BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021167
(316 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14717|TRDMT_HUMAN tRNA (cytosine(38)-C(5))-methyltransferase OS=Homo sapiens
GN=TRDMT1 PE=1 SV=1
Length = 391
Score = 185 bits (469), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 182/327 (55%), Gaps = 32/327 (9%)
Query: 8 LLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKM 67
L+SPPCQP+TR G Q +D+R SFL IL+++P K P + +ENV GFE S T +
Sbjct: 74 LMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLL 133
Query: 68 IEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAK--RKPLSFRC---QLLNNQLLRS-- 120
I+ + N + QEF+LSP G+P SR RYF +AK +PL F+ L+ + S
Sbjct: 134 IQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQVLMEFPKIESVH 193
Query: 121 PSPLLGNDDMTVITKHDQPDDSWDKLLESC--DPVERFLEFSNSGDQVNTETGFLSTGTA 178
P + + + K+ +P+ S+D ++ D + LE + + N + LS
Sbjct: 194 PQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHRKNQQDSDLS--VK 251
Query: 179 AVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKG 238
+ DF ++ ++ +L+P + R+ +DIV P +R CFTK Y Y++G
Sbjct: 252 MLKDF--------LEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEG 303
Query: 239 TGSLLAT---VQPKNKGKA---SSLKEQ-------HLRYFTPREVANLHSFPGDFQFPHH 285
TGS+L T VQ +N K+ S +EQ LRYFTP+E+ANL FP +F FP
Sbjct: 304 TGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEK 363
Query: 286 LSLRQRYALLGNSLSIAVVAPLLQYLF 312
++++QRY LLGNSL++ VVA L++ L+
Sbjct: 364 ITVKQRYRLLGNSLNVHVVAKLIKILY 390
>sp|Q7YS61|TRDMT_BOVIN tRNA (cytosine-5-)-methyltransferase OS=Bos taurus GN=TRDMT1 PE=2
SV=1
Length = 391
Score = 184 bits (467), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 175/340 (51%), Gaps = 54/340 (15%)
Query: 5 HAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTH 64
+ L+SPPCQP+TR GLQ +D R SFL IL+++P K P + +ENV GFE S T
Sbjct: 71 NMILMSPPCQPFTRIGLQGDVTDPRTNSFLHILDILPRLQKLPKYILLENVKGFEMSSTR 130
Query: 65 AKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPL 124
+I+ + N + QEF+LSP G+P SR RYF +AK +P F Q L+ P
Sbjct: 131 DLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQPEPFPFQAPGQVLMEFPK-- 188
Query: 125 LGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVDDFG 184
T+ + P E+ E +G ++ ++ +G A+
Sbjct: 189 ---------TESEHPPKYAIN-------AEKKTEEKKTGPKICFDSSTQCSGKEAI--LF 230
Query: 185 AAEETVEVDRCVSIDH--------------------FLVPLSLIERWGSAMDIVYPDSKR 224
E E+DR D FL P SL+ R+ +DIV P S+R
Sbjct: 231 KLETAGEIDRKHQQDSDLSVRMLKDFLEDDIDKHSFFLPPKSLL-RYALLLDIVKPTSRR 289
Query: 225 CCCFTKSYYRYVKGTGSLLAT---VQPKNKGKA-SSLKEQ---------HLRYFTPREVA 271
CFTK Y RY++GTGS+L T VQ +N K+ +SL ++ LR+FTP+E+A
Sbjct: 290 SMCFTKGYGRYIEGTGSVLQTTEDVQIENIYKSLTSLSQEEKIMRLSMLQLRFFTPKEIA 349
Query: 272 NLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYL 311
NL FP +F FP +++QRY LLGNSL++ VVA L++ L
Sbjct: 350 NLLGFPPEFGFPEMTTVKQRYRLLGNSLNVHVVAKLIKIL 389
>sp|Q4G073|TRDMT_RAT tRNA (cytosine(38)-C(5))-methyltransferase OS=Rattus norvegicus
GN=Trdmt1 PE=2 SV=1
Length = 391
Score = 181 bits (458), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 167/339 (49%), Gaps = 52/339 (15%)
Query: 5 HAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTH 64
+ L+SPPCQP+TR GLQ SD R SFL IL+++P K P + +ENV GFE S T
Sbjct: 71 NMILMSPPCQPFTRIGLQGDMSDRRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTR 130
Query: 65 AKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAK--RKPLSFRC--QLLN---NQL 117
+I+ + + QEF+LSP G+P SR RYF +AK +PL F+ Q+L N
Sbjct: 131 GLLIQTMEACGFQYQEFLLSPSSLGIPNSRLRYFLIAKLQSEPLCFQAPGQILMEFPNSG 190
Query: 118 LRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFL------------EFSNSGDQ 165
P ++ + + +PD D C + L +S
Sbjct: 191 TVQPQEYAVVEEGKLRVRTREPDVCLDSSSTQCSGQDSILFKHETAADIDRKRQQDSDLS 250
Query: 166 VNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRC 225
V GFL G A +L+P + R+ +DIV P S+R
Sbjct: 251 VQMLKGFLEDGDTA--------------------QYLLPAKSLLRYALLLDIVKPTSRRS 290
Query: 226 CCFTKSYYRYVKGTGSLLAT---VQPKN----------KGKASSLKEQHLRYFTPREVAN 272
CFTK Y Y++GTGS+L T VQ +N + K + L LRYFTP+E+AN
Sbjct: 291 MCFTKGYGSYIEGTGSVLQTAEDVQIENIYKSLPDLPPEEKIAKLSMLKLRYFTPKEIAN 350
Query: 273 LHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYL 311
L FP +F FP +++QRY LLGNSL++ VV+ LL L
