Query 021167
Match_columns 316
No_of_seqs 132 out of 1827
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 13:44:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qv2_A 5-cytosine DNA methyltr 100.0 3E-59 1E-63 426.7 23.3 244 3-315 76-325 (327)
2 4h0n_A DNMT2; SAH binding, tra 100.0 8.5E-59 2.9E-63 424.9 18.9 249 3-313 69-333 (333)
3 3g7u_A Cytosine-specific methy 100.0 2.6E-57 8.9E-62 421.8 17.8 257 3-315 71-367 (376)
4 1g55_A DNA cytosine methyltran 100.0 2.7E-57 9.4E-62 418.0 17.3 261 3-313 68-343 (343)
5 3ubt_Y Modification methylase 100.0 8E-57 2.7E-61 413.8 17.6 261 2-314 60-323 (331)
6 2c7p_A Modification methylase 100.0 1E-55 3.4E-60 404.1 17.5 247 3-315 71-322 (327)
7 4ft4_B DNA (cytosine-5)-methyl 100.0 2E-54 6.8E-59 439.2 22.6 298 3-315 379-741 (784)
8 3swr_A DNA (cytosine-5)-methyl 100.0 1.9E-52 6.5E-57 424.8 16.2 287 3-314 618-997 (1002)
9 3av4_A DNA (cytosine-5)-methyl 100.0 1.4E-50 4.8E-55 419.6 18.0 288 3-315 929-1308(1330)
10 4dkj_A Cytosine-specific methy 100.0 1.3E-50 4.3E-55 378.3 14.3 248 4-315 126-392 (403)
11 3me5_A Cytosine-specific methy 100.0 3.7E-48 1.3E-52 368.6 13.1 257 3-314 169-455 (482)
12 2qrv_A DNA (cytosine-5)-methyl 100.0 2.6E-45 9E-50 329.8 13.7 202 3-315 83-292 (295)
13 2pv0_B DNA (cytosine-5)-methyl 99.9 3.4E-23 1.1E-27 188.3 6.6 87 3-106 237-330 (386)
14 2qrv_B DNA (cytosine-5)-methyl 99.9 5.9E-23 2E-27 175.0 6.3 87 3-106 81-174 (230)
15 2igt_A SAM dependent methyltra 93.6 0.11 3.9E-06 46.6 6.4 94 3-102 225-323 (332)
16 3cgg_A SAM-dependent methyltra 57.2 21 0.00072 27.8 6.0 41 63-103 154-194 (195)
17 3c0k_A UPF0064 protein YCCW; P 49.2 28 0.00096 31.4 6.1 80 3-88 293-376 (396)
18 3zth_A STU0660; DNA binding, c 36.1 35 0.0012 30.0 4.2 44 31-74 179-225 (350)
19 2jmk_A Hypothetical protein TA 32.1 21 0.00071 25.2 1.7 18 63-80 92-109 (111)
20 2frn_A Hypothetical protein PH 30.7 75 0.0026 26.9 5.5 59 3-80 192-253 (278)
21 3qhq_A CSN2, SAG0897 family cr 24.4 2E+02 0.0069 23.8 6.9 61 29-92 142-206 (229)
22 2k44_A Hsapbk, K+-channel volt 23.5 16 0.00055 19.5 -0.1 9 270-278 20-28 (28)
23 2ih2_A Modification methylase 23.1 2.2E+02 0.0074 25.3 7.5 96 3-104 98-211 (421)
24 2lci_A Protein OR36; structura 20.4 2.1E+02 0.0072 20.1 5.1 41 32-78 38-78 (134)
No 1
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=100.00 E-value=3e-59 Score=426.67 Aligned_cols=244 Identities=37% Similarity=0.703 Sum_probs=207.9
Q ss_pred cccEEEeCCCCcHH--hhccCCCCCCCcchhhHHHHHH-HhhhhcCCCcEEEEcchhhhcCchHHHHHHHHHHcCCCeee
Q 021167 3 GAHAWLLSPPCQPY--TRQGLQKQSSDARAFSFLKILE-LIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQ 79 (316)
Q Consensus 3 ~~Dil~ggpPCq~f--S~ag~~~~~~d~r~~L~~~~~~-~i~~~~~~P~~~~~ENV~~~~~~~~~~~i~~~l~~~GY~v~ 79 (316)
++|+|+||||||+| |.+|++++.+|+|+.||+++++ +|+++.++|++|+||||+||+++.+++.|++.|+++||.+.
T Consensus 76 ~~Dil~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~ 155 (327)
T 3qv2_A 76 NCNTWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKESLVFKEIYNILIKNQYYIK 155 (327)
T ss_dssp CCCEEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGGSHHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcChHHHHHHHHHHHhCCCEEE
Confidence 58999999999999 9999999999999999999999 99987336999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCcEEEEEEEeCCCCcccccccccccCCCCCcCCCCCccccccCCCCCCcccccCccCCchHHhhhh
Q 021167 80 EFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEF 159 (316)
Q Consensus 80 ~~vlna~~yGvPQ~R~R~~iva~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 159 (316)
+.+|||++||+||+|+|+|+||+|++ + .||.+... ....++.|+|+.
T Consensus 156 ~~vl~a~~yGvPQ~R~R~fivg~r~~--f----------~fP~~~~~---------------------~~~~~l~d~Le~ 202 (327)
T 3qv2_A 156 DIICSPIDIGIPNSRTRYYVMARLTP--F----------KNEIQLHQ---------------------EKESMISNYLDN 202 (327)
T ss_dssp EEEECGGGGTCSBCCCEEEEEEESSC--C----------CSCCCCCC---------------------CSCCCGGGGCCS
T ss_pred EEEEeHHHcCCCccceEEEEEEEeCC--C----------CCCCcccc---------------------cccccHHHHhcc
Confidence 99999999999999999999999997 3 34544320 011237788863
Q ss_pred cCCCCCccccccccccccccccccCccccchhhccccccccccCcHHHhhhcCccccccCCCCCcccccccceeeeecCC
Q 021167 160 SNSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGT 239 (316)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~p~~~~~~~~~~~y~R~~~~~ 239 (316)
... .+|.+++..+.+++..+|++.|++..+.|++++|+++..++
T Consensus 203 ~~~------------------------------------~~y~l~~~~~~~~~~~~di~~~~~~~~~~~t~~y~~y~~~~ 246 (327)
T 3qv2_A 203 NVN------------------------------------ESYSIPSDLILKKGMLFDIVGKDDKRTCCFTKSYTKIVEGT 246 (327)
T ss_dssp SCC------------------------------------GGGBCCHHHHHHHGGGSCEEETTSSCBCCCCTTTTTSSTTS
T ss_pred ccc------------------------------------ccccCCHHHHHhhhcccccccccccccccccccceEEecCC
Confidence 211 33566777788888899999999998999999999999998
Q ss_pred Cceeeeecc--CCCCCCccccCCCcccCCHHHHHHhCCCCCCcccC-CCCCHHHHHHHhCCcccHHHHHHHHHHHHhhc
Q 021167 240 GSLLATVQP--KNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFP-HHLSLRQRYALLGNSLSIAVVAPLLQYLFAQA 315 (316)
Q Consensus 240 ~s~~~~~~~--~~~~~~~~ihp~~~R~LT~rE~arLqgFPd~f~f~-~~~s~~~~~~qiGNAVp~~v~~~i~~~l~~~~ 315 (316)
++.++.... ........+|+.+.|+||+||++|||||||+|.|+ +.+|.+++|+|+||||||+|+++|+++|++.+
T Consensus 247 gs~l~~~~~~~~~~~~~~~~~~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~~l 325 (327)
T 3qv2_A 247 GSIYCPIEPHFIPVKKAEDLLNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLFDDL 325 (327)
T ss_dssp CCEEESSCSSCCCCSSGGGGTTSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHHHHHHHHTTTS
T ss_pred CceeecccccccccCCceeecCCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHHHHHHHHHHHh
Confidence 888743221 11223567799999999999999999999999999 66799999999999999999999999998865
No 2
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=100.00 E-value=8.5e-59 Score=424.94 Aligned_cols=249 Identities=37% Similarity=0.712 Sum_probs=206.1
Q ss_pred cccEEEeCCCCcHHhhccCCCCCCCcchhhHHHHHHHhhhhcCC-CcEEEEcchhhhcCchHHHHHHHHHHcCCCeeeEE
Q 021167 3 GAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKP-PHMLFVENVVGFETSDTHAKMIEILANSDYLTQEF 81 (316)
Q Consensus 3 ~~Dil~ggpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~~~-P~~~~~ENV~~~~~~~~~~~i~~~l~~~GY~v~~~ 81 (316)
++|+|+||||||+||.||++++.+|+|+.||++++++|+++ + |++|+||||+|+++++.++.|++.|+++||.+.+.
T Consensus 69 ~~D~l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~--~~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~ 146 (333)
T 4h0n_A 69 NVDTILMSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQL--DNVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEF 146 (333)
T ss_dssp TCCEEEECCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGC--TTCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEE
T ss_pred CCCEEEecCCCcchhhhhhccCCcCcccccHHHHHHHHHHh--cCCCEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEE
Confidence 58999999999999999999999999999999999999999 7 99999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCcEEEEEEEeCCCCcccccccccccCCCCCcCCCCCccccccCCCCCCcccccCccCCchHHhhhhcC
Q 021167 82 ILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFSN 161 (316)
Q Consensus 82 vlna~~yGvPQ~R~R~~iva~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 161 (316)
+|||++||+||+|+|+|+||+++++.+.++..+...+.+|++.. ...++.|+|+...
