BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021166
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 249 bits (637), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 186/322 (57%), Gaps = 16/322 (4%)
Query: 1 MGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXXXXXRTLE-QNATRLLHKWQYIAD 59
MGEDLFWA WKIKL + +E +L +KWQ IA
Sbjct: 195 MGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAY 254
Query: 60 RVHEDLFISPFLYREN---------STMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKED 110
+ +DL + +N +T+ F+S+F GGVD L+ LM +SFPELG+ K D
Sbjct: 255 KYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTD 314
Query: 111 CREMSFIESIVYLDGFKIRESIN--ADVLINERFVKR-FFIGKADFVTVPIPVEALEGAY 167
C+E S+I++ ++ G + N ++L++ K+ F K D+V PIP A+
Sbjct: 315 CKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKIL 374
Query: 168 DLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRH 227
+ YEED G+ V +PYGG M EISES IPFPHRAG +Y L Y A W+ D ++H
Sbjct: 375 EKLYEEDVGA-GMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEKQEDN--EKH 431
Query: 228 LNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRL 287
+N VR ++N+ TPYV++NPR AY+N RDLD+G N + +A +WG+KYF NF RL
Sbjct: 432 INWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEKYFGKNFNRL 491
Query: 288 VQVKTMVDPEDFFRNEQSIPPF 309
V+VKT VDP +FFRNEQSIPP
Sbjct: 492 VKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 165/310 (53%), Gaps = 12/310 (3%)
Query: 1 MGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXXXXXRTLEQNATRLLHKWQYIADR 60
MGED FWA W++KL + +++ A L+ KWQ +A
Sbjct: 198 MGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIKEGAIDLVTKWQTVAPA 257
Query: 61 VHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESI 120
+ +DL I + + +F +L+LG L+ LM FPELG+ C+EM++IES+
Sbjct: 258 LPDDLMIRIMAMGQGA----MFEALYLGTCKDLVLLMTARFPELGMNATHCKEMTWIESV 313
Query: 121 VYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGL 180
Y+ + ++ D+L +K F K+D+V PIP E + + G+
Sbjct: 314 PYIP-MGPKGTVR-DLLNRTSNIKAFGKYKSDYVLEPIPKSDWEKIFTWLVKPG---AGV 368
Query: 181 LVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTP 240
++ PYGG ++ + ES PFP R+G ++ + Y W + A R ++++MTP
Sbjct: 369 MIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYW--FGEGAAALPTQWTRDIYDFMTP 426
Query: 241 YVTKNPRAAYINNRDLDIGTNNKLGHTSV-QEASVWGKKYFKNNFYRLVQVKTMVDPEDF 299
YV+KNPR AY+N RDLD+G N +G+ S VWG+KYFK NF RL + K +DPED+
Sbjct: 427 YVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKGNFERLARTKGKIDPEDY 486
Query: 300 FRNEQSIPPF 309
FRNEQSIPP
Sbjct: 487 FRNEQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 159/310 (51%), Gaps = 10/310 (3%)
Query: 1 MGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXXXXXRTLEQNATRLLHKWQYIADR 60
MG+D FWA W++KL +T+ + A +++KWQ +A +
Sbjct: 196 MGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINKWQVVAPQ 255
Query: 61 VHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESI 120
+ DL I +T F +++LG L PLM FPELG+ C EMS+I+SI
Sbjct: 256 LPADLMIRIIAQGPKAT----FEAMYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSI 311
Query: 121 VYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGL 180
++ R+++ D+L + K F K+D+V P P E + + + G+
Sbjct: 312 PFVH-LGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKP--GAGI 368
Query: 181 LVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTP 240
++F PYG +S ES PFPHR G ++ + Y W A L+ + ++NYM P
Sbjct: 369 MIFDPYGATISATPESATPFPHRKGVLFNIQYVNYW--FAPGAAAAPLSWSKDIYNYMEP 426
Query: 241 YVTKNPRAAYINNRDLDIGTNNKLGHTSV-QEASVWGKKYFKNNFYRLVQVKTMVDPEDF 299
YV+KNPR AY N RD+D+G N + S VWG+KYFK NF RL K VDP D+
Sbjct: 427 YVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDY 486
Query: 300 FRNEQSIPPF 309
FRNEQSIPP
Sbjct: 487 FRNEQSIPPL 496
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 154/313 (49%), Gaps = 11/313 (3%)
Query: 1 MGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXXXXXRTLE-QNATRLLHKWQYIAD 59
MGED+FWA WKIKL + + AT LLHKWQ++A+
Sbjct: 187 MGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAE 246
Query: 60 RVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIES 119
+ ED +S + + G FPELGL +ED EMS+ ES
Sbjct: 247 ELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGES 306
Query: 120 IVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYG 179
