T ss_pred HHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 3346678899999999999 77777663
No 98
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=40.07 E-value=61 Score=28.53 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHhhccCC----CCCHHHHHHHHHHH
Q 021164 75 KRGAFSPQEEELIIHLHSLLGNRWSQIAARLP----GRTDNEIKNFWNST 120 (316)
Q Consensus 75 kk~~WT~EED~~Llelv~~~G~kW~~IAk~lp----gRT~~q~KnRW~~l 120 (316)
....-|+.|..-|..|+.+||.++..+|.-.. =.|..||+.+....
T Consensus 113 ~~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~ 162 (164)
T PF09420_consen 113 KPRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKY 162 (164)
T ss_pred CCCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHh
Confidence 44578999999999999999999999997542 38999999887654
No 99
>PRK09641 RNA polymerase sigma factor SigW; Provisional
Probab=39.82 E-value=58 Score=27.87 Aligned_cols=30 Identities=10% Similarity=-0.051 Sum_probs=24.7
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
.|..+.+||..+ |-|...|+++....+++-
T Consensus 151 ~~~s~~eIA~~l-gis~~~v~~~l~Rar~~L 180 (187)
T PRK09641 151 EDLSLKEISEIL-DLPVGTVKTRIHRGREAL 180 (187)
T ss_pred hCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 467899999999 999999999887666543
No 100
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=38.85 E-value=18 Score=32.14 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccc
Q 021164 25 LWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLR 65 (316)
Q Consensus 25 ~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~R 65 (316)
.||.|+.++|.++..+--. =.+||+.|+ +.+...+.-+
T Consensus 2 ~Wtde~~~~L~~lw~~G~S--asqIA~~lg-~vsRnAViGk 39 (162)
T PF07750_consen 2 SWTDERVERLRKLWAEGLS--ASQIARQLG-GVSRNAVIGK 39 (162)
T ss_pred CCCHHHHHHHHHHHHcCCC--HHHHHHHhC-Ccchhhhhhh
Confidence 4999999999999866433 489999998 4444444333
No 101
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=36.89 E-value=81 Score=26.25 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=24.9
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
.|-.-.+||..| |-+...|++|....+++-
T Consensus 121 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 150 (161)
T PRK09047 121 EDMDVAETAAAM-GCSEGSVKTHCSRATHAL 150 (161)
T ss_pred hcCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 467899999999 999999999987666544
No 102
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.
Probab=36.82 E-value=54 Score=28.15 Aligned_cols=32 Identities=9% Similarity=-0.007 Sum_probs=25.7
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
.|-...+||..+ |=|...|+++....+++-.+
T Consensus 153 ~~~s~~EIA~~l-gis~~tv~~~l~rar~~Lr~ 184 (190)
T TIGR02939 153 EGLSYEDIARIM-DCPVGTVRSRIFRAREAIAI 184 (190)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 366899999999 88999999998777665443
No 103
>cd08311 Death_p75NR Death domain of p75 Neurotophin Receptor. Death Domain (DD) found in p75 neurotrophin receptor (p75NTR, NGFR, TNFRSF16). p75NTR binds members of the neurotrophin (NT) family including nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and NT3, among others. It contains an NT-binding extracellular region that bears four cysteine-rich repeats, a transmembrane domain, and an intracellular DD. p75NTR plays roles in the immune, vascular, and nervous systems, and has been shown to promote cell death or survival, and to induce neurite outgrowth or collapse depending on its ligands and co-receptors. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptor
Probab=36.62 E-value=31 Score=26.98 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHH
Q 021164 81 PQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKN 115 (316)
Q Consensus 81 ~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~Kn 115 (316)
+||-++|+..- ..|.+|..+|..| |=+...|++
T Consensus 2 ~~~v~~ll~~~-nlG~dW~~LA~~L-G~~~~~I~~ 34 (77)
T cd08311 2 QEEVEKLLESG-RPGRDWRSLAGEL-GYEDEAIDT 34 (77)
T ss_pred hHHHHHHHhCC-CCccCHHHHHHHc-CCCHHHHHH
Confidence 57888888432 5688999999999 777777755
No 104
>PRK12531 RNA polymerase sigma factor; Provisional
Probab=36.40 E-value=72 Score=27.96 Aligned_cols=32 Identities=13% Similarity=0.006 Sum_probs=25.8
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
.|-...+||..| |-+...|+.|....+++-.+
T Consensus 156 eg~s~~EIA~~l-gis~~tVk~rl~ra~~~Lr~ 187 (194)
T PRK12531 156 EELPHQQVAEMF-DIPLGTVKSRLRLAVEKLRH 187 (194)
T ss_pred cCCCHHHHHHHh-CcCHHHHHHHHHHHHHHHHH
Confidence 467889999999 99999999998776665443
No 105
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=36.24 E-value=91 Score=31.09 Aligned_cols=86 Identities=14% Similarity=0.301 Sum_probs=62.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCCC---CccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHH-h----
Q 021164 23 KGLWSPEEDDKLMNYMLKNGQG---CWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSL-L---- 94 (316)
Q Consensus 23 Kg~WT~EEDe~L~~lV~kyG~~---nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~-~---- 94 (316)
-..||..|...|+++......+ +-.+|++.++ +|+..++++ +.+.|+ +..+.+++++ |
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~-~Rs~aEI~~-fl~~LK------------~rvareaiqkv~~~g~ 86 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELP-GRSEAEIRD-FLQQLK------------GRVAREAIQKVHPGGL 86 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhcc-CcCHHHHHH-HHHHHH------------HHHHHHHHHHhccccc
Confidence 4579999999999988766333 3457788888 999988876 344443 2344555554 2
Q ss_pred -CC------------ChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164 95 -GN------------RWSQIAARLPGRTDNEIKNFWNSTIK 122 (316)
Q Consensus 95 -G~------------kW~~IAk~lpgRT~~q~KnRW~~llr 122 (316)
|. -|..+|+.+.|.-...+-.-|-..|-
T Consensus 87 ~~~R~~e~q~paPIEvW~dla~k~tg~~ee~~t~afsq~l~ 127 (344)
T PF11035_consen 87 KGPRRREAQPPAPIEVWMDLAEKVTGPLEEALTAAFSQVLT 127 (344)
T ss_pred ccccccccCCCccHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 21 49999999999999999888877664
No 106
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=36.11 E-value=92 Score=26.94 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=28.4
Q ss_pred HhCCChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 93 LLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 93 ~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
..|-...+||..| |-+...||.|....+++-...