T Consensus 147 vl~a~~~GvPQ~R~R~fiva~r~~~~~~f~~~~~~~~~~P~~~~-----------------------~~~~l~d~Le~~~ 203 (333)
T 4h0n_A 147 LLCPSTVGVPNSRLRYYCTARRNNLTWPFKRRDEIITRLPKDFG-----------------------VPHSLESIIEEDV 203 (333)
T ss_dssp EECTTTTTCSCCCCEEEEEEEETTSCCCSCCCSSCBSSCSSCCC-----------------------SCCCSSTTCCSSC
T ss_pred EecHHHcCCCccceEEEEEEEeCCCCCCCCcccchhhhCCCCcc-----------------------ccccHHHHhccCC
Confidence 99999999999999999999999987776554444455565432 1123667776431
Q ss_pred CCCCccccccccccccccccccCccccchhhccccccccccCcHHHhhhcCccccccCCCCCcccccccceeeeecCCCc
Q 021167 162 SGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGS 241 (316)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~p~~~~~~~~~~~y~R~~~~~~s 241 (316)
. .+|.+++..+ ++...+|+..|.+..+.|+++.|+++..++++
T Consensus 204 ~------------------------------------~~y~~~~~~~-~~~~~~d~~~~~~~~~~~~~k~~~~~~~g~gs 246 (333)
T 4h0n_A 204 D------------------------------------EKFLVPEKML-RCAKVFDICYKTSKRSCCFTKAYTHYADGTGS 246 (333)
T ss_dssp C------------------------------------GGGBCCHHHH-TTGGGCCEECTTCSCCCCCCTTBTTBSSSSCC
T ss_pred c------------------------------------ccccCCHHHH-HHHHHhccCChhhhhhhhhccccceEEeccCc
Confidence 1 2355666666 56667888888888889999999988887777
Q ss_pred eeeeec----------cCCC--CC---CccccCCCcccCCHHHHHHhCCCCCCcccCCCCCHHHHHHHhCCcccHHHHHH
Q 021167 242 LLATVQ----------PKNK--GK---ASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAP 306 (316)
Q Consensus 242 ~~~~~~----------~~~~--~~---~~~ihp~~~R~LT~rE~arLqgFPd~f~f~~~~s~~~~~~qiGNAVp~~v~~~ 306 (316)
...+.. .... +. ...+|+.+.|+||+|||+|||||||+|.|++.+|.+++|+|+||||+|+|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~GNsv~v~v~~~ 326 (333)
T 4h0n_A 247 IFTDKPREVVQKCYAAAAQNEIGGEKFVELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISE 326 (333)
T ss_dssp EECSSCHHHHHHHHHHGGGSCTTCHHHHHHHHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHTSCCHHHHHH
T ss_pred eeccccccchhhhhcccccCCCCcccceeeccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhCCccCHHHHHH
Confidence 543221 0000 01 12347889999999999999999999999988899999999999999999999
Q ss_pred HHHHHHh
Q 021167 307 LLQYLFA 313 (316)
Q Consensus 307 i~~~l~~ 313 (316)
|++.|++
T Consensus 327 i~~~l~~ 333 (333)
T 4h0n_A 327 LLKILFE 333 (333)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9999975
No 3
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=100.00 E-value=2.6e-57 Score=421.82 Aligned_cols=257 Identities=20% Similarity=0.255 Sum_probs=170.2
Q ss_pred cccEEEeCCCCcHHhhccCCCCCCCcchhhHHHHHHHhhhhcCCCcEEEEcchhhhcCch---HHHHHHHHHHcCCCee-
Q 021167 3 GAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETSD---THAKMIEILANSDYLT- 78 (316)
Q Consensus 3 ~~Dil~ggpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~---~~~~i~~~l~~~GY~v- 78 (316)
++|+|+||||||+||.+|++ +.+|+|+.||++++++|+++ +|++|+||||+||++.+ .++.|+ .|+++||.+
T Consensus 71 ~~D~i~ggpPCQ~fS~ag~~-~~~d~r~~L~~~~~~~v~~~--~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v~ 146 (376)
T 3g7u_A 71 PIDGIIGGPPCQGFSSIGKG-NPDDSRNQLYMHFYRLVSEL--QPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDIL 146 (376)
T ss_dssp CCCEEEECCCCCTTC--------CHHHHHHHHHHHHHHHHH--CCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEEC
T ss_pred CeeEEEecCCCCCcccccCC-CCCCchHHHHHHHHHHHHHh--CCCEEEEecchHhhccCcHHHHHHHH-HHHcCCCccC
Confidence 68999999999999999987 78999999999999999999 99999999999999753 789999 999999999
Q ss_pred eEEEEccCCCCCCCCCcEEEEEEEeCCCCcccccccccccCCCCCcCCCCCccccccCCCCCCcccccCccCCchHHhhh
Q 021167 79 QEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLE 158 (316)
Q Consensus 79 ~~~vlna~~yGvPQ~R~R~~iva~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 158 (316)
.+.+|||++|||||+|+|+|+||+|+++.++...+.+ . +. . .+..+++|.|.
T Consensus 147 ~~~vl~a~dyGvPQ~R~R~~iig~r~~~~~~~~~p~~---~-~~-~-----------------------~~~~tv~dai~ 198 (376)
T 3g7u_A 147 DPIKVKASDYGAPTIRTRYFFIGVKKSLKLDISDEVF---M-PK-M-----------------------IDPVTVKDALY 198 (376)
T ss_dssp CCEEEEGGGGTCSBCCEEEEEEEEEGGGCCCCCGGGT---S-CC-S-----------------------CCCCCHHHHTT
T ss_pred cEEEEEHhhCCCCCCCcEEEEEEEeCCCCCCcccccc---c-cc-c-----------------------CCCCcHHHHHh
Confidence 9999999999999999999999999987543211100 0 00 0 00011333333
Q ss_pred hcCCCCC-ccc--ccccccc--------------------c---------cccccccCccccchhhccccccccccCcHH
Q 021167 159 FSNSGDQ-VNT--ETGFLST--------------------G---------TAAVDDFGAAEETVEVDRCVSIDHFLVPLS 206 (316)
Q Consensus 159 ~~~~~~~-~~~--~~~~l~~--------------------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 206 (316)
....... ... ...+... . ......|....++ +.
T Consensus 199 dlp~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~---------------~~ 263 (376)
T 3g7u_A 199 GLPDIIDANWQSDSESWRTIKKDRKGGFYEKLWGQIPRNVGDTESIAKLKNNIISGCTGTLHS---------------KI 263 (376)
T ss_dssp TCCSSCEEESSCSSCCCEECCCCCCSHHHHHHHCCCCTTCSCHHHHHHHHTTEESCCEEECCC---------------HH
T ss_pred cCCcccccccccccccccccCccCccHHHHHhhcCcccccccccccccccccccccccccccC---------------HH
Confidence 2211000 000 0000000 0 0000000000000 00
Q ss_pred HhhhcCccccccCCCCCcccccccceeeeecCCCceeeeeccCCCC----CCccccCCCcccCCHHHHHHhCCCCCCccc
Q 021167 207 LIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKG----KASSLKEQHLRYFTPREVANLHSFPGDFQF 282 (316)
Q Consensus 207 ~~~~~~~~~d~~~p~~~~~~~~~~~y~R~~~~~~s~~~~~~~~~~~----~~~~ihp~~~R~LT~rE~arLqgFPd~f~f 282 (316)
.+.+.. .+ |.. ...++..|+|+.|+.+|+|++++..... +.+++||.++|.||+||+||||||||+|+|
T Consensus 264 ~~~r~~----~~-~~G--~~~~~~~~~Rl~~d~ps~Ti~~~~~~~~g~~~~~r~~HP~~~R~lTvRE~ARlQsFPD~f~f 336 (376)
T 3g7u_A 264 VQERYA----SL-SFG--ETDKISRSTRLDPNGFCPTLRAGTARDKGSFQAVRPIHPYHPRVITPREAARLQGFPDWFRF 336 (376)
T ss_dssp HHHHHH----TC-CTT--CBCTTTCCBBCCTTSCBCCC-------------CCCBCSSSSSBCCHHHHHHHHTCCTTCCC
T ss_pred HHHHHH----hC-CCC--CCccCCceeecCcccCCCceecCcCCCCCcccCccccCCccCcCCCHHHHHHhCCCCcceEE
Confidence 111110 00 100 0124567999999999999998754322 346799999999999999999999999999
Q ss_pred CCCCCHHHHHHHhCCcccHHHHHHHHHHHHhhc
Q 021167 283 PHHLSLRQRYALLGNSLSIAVVAPLLQYLFAQA 315 (316)
Q Consensus 283 ~~~~s~~~~~~qiGNAVp~~v~~~i~~~l~~~~ 315 (316)
.| +.+++|+||||||||+++++||++|++.+
T Consensus 337 ~g--~~~~~~~qIGNAVPp~la~aia~~I~~~l 367 (376)
T 3g7u_A 337 HV--TKWHSFRQIGNSVSPIVAEYILKGLYNLL 367 (376)
T ss_dssp CS--SHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred CC--ChHHhheeeecCCCHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999998753
No 4
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=100.00 E-value=2.7e-57 Score=417.95 Aligned_cols=261 Identities=39% Similarity=0.689 Sum_probs=171.0
Q ss_pred cccEEEeCCCCcHHhhccCCCCCCCcchhhHHHHHHHhhhhcCC--CcEEEEcchhhhcCchHHHHHHHHHHcCCCeeeE
Q 021167 3 GAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKP--PHMLFVENVVGFETSDTHAKMIEILANSDYLTQE 80 (316)
Q Consensus 3 ~~Dil~ggpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~~~--P~~~~~ENV~~~~~~~~~~~i~~~l~~~GY~v~~ 80 (316)
++|+|+||||||+||.||++++.+|+|+.||++++++|+++ + |++|+||||+||+++.+++.+++.|+++||.+.+
T Consensus 68 ~~D~l~~gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~--~~~P~~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v~~ 145 (343)
T 1g55_A 68 SFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRL--QKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQE 145 (343)
T ss_dssp CCSEEEECCC------------------CHHHHHHHHGGGC--SSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred CcCEEEEcCCCcchhhcCCcCCccCccchHHHHHHHHHHHh--cCCCCEEEEeCCccccCHHHHHHHHHHHHHCCCeeEE
Confidence 58999999999999999999989999999999999999999 8 9999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCcEEEEEEEeCCCCcccccccccccCCCCCcCCCCCccccccCCCCCCcccccCccCCchHHhhhhc
Q 021167 81 FILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEFS 160 (316)
Q Consensus 81 ~vlna~~yGvPQ~R~R~~iva~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 160 (316)
.+|||++||+||+|+|+|+||++++..+.+|.+++....+|... ..+.-.........++.++++..
