Query 021166
Match_columns 316
No_of_seqs 121 out of 1260
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:06:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08031 BBE: Berberine and be 99.7 1.7E-17 3.7E-22 106.3 2.9 47 249-307 1-47 (47)
2 PLN02441 cytokinin dehydrogena 99.7 1.5E-14 3.3E-19 137.8 23.3 272 1-310 213-521 (525)
3 TIGR01679 bact_FAD_ox FAD-link 98.9 1.2E-07 2.6E-12 89.5 18.6 52 2-59 148-199 (419)
4 KOG1231 Proteins containing th 98.5 4.9E-07 1.1E-11 82.8 7.7 91 198-308 409-499 (505)
5 PRK11282 glcE glycolate oxidas 98.2 1.8E-06 3.9E-11 79.3 4.9 52 2-58 142-193 (352)
6 COG0277 GlcD FAD/FMN-containin 98.1 7.2E-05 1.6E-09 71.6 14.8 36 273-308 423-458 (459)
7 TIGR01676 GLDHase galactonolac 98.1 5.6E-06 1.2E-10 79.7 6.9 52 1-58 200-251 (541)
8 TIGR01677 pln_FAD_oxido plant- 98.1 4.9E-06 1.1E-10 80.9 5.4 31 1-32 183-213 (557)
9 PLN02805 D-lactate dehydrogena 97.9 2.4E-05 5.3E-10 76.2 6.9 40 2-42 280-319 (555)
10 PRK11230 glycolate oxidase sub 97.8 6E-05 1.3E-09 72.9 6.9 52 2-57 203-254 (499)
11 TIGR01678 FAD_lactone_ox sugar 97.8 5.3E-05 1.1E-09 72.0 6.4 52 1-58 153-204 (438)
12 PLN02465 L-galactono-1,4-lacto 97.5 0.00019 4.1E-09 69.9 5.9 51 2-58 236-286 (573)
13 TIGR00387 glcD glycolate oxida 97.4 0.00041 8.9E-09 65.6 6.6 52 2-57 146-197 (413)
14 PF09265 Cytokin-bind: Cytokin 97.1 0.012 2.5E-07 52.2 12.2 136 147-307 141-281 (281)
15 PRK13905 murB UDP-N-acetylenol 94.6 0.021 4.5E-07 51.6 2.2 30 2-31 163-193 (298)
16 PF04030 ALO: D-arabinono-1,4- 92.8 0.38 8.2E-06 42.4 6.9 28 274-303 227-254 (259)
17 PF02913 FAD-oxidase_C: FAD li 91.4 0.38 8.3E-06 41.5 5.3 64 223-303 182-246 (248)
18 PRK13903 murB UDP-N-acetylenol 83.8 0.74 1.6E-05 42.7 2.3 30 2-31 166-197 (363)
19 PLN02805 D-lactate dehydrogena 83.4 3.3 7.2E-05 40.8 6.7 35 273-307 515-550 (555)
20 TIGR00387 glcD glycolate oxida 82.7 1.9 4.2E-05 40.8 4.7 29 274-302 382-411 (413)
21 PLN00107 FAD-dependent oxidore 81.4 1.2 2.7E-05 38.9 2.6 27 275-303 171-197 (257)
22 KOG1233 Alkyl-dihydroxyacetone 81.3 2.1 4.5E-05 39.5 4.0 40 2-42 312-351 (613)
23 PRK11230 glycolate oxidase sub 79.9 4.4 9.6E-05 39.4 6.1 34 274-307 439-473 (499)
24 PRK11183 D-lactate dehydrogena 79.8 4.6 0.0001 39.4 6.1 39 2-42 237-277 (564)
25 TIGR01678 FAD_lactone_ox sugar 73.7 2.6 5.6E-05 40.3 2.6 22 282-303 417-438 (438)
26 TIGR01677 pln_FAD_oxido plant- 71.9 2.5 5.5E-05 41.6 2.1 22 282-303 482-503 (557)
27 KOG4730 D-arabinono-1, 4-lacto 66.5 3.2 6.8E-05 39.2 1.4 33 2-35 190-222 (518)
28 PRK14652 UDP-N-acetylenolpyruv 65.4 4.9 0.00011 36.4 2.5 30 2-31 167-196 (302)
29 PRK11282 glcE glycolate oxidas 61.7 5.3 0.00012 37.0 2.0 20 284-303 327-346 (352)
30 PF04753 Corona_NS2: Coronavir 52.5 10 0.00022 27.6 1.7 11 14-24 67-77 (109)
31 KOG1262 FAD-binding protein DI 51.0 29 0.00064 32.4 4.8 53 1-57 200-252 (543)
32 KOG4730 D-arabinono-1, 4-lacto 50.4 27 0.00058 33.3 4.5 22 282-303 485-506 (518)
33 PF03941 INCENP_ARK-bind: Inne 49.3 6.4 0.00014 25.9 0.3 34 272-311 18-51 (57)
34 TIGR01676 GLDHase galactonolac 37.5 20 0.00044 35.2 1.8 19 285-303 516-534 (541)
35 PLN02465 L-galactono-1,4-lacto 34.9 21 0.00045 35.4 1.4 27 274-303 538-564 (573)
36 PF04334 DUF478: Protein of un 33.5 40 0.00087 21.9 2.1 20 1-21 9-31 (68)
37 PF03392 OS-D: Insect pheromon 33.3 30 0.00065 25.5 1.7 14 288-301 79-92 (95)
38 PF12108 SF3a60_bindingd: Spli 32.7 27 0.00059 19.4 1.1 13 281-293 10-22 (28)
39 PF14658 EF-hand_9: EF-hand do 26.0 49 0.0011 22.6 1.6 15 285-299 35-49 (66)
40 KOG1232 Proteins containing th 23.2 2.2E+02 0.0048 26.7 5.7 24 11-35 247-270 (511)
41 PF09875 DUF2102: Uncharacteri 21.8 74 0.0016 23.7 2.0 29 282-310 42-70 (104)
42 PF09129 Chol_subst-bind: Chol 21.6 47 0.001 29.6 1.1 23 281-303 292-314 (321)
No 1
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.68 E-value=1.7e-17 Score=106.28 Aligned_cols=47 Identities=40% Similarity=0.752 Sum_probs=34.6
Q ss_pred eeccCCCCCCCCCCCCCCcchhhhchhhHhhhhccHHHHHHhhhhcCCCCCCCCCCCCC
Q 021166 249 AYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIP 307 (316)
Q Consensus 249 ~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~~y~g~n~~rL~~iK~kyDP~~vF~~~~~i~ 307 (316)
+|+||+|.+++ .++|.+.|||+|++||++||++|||+|||+++|+||
T Consensus 1 aY~Ny~d~~~~------------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP------------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG------------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc------------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 59999988764 137999999999999999999999999999999996
No 2
>PLN02441 cytokinin dehydrogenase
Probab=99.67 E-value=1.5e-14 Score=137.83 Aligned_cols=272 Identities=13% Similarity=0.164 Sum_probs=133.6
Q ss_pred CCccchhhhhCCCCCceEEEEEEEEEeeecCCeEEEEEEecccchhHHHHHHHHHHHhhccc----ccceEEEEEe----
Q 021166 1 MGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIADRVH----EDLFISPFLY---- 72 (316)
Q Consensus 1 ~n~DLFWAlRGgGg~nFGVVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~----~~l~~~~~~~---- 72 (316)
.|+|||||+||| +|+|||||++|+|++|+|+......+.|. +..++++..+.+....+ +-+...++..