T Consensus 141 ~~g~s~~EIA~~l-gis~~tVk~~l~rAl~~~~~~ 174 (178)
T PRK12529 141 LDGMKQKDIAQAL-DIALPTVKKYIHQAYVTCLSL 174 (178)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHh
Confidence 3477899999999 999999999998877766554
No 107
>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Probab=35.83 E-value=74 Score=26.98 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=25.0
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
.|-+..+||..+ |-|...|+++....+++-.
T Consensus 134 ~g~s~~eiA~~l-gis~~tv~~~l~Ra~~~Lr 164 (169)
T TIGR02954 134 HDLTIKEIAEVM-NKPEGTVKTYLHRALKKLK 164 (169)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 466889999999 8899999999877766543
No 108
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=35.05 E-value=41 Score=26.75 Aligned_cols=30 Identities=33% Similarity=0.608 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCChHHhhccCCCCCHHHHHH
Q 021164 85 ELIIHLHSLLGNRWSQIAARLPGRTDNEIKN 115 (316)
Q Consensus 85 ~~Llelv~~~G~kW~~IAk~lpgRT~~q~Kn 115 (316)
+.|-.+....|.+|..+|+.| |=++.+|..
T Consensus 3 ~~l~~l~~~lG~~Wk~lar~L-G~s~~eI~~ 32 (86)
T cd08777 3 KHLDLLRENLGKKWKRCARKL-GFTESEIEE 32 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 345556678899999999999 778777755
No 109
>PRK09637 RNA polymerase sigma factor SigZ; Provisional
Probab=34.79 E-value=78 Score=27.62 Aligned_cols=32 Identities=25% Similarity=0.112 Sum_probs=25.7
Q ss_pred HhCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 93 LLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 93 ~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
..|-+..+||..| |-+...|+++....+++-.
T Consensus 120 ~~g~~~~EIA~~l-gis~~tV~~~l~Rar~~Lr 151 (181)
T PRK09637 120 LEGLSQKEIAEKL-GLSLSGAKSRVQRGRVKLK 151 (181)
T ss_pred hcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Confidence 3477899999999 9999999999876665433
No 110
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=34.72 E-value=25 Score=37.38 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=44.3
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccc
Q 021164 16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWIN 68 (316)
Q Consensus 16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n 68 (316)
.-.++...++|+.+|-++...+....|.. .+.||..++ +|..+|++..+..
T Consensus 402 t~sk~~~~~~w~~se~e~fyka~~~~gs~-~slis~l~p-~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 402 TYSKKLETDKWDASETELFYKALSERGSD-FSLISNLFP-LRDRKQIKAKFKK 452 (584)
T ss_pred hccCccccCcccchhhHHhhhHHhhhccc-ccccccccc-cccHHHHHHHHhh
Confidence 34566778999999999999999999976 999999888 9999999988754
No 111
>TIGR02943 Sig70_famx1 RNA polymerase sigma-70 factor, TIGR02943 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=34.64 E-value=86 Score=27.50 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=25.9
Q ss_pred HhCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 93 LLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 93 ~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
..|-+..+||..| |-|...|+.|....+++-.
T Consensus 145 ~~g~s~~EIA~~l-gis~~tvk~rl~Rar~~Lr 176 (188)
T TIGR02943 145 VLGFESDEICQEL-EISTSNCHVLLYRARLSLR 176 (188)
T ss_pred HhCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Confidence 3467899999999 9999999999877665543
No 112
>PRK09648 RNA polymerase sigma factor SigD; Reviewed
Probab=34.40 E-value=87 Score=27.12 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=25.4
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
.|-...+||..| |-+...|+.+....+++-.
T Consensus 154 ~g~s~~EIA~~l-gis~~tV~~~l~Ra~~~Lr 184 (189)
T PRK09648 154 VGLSAEETAEAV-GSTPGAVRVAQHRALARLR 184 (189)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 467899999999 9999999999877665544
No 113
>TIGR02948 SigW_bacill RNA polymerase sigma-W factor. This sigma factor is restricted to certain lineages of the order Bacillales.
Probab=34.24 E-value=73 Score=27.23 Aligned_cols=30 Identities=10% Similarity=-0.044 Sum_probs=24.4
Q ss_pred CCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 95 GNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 95 G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
|-...+||..| |-|...|+++....+++-.
T Consensus 152 g~s~~eIA~~l-gis~~~v~~~l~Rar~~Lr 181 (187)
T TIGR02948 152 DLSLKEISEIL-DLPVGTVKTRIHRGREALR 181 (187)
T ss_pred CCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 66789999999 8899999999876665543
No 114
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=34.12 E-value=88 Score=26.57 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=25.6
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
.|-.-.+||+.| |.+...|+.|....+++-.+
T Consensus 133 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr~ 164 (173)
T PRK09645 133 RGWSTAQIAADL-GIPEGTVKSRLHYALRALRL 164 (173)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 467789999999 99999999998766655443
No 115
>PRK09646 RNA polymerase sigma factor SigK; Reviewed
Probab=33.89 E-value=92 Score=27.29 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=25.5
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
.|-...+||+.| |-+...||++-...+++-.+.
T Consensus 157 ~~~s~~EIA~~L-gis~~tVk~~l~ra~~~Lr~~ 189 (194)
T PRK09646 157 GGLTYREVAERL-AVPLGTVKTRMRDGLIRLRDC 189 (194)
T ss_pred cCCCHHHHHHHh-CCChHhHHHHHHHHHHHHHHH
Confidence 356789999999 889999999877666554443
No 116
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=33.85 E-value=93 Score=26.03 Aligned_cols=31 Identities=13% Similarity=-0.028 Sum_probs=25.0
Q ss_pred HhCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 93 LLGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 93 ~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
..|-.-.+||+.+ |-+...|++|....+++-
T Consensus 120 ~~g~s~~EIA~~l-gis~~tV~~~l~Rar~~L 150 (160)
T PRK09642 120 LEEKSYQEIALQE-KIEVKTVEMKLYRARKWI 150 (160)
T ss_pred HhCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3467889999999 999999999987665543
No 117
>PRK12530 RNA polymerase sigma factor; Provisional
Probab=33.54 E-value=87 Score=27.41 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=24.3
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
.|-...+||..| |-|...||.|....+++
T Consensus 149 ~g~s~~EIA~~l-gis~~tVk~~l~RAr~~ 177 (189)
T PRK12530 149 LELSSEQICQEC-DISTSNLHVLLYRARLQ 177 (189)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 467899999999 99999999997766554
No 118
>PRK12515 RNA polymerase sigma factor; Provisional
Probab=32.69 E-value=95 Score=26.94 Aligned_cols=31 Identities=13% Similarity=0.075 Sum_probs=25.2
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
.|-...+||..| |-|...|+++....+++-.