Sbjct: 351 LLGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVSKLLTVL 389
>sp|O55055|TRDMT_MOUSE tRNA (cytosine(38)-C(5))-methyltransferase OS=Mus musculus
GN=Trdmt1 PE=2 SV=2
Length = 415
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/342 (35%), Positives = 172/342 (50%), Gaps = 58/342 (16%)
Query: 5 HAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTH 64
+ L+SPPCQP+TR GLQ +D R SFL IL+++P K P + +ENV GFE S T
Sbjct: 71 NMILMSPPCQPFTRIGLQGDMTDPRTTSFLYILDILPRLQKLPKYILLENVKGFEVSSTR 130
Query: 65 AKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPL 124
+I+ + + QEF+LSP G+P SR RYF +AK + F Q L+ P +
Sbjct: 131 GLLIQTIEACGFQYQEFLLSPSSLGIPNSRLRYFLIAKLQSEPFPFQAPGQILMEFPKIV 190
Query: 125 LGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVDDFG 184
+ + QP V+R +G ++ E+ ST ++ D
Sbjct: 191 TVEPQKYAVVEESQPR------------VQR------TGPRICAESS--STQSSGKDTIL 230
Query: 185 AAEETVE-------VDRCVSI------------DHFLVPLSLIERWGSAMDIVYPDSKRC 225
ETVE D +S+ D +L+P L+ R+ +DIV P S+R
Sbjct: 231 FKLETVEERDRKHQQDSDLSVQMLKDFLEDGDTDEYLLPPKLLLRYALLLDIVKPTSRRS 290
Query: 226 CCFTKSYYRYVKGTGSLLATVQ---------------PKNK-GKASSLKEQHLRYFTPRE 269
CFTK Y Y++GTGS+L + P+ K K S LK LRYFTP+E
Sbjct: 291 MCFTKGYGSYIEGTGSVLQAAEDAQIENIYKSLPDLPPEEKIAKLSMLK---LRYFTPKE 347
Query: 270 VANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYL 311
+ANL FP +F FP +++QRY LLGNSL++ VVA LL L
Sbjct: 348 IANLQGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVAKLLTVL 389
>sp|Q54JH6|CMT1_DICDI DNA (cytosine-5)-methyltransferase OS=Dictyostelium discoideum
GN=dnmA PE=1 SV=1
Length = 379
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 166/329 (50%), Gaps = 51/329 (15%)
Query: 2 YGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFE-- 59
+ A+AWL+SPPCQP+TR GLQK D R SF +L+++ PP + +ENV GF
Sbjct: 67 FKANAWLMSPPCQPFTRLGLQKDDQDNRTNSFFHLLDVLTKIKDPPTYILIENVFGFAKK 126
Query: 60 -TSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRK-PLSFRC-QLLNNQ 116
+S+T +++ L +Y QEF LSP QFG+ R RYFC+AKR L+F+ Q +N+
Sbjct: 127 GSSNTRDHLLDTLIKMNYSFQEFHLSPQQFGLANQRLRYFCIAKRNGKLNFKKEQDKHNE 186
Query: 117 LLRSPSPLLGNDDMTVITKHDQ-------PDDSWDKLLESCDPVERFLEFSNSGDQVNTE 169
+ +++ K+D P + LE CD + + + + D++
Sbjct: 187 KVDENKLNNNSNNNNEQNKYDNLKILDHIPGYDFHTTLEECDEISNYFDKDLTDDEL--- 243
Query: 170 TGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFT 229
+ + VP +L+ G DI DSK C T
Sbjct: 244 ----------------------------YEKYKVPHNLLLSKGMLFDIKQKDSKTSNCVT 275
Query: 230 KSYYRYVKGTGSLLATVQPKNKGKA-----SSLKEQHLRYFTPREVANLHSFPGDFQFPH 284
KSY ++++GTGS+ +Q N KA SL LRYF+P+E+ LH FP +F+F
Sbjct: 276 KSYGKFIEGTGSI---IQMDNNFKADINDNKSLIPLKLRYFSPKEITRLHGFPEEFKFSP 332
Query: 285 HLSLRQRYALLGNSLSIAVVAPLLQYLFA 313
L+ Q Y L+GNSL++ +V+ LL+ L +
Sbjct: 333 KLTTIQCYRLIGNSLNVKIVSELLKVLVS 361
>sp|P40999|PMT1M_SCHPO tRNA (cytosine(38)-C(5))-methyltransferase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pmt1 PE=1 SV=1
Length = 330
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 145/309 (46%), Gaps = 61/309 (19%)
Query: 7 WLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAK 66
W +SP CQP+TR G +K D R+ +FL IL ++PH P + +ENV GFE S +
Sbjct: 75 WTMSPSCQPFTRIGNRKDILDPRSQAFLNILNVLPHVNNLPEYILIENVQGFEESKAAEE 134
Query: 67 MIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLG 126
++L N Y E ILSP QF +P SR R++ LA+ L+F+ +
Sbjct: 135 CRKVLRNCGYNLIEGILSPNQFNIPNSRSRWYGLAR---LNFKGE--------------- 176
Query: 127 NDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVDDFGAA 186
W S D V +F E + +V +L
Sbjct: 177 ----------------W-----SIDDVFQFSEVAQKEGEVKRIRDYL------------- 202
Query: 187 EETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATV 246
E++R S ++V S++ +WG DIV PDS CCCFT+ Y V+G GS+L
Sbjct: 203 ----EIERDWS--SYMVLESVLNKWGHQFDIVKPDSSSCCCFTRGYTHLVQGAGSILQMS 256
Query: 247 QPKNKGKASSLKEQ--HLRYFTPREVANLHSFPGDFQFPH-HLSLRQRYALLGNSLSIAV 303
+N + LRYFT REVA L FP ++ +++ + Y LLGNS+++ V
Sbjct: 257 DHENTHEQFERNRMALQLRYFTAREVARLMGFPESLEWSKSNVTEKCMYRLLGNSINVKV 316
Query: 304 VAPLLQYLF 312
V+ L+ L
Sbjct: 317 VSYLISLLL 325
>sp|P25263|MTC1_HERAU Modification methylase HgiCI OS=Herpetosiphon aurantiacus GN=hgiCIM
PE=3 SV=2
Length = 420
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 133/346 (38%), Gaps = 47/346 (13%)
