Query 021164
Match_columns 316
No_of_seqs 203 out of 1387
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 13:41:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 8.2E-35 2.8E-39 235.6 9.3 103 21-124 2-104 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 7.7E-35 2.6E-39 237.5 8.6 105 23-128 1-105 (107)
3 3zqc_A MYB3; transcription-DNA 100.0 6.6E-34 2.3E-38 239.6 11.4 106 23-129 2-107 (131)
4 3osg_A MYB21; transcription-DN 100.0 8.1E-34 2.8E-38 237.8 9.8 107 16-124 4-110 (126)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 6.4E-34 2.2E-38 238.4 8.6 109 15-124 19-127 (128)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 9.9E-32 3.4E-36 232.4 8.6 108 16-124 51-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 2.1E-30 7.2E-35 224.1 5.7 104 20-124 3-107 (159)
8 2dim_A Cell division cycle 5-l 99.9 8.8E-23 3E-27 154.6 2.9 67 17-84 3-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 2.2E-21 7.6E-26 162.1 5.6 75 49-124 1-76 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 1.3E-19 4.4E-24 166.6 6.7 106 18-124 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 8.8E-19 3E-23 134.8 4.8 60 62-122 9-68 (73)
12 2juh_A Telomere binding protei 99.7 1.9E-18 6.6E-23 144.6 3.9 86 14-100 8-103 (121)
13 2din_A Cell division cycle 5-l 99.7 1.5E-17 5.2E-22 124.4 7.0 62 68-130 1-62 (66)
14 2d9a_A B-MYB, MYB-related prot 99.7 5.1E-18 1.7E-22 124.6 3.4 57 18-75 3-59 (60)
15 1gvd_A MYB proto-oncogene prot 99.7 5.9E-18 2E-22 120.9 2.8 52 21-73 1-52 (52)
16 2roh_A RTBP1, telomere binding 99.7 2E-17 6.8E-22 138.7 5.6 83 14-97 22-114 (122)
17 2cu7_A KIAA1915 protein; nucle 99.7 8.2E-17 2.8E-21 122.5 8.2 58 70-127 3-60 (72)
18 1guu_A C-MYB, MYB proto-oncoge 99.7 1.1E-17 3.9E-22 119.3 1.9 52 21-73 1-52 (52)
19 1ity_A TRF1; helix-turn-helix, 99.7 2.3E-17 8E-22 124.5 3.1 65 16-80 3-68 (69)
20 2d9a_A B-MYB, MYB-related prot 99.6 1.7E-16 5.8E-21 116.5 5.4 55 71-125 3-58 (60)
21 3sjm_A Telomeric repeat-bindin 99.6 7.1E-17 2.4E-21 120.9 1.8 57 19-75 7-64 (64)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 6.4E-16 2.2E-20 110.2 6.0 50 74-123 1-51 (52)
23 1x41_A Transcriptional adaptor 99.6 2.6E-16 8.8E-21 115.9 3.1 56 18-74 3-58 (60)
24 1gvd_A MYB proto-oncogene prot 99.6 1.4E-15 4.9E-20 108.5 5.9 50 74-123 1-51 (52)
25 1ity_A TRF1; helix-turn-helix, 99.6 2.8E-15 9.4E-20 113.1 7.4 59 69-127 3-64 (69)
26 1w0t_A Telomeric repeat bindin 99.6 2.4E-15 8.1E-20 108.0 6.2 49 75-123 1-52 (53)
27 2din_A Cell division cycle 5-l 99.6 1.5E-16 5.2E-21 118.9 -0.3 60 16-78 2-61 (66)
28 2dim_A Cell division cycle 5-l 99.6 2.1E-15 7.3E-20 113.9 5.5 57 71-127 4-61 (70)
29 1x41_A Transcriptional adaptor 99.6 3E-15 1E-19 110.2 5.9 53 71-123 3-56 (60)
30 2elk_A SPCC24B10.08C protein; 99.6 9E-16 3.1E-20 112.4 2.6 52 19-70 5-56 (58)
31 2yum_A ZZZ3 protein, zinc fing 99.5 8.5E-16 2.9E-20 117.5 1.3 61 18-79 3-68 (75)
32 2yum_A ZZZ3 protein, zinc fing 99.5 6.8E-15 2.3E-19 112.4 6.3 57 71-127 3-65 (75)
33 3sjm_A Telomeric repeat-bindin 99.5 1E-14 3.5E-19 109.2 6.4 52 74-125 9-63 (64)
34 1w0t_A Telomeric repeat bindin 99.5 2E-15 6.7E-20 108.4 1.7 50 22-71 1-51 (53)
35 2cu7_A KIAA1915 protein; nucle 99.5 1.9E-15 6.6E-20 114.9 0.7 59 16-76 2-60 (72)
36 2elk_A SPCC24B10.08C protein; 99.5 2.3E-14 7.8E-19 105.0 6.2 51 71-121 4-56 (58)
37 2ltp_A Nuclear receptor corepr 99.2 2E-15 7E-20 119.6 0.0 56 69-124 9-64 (89)
38 2aje_A Telomere repeat-binding 99.4 3.6E-14 1.2E-18 116.1 4.3 83 14-96 4-95 (105)
39 2cqr_A RSGI RUH-043, DNAJ homo 99.4 2.1E-13 7.3E-18 104.7 5.8 51 72-122 14-68 (73)
40 2ckx_A NGTRF1, telomere bindin 99.4 1.6E-13 5.3E-18 107.9 4.1 69 24-93 1-79 (83)
41 3zqc_A MYB3; transcription-DNA 99.4 6.9E-14 2.3E-18 117.3 2.1 84 16-105 47-130 (131)
42 2llk_A Cyclin-D-binding MYB-li 99.4 1.3E-13 4.4E-18 106.0 2.7 58 14-75 14-71 (73)
43 1x58_A Hypothetical protein 49 99.4 8.3E-13 2.9E-17 98.4 6.3 51 74-124 6-59 (62)
44 2yus_A SWI/SNF-related matrix- 99.4 1.8E-13 6.1E-18 106.5 2.5 51 17-69 12-62 (79)
45 2yus_A SWI/SNF-related matrix- 99.3 4.9E-13 1.7E-17 104.0 4.4 48 73-120 15-62 (79)
46 3osg_A MYB21; transcription-DN 99.3 1.2E-12 4.1E-17 109.1 6.5 55 71-125 6-60 (126)
47 2ckx_A NGTRF1, telomere bindin 99.3 2.2E-12 7.6E-17 101.3 7.5 49 77-125 1-54 (83)
48 1gv2_A C-MYB, MYB proto-oncoge 99.3 1.2E-12 4E-17 105.4 5.5 51 73-123 1-52 (105)
49 2aje_A Telomere repeat-binding 99.3 3.9E-12 1.3E-16 104.0 8.5 55 71-125 8-67 (105)
50 2cqr_A RSGI RUH-043, DNAJ homo 99.3 7.7E-13 2.6E-17 101.6 2.4 55 16-71 11-68 (73)
51 2ltp_A Nuclear receptor corepr 98.9 3E-13 1E-17 107.1 0.0 57 14-72 7-63 (89)
52 2juh_A Telomere binding protei 99.3 7.8E-12 2.7E-16 104.6 7.6 56 70-125 11-71 (121)
53 1ign_A Protein (RAP1); RAP1,ye 99.2 3.7E-12 1.3E-16 117.2 4.8 55 72-126 4-64 (246)
54 2k9n_A MYB24; R2R3 domain, DNA 99.2 7E-12 2.4E-16 101.6 5.2 49 76-124 1-50 (107)
55 2cjj_A Radialis; plant develop 99.2 1.6E-11 5.5E-16 98.3 6.1 51 75-125 7-61 (93)
56 2roh_A RTBP1, telomere binding 99.2 3.4E-11 1.2E-15 100.8 8.1 55 71-125 26-85 (122)
57 3hm5_A DNA methyltransferase 1 99.0 2.5E-10 8.4E-15 91.5 6.1 65 60-128 18-87 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.0 5.6E-10 1.9E-14 82.3 6.3 48 75-122 11-58 (61)
59 2cjj_A Radialis; plant develop 99.0 6.5E-11 2.2E-15 94.8 0.9 48 22-70 7-57 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.8 4.6E-09 1.6E-13 80.3 5.7 50 73-123 5-58 (72)
61 2iw5_B Protein corest, REST co 98.8 4.5E-09 1.5E-13 96.1 5.2 49 75-123 132-180 (235)
62 1x58_A Hypothetical protein 49 98.7 3.1E-09 1E-13 79.1 1.8 48 22-71 7-57 (62)
63 2eqr_A N-COR1, N-COR, nuclear 98.7 6E-09 2.1E-13 76.8 3.3 50 18-69 7-56 (61)
64 1wgx_A KIAA1903 protein; MYB D 98.6 7.3E-08 2.5E-12 74.0 5.9 48 76-123 8-59 (73)
65 2xag_B REST corepressor 1; ami 98.5 5.6E-08 1.9E-12 97.4 4.8 46 77-122 381-426 (482)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.5 2.2E-08 7.7E-13 76.4 0.8 49 21-71 6-57 (72)
67 1fex_A TRF2-interacting telome 98.4 5.5E-08 1.9E-12 71.5 1.2 48 23-71 2-58 (59)
68 1fex_A TRF2-interacting telome 98.4 2.7E-07 9.3E-12 67.8 4.7 47 76-122 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.4 9.7E-08 3.3E-12 73.2 1.6 49 23-72 8-59 (73)
70 2yqk_A Arginine-glutamic acid 98.2 3E-06 1E-10 62.8 6.6 49 71-119 4-53 (63)
71 1ug2_A 2610100B20RIK gene prod 98.2 2.7E-06 9.1E-11 67.7 6.6 52 77-128 34-88 (95)
72 2iw5_B Protein corest, REST co 98.2 5.4E-07 1.9E-11 82.4 2.4 49 21-71 131-179 (235)
73 4iej_A DNA methyltransferase 1 98.1 5.4E-06 1.8E-10 66.3 6.1 61 64-128 22-87 (93)
74 4eef_G F-HB80.4, designed hema 98.0 1E-06 3.5E-11 67.6 0.6 44 23-67 20-66 (74)
75 1ofc_X ISWI protein; nuclear p 98.0 1.3E-05 4.3E-10 76.4 8.0 99 24-123 111-275 (304)
76 4eef_G F-HB80.4, designed hema 98.0 1.6E-06 5.4E-11 66.5 1.3 44 75-118 19-66 (74)
77 2lr8_A CAsp8-associated protei 97.2 9.8E-07 3.4E-11 66.7 0.0 48 78-126 16-66 (70)
78 4a69_C Nuclear receptor corepr 97.7 4.5E-05 1.5E-09 60.7 5.7 45 76-120 43-87 (94)
79 2crg_A Metastasis associated p 97.7 6.5E-05 2.2E-09 56.7 6.2 44 76-119 8-52 (70)
80 2yqk_A Arginine-glutamic acid 97.7 1.9E-05 6.5E-10 58.4 2.9 50 16-67 2-52 (63)
81 2ebi_A DNA binding protein GT- 97.4 0.00016 5.4E-09 55.9 4.9 53 76-128 4-70 (86)
82 2xag_B REST corepressor 1; ami 97.3 8.6E-05 2.9E-09 74.5 2.2 47 21-69 378-424 (482)
83 3hm5_A DNA methyltransferase 1 97.2 9.5E-05 3.3E-09 59.0 1.8 48 22-70 29-80 (93)
84 4b4c_A Chromodomain-helicase-D 97.0 0.0016 5.6E-08 57.5 7.4 103 20-123 4-196 (211)
85 4a69_C Nuclear receptor corepr 96.9 0.00026 9E-09 56.3 1.7 43 23-67 43-85 (94)
86 2ebi_A DNA binding protein GT- 96.8 0.00011 3.9E-09 56.8 -1.1 50 21-70 2-63 (86)
87 2crg_A Metastasis associated p 96.8 0.00042 1.4E-08 52.2 1.8 44 22-67 7-51 (70)
88 2lr8_A CAsp8-associated protei 95.6 0.00033 1.1E-08 52.9 0.0 46 24-71 15-62 (70)
89 2y9y_A Imitation switch protei 96.6 0.006 2E-07 59.5 8.5 103 24-127 124-295 (374)
90 1ug2_A 2610100B20RIK gene prod 96.5 0.0017 5.7E-08 51.7 3.3 48 22-70 32-81 (95)
91 1irz_A ARR10-B; helix-turn-hel 94.9 0.07 2.4E-06 39.7 6.5 48 74-121 5-57 (64)
92 4iej_A DNA methyltransferase 1 93.6 0.026 8.9E-07 44.9 1.9 49 21-70 28-80 (93)
93 1ofc_X ISWI protein; nuclear p 92.2 0.25 8.5E-06 46.9 6.6 48 76-123 110-158 (304)
94 4b4c_A Chromodomain-helicase-D 90.7 0.29 1E-05 42.8 5.2 53 74-126 5-62 (211)
95 1irz_A ARR10-B; helix-turn-hel 89.1 0.18 6.3E-06 37.4 2.1 51 19-69 3-56 (64)
96 2xb0_X Chromo domain-containin 88.8 0.2 6.9E-06 46.7 2.7 28 24-51 169-196 (270)
97 2xb0_X Chromo domain-containin 76.4 5.6 0.00019 36.9 7.0 48 76-123 3-55 (270)
98 2eqy_A RBP2 like, jumonji, at 72.3 11 0.00038 30.5 7.1 42 85-126 45-98 (122)
99 2o8x_A Probable RNA polymerase 66.9 6.5 0.00022 27.2 4.0 44 82-126 18-61 (70)
100 2rq5_A Protein jumonji; develo 65.5 1.7 5.7E-05 35.8 0.7 57 33-92 46-113 (121)
101 1ku3_A Sigma factor SIGA; heli 61.5 9.3 0.00032 27.2 4.1 43 82-125 13-59 (73)
102 2k27_A Paired box protein PAX- 60.1 54 0.0018 26.4 9.1 93 23-120 23-135 (159)
103 2cxy_A BAF250B subunit, HBAF25 58.5 20 0.0007 29.0 6.1 42 85-126 54-107 (125)
104 2p7v_B Sigma-70, RNA polymeras 57.5 9.1 0.00031 26.9 3.4 43 82-125 8-54 (68)
105 2li6_A SWI/SNF chromatin-remod 56.4 2.2 7.4E-05 34.4 -0.2 39 33-72 53-98 (116)
106 2li6_A SWI/SNF chromatin-remod 54.8 8.4 0.00029 30.9 3.1 39 86-124 53-99 (116)
107 2lm1_A Lysine-specific demethy 54.0 18 0.00063 28.2 4.9 41 85-125 47-99 (107)
108 1ig6_A MRF-2, modulator recogn 53.1 3.3 0.00011 32.7 0.4 42 32-73 36-88 (107)
109 3hug_A RNA polymerase sigma fa 53.0 16 0.00055 27.1 4.3 42 82-124 40-81 (92)
110 2jrz_A Histone demethylase jar 52.8 16 0.00054 29.3 4.4 40 85-124 43-94 (117)
111 2jrz_A Histone demethylase jar 50.4 2.9 9.8E-05 33.8 -0.4 41 32-72 43-93 (117)
112 1x3u_A Transcriptional regulat 46.0 30 0.001 24.4 4.6 42 79-123 17-58 (79)
113 1c20_A DEAD ringer protein; DN 44.4 28 0.00095 28.2 4.7 43 84-126 54-109 (128)
114 1kkx_A Transcription regulator 44.2 30 0.001 28.1 4.8 42 86-127 52-101 (123)
115 1or7_A Sigma-24, RNA polymeras 43.0 33 0.0011 27.9 5.1 32 94-126 155-186 (194)
116 3c57_A Two component transcrip 42.8 31 0.0011 26.0 4.5 45 78-125 27-71 (95)
117 2eqy_A RBP2 like, jumonji, at 42.3 4.6 0.00016 32.9 -0.4 41 32-72 45-95 (122)
118 2q1z_A RPOE, ECF SIGE; ECF sig 41.9 22 0.00074 28.9 3.7 32 93-125 149-180 (184)
119 1c20_A DEAD ringer protein; DN 41.7 3.4 0.00012 33.8 -1.3 41 32-72 55-106 (128)
120 3i4p_A Transcriptional regulat 41.4 19 0.00066 29.7 3.4 45 82-127 3-48 (162)
121 2yqf_A Ankyrin-1; death domain 41.4 33 0.0011 26.9 4.6 35 80-115 14-48 (111)
122 2rq5_A Protein jumonji; develo 41.3 26 0.00088 28.6 4.0 75 23-123 7-96 (121)
123 2y9y_A Imitation switch protei 41.3 46 0.0016 32.3 6.4 49 76-125 123-173 (374)
124 1tty_A Sigma-A, RNA polymerase 41.1 30 0.001 25.5 4.1 43 82-125 21-67 (87)
125 2cxy_A BAF250B subunit, HBAF25 40.8 3.6 0.00012 33.6 -1.3 41 32-72 54-104 (125)