T Consensus 213 ~n~DLF~Av~Gg-lG~fGIIT~atlrL~Pap~~v~~~~~~y~---~~~~~~~d~~~li~~~~~~~~d~veg~~~p~~~~~ 288 (525)
T PLN02441 213 QNSDLFFAVLGG-LGQFGIITRARIALEPAPKRVRWIRVLYS---DFSTFTRDQERLISRPPENSFDYVEGFVIVNRNGL 288 (525)
T ss_pred CChhHHHhhccC-CCCcEEEEEEEEEEEecCCceEEEEEEcC---CHHHHHHHHHHHHhcCCCCCcceEeEEEEeCCCCc
Confidence 489999999999 68999999999999999986555556664 23444444444332111 1111111111
Q ss_pred ----------e----------cCCeeEEEEE--EEEecC-h----hchhhHhhhhcCCCCCCccccccccHHHHHHHhhc
Q 021166 73 ----------R----------ENSTMVCLFT--SLFLGG-V----DRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDG 125 (316)
Q Consensus 73 ----------~----------~~~~~~~~~~--~~~~g~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (316)
+ ..+.....+. -.|..+ . .+.+++++. |.-+.. ...+..++|.+...-...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~le~~~~~~~~~~~~~~~~~~~ll~~-L~~~~~-~~~~~d~~y~~fl~rv~~ 366 (525)
T PLN02441 289 INNWRSSFFSPSDPVRASSLPSDGGVLYCLEVAKYYDEDTSDTVDQEVESLLKR-LSFIPG-LLFTTDVSYVDFLDRVHV 366 (525)
T ss_pred eeeeecccCCccccchhhccccCCceEEEEEEEEeeCCCCccchhhHHHHHHhh-cCCCCC-CceecccCHHHHHHhhhh
Confidence 0 0122222222 233322 2 233445554 221111 234456788874422211
Q ss_pred ccCcccccccccccccccccceeeecccccCCCCHHHHHHHHHHHhcCCCCceeEEEEEecCccccccCCCCC--Ccccc
Q 021166 126 FKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEI--PFPHR 203 (316)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~t--a~~~R 203 (316)
. ...+-..+.+...+.+-+.|+++.-=.+..+.+++.+.... ..+.+.+.++... .-++.+ ..|--
T Consensus 367 ---~----e~~lr~~G~W~~phPWlnlfvp~s~i~~f~~~v~~~i~~~~--~~G~~liyP~~~~---~~~~~~s~~~P~~ 434 (525)
T PLN02441 367 ---E----ELKLRSKGLWEVPHPWLNLFVPKSRIADFDDGVFKGILLDG--TNGPILVYPLNRS---KWDNRTSAVIPDE 434 (525)
T ss_pred ---H----HHHHhhcCCcCCCCchhheeCcHHHHHHHHHHHHhhccccc--CCCeEEEEecccc---cCCCCCccccCCC
Confidence 0 01110111112233455677653100123333444432221 2366777776521 112222 23433
Q ss_pred cCceEEEEEEEEecCCChHHHHHHHHHHHHHHHhccccCCCCCCceeccCCCCCCCCCCCCCCcchhhhchhhHhhhhcc
Q 021166 204 AGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNN 283 (316)
Q Consensus 204 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~~y~g~n 283 (316)
+ -.|.+.+... ..|..+.-+...+-.+++........ .....|+... .+ .++|. ..||.+
T Consensus 435 ~-~~y~v~~l~~-~~p~~~~~~~~~~~n~~i~~~~~~~g--~~~k~Yl~~~---~~------------~~~W~-~HfG~~ 494 (525)
T PLN02441 435 D-IFYLVALLRS-ALPSGDDLEHLLAQNKEILRFCEKAG--IGVKQYLPHY---TT------------QEEWK-RHFGPK 494 (525)
T ss_pred C-eEEEEEEcCC-CCCCcccHHHHHHHHHHHHHHHHHcC--CceEEcCCCC---CC------------HHHHH-HHhcch
Confidence 3 3344444332 22221123344455555544332221 1123454322 11 23795 577999
Q ss_pred HHHHHHhhhhcCCCCCCCCCCCCCCCC
Q 021166 284 FYRLVQVKTMVDPEDFFRNEQSIPPFN 310 (316)
Q Consensus 284 ~~rL~~iK~kyDP~~vF~~~~~i~~~~ 310 (316)
++|..+.|++|||.+++...|.|....
T Consensus 495 w~~f~~~K~~yDP~~iL~pgq~if~~~ 521 (525)
T PLN02441 495 WETFVRRKAKFDPLAILSPGQRIFNRA 521 (525)
T ss_pred HHHHHHHHhhCCchhhcCCCCccCCCC
Confidence 999999999999999999999998754
No 3
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=98.91 E-value=1.2e-07 Score=89.54 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=38.7
Q ss_pred CccchhhhhCCCCCceEEEEEEEEEeeecCCeEEEEEEecccchhHHHHHHHHHHHhh
Q 021166 2 GEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIAD 59 (316)
Q Consensus 2 n~DLFWAlRGgGg~nFGVVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~ 59 (316)
|||||||+||| +|+|||||++|+|++|..+.. .-.... ...++++.+.++..