Query: 12 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEIL 71
PCQP++ G QK D R F +I E I +P L +ENV G T D IL
Sbjct: 74 PCQPFSYAGKQKGFGDTRGTLFFEI-ERILKAYRPKGFL-LENVRGLTTHDKGRTFKTIL 131
Query: 72 ANSDYLTQE--FILSPLQFGVPYSRPRYFC--LAKRKPL-----------SFRCQLLNNQ 116
L IL+ F VP +R R + L + +P S + + L+NQ
Sbjct: 132 QKLHELNYGVYLILNSSNFQVPQNRLRVYIVGLDQSQPELTITSHIGATDSHKFKQLSNQ 191
Query: 117 --LLRSPSPLLGNDDMTV--ITKHDQPDDSWDKLLESCD-PVE----RFLEFSNSGDQVN 167
L + +L D + + K++ D +KLL P++ R +++ N +
Sbjct: 192 ASLFDTNKIMLVRDILEDHPLDKYNCSTDFVNKLLAFIGHPIKLNGKRLIDYRNGNSIHS 251
Query: 168 TETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCC 227
E G T+ F A + L+ IE+ + + DS
Sbjct: 252 WELGIKGECTSDEIQFMNALIANRRKKHFGAHQDGKKLT-IEQIKTFFEHDDLDSIMQSL 310
Query: 228 FTKSYYRYVKGT------------------GSLLATVQPKNKGKASSLKEQHLRYFTPRE 269
TK Y + V G S+ T+ + K + + +R TPRE
Sbjct: 311 ITKGYLQEVNGRFNPVAGNMSFEVFKFLDPDSVSITLVSSDAHKIGVVHQNRIRRITPRE 370
Query: 270 VANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFAQA 315
A L FP FQF SL Y GNS+S+ VV ++ LF A
Sbjct: 371 CARLQGFPDSFQFHPKDSL--AYRQFGNSVSVPVVKAVILDLFKSA 414
>sp|P05102|MTH1_HAEPH Modification methylase HhaI OS=Haemophilus parahaemolyticus
GN=hhaIM PE=1 SV=1
Length = 327
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 111/309 (35%), Gaps = 73/309 (23%)
Query: 12 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEIL 71
PCQ ++ G QK D+R F I ++ K P ++F+ENV F + D + +E++
Sbjct: 80 PCQAFSISGKQKGFEDSRGTLFFDIARIVRE--KKPKVVFMENVKNFASHD-NGNTLEVV 136
Query: 72 ANS----DYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGN 127
N+ DY +L+ L +G+P R R + + R LN Q + P P N
Sbjct: 137 KNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRND-------LNIQNFQFPKPFELN 189
Query: 128 DDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVDDFGAAE 187
T + PD + L+ ++R D V T T
Sbjct: 190 ---TFVKDLLLPDSEVEHLV-----IDR-------KDLVMTNQEIEQTTPKT-------- 226
Query: 188 ETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQ 247
V L ++ + G I S R T S Y G G T
Sbjct: 227 ---------------VRLGIVGKGGQGERIY---STRGIAITLSAY----GGGIFAKT-- 262
Query: 248 PKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPL 307
L R PRE A + +P ++ H S Q Y GNS VV +
Sbjct: 263 ------GGYLVNGKTRKLHPRECARVMGYPDSYKV--HPSTSQAYKQFGNS----VVINV 310
Query: 308 LQYLFAQAG 316
LQY+ G
Sbjct: 311 LQYIAYNIG 319
>sp|P34879|MTS2_SHISO Modification methylase SsoII OS=Shigella sonnei GN=ssoIIM PE=3 SV=1
Length = 379
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 12 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENV---VGFETSDTHAKMI 68
PC +++ GL+K +D R F I +I K PH +ENV +G + T + +
Sbjct: 141 PCVAFSQAGLKKGFNDTRGTLFFDIARIIKE--KKPHAFLLENVKNLLGHDKGRTFSIIK 198
Query: 69 EILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPL 124
L +Y I + FGVP +R R + + K ++ N++ P+PL
Sbjct: 199 NTLEELNYTVYYNIFAAKDFGVPQNRERIYIVGFNKE-----KVRNHEHFTFPTPL 249
Score = 38.5 bits (88), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 258 KEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 313
K + R TPRE + L FP DF P +S Q Y GNS+++ V+ + + + +
Sbjct: 322 KGSNPRKITPREASRLQGFPSDFIIP--VSDTQAYKQFGNSVAVPVINAIAEKIIS 375
>sp|P24581|MTNX_NEILA Cytosine-specific methyltransferase NlaX OS=Neisseria lactamica
GN=nlaXM PE=3 SV=1
Length = 313
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 12 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEIL 71
PCQP+++ GL+K +D R F I ++ K P +ENV + D + IL
Sbjct: 73 PCQPFSQAGLKKGFADTRGTLFFDIERIL--LAKKPQAFLLENVKQLKGHDKGRTLQVIL 130
Query: 72 AN---SDYLTQEFILSPLQFGVPYSRPRYFCLA 101
A+ + Y +L FG+P +R R + +
Sbjct: 131 AHLQQAGYKVYTEVLKARDFGIPQNRERIYLVG 163
Score = 34.7 bits (78), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 263 RYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 313
R TP E A L FP FQ P +S Q Y GNS+ + V+ + + + A
Sbjct: 255 RKITPPEAARLQGFPDSFQIP--VSDAQAYRQFGNSVCVPVIRAIAEQMKA 303
>sp|P29567|MTHT_METTF Modification methylase MthTI OS=Methanobacterium thermoformicicum
GN=mthTIM PE=3 SV=1
Length = 330
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 6 AWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHA 65
++ PPCQ ++ G + D R +F ++L+ K P ENV G S TH