126 3cz6_A DNA-binding protein RAP 39.8 22 0.00074 30.9 3.5 24 19-42 110-141 (168)
127 1fse_A GERE; helix-turn-helix 39.5 33 0.0011 23.7 3.9 45 77-124 10-54 (74)
128 1je8_A Nitrate/nitrite respons 39.5 34 0.0012 25.0 4.2 44 78-124 21-64 (82)
129 3ulq_B Transcriptional regulat 39.3 50 0.0017 24.8 5.2 46 75-123 26-71 (90)
130 2jpc_A SSRB; DNA binding prote 38.6 53 0.0018 21.9 4.8 39 84-124 3-41 (61)
131 2kk0_A AT-rich interactive dom 37.7 38 0.0013 28.1 4.6 43 85-127 67-122 (145)
132 1u78_A TC3 transposase, transp 37.2 1.4E+02 0.0047 22.9 7.7 88 24-117 5-100 (141)
133 2jxj_A Histone demethylase jar 36.4 16 0.00055 28.0 1.9 38 86-123 40-89 (96)
134 2dbb_A Putative HTH-type trans 36.3 54 0.0019 26.2 5.3 45 82-127 9-54 (151)
135 1k78_A Paired box protein PAX5 36.1 89 0.003 24.7 6.5 78 23-105 30-118 (149)
136 1xsv_A Hypothetical UPF0122 pr 35.6 49 0.0017 25.9 4.8 41 82-123 28-68 (113)
137 2kk0_A AT-rich interactive dom 35.1 5.8 0.0002 33.3 -0.9 53 32-84 67-132 (145)
138 2rnj_A Response regulator prot 34.7 38 0.0013 25.0 3.8 44 78-124 29-72 (91)
139 3mzy_A RNA polymerase sigma-H 33.8 44 0.0015 26.0 4.3 30 94-124 123-152 (164)
140 1rp3_A RNA polymerase sigma fa 33.6 54 0.0018 27.4 5.0 42 83-125 191-232 (239)
141 2lfw_A PHYR sigma-like domain; 33.0 45 0.0015 26.9 4.3 45 82-127 96-140 (157)
142 2of5_H Leucine-rich repeat and 32.9 34 0.0012 27.2 3.5 31 84-115 13-43 (118)
143 1ig6_A MRF-2, modulator recogn 32.2 25 0.00084 27.5 2.4 40 85-124 36-88 (107)
144 2o71_A Death domain-containing 32.1 44 0.0015 26.7 4.0 28 86-114 26-53 (115)
145 2e1c_A Putative HTH-type trans 31.8 49 0.0017 27.7 4.4 46 81-127 26-72 (171)
146 1wxp_A THO complex subunit 1; 30.5 57 0.0019 25.5 4.3 31 84-115 18-48 (110)
147 2of5_A Death domain-containing 30.4 42 0.0014 26.9 3.6 40 71-114 14-53 (114)
148 3cz6_A DNA-binding protein RAP 30.0 40 0.0014 29.2 3.6 28 61-88 98-126 (168)
149 2cyy_A Putative HTH-type trans 29.3 64 0.0022 25.8 4.6 45 82-127 7-52 (151)
150 1tc3_C Protein (TC3 transposas 29.2 99 0.0034 18.8 5.0 38 78-117 5-42 (51)
151 2p1m_A SKP1-like protein 1A; F 28.6 20 0.00067 30.0 1.3 35 47-89 119-153 (160)
152 1ntc_A Protein (nitrogen regul 28.1 83 0.0028 23.5 4.8 35 82-117 51-85 (91)
153 3e7l_A Transcriptional regulat 27.3 74 0.0025 22.1 4.1 33 82-115 19-51 (63)
154 1s7o_A Hypothetical UPF0122 pr 27.2 80 0.0027 24.8 4.7 41 82-123 25-65 (113)
155 1k78_A Paired box protein PAX5 27.0 1.3E+02 0.0045 23.6 6.1 41 76-118 30-70 (149)
156 3au4_B Netrin receptor DCC; pr 27.0 15 0.00053 26.8 0.3 26 279-304 31-56 (63)
157 1qgp_A Protein (double strande 26.5 61 0.0021 23.8 3.6 47 80-127 12-62 (77)
158 2xsa_A Ogoga, hyaluronoglucosa 26.5 1.2E+02 0.0042 29.9 6.8 56 23-93 11-66 (447)
159 2jvw_A Uncharacterized protein 25.7 15 0.0005 28.7 0.0 45 31-88 18-69 (88)
160 1p4w_A RCSB; solution structur 24.6 1.2E+02 0.0041 23.1 5.2 45 76-123 32-76 (99)
161 1qbj_A Protein (double-strande 24.4 1E+02 0.0034 23.0 4.5 46 81-127 9-58 (81)
162 2cg4_A Regulatory protein ASNC 23.2 94 0.0032 24.8 4.5 45 82-127 8-53 (152)
163 2p5v_A Transcriptional regulat 23.0 91 0.0031 25.2 4.4 44 82-126 10-54 (162)
164 1i1g_A Transcriptional regulat 20.6 1.1E+02 0.0037 23.8 4.3 44 83-127 5-49 (141)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=8.2e-35 Score=235.64 Aligned_cols=103 Identities=46% Similarity=0.899 Sum_probs=99.1
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCChHH
Q 021164 21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQ 100 (316)
Q Consensus 21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~kW~~ 100 (316)
+++|+||+|||++|+++|.+||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||++|+.
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 6899999999999999999999988999999998 999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCHHHHHHHHHHHhHhh
Q 021164 101 IAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 101 IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
||++|||||+++||+||+.+++++
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHcCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999875
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=7.7e-35 Score=237.46 Aligned_cols=105 Identities=31% Similarity=0.594 Sum_probs=101.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCChHHhh
Q 021164 23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIA 102 (316)
Q Consensus 23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~kW~~IA 102 (316)
||+||+|||++|+++|.+||..+|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999888999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhHhhhhcc
Q 021164 103 ARLPGRTDNEIKNFWNSTIKKRLKNL 128 (316)
Q Consensus 103 k~lpgRT~~q~KnRW~~llrk~~kk~ 128 (316)
++|||||+++||+||+.++++..+..
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 99999999999999999999876553
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=6.6e-34 Score=239.56 Aligned_cols=106 Identities=42% Similarity=0.751 Sum_probs=102.3
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCChHHhh
Q 021164 23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIA 102 (316)
Q Consensus 23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~kW~~IA 102 (316)
||+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhHhhhhccC
Q 021164 103 ARLPGRTDNEIKNFWNSTIKKRLKNLS 129 (316)
Q Consensus 103 k~lpgRT~~q~KnRW~~llrk~~kk~~ 129 (316)
++|||||+++||+||+.++++.+....
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~ 107 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNS 107 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999998876543
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=8.1e-34 Score=237.77 Aligned_cols=107 Identities=33% Similarity=0.614 Sum_probs=101.6
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhC
Q 021164 16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLG 95 (316)
Q Consensus 16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G 95 (316)
..++..++|+||+|||++|+++|.+||. +|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G 81 (126)
T 3osg_A 4 VNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG 81 (126)
T ss_dssp BC-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence 3467889999999999999999999998 7999999998 9999999999999999999999999999999999999999
Q ss_pred CChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 96 NRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 96 ~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
++|..||+.|||||+++||+||+.++++.
T Consensus 82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 82 RQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988764
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=6.4e-34 Score=238.36 Aligned_cols=109 Identities=43% Similarity=0.864 Sum_probs=102.6
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHh
Q 021164 15 NSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLL 94 (316)
Q Consensus 15 n~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~ 94 (316)
+...|.+++|+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+|
T Consensus 19 ~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~ 97 (128)
T 1h8a_C 19 KVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL 97 (128)
T ss_dssp ---CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHH
T ss_pred HhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHH
Confidence 4467889999999999999999999999888999999998 999999999999999999999999999999999999999
Q ss_pred CCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 95 GNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 95 G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
|++|+.||++|||||+++||+||+.+++++
T Consensus 98 G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 98 GNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp CSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred CcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998875
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=9.9e-32 Score=232.45 Aligned_cols=108 Identities=44% Similarity=0.847 Sum_probs=103.3
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhC
Q 021164 16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLG 95 (316)
Q Consensus 16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G 95 (316)
...|.+++++||+|||++|+++|.+||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||++|++++.+||
T Consensus 51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 51 VLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp TTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence 456788999999999999999999999878999999998 9999999999999999999999999999999999999999
Q ss_pred CChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 96 NRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 96 ~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
++|+.||++|||||+++||+||+.++|++
T Consensus 130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998875
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=2.1e-30 Score=224.11 Aligned_cols=104 Identities=32% Similarity=0.656 Sum_probs=61.0
Q ss_pred CCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC-Ch
Q 021164 20 KLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGN-RW 98 (316)
Q Consensus 20 ~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~-kW 98 (316)
.+++++||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|++||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 46789999999999999999999988999999998 99999999999999999999999999999999999999996 69
Q ss_pred HHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 99 SQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 99 ~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
..||+.|||||+.||++||..++.+.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 107 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPE 107 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 99999999999999999999887543
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=8.8e-23 Score=154.63 Aligned_cols=67 Identities=28% Similarity=0.659 Sum_probs=64.4
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHH
Q 021164 17 NGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEE 84 (316)
Q Consensus 17 ~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED 84 (316)
..+.+++++||+|||++|+++|.+||..+|..||+.|+ +||++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 46789999999999999999999999888999999998 99999999999999999999999999998
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.83 E-value=2.2e-21 Score=162.12 Aligned_cols=75 Identities=27% Similarity=0.625 Sum_probs=51.0
Q ss_pred cccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 49 VARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGN-RWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 49 IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
||+.|+ +||++||++||.++|+|.+++++||+|||++|+++|++||. +|..||+.|||||+.||++||..++.+.