YL G + +N L +F +R F K D P+P +A G + +E G
Sbjct: 307 FAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE---PNG 360
Query: 180 LLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMT 239
+ +GG+MS+IS PFPHR+G + Y W + + L+ + K++ +M
Sbjct: 361 FIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMK 420
Query: 240 PYVTKNPRAAYINNRDLDIG----TNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVD 295
P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL++ KT++D
Sbjct: 421 PFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLID 480
Query: 296 PEDFFRNEQSIPP 308
P + F + QSIPP
Sbjct: 481 PNNVFNHPQSIPP 493
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 154/313 (49%), Gaps = 11/313 (3%)
Query: 1 MGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXXXXXRTLE-QNATRLLHKWQYIAD 59
MGED+FWA WKIKL + + AT LLHKWQ++A+
Sbjct: 187 MGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAE 246
Query: 60 RVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIES 119
+ ED +S + + G FPELGL +ED EMS+ ES
Sbjct: 247 ELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGES 306
Query: 120 IVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYG 179
YL G + +N L +F +R F K D P+P +A G + +E G
Sbjct: 307 FAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE---PNG 360
Query: 180 LLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMT 239
+ +GG+MS+IS PFPHR+G + Y W + + L+ + K++ +M
Sbjct: 361 FIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMK 420
Query: 240 PYVTKNPRAAYINNRDLDIG----TNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVD 295
P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL++ KT++D
Sbjct: 421 PFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLID 480
Query: 296 PEDFFRNEQSIPP 308
P + F + QSIPP
Sbjct: 481 PNNVFNHPQSIPP 493
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 154/313 (49%), Gaps = 11/313 (3%)
Query: 1 MGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXXXXXRTLE-QNATRLLHKWQYIAD 59
MGED+FWA WKIKL + + AT LLHKWQ++A+
Sbjct: 190 MGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAE 249
Query: 60 RVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIES 119
+ ED +S + + G FPELGL +ED EMS+ ES
Sbjct: 250 ELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGES 309
Query: 120 IVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYG 179
YL G + +N L +F +R F K D P+P +A G + +E G
Sbjct: 310 FAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE---PNG 363
Query: 180 LLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMT 239
+ +GG+MS+IS PFPHR+G + Y W + + L+ + K++ +M
Sbjct: 364 FIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMK 423
Query: 240 PYVTKNPRAAYINNRDLDIG----TNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVD 295
P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL++ KT++D
Sbjct: 424 PFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLID 483
Query: 296 PEDFFRNEQSIPP 308
P + F + QSIPP
Sbjct: 484 PNNVFNHPQSIPP 496
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 154/313 (49%), Gaps = 11/313 (3%)
Query: 1 MGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXXXXXRTLE-QNATRLLHKWQYIAD 59
MGED+FWA WKIKL + + AT LLHKWQ++A+
Sbjct: 193 MGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAE 252
Query: 60 RVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIES 119
+ ED +S + + G FPELGL +ED EMS+ ES
Sbjct: 253 ELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGES 312
Query: 120 IVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYG 179
YL G + +N L +F +R F K D P+P +A G + +E G
Sbjct: 313 FAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE---PNG 366
Query: 180 LLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMT 239
+ +GG+MS+IS PFPHR+G + Y W + + L+ + K++ +M
Sbjct: 367 FIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMK 426
Query: 240 PYVTKNPRAAYINNRDLDIG----TNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVD 295
P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL++ KT++D
Sbjct: 427 PFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLID 486
Query: 296 PEDFFRNEQSIPP 308
P + F + QSIPP
Sbjct: 487 PNNVFNHPQSIPP 499
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 154/313 (49%), Gaps = 11/313 (3%)