Sbjct: 66 GFIGGPPCQSWSLAGSMCGADDPRGKTFYAYVDLVKE--KDPLFFLAENVPGI-VSRTHL 122
Query: 66 KMIEILANS----DYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQL 112
+ L NS Y + +L+ +GVP R R F + R+ L+ + +
Sbjct: 123 PEFKRLVNSFIDIGYNVEYKVLNAKDYGVPQDRKRVFIVGYREDLNLKFEF 173
>sp|P34877|MTSA_LACLC Modification methylase ScrFIA OS=Lactococcus lactis subsp. cremoris
GN=scrFIAM PE=3 SV=1
Length = 389
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 18/143 (12%)
Query: 12 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSD---THAKMI 68
PCQ +++ G + D R F +I +I K P +ENV +T D T ++
Sbjct: 148 PCQAFSQAGKKLGFDDTRGTLFFEIARIIKE--KRPKAFLLENVKNLKTHDKGRTFKTIL 205
Query: 69 EILANSDYLTQEFILSPLQFGVPYSRPRYFCLA-KRKPLSFRCQLLNNQLLRSPSPL--- 124
L DY + FG+P +R R + + RK +S N + P+PL
Sbjct: 206 NTLEELDYEVHTALFKARDFGLPQNRERIYIVGFDRKSIS------NYSDFQMPTPLQEK 259
Query: 125 --LGNDDMTVI-TKHDQPDDSWD 144
+GN +V+ K+ D WD
Sbjct: 260 TRVGNILESVVDDKYTISDKLWD 282
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 258 KEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSI----AVVAPLLQYL 311
K ++ R TPRE A L FP +F P +S Q Y GNS+++ A+ +L+ L
Sbjct: 329 KNKNPRKITPREAARLQGFPENFIIP--VSDTQAYKEFGNSVAVPTIHAIAEKMLEVL 384
>sp|P11408|MTM1_MORSP Modification methylase MspI OS=Moraxella sp. GN=mspIM PE=3 SV=1
Length = 418
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 12 PCQPYT----RQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSD---TH 64
PCQP++ R+G + + ++I+E T K P +LF+ENV G D T
Sbjct: 173 PCQPFSHIGKREGFEHPTQGTMFHEIVRIIE----TKKTP-VLFLENVPGLINHDDGNTL 227
Query: 65 AKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLA 101
+IE L + Y +L FG+P R R++ +A
Sbjct: 228 KVIIETLEDMGYKVHHTVLDASHFGIPQKRKRFYLVA 264
>sp|Q8EL95|MT36_OCEIH Putative modification methylase OB3336 OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=OB3336 PE=3 SV=1
Length = 460
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 10 SPPCQPYTRQGLQK---------QSSDARAFSFLKILELIPHTVKPPHMLFVENV---VG 57
PPCQ Y++ G K Q +DAR + L+ H +++ +ENV V
Sbjct: 94 GPPCQAYSKIGRAKLKSLGEERRQENDARGKLYENFLDYALHV--DANVIVMENVPEAVN 151
Query: 58 FETSDTHAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLS 107
+ + + +IL N Y +L+ FGVP +R R F +A +K +
Sbjct: 152 YGGVNIPDTVCDILINKGYDAIWTVLNAADFGVPQTRVRLFVMAIKKDIG 201
>sp|P19888|MTBA_BACAR Modification methylase BanI OS=Bacillus aneurinolyticus GN=banIM
PE=1 SV=1
Length = 428
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 12 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSD---THAKMI 68
PCQP++ G Q+ D R F ++ ++ P +ENV G T D T +I
Sbjct: 75 PCQPFSYAGKQQGFGDTRGTLFFEVERVLRDN--RPKAFLLENVRGLVTHDKGRTLKTII 132
Query: 69 EILANSDYLTQEFILSPLQFGVPYSRPRYFCLA 101
L Y +L+ FGVP +R R + L
Sbjct: 133 SKLEELGYGVSYLLLNSSTFGVPQNRVRIYILG 165
Score = 38.9 bits (89), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 263 RYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLF 312
R TPRE A L FP DF H + Y LGNS+++ VV +++ LF
Sbjct: 364 RRITPRECARLQGFPDDFIL--HSNDNFAYKQLGNSVTVKVVEKVIEDLF 411
>sp|O34939|YDIO_BACSU Probable BsuMI modification methylase subunit YdiO OS=Bacillus
subtilis (strain 168) GN=ydiO PE=2 SV=1
Length = 427
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Query: 8 LLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGF--ETSDTHA 65
L PPCQ ++ + D R +++ +I + P + VENV G + S +
Sbjct: 171 LAGPPCQGHSDLNNHTRRKDPRNALLMRVSRVI--ELFQPSSVLVENVPGIIHDKSGSFK 228
Query: 66 KMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQL 112
+ L Y E +L+ + GV +R RYF A + P+S Q+
Sbjct: 229 EFKNHLKTQGYYFDEIVLNAEKLGVSQARRRYFIFASKTPVSSLNQI 275
>sp|Q59603|MTB1_NEIGO Modification methylase NgoBI OS=Neisseria gonorrhoeae GN=ngoBIM
PE=3 SV=2
Length = 317
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 12 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSD---THAKMI 68
PCQP++ G D R F I E++ K P +ENV T D T ++
Sbjct: 70 PCQPFSIAGKGLGFEDTRGTLFFNIAEIL--KTKQPKAFLLENVKRLTTHDSGRTFRIVL 127
Query: 69 EILANSDYLTQEFILSPLQFGVPYSRPRYFCLA 101
E L Y +L+ L FG+P R R + +
Sbjct: 128 ETLKQLGYTVYFKVLNTLDFGLPQKRERIYIVG 160
>sp|P05302|MTD1_DESNO Modification methylase DdeI OS=Desulfomicrobium norvegicum (strain
DSM 1741 / NCIMB 8310) GN=ddeIM PE=3 SV=1
Length = 415