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 76 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPE 76 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSS
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccc
Confidence 788998 99999999999999999999999999999999999999996 6999999999999999999999887643
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.78 E-value=1.3e-19 Score=166.64 Aligned_cols=106 Identities=19% Similarity=0.287 Sum_probs=92.9
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhCCC-----CccccccccccccccccccccccccccCCCC-----------------
Q 021164 18 GNKLRKGLWSPEEDDKLMNYMLKNGQG-----CWSDVARNAGLQRCGKSCRLRWINYLRPDLK----------------- 75 (316)
Q Consensus 18 ~~~lkKg~WT~EEDe~L~~lV~kyG~~-----nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lk----------------- 75 (316)
.+.+.|++||+|||+.|+++|+++|.. .|..||+.|+ |||+.|||.||..+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 456789999999999999999999864 3999999998 99999999999999999997
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h------------------------------------------------
Q 021164 76 ------------RGAFSPQEEELIIHLHSL-L------------------------------------------------ 94 (316)
Q Consensus 76 ------------k~~WT~EED~~Llelv~~-~------------------------------------------------ 94 (316)
+..||.|||..|...+++ +
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 899999999999999887 1
Q ss_pred -----CC----ChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 95 -----GN----RWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 95 -----G~----kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
|. .|.+||+.+|+||.+++|+||+.++++.
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 21 7999999999999999999999998764
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.74 E-value=8.8e-19 Score=134.78 Aligned_cols=60 Identities=23% Similarity=0.369 Sum_probs=48.0
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164 62 CRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIK 122 (316)
Q Consensus 62 Cr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llr 122 (316)
+.-||.++|+|.+++++||+|||++|+++|++||++|++||+.| |||+++||+||+.+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999 9999999999987644
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.72 E-value=1.9e-18 Score=144.61 Aligned_cols=86 Identities=17% Similarity=0.321 Sum_probs=79.5
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccc----cccccccccccccccccc-----CCCCCC-CCCHHH
Q 021164 14 SNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNA----GLQRCGKSCRLRWINYLR-----PDLKRG-AFSPQE 83 (316)
Q Consensus 14 ~n~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l----~~gRt~kQCr~RW~n~L~-----p~lkk~-~WT~EE 83 (316)
.....+..++++||+|||+.|+++|.+||.++|+.||+.+ + +||+.||++||+++|+ |.++++ +|++||
T Consensus 8 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~ 86 (121)
T 2juh_A 8 RSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDL 86 (121)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHH
T ss_pred CccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHH
Confidence 3445678899999999999999999999998899999975 5 9999999999999998 999999 999999
Q ss_pred HHHHHHHHHHhCCChHH
Q 021164 84 EELIIHLHSLLGNRWSQ 100 (316)
Q Consensus 84 D~~Llelv~~~G~kW~~ 100 (316)
+.+|++++..||++|.+
T Consensus 87 ~~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 87 LDRVLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHccchhc
Confidence 99999999999999976
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=124.39 Aligned_cols=62 Identities=26% Similarity=0.396 Sum_probs=58.3
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhhhhccCC
Q 021164 68 NYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSS 130 (316)
Q Consensus 68 n~L~p~lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk~~~ 130 (316)
.+|+|.+++++||+|||++|++++++||.+|.+||+ ++|||+.|||+||+.++++..++...
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 379999999999999999999999999999999999 88999999999999999999887544
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=5.1e-18 Score=124.63 Aligned_cols=57 Identities=26% Similarity=0.483 Sum_probs=54.0
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCC
Q 021164 18 GNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLK 75 (316)
Q Consensus 18 ~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lk 75 (316)
.|.+++++||+|||++|+++|.+||..+|..||+.|+ +||+.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 4778999999999999999999999878999999998 99999999999999999876
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.69 E-value=5.9e-18 Score=120.95 Aligned_cols=52 Identities=44% Similarity=0.842 Sum_probs=49.6
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCC
Q 021164 21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPD 73 (316)
Q Consensus 21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~ 73 (316)
+++++||+|||++|+++|.+||.++|..||+.|+ +||++||++||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5789999999999999999999888999999998 999999999999999985
No 16
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.68 E-value=2e-17 Score=138.66 Aligned_cols=83 Identities=22% Similarity=0.341 Sum_probs=75.4
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccc----ccccccccccccccccc-----cCCCCCCCCCHHH-
Q 021164 14 SNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNA----GLQRCGKSCRLRWINYL-----RPDLKRGAFSPQE- 83 (316)
Q Consensus 14 ~n~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l----~~gRt~kQCr~RW~n~L-----~p~lkk~~WT~EE- 83 (316)
........++++||+|||+.|+++|++||.++|+.|++.+ + +||+.||++||.+++ +|.++++.|+++|
T Consensus 22 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~ 100 (122)
T 2roh_A 22 RPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQEL 100 (122)
T ss_dssp CCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHH
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHH
Confidence 3444667789999999999999999999998999999864 5 999999999999999 8999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 021164 84 EELIIHLHSLLGNR 97 (316)
Q Consensus 84 D~~Llelv~~~G~k 97 (316)
+.+|++++..||++
T Consensus 101 ~~~v~~~h~~~g~~ 114 (122)
T 2roh_A 101 LDRVLAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhhH
Confidence 89999999999974
No 17
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.68 E-value=8.2e-17 Score=122.53 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=55.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 70 LRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 70 L~p~lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
++|.+++++||+|||++|+++|.+||.+|..||++|||||++|||+||+.++++..+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999988765
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.66 E-value=1.1e-17 Score=119.30 Aligned_cols=52 Identities=35% Similarity=0.676 Sum_probs=48.3
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCC
Q 021164 21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPD 73 (316)
Q Consensus 21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~ 73 (316)
+++++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999999878999999998 999999999999999985
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.66 E-value=2.3e-17 Score=124.51 Aligned_cols=65 Identities=22% Similarity=0.335 Sum_probs=59.2
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccccc-ccccccccccccccccCCCCCCCCC
Q 021164 16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGL-QRCGKSCRLRWINYLRPDLKRGAFS 80 (316)
Q Consensus 16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~-gRt~kQCr~RW~n~L~p~lkk~~WT 80 (316)
...+..++++||+|||++|+++|.+||.++|..||+.|+. +||+.||++||.++|+|.+.++..+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 4567788999999999999999999998889999999864 8999999999999999999988764
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.7e-16 Score=116.47 Aligned_cols=55 Identities=20% Similarity=0.400 Sum_probs=51.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 71 RPDLKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 71 ~p~lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
+|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.|||+||+.+|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999999 699999999999999999999999987654
No 21
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.62 E-value=7.1e-17 Score=120.91 Aligned_cols=57 Identities=25% Similarity=0.465 Sum_probs=49.5
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhCCCCccccccccc-cccccccccccccccccCCCC
Q 021164 19 NKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAG-LQRCGKSCRLRWINYLRPDLK 75 (316)
Q Consensus 19 ~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~-~gRt~kQCr~RW~n~L~p~lk 75 (316)
...+|++||+|||++|+++|.+||.++|..||+.++ .+||+.||++||.++++|.++
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 445789999999999999999999988999998753 389999999999999998874
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.61 E-value=6.4e-16 Score=110.20 Aligned_cols=50 Identities=28% Similarity=0.535 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 74 LKRGAFSPQEEELIIHLHSLLGN-RWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 74 lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
+++++||+|||++|+++|++||. +|..||+.|||||+.||++||+.+|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999998 999999999999999999999998864
No 23
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=2.6e-16 Score=115.91 Aligned_cols=56 Identities=20% Similarity=0.485 Sum_probs=51.7
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCC
Q 021164 18 GNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDL 74 (316)
Q Consensus 18 ~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~l 74 (316)
.+.+.+++||+|||++|+++|.+||..+|..||+.|+ +||++||++||.++|.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence 3678899999999999999999999878999999998 9999999999999998653
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.59 E-value=1.4e-15 Score=108.50 Aligned_cols=50 Identities=30% Similarity=0.653 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 74 LKRGAFSPQEEELIIHLHSLLGN-RWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 74 lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||..+|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999988753
No 25
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.58 E-value=2.8e-15 Score=113.08 Aligned_cols=59 Identities=24% Similarity=0.293 Sum_probs=54.4
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCC--CCCHHHHHHHHHHHhHhhhhc
Q 021164 69 YLRPDLKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLP--GRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 69 ~L~p~lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lp--gRT~~q~KnRW~~llrk~~kk 127 (316)
..++..++++||+|||++|+++|++|| ++|..||+.|+ |||+.|||+||+.++++.+.+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 356778899999999999999999999 69999999999 999999999999999987665
No 26
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.57 E-value=2.4e-15 Score=107.95 Aligned_cols=49 Identities=27% Similarity=0.366 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CChHHhhccCC--CCCHHHHHHHHHHHhHh
Q 021164 75 KRGAFSPQEEELIIHLHSLLG-NRWSQIAARLP--GRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 75 kk~~WT~EED~~Llelv~~~G-~kW~~IAk~lp--gRT~~q~KnRW~~llrk 123 (316)
++++||+|||++|+++|++|| ++|..||+.|+ |||+.||++||..++|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999999874
No 27
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.5e-16 Score=118.95 Aligned_cols=60 Identities=25% Similarity=0.377 Sum_probs=54.7
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCC
Q 021164 16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGA 78 (316)
Q Consensus 16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~ 78 (316)
...|.+++++||+|||++|+++|.+||. +|..||+ ++ +||++||++||.++|+|.+++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 4678999999999999999999999998 6999999 77 89999999999999999877653
No 28
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.1e-15 Score=113.89 Aligned_cols=57 Identities=25% Similarity=0.432 Sum_probs=53.3
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 71 RPDLKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 71 ~p~lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
.|.+++++||+|||++|+++|++|| ++|..||++|+|||+.||++||..+|++.+++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~ 61 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK 61 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence 4778999999999999999999999 79999999999999999999999999877655
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=3e-15 Score=110.22 Aligned_cols=53 Identities=15% Similarity=0.264 Sum_probs=49.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 71 RPDLKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 71 ~p~lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
.+.+.+++||+|||++|+++|++|| ++|.+||++|||||+.||++||..++..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 7999999999999999999999988753
No 30
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.56 E-value=9e-16 Score=112.44 Aligned_cols=52 Identities=23% Similarity=0.437 Sum_probs=47.9
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 021164 19 NKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYL 70 (316)
Q Consensus 19 ~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L 70 (316)
..+.+++||+|||++|+++|.+||..+|..||+.|+.+||++||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4567899999999999999999998889999999976899999999999875
No 31
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=8.5e-16 Score=117.46 Aligned_cols=61 Identities=25% Similarity=0.377 Sum_probs=55.8
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhCC-----CCccccccccccccccccccccccccccCCCCCCCC
Q 021164 18 GNKLRKGLWSPEEDDKLMNYMLKNGQ-----GCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAF 79 (316)
Q Consensus 18 ~~~lkKg~WT~EEDe~L~~lV~kyG~-----~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~W 79 (316)
+|.+.+++||+|||++|+++|.+||. .+|..||+.|+ +||++||++||++||.+.++.+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCC
Confidence 57889999999999999999999996 67999999998 999999999999999988776643
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=6.8e-15 Score=112.39 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=52.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC------CChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 71 RPDLKRGAFSPQEEELIIHLHSLLG------NRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 71 ~p~lkk~~WT~EED~~Llelv~~~G------~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
+|.+.+++||+|||++|+++|.+|| .+|.+||++|+|||+.||++||..++++..+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999 78999999999999999999999888876654
No 33
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.53 E-value=1e-14 Score=109.16 Aligned_cols=52 Identities=23% Similarity=0.429 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCC--CCCHHHHHHHHHHHhHhhh
Q 021164 74 LKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLP--GRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 74 lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lp--gRT~~q~KnRW~~llrk~~ 125 (316)
.++++||+|||++|+++|++|| .+|.+||+.++ |||+.|||+||+.++|..+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4789999999999999999999 58999999865 9999999999999988653
No 34
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.52 E-value=2e-15 Score=108.37 Aligned_cols=50 Identities=26% Similarity=0.470 Sum_probs=46.1
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccccccccccccccc
Q 021164 22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGL-QRCGKSCRLRWINYLR 71 (316)
Q Consensus 22 kKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~-gRt~kQCr~RW~n~L~ 71 (316)
++++||+|||++|+++|.+||.++|..||+.++. +||+.||++||.++|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5799999999999999999998889999999854 6999999999999875
No 35
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.50 E-value=1.9e-15 Score=114.93 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=54.3
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCC
Q 021164 16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKR 76 (316)
Q Consensus 16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk 76 (316)
+..|.+++++||+|||++|+++|.+||. +|..||+.|+ +||+.||+.||.++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 3468889999999999999999999998 6999999998 999999999999999887666
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.50 E-value=2.3e-14 Score=104.95 Aligned_cols=51 Identities=25% Similarity=0.390 Sum_probs=46.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCC-CCCHHHHHHHHHHHh
Q 021164 71 RPDLKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLP-GRTDNEIKNFWNSTI 121 (316)
Q Consensus 71 ~p~lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lp-gRT~~q~KnRW~~ll 121 (316)
+..+.+++||+|||++|+++|++|| ++|.+||++|+ +||+.||++||..+.
