Query 021168
Match_columns 316
No_of_seqs 151 out of 193
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 08:07:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06410 PB1_UP2 Uncharacterize 100.0 4.2E-42 9E-47 277.7 10.9 95 23-118 1-97 (97)
2 smart00666 PB1 PB1 domain. Pho 99.4 1.8E-12 3.9E-17 97.7 10.2 75 37-118 4-81 (81)
3 PF00564 PB1: PB1 domain; Int 99.1 4.9E-10 1.1E-14 84.4 8.6 76 38-119 5-83 (84)
4 cd05992 PB1 The PB1 domain is 99.0 4.2E-09 9.1E-14 78.8 9.1 74 38-118 4-81 (81)
5 cd06407 PB1_NLP A PB1 domain i 98.7 8.3E-08 1.8E-12 75.9 9.8 71 42-118 7-81 (82)
6 cd06408 PB1_NoxR The PB1 domai 98.4 1.9E-06 4.1E-11 69.7 8.7 72 43-118 10-86 (86)
7 cd06398 PB1_Joka2 The PB1 doma 98.1 3.3E-05 7.2E-10 62.5 9.9 74 39-118 5-87 (91)
8 cd06405 PB1_Mekk2_3 The PB1 do 98.0 2.1E-05 4.6E-10 63.2 7.6 70 43-118 8-77 (79)
9 cd06404 PB1_aPKC PB1 domain is 98.0 4.6E-05 9.9E-10 61.7 9.3 72 42-119 7-82 (83)
10 cd06401 PB1_TFG The PB1 domain 98.0 2.9E-05 6.4E-10 62.5 7.2 53 43-98 8-67 (81)
11 cd06396 PB1_NBR1 The PB1 domai 97.9 0.00012 2.6E-09 58.9 9.0 69 43-118 8-79 (81)
12 cd06397 PB1_UP1 Uncharacterize 97.6 0.00025 5.5E-09 57.5 6.7 59 43-104 8-69 (82)
13 cd06402 PB1_p62 The PB1 domain 97.5 0.0006 1.3E-08 55.4 8.1 64 45-117 15-84 (87)
14 cd06406 PB1_P67 A PB1 domain i 96.9 0.0029 6.2E-08 51.0 6.4 68 38-116 6-76 (80)
15 cd06409 PB1_MUG70 The MUG70 pr 96.8 0.012 2.5E-07 47.9 8.7 70 43-118 9-84 (86)
16 cd06403 PB1_Par6 The PB1 domai 96.7 0.0086 1.9E-07 48.5 7.7 67 41-117 6-77 (80)
17 cd06399 PB1_P40 The PB1 domain 95.9 0.031 6.7E-07 46.4 6.8 61 43-106 12-77 (92)
18 cd06411 PB1_p51 The PB1 domain 94.4 0.15 3.2E-06 41.2 6.3 54 46-100 8-64 (78)
19 cd06395 PB1_Map2k5 PB1 domain 86.8 1.6 3.4E-05 36.3 5.1 50 53-105 21-72 (91)
20 KOG0695 Serine/threonine prote 84.1 5.4 0.00012 41.1 8.6 84 18-123 14-101 (593)
21 cd01812 BAG1_N Ubiquitin-like 77.7 5.4 0.00012 29.0 4.6 38 39-77 5-45 (71)
22 PF14560 Ubiquitin_2: Ubiquiti 73.1 8.6 0.00019 29.8 4.9 29 49-77 18-49 (87)
23 cd01803 Ubiquitin Ubiquitin. U 71.8 7.9 0.00017 28.3 4.2 38 39-76 5-45 (76)
24 cd00196 UBQ Ubiquitin-like pro 69.3 15 0.00032 23.0 4.7 39 40-78 3-44 (69)
25 cd01807 GDX_N ubiquitin-like d 68.5 10 0.00022 28.4 4.3 39 39-77 5-46 (74)
26 cd01794 DC_UbP_C dendritic cel 67.4 8.5 0.00018 29.2 3.7 32 38-69 2-33 (70)
27 cd01809 Scythe_N Ubiquitin-lik 67.2 13 0.00029 26.8 4.6 38 39-76 5-45 (72)
28 cd01806 Nedd8 Nebb8-like ubiq 67.2 14 0.00031 26.9 4.8 42 40-83 6-50 (76)
29 cd01796 DDI1_N DNA damage indu 66.0 11 0.00023 28.4 4.0 35 43-77 8-45 (71)
30 PTZ00044 ubiquitin; Provisiona 62.3 16 0.00034 27.1 4.3 38 40-77 6-46 (76)
31 cd01799 Hoil1_N Ubiquitin-like 60.5 14 0.00031 28.6 3.9 35 42-77 10-47 (75)
32 cd01800 SF3a120_C Ubiquitin-li 55.9 19 0.00042 27.2 3.9 36 42-77 5-43 (76)
33 cd01810 ISG15_repeat2 ISG15 ub 55.3 23 0.0005 26.5 4.1 39 39-77 3-44 (74)