T Consensus 146 ~vl~a~~~GvPQ~R~R~~iv~~~~~~~~~~p~~~~~~~~~~~~~-------------~~~~l~~~~~~~~~~~~~~l~~~ 212 (343)
T 1g55_A 146 FLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQVLMEFPKIE-------------IHRKNQQDSDLSVKMLKDFLEDD 212 (343)
T ss_dssp EEECGGGGTCSCCCCEEEEEEEESSSCCTTCCTTCEESSCCC-------------------------CCCCCGGGGCCTT
T ss_pred EEEEHHHCCCCCcccEEEEEEEeCCCCCCCCCCcchhhhCCHhH-------------hcCccCcccccccccHHHHhccC
Confidence 99999999999999999999999987655433222111111100 00000000000001133333210
Q ss_pred CCCCCccccccccccccccccccCccccchhhccccccccccCcHHHhhhcCccccccCCCCCcccccccceeeeecCCC
Q 021167 161 NSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTG 240 (316)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~p~~~~~~~~~~~y~R~~~~~~ 240 (316)
.. ...+.+++..+.++....|...|......|+++.|+.+..+.+
T Consensus 213 ~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 257 (343)
T 1g55_A 213 TD-----------------------------------VNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTG 257 (343)
T ss_dssp CC-----------------------------------HHHHBCCHHHHHHHGGGCCEECTTCSCCCCCCTTTTTCCTTSC
T ss_pred cc-----------------------------------hhhccCCHHHHHHHHHHhCCCCccccccchhhccceeeecccc
Confidence 00 0113344545555555566666665556677776665544444
Q ss_pred ceeeeec----------cCC---CCCCccccCCCcccCCHHHHHHhCCCCCCcccCCCCCHHHHHHHhCCcccHHHHHHH
Q 021167 241 SLLATVQ----------PKN---KGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPL 307 (316)
Q Consensus 241 s~~~~~~----------~~~---~~~~~~ihp~~~R~LT~rE~arLqgFPd~f~f~~~~s~~~~~~qiGNAVp~~v~~~i 307 (316)
+...+.. ... ......+||.+.|.||+|||||||||||+|+|+|.+|.+++|+||||||||+|+++|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~R~lT~RE~aRLqgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~~~I 337 (343)
T 1g55_A 258 SVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKL 337 (343)
T ss_dssp CEEECCSSCCHHHHHHTTTTCCHHHHHHHHHTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHH
T ss_pred cccccccccchhhccccccCCCCccceeccCCCCccccCHHHHHHHcCCChhhccCCCCCHHHHHHHhcCcccHHHHHHH
Confidence 4322110 000 012345799999999999999999999999999877999999999999999999999
Q ss_pred HHHHHh
Q 021167 308 LQYLFA 313 (316)
Q Consensus 308 ~~~l~~ 313 (316)
++.|++
T Consensus 338 ~~~l~~ 343 (343)
T 1g55_A 338 IKILYE 343 (343)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 999974
No 5
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=100.00 E-value=8e-57 Score=413.83 Aligned_cols=261 Identities=18% Similarity=0.263 Sum_probs=168.1
Q ss_pred CcccEEEeCCCCcHHhhccCCCCCCCcchhhHHHHHHHhhhhcCCCcEEEEcchhhhcCc---hHHHHHHHHHHcCCCee
Q 021167 2 YGAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETS---DTHAKMIEILANSDYLT 78 (316)
Q Consensus 2 ~~~Dil~ggpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~~~P~~~~~ENV~~~~~~---~~~~~i~~~l~~~GY~v 78 (316)
.++|+|+||||||+||.||++++.+|+|+.||++++|+|+++ +|++|+||||+||+++ ..++.|++.|+++||.+
T Consensus 60 ~~~D~l~ggpPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~--~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v 137 (331)
T 3ubt_Y 60 PKCDGIIGGPPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQK--KPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDV 137 (331)
T ss_dssp CCCSEEECCCCGGGTEETTEECCTTCGGGHHHHHHHHHHHHH--CCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEE
T ss_pred CcccEEEecCCCCCcCCCCCccCCCCchhHHHHHHHHHHhcc--CCeEEEeeeecccccccccchhhhhhhhhccCCcEE
Confidence 368999999999999999999999999999999999999999 9999999999999876 48999999999999999
Q ss_pred eEEEEccCCCCCCCCCcEEEEEEEeCCCCcccccccccccCCCCCcCCCCCccccccCCCCCCcccccCccCCchHHhhh
Q 021167 79 QEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLE 158 (316)
Q Consensus 79 ~~~vlna~~yGvPQ~R~R~~iva~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 158 (316)
.+.+|||++|||||+|+|+|+||+|++..+.+ .+|.+.... .++.+.+.
T Consensus 138 ~~~vlna~~yGvPQ~R~Rvfivg~r~~~~~~~--------~~p~~~~~~-----------------------~t~~d~i~ 186 (331)
T 3ubt_Y 138 HIILLNANDYGVAQDRKRVFYIGFRKELNINY--------LPPIPHLIK-----------------------PTFKDVIW 186 (331)
T ss_dssp EEEEEEGGGTTCSBCCEEEEEEEEEGGGCCCC--------CCCCCCSCC-----------------------CCGGGTSG
T ss_pred EEEecccccCCCCcccceEEEEEEcCCCCcCC--------CCCCCcCCC-----------------------CcHHHHhh
Confidence 99999999999999999999999999865443 122222100 01122221
Q ss_pred hcCCCCCccccccccccccccccccCccccchhhccccccccccCcHHHhhhcCccccccCCCCCcccccccceeeeecC
Q 021167 159 FSNSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKG 238 (316)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~p~~~~~~~~~~~y~R~~~~ 238 (316)
...+.. .+....... ....... .++......... .........+...+... ......+.++...
T Consensus 187 ~l~~~~-~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 250 (331)
T 3ubt_Y 187 DLKDNP-IPALDKNKT---NGNKCIY-PNHEYFIGSYST---------IFMSRNRVRQWNEPAFT--VQASGRQCQLHPQ 250 (331)
T ss_dssp GGSSSC-EECBGGGBC---CGGGSSS-TTCEECCSCCCT---------TGGGSCCBCCTTSCBCC--CCSCSTTCCBCTT
T ss_pred hcccCC-ccccccccc---ccccccc-cchhhhcccccc---------ccccccccccccccccc--ccccCcccccccc
Confidence 111000 000000000 0000000 000000000000 00000000000000000 0011112233333
Q ss_pred CCceeeeeccCCCCCCccccCCCcccCCHHHHHHhCCCCCCcccCCCCCHHHHHHHhCCcccHHHHHHHHHHHHhh
Q 021167 239 TGSLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFAQ 314 (316)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~ihp~~~R~LT~rE~arLqgFPd~f~f~~~~s~~~~~~qiGNAVp~~v~~~i~~~l~~~ 314 (316)
.++.+.... ........|+.+.|.||+|||||||||||+|+|++. |.+++|+||||||||+|+++||++|++.
T Consensus 251 ~~~~~~~~~--~~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f~~~-s~~~~ykqiGNAVpp~la~~I~~~I~~~ 323 (331)
T 3ubt_Y 251 APVMLKVSK--NLNKFVEGKEHLYRRLTVRECARVQGFPDDFIFHYE-SLNDGYKMIGNAVPVNLAYEIAKTIKSA 323 (331)
T ss_dssp SCCCEEEET--TEEECCTTCGGGCCBCBHHHHHHHHTCCTTCCCCCS-BHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred cceeeeecC--CCCcccCCCCCcCcCCCHHHHHHhCCCCCCCEeCCC-CHHHHhhhCccCccHHHHHHHHHHHHHH
Confidence 333333322 122334557888999999999999999999999743 8999999999999999999999999865
No 6
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=100.00 E-value=1e-55 Score=404.14 Aligned_cols=247 Identities=21% Similarity=0.291 Sum_probs=179.2
Q ss_pred cccEEEeCCCCcHHhhccCCCCCCCcchhhHHHHHHHhhhhcCCCcEEEEcchhhhcCc---hHHHHHHHHHHcCCCeee
Q 021167 3 GAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETS---DTHAKMIEILANSDYLTQ 79 (316)
Q Consensus 3 ~~Dil~ggpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~~~P~~~~~ENV~~~~~~---~~~~~i~~~l~~~GY~v~ 79 (316)
++|+|+||||||+||.||++++.+|+|+.||++++|+|+++ +|++|+||||+|++++ ..|+.|++.|+++||.+.
T Consensus 71 ~~D~l~~gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~--~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~ 148 (327)
T 2c7p_A 71 DHDILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREK--KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFH 148 (327)
T ss_dssp CCSEEEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHH--CCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCE
T ss_pred CCCEEEECCCCCCcchhcccCCCcchhhHHHHHHHHHHHhc--cCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEE
Confidence 58999999999999999999888999999999999999999 9999999999999975 489999999999999999
Q ss_pred EEEEccCCCCCCCCCcEEEEEEEeCCCCcccccccccccCCCCCcCCCCCccccccCCCCCCcccccCccCCchHHhhhh
Q 021167 80 EFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLEF 159 (316)
Q Consensus 80 ~~vlna~~yGvPQ~R~R~~iva~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 159 (316)
+.+|||++|||||+|+|+|+||+++++.. ..+.||.+.. .. .++.|+|+.
T Consensus 149 ~~vl~a~~~GvPQ~R~R~~iv~~~~~~~~-------~~~~fP~~~~--~~---------------------~tl~d~l~~ 198 (327)
T 2c7p_A 149 AKVLNALDYGIPQKRERIYMICFRNDLNI-------QNFQFPKPFE--LN---------------------TFVKDLLLP 198 (327)
T ss_dssp EEEEEGGGGTCSBCCEEEEEEEEBGGGCC-------CCCCCCCCCC--CC---------------------CCGGGTCCC
T ss_pred EEEEEHHHcCCCccceEEEEEEEeCCCCc-------ccccCCCCcC--CC---------------------CcHHHHhcc
Confidence 99999999999999999999999987521 1245565542 00 124455542
Q ss_pred cCCCCCccccccccccccccccccCccccchhhccccccccccCcHHHhhhcCccccccCCCCCcccccccceeeeecCC
Q 021167 160 SNSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGT 239 (316)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~p~~~~~~~~~~~y~R~~~~~ 239 (316)
..... ...+....+.. .+. ..+. +. .......+. .. .+ ..|+|+.++.
T Consensus 199 ~~~~~-----~~~~~~~~~~~-~l~--------------~~~~-~~----~~~~~~~~~---~~--~~--~~~~~~~~~~ 246 (327)
T 2c7p_A 199 DSEVE-----HLVIDRKDLVM-TNQ--------------EIEQ-TT----PKTVRLGIV---GK--GG--QGERIYSTRG 246 (327)
T ss_dssp GGGTG-----GGEECCTTCEE-CSC--------------CCSS-CC----SSCCEEEES---TT--CC--TTCEEEETTS
T ss_pred cCCcc-----cccccCCccee-Eee--------------cccc-Cc----cchhhhhhc---cC--Cc--cccccccCCC
Confidence 11000 00000000000 000 0000 00 000000000 00 01 1357777788
Q ss_pred CceeeeeccC--CCCCCccccCCCcccCCHHHHHHhCCCCCCcccCCCCCHHHHHHHhCCcccHHHHHHHHHHHHhhc
Q 021167 240 GSLLATVQPK--NKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFAQA 315 (316)
Q Consensus 240 ~s~~~~~~~~--~~~~~~~ihp~~~R~LT~rE~arLqgFPd~f~f~~~~s~~~~~~qiGNAVp~~v~~~i~~~l~~~~ 315 (316)
+++|+++... ....+..+||.+.|.||+|||||||||||+|+|.+ |.+++|+||||||||+|+++||++|++.+
T Consensus 247 ~~~Ti~~~~~~~~~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f~g--s~~~~ykqIGNAVp~~l~~~Ia~~i~~~l 322 (327)
T 2c7p_A 247 IAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHP--STSQAYKQFGNSVVINVLQYIAYNIGSSL 322 (327)
T ss_dssp CBCCCCSSCCSTTTTTCEEEETTEEEECCHHHHHHHTTCCTTSCCCS--SHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CcCceecCCCCccCCCCccCCCCCCcCCCHHHHHHHCCCCcCcEeCC--CHHHHHhHccCCCCHHHHHHHHHHHHHHH
Confidence 9999887621 12234577899999999999999999999999998 99999999999999999999999998753
No 7
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=100.00 E-value=2e-54 Score=439.16 Aligned_cols=298 Identities=14% Similarity=0.159 Sum_probs=189.1
Q ss_pred cccEEEeCCCCcHHhhccCCCC----CCCcchhhHHHHHHHhhhhcCCCcEEEEcchhhhcCc---hHHHHHHHHHHcCC
Q 021167 3 GAHAWLLSPPCQPYTRQGLQKQ----SSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETS---DTHAKMIEILANSD 75 (316)
Q Consensus 3 ~~Dil~ggpPCq~fS~ag~~~~----~~d~r~~L~~~~~~~i~~~~~~P~~~~~ENV~~~~~~---~~~~~i~~~l~~~G 75 (316)
++|||+||||||+||.||++++ .+|+|+.||++|+|+|+++ +|++||||||+||++. .+|+.|++.|+++|
T Consensus 379 ~VDvl~GGpPCQ~FS~aG~~kg~~~~~~D~R~~L~~~~~riv~~~--rPk~fvlENV~glls~~~g~~~~~il~~l~~lG 456 (784)
T 4ft4_B 379 DVDVICGGPPCQGISGFNRYRNRDEPLKDEKNKQMVTFMDIVAYL--KPKYVLMENVVDILKFADGYLGKYALSCLVAMK 456 (784)
T ss_dssp SCSEEEECCCCCSSSGGGGGSCTTSTTTSTTCHHHHHHHHHHHHH--CCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTT
T ss_pred CeEEEEecCCCcchhhhhcccCcCccccCchhHHHHHHHHHHHHH--CCCEEEEEecCCccccccchHHHHHHHHHHhCC
Confidence 6899999999999999998875 5789999999999999999 9999999999999876 48999999999999
Q ss_pred CeeeEEEEccCCCCCCCCCcEEEEEEEeCCCCc-ccccccccccCCCCCcCCCCCccccccCCCCCCcccccCccCCchH
Q 021167 76 YLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSF-RCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVE 154 (316)
Q Consensus 76 Y~v~~~vlna~~yGvPQ~R~R~~iva~r~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 154 (316)
|.+.+.+|||++|||||+|+|+||||+|++... .+|.+++............... .. ...............+.