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3456789999999999999999999 89999999999 999999999998764
No 37
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.24 E-value=2e-15 Score=119.63 Aligned_cols=56 Identities=23% Similarity=0.239 Sum_probs=53.2
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 69 YLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 69 ~L~p~lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
.++|.+++++||+|||++|+++|.+||++|..||++|||||++|||+||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56889999999999999999999999999999999999999999999999998864
No 38
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.45 E-value=3.6e-14 Score=116.06 Aligned_cols=83 Identities=23% Similarity=0.297 Sum_probs=69.1
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccc---cccccccccccccccc-----cCCCCCCCCCHHHHH
Q 021164 14 SNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAG---LQRCGKSCRLRWINYL-----RPDLKRGAFSPQEEE 85 (316)
Q Consensus 14 ~n~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~---~gRt~kQCr~RW~n~L-----~p~lkk~~WT~EED~ 85 (316)
....++..++++||+|||++|+++|.+||.++|+.|++.+. ++||+.||++||.+++ +|.++++.-+++|-.
T Consensus 4 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l 83 (105)
T 2aje_A 4 MLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELL 83 (105)
T ss_dssp -----CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHH
T ss_pred CccccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHH
Confidence 34456788899999999999999999999989999998652 3999999999999998 699999988888876
Q ss_pred H-HHHHHHHhCC
Q 021164 86 L-IIHLHSLLGN 96 (316)
Q Consensus 86 ~-Llelv~~~G~ 96 (316)
. +++|+..+|+
T Consensus 84 ~rv~~~~~~~~~ 95 (105)
T 2aje_A 84 NRVLNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 6 8888877663
No 39
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.41 E-value=2.1e-13 Score=104.70 Aligned_cols=51 Identities=10% Similarity=0.261 Sum_probs=47.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164 72 PDLKRGAFSPQEEELIIHLHSLLG----NRWSQIAARLPGRTDNEIKNFWNSTIK 122 (316)
Q Consensus 72 p~lkk~~WT~EED~~Llelv~~~G----~kW~~IAk~lpgRT~~q~KnRW~~llr 122 (316)
+...+++||+|||++|++++.+|| .+|.+||++|||||+.||++||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999999 689999999999999999999998875
No 40
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.39 E-value=1.6e-13 Score=107.88 Aligned_cols=69 Identities=22% Similarity=0.390 Sum_probs=59.9
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCccccccc----cccccccccccccccccc-----cCCCCCC-CCCHHHHHHHHHHHHH
Q 021164 24 GLWSPEEDDKLMNYMLKNGQGCWSDVARN----AGLQRCGKSCRLRWINYL-----RPDLKRG-AFSPQEEELIIHLHSL 93 (316)
Q Consensus 24 g~WT~EEDe~L~~lV~kyG~~nW~~IA~~----l~~gRt~kQCr~RW~n~L-----~p~lkk~-~WT~EED~~Llelv~~ 93 (316)
++||+|||++|+++|++||.++|+.||+. ++ +||+.||++||+++| +|.++++ +..++...+++.|+..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999899999985 76 999999999999988 6776665 6777777888888754
No 41
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.39 E-value=6.9e-14 Score=117.29 Aligned_cols=84 Identities=19% Similarity=0.324 Sum_probs=62.0
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhC
Q 021164 16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLG 95 (316)
Q Consensus 16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G 95 (316)
...|.+++|+||+|||++|+++|.+||.. |..||+.|+ |||+.||+.||.++|++.+..++|+.+--. ......
T Consensus 47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~-W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~----p~~~kk 120 (131)
T 3zqc_A 47 HLDPAVVKHAWTPEEDETIFRNYLKLGSK-WSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEILL----PDRSKK 120 (131)
T ss_dssp HTSTTCCCSCCCHHHHHHHHHHHHHSCSC-HHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCCCC----CCCC--
T ss_pred ccCccccCCCCCHHHHHHHHHHHHHHCcC-HHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcccccC----chhhhh
Confidence 45678899999999999999999999965 999999998 999999999999999999999998876311 012224
Q ss_pred CChHHhhccC
Q 021164 96 NRWSQIAARL 105 (316)
Q Consensus 96 ~kW~~IAk~l 105 (316)
.+|..|++.+
T Consensus 121 ~~~~~i~k~~ 130 (131)
T 3zqc_A 121 RKAADVPKKL 130 (131)
T ss_dssp ----------
T ss_pred hhhhhcchhc
Confidence 5688887765
No 42
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.37 E-value=1.3e-13 Score=105.97 Aligned_cols=58 Identities=22% Similarity=0.402 Sum_probs=47.6
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCC
Q 021164 14 SNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLK 75 (316)
Q Consensus 14 ~n~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lk 75 (316)
-+...|.+++++||+|||++|+++|.+||.+ |+.||+.| |||+.||+.||.. |....+
T Consensus 14 ~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l--gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 14 LYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL--GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp -----CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred eeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence 4667899999999999999999999999987 99999998 7999999999985 444433
No 43
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.36 E-value=8.3e-13 Score=98.37 Aligned_cols=51 Identities=22% Similarity=0.386 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCChHHhh---ccCCCCCHHHHHHHHHHHhHhh
Q 021164 74 LKRGAFSPQEEELIIHLHSLLGNRWSQIA---ARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 74 lkk~~WT~EED~~Llelv~~~G~kW~~IA---k~lpgRT~~q~KnRW~~llrk~ 124 (316)
-++.+||+|||+.|+++|++||.+|.+|+ .++++||..+||+||+.++|+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 36789999999999999999999999999 5779999999999999998753
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.36 E-value=1.8e-13 Score=106.49 Aligned_cols=51 Identities=18% Similarity=0.380 Sum_probs=46.9
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 021164 17 NGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINY 69 (316)
Q Consensus 17 ~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~ 69 (316)
......+++||+|||++|+++|++|| .+|..||++|+ +||+.||+.||+++
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 44556689999999999999999999 78999999998 99999999999998
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.34 E-value=4.9e-13 Score=104.00 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=45.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHH
Q 021164 73 DLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNST 120 (316)
Q Consensus 73 ~lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~l 120 (316)
...+++||+|||++|++++++||.+|.+||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999755
No 46
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.33 E-value=1.2e-12 Score=109.10 Aligned_cols=55 Identities=24% Similarity=0.555 Sum_probs=50.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 71 RPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 71 ~p~lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
.+..++++||+|||++|+++|.+||.+|..||+.|||||+.||+.||...+...+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~ 60 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSI 60 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccc
Confidence 4568899999999999999999999999999999999999999999999886544
No 47
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.33 E-value=2.2e-12 Score=101.31 Aligned_cols=49 Identities=27% Similarity=0.492 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC-ChHHhhcc----CCCCCHHHHHHHHHHHhHhhh
Q 021164 77 GAFSPQEEELIIHLHSLLGN-RWSQIAAR----LPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 77 ~~WT~EED~~Llelv~~~G~-kW~~IAk~----lpgRT~~q~KnRW~~llrk~~ 125 (316)
.+||+|||++|+++|++||. +|+.|++. |+|||+++||+||++++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999997 99999995 899999999999999998654
No 48
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.32 E-value=1.2e-12 Score=105.40 Aligned_cols=51 Identities=29% Similarity=0.660 Sum_probs=47.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-ChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 73 DLKRGAFSPQEEELIIHLHSLLGN-RWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 73 ~lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
++++++||+|||++|+++|++||. +|..||+.|||||+.||+.||..++.+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p 52 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 52 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCC
Confidence 378999999999999999999996 699999999999999999999988753
No 49
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.32 E-value=3.9e-12 Score=104.01 Aligned_cols=55 Identities=24% Similarity=0.392 Sum_probs=49.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHhhccC----CCCCHHHHHHHHHHHhHhhh
Q 021164 71 RPDLKRGAFSPQEEELIIHLHSLLGN-RWSQIAARL----PGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 71 ~p~lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~l----pgRT~~q~KnRW~~llrk~~ 125 (316)
.+..++++||+|||++|+++|++||. +|+.|++.+ ++||+.+||+||+.+++...
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 34578899999999999999999996 999999965 89999999999999998654
No 50
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.28 E-value=7.7e-13 Score=101.60 Aligned_cols=55 Identities=15% Similarity=0.387 Sum_probs=49.3
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccc
Q 021164 16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQ---GCWSDVARNAGLQRCGKSCRLRWINYLR 71 (316)
Q Consensus 16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~---~nW~~IA~~l~~gRt~kQCr~RW~n~L~ 71 (316)
..++...+++||++||++|++++.+||. .+|.+||+.|| |||..||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4566778899999999999999999993 56999999998 9999999999998764
No 51
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.95 E-value=3e-13 Score=107.08 Aligned_cols=57 Identities=26% Similarity=0.477 Sum_probs=51.7
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccC
Q 021164 14 SNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRP 72 (316)
Q Consensus 14 ~n~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p 72 (316)
.....+.+.+++||+|||++|+++|.+||. +|..||+.|+ |||+.||+.||.++|..
T Consensus 7 ~~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 7 HSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 344568889999999999999999999998 5999999998 99999999999998863
No 52
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.26 E-value=7.8e-12 Score=104.58 Aligned_cols=56 Identities=27% Similarity=0.453 Sum_probs=51.1
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHhhcc----CCCCCHHHHHHHHHHHhHhhh
Q 021164 70 LRPDLKRGAFSPQEEELIIHLHSLLGN-RWSQIAAR----LPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 70 L~p~lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~----lpgRT~~q~KnRW~~llrk~~ 125 (316)
+.+..++++||+|||+.|+++|++||. +|+.|++. |+|||+.+||+||+.+++...
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 566788999999999999999999997 99999997 499999999999999998643
No 53
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.24 E-value=3.7e-12 Score=117.23 Aligned_cols=55 Identities=25% Similarity=0.519 Sum_probs=48.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC------hHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 72 PDLKRGAFSPQEEELIIHLHSLLGNR------WSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 72 p~lkk~~WT~EED~~Llelv~~~G~k------W~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
+.+++++||+|||++|+++|++||++ |..||++|||||++|||+||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35788999999999999999999875 99999999999999999999999999865
No 54
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.23 E-value=7e-12 Score=101.60 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=45.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 76 RGAFSPQEEELIIHLHSLLGN-RWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~G~-kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
+++||+|||++|+++|.+||. +|..||..|||||+.||+.||..++...
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~ 50 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPA 50 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHccc
Confidence 579999999999999999996 8999999999999999999999888643
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.20 E-value=1.6e-11 Score=98.33 Aligned_cols=51 Identities=20% Similarity=0.423 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 75 KRGAFSPQEEELIIHLHSLLG----NRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 75 kk~~WT~EED~~Llelv~~~G----~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
.+++||.|||++|++++.+|| .+|.+||++|||||+++|++||+.+++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~ 61 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIK 61 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 467999999999999999996 679999999999999999999999987643
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.20 E-value=3.4e-11 Score=100.84 Aligned_cols=55 Identities=25% Similarity=0.465 Sum_probs=49.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHhhcc----CCCCCHHHHHHHHHHHhHhhh
Q 021164 71 RPDLKRGAFSPQEEELIIHLHSLLGN-RWSQIAAR----LPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 71 ~p~lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~----lpgRT~~q~KnRW~~llrk~~ 125 (316)
....++++||+|||+.|+++|++||. +|+.|++. |++||+.+||+||+.+++...
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 34467899999999999999999996 99999986 499999999999999998654
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.04 E-value=2.5e-10 Score=91.47 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=60.1
Q ss_pred ccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCChHHhhccC-----CCCCHHHHHHHHHHHhHhhhhcc
Q 021164 60 KSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARL-----PGRTDNEIKNFWNSTIKKRLKNL 128 (316)
Q Consensus 60 kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~kW~~IAk~l-----pgRT~~q~KnRW~~llrk~~kk~ 128 (316)
.=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+.++ ++||..+||+||..+.++..+..
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5678999999986 89999999999999999999999999998 58999999999999999887765
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=5.6e-10 Score=82.34 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164 75 KRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIK 122 (316)
Q Consensus 75 kk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llr 122 (316)
...+||+||++++++++.+||.+|..||..||+||..+|+.+|....+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999976543
No 59
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.99 E-value=6.5e-11 Score=94.80 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=43.2
Q ss_pred cccCCCHHHHHHHHHHHHHhC---CCCccccccccccccccccccccccccc
Q 021164 22 RKGLWSPEEDDKLMNYMLKNG---QGCWSDVARNAGLQRCGKSCRLRWINYL 70 (316)
Q Consensus 22 kKg~WT~EEDe~L~~lV~kyG---~~nW~~IA~~l~~gRt~kQCr~RW~n~L 70 (316)
.+++||+|||++|++++.+|+ ...|..||+.|| |||..||+.||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 367899999999999999997 356999999998 999999999999874
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.82 E-value=4.6e-09 Score=80.28 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=45.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 73 DLKRGAFSPQEEELIIHLHSLLG----NRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 73 ~lkk~~WT~EED~~Llelv~~~G----~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
..+.++||.||+++|.+++.+|+ .+|.+||.++ |||..+|++||+.|.+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45678999999999999999997 5799999998 99999999999998765
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.77 E-value=4.5e-09 Score=96.10 Aligned_cols=49 Identities=14% Similarity=0.304 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 75 KRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 75 kk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
...+||+||++++++++.+||++|..||+.+++||..|||++|....|+
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999987765
No 62
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.71 E-value=3.1e-09 Score=79.14 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=43.3
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCccccc---ccccccccccccccccccccc
Q 021164 22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVA---RNAGLQRCGKSCRLRWINYLR 71 (316)
Q Consensus 22 kKg~WT~EEDe~L~~lV~kyG~~nW~~IA---~~l~~gRt~kQCr~RW~n~L~ 71 (316)
.+.+||+|||+.|+++|++||. +|..|+ ..++ +||...+++||++...