T Consensus 148 ~~dLf~a~~g~-~G~lGVIt~vtl~~~p~~~~~-~~~~~~----~~~~~~~~~~~~~~ 199 (419)
T TIGR01679 148 DQDMYLAARVS-LGALGVISQVTLQTVALFRLR-RRDWRR----PLAQTLERLDEFVD 199 (419)
T ss_pred CHHHHHHHHhC-CCceEEEEEEEEEeecceEeE-EEEEec----CHHHHHHHHHHHHh
Confidence 79999999999 689999999999999998632 211111 24566777776653
No 4
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=98.46 E-value=4.9e-07 Score=82.83 Aligned_cols=91 Identities=13% Similarity=0.273 Sum_probs=55.2
Q ss_pred CCcccccCceEEEEEEEEecCCChHHHHHHHHHHHHHHHhccccCCCCCCceeccCCCCCCCCCCCCCCcchhhhchhhH
Q 021166 198 IPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGK 277 (316)
Q Consensus 198 ta~~~R~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~ 277 (316)
+.-||-++..|++.... ...+.++.+...+..+++.+.-.... ..-+.|.-.-.. .+.|.+
T Consensus 409 av~ph~~e~vFy~v~~l--~s~~~~~~e~~~~~n~riv~fc~~ag--~~~keyl~~~~~---------------~e~w~~ 469 (505)
T KOG1231|consen 409 AVTPHAGEGVFYLVILL--RSSGKEEHEELEQLNDRIVKFCLAAG--TCTKEYLPHYGK---------------REYWVE 469 (505)
T ss_pred cccccCCCceEEEEEEe--cCCCchhHHHHHHHHHHHHHHHHHcC--cChhhhcCCccc---------------HHHHHH
Confidence 44677664455544333 22222345556666666554322221 113556543211 236764
Q ss_pred hhhhccHHHHHHhhhhcCCCCCCCCCCCCCC
Q 021166 278 KYFKNNFYRLVQVKTMVDPEDFFRNEQSIPP 308 (316)
Q Consensus 278 ~y~g~n~~rL~~iK~kyDP~~vF~~~~~i~~ 308 (316)
-||+++.++.++|.+|||.++..-.|-|+.
T Consensus 470 -hfG~~w~~f~~~K~~~DPk~Il~PGq~Ifq 499 (505)
T KOG1231|consen 470 -HFGEKWVDFMRIKKAYDPKRILNPGQRIFQ 499 (505)
T ss_pred -HhChhHHHHHHHHhhcCHHHhcCCcccccc
Confidence 569999999999999999999999988873
No 5
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=98.19 E-value=1.8e-06 Score=79.27 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=38.1
Q ss_pred CccchhhhhCCCCCceEEEEEEEEEeeecCCeEEEEEEecccchhHHHHHHHHHHHh
Q 021166 2 GEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIA 58 (316)
Q Consensus 2 n~DLFWAlRGgGg~nFGVVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~vl~~~~~~~ 58 (316)
++||||+++|+ .|+|||||++|||++|.|+.... +.+..+ ..++++.+.++.
T Consensus 142 G~DL~~l~~Gs-~GtLGVitevtlkl~P~p~~~~t--~~~~~~--~~~a~~~~~~~~ 193 (352)
T PRK11282 142 GYDVSRLMAGS-LGTLGVLLEVSLKVLPRPRAELT--LRLEMD--AAEALRKLNEWG 193 (352)
T ss_pred CchHHHHHhhC-CchhhhheEEEEEEEecCceEEE--EEEecC--HHHHHHHHHHHh
Confidence 57999999999 79999999999999999974333 333332 234455566554
No 6
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=98.12 E-value=7.2e-05 Score=71.63 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=30.9
Q ss_pred chhhHhhhhccHHHHHHhhhhcCCCCCCCCCCCCCC
Q 021166 273 SVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPP 308 (316)
Q Consensus 273 ~~~~~~y~g~n~~rL~~iK~kyDP~~vF~~~~~i~~ 308 (316)
..|...|+++.+++|+++|+.|||+|+|+..+-+++
T Consensus 423 ~~~~~~~~~~~~~~~~~~k~~~DP~~i~npg~~~~~ 458 (459)
T COG0277 423 AEFLELEPGEAWALLRAIKRAFDPNGIFNPGKLFRL 458 (459)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCccCCC
Confidence 367777888889999999999999999998877654
No 7
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=98.12 E-value=5.6e-06 Score=79.66 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=40.2
Q ss_pred CCccchhhhhCCCCCceEEEEEEEEEeeecCCeEEEEEEecccchhHHHHHHHHHHHh
Q 021166 1 MGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIA 58 (316)
Q Consensus 1 ~n~DLFWAlRGgGg~nFGVVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~vl~~~~~~~ 58 (316)
.|||||||+||| .|+|||||++|+|+.|.... ....... ...++++.+.++.
T Consensus 200 ~~pdLF~Aargs-lG~LGVItevTLr~~Pa~~l-~~~~~~~----~~~e~l~~~~~~~ 251 (541)
T TIGR01676 200 KDPELFFLARCG-LGGLGVVAEVTLQCVERQEL-VEHTFIS----NMKDIKKNHKKFL 251 (541)
T ss_pred CCHHHHHHHhcC-CCceEeEEEEEEEEEeccce-eEEEEec----CHHHHHHHHHHHH
Confidence 389999999999 68999999999999999873 2222222 2667788887764
No 8
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=98.07 E-value=4.9e-06 Score=80.91 Aligned_cols=31 Identities=19% Similarity=0.123 Sum_probs=28.7
Q ss_pred CCccchhhhhCCCCCceEEEEEEEEEeeecCC
Q 021166 1 MGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPP 32 (316)
Q Consensus 1 ~n~DLFWAlRGgGg~nFGVVT~~~~k~~p~~~ 32 (316)
.|||||||+||| +|+|||||++|+|++|.+.