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 11 PPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAK---- 66
PPCQ ++ G + Q D R F+ + + P +ENV+G + T ++
Sbjct: 74 PPCQGFSLSGNRDQK-DPRNSLFVDFVRFVKFF--SPKFFVMENVLGILSMKTKSRQYVK 130
Query: 67 --MIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPL 124
+ E +N Y IL+ +GVP SR R F + + + LN Q+L PS +
Sbjct: 131 DIIAEEFSNVGYKVCVIILNACDYGVPQSRQRVFFIGLKSD-----RPLNQQILTPPSKV 185
Query: 125 L 125
+
Sbjct: 186 I 186
>sp|P94147|MTA1_RUEGE Modification methylase AgeI OS=Ruegeria gelatinovora GN=ageIM PE=3
SV=1
Length = 429
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 16/133 (12%)
Query: 10 SPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIE 69
PPCQ ++ G Q++ DAR ++ + P +ENVVG + A + +
Sbjct: 77 GPPCQGFSTYG-QRRDDDARNQLYVPYFGFVEEFR--PKAFLIENVVGLLSMSGGAVLAD 133
Query: 70 ILANSD---YLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLG 126
++A ++ Y L ++GVP R R F + Q + P P
Sbjct: 134 MVARAEALGYAADVVTLDACEYGVPQHRRRVFIFGA----------ADGQRIDPPQPSHV 183
Query: 127 NDDMTVITKHDQP 139
N + + +DQP
Sbjct: 184 NGKRSGVVLNDQP 196
>sp|P43420|MTB6_BACSF Modification methylase Bsp6I OS=Bacillus sp. (strain RFL6)
GN=bsp6IM PE=3 SV=1
Length = 315
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 15/145 (10%)
Query: 12 PCQPYTRQGLQKQSSDARAFS-FLKILELIPHTVKPPHMLFVENV---VGFETSDTHAKM 67
PC ++ G +K D ++ F + L LI K P ++F+ENV VG + +T +
Sbjct: 72 PCTSFSVAGYRKGFEDEKSGDLFFETLRLI--VAKKPQVIFLENVKNLVGHDNGNTFKVI 129
Query: 68 IEILANSDYLTQEFILSPLQFG-VPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPL-L 125
E L ++ Y + +L+ FG +P +R R + + R ++ N P PL L
Sbjct: 130 YEALESNGYHIKYQVLNAKDFGNIPQNRERIYIVGFRNIEHYK-----NFNFPMPQPLTL 184
Query: 126 GNDDMTVITKHDQPDDSWDKLLESC 150
DM I D+ DD + + C
Sbjct: 185 TIKDM--INLSDKLDDRFYYTEDKC 207
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 234 RYVKGTGSLLATVQPKNKGKASS----LKEQH-LRYFTPREVANLHSFPGDFQFPHHLSL 288
+YV+ S + N G +K +H +R TPRE N +P DF P L+
Sbjct: 229 KYVRENKSNVCPTLTANMGTGGHNVPLVKTKHGIRKLTPRECFNFQGYPEDFILP-ELAP 287
Query: 289 RQRYALLGNSLSIAVVAPLLQYLF 312
Y GNS+ + V+ + + ++
Sbjct: 288 THLYKQAGNSVVVPVIRRIAENIY 311
>sp|P34906|MTF1_FUSNU Modification methylase FnuDI OS=Fusobacterium nucleatum GN=fnuDIM
PE=3 SV=1
Length = 344
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 117/311 (37%), Gaps = 63/311 (20%)
Query: 10 SPPCQPYTRQGLQKQSSDARA---FSFLKILELIPHTVKPPHMLFVENVVGF---ETSDT 63
PPCQ ++ G + +D R + +++IL+ I P ENV G ++
Sbjct: 68 GPPCQSWSEAGSLRGINDPRGKLFYEYIRILKDI-----QPKFFLAENVKGMLSKRNTEA 122
Query: 64 HAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSP 123
+I+ + Y +L+ +GV R R F + RK LN P P
Sbjct: 123 VKDIIKEFEEAGYNVFIKLLNAFDYGVAQDRERVFYVGFRKD-------LNISNFEFPYP 175
Query: 124 LLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVDDF 183
+ + + D WD L ++ P + + + D E TG+ +
Sbjct: 176 ISEKERKYL------KDSIWD-LKDNALPGKD--KNKTNADDCIVENHEYLTGSYS---- 222
Query: 184 GAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLL 243
T+ + R + + P ++ G + +P + K+ Y++V G
Sbjct: 223 -----TIFMSRN-RVRQWEQPAFTVQASGRQCQL-HPQAPTMIKIDKNMYKFVAG----- 270
Query: 244 ATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAV 303
KE R + RE A + FP F+F ++ SL Y ++GN++ +
Sbjct: 271 --------------KENLYRRLSIRECARIQGFPDTFKF-YYTSLEDGYKMVGNAVPVD- 314
Query: 304 VAPLLQYLFAQ 314
L Y+ A+
Sbjct: 315 ----LAYIIAK 321
>sp|P00476|MTBS_BPSPR Modification methylase SPRI OS=Bacillus phage SPR PE=3 SV=1
Length = 439
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 12 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGF---ETSDTHAKMI 68
PCQ ++ G +K D R F + +E + K P ENV G + +T M
Sbjct: 77 PCQSFSVAGHRKGFEDTRGTLFFQYVETLKE--KQPKFFVFENVKGLINHDKGNTLNVMA 134
Query: 69 EILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPL 106
E + Y +L+ F VP +R R + + R+ L
Sbjct: 135 EAFSEVGYRIDLELLNSKFFNVPQNRERLYIIGIREDL 172
>sp|P20589|MTH3_HAEAE Modification methylase HaeIII OS=Haemophilus aegyptius GN=haeIIIM
PE=1 SV=1
Length = 330
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Query: 10 SPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAK--- 66
PPCQ ++ G + D R F + + ++ K P ENV G + H K
Sbjct: 68 GPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQ--KKPIFFLAENVKGM-MAQRHNKAVQ 124