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 5789999999999999999998 799999 4665 9999999999998764
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=6e-09 Score=76.75 Aligned_cols=50 Identities=12% Similarity=0.311 Sum_probs=44.0
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 021164 18 GNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINY 69 (316)
Q Consensus 18 ~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~ 69 (316)
+.....++||+||++++.+++.+||. +|..||+.|+ +||..||+.+|...
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 34456789999999999999999995 6999999998 99999999998654
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.58 E-value=7.3e-08 Score=73.95 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----ChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 76 RGAFSPQEEELIIHLHSLLGN----RWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~G~----kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
...||.+|+++|.+++..|+. +|.+||..+||||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999984 699999999999999999999988654
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.51 E-value=5.6e-08 Score=97.39 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164 77 GAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIK 122 (316)
Q Consensus 77 ~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llr 122 (316)
..||+||-+++++++.+||.+|..||+.+.+||..|||++|....+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999975444
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.48 E-value=2.2e-08 Score=76.44 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=42.7
Q ss_pred CcccCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccc
Q 021164 21 LRKGLWSPEEDDKLMNYMLKNGQ---GCWSDVARNAGLQRCGKSCRLRWINYLR 71 (316)
Q Consensus 21 lkKg~WT~EEDe~L~~lV~kyG~---~nW~~IA~~l~~gRt~kQCr~RW~n~L~ 71 (316)
..++.||.|||++|.+++.+|+. ..|..||+.+ |||..||+.||..+..
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 34678999999999999999983 5699999986 6999999999987654
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.40 E-value=5.5e-08 Score=71.54 Aligned_cols=48 Identities=21% Similarity=0.461 Sum_probs=43.3
Q ss_pred ccCCCHHHHHHHHHHHHHh--------CCCCcccccc-cccccccccccccccccccc
Q 021164 23 KGLWSPEEDDKLMNYMLKN--------GQGCWSDVAR-NAGLQRCGKSCRLRWINYLR 71 (316)
Q Consensus 23 Kg~WT~EEDe~L~~lV~ky--------G~~nW~~IA~-~l~~gRt~kQCr~RW~n~L~ 71 (316)
+.+||+|||+.|+++|.+| |..-|..+|+ .++ .+|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5789999999999999999 5556999999 787 9999999999999875
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.39 E-value=2.7e-07 Score=67.80 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCC-hHHhhc-cCCCCCHHHHHHHHHHHhH
Q 021164 76 RGAFSPQEEELIIHLHSLL--------GNR-WSQIAA-RLPGRTDNEIKNFWNSTIK 122 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~--------G~k-W~~IAk-~lpgRT~~q~KnRW~~llr 122 (316)
+.+||+|||+.|++.|.+| |++ |.++++ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5799999999999999999 654 999999 7999999999999987664
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.36 E-value=9.7e-08 Score=73.25 Aligned_cols=49 Identities=27% Similarity=0.504 Sum_probs=43.6
Q ss_pred ccCCCHHHHHHHHHHHHHhCC---CCccccccccccccccccccccccccccC
Q 021164 23 KGLWSPEEDDKLMNYMLKNGQ---GCWSDVARNAGLQRCGKSCRLRWINYLRP 72 (316)
Q Consensus 23 Kg~WT~EEDe~L~~lV~kyG~---~nW~~IA~~l~~gRt~kQCr~RW~n~L~p 72 (316)
...||.+|+++|.+++..|+. .+|..||..|| +||..+|+.||..++.-
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 357999999999999999985 57999999998 99999999999987643
No 70
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=3e-06 Score=62.77 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=44.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCChHHhhc-cCCCCCHHHHHHHHHH
Q 021164 71 RPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAA-RLPGRTDNEIKNFWNS 119 (316)
Q Consensus 71 ~p~lkk~~WT~EED~~Llelv~~~G~kW~~IAk-~lpgRT~~q~KnRW~~ 119 (316)
.|.+...+||+||-++..+++.+||.+|..|++ .+++||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 367888999999999999999999999999999 5899999999988864
No 71
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.20 E-value=2.7e-06 Score=67.68 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC---ChHHhhccCCCCCHHHHHHHHHHHhHhhhhcc
Q 021164 77 GAFSPQEEELIIHLHSLLGN---RWSQIAARLPGRTDNEIKNFWNSTIKKRLKNL 128 (316)
Q Consensus 77 ~~WT~EED~~Llelv~~~G~---kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk~ 128 (316)
--||.|||..||...++-|. .|..||+.|.+|+.+||++||+.|++-..+..
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCS
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHh
Confidence 36999999999999999996 79999999999999999999999998776654
No 72
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.17 E-value=5.4e-07 Score=82.42 Aligned_cols=49 Identities=18% Similarity=0.311 Sum_probs=44.6
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccc
Q 021164 21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLR 71 (316)
Q Consensus 21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~ 71 (316)
....+||+||++++++++.+||. +|..||+.|+ +||..||+.+|.++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 35688999999999999999995 5999999998 9999999999988764
No 73
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.07 E-value=5.4e-06 Score=66.26 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=52.6
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHHhCCChHHhhccCC-----CCCHHHHHHHHHHHhHhhhhcc
Q 021164 64 LRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLP-----GRTDNEIKNFWNSTIKKRLKNL 128 (316)
Q Consensus 64 ~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lp-----gRT~~q~KnRW~~llrk~~kk~ 128 (316)
+.|..+|. ...||.||...|++|+++|+-+|..|+.++. .||-.++|.||..+.++..+..
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34555654 3689999999999999999999999999873 7999999999999999887764
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.00 E-value=1e-06 Score=67.57 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=39.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccc
Q 021164 23 KGLWSPEEDDKLMNYMLKNGQ---GCWSDVARNAGLQRCGKSCRLRWI 67 (316)
Q Consensus 23 Kg~WT~EEDe~L~~lV~kyG~---~nW~~IA~~l~~gRt~kQCr~RW~ 67 (316)
...||.+|+++|.+++..|.. ..|.+||+.|| |||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 567999999999999999975 36999999998 999999999985
No 75
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.99 E-value=1.3e-05 Score=76.36 Aligned_cols=99 Identities=15% Similarity=0.224 Sum_probs=79.6
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccc----cc------------------------------
Q 021164 24 GLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWI----NY------------------------------ 69 (316)
Q Consensus 24 g~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~----n~------------------------------ 69 (316)
+.||..+...++.++.+||..+|..||..|+ ++|...++.-+. +|
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999999999999998 898887743211 11
Q ss_pred -------------c---cCCCCCCCCCHHHHHHHHHHHHHhCC----ChHHhhc------------cCCCCCHHHHHHHH
Q 021164 70 -------------L---RPDLKRGAFSPQEEELIIHLHSLLGN----RWSQIAA------------RLPGRTDNEIKNFW 117 (316)
Q Consensus 70 -------------L---~p~lkk~~WT~EED~~Llelv~~~G~----kW~~IAk------------~lpgRT~~q~KnRW 117 (316)
| -+..+...||++||..||-++.+||- .|..|.. ++..||+.+|..|=
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 12234578999999999999999994 6999962 34679999999999
Q ss_pred HHHhHh
Q 021164 118 NSTIKK 123 (316)
Q Consensus 118 ~~llrk 123 (316)
..|++-
T Consensus 270 ~tLi~~ 275 (304)
T 1ofc_X 270 NTLITL 275 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988874
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.98 E-value=1.6e-06 Score=66.50 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----ChHHhhccCCCCCHHHHHHHHH
Q 021164 75 KRGAFSPQEEELIIHLHSLLGN----RWSQIAARLPGRTDNEIKNFWN 118 (316)
Q Consensus 75 kk~~WT~EED~~Llelv~~~G~----kW~~IAk~lpgRT~~q~KnRW~ 118 (316)
...+||.+|+++|..++.+|+. +|.+||..+||||..+|+.+|.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 3568999999999999999984 7999999999999999999884
No 77
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.21 E-value=9.8e-07 Score=66.67 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 78 AFSPQEEELIIHLHSLLGN---RWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 78 ~WT~EED~~Llelv~~~G~---kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
-||.|||..||..+++-|. .|..||+.| +||++||++||..|++-..+
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf~k 66 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLFEK 66 (70)
Confidence 6999999999999999997 799999999 99999999999998875443
No 78
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.71 E-value=4.5e-05 Score=60.75 Aligned_cols=45 Identities=22% Similarity=0.163 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHH
Q 021164 76 RGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNST 120 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~l 120 (316)
...||+||.++..+++..||++|..||+.||+||..+|-..|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 468999999999999999999999999999999999999988644
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.70 E-value=6.5e-05 Score=56.71 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHhhc-cCCCCCHHHHHHHHHH
Q 021164 76 RGAFSPQEEELIIHLHSLLGNRWSQIAA-RLPGRTDNEIKNFWNS 119 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~G~kW~~IAk-~lpgRT~~q~KnRW~~ 119 (316)
..+||+||-++..+++.+||.+|..|++ .+|+||..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4689999999999999999999999999 5899999999998873
No 80
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=1.9e-05 Score=58.40 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=44.2
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhCCCCcccccc-cccccccccccccccc
Q 021164 16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVAR-NAGLQRCGKSCRLRWI 67 (316)
Q Consensus 16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~-~l~~gRt~kQCr~RW~ 67 (316)
+..|.+....||+||-++..+++.+||. +|..||+ .++ +|+..||.+-|.
T Consensus 2 ~~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY 52 (63)
T 2yqk_A 2 SSGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYY 52 (63)
T ss_dssp CCCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHH
T ss_pred CCCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHh
Confidence 3568888899999999999999999996 5999998 587 999999988764
No 81
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.41 E-value=0.00016 Score=55.94 Aligned_cols=53 Identities=17% Similarity=0.349 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CChHHhhccC----CCCCHHHHHHHHHHHhHhhhhcc
Q 021164 76 RGAFSPQEEELIIHLHSLLG----------NRWSQIAARL----PGRTDNEIKNFWNSTIKKRLKNL 128 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~G----------~kW~~IAk~l----pgRT~~q~KnRW~~llrk~~kk~ 128 (316)
...||.+|-.+||+++.++. ..|..||..| -.||+.||+++|..|.+...+.+
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k 70 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAK 70 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999998642 2599999986 36999999999999988755543
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.25 E-value=8.6e-05 Score=74.52 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=42.7
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 021164 21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINY 69 (316)
Q Consensus 21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~ 69 (316)
....+||.+|.+++++++.+||. +|..||+.|+ +|+..||+..|.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 35689999999999999999996 6999999999 99999999998764
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.23 E-value=9.5e-05 Score=59.05 Aligned_cols=48 Identities=13% Similarity=0.233 Sum_probs=42.0
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCccccccccc----cccccccccccccccc
Q 021164 22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAG----LQRCGKSCRLRWINYL 70 (316)
Q Consensus 22 kKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~----~gRt~kQCr~RW~n~L 70 (316)
...+||.||+..|++++++|+.+ |..|+..+. .+||..++++||..+.
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 34899999999999999999987 999999883 2799999999997654
No 84
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.97 E-value=0.0016 Score=57.49 Aligned_cols=103 Identities=15% Similarity=0.119 Sum_probs=68.0
Q ss_pred CCcccCCCHHHHHHHHHHHHHhC--CCCccccccc--ccccccccccccc-------ccc--------------------
Q 021164 20 KLRKGLWSPEEDDKLMNYMLKNG--QGCWSDVARN--AGLQRCGKSCRLR-------WIN-------------------- 68 (316)
Q Consensus 20 ~lkKg~WT~EEDe~L~~lV~kyG--~~nW~~IA~~--l~~gRt~kQCr~R-------W~n-------------------- 68 (316)
+-....||..|-..|++++.+|| ...|..|++. +. +|+...+++- ...
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~ 82 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVK 82 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 34456799999999999999999 5679999853 33 4444433220 000
Q ss_pred ------------------------ccc--------------------CCCCCCCCCHHHHHHHHHHHHHhC-CChHHhhc
Q 021164 69 ------------------------YLR--------------------PDLKRGAFSPQEEELIIHLHSLLG-NRWSQIAA 103 (316)
Q Consensus 69 ------------------------~L~--------------------p~lkk~~WT~EED~~Llelv~~~G-~kW~~IAk 103 (316)
.|. +..-...||++||..||-.+.+|| ++|.+|..