T Consensus 183 ~~~dLf~a~rgs-lG~lGVVtevTL~~~P~~~ 213 (557)
T TIGR01677 183 DTPNEFNAAKVS-LGVLGVISQVTLALQPMFK 213 (557)
T ss_pred CCHHHHHhhccC-CCccEeeeEEEEEEEcccc
Confidence 378999999999 6999999999999999976
No 9
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=97.90 E-value=2.4e-05 Score=76.19 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=34.0
Q ss_pred CccchhhhhCCCCCceEEEEEEEEEeeecCCeEEEEEEecc
Q 021166 2 GEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRT 42 (316)
Q Consensus 2 n~DLFWAlRGgGg~nFGVVT~~~~k~~p~~~~~~~~~~~~~ 42 (316)
++||||+++|+ .|+|||||++++|++|.|+......+.|+
T Consensus 280 g~dL~~l~~Gs-eGtLGIIT~~tlrl~p~P~~~~~~~~~f~ 319 (555)
T PLN02805 280 GYDLTRLVIGS-EGTLGVITEVTLRLQKIPQHSVVAMCNFP 319 (555)
T ss_pred CccHHHHhccC-CCceEEEEEEEEEeecCCcceEEEEEEcC
Confidence 47999999999 68999999999999999986555555554
No 10
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=97.75 E-value=6e-05 Score=72.85 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=39.5
Q ss_pred CccchhhhhCCCCCceEEEEEEEEEeeecCCeEEEEEEecccchhHHHHHHHHHHH
Q 021166 2 GEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYI 57 (316)
Q Consensus 2 n~DLFWAlRGgGg~nFGVVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~vl~~~~~~ 57 (316)
++||+|+++|+ .|+|||||++|+|++|.|+......+.|+ +..+++++..++
T Consensus 203 g~dl~~l~~Gs-~GtlGIIt~atlkl~p~p~~~~~~~~~f~---~~~~a~~~~~~~ 254 (499)
T PRK11230 203 GFDLLALFTGS-EGMLGVVTEVTVKLLPKPPVARVLLASFD---SVEKAGLAVGDI 254 (499)
T ss_pred ccchHhhhccC-CCccEEEEEEEEEEEcCCcceEEEEEECC---CHHHHHHHHHHH
Confidence 58999999999 68999999999999999985444444443 245555555554
No 11
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=97.75 E-value=5.3e-05 Score=71.98 Aligned_cols=52 Identities=27% Similarity=0.293 Sum_probs=39.9
Q ss_pred CCccchhhhhCCCCCceEEEEEEEEEeeecCCeEEEEEEecccchhHHHHHHHHHHHh
Q 021166 1 MGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIA 58 (316)
Q Consensus 1 ~n~DLFWAlRGgGg~nFGVVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~vl~~~~~~~ 58 (316)
.|+|||||+||| .|+|||||++|+|++|..... . .. .. ....++++.|.+..
T Consensus 153 ~~~dlf~a~~~~-~G~lGIIt~vtl~l~p~~~l~-~-~~--~~-~~~~~~~~~~~~~~ 204 (438)
T TIGR01678 153 RNADVFQAARVS-LGCLGIIVTVTIQVVPQFHLQ-E-TS--FV-STLKELLDNWDSHW 204 (438)
T ss_pred CChhHHHHHhcC-CCceEeeEEEEEEEEeccceE-E-EE--ec-CCHHHHHHHHHHHh
Confidence 378999999999 689999999999999987632 2 11 11 23678888887764
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=97.47 E-value=0.00019 Score=69.86 Aligned_cols=51 Identities=10% Similarity=0.132 Sum_probs=38.8
Q ss_pred CccchhhhhCCCCCceEEEEEEEEEeeecCCeEEEEEEecccchhHHHHHHHHHHHh
Q 021166 2 GEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIA 58 (316)
Q Consensus 2 n~DLFWAlRGgGg~nFGVVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~vl~~~~~~~ 58 (316)
|+|||||+||| .|.|||||++|+|+.|..+. ..-+...+ ..++++.+.++.
T Consensus 236 ~pdLF~aar~g-lG~lGVIteVTLql~P~~~L-~~~~~~~~----~~~~~~~~~~~~ 286 (573)
T PLN02465 236 DPELFRLARCG-LGGLGVVAEVTLQCVPAHRL-VEHTFVSN----RKEIKKNHKKWL 286 (573)
T ss_pred CHHHHhHhhcc-CCCCcEEEEEEEEEEecCce-EEEEEEec----HHHHHHHHHHHH
Confidence 78999999999 68899999999999999873 23233322 456777777664
No 13
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=97.36 E-value=0.00041 Score=65.64 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=38.0
Q ss_pred CccchhhhhCCCCCceEEEEEEEEEeeecCCeEEEEEEecccchhHHHHHHHHHHH
Q 021166 2 GEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYI 57 (316)
Q Consensus 2 n~DLFWAlRGgGg~nFGVVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~vl~~~~~~ 57 (316)
++||+|.+.|+ .|+|||||++++|++|.|+......+.|+ +..+.+++..++
T Consensus 146 g~dl~~l~~Gs-~GtlGiit~~~lkl~p~p~~~~~~~~~f~---~~~~~~~~~~~~ 197 (413)
T TIGR00387 146 GYDLTGLFVGS-EGTLGIVTEATLKLLPKPENIVVALAFFD---SIEKAMQAVYDI 197 (413)
T ss_pred CCChhhhcccC-CccceEEEEEEEEeecCCCccEEEEEECC---CHHHHHHHHHHH
Confidence 46999999999 68999999999999999985444444543 234444444443
No 14
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=97.07 E-value=0.012 Score=52.25 Aligned_cols=136 Identities=15% Similarity=0.216 Sum_probs=62.4
Q ss_pred eeeecccccCCCCHHHHHHHHHHHhc-C--CCCceeEEEEEecCccccccCCCCC-CcccccCceEEEEEEEEecC-CCh
Q 021166 147 FIGKADFVTVPIPVEALEGAYDLFYE-E--DPRTYGLLVFFPYGGKMSEISESEI-PFPHRAGNIYTLLYYAEWQD-ATD 221 (316)
Q Consensus 147 ~~~~s~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~gg~~~~~~~~~t-a~~~R~~~~~~~~~~~~w~~-~~~ 221 (316)
+.+-+.|++ ...+....+.+.. . .....+.+.+.++... .....-+ ..|..+ ..|.+.+...-.. ...