T Consensus 146 ~~~s~~eIA~~l-gis~~tV~~~l~Rar~~Lr 176 (189)
T PRK12515 146 HEKSVEEVGEIV-GIPESTVKTRMFYARKKLA 176 (189)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 467899999999 8899999999876665433
No 119
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=32.47 E-value=51 Score=26.27 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCCChHHhhccCCCCCH
Q 021164 84 EELIIHLHSLLGNRWSQIAARLPGRTD 110 (316)
Q Consensus 84 D~~Llelv~~~G~kW~~IAk~lpgRT~ 110 (316)
|..|..+....|.+|.++|+.| |=+.
T Consensus 4 ~~~l~~Ia~~LG~dW~~Lar~L-~vs~ 29 (84)
T cd08805 4 EMKMAVIREHLGLSWAELAREL-QFSV 29 (84)
T ss_pred hhHHHHHHHHhcchHHHHHHHc-CCCH
Confidence 5677888899999999999988 4333
No 120
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=32.43 E-value=81 Score=26.36 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhCC-ChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 81 PQEEELIIHLHSLLGN-RWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 81 ~EED~~Llelv~~~G~-kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
.+-|.+||++.++-|. .+..||+.+ |-|...|++|-+.+.+...-
T Consensus 7 D~~D~~IL~~L~~d~r~~~~eia~~l-glS~~~v~~Ri~~L~~~GiI 52 (154)
T COG1522 7 DDIDRRILRLLQEDARISNAELAERV-GLSPSTVLRRIKRLEEEGVI 52 (154)
T ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCce
Confidence 3568889999888884 699999999 99999999999999887643
No 121
>PRK12524 RNA polymerase sigma factor; Provisional
Probab=32.09 E-value=95 Score=27.25 Aligned_cols=32 Identities=9% Similarity=0.020 Sum_probs=25.2
Q ss_pred HhCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 93 LLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 93 ~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
..|-.+.+||+.| |-+...|+++....+++-.
T Consensus 150 ~~g~s~~eIA~~l-gis~~tV~~~l~Ra~~~Lr 181 (196)
T PRK12524 150 IEGLSNPEIAEVM-EIGVEAVESLTARGKRALA 181 (196)
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 3467899999999 8899999998876655443
No 122
>TIGR02952 Sig70_famx2 RNA polymerase sigma-70 factor, TIGR02952 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in a limited number of Gram-positive bacterial lineages.
Probab=31.68 E-value=1e+02 Score=25.81 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=24.1
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
.|-+..+||+.| |-+...|+.+....+++-
T Consensus 137 ~g~s~~eIA~~l-~is~~tv~~~l~ra~~~L 166 (170)
T TIGR02952 137 QNLPIAEVARIL-GKTEGAVKILQFRAIKKL 166 (170)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 366889999999 999999999887666543
No 123
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=31.57 E-value=40 Score=23.20 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHH
Q 021164 77 GAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKN 115 (316)
Q Consensus 77 ~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~Kn 115 (316)
..+|.+|-..|..++ +-|..=.+||+.| ||+...|.+
T Consensus 3 ~~Lt~~eR~~I~~l~-~~G~s~~~IA~~l-g~s~sTV~r 39 (44)
T PF13936_consen 3 KHLTPEERNQIEALL-EQGMSIREIAKRL-GRSRSTVSR 39 (44)
T ss_dssp ---------HHHHHH-CS---HHHHHHHT-T--HHHHHH
T ss_pred cchhhhHHHHHHHHH-HcCCCHHHHHHHH-CcCcHHHHH
Confidence 356777777776664 5688889999999 999988855
No 124
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=31.28 E-value=50 Score=25.15 Aligned_cols=30 Identities=30% Similarity=0.605 Sum_probs=21.7
Q ss_pred HHHHHHHHHHH-hCCChHHhhccCCCCCHHHH
Q 021164 83 EEELIIHLHSL-LGNRWSQIAARLPGRTDNEI 113 (316)
Q Consensus 83 ED~~Llelv~~-~G~kW~~IAk~lpgRT~~q~ 113 (316)
-.+.|..++.. .|.+|..+|+.| |-+..+|
T Consensus 4 ~~~~~~~l~~~~~g~~W~~la~~L-g~~~~~i 34 (88)
T smart00005 4 TREKLAKLLDHPLGLDWRELARKL-GLSEADI 34 (88)
T ss_pred HHHHHHHHHcCccchHHHHHHHHc-CCCHHHH
Confidence 34566666666 899999999999 4455544
No 125
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=31.19 E-value=91 Score=27.05 Aligned_cols=28 Identities=11% Similarity=0.105 Sum_probs=23.1
Q ss_pred CCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 95 GNRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 95 G~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
|-...+||..+ |-|...|++|....+++
T Consensus 154 g~s~~eIA~~l-gis~~tv~~~l~Rar~~ 181 (193)
T PRK11923 154 GLSYEDIASVM-QCPVGTVRSRIFRAREA 181 (193)
T ss_pred CCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 56789999999 88999999998766554
No 126
>PRK13919 putative RNA polymerase sigma E protein; Provisional
Probab=31.03 E-value=1.1e+02 Score=26.28 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=25.6
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
.|-+-.+||..+ |-|...|+.+....+++-.+
T Consensus 150 ~~~s~~eIA~~l-gis~~~V~~~l~ra~~~Lr~ 181 (186)
T PRK13919 150 QGYTHREAAQLL-GLPLGTLKTRARRALSRLKE 181 (186)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 356789999999 99999999998777665443
No 127
>PRK12516 RNA polymerase sigma factor; Provisional
Probab=31.01 E-value=1.1e+02 Score=27.01 Aligned_cols=35 Identities=20% Similarity=0.122 Sum_probs=26.6
Q ss_pred HHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 90 LHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 90 lv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
|....|-...+||+.| |-+...||.|....+++-.