T Consensus 83 ~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 83 GPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 000 011123699999999999999999 99999954
Q ss_pred --cC------------CCCCHHHHHHHHHHHhHh
Q 021164 104 --RL------------PGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 104 --~l------------pgRT~~q~KnRW~~llrk 123 (316)
.| ..++...+..|-..|++-
T Consensus 163 D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 163 DPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp CSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred ChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 21 124567899997766653
No 85
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.92 E-value=0.00026 Score=56.27 Aligned_cols=43 Identities=14% Similarity=0.359 Sum_probs=38.9
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccc
Q 021164 23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWI 67 (316)
Q Consensus 23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~ 67 (316)
...||+||.+++.+++..||. +|..||+.++ +|+..||.+-|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHh
Confidence 467999999999999999995 5999999998 999999998764
No 86
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.84 E-value=0.00011 Score=56.76 Aligned_cols=50 Identities=22% Similarity=0.524 Sum_probs=39.9
Q ss_pred CcccCCCHHHHHHHHHHHHHhCC---------CCcccccccc---ccccccccccccccccc
Q 021164 21 LRKGLWSPEEDDKLMNYMLKNGQ---------GCWSDVARNA---GLQRCGKSCRLRWINYL 70 (316)
Q Consensus 21 lkKg~WT~EEDe~L~~lV~kyG~---------~nW~~IA~~l---~~gRt~kQCr~RW~n~L 70 (316)
.+...||.+|-..|+++...... ..|..||..| +-.|++.||+.+|.+..
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35678999999999999876321 2599999876 34699999999998764
No 87
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.80 E-value=0.00042 Score=52.23 Aligned_cols=44 Identities=16% Similarity=0.115 Sum_probs=39.0
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCcccccc-cccccccccccccccc
Q 021164 22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVAR-NAGLQRCGKSCRLRWI 67 (316)
Q Consensus 22 kKg~WT~EEDe~L~~lV~kyG~~nW~~IA~-~l~~gRt~kQCr~RW~ 67 (316)
....||+||-++..+++.+||. +|..||+ .|+ +|+..||.+-|.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHH
Confidence 3467999999999999999996 5999999 588 999999988765
No 88
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.62 E-value=0.00033 Score=52.90 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=40.7
Q ss_pred cCCCHHHHHHHHHHHHHhCC--CCcccccccccccccccccccccccccc
Q 021164 24 GLWSPEEDDKLMNYMLKNGQ--GCWSDVARNAGLQRCGKSCRLRWINYLR 71 (316)
Q Consensus 24 g~WT~EEDe~L~~lV~kyG~--~nW~~IA~~l~~gRt~kQCr~RW~n~L~ 71 (316)
-.||.|||..|+..+++.|. .-|..||..+ +|++.|+..|++..+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 46999999999999999986 3599999887 5999999999988664
No 89
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.56 E-value=0.006 Score=59.47 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=78.5
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc----------------------------------
Q 021164 24 GLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINY---------------------------------- 69 (316)
Q Consensus 24 g~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~---------------------------------- 69 (316)
+-||.-+=..++.++.+||..+-..||..|.++++...++ +|...
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888899999999999988999999885467776665 22210
Q ss_pred --------ccC----------C-CCCCCCCHHHHHHHHHHHHHhC----CChHHhhcc------------CCCCCHHHHH
Q 021164 70 --------LRP----------D-LKRGAFSPQEEELIIHLHSLLG----NRWSQIAAR------------LPGRTDNEIK 114 (316)
Q Consensus 70 --------L~p----------~-lkk~~WT~EED~~Llelv~~~G----~kW~~IAk~------------lpgRT~~q~K 114 (316)
-+| . -+...||++||..||-++.+|| +.|..|-.. |..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 011 1 1356799999999999999999 469998432 3569999999
Q ss_pred HHHHHHhHhhhhc
Q 021164 115 NFWNSTIKKRLKN 127 (316)
Q Consensus 115 nRW~~llrk~~kk 127 (316)
.|=..|++-..+.
T Consensus 283 rRc~tLi~~IeKE 295 (374)
T 2y9y_A 283 RRGNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999865554
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.48 E-value=0.0017 Score=51.68 Aligned_cols=48 Identities=17% Similarity=0.380 Sum_probs=41.8
Q ss_pred cccCCCHHHHHHHHHHHHHhCC--CCccccccccccccccccccccccccc
Q 021164 22 RKGLWSPEEDDKLMNYMLKNGQ--GCWSDVARNAGLQRCGKSCRLRWINYL 70 (316)
Q Consensus 22 kKg~WT~EEDe~L~~lV~kyG~--~nW~~IA~~l~~gRt~kQCr~RW~n~L 70 (316)
+--.||.|||..|+...++.|. +-|..||+.++ +|++.|+++|++..+
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM 81 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHHH
Confidence 3456999999999999999985 45999999998 899999999997643
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.93 E-value=0.07 Score=39.66 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=40.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---hHHhhccC--CCCCHHHHHHHHHHHh
Q 021164 74 LKRGAFSPQEEELIIHLHSLLGNR---WSQIAARL--PGRTDNEIKNFWNSTI 121 (316)
Q Consensus 74 lkk~~WT~EED~~Llelv~~~G~k---W~~IAk~l--pgRT~~q~KnRW~~ll 121 (316)
-.+-.||+|..+..++++.++|.. +..|.+.| +|.|..+|+.+...+.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999954 78998875 7999999999876543
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.64 E-value=0.026 Score=44.93 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=40.3
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCccccccccc----cccccccccccccccc
Q 021164 21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAG----LQRCGKSCRLRWINYL 70 (316)
Q Consensus 21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~----~gRt~kQCr~RW~n~L 70 (316)
++...||.||...|++++++|... |..|+.... ..|+..+.++||....
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 334679999999999999999976 999998763 2688888999987643
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.16 E-value=0.25 Score=46.90 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 76 RGAFSPQEEELIIHLHSLLGN-RWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~G~-kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
-+.||..|...++.+..+||. +|..||..++|+|...|+..+..+..+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 468999999999999999995 799999999999999998777666654
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=90.65 E-value=0.29 Score=42.82 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=42.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC---CChHHhhcc--CCCCCHHHHHHHHHHHhHhhhh
Q 021164 74 LKRGAFSPQEEELIIHLHSLLG---NRWSQIAAR--LPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 74 lkk~~WT~EED~~Llelv~~~G---~kW~~IAk~--lpgRT~~q~KnRW~~llrk~~k 126 (316)
-....||+.|-..|+.++.+|| .+|..|+.. |.+||...|+.-+..++..-.+
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 3557899999999999999999 579999874 7899999999877766655433
No 95
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=89.10 E-value=0.18 Score=37.40 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=37.8
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhCCC--Cccccccccc-ccccccccccccccc
Q 021164 19 NKLRKGLWSPEEDDKLMNYMLKNGQG--CWSDVARNAG-LQRCGKSCRLRWINY 69 (316)
Q Consensus 19 ~~lkKg~WT~EEDe~L~~lV~kyG~~--nW~~IA~~l~-~gRt~kQCr~RW~n~ 69 (316)
.+..+-.||+|..++++++|...|.. -++.|.+.|+ .+.|..|+..+.+.|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999943 2667877654 256777777665543
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=88.80 E-value=0.2 Score=46.73 Aligned_cols=28 Identities=36% Similarity=0.787 Sum_probs=25.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCcccccc
Q 021164 24 GLWSPEEDDKLMNYMLKNGQGCWSDVAR 51 (316)
Q Consensus 24 g~WT~EEDe~L~~lV~kyG~~nW~~IA~ 51 (316)
..|+.+||..|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999953
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=76.38 E-value=5.6 Score=36.92 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CChHHhhc--cCCCCCHHHHHHHHHHHhHh
Q 021164 76 RGAFSPQEEELIIHLHSLLG---NRWSQIAA--RLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~G---~kW~~IAk--~lpgRT~~q~KnRW~~llrk 123 (316)
+++||+-|-..|+.++.+|| .+|..|+. .|+.|+...++.-+..++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 58999976 47999999999999877753
No 98
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=72.33 E-value=11 Score=30.52 Aligned_cols=42 Identities=14% Similarity=0.307 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCC--------ChHHhhccC--CCCC--HHHHHHHHHHHhHhhhh
Q 021164 85 ELIIHLHSLLGN--------RWSQIAARL--PGRT--DNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 85 ~~Llelv~~~G~--------kW~~IAk~l--pgRT--~~q~KnRW~~llrk~~k 126 (316)
-+|..+|.++|+ +|.+|+..| |.-+ ...+|..|..+|-..-.
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~ 98 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNL 98 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 357788888884 799999987 2212 46889999988876443
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=66.88 E-value=6.5 Score=27.20 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 82 QEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 82 EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
+.+..++.++-..|-.+.+||..+ |-+...|+.+....+++-.+
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 555666777667889999999999 88999999988777665443
No 100
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=65.48 E-value=1.7 Score=35.77 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=38.7
Q ss_pred HHHHHHHHhC-------CCCcccccccccccccc----ccccccccccccCCCCCCCCCHHHHHHHHHHHH
Q 021164 33 KLMNYMLKNG-------QGCWSDVARNAGLQRCG----KSCRLRWINYLRPDLKRGAFSPQEEELIIHLHS 92 (316)
Q Consensus 33 ~L~~lV~kyG-------~~nW~~IA~~l~~gRt~----kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~ 92 (316)
+|..+|.+.| .+.|..||..++...+. ...+..|.++|.|-- ..+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 3444555554 34599999998744433 356888999987653 277788888877664
No 101
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=61.53 E-value=9.3 Score=27.21 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHH----hCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 82 QEEELIIHLHSL----LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 82 EED~~Llelv~~----~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
+.+..++.+.-- .|-.+.+||+.+ |-|...|+.+....+++-.
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 445556666554 578999999999 9999999998877766554
No 102
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=60.11 E-value=54 Score=26.44 Aligned_cols=93 Identities=13% Similarity=0.078 Sum_probs=55.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc------ccCCCC----CCCCCHHHHHHHHHHHH
Q 021164 23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINY------LRPDLK----RGAFSPQEEELIIHLHS 92 (316)
Q Consensus 23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~------L~p~lk----k~~WT~EED~~Llelv~ 92 (316)
..+.|.++-.+++.++. .|. ....||+.++ .+...+ .||.+. +.+... ....++++.+.|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lg--is~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QGV-RPCDISRQLR--VSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HTC-CHHHHHHHHT--CCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34689999888888874 453 3789999886 433333 344433 222211 23578888888888887
Q ss_pred HhC-CChHHhhccC---------CCCCHHHHHHHHHHH
Q 021164 93 LLG-NRWSQIAARL---------PGRTDNEIKNFWNST 120 (316)
Q Consensus 93 ~~G-~kW~~IAk~l---------pgRT~~q~KnRW~~l 120 (316)
+.. -.-.+|+..+ ..-+...|....+..
T Consensus 98 ~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~ 135 (159)
T 2k27_A 98 QNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTK 135 (159)
T ss_dssp HCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHH
T ss_pred HCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHH
Confidence 653 2234555544 135666665544433
No 103
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=58.55 E-value=20 Score=28.95 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCC--------ChHHhhccCCC-C---CHHHHHHHHHHHhHhhhh
Q 021164 85 ELIIHLHSLLGN--------RWSQIAARLPG-R---TDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 85 ~~Llelv~~~G~--------kW~~IAk~lpg-R---T~~q~KnRW~~llrk~~k 126 (316)
-+|..+|.++|+ .|.+||..|.- . ...++|..|..+|-..-.
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~ 107 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFEC 107 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 457788888884 79999998722 2 246889999988876544
No 104
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=57.49 E-value=9.1 Score=26.88 Aligned_cols=43 Identities=9% Similarity=0.167 Sum_probs=32.4
Q ss_pred HHHHHHHHHHH----HhCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 82 QEEELIIHLHS----LLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 82 EED~~Llelv~----~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
+.+..++.+.- ..|-.+.+||+.+ |-|...|+.+....+++-.
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 44555555554 3478999999999 9999999998887776543
No 105
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=56.44 E-value=2.2 Score=34.45 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=29.7
Q ss_pred HHHHHHHHhC-------CCCccccccccccccccccccccccccccC
Q 021164 33 KLMNYMLKNG-------QGCWSDVARNAGLQRCGKSCRLRWINYLRP 72 (316)
Q Consensus 33 ~L~~lV~kyG-------~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p 72 (316)
+|..+|.+.| .+.|..||+.++... +..++..|.++|-|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 5777787776 346999999987433 77888888888865
No 106
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=54.84 E-value=8.4 Score=30.89 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=30.4
Q ss_pred HHHHHHHHhCC--------ChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 86 LIIHLHSLLGN--------RWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 86 ~Llelv~~~G~--------kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
.|..+|.++|+ .|.+||..|.--....+|..|..+|-..
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 58888888884 7999999873333789999998887653
No 107
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=54.00 E-value=18 Score=28.20 Aligned_cols=41 Identities=12% Similarity=0.288 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCC--------ChHHhhccCCC-CC---HHHHHHHHHHHhHhhh
Q 021164 85 ELIIHLHSLLGN--------RWSQIAARLPG-RT---DNEIKNFWNSTIKKRL 125 (316)
Q Consensus 85 ~~Llelv~~~G~--------kW~~IAk~lpg-RT---~~q~KnRW~~llrk~~ 125 (316)
-.|..+|.+.|+ .|.+||+.|.- .+ ..++|..|..+|-...