Query: 67 -MIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSF 108
I+ N+ Y +L+ +GV R R F + RK L+
Sbjct: 125 EFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNI 167
Score = 38.1 bits (87), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 249 KNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSI 301
KN K KE R T RE A + FP DF F H+ SL Y ++GN++ +
Sbjct: 259 KNLNKFVEGKEHLYRRLTVRECARVQGFPDDFIF-HYESLNDGYKMIGNAVPV 310
>sp|P50188|MTN1_NOCAE Modification methylase NaeI OS=Lechevalieria aerocolonigenes
GN=naeIM PE=3 SV=1
Length = 413
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 12 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFET---SDTHAKMI 68
PC P++ G Q + D R F +EL V P L +ENV G + ++
Sbjct: 77 PCPPFSIAGKQLGADDMRDL-FAWAVELC--DVMKPRALMLENVRGLSMPRFAGYRQHVL 133
Query: 69 EILANSDYLTQEFILSPLQFGVPYSRPRYFCLA 101
+ L + Y+ + +L FGVP RPR+ +A
Sbjct: 134 DRLNDMGYVAEWRLLHASDFGVPQLRPRFVLVA 166
>sp|P15446|MTH2_HAEPA Modification methylase HpaII OS=Haemophilus parainfluenzae
GN=hpaIIM PE=1 SV=1
Length = 358
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 12 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEIL 71
PCQ ++ G + D R F + E+I P F+ENV G + D + IL
Sbjct: 102 PCQAFSIAGKRGGFEDTRGTLFFDVAEIIRR--HQPKAFFLENVKGLKNHDKGRTLKTIL 159
Query: 72 ----ANSDYLTQE-FILSPLQFGVPYSRPRYFCLAKRK 104
+ Y E I++ FGVP +R R + + K
Sbjct: 160 NVLREDLGYFVPEPAIVNAKNFGVPQNRERIYIVGFHK 197
>sp|P08455|MTP2_NEIGO Modification methylase NgoPII OS=Neisseria gonorrhoeae GN=ngoPIIM
PE=3 SV=2
Length = 330
Score = 39.7 bits (91), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 11/106 (10%)
Query: 10 SPPCQPYTRQGLQKQSSDARA---FSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAK 66
PPCQ ++ G + DAR F +++IL+ K P ENV G + +
Sbjct: 70 GPPCQSWSEAGALRGIDDARGQLFFDYIRILK-----SKQPKFFLAENVSGMLANRHNGA 124
Query: 67 MIEILANSDYLTQEFILS---PLQFGVPYSRPRYFCLAKRKPLSFR 109
+ +L D + L+ +GV R R F + RK L +
Sbjct: 125 VQNLLKMFDGCGYDVTLTMANAKDYGVAQERKRVFYIGFRKDLEIK 170
>sp|O30868|MTH2_HAEAE Modification methylase HaeII OS=Haemophilus aegyptius GN=haeIIM
PE=3 SV=1
Length = 318
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
Query: 5 HAWLLSP-PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSD- 62
H LL+ PCQP++ G +D R F I ++ K P +ENV T D
Sbjct: 64 HDILLAGFPCQPFSIAGKGLGFADTRGTLFFNIEAIL--KAKKPKAFLLENVKRLTTHDN 121
Query: 63 --THAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFR 109
T + + L Y +L+ L FG+P R R + + L F
Sbjct: 122 GNTFKVINDKLNKLGYTVYHKVLNTLDFGLPQKRERIYIVGFLDKLHFE 170
>sp|P34878|MTSB_LACLC Modification methylase ScrFIB OS=Lactococcus lactis subsp. cremoris
GN=scrFIBM PE=3 SV=1
Length = 360
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 10 SPPCQPYTRQGLQK---QSSDARAFSFLKILELIPHTVKPPHMLF--VENVVGFETSDTH 64
S PCQ + G Q S R+ + ++I H KP +++ V+N+VG
Sbjct: 124 SFPCQDISVAGYQNGLVADSGTRSSLLWECCKIIEHK-KPKYLMMENVKNLVGKNHKVNF 182
Query: 65 AKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKP 105
K + L + Y IL+ FG+P +R R FC++ P
Sbjct: 183 NKFLLYLESLGYTNYWDILNARDFGIPQNRERVFCISILNP 223
>sp|P09915|MTBR_BPRH1 Modification methylase Rho11sI OS=Bacillus phage rho11s PE=3 SV=2
Length = 503
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 12 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGF---ETSDTHAKMI 68
PCQ ++ G +K D R F + ++ + K P ENV G + +T M
Sbjct: 77 PCQSFSVAGYRKGFEDTRGTLFFQYIDTLKE--KQPRYFVFENVKGLINHDKGNTLNIMA 134
Query: 69 EILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPL 106
E + Y +L+ F VP +R R + + R+ L
Sbjct: 135 ESFSEVGYRIDLELLNSKFFNVPQNRERIYIIGVREDL 172
>sp|P17044|MTBF_BACIU Modification methylase BsuFI OS=Bacillus subtilis GN=hsdFM PE=3
SV=1
Length = 409
Score = 38.9 bits (89), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 12 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEIL 71
PCQP++ G ++ + R +L ++ K P M +ENV G T+D IL
Sbjct: 169 PCQPFSNIGKREGFAHERRNIIFDVLRILKK--KQPKMFLLENVKGLLTNDNGNTFRVIL 226
Query: 72 ANSDYLTQEF---ILSPLQFGVPYSRPRYFCLA 101
N L ++ FG+P R R +
Sbjct: 227 DNLKSLGYSVFYEVMDAQNFGLPQRRERIVIVG 259
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 259 EQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPL 307
E LR F+ E+ L FP DF+ P +S Q Y GNS+++ ++ +
Sbjct: 345 ETGLRLFSELELKRLMGFPVDFKVP--VSRTQMYRQFGNSVAVPMIKAV 391