34 cd01805 RAD23_N Ubiquitin-like 51.3 32 0.0007 25.4 4.4 32 39-70 5-36 (77)
35 cd01769 UBL Ubiquitin-like dom 50.6 37 0.00081 23.7 4.4 38 40-77 3-43 (69)
36 cd01789 Alp11_N Ubiquitin-like 50.6 35 0.00077 26.7 4.7 28 49-76 17-47 (84)
37 cd01798 parkin_N amino-termina 49.3 33 0.00072 25.2 4.1 38 40-77 4-44 (70)
38 TIGR03649 ergot_EASG ergot alk 49.1 15 0.00032 32.9 2.6 62 44-106 189-251 (285)
39 PF11976 Rad60-SLD: Ubiquitin- 48.9 19 0.00042 26.3 2.8 43 39-83 5-51 (72)
40 smart00213 UBQ Ubiquitin homol 45.4 41 0.0009 23.2 3.9 37 40-77 6-45 (64)
41 KOG3206 Alpha-tubulin folding 44.0 25 0.00055 33.6 3.4 44 51-95 19-63 (234)
42 KOG0672 Halotolerance protein 42.0 59 0.0013 30.9 5.5 66 34-102 16-90 (218)
43 cd04894 ACT_ACR-like_1 ACT dom 41.7 43 0.00094 26.9 3.9 42 23-68 21-68 (69)
44 cd01802 AN1_N ubiquitin-like d 41.3 50 0.0011 27.1 4.4 39 39-77 32-73 (103)
45 PF03902 Gal4_dimer: Gal4-like 38.2 4.6 0.0001 31.2 -1.9 30 74-103 19-48 (57)
46 cd01793 Fubi Fubi ubiquitin-li 38.1 73 0.0016 23.8 4.5 35 43-77 7-44 (74)
47 PF04599 Pox_G5: Poxvirus G5 p 35.8 28 0.00061 35.9 2.5 32 88-119 42-73 (425)
48 cd01804 midnolin_N Ubiquitin-l 34.8 97 0.0021 23.7 4.8 28 42-69 9-36 (78)
49 cd01763 Sumo Small ubiquitin-r 32.5 91 0.002 24.4 4.4 43 39-83 16-61 (87)
50 PF14107 DUF4280: Domain of un 31.8 32 0.00069 27.7 1.8 23 14-37 84-106 (108)
51 PF00240 ubiquitin: Ubiquitin 31.4 1E+02 0.0022 22.1 4.3 35 42-76 3-40 (69)
52 PF14259 RRM_6: RNA recognitio 30.6 64 0.0014 22.8 3.0 52 50-104 5-61 (70)
53 cd01813 UBP_N UBP ubiquitin pr 29.3 79 0.0017 24.2 3.5 28 43-70 8-35 (74)
54 PF09822 ABC_transp_aux: ABC-t 27.3 1.4E+02 0.003 27.4 5.3 60 55-119 10-69 (271)
55 cd02974 AhpF_NTD_N Alkyl hydro 25.7 2.1E+02 0.0045 23.2 5.5 46 59-116 5-53 (94)
56 PHA03065 Hypothetical protein; 25.4 53 0.0012 34.1 2.5 33 87-119 43-75 (438)
57 COG0621 MiaB 2-methylthioadeni 25.2 2.1E+02 0.0045 29.6 6.6 54 56-123 281-339 (437)
58 KOG4307 RNA binding protein RB 23.0 6E+02 0.013 28.8 9.8 39 80-121 38-77 (944)
59 cd01792 ISG15_repeat1 ISG15 ub 21.5 1.6E+02 0.0034 22.5 3.9 29 41-69 9-37 (80)
60 KOG2094 Predicted DNA damage i 21.4 2.6E+02 0.0056 29.4 6.4 85 26-121 335-441 (490)
61 cd01791 Ubl5 UBL5 ubiquitin-li 21.2 2.3E+02 0.0049 21.8 4.7 34 44-77 11-47 (73)
62 PF00106 adh_short: short chai 21.0 1.8E+02 0.0039 23.3 4.3 63 44-121 24-89 (167)
63 PRK09717 stationary phase grow 20.8 84 0.0018 29.2 2.6 96 18-121 41-148 (179)
64 PF02519 Auxin_inducible: Auxi 20.4 1.5E+02 0.0033 24.5 3.8 50 35-95 38-91 (100)
No 1
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=100.00 E-value=4.2e-42 Score=277.75 Aligned_cols=95 Identities=64% Similarity=1.039 Sum_probs=91.3
Q ss_pred EeeeCCeeeeCCCCCceeeecCceeEEEecCCCCHHHHHHHHHhhcCCc--eEEEEecCCCCCCceeeccChHHHHHHHH
Q 021168 23 LCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDGD--IVLKYQLIPEDLDSLVSVRNDEDVKHMME 100 (316)
Q Consensus 23 lCSyGGrIlPRp~DGkLrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~~--~~LKYQLPgEDLDaLISVssDEDL~nMme 100 (316)