T Consensus 457 Y~v~~~vLnA~dyGVPQ~R~Rvfivg~r~d~~~~~~P~pth~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~t~~ 531 (784)
T 4ft4_B 457 YQARLGMMVAGCYGLPQFRMRVFLWGALSSMVLPKYPLPTYDVVVRGGAPNAFSQC-MV----AYDETQKPSLKKALLLG 531 (784)
T ss_dssp CEEEEEEEEGGGGTCSSCCEEEEEEEECTTSCCCCEECCSBCCCCCSCSCGGGTTC-BC----SCCTTCCCCCBCCCCHH
T ss_pred CeeeeeecCHHHcCCCcccccceeeeeccCCCcccCCCcccccccccccccccccc-cc----cccccccccccccccHH
Confidence 999999999999999999999999999998743 2322221100000000000000 00 00000000011112244
Q ss_pred HhhhhcCCCCC-ccccc-cc-----------ccccc-c-----cccccCccccchhhccccccccccCcHHHh-------
Q 021167 155 RFLEFSNSGDQ-VNTET-GF-----------LSTGT-A-----AVDDFGAAEETVEVDRCVSIDHFLVPLSLI------- 208 (316)
Q Consensus 155 ~~l~~~~~~~~-~~~~~-~~-----------l~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------- 208 (316)
+.+........ ..... .. +.... . .......... ...+. ..........
T Consensus 532 dai~dlp~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~h----~~~~~~~~~~~r~~~i~ 606 (784)
T 4ft4_B 532 DAISDLPKVQNHQPNDVMEYGGSPKTEFQRYIRLSRKDMLDWSFGEGAGPDEG-KLLDH----QPLRLNNDDYERVQQIP 606 (784)
T ss_dssp HHHTTSCCCCSCCCCSEECCSSCCCSHHHHHHTCCTTTTTCCTTCSSCCSSTT-CEECC----CCCCCCHHHHHHHHHSC
T ss_pred HHhhcccccccCCCccccccCCCCccHHHHHHhhccccccccccccccccccc-ccccc----cccccCHHHHHHHHhcc
Confidence 55543322110 00000 00 00000 0 0000000000 00000 0000000000
Q ss_pred -hhcCccccccC------------CC-------C-----------CcccccccceeeeecCCCceeeeeccCCCCCCccc
Q 021167 209 -ERWGSAMDIVY------------PD-------S-----------KRCCCFTKSYYRYVKGTGSLLATVQPKNKGKASSL 257 (316)
Q Consensus 209 -~~~~~~~d~~~------------p~-------~-----------~~~~~~~~~y~R~~~~~~s~~~~~~~~~~~~~~~i 257 (316)
..+++..|+.. +. . .....+...|+|+.++.+++|++++.. .....++
T Consensus 607 ~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~rl~~d~ps~TItt~~~-~~~~~~i 685 (784)
T 4ft4_B 607 VKKGANFRDLKGVRVGANNIVEWDPEIERVKLSSGKPLVPDYAMSFIKGKSLKPFGRLWWDETVPTVVTRAE-PHNQVII 685 (784)
T ss_dssp SSTTCCGGGSTTEEECGGGCEEECTTSCCCBCTTSSBSSCHHHHHGGGGTCCCTTEECCTTCCCSCCCSCCC-SSSSEEE
T ss_pred cccCCcccccccccccccccccccchhhhcccccCcccccccccccccCCcCccceeccCCCcccceecccc-CCCCeec
Confidence 01111222110 00 0 011235567899999999999998754 4567899
Q ss_pred cCCCcccCCHHHHHHhCCCCCCcccCCCCCHHHHHHHhCCcccHHHHHHHHHHHHhhc
Q 021167 258 KEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFAQA 315 (316)
Q Consensus 258 hp~~~R~LT~rE~arLqgFPd~f~f~~~~s~~~~~~qiGNAVp~~v~~~i~~~l~~~~ 315 (316)
||.+.|+||||||||||||||+|.|.| +.+++|+||||||||+||++||++|.+++
T Consensus 686 Hp~~~R~LTpRE~ARLQgFPD~y~f~G--s~~~~ykQIGNAVpp~lA~aIg~~I~~al 741 (784)
T 4ft4_B 686 HPTQARVLTIRENARLQGFPDYYRLFG--PIKEKYIQVGNAVAVPVARALGYCLGQAY 741 (784)
T ss_dssp CSSSSSBCCHHHHHHHTTCCTTCCCCS--CHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCcHHHHHHHCCCCCCCEeCC--CHHHHHhhccCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 99999999999999999999999998753
No 8
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=100.00 E-value=1.9e-52 Score=424.78 Aligned_cols=287 Identities=17% Similarity=0.131 Sum_probs=190.3
Q ss_pred cccEEEeCCCCcHHhhccCCC--CCCCcchhhHHHHHHHhhhhcCCCcEEEEcchhhhcCc---hHHHHHHHHHHcCCCe
Q 021167 3 GAHAWLLSPPCQPYTRQGLQK--QSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETS---DTHAKMIEILANSDYL 77 (316)
Q Consensus 3 ~~Dil~ggpPCq~fS~ag~~~--~~~d~r~~L~~~~~~~i~~~~~~P~~~~~ENV~~~~~~---~~~~~i~~~l~~~GY~ 77 (316)
++|||+||||||+||.+|+.+ +.+|+|+.||++|+++|+++ +|++||||||+||++. ..++.|++.|+++||+
T Consensus 618 ~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~~riv~~~--rPk~~llENV~glls~~~~~~~~~i~~~L~~lGY~ 695 (1002)
T 3swr_A 618 DVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYY--RPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQ 695 (1002)
T ss_dssp TCSEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHHHHHHHHH--CCSEEEEEEEGGGGTTGGGHHHHHHHHHHHHHTCE
T ss_pred CeeEEEEcCCCcchhhhCCCCCCcccchhhHHHHHHHHHHHHh--CCCEEEEeccHHHhccCcchHHHHHHHHHHhcCCe
Confidence 589999999999999999753 34678999999999999999 9999999999999875 4799999999999999
Q ss_pred eeEEEEccCCCCCCCCCcEEEEEEEeCCCCcccccccccccCCCCCcCCCCCc----c-ccccCC-CCCCcccc-cCccC
Q 021167 78 TQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDM----T-VITKHD-QPDDSWDK-LLESC 150 (316)
Q Consensus 78 v~~~vlna~~yGvPQ~R~R~~iva~r~~~~~~~~~~~~~~~~~p~~~~~~~~~----~-~~~~~~-~~~~~~~~-~~~~~ 150 (316)
+.+.+|||++|||||+|+|+||||++.+..++ .+|.|+...... . ..+... .....|.. .....
T Consensus 696 v~~~vLnA~dyGvPQ~R~R~fiva~r~g~~~p---------~~P~pth~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~ 766 (1002)
T 3swr_A 696 CTFGVLQAGQYGVAQTRRRAIILAAAPGEKLP---------LFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRT 766 (1002)
T ss_dssp EEEEEEEGGGGTCSBCCEEEEEEEECTTSCCC---------CCCCCCBCCCGGGCCCCEEETTEEECCSCCCSSCCSBCC
T ss_pred EEEEEEEHHHCCCCccceEEEEEEEeCCCCCC---------CCCCccccccccccccccccccccccccccccccCCcCC
Confidence 99999999999999999999999999987542 234433211100 0 000000 00000100 00112
Q ss_pred CchHHhhhhcCCCCC---ccccc------cc----cc-------cccccccccCccccchhhccccccccccCcHHHhhh
Q 021167 151 DPVERFLEFSNSGDQ---VNTET------GF----LS-------TGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIER 210 (316)
Q Consensus 151 ~~l~~~l~~~~~~~~---~~~~~------~~----l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 210 (316)
.++.|.|........ ..... .. +. ..+|.+..+... .+.|+. .+|. ..
T Consensus 767 vTV~DAIsDLP~i~~g~~~~~~~y~~~p~s~yq~~mR~~~~~~~l~~H~~~~~s~~----~~~Ri~-----~IP~---~~ 834 (1002)
T 3swr_A 767 ITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPILRDHICKDMSAL----VAARMR-----HIPL---AP 834 (1002)
T ss_dssp CCHHHHHTTSCCCCTTCCCSEECCCSCCCSHHHHHHHTTCSSCCEECCCCCCCCHH----HHHHHH-----TSCC---ST
T ss_pred cCHHHHhhhCCccccCccccccccCCCCccHHHHHhhcccccccccCcccccCCHH----HHHHHh-----cCCC---CC
Confidence 246666654432110 00000 00 00 011222222110 112211 1110 01
Q ss_pred cCccccccC-------------------------------------------------------CC-----CCccccccc
Q 021167 211 WGSAMDIVY-------------------------------------------------------PD-----SKRCCCFTK 230 (316)
Q Consensus 211 ~~~~~d~~~-------------------------------------------------------p~-----~~~~~~~~~ 230 (316)
++++.|++. |. ..+...++.