Query: 1 MGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXXXXXRTLE-QNATRLLHKWQYIAD 59
MGED+FWA WKIKL + + AT LLHKWQ++A+
Sbjct: 193 MGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAE 252
Query: 60 RVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIES 119
+ ED +S + + G FPELGL +ED EMS+ ES
Sbjct: 253 ELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGES 312
Query: 120 IVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYG 179
YL G + +N L +F +R F K D P+P +A G + +E G
Sbjct: 313 FAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE---PNG 366
Query: 180 LLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMT 239
+ +GG+MS+IS PFPHR+G + Y W + + L+ + K++ +M
Sbjct: 367 FIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMK 426
Query: 240 PYVTKNPRAAYINNRDLDIG----TNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVD 295
P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL++ KT++D
Sbjct: 427 PFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLID 486
Query: 296 PEDFFRNEQSIPP 308
P + F + QSIPP
Sbjct: 487 PNNVFNHPQSIPP 499
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 154/313 (49%), Gaps = 11/313 (3%)
Query: 1 MGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXXXXXRTLE-QNATRLLHKWQYIAD 59
MGED+FWA WKIKL + + AT LLHKWQ++A+
Sbjct: 187 MGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAE 246
Query: 60 RVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIES 119
+ ED +S + + G FPELGL +ED EMS+ ES
Sbjct: 247 ELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGES 306
Query: 120 IVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYG 179
YL G + +N L +F +R F K D P+P +A G + +E G
Sbjct: 307 FAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE---PNG 360
Query: 180 LLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMT 239
+ +GG+MS+IS PFPHR+G + Y W + + L+ + K++ +M
Sbjct: 361 FIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMK 420
Query: 240 PYVTKNPRAAYINNRDLDIG----TNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVD 295
P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL++ KT++D
Sbjct: 421 PFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLID 480
Query: 296 PEDFFRNEQSIPP 308
P + F + QSIPP
Sbjct: 481 PNNVFNHPQSIPP 493
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 154/313 (49%), Gaps = 11/313 (3%)
Query: 1 MGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXXXXXRTLE-QNATRLLHKWQYIAD 59
MGED+FWA WKIKL + + AT LLHKWQ++A+
Sbjct: 212 MGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAE 271
Query: 60 RVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIES 119
+ ED +S + + G FPELGL +ED EMS+ ES
Sbjct: 272 ELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGES 331
Query: 120 IVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYG 179
YL G + +N L +F +R F K D P+P +A G + +E G
Sbjct: 332 FAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE---PNG 385
Query: 180 LLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMT 239
+ +GG+MS+IS PFPHR+G + Y W + + L+ + K++ +M
Sbjct: 386 FIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMK 445
Query: 240 PYVTKNPRAAYINNRDLDIG----TNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVD 295
P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL++ KT++D
Sbjct: 446 PFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLID 505
Query: 296 PEDFFRNEQSIPP 308
P + F + QSIPP
Sbjct: 506 PNNVFNHPQSIPP 518
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 14/152 (9%)
Query: 163 LEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDE 222
++ Y+ D YG + YGGK++ + + P R I + Y W + +E
Sbjct: 380 IQAVYENMTHMDGIDYGAVWLIGYGGKVNTVDPAATALPQRDA-ILKVNYITGWANPGNE 438
Query: 223 AYQRHLNMVRKLFNYM------TPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWG 276
A +HL VRKL+ + P AYIN D D+ + L + V W
Sbjct: 439 A--KHLTWVRKLYADVYAETGGVPVPNDVSDGAYINYPDSDL-ADPGLNTSGVP----WH 491
Query: 277 KKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPP 308
Y+K N RL +VK DP + F + SI P
Sbjct: 492 DLYYKGNHPRLRKVKAAYDPRNHFHHALSIRP 523
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 172 EEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQD-ATDEAYQRHLNM 230
D + +G + + YGGK++ + E+ R +I + A W D A D+A +L
Sbjct: 385 SADSQVWGEVSLYSYGGKVNSVPETATATAQR-DSIIKVWMSATWMDPAHDDA---NLAW 440