||||||||+||+.||+|+|+|||||||+|+|+|+|+||++||+++++.. ++||||||+||||+||||++||||+|||+
T Consensus 1 ~cs~GG~i~pr~~dg~l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeDl~~M~~ 80 (97)
T cd06410 1 LCSYGGRILPRPPDGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDEDLKNMME 80 (97)
T ss_pred CcccCCEEeCcCCCCCEEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999854 69999999999999999999999999999
Q ss_pred HHHhcCCCCCCcEEEEEc
Q 021168 101 EYDRHGSEGTPRLRAFLF 118 (316)
Q Consensus 101 EYdrl~~~~s~RLRvFLF 118 (316)
||+++ ..+++|||||||
T Consensus 81 e~~~~-~~~~~rirvflf 97 (97)
T cd06410 81 EYDRL-SGGSARLRVFLF 97 (97)
T ss_pred hhccc-cCCCceEEEEEC
Confidence 99999 557899999998
No 2
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=99.42 E-value=1.8e-12 Score=97.72 Aligned_cols=75 Identities=47% Similarity=0.751 Sum_probs=67.0
Q ss_pred CceeeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcE
Q 021168 37 GNLKYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRL 113 (316)
Q Consensus 37 GkLrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RL 113 (316)
.|++| ||++|++.|+++++|.+|+.|+.+.++. .+.|||+ +||-| +|++++|+||..||+.+.+.. ...|
T Consensus 4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~--Dedgd-~v~l~sd~Dl~~a~~~~~~~~---~~~l 76 (81)
T smart00666 4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ--DEDGD-LVSLTSDEDLEEAIEEYDSLG---SKKL 76 (81)
T ss_pred EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE--CCCCC-EEEecCHHHHHHHHHHHHHcC---CceE
Confidence 46788 9999999999999999999999999974 7999999 67756 999999999999999998765 3679
Q ss_pred EEEEc
Q 021168 114 RAFLF 118 (316)
Q Consensus 114 RvFLF 118 (316)
||++|
T Consensus 77 ~l~v~ 81 (81)
T smart00666 77 RLHVF 81 (81)
T ss_pred EEEeC
Confidence 99886
No 3
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=99.10 E-value=4.9e-10 Score=84.39 Aligned_cols=76 Identities=30% Similarity=0.584 Sum_probs=62.8
Q ss_pred ceeeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEE
Q 021168 38 NLKYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLR 114 (316)
Q Consensus 38 kLrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLR 114 (316)
|++|.|+..|++.++++++|.+|+.++++.++. .+.|+|. +|| ..+|+|++|+||..|++++.+.. ..+||
T Consensus 5 K~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~--D~d-gD~V~i~sd~Dl~~a~~~~~~~~---~~~lr 78 (84)
T PF00564_consen 5 KVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK--DED-GDLVTISSDEDLQEAIEQAKESG---SKTLR 78 (84)
T ss_dssp EEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE--ETT-SSEEEESSHHHHHHHHHHHHHCT---TSCEE
T ss_pred EEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee--CCC-CCEEEeCCHHHHHHHHHHHHhcC---CCcEE
Confidence 345555444569999999999999999999984 7889998 455 48999999999999999999873 45999
Q ss_pred EEEcc
Q 021168 115 AFLFP 119 (316)
Q Consensus 115 vFLFp 119 (316)
||+..