T Consensus 835 Gg~wrdlP~~~~~l~~~~~~~~l~~~~~~~~~g~~~~~~l~~~c~~~~~Gk~~~p~~~~~~~l~p~~~~~~~~r~~~~~~ 914 (1002)
T 3swr_A 835 GSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAG 914 (1002)
T ss_dssp TCCGGGCCCCCEECTTSCEEBCCCCCBCCTTTCCCTTCCCCBCSGGGSSSCCCCGGGCCCSBSSCTHHHHHGGGTGGGTT
T ss_pred CCChhhCchhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCc
Confidence 222222211 00 001124577
Q ss_pred ceeeeecCCC-ceeeeeccCCCCCCccccCCCcccCCHHHHHHhCCCCCCcccCCCCCHHHHHHHhCCcccHHHHHHHHH
Q 021167 231 SYYRYVKGTG-SLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQ 309 (316)
Q Consensus 231 ~y~R~~~~~~-s~~~~~~~~~~~~~~~ihp~~~R~LT~rE~arLqgFPd~f~f~~~~s~~~~~~qiGNAVp~~v~~~i~~ 309 (316)
.|+|+.|+.+ +.|++........+.++||.++|.||+||+||||||||+|.|.| +.+++|+||||||||+++++||+
T Consensus 915 ~ygRL~wd~p~~~~it~~~~~~~~g~~~Hp~~~R~lt~rE~arlQ~fPd~~~f~g--~~~~~~~qiGNaVp~~~~~~i~~ 992 (1002)
T 3swr_A 915 LYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFG--NILDKHRQVGNAVPPPLAKAIGL 992 (1002)
T ss_dssp TTCBCCTTSCBSSCCSSCCTTCTTCCCBCSSSSSBCCHHHHHHHTTCCTTCCCCS--SHHHHHHHHHHSCCHHHHHHHHH
T ss_pred cceeeccCCCCCeeEecCCCCCCCCcccCcccccCCCHHHHHHhCCCCcceEEcC--ChHHHheeeeccCCHHHHHHHHH
Confidence 8999999999 55555433334578899999999999999999999999999999 99999999999999999999999
Q ss_pred HHHhh
Q 021167 310 YLFAQ 314 (316)
Q Consensus 310 ~l~~~ 314 (316)
+|.+.
T Consensus 993 ~i~~~ 997 (1002)
T 3swr_A 993 EIKLC 997 (1002)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 9
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=100.00 E-value=1.4e-50 Score=419.57 Aligned_cols=288 Identities=17% Similarity=0.160 Sum_probs=184.2
Q ss_pred cccEEEeCCCCcHHhhccCCC--CCCCcchhhHHHHHHHhhhhcCCCcEEEEcchhhhcCc---hHHHHHHHHHHcCCCe
Q 021167 3 GAHAWLLSPPCQPYTRQGLQK--QSSDARAFSFLKILELIPHTVKPPHMLFVENVVGFETS---DTHAKMIEILANSDYL 77 (316)
Q Consensus 3 ~~Dil~ggpPCq~fS~ag~~~--~~~d~r~~L~~~~~~~i~~~~~~P~~~~~ENV~~~~~~---~~~~~i~~~l~~~GY~ 77 (316)
++|||+||||||+||.+|+++ +.+|+|+.||++|+++|+.+ +|++||||||+||++. .+++.|++.|+++||.
T Consensus 929 ~vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~L~~~~lriv~~~--rPk~fv~ENV~glls~~~g~~~~~il~~L~~lGY~ 1006 (1330)
T 3av4_A 929 DVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYY--RPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQ 1006 (1330)
T ss_dssp TCSEEEECCCCTTTCSSSCCCHHHHHHHHHSHHHHHHHHHHHH--CCSEEEEEEEGGGGTTTTTHHHHHHHHHHHHHTCE
T ss_pred ccceEEecCCCcccccccccccccccchhhHHHHHHHHHHHHh--cCcEEEEeccHHHhccCccHHHHHHHHHHHhcCCe
Confidence 589999999999999999753 34688999999999999999 9999999999999875 3799999999999999
Q ss_pred eeEEEEccCCCCCCCCCcEEEEEEEeCCCCcccccccccccCCCCCcCCCCC----cc-ccccCC-CCCCccccc-CccC
Q 021167 78 TQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDD----MT-VITKHD-QPDDSWDKL-LESC 150 (316)
Q Consensus 78 v~~~vlna~~yGvPQ~R~R~~iva~r~~~~~~~~~~~~~~~~~p~~~~~~~~----~~-~~~~~~-~~~~~~~~~-~~~~ 150 (316)
+.+.+|||++|||||+|+|+||||++.+..+. .+|.++..... +. ..+... .....|... ....
T Consensus 1007 v~~~vLnA~dyGVPQ~R~Rvfivg~r~~~~~~---------~fP~pth~~~~~~~~l~~~~~~~~~~~~i~~~~~~p~~~ 1077 (1330)
T 3av4_A 1007 CTFGVLQAGQYGVAQTRRRAIILAAAPGEKLP---------LFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRT 1077 (1330)
T ss_dssp EEEEEEEGGGGSCSBCCEEEEEEEECTTSCCC---------CCCCCCBCCCGGGCCCCEEETTEEECCSCCCSSCCSBCC
T ss_pred eeEEEecHHHcCCCccccEEEEEEecCCCccc---------CCCCccccccccccccccccccccccccccccccCCcCC
Confidence 99999999999999999999999999876432 23443321100 00 000000 000001000 0011
Q ss_pred CchHHhhhhcCCCC-Cc-----c--cc-cccc-----------ccccccccccCccccchhhccccccccccCcHHHhhh
Q 021167 151 DPVERFLEFSNSGD-QV-----N--TE-TGFL-----------STGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIER 210 (316)
Q Consensus 151 ~~l~~~l~~~~~~~-~~-----~--~~-~~~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 210 (316)
.+++|.|....... .. + .. ..++ ....|.+..+.. ....|... +|. ..
T Consensus 1078 vTV~DAI~DLP~i~~g~~~~~~~y~~~p~s~~q~~iR~~~~~~~l~~H~~~~~s~----~~~~Ri~~-----ip~---~~ 1145 (1330)
T 3av4_A 1078 ITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLRGSHYQPILRDHICKDMSP----LVAARMRH-----IPL---FP 1145 (1330)
T ss_dssp CCHHHHHTTSCCCCTTCCCSEEECCSCCCSHHHHHHHCSSCCCEEECCCCCCCCH----HHHHHHHH-----SCS---ST
T ss_pred CcHHHHhhcCcccccCCcccccccCCCcccHHHHHhhccccccccccccccccCH----HHHHHHHh-----ccC---CC
Confidence 23667665433211 00 0 00 0000 001111111100 00111000 000 00
Q ss_pred cCcccccc--------------------------------------------CCCC---------------Ccccccccc
Q 021167 211 WGSAMDIV--------------------------------------------YPDS---------------KRCCCFTKS 231 (316)
Q Consensus 211 ~~~~~d~~--------------------------------------------~p~~---------------~~~~~~~~~ 231 (316)
++++.|+. .|.. .....++..
T Consensus 1146 G~~~~dlp~~~~~l~~g~~~~~l~y~~~~~k~g~~~~~~lrg~~~~~~Gk~~~p~~r~~~tL~p~~~~~~g~~~~~~~~~ 1225 (1330)
T 3av4_A 1146 GSDWRDLPNIQVRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTGNRHNHWAGL 1225 (1330)
T ss_dssp TCCGGGCCCCCEECSSSCEEBCCCCCBCCTTTCCCTTSCCCBSSGGGGTSCCCSSSCCCSBSSCTHHHHHGGGTGGGTTT
T ss_pred CCCcccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 01111110 0000 011134567
Q ss_pred eeeeecCCCceeeeeccC-CCCCCccccCCCcccCCHHHHHHhCCCCCCcccCCCCCHHHHHHHhCCcccHHHHHHHHHH
Q 021167 232 YYRYVKGTGSLLATVQPK-NKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQY 310 (316)
Q Consensus 232 y~R~~~~~~s~~~~~~~~-~~~~~~~ihp~~~R~LT~rE~arLqgFPd~f~f~~~~s~~~~~~qiGNAVp~~v~~~i~~~ 310 (316)
|+|+.|+.++.++++... ....+.++||.++|.||+||+||||||||+|.|.| +.+++|+||||||||+||++||++
T Consensus 1226 ygRL~~d~p~sttiT~~~~~~k~g~~iHP~q~R~LTVREaARLQsFPDdF~F~G--s~t~~yrQIGNAVPPlLAkAIA~~ 1303 (1330)
T 3av4_A 1226 YGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFG--NILDRHRQVGNAVPPPLAKAIGLE 1303 (1330)
T ss_dssp TCBCCTTSCBSSCCSSCCTTSSSCCCBCSSSSSBCCHHHHHHHTTCCTTCCCCS--SHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred ceecccCCCCCceEeCCcccCCCCcccCccccccCCHHHHHHhcCCCCCeEECC--CHhhhhEEeEeCcCHHHHHHHHHH
Confidence 999999987555544322 12245789999999999999999999999999999 899999999999999999999999
Q ss_pred HHhhc
Q 021167 311 LFAQA 315 (316)
Q Consensus 311 l~~~~ 315 (316)
|++.+
T Consensus 1304 I~~~L 1308 (1330)
T 3av4_A 1304 IKLCL 1308 (1330)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98753
No 10
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=100.00 E-value=1.3e-50 Score=378.30 Aligned_cols=248 Identities=20% Similarity=0.221 Sum_probs=168.9
Q ss_pred ccEEEeCCCCcHHhhccCCCCCCC---cchhhHHHHHHHhhh--------hcCCCcEEEEcchhhhcCch---HHHHHHH
Q 021167 4 AHAWLLSPPCQPYTRQGLQKQSSD---ARAFSFLKILELIPH--------TVKPPHMLFVENVVGFETSD---THAKMIE 69 (316)
Q Consensus 4 ~Dil~ggpPCq~fS~ag~~~~~~d---~r~~L~~~~~~~i~~--------~~~~P~~~~~ENV~~~~~~~---~~~~i~~ 69 (316)
+|+|+||||||+||.||++++.+| +|+.||++++|+|++ + +|++|+||||+|+++++ .|+.|++
T Consensus 126 vDll~ggpPCQ~fS~ag~~~g~~d~~~~r~~L~~~~~rii~~~~~k~~~~~--~Pk~~l~ENV~gl~~~~~~~~~~~i~~ 203 (403)
T 4dkj_A 126 IDIFTYSFPCQDLSVQGLQKGIDKELNTRSGLLWEIERILEEIKNSFSKEE--MPKYLLMENVKNLLSHKNKKNYNTWLK 203 (403)
T ss_dssp CSEEEECCCCTTTCTTSCCCCCCGGGCCSGGGHHHHHHHHHHHHHHSCGGG--SCSEEEEEEEGGGGSHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCHHHhCCCCCCCccccccchhHHHHHHHHHHhhhhhcccc--CCCEEEEecchhhhhhccchHHHHHHH
Confidence 699999999999999999998887 899999999999998 7 89999999999999864 7999999
Q ss_pred HHHcCCCeeeEEEEccCCCCCCCCCcEEEEEEEeCCCCcccccccccccCCCCCcCCCCCccccccCCCCCCcccccCcc
Q 021167 70 ILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLES 149 (316)
Q Consensus 70 ~l~~~GY~v~~~vlna~~yGvPQ~R~R~~iva~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (316)
.|+++||.+.+.+|||++|||||+|+|+|+||++++ +.+|.+.+ ++.+.. . ..+
T Consensus 204 ~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~--f~fP~~~~----~~~~~~-------------~-------~~~ 257 (403)