T Consensus 127 L~~~~g~s~~EIA~~L-gis~~tVk~~l~Rar~~Lr 161 (187)
T PRK12516 127 LVGASGFAYEEAAEIC-GCAVGTIKSRVNRARQRLQ 161 (187)
T ss_pred HHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 3333477899999999 9999999999776655443
No 128
>PRK12536 RNA polymerase sigma factor; Provisional
Probab=30.79 E-value=1.1e+02 Score=26.49 Aligned_cols=33 Identities=18% Similarity=0.115 Sum_probs=26.7
Q ss_pred HhCCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 93 LLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 93 ~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
..|-+..+||+.| |.+...|+++....+++-.+
T Consensus 143 ~~g~s~~EIA~~l-~is~~tV~~~l~rar~~Lr~ 175 (181)
T PRK12536 143 LEGLSVAETAQLT-GLSESAVKVGIHRGLKALAA 175 (181)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 3477899999999 99999999998776665443
No 129
>TIGR02983 SigE-fam_strep RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Probab=30.76 E-value=1.1e+02 Score=25.47 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 84 EELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 84 D~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
+..++.+.-..|-+-.+||..| |-+...|+++....+++-.+.
T Consensus 115 ~r~i~~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~~ 157 (162)
T TIGR02983 115 QRAVVVLRYYEDLSEAQVAEAL-GISVGTVKSRLSRALARLREL 157 (162)
T ss_pred HHHHhhhHHHhcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHH
Confidence 3334444444567789999999 999999999988777655443
No 130
>PRK06759 RNA polymerase factor sigma-70; Validated
Probab=30.67 E-value=1.1e+02 Score=25.18 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=23.6
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
.|-...+||+.+ |-+...|+++-...+++-
T Consensus 121 ~~~s~~EIA~~l-~is~~tV~~~~~ra~~~L 150 (154)
T PRK06759 121 VGKTMGEIALET-EMTYYQVRWIYRQALEKM 150 (154)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 356789999999 999999999877665543
No 131
>PRK12527 RNA polymerase sigma factor; Reviewed
Probab=29.75 E-value=1.2e+02 Score=25.46 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=25.4
Q ss_pred HhCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 93 LLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 93 ~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
..|-.-.+||..| |-+...|+.|....+++-.
T Consensus 119 ~~~~s~~eIA~~l-gis~~tv~~~l~ra~~~Lr 150 (159)
T PRK12527 119 LEGLSHQQIAEHL-GISRSLVEKHIVNAMKHCR 150 (159)
T ss_pred HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Confidence 3466789999999 9999999999876665543
No 132
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=29.59 E-value=90 Score=21.11 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHH
Q 021164 83 EEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFW 117 (316)
Q Consensus 83 ED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW 117 (316)
|-+.|.++.+.+|++..+.|+.| |=+...+..|-
T Consensus 6 E~~~i~~aL~~~~gn~~~aA~~L-gisr~tL~~kl 39 (42)
T PF02954_consen 6 EKQLIRQALERCGGNVSKAARLL-GISRRTLYRKL 39 (42)
T ss_dssp HHHHHHHHHHHTTT-HHHHHHHH-TS-HHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH-CCCHHHHHHHH
Confidence 67888999999999999999998 66666665543
No 133
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=29.56 E-value=51 Score=26.06 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCChHHhhccC
Q 021164 85 ELIIHLHSLLGNRWSQIAARL 105 (316)
Q Consensus 85 ~~Llelv~~~G~kW~~IAk~l 105 (316)
..|..+....|.+|..+|++|
T Consensus 3 ~~l~~ia~~LG~~Wk~lar~L 23 (86)
T cd08779 3 SNLLSIAGRLGLDWQAIGLHL 23 (86)
T ss_pred hHHHHHHHHHhHHHHHHHHHc
Confidence 458889999999999999998
No 134
>PF05734 DUF832: Herpesvirus protein of unknown function (DUF832); InterPro: IPR008550 This entry contains BRRF2 from Epstein-Barr virus. This protein family is restricted to the gammaherpesvirus's; it's function is not known. The protein is phosphorylated and is associated with the viral tegument [].
Probab=29.53 E-value=23 Score=33.49 Aligned_cols=23 Identities=30% Similarity=0.720 Sum_probs=20.4
Q ss_pred cccccccchHHHhhhCCCCcccc
Q 021164 288 EIKLGEWDFEELMKDVSSFPYLD 310 (316)
Q Consensus 288 ~~~~g~w~~~~~~~~~~~~~~~~ 310 (316)
...+-+|++.+||.|..-||++|
T Consensus 168 ~~~vs~~~l~~L~~~p~~~~~~~ 190 (228)
T PF05734_consen 168 SVSVSEFDLRDLVPDPDEFPDFD 190 (228)
T ss_pred CCCcchhhHHHHccCchhccCCC
Confidence 34567899999999999999998
No 135
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=29.52 E-value=1e+02 Score=26.81 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=26.3
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
.|-...+||+.| |-+...|+.|....+++-.+
T Consensus 145 ~g~s~~EIA~~l-gis~~tVk~~l~Rar~~Lr~ 176 (185)
T PRK09649 145 LGLSYADAAAVC-GCPVGTIRSRVARARDALLA 176 (185)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHh
Confidence 466789999999 99999999998777665544
No 136
>TIGR02999 Sig-70_X6 RNA polymerase sigma factor, TIGR02999 family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found in a variety of species including Rhodopirellula baltica which encodes a paralogous group of five.
Probab=28.76 E-value=1.2e+02 Score=25.81 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=25.3
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
.|-...+||..+ |-+...|+.|....+++-.
T Consensus 149 ~g~s~~EIA~~l-gis~~tVk~~l~Rar~~Lr 179 (183)
T TIGR02999 149 AGLTVEEIAELL-GVSVRTVERDWRFARAWLA 179 (183)
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Confidence 467899999999 9999999999876665443
No 137
>PRK00118 putative DNA-binding protein; Validated
Probab=28.50 E-value=1.3e+02 Score=24.89 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 81 PQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 81 ~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
++.+..++.++...|-...+||+.+ |-|...|+.+.....++
T Consensus 19 ~ekqRevl~L~y~eg~S~~EIAe~l-GIS~~TV~r~L~RArkk 60 (104)
T PRK00118 19 TEKQRNYMELYYLDDYSLGEIAEEF-NVSRQAVYDNIKRTEKL 60 (104)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4566777788888899999999999 99999998887655443
No 138
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=28.18 E-value=1.3e+02 Score=25.40 Aligned_cols=33 Identities=18% Similarity=0.101 Sum_probs=26.3
Q ss_pred HhCCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 93 LLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 93 ~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
..|-...+||..+ |-+...|+++-...+++-..