T Consensus 141 HPWlnlfvP----~s~i~dF~~~V~~~il~~~~~~GpiLvYP~~~~--kwd~~~s~v~Pde~-vfylv~lLrsa~P~~~~ 213 (281)
T PF09265_consen 141 HPWLNLFVP----KSRIEDFDRGVFKGILKDDGNSGPILVYPLNRS--KWDTRMSAVIPDED-VFYLVALLRSADPSDGP 213 (281)
T ss_dssp ---EEEEEE----HHHHHHHHHHCCCCCTTTS-S-SEEEEEEEEGG--GS-TTSS----SSS-EEEEEEEEE---TTSSC
T ss_pred Ccceeeecc----hHHHHHHHHHHHHHhhccCCCCceEEEEEeccc--ccCCCCcccCCCCC-eEEEEEEeCCCCCCCCc
Confidence 345667754 4555555544322 1 1123367777776531 1111111 234444 4555555544311 111
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCCCceeccCCCCCCCCCCCCCCcchhhhchhhHhhhhccHHHHHHhhhhcCCCCCCC
Q 021166 222 EAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFR 301 (316)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~~y~g~n~~rL~~iK~kyDP~~vF~ 301 (316)
+.-+...+-.+++++...... .....|+... .+ .++|. ..||+.+.|+++.|++|||.+++.
T Consensus 214 ~~l~~l~~qN~~il~~c~~ag--i~~k~Yl~~~---~t------------~~dW~-~HFG~~W~~f~~~K~~yDP~~IL~ 275 (281)
T PF09265_consen 214 DDLERLLEQNRRILEFCRKAG--IGGKQYLPHY---TT------------QEDWR-RHFGPKWERFVERKRRYDPKAILA 275 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT----EEESS------SS------------HHHHH-HHHGHHHHHHHHHHHHH-TT--B-
T ss_pred hhHHHHHHHHHHHHHHHHHcC--CceEECCCCC---CC------------HHHHH-HHhchHHHHHHHHHHhCCchhhcC
Confidence 123445555555555442221 1123454322 11 24895 577999999999999999999999
Q ss_pred CCCCCC
Q 021166 302 NEQSIP 307 (316)
Q Consensus 302 ~~~~i~ 307 (316)
-.|.|.
T Consensus 276 PGq~IF 281 (281)
T PF09265_consen 276 PGQGIF 281 (281)
T ss_dssp GGG-SS
T ss_pred CCCCCC
Confidence 999884
No 15
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=94.60 E-value=0.021 Score=51.62 Aligned_cols=30 Identities=23% Similarity=0.111 Sum_probs=25.7
Q ss_pred CccchhhhhCCCCC-ceEEEEEEEEEeeecC
Q 021166 2 GEDLFWAIRGSGGS-SFGIIVSWKIKLVAVP 31 (316)
Q Consensus 2 n~DLFWAlRGgGg~-nFGVVT~~~~k~~p~~ 31 (316)
+.||+|+.|++++. .+||||+++||++|..
T Consensus 163 ~~e~~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 163 NEELGFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred HHHcCCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 46899999998555 4899999999999874
No 16
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=92.76 E-value=0.38 Score=42.42 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=19.4
Q ss_pred hhhHhhhhccHHHHHHhhhhcCCCCCCCCC
Q 021166 274 VWGKKYFKNNFYRLVQVKTMVDPEDFFRNE 303 (316)
Q Consensus 274 ~~~~~y~g~n~~rL~~iK~kyDP~~vF~~~ 303 (316)
...+.| .++++..++|+++||+++|.+.
T Consensus 227 ~l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 227 QLRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 344444 8999999999999999999764
No 17
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=91.42 E-value=0.38 Score=41.47 Aligned_cols=64 Identities=11% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCceeccCCCCCCCCCCCCCCcchhhhchhhHhhhhc-cHHHHHHhhhhcCCCCCCC
Q 021166 223 AYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKN-NFYRLVQVKTMVDPEDFFR 301 (316)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~~y~g~-n~~rL~~iK~kyDP~~vF~ 301 (316)
..++..++.+++++.+..+. |.-.-. + -.+ .....|-...+|+ .+.-+++||+.+||+|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~g-----G~is~e-H-G~G----------~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 182 EPERAEALWDELYELVLELG-----GSISAE-H-GIG----------KLKKPYLEEEYGPAALRLMRAIKQAFDPNGILN 244 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHTT------BBSSS-S-GGG----------HHHHHHHCHHCHHHHHHHHHHHHHHH-TTS-BS
T ss_pred HHHHHHHHHHHHHHHHHhcc-----cccccc-c-chh----------hhhHHHHHHhcchHHHHHHHHhhhccCCccCCC
Confidence 45677788888877666553 111110 0 011 1112344455665 6999999999999999997
Q ss_pred CC
Q 021166 302 NE 303 (316)
Q Consensus 302 ~~ 303 (316)
-.
T Consensus 245 PG 246 (248)
T PF02913_consen 245 PG 246 (248)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 18
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=83.84 E-value=0.74 Score=42.70 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=25.0
Q ss_pred CccchhhhhCC--CCCceEEEEEEEEEeeecC
Q 021166 2 GEDLFWAIRGS--GGSSFGIIVSWKIKLVAVP 31 (316)
Q Consensus 2 n~DLFWAlRGg--Gg~nFGVVT~~~~k~~p~~ 31 (316)
+.||+|+.|+. .+++++|||+++||+.|..