T 4dkj_A 204 QLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDD--YLEKTGFK----FKELEK-------------V-------KNP 257 (403)
T ss_dssp HHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEEHH--HHHHHCCC----CCCGGG-------------C-------CCC
T ss_pred HHHhCCCeEEEEEecHHHcCCCccceEEEEEEEcCC--CCCCCccc----cccccc-------------c-------ccc
Confidence 999999999999999999999999999999999998 55543221 111000 0 011
Q ss_pred CCchHHhhhhcCCCCCcccc-ccccccccccccccCccccchhhccccccccccCcHHHhhhcCccccccCCCCCccccc
Q 021167 150 CDPVERFLEFSNSGDQVNTE-TGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCF 228 (316)
Q Consensus 150 ~~~l~~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~p~~~~~~~~ 228 (316)
..++.|+|+.... +.+..+ ...+. .... .+ .......+..++ .+
T Consensus 258 ~~~l~dile~~~~-~~y~~~~~~~~~------------~~~~--~~----------~~~~~~~~~~~~----------~~ 302 (403)
T 4dkj_A 258 PKKIKDILVDSSN-YKYLNLNKYETT------------TFRE--TK----------SNIISRPLKNYT----------TF 302 (403)
T ss_dssp CCCGGGGCCCCSC-CCCCCCTTSCCC------------CCEE--CT----------TSBEEEECTTSC----------SC
T ss_pred cccHHHHhccccc-cccchhhhhccc------------cccc--cc----------cchhcccccccc----------cc
Confidence 2347788874321 110000 00000 0000 00 000000000000 01
Q ss_pred ccceeeeecCCCceeeeeccCCCCCCccccCCCcccCCHHHHHHhCCCCC-CcccCC---CCCHHHHHHHhCCcccHHHH
Q 021167 229 TKSYYRYVKGTGSLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPG-DFQFPH---HLSLRQRYALLGNSLSIAVV 304 (316)
Q Consensus 229 ~~~y~R~~~~~~s~~~~~~~~~~~~~~~ihp~~~R~LT~rE~arLqgFPd-~f~f~~---~~s~~~~~~qiGNAVp~~v~ 304 (316)
......+.....++|++++... .....+++.+.|.||+|||+||||||| +|.+.. .+|.+++|+|+||||+|+|+
T Consensus 303 ~~~~~v~~~~~~~~Tlt~~~~~-~~~~~~~~~~~R~ltprE~~rlqGFpd~~~~~~~~~~~~s~~~~y~~~GNsv~v~v~ 381 (403)
T 4dkj_A 303 NSENYVYNINGIGPTLTASGAN-SRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKIL 381 (403)
T ss_dssp GGGSEEEETTSBBCCCCSSSGG-GSCEEEETTEEEECCHHHHHHHTTCCHHHHHHHHHTSCSCHHHHHHHHHTSCCHHHH
T ss_pred ccCcceecCCCcccceecCCCC-ceeEEccCCCcccCCHHHHHHHcCCCHHHhhhhhccCCCCHHHHHhhcCCccCHHHH
Confidence 1111122233345555543210 111123567899999999999999999 799863 24999999999999999999
Q ss_pred HHHHHHHHhhc
Q 021167 305 APLLQYLFAQA 315 (316)
Q Consensus 305 ~~i~~~l~~~~ 315 (316)
++||++|++.+
T Consensus 382 ~~i~~~i~~~l 392 (403)
T 4dkj_A 382 EAIFNTLEFVN 392 (403)
T ss_dssp HHHHHTCCCCC
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 11
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=100.00 E-value=3.7e-48 Score=368.55 Aligned_cols=257 Identities=23% Similarity=0.321 Sum_probs=157.9
Q ss_pred cccEEEeCCCCcHHhhccCCCC--------C-CCcchhhHHHHHHHhhhhcCCCcEEEEcchhhhcCc---hHHHHHHHH
Q 021167 3 GAHAWLLSPPCQPYTRQGLQKQ--------S-SDARAFSFLKILELIPHTVKPPHMLFVENVVGFETS---DTHAKMIEI 70 (316)
Q Consensus 3 ~~Dil~ggpPCq~fS~ag~~~~--------~-~d~r~~L~~~~~~~i~~~~~~P~~~~~ENV~~~~~~---~~~~~i~~~ 70 (316)
++|||+||||||+||.||++++ . +|+|+.||++++++|+.+ +|++|+||||+||+++ .+|+.|++.
T Consensus 169 ~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~--rPk~fvlENV~gl~s~~~g~~f~~i~~~ 246 (482)
T 3me5_A 169 EHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDAR--RPAMFVLENVKNLKSHDKGKTFRIIMQT 246 (482)
T ss_dssp CCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHH--CCSEEEEEEETTTTTGGGGHHHHHHHHH
T ss_pred CCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHc--CCcEEEEeCcHHHhcccCCcHHHHHHHH
Confidence 6899999999999999997542 2 378999999999999999 9999999999999885 489999999
Q ss_pred HHcCCCeee---------EEEEccCCCCCCCCCcEEEEEEEeCCCCcccccccccccCCCCCcCCCCCccccccCCCCCC
Q 021167 71 LANSDYLTQ---------EFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDD 141 (316)
Q Consensus 71 l~~~GY~v~---------~~vlna~~yGvPQ~R~R~~iva~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 141 (316)
|+++||.+. +.+|||++| |||+|+|+|+||+|+++.+.. .|.+|.......
T Consensus 247 L~~lGY~v~~~~~~g~~~~~vlnA~~~-vPQ~R~R~fivg~r~~~~~~~------~F~~~~~~~~~p------------- 306 (482)
T 3me5_A 247 LDELGYDVADAEDNGPDDPKIIDGKHF-LPQHRERIVLVGFRRDLNLKA------DFTLRDISECFP------------- 306 (482)
T ss_dssp HHHTTEEETTTTCCSTTCTTEEEGGGT-SSBCCEEEEEEEEEGGGCCCT------TCCGGGGGGGSC-------------
T ss_pred HhcCCcEEEeccccCcccceeeecccc-CCccceEEEEEEEecCccccc------CcCccccccccC-------------
Confidence 999999996 679999999 999999999999999864321 122221110000
Q ss_pred cccccCccCCchHHhhhhcCCCCCccccccccccccccccccCccccchhhccccccccccCcHHHhhhcCccccccCCC
Q 021167 142 SWDKLLESCDPVERFLEFSNSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPD 221 (316)
Q Consensus 142 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~p~ 221 (316)
...+++.|+|+.... +++.+.. +.+. .+.++ .. . ...+..|..++++.|+
T Consensus 307 ------~~~~~l~diLe~~~~------~ky~l~~--~~~~---------~l~~~---~~---~-~~~~g~gf~~~i~~~~ 356 (482)
T 3me5_A 307 ------AQRVTLAQLLDPMVE------AKYILTP--VLWK---------YLYRY---AK---K-HQARGNGFGYGMVYPN 356 (482)
T ss_dssp ------SSCCCTGGGSCSSCC------GGGBCCH--HHHH---------HHHHH---HH---C-----------CEECTT
T ss_pred ------CCcccHHHHhhcccc------cccccCH--HHHH---------HHHHH---HH---h-hhcccCCcccceecCC
Confidence 001236777764322 1111110 0000 00000 00 0 0011123445666665
Q ss_pred CCcccccccceeeeecCCCceeeeeccC-CCCCCcccc----CCCcccCCHHHHHHhCCCC----CCcccCCCCCHHHHH
Q 021167 222 SKRCCCFTKSYYRYVKGTGSLLATVQPK-NKGKASSLK----EQHLRYFTPREVANLHSFP----GDFQFPHHLSLRQRY 292 (316)
Q Consensus 222 ~~~~~~~~~~y~R~~~~~~s~~~~~~~~-~~~~~~~ih----p~~~R~LT~rE~arLqgFP----d~f~f~~~~s~~~~~ 292 (316)
...+.|.|.. .|+..+....++..... ..+...+.| ....|+||+|||+|||||| ++|.+.+ |.+++|
T Consensus 357 ~~~~~~~Ti~-a~~~k~gs~~~i~~~~~~~~~~~~~~~~~~~~~~~R~lTprE~~rlqgFp~~~~~~~~~~~--s~~~~y 433 (482)
T 3me5_A 357 NPQSVTRTLS-ARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTPRECARLMGFEAPGEAKFRIPV--SDTQAY 433 (482)
T ss_dssp SGGGGTCCBC-CC---CCSSSEECCCCCHHHHHHCTTCTTGGGGCCEECCHHHHHHHHTSSCTTCCCSCCCS--CHHHHH
T ss_pred cccccceeeE-EeeeccCcceeecccccccCCccccccccccCCCcccCCHHHHHHHcCCCCccccceeccC--CHHHHH
Confidence 5444444333 22222322222221100 000001222 3568999999999999999 5777777 999999
Q ss_pred HHhCCcccHHHHHHHHHHHHhh
Q 021167 293 ALLGNSLSIAVVAPLLQYLFAQ 314 (316)
Q Consensus 293 ~qiGNAVp~~v~~~i~~~l~~~ 314 (316)
+|+||||||+|+++||+.|.+.
T Consensus 434 ~q~GNsV~v~v~~~i~~~l~~~ 455 (482)
T 3me5_A 434 RQFGNSVVVPVFAAVAKLLEPK 455 (482)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHcCCccChHHHHHHHHHHHHH
Confidence 9999999999999999999753
No 12
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=100.00 E-value=2.6e-45 Score=329.81 Aligned_cols=202 Identities=18% Similarity=0.254 Sum_probs=140.9
Q ss_pred cccEEEeCCCCcHHhhcc-CCCCCCCcchhhHHHHHHHhhhhcCCCc-------EEEEcchhhhcCchHHHHHHHHHHcC
Q 021167 3 GAHAWLLSPPCQPYTRQG-LQKQSSDARAFSFLKILELIPHTVKPPH-------MLFVENVVGFETSDTHAKMIEILANS 74 (316)
Q Consensus 3 ~~Dil~ggpPCq~fS~ag-~~~~~~d~r~~L~~~~~~~i~~~~~~P~-------~~~~ENV~~~~~~~~~~~i~~~l~~~ 74 (316)
++|+|+||||||+||.|| ++++.+|+|+.||++++|+|+++ +|+ +|+||||+||++.+ ...+.+.|+.
T Consensus 83 ~~Dll~ggpPCQ~fS~ag~~r~g~~d~r~~L~~~~~rii~~~--~P~~~~~~P~~~l~ENV~gl~~~~-~~~~~~~l~~- 158 (295)
T 2qrv_A 83 PFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDA--RPKEGDDRPFFWLFENVVAMGVSD-KRDISRFLES- 158 (295)
T ss_dssp CCSEEEECCCCGGGBTTCTTCCTTTSTTTTHHHHHHHHHHHH--SCCTTCCCCCEEEEEEESSBCHHH-HHHHHHHHTS-
T ss_pred CcCEEEecCCCccccccCccccccccccchhHHHHHHHHHHh--CcccccCCccEEEEEcCcchhhcC-ccHHHHHHhc-
Confidence 589999999999999999 78889999999999999999999 888 99999999998764 2345555543
Q ss_pred CCeeeEEEEccCCCCCCCCCcEEEEEEEeCCCCcccccccccccCCCCCcCCCCCccccccCCCCCCcccccCccCCchH
Q 021167 75 DYLTQEFILSPLQFGVPYSRPRYFCLAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVE 154 (316)
Q Consensus 75 GY~v~~~vlna~~yGvPQ~R~R~~iva~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 154 (316)
.+.+|||++|| ||+|+|+|+ +.+++. .+|.... . .+..++.