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE 99 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFE 99 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHH
Confidence 457778888883 79999999822 22 4688999988886543
No 108
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=53.11 E-value=3.3 Score=32.72 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=30.1
Q ss_pred HHHHHHHHHhC-------CCCccccccccccccc----cccccccccccccCC
Q 021164 32 DKLMNYMLKNG-------QGCWSDVARNAGLQRC----GKSCRLRWINYLRPD 73 (316)
Q Consensus 32 e~L~~lV~kyG-------~~nW~~IA~~l~~gRt----~kQCr~RW~n~L~p~ 73 (316)
-+|..+|.+.| .+.|..||+.++...+ +.+++..|.++|-|-
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 45777888776 2469999999874332 356788888888764
No 109
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=52.97 E-value=16 Score=27.11 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 82 QEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 82 EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
+.+..++.++-..|-.-.+||+.| |-+...|+.+....+++-
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 556667777667788999999999 999999999887766554
No 110
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=52.84 E-value=16 Score=29.35 Aligned_cols=40 Identities=15% Similarity=0.294 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCC--------ChHHhhccCCCC--C--HHHHHHHHHHHhHhh
Q 021164 85 ELIIHLHSLLGN--------RWSQIAARLPGR--T--DNEIKNFWNSTIKKR 124 (316)
Q Consensus 85 ~~Llelv~~~G~--------kW~~IAk~lpgR--T--~~q~KnRW~~llrk~ 124 (316)
-+|..+|.++|+ .|.+||..|.-- + ..++|..|..+|-..
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 457888888883 799999987221 1 568899998888653
No 111
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=50.38 E-value=2.9 Score=33.82 Aligned_cols=41 Identities=20% Similarity=0.354 Sum_probs=28.5
Q ss_pred HHHHHHHHHhC-------CCCccccccccccccc---cccccccccccccC
Q 021164 32 DKLMNYMLKNG-------QGCWSDVARNAGLQRC---GKSCRLRWINYLRP 72 (316)
Q Consensus 32 e~L~~lV~kyG-------~~nW~~IA~~l~~gRt---~kQCr~RW~n~L~p 72 (316)
-+|..+|.+.| .+.|..||+.++...+ +.+.+..|.++|-|
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 35778888877 3469999999874332 34567777777764
No 112
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=46.00 E-value=30 Score=24.41 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 79 FSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 79 WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
+|+.| ..++.++ ..|-.-.+||+.+ |-+...|+.+...++++
T Consensus 17 L~~~e-~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERE-RQVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHH-HHHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34444 4455555 6688899999999 88999999988776655
No 113
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=44.36 E-value=28 Score=28.22 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCC--------ChHHhhccC--CCC---CHHHHHHHHHHHhHhhhh
Q 021164 84 EELIIHLHSLLGN--------RWSQIAARL--PGR---TDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 84 D~~Llelv~~~G~--------kW~~IAk~l--pgR---T~~q~KnRW~~llrk~~k 126 (316)
--+|..+|.++|+ .|.+||..| +.. ....+|..|..+|-..-.
T Consensus 54 L~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~ 109 (128)
T 1c20_A 54 LYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYEC 109 (128)
T ss_dssp HHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3467788888884 799999987 332 267899999988876544
No 114
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=44.16 E-value=30 Score=28.13 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=32.0
Q ss_pred HHHHHHHHhCC--------ChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 86 LIIHLHSLLGN--------RWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 86 ~Llelv~~~G~--------kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
+|..+|.+.|+ .|.+||..|.--....+|..|..+|-..-.-
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~~ 101 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYERH 101 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHHH
Confidence 47777777773 6999999873333899999999999876654
No 115
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=43.02 E-value=33 Score=27.89 Aligned_cols=32 Identities=13% Similarity=0.021 Sum_probs=26.1
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
.|-...+||+.+ |-+...|+++....+++-.+
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 467899999999 89999999988777665443
No 116
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=42.76 E-value=31 Score=25.96 Aligned_cols=45 Identities=27% Similarity=0.271 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 78 AFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 78 ~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
..|+.|-+. +.++ ..|-.-.+||+.+ |-+...|+.+...++++-.
T Consensus 27 ~Lt~~e~~v-l~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTL-LGLL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHH-HHHH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHH-HHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHc
Confidence 456555544 4555 7788999999999 8899999998877766543
No 117
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=42.33 E-value=4.6 Score=32.86 Aligned_cols=41 Identities=22% Similarity=0.425 Sum_probs=26.5
Q ss_pred HHHHHHHHHhC-------CCCccccccccccccc---cccccccccccccC
Q 021164 32 DKLMNYMLKNG-------QGCWSDVARNAGLQRC---GKSCRLRWINYLRP 72 (316)
Q Consensus 32 e~L~~lV~kyG-------~~nW~~IA~~l~~gRt---~kQCr~RW~n~L~p 72 (316)
-+|..+|.+.| .+.|..||+.++...+ +.+.+..|.++|.|
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 35777787776 3469999999874332 23456666666543
No 118
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=41.89 E-value=22 Score=28.89 Aligned_cols=32 Identities=16% Similarity=0.067 Sum_probs=26.3
Q ss_pred HhCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 93 LLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 93 ~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
..|-...+||+.+ |-|...|+++....+++-.
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 3477899999999 8999999999887776544
No 119
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=41.73 E-value=3.4 Score=33.79 Aligned_cols=41 Identities=22% Similarity=0.521 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCC-------CCccccccccccccc----cccccccccccccC
Q 021164 32 DKLMNYMLKNGQ-------GCWSDVARNAGLQRC----GKSCRLRWINYLRP 72 (316)
Q Consensus 32 e~L~~lV~kyG~-------~nW~~IA~~l~~gRt----~kQCr~RW~n~L~p 72 (316)
-+|..+|.+.|. +.|..||+.++...+ +.+++..|.++|-|
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 357777887772 459999999874433 34567778888765
No 120
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=41.37 E-value=19 Score=29.68 Aligned_cols=45 Identities=7% Similarity=0.015 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 82 QEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 82 EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
+-|.+|+++.++-| -.|.+||+.+ |-|...|+.|++.+.+..+-+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 56788999888877 4799999999 999999999999998887644
No 121
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=41.36 E-value=33 Score=26.89 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHH
Q 021164 80 SPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKN 115 (316)
Q Consensus 80 T~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~Kn 115 (316)
++.-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 66677888888899999999999999 777766644
No 122
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=41.30 E-value=26 Score=28.56 Aligned_cols=75 Identities=13% Similarity=0.262 Sum_probs=49.2
Q ss_pred ccCCCHHHH--HHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC----
Q 021164 23 KGLWSPEED--DKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGN---- 96 (316)
Q Consensus 23 Kg~WT~EED--e~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~---- 96 (316)
+.+|.+.+. +.|.+++++.|.. ...|. .++ +|.-. --+|..+|.++|+
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rGtp-l~~~P-~i~-gk~lD-----------------------L~~Ly~~V~~~GG~~~V 60 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQGIT-MDELP-LIG-GCELD-----------------------LACFFRLINEMGGMQQV 60 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTCC-CSSCC-EET-TEECC-----------------------HHHHHHHHHHTTSHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcCCC-CCCCC-cCC-CEecc-----------------------HHHHHHHHHHcCcHHHh
Confidence 456988776 4577777887764 44443 233 33221 2357788888884
Q ss_pred ----ChHHhhccC--CCC---CHHHHHHHHHHHhHh
Q 021164 97 ----RWSQIAARL--PGR---TDNEIKNFWNSTIKK 123 (316)
Q Consensus 97 ----kW~~IAk~l--pgR---T~~q~KnRW~~llrk 123 (316)
.|.+||..| |.- ....+|..|..+|-.
T Consensus 61 t~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 61 TDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred cccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 799999987 332 256889999877754
No 123
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=41.26 E-value=46 Score=32.27 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHhhccCC-CCCHHHHHHHHHHHhHhhh
Q 021164 76 RGAFSPQEEELIIHLHSLLGN-RWSQIAARLP-GRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~G~-kW~~IAk~lp-gRT~~q~KnRW~~llrk~~ 125 (316)
.+.||.-|=..++.+..+||. +-..||..|. |+|...|+ +|...+=.+.
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry 173 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNI 173 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTC
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhh
Confidence 457999999999999999995 5999999996 99999999 4544444433
No 124
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=41.07 E-value=30 Score=25.51 Aligned_cols=43 Identities=9% Similarity=0.163 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHH----hCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 82 QEEELIIHLHSL----LGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 82 EED~~Llelv~~----~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
+.+..++.+.-- .|-.+.+||..+ |-|...|+.+....+++-.
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 445556666544 577899999999 9999999998777666543
No 125
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=40.85 E-value=3.6 Score=33.57 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=27.1
Q ss_pred HHHHHHHHHhC-------CCCccccccccccccc---cccccccccccccC
Q 021164 32 DKLMNYMLKNG-------QGCWSDVARNAGLQRC---GKSCRLRWINYLRP 72 (316)
Q Consensus 32 e~L~~lV~kyG-------~~nW~~IA~~l~~gRt---~kQCr~RW~n~L~p 72 (316)
-+|..+|.+.| .+.|..||+.++...+ +.+++..|.++|.|
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 35677777776 2369999998874432 34567777777654
No 126
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=39.80 E-value=22 Score=30.88 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=19.9
Q ss_pred CCCcccCCCHHHHHHHH--------HHHHHhC
Q 021164 19 NKLRKGLWSPEEDDKLM--------NYMLKNG 42 (316)
Q Consensus 19 ~~lkKg~WT~EEDe~L~--------~lV~kyG 42 (316)
|.-..|-||+|+|+.|. +++++||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 45678999999999985 6778887
No 127
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=39.47 E-value=33 Score=23.69 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 77 GAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 77 ~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
..+|+.|-+.|. ++ ..|-.-.+||+.+ |-+...|+.+...+.++-
T Consensus 10 ~~L~~~e~~il~-~~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFE-LL-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH-HH-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 356666665554 44 6678899999999 889999999887766543
No 128
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=39.46 E-value=34 Score=24.95 Aligned_cols=44 Identities=30% Similarity=0.386 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 78 AFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 78 ~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
..|+.|-+ ++.++ ..|-.-.+||+.+ |-+...|+.+...++++-
T Consensus 21 ~Lt~~e~~-vl~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERD-ILKLI-AQGLPNKMIARRL-DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHH-HHHHH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 45665554 44454 6788999999999 899999999887766553
No 129
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=39.28 E-value=50 Score=24.80 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=35.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 75 KRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 75 kk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
.....|+.|-+.|.-+ . .|-.-.+||..| |-+...|+.+...++++
T Consensus 26 ~~~~Lt~rE~~Vl~l~-~-~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEV-E-KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHH-H-TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHH-H-cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3446787777665544 4 799999999999 89999999998887765
No 130
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=38.56 E-value=53 Score=21.90 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 84 EELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 84 D~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
+..++.+ -..|-.-.+||+.+ |-+...|+.+...++++-
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 4456666 36688899999999 899999999888776653
No 131
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=37.75 E-value=38 Score=28.15 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCC--------ChHHhhccC--CCC---CHHHHHHHHHHHhHhhhhc
Q 021164 85 ELIIHLHSLLGN--------RWSQIAARL--PGR---TDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 85 ~~Llelv~~~G~--------kW~~IAk~l--pgR---T~~q~KnRW~~llrk~~kk 127 (316)
-+|..+|.+.|+ .|.+||..| +.. ....+|..|..+|-..-..
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~ 122 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECE 122 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 457788888884 799999987 332 2578999999888765443
No 132
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=37.20 E-value=1.4e+02 Score=22.85 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=53.1
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccC------CCCCCCCCHHHHHHHHHHHHHhCCC
Q 021164 24 GLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRP------DLKRGAFSPQEEELIIHLHSLLGNR 97 (316)
Q Consensus 24 g~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p------~lkk~~WT~EED~~Llelv~~~G~k 97 (316)
...|.++-..++.++. -|. .-..||+.++ .+...++ ||...... .......+++++..|+++...-+-.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 4688888888888764 453 3689999886 4444443 33322211 1122357888888888873332234
Q ss_pred hHHhhccCCC--CCHHHHHHHH
Q 021164 98 WSQIAARLPG--RTDNEIKNFW 117 (316)
Q Consensus 98 W~~IAk~lpg--RT~~q~KnRW 117 (316)
-.+|+..| | -+...|....