T Consensus 166 ~~el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 166 AADLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred HHHcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 57999999994 1346899999999999874
No 19
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=83.43 E-value=3.3 Score=40.82 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=28.5
Q ss_pred chhhHhhhh-ccHHHHHHhhhhcCCCCCCCCCCCCC
Q 021166 273 SVWGKKYFK-NNFYRLVQVKTMVDPEDFFRNEQSIP 307 (316)
Q Consensus 273 ~~~~~~y~g-~n~~rL~~iK~kyDP~~vF~~~~~i~ 307 (316)
..|-..+|| +.++-+++||+.+||+|+++-..-++
T Consensus 515 ~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~ 550 (555)
T PLN02805 515 MKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIP 550 (555)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeC
Confidence 357777788 56999999999999999998775553
No 20
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=82.73 E-value=1.9 Score=40.81 Aligned_cols=29 Identities=14% Similarity=0.323 Sum_probs=23.7
Q ss_pred hhhHhhhh-ccHHHHHHhhhhcCCCCCCCC
Q 021166 274 VWGKKYFK-NNFYRLVQVKTMVDPEDFFRN 302 (316)
Q Consensus 274 ~~~~~y~g-~n~~rL~~iK~kyDP~~vF~~ 302 (316)
.|-...|| ..++-|++||+.+||+|+++-
T Consensus 382 ~~~~~~~~~~~~~~~~~iK~~fDP~~ilNP 411 (413)
T TIGR00387 382 EFMPYKFNEKELETMRAIKKAFDPDNILNP 411 (413)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcCcCCCC
Confidence 45555666 579999999999999999974
No 21
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=81.44 E-value=1.2 Score=38.85 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=22.5
Q ss_pred hhHhhhhccHHHHHHhhhhcCCCCCCCCC
Q 021166 275 WGKKYFKNNFYRLVQVKTMVDPEDFFRNE 303 (316)
Q Consensus 275 ~~~~y~g~n~~rL~~iK~kyDP~~vF~~~ 303 (316)
....| .++++..+||+++||+++|.+.
T Consensus 171 l~~lY--Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 171 AIAKY--KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred HHHHC--cCHHHHHHHHHHhCCCCccCCH
Confidence 33444 7899999999999999999865
No 22
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=81.30 E-value=2.1 Score=39.53 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=31.0
Q ss_pred CccchhhhhCCCCCceEEEEEEEEEeeecCCeEEEEEEecc
Q 021166 2 GEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRT 42 (316)
Q Consensus 2 n~DLFWAlRGgGg~nFGVVT~~~~k~~p~~~~~~~~~~~~~ 42 (316)
.||.---+-|. -|+.||||+.|+|.+|+|..-.-+++.|+
T Consensus 312 GPDihh~IlGS-EGTLGVitEvtiKirPiPe~~ryGS~aFP 351 (613)
T KOG1233|consen 312 GPDIHHIILGS-EGTLGVITEVTIKIRPIPEVKRYGSFAFP 351 (613)
T ss_pred CCCcceEEecc-CcceeEEEEEEEEEeechhhhhcCccccC
Confidence 46666677888 78999999999999999974333455664
No 23
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=79.85 E-value=4.4 Score=39.41 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=27.1
Q ss_pred hhhHhhhh-ccHHHHHHhhhhcCCCCCCCCCCCCC
Q 021166 274 VWGKKYFK-NNFYRLVQVKTMVDPEDFFRNEQSIP 307 (316)
Q Consensus 274 ~~~~~y~g-~n~~rL~~iK~kyDP~~vF~~~~~i~ 307 (316)
.|-...|| +.+.-+++||+.+||+++++-..-++
T Consensus 439 ~~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~~ 473 (499)
T PRK11230 439 NQMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNIP 473 (499)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEeC
Confidence 44455667 67999999999999999998776554
No 24
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=79.80 E-value=4.6 Score=39.39 Aligned_cols=39 Identities=10% Similarity=0.216 Sum_probs=30.2
Q ss_pred Cccchhhh--hCCCCCceEEEEEEEEEeeecCCeEEEEEEecc
Q 021166 2 GEDLFWAI--RGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRT 42 (316)
Q Consensus 2 n~DLFWAl--RGgGg~nFGVVT~~~~k~~p~~~~~~~~~~~~~ 42 (316)
|.||-=-. -|. -|..||+ ..+++|+|.|+....+-+.++
T Consensus 237 naDl~~LfeasGs-eGkLgV~-avrLdtfp~p~~~~vf~ig~n 277 (564)
T PRK11183 237 NADPRRLFEASGC-AGKLAVF-AVRLDTFPAEKNTQVFYIGTN 277 (564)
T ss_pred cCCHHHHhhccCC-CceEEEE-EEEeccccCCCcceEEEEeCC
Confidence 55655544 677 7899999 999999999986666666665
No 25
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=73.74 E-value=2.6 Score=40.27 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=19.7
Q ss_pred ccHHHHHHhhhhcCCCCCCCCC
Q 021166 282 NNFYRLVQVKTMVDPEDFFRNE 303 (316)
Q Consensus 282 ~n~~rL~~iK~kyDP~~vF~~~ 303 (316)
.++++.++|++++||+++|.++
T Consensus 417 P~~~~F~~vr~~~DP~g~F~N~ 438 (438)
T TIGR01678 417 PTLHKFCDIRKKLDPTGVFLNS 438 (438)
T ss_pred cCHHHHHHHHHhhCcccccCCC
Confidence 6788899999999999999763
No 26
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=71.90 E-value=2.5 Score=41.60 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.8
Q ss_pred ccHHHHHHhhhhcCCCCCCCCC
Q 021166 282 NNFYRLVQVKTMVDPEDFFRNE 303 (316)
Q Consensus 282 ~n~~rL~~iK~kyDP~~vF~~~ 303 (316)
.++++.++||+++||+++|.+.
T Consensus 482 P~~~dF~alR~~~DP~g~F~N~ 503 (557)
T TIGR01677 482 PNADKFLKVKDSYDPKGLFSSE 503 (557)
T ss_pred CCHHHHHHHHHhcCCCCccCCH
Confidence 3789999999999999999866
No 27
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=66.55 E-value=3.2 Score=39.21 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=29.4
Q ss_pred CccchhhhhCCCCCceEEEEEEEEEeeecCCeEE
Q 021166 2 GEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVT 35 (316)
Q Consensus 2 n~DLFWAlRGgGg~nFGVVT~~~~k~~p~~~~~~ 35 (316)
.||||-|.|=+ =|-.|||.+.|+++.|.-+...