T Consensus 126 ~~g~s~~eIA~~l-gis~~tV~~~l~Rar~~Lr~ 158 (164)
T PRK12547 126 ASGFSYEDAAAIC-GCAVGTIKSRVSRARNRLQE 158 (164)
T ss_pred HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHH
Confidence 3467889999999 99999999998777665443
No 139
>PRK12528 RNA polymerase sigma factor; Provisional
Probab=28.04 E-value=1.2e+02 Score=25.41 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=24.8
Q ss_pred HhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 93 LLGNRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 93 ~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
-.|-+..+||+.+ |-+...|+.|....+++
T Consensus 127 ~~g~s~~EIA~~l-~is~~tV~~~l~ra~~~ 156 (161)
T PRK12528 127 VDGLGYGEIATEL-GISLATVKRYLNKAAMR 156 (161)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3477899999999 99999999998776554
No 140
>PRK05602 RNA polymerase sigma factor; Reviewed
Probab=28.02 E-value=1.1e+02 Score=26.48 Aligned_cols=32 Identities=9% Similarity=0.014 Sum_probs=24.7
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
.|-...+||+.+ |-+...|+.+....+++-.+
T Consensus 143 ~g~s~~EIA~~l-gis~~tV~~~l~Rar~~Lr~ 174 (186)
T PRK05602 143 QGLSNIEAAAVM-DISVDALESLLARGRRALRA 174 (186)
T ss_pred cCCCHHHHHHHh-CcCHHHHHHHHHHHHHHHHH
Confidence 466789999999 89999999987766554433
No 141
>PRK12514 RNA polymerase sigma factor; Provisional
Probab=27.77 E-value=1.3e+02 Score=25.81 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=24.5
Q ss_pred CCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 95 GNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 95 G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
|-.-.+||+.| |.|...|+.+....+++-.
T Consensus 145 g~s~~eIA~~l-gis~~tV~~~l~Rar~~Lr 174 (179)
T PRK12514 145 GLSYKELAERH-DVPLNTMRTWLRRSLLKLR 174 (179)
T ss_pred CCCHHHHHHHH-CCChHHHHHHHHHHHHHHH
Confidence 66789999999 9999999999876665443
No 142
>PRK12532 RNA polymerase sigma factor; Provisional
Probab=27.68 E-value=1.2e+02 Score=26.47 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=24.2
Q ss_pred HhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 93 LLGNRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 93 ~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
..|-.-.+||+.| |-|...|+.|....+++
T Consensus 150 ~~g~s~~EIA~~l-gis~~tVk~~l~Rar~~ 179 (195)
T PRK12532 150 ILGFSSDEIQQMC-GISTSNYHTIMHRARES 179 (195)
T ss_pred HhCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467889999999 99999999988765544
No 143
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=27.35 E-value=1.9e+02 Score=24.20 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccc-cc----cCCCCCCCCCHHHHHHHHHHHHHhCCChHH
Q 021164 26 WSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWIN-YL----RPDLKRGAFSPQEEELIIHLHSLLGNRWSQ 100 (316)
Q Consensus 26 WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n-~L----~p~lkk~~WT~EED~~Llelv~~~G~kW~~ 100 (316)
=|++-+++|.++-.+.|-..|..+|+..- .|+-..=. ++.. -+ .-.+++..|+-|-+.....+++++-
T Consensus 4 lS~~~~~~L~~Lk~~tgi~~~Nil~R~A~-~~SL~~~~-~~~~~~~~~d~g~e~~~~t~~Ge~~~~~~~ll~q~~----- 76 (113)
T PF08870_consen 4 LSKKAKEQLKKLKRRTGITPWNILCRIAF-CRSLEEPS-IPSDEDIKDDSGLELNWKTFTGEYDDIYEALLKQRY----- 76 (113)
T ss_pred cCHHHHHHHHHHHHhcCCCcccHHHHHHH-HHHHccCC-CCCCCccCCCCCeEEeeeeecCchHHHHHHHHHHHh-----
Confidence 36788899999999999999998887542 22222111 1111 11 1125667899888888888776643
Q ss_pred hhccCCCCCHHHHHHHHHHHhHhhhhccCC
Q 021164 101 IAARLPGRTDNEIKNFWNSTIKKRLKNLSS 130 (316)
Q Consensus 101 IAk~lpgRT~~q~KnRW~~llrk~~kk~~~ 130 (316)
-++-++..+...|+..+.+.......
T Consensus 77 ----g~~~d~~~l~~~~~~Hl~rGi~~L~~ 102 (113)
T PF08870_consen 77 ----GPELDDEELPKYFKLHLDRGIEYLSN 102 (113)
T ss_pred ----CCCCCHHHHHHHHHHHHHHhHHHHhc
Confidence 13568999999999999988775543
No 144
>PRK09651 RNA polymerase sigma factor FecI; Provisional
Probab=27.30 E-value=96 Score=26.60 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=25.0
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
.|-+..+||+.+ |-+...|++|....+++-
T Consensus 134 ~g~s~~EIA~~l-gis~~tV~~~l~Ra~~~~ 163 (172)
T PRK09651 134 DGLTYSEIAHKL-GVSVSSVKKYVAKATEHC 163 (172)
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 366899999999 999999999987766553
No 145
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=27.18 E-value=1.1e+02 Score=28.88 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=26.5
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
.|-+-.+||+.| |.+...||+|....+++-.+.
T Consensus 157 ~g~s~~EIA~~l-gis~~tV~~~l~Rar~~Lr~~ 189 (324)
T TIGR02960 157 LGWRAAETAELL-GTSTASVNSALQRARATLDEV 189 (324)
T ss_pred hCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHh
Confidence 466889999999 999999999987666654443
No 146
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=26.59 E-value=1.3e+02 Score=29.56 Aligned_cols=55 Identities=18% Similarity=0.325 Sum_probs=31.3
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHH
Q 021164 24 GLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSL 93 (316)
Q Consensus 24 g~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~ 93 (316)
.+||.|+-..|++.+.+++.. .-| ..| +...--|.+| +.+++++|-+.|.+|++.