>sp|P31974|MTA1_CELCE Modification methylase AluI OS=Cellulosimicrobium cellulans
GN=aluIM PE=3 SV=1
Length = 521
Score = 38.5 bits (88), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 82/411 (19%), Positives = 132/411 (32%), Gaps = 124/411 (30%)
Query: 12 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEIL 71
PCQP+++ G Q ++ R F I +I + P +L +ENV + + I+
Sbjct: 83 PCQPFSKSGAQHGMAETRGTLFWNIARIIEE--REPTVLILENVRNLVGPRHRHEWLTII 140
Query: 72 ANSDYLTQEFILSPLQF----------GVPYSRPRYFCLAKRKPLSFR------------ 109
+ E +P F G P R R F A P R
Sbjct: 141 ETLRFFGYEVSGAPAIFSPHLLPAWMGGTPQVRERVFITATLVPERMRDERIPRTETGEI 200
Query: 110 -----------------------------------CQLLNNQLLRSPSPLLGNDDMTVIT 134
LL + ++R P N D+ +
Sbjct: 201 DAEAIGPKPVATMNDRFPIKKGGTELFHPGDRKSGWNLLTSGIIREGDPEPSNVDLRLTE 260
Query: 135 KHDQPDDSWDKLLESC-----DPVERFLEFSNS------------------------GD- 164
D+WD L + P+E F +++S GD
Sbjct: 261 TETLWIDAWDDLESTIRRATGRPLEGFPYWADSWTDFRELSRLVVIRGFQAPEREVVGDR 320
Query: 165 -----QVNTETGFL--STGTAAVDDFGAAEETVEVDRCVSI--DHFLVPLSLIERWGSAM 215
+ + GF+ S A+D+ A + + R HF ++ RWG
Sbjct: 321 KRYVARTDMPEGFVPASVTRPAIDETLPAWKQSHLRRNYDFFERHFAEVVAWAYRWGVYT 380
Query: 216 DIVYPDSKR---------------CCCFTKSYYRYVKGT--GSLLATVQPKNKGKASSLK 258
D+ +P S+R F S R + T +L+A Q +S+
Sbjct: 381 DL-FPASRRKLEWQAQDAPRLWDTVMHFRPSGIRAKRPTYLPALVAITQ-------TSIV 432
Query: 259 EQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQ 309
R +PRE A L P F F + Y +GN +++ VV +L+
Sbjct: 433 GPLERRLSPRETARLQGLPEWFDFGEQRAA-ATYKQMGNGVNVGVVRHILR 482
>sp|P34882|MTAA_SYNP2 Modification methylase AquI subunit alpha OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=aquIMA PE=3
SV=1
Length = 248
Score = 38.5 bits (88), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 10 SPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGF----ETSDTHA 65
PPCQ ++ G + D R L+ L ++ + P +ENV G + A
Sbjct: 79 GPPCQSFSLAGKRMGMDDPRGMLVLEFLRVVREAL--PKCFVMENVKGMINWSKGKALEA 136
Query: 66 KMIEILANSDYLTQEF-------ILSPLQFGVPYSRPRYFCLAKRKPLSFR 109
M E Y +E+ +L+ FGVP R R F + R +F+
Sbjct: 137 IMTEASQPIKYAGKEYKYAVSYHVLNAADFGVPQFRERVFIVGNRLGKTFQ 187
>sp|P06530|MTBR_BACIU Modification methylase BsuRI OS=Bacillus subtilis GN=hsdRM PE=3
SV=1
Length = 436
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 14/120 (11%)
Query: 12 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFET---SDTHAKMI 68
PC ++ G + D R F +L + + P + ENV G T + ++I
Sbjct: 156 PCPGFSEAG-PRLIDDDRNFLYLHFIRSLIQA--QPEIFVAENVKGMMTLGKGEVLNQII 212
Query: 69 EILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGND 128
E A++ Y Q +L+ +GVP R R RK +SF + PSP G +
Sbjct: 213 EDFASAGYRVQFKLLNARDYGVPQLRERVIIEGVRKDISFNYKY--------PSPTHGEE 264
>sp|P31033|MTM4_NEIGO Modification methylase NgoMIV OS=Neisseria gonorrhoeae GN=ngoMIVM
PE=3 SV=1
Length = 312
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 12 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVG-----FETSDTHAK 66
PC P+++ G Q D R F + + L T P + +ENV G FE H
Sbjct: 73 PCPPFSKAGKQLGKDDERDL-FPEAIRLAKET--DPKAIMLENVRGLLDPKFENYRNH-- 127
Query: 67 MIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLA 101
+ E A YL Q +L +GV RPR +A
Sbjct: 128 ITEQFAKLGYLGQWKLLYAADYGVSQLRPRVLFVA 162
>sp|P24600|MTD1_HERAU Modification methylase HgiDI OS=Herpetosiphon aurantiacus GN=hgiDIM
PE=3 SV=1
Length = 309
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 10 SPPCQPYTRQGLQKQSSDARA---FSFLKILELIPHTVKPPHMLFVENVVGFETSDTHAK 66
PPCQ ++ G ++ RA F KI+ I P + +ENV S H +
Sbjct: 72 GPPCQDFSSAG-KRDEGLGRANLTLDFAKIVLAIQ-----PAWVIMENVERARLSKIHQQ 125
Query: 67 MIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKR 103
+L + Y + +L GVP R R F + R
Sbjct: 126 ACSMLGDEGYSLAQVVLDASLCGVPQLRKRTFVIGHR 162
>sp|O33481|MTP1_PSYTA Modification methylase PspPI OS=Psychrobacter sp. (strain TA137)
GN=pspPIM PE=3 SV=1
Length = 416
Score = 35.8 bits (81), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 12/116 (10%)
Query: 12 PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSD---THAKMI 68
PCQP++ G Q D R ++ I P + ENV G +D T + +I
Sbjct: 148 PCQPFSYAGKQLGFEDLRGTLVFEMARAIKEI--KPKVFLAENVKGLAENDGGRTLSIII 205
Query: 69 EILANSDY-LTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSP 123