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHHHH
Confidence 57888888 4 5666665433
No 133
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=36.40 E-value=16 Score=27.99 Aligned_cols=38 Identities=18% Similarity=0.440 Sum_probs=26.8
Q ss_pred HHHHHHHHhC--------CChHHhhccC--CC-C-CHHHHHHHHHHHhHh
Q 021164 86 LIIHLHSLLG--------NRWSQIAARL--PG-R-TDNEIKNFWNSTIKK 123 (316)
Q Consensus 86 ~Llelv~~~G--------~kW~~IAk~l--pg-R-T~~q~KnRW~~llrk 123 (316)
.|..+|.+.| +.|.+|++.| +. - ...++|..|..+|-.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 4777788877 4799999986 22 1 256788888766654
No 134
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=36.31 E-value=54 Score=26.18 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 82 QEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 82 EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
+-|..|+.+.++.| -.+.+||+.+ |-+...|..|.+.+.+..+-.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 45667888888777 4799999999 889999999999998876543
No 135
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=36.11 E-value=89 Score=24.69 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=47.5
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc------ccCCCC----CCCCCHHHHHHHHHHHH
Q 021164 23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINY------LRPDLK----RGAFSPQEEELIIHLHS 92 (316)
Q Consensus 23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~------L~p~lk----k~~WT~EED~~Llelv~ 92 (316)
....|.++-.+++.++. .|. ....||+.++ .+...+ .||... +.+.-. ....++++.+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lg--is~~TV-~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLR--VSHGCV-SKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHH-HHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHH-HHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34699999988888874 454 3789999886 433333 334332 223221 23478888888888887
Q ss_pred HhC-CChHHhhccC
Q 021164 93 LLG-NRWSQIAARL 105 (316)
Q Consensus 93 ~~G-~kW~~IAk~l 105 (316)
+.. -.-.+|+..+
T Consensus 105 ~~~~~s~~~i~~~l 118 (149)
T 1k78_A 105 QNPTMFAWEIRDRL 118 (149)
T ss_dssp HCTTCCHHHHHHHH
T ss_pred hCcchhHHHHHHHH
Confidence 653 2234555544
No 136
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=35.60 E-value=49 Score=25.87 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 82 QEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 82 EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
+.+..++.++...|-...+||+.+ |-+...|+.+....+++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455666677667788999999999 89999999887766554
No 137
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=35.14 E-value=5.8 Score=33.26 Aligned_cols=53 Identities=25% Similarity=0.453 Sum_probs=33.0
Q ss_pred HHHHHHHHHhC-------CCCccccccccccccc----cccccccccccccCC--CCCCCCCHHHH
Q 021164 32 DKLMNYMLKNG-------QGCWSDVARNAGLQRC----GKSCRLRWINYLRPD--LKRGAFSPQEE 84 (316)
Q Consensus 32 e~L~~lV~kyG-------~~nW~~IA~~l~~gRt----~kQCr~RW~n~L~p~--lkk~~WT~EED 84 (316)
-+|..+|.+.| .+.|..||..++...+ +.+++..|.++|-|- ..++.=.++|-
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~ 132 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNEL 132 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 35667777766 2469999999874332 346778888888762 23344344443
No 138
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=34.72 E-value=38 Score=25.01 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 78 AFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 78 ~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
..|+.|-+. +.++ ..|-.-.+||+.| |-+...|+.+...++++-
T Consensus 29 ~Lt~~e~~v-l~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 29 MLTEREMEI-LLLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GCCSHHHHH-HHHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHH-HHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 345555544 4554 6788999999999 899999999887776653
No 139
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=33.82 E-value=44 Score=26.04 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=24.8
Q ss_pred hCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164 94 LGNRWSQIAARLPGRTDNEIKNFWNSTIKKR 124 (316)
Q Consensus 94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~ 124 (316)
.|-...+||+.| |-|...|+++....+++-
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 467899999999 899999999887666543
No 140
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=33.55 E-value=54 Score=27.38 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164 83 EEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125 (316)
Q Consensus 83 ED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~ 125 (316)
.+..++.++-..|-...+||+.+ |-|...|+.+....+++-.
T Consensus 191 ~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 191 REKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Confidence 33444444444578899999999 9999999998876665543
No 141
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=33.03 E-value=45 Score=26.88 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 82 QEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 82 EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
+++..++.+....|-.-.+||..+ |-+...|+++....+++-.+.
T Consensus 96 ~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~Lr~~ 140 (157)
T 2lfw_A 96 PLSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAEIEKQ 140 (157)
T ss_dssp TTHHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHH
Confidence 445555666555688899999999 999999999987766655443
No 142
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=32.91 E-value=34 Score=27.25 Aligned_cols=31 Identities=23% Similarity=0.498 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCCChHHhhccCCCCCHHHHHH
Q 021164 84 EELIIHLHSLLGNRWSQIAARLPGRTDNEIKN 115 (316)
Q Consensus 84 D~~Llelv~~~G~kW~~IAk~lpgRT~~q~Kn 115 (316)
|..|..+....|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567778889999999999999 777766643
No 143
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=32.24 E-value=25 Score=27.54 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=29.3
Q ss_pred HHHHHHHHHhC--------CChHHhhccC--CCC---CHHHHHHHHHHHhHhh
Q 021164 85 ELIIHLHSLLG--------NRWSQIAARL--PGR---TDNEIKNFWNSTIKKR 124 (316)
Q Consensus 85 ~~Llelv~~~G--------~kW~~IAk~l--pgR---T~~q~KnRW~~llrk~ 124 (316)
-.|..+|.++| +.|.+||..| +.. ...++|..|..+|-..
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 45778888888 4799999986 222 2468999998888653
No 144
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=32.11 E-value=44 Score=26.75 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCChHHhhccCCCCCHHHHH
Q 021164 86 LIIHLHSLLGNRWSQIAARLPGRTDNEIK 114 (316)
Q Consensus 86 ~Llelv~~~G~kW~~IAk~lpgRT~~q~K 114 (316)
.|..+....|..|..+|+.| |=+..+|.
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId 53 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 46666788999999999998 66666553
No 145
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=31.80 E-value=49 Score=27.65 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 81 PQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 81 ~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
.+-|..|+++.++.| -.+.+||+.+ |-+...|+.|.+.+.+..+-.
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 356778888888877 4799999999 889999999999998876543
No 146
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=30.48 E-value=57 Score=25.52 Aligned_cols=31 Identities=32% Similarity=0.515 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCChHHhhccCCCCCHHHHHH
Q 021164 84 EELIIHLHSLLGNRWSQIAARLPGRTDNEIKN 115 (316)
Q Consensus 84 D~~Llelv~~~G~kW~~IAk~lpgRT~~q~Kn 115 (316)
+..|..+....|.+|..+|++| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4556667778899999999999 777766644
No 147
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=30.43 E-value=42 Score=26.87 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=26.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHH
Q 021164 71 RPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIK 114 (316)
Q Consensus 71 ~p~lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~K 114 (316)
.+.+-...=|.+ .|..+....|..|..+|+.| |=+..+|.
T Consensus 14 ~~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId 53 (114)
T 2of5_A 14 PSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (114)
T ss_dssp --CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHH
T ss_pred CchhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 333444444544 45666788999999999998 76666553
No 148
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=30.01 E-value=40 Score=29.20 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=19.4
Q ss_pred ccccccccccc-CCCCCCCCCHHHHHHHH
Q 021164 61 SCRLRWINYLR-PDLKRGAFSPQEEELII 88 (316)
Q Consensus 61 QCr~RW~n~L~-p~lkk~~WT~EED~~Ll 88 (316)
++-+.|..-.. |.-..|-||+|+|+.|.
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 34444444344 56788999999999886
No 149
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=29.26 E-value=64 Score=25.84 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 82 QEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 82 EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
+-|..|+.+.++.| -.+.+||+.+ |-+...|..|.+.+.+..+-.
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 45667888888877 4799999999 889999999999998876543
No 150
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=29.22 E-value=99 Score=18.76 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHH
Q 021164 78 AFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFW 117 (316)
Q Consensus 78 ~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW 117 (316)
..++++-..++.++ .-|-...+||+.| |-+...|+...
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45666666777765 4588899999999 78888776543
No 151
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=28.60 E-value=20 Score=30.04 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=27.2
Q ss_pred cccccccccccccccccccccccccCCCCCCCCCHHHHHHHHH
Q 021164 47 SDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIH 89 (316)
Q Consensus 47 ~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Lle 89 (316)
..||..+. |+|+.+||+.+. + ...+|+||++.|.+
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 67888887 999999998652 3 23599999987654
No 152
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=28.12 E-value=83 Score=23.48 Aligned_cols=35 Identities=14% Similarity=0.047 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHH
Q 021164 82 QEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFW 117 (316)
Q Consensus 82 EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW 117 (316)
-|.+.|.+++.++|++.++.|+.| |=+...+..|-
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rkl 85 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 477888999999999999999998 77766665443
No 153
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=27.28 E-value=74 Score=22.06 Aligned_cols=33 Identities=12% Similarity=0.038 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHH
Q 021164 82 QEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKN 115 (316)
Q Consensus 82 EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~Kn 115 (316)
-|.+.|.++...+|++.++.|+.+ |=+...+..
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 477888999999999999999988 555554433
No 154
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=27.25 E-value=80 Score=24.76 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 82 QEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 82 EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
+.+..++.++...|-.-.+||+.+ |-|...|+.+....+++
T Consensus 25 ~~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 25 DKQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 445566777777899999999999 99999999888766654
No 155
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=27.02 E-value=1.3e+02 Score=23.62 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHH
Q 021164 76 RGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWN 118 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~ 118 (316)
....|.++-..++.++. -|..-.+||+.| |.+...|....+
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~rw~~ 70 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSKILG 70 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHHH
Confidence 45789999999999884 688899999999 788877765433
No 156
>3au4_B Netrin receptor DCC; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3pzd_B
Probab=26.98 E-value=15 Score=26.80 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=17.8
Q ss_pred ccccccccccccccccchHHHhhhCC
Q 021164 279 GVGNLLQGEEIKLGEWDFEELMKDVS 304 (316)
Q Consensus 279 ~~~~~~~~~~~~~g~w~~~~~~~~~~ 304 (316)
+.+..+..|+|.--==.||+||||+.
T Consensus 31 ~~~~~~~teeLs~eMAnLEGLMkdLn 56 (63)
T 3au4_B 31 DSANVYEQDDLSEQMASLEGLMKQLN 56 (63)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHH
Confidence 34455566776655567999999864
No 157
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=26.48 E-value=61 Score=23.77 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHhC---C-ChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 80 SPQEEELIIHLHSLLG---N-RWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 80 T~EED~~Llelv~~~G---~-kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
|.+-|..|+++..+.| . .=.+||+.+ |-+...|..+-..+.+..+-.
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~L-gvs~~tV~~~L~~L~~~G~I~ 62 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKKGKLQ 62 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHH-CCCHHHHHHHHHHHHHHTSEE
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 5667788999999998 3 579999999 788888988888887766543
No 158
>2xsa_A Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION, O-GLCNACASE, glycosyl hydrolase, hydrolase; 2.00A {Oceanicola granulosus} PDB: 2xsb_A*
Probab=26.48 E-value=1.2e+02 Score=29.92 Aligned_cols=56 Identities=16% Similarity=0.354 Sum_probs=41.6
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHH
Q 021164 23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSL 93 (316)
Q Consensus 23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~ 93 (316)
..+||.|+-..|++...+++.. .-| ..| +.+---|.+| +.+++++|-+.|-+|++.
T Consensus 11 G~PWS~e~R~~l~~f~g~~kmN--tYi--YAP--KDDpyhr~~W---------Re~Yp~eel~~l~eLv~~ 66 (447)
T 2xsa_A 11 GRDWRRDERATVMDWIAAAGMN--TYI--YGP--KDDVHVRARW---------RVPYDAAGLARLTELRDA 66 (447)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCC--EEE--ECC--TTCTTTTTTT---------TSCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCc--eEE--Ecc--CCChHHHHhh---------cccCCHHHHHHHHHHHHH
Confidence 3589999999999999999976 333 224 4444455666 458888988888888865
No 159
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=25.68 E-value=15 Score=28.69 Aligned_cols=45 Identities=16% Similarity=0.372 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCCccccccccccccccccccccccccccCCC-------CCCCCCHHHHHHHH
Q 021164 31 DDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDL-------KRGAFSPQEEELII 88 (316)
Q Consensus 31 De~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~l-------kk~~WT~EED~~Ll 88 (316)
+..|.++|..|| |..+++.+. -.|.. -+|.+ ++.+|..+.-+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-----I~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-----INCFK-----KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-----SSSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-----cccCC-----CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 567889999998 999998776 44543 36654 46788877666553
No 160
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=24.60 E-value=1.2e+02 Score=23.14 Aligned_cols=45 Identities=29% Similarity=0.362 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164 76 RGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK 123 (316)
Q Consensus 76 k~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk 123 (316)
....|+.|-+.| .++ ..|-.-.+||+.| |-+...|+.+...++++
T Consensus 32 ~~~Lt~re~~Vl-~l~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVL-RLF-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHH-HHH-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 446777777665 444 3688999999999 88999999988777665
No 161
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=24.41 E-value=1e+02 Score=23.01 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhC----CChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 81 PQEEELIIHLHSLLG----NRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 81 ~EED~~Llelv~~~G----~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
.+-++.|++++.+.| -.=.+||+.| |-+...|+.+-+.|.+..+-.
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~L-gvsr~tV~~~L~~Le~~G~I~ 58 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 456788999999998 2579999999 788889998888887765543
No 162
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=23.22 E-value=94 Score=24.79 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 82 QEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 82 EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
+-|..|+.+.++.| -.+.+||+.+ |-+...|..|.+.+.+..+-.
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 53 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQF-GVSPETIHVRVEKMKQAGIIT 53 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHcCCcc
Confidence 44677888888877 4799999999 889999999999998876543
No 163
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=22.98 E-value=91 Score=25.24 Aligned_cols=44 Identities=7% Similarity=0.021 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164 82 QEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126 (316)
Q Consensus 82 EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k 126 (316)
+-|..|+.+.++.| -.+.+||+.+ |-+...|..|.+.+.+..+-
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 54 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERV-ALSPSPCLRRLKQLEDAGIV 54 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 45667888888777 4799999999 88999999999999887654
No 164
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=20.62 E-value=1.1e+02 Score=23.84 Aligned_cols=44 Identities=14% Similarity=0.316 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164 83 EEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127 (316)
Q Consensus 83 ED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk 127 (316)
-|..|+.+....| -.+.+||+.+ |-+...|..+.+.+.+..+-.
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL-GISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEe
Confidence 4667777777766 4799999999 899999999999998876643
Done!