T Consensus 159 ----~~~vl~a~~~~-PQ~R~R~~i-~~~~~~------------~~p~~~~----~-----------------~~~~tv~ 199 (295)
T 2qrv_A 159 ----NPVMIDAKEVS-AAHRARYFW-GNLPGM------------NRPLAST----V-----------------NDKLELQ 199 (295)
T ss_dssp ----CCCCEEGGGTS-SBCCEEEEE-ECCTTS------------SSCCCCC----S-----------------SCCCSGG
T ss_pred ----CcEEeecceEC-CccCcEEEE-EEecCc------------cCCCccc----c-----------------cCcccHH
Confidence 46789999996 999999998 655432 1221110 0 0000133
Q ss_pred HhhhhcCCCCCccccccccccccccccccCccccchhhccccccccccCcHHHhhhcCccccccCCCCCcccccccceee
Q 021167 155 RFLEFSNSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYR 234 (316)
Q Consensus 155 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~p~~~~~~~~~~~y~R 234 (316)
|+|+.... ..+ + ...+++..+..
T Consensus 200 d~l~~~~~------------------------------------~~~--------------~-------~~~~i~~~~~~ 222 (295)
T 2qrv_A 200 ECLEHGRI------------------------------------AKF--------------S-------KVRTITTRSNS 222 (295)
T ss_dssp GTSCTTCE------------------------------------ESS--------------S-------SBC--------
T ss_pred HHhcCCcc------------------------------------ccc--------------C-------ccccccCCCce
Confidence 44421000 000 0 00001100001
Q ss_pred eecCCCceeeeeccCCCCCCccccCCCcccCCHHHHHHhCCCCCCcccCCCCCHHHHHHHhCCcccHHHHHHHHHHHHhh
Q 021167 235 YVKGTGSLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFAQ 314 (316)
Q Consensus 235 ~~~~~~s~~~~~~~~~~~~~~~ihp~~~R~LT~rE~arLqgFPd~f~f~~~~s~~~~~~qiGNAVp~~v~~~i~~~l~~~ 314 (316)
+..+.+ .....+|+.+.|.||+||+||||||||+|.|++..|.+++|+||||||||+|+++||++|.+.
T Consensus 223 ~~~g~~-----------~~~~~~~~~~~R~lt~rE~arlqgFPd~~~~~~~~s~~~~~~qiGNaVpv~~~~~i~~~i~~~ 291 (295)
T 2qrv_A 223 IKQGKD-----------QHFPVFMNEKEDILWCTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEY 291 (295)
T ss_dssp -----------------CCSCEEETTEEECCCHHHHHHHHTCCTTTTCCTTCCHHHHHHHHHTSCCHHHHHHHHGGGGGG
T ss_pred ecCCCC-----------CCcccccCCCcCCCCHHHHHHHcCCCHHHeeCCCcCHHHHhccEecCcCHHHHHHHHHHHHHH
Confidence 111100 011235778999999999999999999999999888899999999999999999999999875
Q ss_pred c
Q 021167 315 A 315 (316)
Q Consensus 315 ~ 315 (316)
+
T Consensus 292 l 292 (295)
T 2qrv_A 292 F 292 (295)
T ss_dssp S
T ss_pred h
Confidence 4
No 13
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=99.87 E-value=3.4e-23 Score=188.33 Aligned_cols=87 Identities=8% Similarity=0.064 Sum_probs=72.1
Q ss_pred cccEEEeCCCCcHHhhccCCCCCCCcchhhHHHHHHHhhhhcCCCc-------EEEEcchhhhcCchHHHHHHHHHHcCC
Q 021167 3 GAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPH-------MLFVENVVGFETSDTHAKMIEILANSD 75 (316)
Q Consensus 3 ~~Dil~ggpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~~~P~-------~~~~ENV~~~~~~~~~~~i~~~l~~~G 75 (316)
++|||+||||||+||.|| +|+.||++|+|+|+++ +|+ ||+||||+|+.+. ....+...|+
T Consensus 237 ~~DlliGG~PCQ~FS~A~-------~Rg~Lf~ef~Riv~~~--rPk~~~~~P~~fv~ENV~gL~~~-~~~~i~~~L~--- 303 (386)
T 2pv0_B 237 PFDLVYGATPPLGHTCDR-------PPSWYLFQFHRLLQYA--RPKPGSPGPFFWMFVDNLVLNKE-DLDVASRFLE--- 303 (386)
T ss_dssp CCSEEEEECCCTTTCSCS-------CTHHHHHHHHHHHHHH--SCCSSCCSCCEEEEEECSCSCHH-HHHHHHHHTT---
T ss_pred CCCEEEECCCCCcccccC-------CcchHHHHHHHHHHHh--CCCcccCCCcEEEEEechhhhhc-chHHHHHHHc---
Confidence 589999999999999885 5789999999999999 887 9999999999533 3444555443
Q ss_pred CeeeEEEEccCCCCCCCCCcEEEEEEEeCCC
Q 021167 76 YLTQEFILSPLQFGVPYSRPRYFCLAKRKPL 106 (316)
Q Consensus 76 Y~v~~~vlna~~yGvPQ~R~R~~iva~r~~~ 106 (316)
+.+.||||++||+||+|+| +||.+++.
T Consensus 304 --v~~~VLnA~dyGVPQrRrR--f~g~~~~~ 330 (386)
T 2pv0_B 304 --MEPVTIPDVHGGSLQNAVR--VWSNIPAI 330 (386)
T ss_dssp --SCCCEEECCCSSSCCCEEE--EEECSSSS
T ss_pred --CCeEEEEccccCccccccE--EEEECCCc
Confidence 5678999999999999999 45776654
No 14
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.87 E-value=5.9e-23 Score=174.98 Aligned_cols=87 Identities=8% Similarity=0.059 Sum_probs=66.7
Q ss_pred cccEEEeCCCCcHHhhccCCCCCCCcchhhHHHHHHHhhhhcCCCc-------EEEEcchhhhcCchHHHHHHHHHHcCC
Q 021167 3 GAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPH-------MLFVENVVGFETSDTHAKMIEILANSD 75 (316)
Q Consensus 3 ~~Dil~ggpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~~~P~-------~~~~ENV~~~~~~~~~~~i~~~l~~~G 75 (316)
++|||+||||||+||.+| +|+.||++|+|+|+++ +|+ +|+||||+||.+++ ...+.+.| +
T Consensus 81 ~~DlliGG~PCQ~FS~ag-------~rg~Lf~ef~Riv~~~--rPk~~~~~P~~fv~ENV~gL~~~~-~~~i~~~l-~-- 147 (230)
T 2qrv_B 81 PFDLVYGATPPLGHTCDR-------PPSWYLFQFHRLLQYA--RPKPGSPRPFFWMFVDNLVLNKED-LDVASRFL-E-- 147 (230)
T ss_dssp CCSEEEEECCCTTTSSCS-------CTHHHHHHHHHHHHHH--CCCSSCCSCCEEEEEECSCSCHHH-HHHHHHHH-T--
T ss_pred CCCEEEECCCCCcccccC-------CCchHHHHHHHHHHHH--CcCcccCCCcEEEEeccHHhhhcc-HHHHHHHH-c--
Confidence 589999999999999887 3789999999999999 888 89999999997543 34555555 3
Q ss_pred CeeeEEEEccCCCCCCCCCcEEEEEEEeCCC
Q 021167 76 YLTQEFILSPLQFGVPYSRPRYFCLAKRKPL 106 (316)
Q Consensus 76 Y~v~~~vlna~~yGvPQ~R~R~~iva~r~~~ 106 (316)
+.+.+|||++||+||+| |+|+ +.+.+.