++L + Y + ++ + + + VP R R + R L + PSP
Sbjct: 206 KVLEDLGYKILEKEVYKAIFYKVPQKRERLIIIG------VRTDLYDKLAYEKPSP 255
>sp|Q94F87|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana
GN=CMT2 PE=2 SV=3
Length = 1295
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 263 RYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPL 307
R T RE A L FP FQF ++++RY +GN+++++V L
Sbjct: 1215 RVLTIRESARLQGFPDYFQFCG--TIKERYCQIGNAVAVSVSRAL 1257
>sp|P50185|MTD5_DACSA Modification methylase DsaV OS=Dactylococcopsis salina GN=dsaVM
PE=3 SV=1
Length = 351
Score = 34.7 bits (78), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 263 RYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 313
R TPRE A L FP F P +S Q + GNS+ ++V+ + Q + +
Sbjct: 259 RVLTPRECARLQGFPESFVIP--VSDCQAWRQFGNSVPVSVIRAIAQKMLS 307
>sp|P25262|MTB1_HERAU Modification methylase HgiBI OS=Herpetosiphon aurantiacus GN=hgiBIM
PE=3 SV=1
Length = 437
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 4 AHAWLLSP-PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSD 62
AH L+ PCQP++ G + D R + ++ L+ + P ENV G D
Sbjct: 65 AHDVLVGGVPCQPWSIAGKNQAFDDPRGQLWADVIRLV--QINQPKAFIFENVKGL--VD 120
Query: 63 THAKM-IEILANS----DYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSF 108
++ +EI+ +S Y +L+ FGV +R R F + ++ L
Sbjct: 121 PRNRLCLEIILDSFKDLGYSVFYKLLNSFDFGVAQNRDRVFIVGIQQKLDL 171
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 260 QHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYL 311
+ R T E A L FPG FQF H + + L+GNS++ V+ L + L
Sbjct: 375 KRYRKITVSEAARLQGFPGSFQF--HSNQSANFRLIGNSVAPPVIVALGKAL 424
>sp|P25266|MTE1_HERAU Modification methylase HgiEI OS=Herpetosiphon aurantiacus GN=hgiEIM
PE=3 SV=1
Length = 437
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 4 AHAWLLSP-PCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSD 62
AH L+ PCQP++ G + D R + ++ L+ + P ENV G D
Sbjct: 65 AHDVLVGGVPCQPWSIAGKNQAFDDPRGQLWADVIRLV--QINQPKAFIFENVKGL--VD 120
Query: 63 THAKM-IEILANS----DYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSF 108
++ +EI+ +S Y +L+ FGV +R R F + ++ L
Sbjct: 121 PRNRLCLEIILDSFKDLGYSVFYKLLNSFDFGVAQNRDRVFIVGIQQKLDL 171
>sp|P0AED9|DCM_ECOLI DNA-cytosine methyltransferase OS=Escherichia coli (strain K12)
GN=dcm PE=1 SV=1
Length = 472
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 212 GSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKAS---SLKEQHL-RYFTP 267
G +VYP++ + T S Y G L+ G+ L +QH R TP
Sbjct: 345 GFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTP 404
Query: 268 REVANLHSF--PGDFQFPHHLSLRQRYALLGNS 298
RE A L F PG+ +F +S Q Y GNS
Sbjct: 405 RECARLMGFEAPGEAKFRIPVSDTQAYRQFGNS 437
>sp|P0AEE0|DCM_ECO57 DNA-cytosine methyltransferase OS=Escherichia coli O157:H7 GN=dcm
PE=3 SV=1
Length = 472
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 212 GSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKAS---SLKEQHL-RYFTP 267
G +VYP++ + T S Y G L+ G+ L +QH R TP
Sbjct: 345 GFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTP 404
Query: 268 REVANLHSF--PGDFQFPHHLSLRQRYALLGNS 298
RE A L F PG+ +F +S Q Y GNS
Sbjct: 405 RECARLMGFEAPGEAKFRIPVSDTQAYRQFGNS 437
>sp|P37367|ATA1_SYNY3 Cation-transporting ATPase pma1 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=pma1 PE=3 SV=2
Length = 905
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 162 SGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPD 221
SGD+V + L VD+ E V V++ V + PL+ ER A
Sbjct: 150 SGDKVPADLRLLKVRNLQVDESALTGEAVPVEKAVELLPEETPLA--ERLNMA------- 200
Query: 222 SKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKASSLKEQHLRYFTP 267
+ S+ + +GTG ++AT G+ S E+ + TP
Sbjct: 201 ------YAGSFVTFGQGTGVVVATANATEMGQISQSMEKQVSLMTP 240
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,998,235
Number of Sequences: 539616
Number of extensions: 4980888
Number of successful extensions: 9488
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 9441
Number of HSP's gapped (non-prelim): 72
length of query: 316
length of database: 191,569,459
effective HSP length: 117
effective length of query: 199
effective length of database: 128,434,387
effective search space: 25558443013
effective search space used: 25558443013
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)