T Consensus 190 dpe~F~AAkvS-LG~LGVIs~VTl~~vp~Fk~s~ 222 (518)
T KOG4730|consen 190 DPELFNAAKVS-LGVLGVISQVTLSVVPAFKRSL 222 (518)
T ss_pred CHHHHhhhhhc-ccceeEEEEEEEEEEecceeee
Confidence 68999999999 7899999999999999987543
No 28
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=65.45 E-value=4.9 Score=36.37 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=23.3
Q ss_pred CccchhhhhCCCCCceEEEEEEEEEeeecC
Q 021166 2 GEDLFWAIRGSGGSSFGIIVSWKIKLVAVP 31 (316)
Q Consensus 2 n~DLFWAlRGgGg~nFGVVT~~~~k~~p~~ 31 (316)
..|+.|+.|+..=+..||||+++||++|..
T Consensus 167 ~~e~~f~YR~s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 167 AAALGYAYRTCRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred hhhcCcccceeccCCCeEEEEEEEEEecCC
Confidence 468999999963122489999999999853
No 29
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=61.68 E-value=5.3 Score=36.95 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=17.8
Q ss_pred HHHHHHhhhhcCCCCCCCCC
Q 021166 284 FYRLVQVKTMVDPEDFFRNE 303 (316)
Q Consensus 284 ~~rL~~iK~kyDP~~vF~~~ 303 (316)
.+-.++||+++||.++|+..
T Consensus 327 ~~l~~~lK~~fDP~~ilnpg 346 (352)
T PRK11282 327 LRIHRRLKQAFDPAGIFNPG 346 (352)
T ss_pred HHHHHHHHHhcCcccCCCCC
Confidence 68889999999999999854
No 30
>PF04753 Corona_NS2: Coronavirus non-structural protein NS2; InterPro: IPR006841 This is a family of Coronavirus nonstructural protein NS2. Phosphoamino acid analysis confirmed the phosphorylated nature of NS2 and identified serine and threonine as its phosphorylated amino acid residues []. It was also demonstrated that the ns2 gene product is not essential for Murine hepatitis virus replication in transformed murine cells [].
Probab=52.52 E-value=10 Score=27.61 Aligned_cols=11 Identities=36% Similarity=0.754 Sum_probs=9.6
Q ss_pred CCceEEEEEEE
Q 021166 14 GSSFGIIVSWK 24 (316)
Q Consensus 14 g~nFGVVT~~~ 24 (316)
-.+|||||+||
T Consensus 67 ~~~fgvItsFT 77 (109)
T PF04753_consen 67 DKYFGVITSFT 77 (109)
T ss_pred ccceeeEEeee
Confidence 57899999887
No 31
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=50.97 E-value=29 Score=32.38 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=39.0
Q ss_pred CCccchhhhhCCCCCceEEEEEEEEEeeecCCeEEEEEEecccchhHHHHHHHHHHH
Q 021166 1 MGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYI 57 (316)
Q Consensus 1 ~n~DLFWAlRGgGg~nFGVVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~vl~~~~~~ 57 (316)
.|+|||.|+--. .|+.|..+..++|..|..+.+ . ++|-.-....+.-+.+.+.
T Consensus 200 e~sdLfyaiPWS-qGTlgfLVaatiriIkvK~Yv-k--ltyip~~~l~e~c~k~~e~ 252 (543)
T KOG1262|consen 200 EHSDLFYAIPWS-QGTLGFLVAATIRIIKVKKYV-K--LTYIPVHGLDEYCKKITEL 252 (543)
T ss_pred ccCceEEEcccc-cCchheeeeeEEEEEeccceE-E--EEEEecccHHHHHHHHHhh
Confidence 379999999999 899999999999999998743 2 3443222345555555553
No 32
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=50.41 E-value=27 Score=33.26 Aligned_cols=22 Identities=27% Similarity=0.677 Sum_probs=20.1
Q ss_pred ccHHHHHHhhhhcCCCCCCCCC
Q 021166 282 NNFYRLVQVKTMVDPEDFFRNE 303 (316)
Q Consensus 282 ~n~~rL~~iK~kyDP~~vF~~~ 303 (316)
.|+++..++|+++||.++|...
T Consensus 485 ~n~~~flkvr~~lDP~~lFsse 506 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFSSE 506 (518)
T ss_pred cChHHHHHHHHhcCccchhhhh
Confidence 7999999999999999999654
No 33
>PF03941 INCENP_ARK-bind: Inner centromere protein, ARK binding region; InterPro: IPR005635 This region of the inner centromere protein has been found to be necessary and sufficient for binding to aurora-related kinase. This interaction has been implicated in the coordination of chromosome segregation with cell division in yeast [].; PDB: 2BFX_C 2BFY_C 3ZTX_D 2VGO_D 2VGP_D 2VRX_D 4AF3_D.
Probab=49.27 E-value=6.4 Score=25.92 Aligned_cols=34 Identities=29% Similarity=0.736 Sum_probs=23.0
Q ss_pred hchhhHhhhhccHHHHHHhhhhcCCCCCCCCCCCCCCCCC
Q 021166 272 ASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPFNL 311 (316)
Q Consensus 272 ~~~~~~~y~g~n~~rL~~iK~kyDP~~vF~~~~~i~~~~~ 311 (316)
.+.|.+ +.++.+...-.+.+||+.+|.. |++.+|
T Consensus 18 iP~WA~---~~~L~~~L~~Q~~~Dpd~IFG~---~~~~~L 51 (57)
T PF03941_consen 18 IPSWAQ---SPNLRQALKKQQNIDPDEIFGP---IPPLNL 51 (57)
T ss_dssp --GGGS---HHHHHHHHHHHHHS-HHHHCTT---SB---C
T ss_pred CCCCcC---cHHHHHHHHHHhccCHHHHcCC---CCCCCH
Confidence 347876 6889888888899999999975 455554
No 34
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=37.52 E-value=20 Score=35.16 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=16.8
Q ss_pred HHHHHhhhhcCCCCCCCCC
Q 021166 285 YRLVQVKTMVDPEDFFRNE 303 (316)
Q Consensus 285 ~rL~~iK~kyDP~~vF~~~ 303 (316)
++..+|++++||+++|.+.