T Consensus 10 ~PWs~e~R~~l~~f~~~~kmN--~Yi--YAP--KdDpyhr~~W---------re~Yp~~el~~l~~L~~~ 64 (306)
T PF07555_consen 10 RPWSHEDRLDLIRFLGRYKMN--TYI--YAP--KDDPYHRSKW---------REPYPEEELAELKELADA 64 (306)
T ss_dssp S---HHHHHHHHHHHHHTT----EEE--E----TT-TTTTTTT---------TS---HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCc--eEE--ECC--CCChHHHhhh---------cccCCHHHHHHHHHHHHH
Confidence 489999999999999999976 222 223 4444455566 346777777777777654
No 147
>PRK12520 RNA polymerase sigma factor; Provisional
Probab=25.55 E-value=1.5e+02 Score=25.78 Aligned_cols=30 Identities=13% Similarity=-0.015 Sum_probs=24.4
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
.|-.-.+||..| |-+...|++|....+++-
T Consensus 146 ~g~s~~EIA~~l-gis~~tV~~~l~Rar~~L 175 (191)
T PRK12520 146 LELETEEICQEL-QITATNAWVLLYRARMRL 175 (191)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 366789999999 999999999987665543
No 148
>PRK06811 RNA polymerase factor sigma-70; Validated
Probab=25.44 E-value=1.5e+02 Score=25.75 Aligned_cols=30 Identities=33% Similarity=0.387 Sum_probs=24.0
Q ss_pred CCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 95 GNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 95 G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
|-.-.+||+.+ |.|...|++|-...+++-.
T Consensus 147 g~s~~EIAe~l-gis~~~V~~~l~Ra~~~Lr 176 (189)
T PRK06811 147 GEKIEEIAKKL-GLTRSAIDNRLSRGRKKLQ 176 (189)
T ss_pred cCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 56779999999 9999999999776665533
No 149
>PRK12545 RNA polymerase sigma factor; Provisional
Probab=25.28 E-value=1.4e+02 Score=26.35 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=23.5
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
.|-.-.+||..+ |.+...||.|....+++
T Consensus 154 eg~s~~EIA~~l-gis~~tVk~~l~RAr~~ 182 (201)
T PRK12545 154 LDFEIDDICTEL-TLTANHCSVLLYRARTR 182 (201)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 356889999999 99999999987655544
No 150
>TIGR02984 Sig-70_plancto1 RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are apparently found only in the Planctomycetaceae family including the genuses Gemmata and Pirellula (in which seven sequences are found).
Probab=25.09 E-value=1.5e+02 Score=25.24 Aligned_cols=31 Identities=16% Similarity=0.472 Sum_probs=24.9
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
.|-...+||..+ |-|...|+.+....+++-.
T Consensus 155 ~g~s~~eIA~~l-gis~~~v~~~l~Ra~~~Lr 185 (189)
T TIGR02984 155 EGLSFAEVAERM-DRSEGAVSMLWVRGLARLR 185 (189)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 467889999999 9999999998876665543
No 151
>TIGR02950 SigM_subfam RNA polymerase sigma factor, SigM family. This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot: SIGM_BACSU) and is activated by various stressors.
Probab=24.42 E-value=56 Score=27.00 Aligned_cols=29 Identities=17% Similarity=0.084 Sum_probs=24.2
Q ss_pred CCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 95 GNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 95 G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
|-.+.+||..| |=+...|+++.....++-
T Consensus 121 g~s~~eIA~~l-gis~~tv~~~l~Ra~~~L 149 (154)
T TIGR02950 121 EFSYKEIAELL-NLSLAKVKSNLFRARKEL 149 (154)
T ss_pred cCcHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 45799999999 999999999987766554
No 152
>PRK12542 RNA polymerase sigma factor; Provisional
Probab=24.17 E-value=1.6e+02 Score=25.38 Aligned_cols=32 Identities=13% Similarity=0.312 Sum_probs=25.5
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
.|-+..+||..| |-|...|++|....+++-.+
T Consensus 137 ~g~s~~EIA~~l-gis~~tVk~~l~Rar~~Lr~ 168 (185)
T PRK12542 137 YNLTYQEISSVM-GITEANVRKQFERARKRVQN 168 (185)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 467889999999 99999999988766655433
No 153
>COG2963 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=23.76 E-value=1.8e+02 Score=23.47 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHhhccCCCC-CHHHHHHHHHHHhHh
Q 021164 76 RGAFSPQEEELIIHLHSLLGNRWSQIAARLPGR-TDNEIKNFWNSTIKK 123 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~G~kW~~IAk~lpgR-T~~q~KnRW~~llrk 123 (316)
+..||+|.-..+++++.+-|..=+.||+.+ |- ..++++ +|...++.
T Consensus 5 ~r~~s~EfK~~iv~~~~~~g~sv~~vAr~~-gv~~~~~l~-~W~~~~~~ 51 (116)
T COG2963 5 RKKYSPEFKLEAVALYLRGGDTVSEVAREF-GIVSATQLY-KWRIQLQK 51 (116)
T ss_pred cccCCHHHHHHHHHHHHhcCccHHHHHHHh-CCCChHHHH-HHHHHHHH
Confidence 568999999999999999998889999999 76 555554 45544443
No 154
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=23.02 E-value=1.3e+02 Score=24.90 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=31.4
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 021164 22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYL 70 (316)
Q Consensus 22 kKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L 70 (316)
++..||.|+-..++..+...|.. -..||+.++. + .+-..+|.+.+
T Consensus 9 ~rr~ys~EfK~~aV~~~~~~g~s-v~evA~e~gI--s-~~tl~~W~r~y 53 (121)
T PRK09413 9 KRRRRTTQEKIAIVQQSFEPGMT-VSLVARQHGV--A-ASQLFLWRKQY 53 (121)
T ss_pred CCCCCCHHHHHHHHHHHHcCCCC-HHHHHHHHCc--C-HHHHHHHHHHH
Confidence 35679999988888877777643 6788888874 3 33345676654
No 155
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=22.68 E-value=1.1e+02 Score=24.14 Aligned_cols=27 Identities=22% Similarity=0.551 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChHHhhccCCCCCHHHHH
Q 021164 87 IIHLHSLLGNRWSQIAARLPGRTDNEIK 114 (316)
Q Consensus 87 Llelv~~~G~kW~~IAk~lpgRT~~q~K 114 (316)
+--+.+..|.+|.++|+.| |=|+.+|.