Query: 231 VRKLFNYM------TPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNF 284
+R+++ + P +IN D+D+ + + + V W Y+K N+
Sbjct: 441 IREIYREIFATTGGVPVPDDRTEGTFINYPDVDL-VDERWNTSGVP----WYTLYYKGNY 495
Query: 285 YRLVQVKTMVDPEDFFRNEQSIPP 308
RL +VK DP D FR+ S+ P
Sbjct: 496 PRLQKVKARWDPRDVFRHALSVRP 519
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 16/138 (11%)
Query: 179 GLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYM 238
G++ YGGK++ + R +I ++Y W+D + H+ +R+L+ +
Sbjct: 400 GVVALIAYGGKVNAVPADRTAVAQR-DSILKIVYVTTWEDPAQDPV--HVRWIRELYRDV 456
Query: 239 ------TPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKT 292
P AY+N D+D+ + + + V W + Y+K+ + RL VK
Sbjct: 457 YADTGGVPVPGGAADGAYVNYPDVDL-ADEEWNTSGVP----WSELYYKDAYPRLQAVKA 511
Query: 293 MVDPEDFFRNEQS--IPP 308
DP + FR+ S +PP
Sbjct: 512 RWDPRNVFRHALSVRVPP 529
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 14/143 (9%)
Query: 170 FYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLN 229
+ + P ++F YGG+++ S+ P R ++ +++ WQDA E + HL
Sbjct: 365 LHADHPGQASYVMFNSYGGEINRRGPSDAAVPQR-DSVVKSSWFSAWQDA--ELDELHLG 421
Query: 230 MVRKLFN------YMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNN 283
+R L+ P YIN D D+ L + W Y+K+N
Sbjct: 422 WLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADL-----LDPARNRSGEPWHHLYYKDN 476
Query: 284 FYRLVQVKTMVDPEDFFRNEQSI 306
+ RL K DP + F + SI
Sbjct: 477 YARLRSAKRAWDPLNTFHHSMSI 499
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 100/270 (37%), Gaps = 50/270 (18%)
Query: 48 TRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVD---RLLPLMQQSFPEL 104
T LL +AD ++ +F+ R S VC+ LGG+D R + ++ L
Sbjct: 228 TSLLDALNEMADHIYPSVFVGVDENRAPSVTVCVG---HLGGLDIAERDIARLRG----L 280
Query: 105 GLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALE 164
G T D + + +V L NA+V E + +I + + EA+
Sbjct: 281 GRTVSDSIAVRSYDEVVAL---------NAEVGSFEDGMSNLWIDREIAMPNARFAEAIA 331
Query: 165 GAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPF------PHRAGNIYTLLYYAEWQD 218
G D F E P G ++ +PF P R + +L AEW
Sbjct: 332 GNLDKFVSE-----------PASGGSVKLEIEGMPFGNPKRTPARHRDAMGVLALAEWSG 380
Query: 219 ATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKK 278
A +++ + R+L + +NN N+++ V E
Sbjct: 381 AA-PGSEKYPELARELDAALLRAGVTTSGFGLLNN-------NSEVTAEMVAEV------ 426
Query: 279 YFKNNFYRLVQVKTMVDPEDFFRNEQSIPP 308
Y + RL VK DPE+ FR+ +I P
Sbjct: 427 YKPEVYSRLAAVKREYDPENRFRHNYNIDP 456
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 277 KKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPFNLMKDEL 316
K Y++ N +L +K DPED F N S+ P ++ +L
Sbjct: 447 KLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAYLEQKL 486
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 277 KKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPFNLMKDEL 316
K Y++ N +L +K DPED F N S+ P ++ +L
Sbjct: 447 KLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAYLEQKL 486
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 175 PRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEW 216
P GL FFPY + + + ++I P AG + A W
Sbjct: 1 PHMSGLKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASW 42
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 175 PRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEW 216
P GL FFPY + + + ++I P AG + A W
Sbjct: 1 PHMSGLKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASW 42
>pdb|4GNR|A Chain A, 1.0 Angstrom Resolution Crystal Structure Of The
Branched-Chain Amino Acid Transporter Substrate Binding
Protein Livj From Streptococcus Pneumoniae Str. Canada
Mdr_19a In Complex With Isoleucine
Length = 353
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 101 FPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFI-GKADFVTVPIP 159
+ E G R M + IV DGF E + E+ +FI G + V V
Sbjct: 206 YNEAGKIVNQARGMGIDKPIVGGDGFNGEEFVQQATA--EKASNIYFISGFSTTVEVSAK 263
Query: 160 VEALEGAYDLFYEEDPRTYGLLVF 183
+A AY Y E+P T+ L +
Sbjct: 264 AKAFLDAYRAKYNEEPSTFAALAY 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,908,832
Number of Sequences: 62578
Number of extensions: 362046
Number of successful extensions: 773
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 702
Number of HSP's gapped (non-prelim): 21
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)