T Consensus 516 d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 516 DASNKARKALDPNKILSNN 534 (541)
T ss_pred HHHHHHHHHhCCCCccccH
Confidence 6679999999999999865
No 35
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=34.86 E-value=21 Score=35.38 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=22.1
Q ss_pred hhhHhhhhccHHHHHHhhhhcCCCCCCCCC
Q 021166 274 VWGKKYFKNNFYRLVQVKTMVDPEDFFRNE 303 (316)
Q Consensus 274 ~~~~~y~g~n~~rL~~iK~kyDP~~vF~~~ 303 (316)
.+.+.| . +++.+++++++||+++|.+.
T Consensus 538 ~L~~~Y-P--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 538 RLRKRF-P--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHhhC-C--HHHHHHHHHHhCCCCccCCH
Confidence 454444 4 99999999999999999865
No 36
>PF04334 DUF478: Protein of unknown function (DUF478); InterPro: IPR007429 This family contains uncharacterised protein encoded on Trypanosomal kinetoplast minicircles.
Probab=33.52 E-value=40 Score=21.92 Aligned_cols=20 Identities=40% Similarity=0.923 Sum_probs=15.5
Q ss_pred CCccchhhh---hCCCCCceEEEE
Q 021166 1 MGEDLFWAI---RGSGGSSFGIIV 21 (316)
Q Consensus 1 ~n~DLFWAl---RGgGg~nFGVVT 21 (316)
.||-|||++ ||. .-..||+.
T Consensus 9 tnpvlfwgifevrgt-skgvgvil 31 (68)
T PF04334_consen 9 TNPVLFWGIFEVRGT-SKGVGVIL 31 (68)
T ss_pred cCceEEEEEEEEeec-ccceEEEE
Confidence 389999985 888 67777764
No 37
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=33.30 E-value=30 Score=25.46 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=10.7
Q ss_pred HHhhhhcCCCCCCC
Q 021166 288 VQVKTMVDPEDFFR 301 (316)
Q Consensus 288 ~~iK~kyDP~~vF~ 301 (316)
.+|.+||||++-+.
T Consensus 79 ~~l~~KyDp~~~y~ 92 (95)
T PF03392_consen 79 EELVKKYDPEGKYR 92 (95)
T ss_dssp HHHHHHHTTT-TTH
T ss_pred HHHHHHHCCCcchh
Confidence 57899999998763
No 38
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=32.73 E-value=27 Score=19.41 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=10.4
Q ss_pred hccHHHHHHhhhh
Q 021166 281 KNNFYRLVQVKTM 293 (316)
Q Consensus 281 g~n~~rL~~iK~k 293 (316)
.+=|.||++||.-
T Consensus 10 ~eFY~rlk~Ike~ 22 (28)
T PF12108_consen 10 SEFYERLKEIKEY 22 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4568999999974
No 39
>PF14658 EF-hand_9: EF-hand domain
Probab=26.02 E-value=49 Score=22.58 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=13.3
Q ss_pred HHHHHhhhhcCCCCC
Q 021166 285 YRLVQVKTMVDPEDF 299 (316)
Q Consensus 285 ~rL~~iK~kyDP~~v 299 (316)
.+|+.+.+.+||++-
T Consensus 35 ~~Lq~l~~elDP~g~ 49 (66)
T PF14658_consen 35 SELQDLINELDPEGR 49 (66)
T ss_pred HHHHHHHHHhCCCCC
Confidence 389999999999985
No 40
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=23.21 E-value=2.2e+02 Score=26.73 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.7
Q ss_pred CCCCCceEEEEEEEEEeeecCCeEE
Q 021166 11 GSGGSSFGIIVSWKIKLVAVPPTVT 35 (316)
Q Consensus 11 GgGg~nFGVVT~~~~k~~p~~~~~~ 35 (316)
|+ -|+.||||.+.+-+-|.|+.+.
T Consensus 247 GS-EGtlGVvT~vSil~~~kpksvn 270 (511)
T KOG1232|consen 247 GS-EGTLGVVTKVSILAPPKPKSVN 270 (511)
T ss_pred cC-CceeeEEeeEEEeecCCCccee
Confidence 66 6899999999999999998553
No 41
>PF09875 DUF2102: Uncharacterized protein conserved in archaea (DUF2102); InterPro: IPR012025 The exact functionof this protein unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=21.80 E-value=74 Score=23.70 Aligned_cols=29 Identities=17% Similarity=0.493 Sum_probs=23.9
Q ss_pred ccHHHHHHhhhhcCCCCCCCCCCCCCCCC
Q 021166 282 NNFYRLVQVKTMVDPEDFFRNEQSIPPFN 310 (316)
Q Consensus 282 ~n~~rL~~iK~kyDP~~vF~~~~~i~~~~ 310 (316)
+...++.+--++.||+++|....+-||-+
T Consensus 42 e~V~~~i~~iR~ld~~~IF~KdRGFppgD 70 (104)
T PF09875_consen 42 EEVDKVIEEIRKLDPNHIFVKDRGFPPGD 70 (104)
T ss_pred HHHHHHHHHHHhhCCCceEeecCCCCCCc
Confidence 45788888889999999999887777743
No 42
>PF09129 Chol_subst-bind: Cholesterol oxidase, substrate-binding; InterPro: IPR015213 The substrate-binding domain found in cholesterol oxidase is composed of an eight-stranded mixed beta-pleated sheet and six alpha-helices. This domain is positioned over the isoalloxazine ring system of the FAD cofactor bound by the FAD-binding domain (IPR006094 from INTERPRO) and forms the roof of the active site cavity, allowing for catalysis of oxidation and isomerisation of cholesterol to cholest-4-en-3-one []. ; PDB: 3JS8_A 1I19_B 2I0K_A.
Probab=21.63 E-value=47 Score=29.56 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=15.1
Q ss_pred hccHHHHHHhhhhcCCCCCCCCC
Q 021166 281 KNNFYRLVQVKTMVDPEDFFRNE 303 (316)
Q Consensus 281 g~n~~rL~~iK~kyDP~~vF~~~ 303 (316)
++|++.=++.-.+|||++||.++
T Consensus 292 ~~~Wd~A~atL~~~DPhriFss~ 314 (321)
T PF09129_consen 292 DDNWDTARATLNRYDPHRIFSSP 314 (321)
T ss_dssp CCSHHHHHHHHHHH-TT--S--H
T ss_pred CCCHHHHHHHHhccCccchhccH
Confidence 36788888999999999999875
Done!