T Consensus 5 f~~i~~~lG~~Wk~laR~L-Glse~~Id 31 (86)
T cd08306 5 FDVICENVGRDWRKLARKL-GLSETKIE 31 (86)
T ss_pred HHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 3344566799999999998 66666654
No 156
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=22.68 E-value=2e+02 Score=27.04 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=26.2
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
.|-.-.+||+.+ |.|...||.+....+++-.+.
T Consensus 130 ~g~s~~EIA~~l-g~s~~tVk~~l~RAr~~Lr~~ 162 (293)
T PRK09636 130 FGVPFDEIASTL-GRSPAACRQLASRARKHVRAA 162 (293)
T ss_pred hCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHhh
Confidence 466789999999 999999999987666554443
No 157
>PRK01905 DNA-binding protein Fis; Provisional
Probab=22.60 E-value=1.8e+02 Score=22.31 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHH
Q 021164 81 PQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFW 117 (316)
Q Consensus 81 ~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW 117 (316)
.-|...|.+++..+|.++.+.|+.+ |=+...++.+.
T Consensus 36 ~~E~~~i~~aL~~~~gn~s~aAr~L-GIsrstL~rkl 71 (77)
T PRK01905 36 CVEKPLLEVVMEQAGGNQSLAAEYL-GINRNTLRKKL 71 (77)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHH
Confidence 3477789999999999999999988 65666555443
No 158
>PRK11922 RNA polymerase sigma factor; Provisional
Probab=22.51 E-value=91 Score=28.34 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=24.8
Q ss_pred CCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 95 GNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 95 G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
|-...+||..| |.|...|++++...+++-.+
T Consensus 165 g~s~~EIAe~l-gis~~tVk~~l~Rar~kLr~ 195 (231)
T PRK11922 165 ELSVEETAQAL-GLPEETVKTRLHRARRLLRE 195 (231)
T ss_pred CCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 56789999999 99999999998766655443
No 159
>PRK09638 RNA polymerase sigma factor SigY; Reviewed
Probab=22.11 E-value=79 Score=26.87 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=25.0
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
+|-+..+||..| |-+...|+.+....+++-.+
T Consensus 141 ~g~s~~eIA~~l-~is~~~V~~~l~ra~~~l~~ 172 (176)
T PRK09638 141 YGYTYEEIAKML-NIPEGTVKSRVHHGIKQLRK 172 (176)
T ss_pred cCCCHHHHHHHH-CCChhHHHHHHHHHHHHHHH
Confidence 467899999999 88999999887766655443
No 160
>PRK12546 RNA polymerase sigma factor; Provisional
Probab=21.92 E-value=1.7e+02 Score=25.86 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=26.3
Q ss_pred HhCCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 93 LLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 93 ~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
..|-...+||..| |-|...|+++....+++-.+
T Consensus 127 ~~g~s~~EIA~~L-giS~~tVk~~l~Rar~~Lr~ 159 (188)
T PRK12546 127 ASGFSYEEAAEMC-GVAVGTVKSRANRARARLAE 159 (188)
T ss_pred hcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 3577899999999 89999999988766655443
No 161
>PRK12537 RNA polymerase sigma factor; Provisional
Probab=21.59 E-value=1.9e+02 Score=24.87 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=24.8
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
.|-.-.+||+.+ |-|...|+++....+++-.
T Consensus 148 ~~~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr 178 (182)
T PRK12537 148 DGCSHAEIAQRL-GAPLGTVKAWIKRSLKALR 178 (182)
T ss_pred cCCCHHHHHHHH-CCChhhHHHHHHHHHHHHH
Confidence 466789999999 9999999999887766543
No 162
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=21.53 E-value=62 Score=34.90 Aligned_cols=46 Identities=13% Similarity=0.362 Sum_probs=34.2
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCcccccc----------ccccccccccccccccccc
Q 021164 23 KGLWSPEEDDKLMNYMLKNGQGCWSDVAR----------NAGLQRCGKSCRLRWINYL 70 (316)
Q Consensus 23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~----------~l~~gRt~kQCr~RW~n~L 70 (316)
|..||-.|.+.+..+++++|. ++..|-. .+. -+|-.|+|.+|.+.+
T Consensus 88 ktaWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~-~Ktkdqvr~~yY~~~ 143 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQ-SKTKDQVRHYYYRLV 143 (782)
T ss_pred ccccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchh-hhhhHHHHHHHHHHH
Confidence 667999999999999999995 4877721 222 456677888776544
No 163
>PRK09647 RNA polymerase sigma factor SigE; Reviewed
Probab=21.44 E-value=1.9e+02 Score=25.80 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=25.4
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
.|-+-.+||+.| |-+...|+++....+++-.+
T Consensus 153 ~g~s~~EIA~~L-gis~~tV~~~l~RArk~Lr~ 184 (203)
T PRK09647 153 EGLSYEEIAATL-GVKLGTVRSRIHRGRQQLRA 184 (203)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 366789999999 99999999998776655443
No 164
>PRK06986 fliA flagellar biosynthesis sigma factor; Validated
Probab=21.40 E-value=1.7e+02 Score=26.67 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=26.2
Q ss_pred HhCCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 93 LLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 93 ~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
..|-...+||+.+ |-|...|+.+....+++-.+
T Consensus 198 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~Lr~ 230 (236)
T PRK06986 198 QEELNLKEIGAVL-GVSESRVSQIHSQAIKRLRA 230 (236)
T ss_pred ccCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 3466899999999 99999999988776665443
No 165
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=21.20 E-value=1.2e+02 Score=31.01 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=42.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC----------------ChHHhhccC-----CCCCHHHHHHHHHHHhHhhhhcc
Q 021164 74 LKRGAFSPQEEELIIHLHSLLGN----------------RWSQIAARL-----PGRTDNEIKNFWNSTIKKRLKNL 128 (316)
Q Consensus 74 lkk~~WT~EED~~Llelv~~~G~----------------kW~~IAk~l-----pgRT~~q~KnRW~~llrk~~kk~ 128 (316)
..-|.|+++=|+...++...|.. +=..||+++ ..||.+||-.+-..+.|++.+..