T Consensus 148 --~~~~vLnA~dfgvpQrR-r~f~-g~~~~~ 174 (230)
T 2qrv_B 148 --MEPVTIPDVHGGSLQNA-VRVW-SNIPAI 174 (230)
T ss_dssp --SCCEECCCCCSCC-----CEEE-ECSTTS
T ss_pred --CCcEEEEcccCCcCccc-EEEE-eecCCC
Confidence 35678999999999999 4443 666543
No 15
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=93.62 E-value=0.11 Score=46.61 Aligned_cols=94 Identities=11% Similarity=0.001 Sum_probs=60.6
Q ss_pred cccEEEeCCCCcHHhhccCCCCCCCcchhhHHHHHH-HhhhhcCCCcE-EEEcchhhhc-CchHHHHHHH-HHHcCCCee
Q 021167 3 GAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILE-LIPHTVKPPHM-LFVENVVGFE-TSDTHAKMIE-ILANSDYLT 78 (316)
Q Consensus 3 ~~Dil~ggpPCq~fS~ag~~~~~~d~r~~L~~~~~~-~i~~~~~~P~~-~~~ENV~~~~-~~~~~~~i~~-~l~~~GY~v 78 (316)
..|+|+..|||.+.+..+.. .+- -..+..+++ +.+.+ +|.- +++++..... +...+..++. .+.+.||.+
T Consensus 225 ~fD~Ii~dPP~~~~~~~~~~---~~~-~~~~~~ll~~~~~~L--kpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v 298 (332)
T 2igt_A 225 TYDIILTDPPKFGRGTHGEV---WQL-FDHLPLMLDICREIL--SPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVV 298 (332)
T ss_dssp CBSEEEECCCSEEECTTCCE---EEH-HHHHHHHHHHHHHTB--CTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEE
T ss_pred CceEEEECCccccCCchHHH---HHH-HHHHHHHHHHHHHhc--CcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 47999999999876632210 000 112333443 33455 6754 4788776653 3344554444 667899999
Q ss_pred eEEEEccCCCCCCCC-CcEEEEEEE
Q 021167 79 QEFILSPLQFGVPYS-RPRYFCLAK 102 (316)
Q Consensus 79 ~~~vlna~~yGvPQ~-R~R~~iva~ 102 (316)
....+....+++||. +.|++.+++
T Consensus 299 ~~~e~~~p~~~~~q~~~~r~lp~g~ 323 (332)
T 2igt_A 299 ASGELVIREAGLDGKTPGRVLSTSL 323 (332)
T ss_dssp EEEEEEEECCCSSSCCCCCEEEEEE
T ss_pred EEEEEecccCCcccccCCceeeeEE
Confidence 888888889999999 999887664
No 16
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=57.20 E-value=21 Score=27.78 Aligned_cols=41 Identities=5% Similarity=-0.100 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCeeeEEEEccCCCCCCCCCcEEEEEEEe
Q 021167 63 THAKMIEILANSDYLTQEFILSPLQFGVPYSRPRYFCLAKR 103 (316)
Q Consensus 63 ~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R~R~~iva~r 103 (316)
..+.+.+.|++.|+.+....-+.......+...++++++.+
T Consensus 154 ~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k 194 (195)
T 3cgg_A 154 VFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTK 194 (195)
T ss_dssp CHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEE
T ss_pred CHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEec
Confidence 46788888999999976655454444556677888888765
No 17
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=49.18 E-value=28 Score=31.40 Aligned_cols=80 Identities=16% Similarity=0.051 Sum_probs=45.4
Q ss_pred cccEEEeCCCCcHHhhccCCCCCCCcchhhHHHHHHHhhhhcCCCc-EEEEcchhhhcCchHHHHHH-HHHHcCCCee--
Q 021167 3 GAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPPH-MLFVENVVGFETSDTHAKMI-EILANSDYLT-- 78 (316)
Q Consensus 3 ~~Dil~ggpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~~~P~-~~~~ENV~~~~~~~~~~~i~-~~l~~~GY~v-- 78 (316)
..|+++..||+...|.... .+....+-.-+.+++..+ +|. ++++.+....+..+.|..++ +.+.+.|+.+
T Consensus 293 ~fD~Ii~dpP~~~~~~~~~----~~~~~~~~~~l~~~~~~L--kpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~ 366 (396)
T 3c0k_A 293 KFDVIVMDPPKFVENKSQL----MGACRGYKDINMLAIQLL--NEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQF 366 (396)
T ss_dssp CEEEEEECCSSTTTCSSSS----SCCCTHHHHHHHHHHHTE--EEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCEEEECCCCCCCChhHH----HHHHHHHHHHHHHHHHhc--CCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4799999999876654322 221122222233455566 564 66677766665554444444 4778888654
Q ss_pred eEEEEccCCC
Q 021167 79 QEFILSPLQF 88 (316)
Q Consensus 79 ~~~vlna~~y 88 (316)
......+.||
T Consensus 367 i~~~~~~~d~ 376 (396)
T 3c0k_A 367 IEQFRQAADH 376 (396)
T ss_dssp EEEEECCTTS
T ss_pred EEECCCCCCC
Confidence 3334445555
No 18
>3zth_A STU0660; DNA binding, crispr, CAS; 2.40A {Streptococcus thermophilus}
Probab=36.09 E-value=35 Score=29.96 Aligned_cols=44 Identities=14% Similarity=0.288 Sum_probs=34.9
Q ss_pred hhHHHHHHHhhhhc---CCCcEEEEcchhhhcCchHHHHHHHHHHcC
Q 021167 31 FSFLKILELIPHTV---KPPHMLFVENVVGFETSDTHAKMIEILANS 74 (316)
Q Consensus 31 ~L~~~~~~~i~~~~---~~P~~~~~ENV~~~~~~~~~~~i~~~l~~~ 74 (316)
.++..++.+++++. .+|..+|++|.-.+++.+.|..+++.++++
T Consensus 179 ekl~~fL~mL~~~ls~~t~k~LLV~kNiD~~Ls~~sy~~i~~~~~~l 225 (350)
T 3zth_A 179 DKLSLFLEMLDHLLSQTTEKYLIVLKNIDGFISEESYTIFYRQICHL 225 (350)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEEEESCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEeCHHHhhcHHHHHHHHHHHHHH
Confidence 46666666665554 468999999999999999888888888765
No 19
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=32.11 E-value=21 Score=25.20 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCCeeeE
Q 021167 63 THAKMIEILANSDYLTQE 80 (316)
Q Consensus 63 ~~~~i~~~l~~~GY~v~~ 80 (316)
..+.+++.+++.||++..
T Consensus 92 ~i~ei~kkykd~GykvE~ 109 (111)
T 2jmk_A 92 VIKATAEKFKNKGFKVET 109 (111)
T ss_dssp HHHHHHHHGGGGCCEEEE
T ss_pred HHHHHHHHhhcCCceeec
Confidence 578899999999999864
No 20
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=30.65 E-value=75 Score=26.88 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=40.7
Q ss_pred cccEEEeCCCCcHHhhccCCCCCCCcchhhHHHHHHHhhhhcCCC--cEEEEcchh-hhcCchHHHHHHHHHHcCCCeee
Q 021167 3 GAHAWLLSPPCQPYTRQGLQKQSSDARAFSFLKILELIPHTVKPP--HMLFVENVV-GFETSDTHAKMIEILANSDYLTQ 79 (316)
Q Consensus 3 ~~Dil~ggpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~~~P--~~~~~ENV~-~~~~~~~~~~i~~~l~~~GY~v~ 79 (316)
..|+++..||+.. ..++.++.++ + +| .+++.++++ +......++.+.+.+++.||.+.
T Consensus 192 ~fD~Vi~~~p~~~--------------~~~l~~~~~~---L--kpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~ 252 (278)
T 2frn_A 192 IADRILMGYVVRT--------------HEFIPKALSI---A--KDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp CEEEEEECCCSSG--------------GGGHHHHHHH---E--EEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred CccEEEECCchhH--------------HHHHHHHHHH---C--CCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeE
Confidence 4688888888432 2345555554 4 45 478888886 45555678889999999999875
Q ss_pred E
Q 021167 80 E 80 (316)
Q Consensus 80 ~ 80 (316)
.
T Consensus 253 ~ 253 (278)
T 2frn_A 253 K 253 (278)
T ss_dssp E
T ss_pred E
Confidence 4
No 21
>3qhq_A CSN2, SAG0897 family crispr-associated protein; helicase, transferase; 2.00A {Streptococcus agalactiae} PDB: 3toc_A 3v7f_A
Probab=24.39 E-value=2e+02 Score=23.81 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=40.6
Q ss_pred chhhHHH---HHHHhhhhcCCCcEEEEcchhhhcCchHHHHHHHHHHcCCCeeeEEEE-ccCCCCCCC
Q 021167 29 RAFSFLK---ILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLTQEFIL-SPLQFGVPY 92 (316)
Q Consensus 29 r~~L~~~---~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~i~~~l~~~GY~v~~~vl-na~~yGvPQ 92 (316)
..+++.. ++++..++ .+++.+++=||..+++..-+..+.+.....+..+ -.| +..-+|.+|
T Consensus 142 ~~~~~eki~~~lki~~el-~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~i~v--LlIE~~~~~~~~~ 206 (229)
T 3qhq_A 142 SDTIFEKCFEIIQVYHYL-TKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSV--LFLEPRRLYDLPQ 206 (229)
T ss_dssp CCSHHHHHHHHHHHHHHC-TTCCEEEEESCGGGCCHHHHHHHHHHHHHHCSCE--EEEESSCCTTSSC
T ss_pred CCCHHHHHHHHHHHHHHh-cCCCEEEEEChHHhCCHHHHHHHHHHHHHhCCeE--EEEeccccCCCcc
Confidence 3444544 45555555 4799999999999999988888888777655443 333 334455544
No 22
>2k44_A Hsapbk, K+-channel voltage-sensor paddle domain of calcium-activated potassium channel subunit...; membrane, micelle, solution structure; NMR {Synthetic}
Probab=23.54 E-value=16 Score=19.53 Aligned_cols=9 Identities=22% Similarity=0.290 Sum_probs=6.4
Q ss_pred HHHhCCCCC
Q 021167 270 VANLHSFPG 278 (316)
Q Consensus 270 ~arLqgFPd 278 (316)
|.|||++||
T Consensus 20 ALRlm~~p~ 28 (28)
T 2k44_A 20 ALRLIQFSE 28 (28)
T ss_dssp THHHHSSCC
T ss_pred HHHcccCCC
Confidence 567777775
No 23
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=23.07 E-value=2.2e+02 Score=25.27 Aligned_cols=96 Identities=15% Similarity=0.062 Sum_probs=49.5
Q ss_pred cccEEEeCCCCcHHhhccCCC---------------CCCCcchhhHHHHHHH-hhhhcCCCcE-EEEcchhhhcCchHHH
Q 021167 3 GAHAWLLSPPCQPYTRQGLQK---------------QSSDARAFSFLKILEL-IPHTVKPPHM-LFVENVVGFETSDTHA 65 (316)
Q Consensus 3 ~~Dil~ggpPCq~fS~ag~~~---------------~~~d~r~~L~~~~~~~-i~~~~~~P~~-~~~ENV~~~~~~~~~~ 65 (316)
..|++++-||+-..+..++.. ...+.+..++..|++. .+.+ +|.- +++.--.+++.....+
T Consensus 98 ~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~L--k~~G~~~~i~p~~~l~~~~~~ 175 (421)
T 2ih2_A 98 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLL--KPGGVLVFVVPATWLVLEDFA 175 (421)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHE--EEEEEEEEEEEGGGGTCGGGH
T ss_pred CCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHh--CCCCEEEEEEChHHhcCccHH
Confidence 479999999986554321100 0111223355566653 3444 5632 2332233455555667
Q ss_pred HHHHHHHcCCCeeeEEEEccCCC-CCCCCCcEEEEEEEeC
Q 021167 66 KMIEILANSDYLTQEFILSPLQF-GVPYSRPRYFCLAKRK 104 (316)
Q Consensus 66 ~i~~~l~~~GY~v~~~vlna~~y-GvPQ~R~R~~iva~r~ 104 (316)
.+.+.|.+.|+ .....+. .-| |.+ =.++++++.+.
T Consensus 176 ~lr~~l~~~~~-~~i~~l~-~~F~~~~--~~~~il~~~k~ 211 (421)
T 2ih2_A 176 LLREFLAREGK-TSVYYLG-EVFPQKK--VSAVVIRFQKS 211 (421)
T ss_dssp HHHHHHHHHSE-EEEEEEE-SCSTTCC--CCEEEEEEESS
T ss_pred HHHHHHHhcCC-eEEEECC-CCCCCCC--ccEEEEEEEeC
Confidence 78888887777 4444444 334 222 24555555543
No 24
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=20.40 E-value=2.1e+02 Score=20.09 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=17.3
Q ss_pred hHHHHHHHhhhhcCCCcEEEEcchhhhcCchHHHHHHHHHHcCCCee
Q 021167 32 SFLKILELIPHTVKPPHMLFVENVVGFETSDTHAKMIEILANSDYLT 78 (316)
Q Consensus 32 L~~~~~~~i~~~~~~P~~~~~ENV~~~~~~~~~~~i~~~l~~~GY~v 78 (316)
|-.++-.+.++-. --+++++-|-+.++ ..+++.+..+||.|
T Consensus 38 lkkemkklaeekn-fekiliisndkqll-----kemlelisklgykv 78 (134)
T 2lci_A 38 LKKEMKKLAEEKN-FEKILIISNDKQLL-----KEMLELISKLGYKV 78 (134)
T ss_dssp HHHHHHHHHHCCS-CCCEEEEESCHHHH-----HHHHHHHHHHTCCE
T ss_pred HHHHHHHHHhhcC-cceEEEEcCcHHHH-----HHHHHHHHHhCcee
Confidence 4444444444331 13445554444332 33344444444444
Done!