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~rei 149 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREI 149 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 44578999999999999998742 346777754 45899999999888887766543
No 166
>PRK12519 RNA polymerase sigma factor; Provisional
Probab=21.04 E-value=1.6e+02 Score=25.54 Aligned_cols=30 Identities=30% Similarity=0.195 Sum_probs=23.2
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
.|-.-.+||..| |-|...|+.+....+++-
T Consensus 156 ~g~s~~EIA~~l-gis~~tV~~~l~Ra~~~L 185 (194)
T PRK12519 156 EGLSQSEIAKRL-GIPLGTVKARARQGLLKL 185 (194)
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 356788999999 889999998876655543
No 167
>PRK09639 RNA polymerase sigma factor SigX; Provisional
Probab=20.96 E-value=2e+02 Score=23.97 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=26.3
Q ss_pred HHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 87 IIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 87 Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
++.++- .|-.-.+||..| |-|...|+++....+++-
T Consensus 120 il~l~~-~g~s~~eIA~~l-gis~~tV~~~i~ra~~~L 155 (166)
T PRK09639 120 VLLLRF-SGYSYKEIAEAL-GIKESSVGTTLARAKKKF 155 (166)
T ss_pred HHHHHH-cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 333444 566789999999 999999999887665543
No 168
>PF06583 Neogenin_C: Neogenin C-terminus; InterPro: IPR010560 This entry represents the C terminus of eukaryotic neogenin precursor proteins, which contains several potential phosphorylation sites []. Neogenin is a member of the N-CAM family of cell adhesion molecules (and therefore contains multiple copies of IPR007110 from INTERPRO and IPR003961 from INTERPRO) and is closely related to the DCC tumour suppressor gene product - these proteins may play an integral role in regulating differentiation programmes and/or cell migration events within many adult and embryonic tissues [].; GO: 0016021 integral to membrane; PDB: 3AU4_B.
Probab=20.64 E-value=37 Score=33.62 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=14.4
Q ss_pred cccccccccccccchHHHhhhCC
Q 021164 282 NLLQGEEIKLGEWDFEELMKDVS 304 (316)
Q Consensus 282 ~~~~~~~~~~g~w~~~~~~~~~~ 304 (316)
.-+..|+|.--==.|||||||+.
T Consensus 292 ~systeeL~qEMAnLEGLMKDLn 314 (319)
T PF06583_consen 292 PSYSTEELNQEMANLEGLMKDLN 314 (319)
T ss_dssp -HHH---HHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHH
Confidence 35667777655568999999974
No 169
>PF12884 TORC_N: Transducer of regulated CREB activity, N terminus; InterPro: IPR024783 This entry represents the N-terminal domain of TORC proteins. TORC (transducer of regulated CREB activity) is a protein family of coactivators that enhances the activity of CRE-dependent transcription via a phosphorylation-independent interaction with the bZIP DNA binding/dimerisation domain of CREB (cAMP Response Element-Binding) []. The proteins display a highly conserved predicted N-terminal coiled-coil domain and an invariant sequence matching a protein kinase A (PKA) phosphorylation consensus sequence (RKXS) []. The coiled-coil structure interacts with the bZIP domain of CREB []. This interaction may occur via ionic bonds because it is disrupted under high-salt conditions []. In addition to CREB-binding, the N-terminal domain plays a role in the tetramer formation of TORCs [], but the physiological function of the multimeric complex has not been clarified yet.; GO: 0008140 cAMP response element binding protein binding, 0051289 protein homotetramerization
Probab=20.42 E-value=32 Score=26.66 Aligned_cols=11 Identities=73% Similarity=1.050 Sum_probs=9.6
Q ss_pred chHHHhhhCCC
Q 021164 295 DFEELMKDVSS 305 (316)
Q Consensus 295 ~~~~~~~~~~~ 305 (316)
.||++|+||++
T Consensus 22 aFE~iM~ev~~ 32 (67)
T PF12884_consen 22 AFEEIMKEVSS 32 (67)
T ss_pred HHHHHHHHHHH
Confidence 58999999985
No 170
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=20.42 E-value=99 Score=22.91 Aligned_cols=26 Identities=38% Similarity=0.739 Sum_probs=18.6
Q ss_pred HHHHHHHhCCChHHhhccCCCCCHHHH
Q 021164 87 IIHLHSLLGNRWSQIAARLPGRTDNEI 113 (316)
Q Consensus 87 Llelv~~~G~kW~~IAk~lpgRT~~q~ 113 (316)
+..+....|.+|..+|+.+ |=+..+|
T Consensus 2 ~~~ia~~lg~~W~~la~~L-gl~~~~I 27 (79)
T cd01670 2 LDKLAKKLGKDWKKLARKL-GLSDGEI 27 (79)
T ss_pred HHHHHHHHhhHHHHHHHHh-CCCHHHH
Confidence 3456678899999999998 4444433
No 171
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=20.26 E-value=2e+02 Score=26.17 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 78 AFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 78 ~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
..|+.|-+. ++++.+ |....+||+.| +-+...||++...+++|-
T Consensus 155 ~Lt~rE~~V-l~l~~~-G~s~~eIA~~L-~iS~~TVk~~~~~i~~Kl 198 (216)
T PRK10100 155 LLTHREKEI-LNKLRI-GASNNEIARSL-FISENTVKTHLYNLFKKI 198 (216)
T ss_pred CCCHHHHHH-HHHHHc-CCCHHHHHHHh-CCCHHHHHHHHHHHHHHh
Confidence 477655554 555555 99999999999 899999999988887763
No 172
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=20.20 E-value=1.8e+02 Score=26.17 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 78 AFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 78 ~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
..|+-|-+.|.-+.+ |...++||+.| +-|...|+++-+.+++|-
T Consensus 137 ~LT~RE~eVL~lla~--G~snkeIA~~L-~iS~~TVk~h~~~I~~KL 180 (207)
T PRK15411 137 SLSRTESSMLRMWMA--GQGTIQISDQM-NIKAKTVSSHKGNIKRKI 180 (207)
T ss_pred cCCHHHHHHHHHHHc--CCCHHHHHHHc-CCCHHHHHHHHHHHHHHh
Confidence 478887766554443 77889999999 899999999988887764
Done!