T Consensus 79 l~v~~ 83 (84)
T PF00564_consen 79 LFVQD 83 (84)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99863
No 4
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=98.97 E-value=4.2e-09 Score=78.84 Aligned_cols=74 Identities=39% Similarity=0.612 Sum_probs=60.2
Q ss_pred ceeeecCceeEEEec-CCCCHHHHHHHHHhhcCC---ceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcE
Q 021168 38 NLKYVGGETRVVAVP-REINFSELMKKLSTIDDG---DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRL 113 (316)
Q Consensus 38 kLrYVGGeTRIVsV~-R~isF~eL~~KLs~l~~~---~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RL 113 (316)
|++|- |++|.+.|+ ++++|.+|+++|.+.++. .+.|||.- || ..+|+|++|+||+.|++.+.+. +..+|
T Consensus 4 K~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D--~e-~d~v~l~sd~Dl~~a~~~~~~~---~~~~l 76 (81)
T cd05992 4 KVKYG-GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD--ED-GDLVTISSDEDLEEAIEEARRS---GSKKL 76 (81)
T ss_pred EEEec-CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC--CC-CCEEEeCCHHHHHHHHHHHhhc---CCccE
Confidence 45555 567777777 999999999999999984 57777774 55 3789999999999999999873 35789
Q ss_pred EEEEc
Q 021168 114 RAFLF 118 (316)
Q Consensus 114 RvFLF 118 (316)
|+|++
T Consensus 77 ~l~v~ 81 (81)
T cd05992 77 RLFVF 81 (81)
T ss_pred EEEeC
Confidence 99875
No 5
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=98.75 E-value=8.3e-08 Score=75.92 Aligned_cols=71 Identities=23% Similarity=0.407 Sum_probs=62.2
Q ss_pred ecCceeEEEecCCCCHHHHHHHHHhhcC----CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021168 42 VGGETRVVAVPREINFSELMKKLSTIDD----GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFL 117 (316)
Q Consensus 42 VGGeTRIVsV~R~isF~eL~~KLs~l~~----~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFL 117 (316)
.|||++.+.|+.+++|.+|+.++++.|+ +.++|||. .|| ...|+++||+||+.-++-|.... ..++|+|+
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~--Dde-gd~v~ltsd~DL~eai~i~~~~~---~~~v~l~v 80 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL--DDD-EEWVLLTCDADLEECIDVYRSSG---SHTIRLLV 80 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE--CCC-CCeEEeecHHHHHHHHHHHHHCC---CCeEEEEe
Confidence 3889999999999999999999999997 36999998 555 88999999999999888887653 58999987
Q ss_pred c
Q 021168 118 F 118 (316)
Q Consensus 118 F 118 (316)
-
T Consensus 81 ~ 81 (82)
T cd06407 81 H 81 (82)
T ss_pred e
Confidence 3
No 6
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=98.39 E-value=1.9e-06 Score=69.74 Aligned_cols=72 Identities=10% Similarity=0.312 Sum_probs=60.9
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcC--CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCC---CCCCcEEEEE
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDD--GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGS---EGTPRLRAFL 117 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~--~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~---~~s~RLRvFL 117 (316)
+||+|+|.|+.+|+|.+|..|+.+.|+ ..++|||+ +| ...|+|++++||+--|.-.....+ ..-+|+-+++
T Consensus 10 ~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKyk--DE--GD~iti~sq~DLd~Ai~~a~~~~~~~~~~~~~~e~w~ 85 (86)
T cd06408 10 QDDTRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMK--DD--GDMITMGDQDDLDMAIDTARSEARKQGSDMGKLEIWV 85 (86)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEE--cC--CCCccccCHHHHHHHHHHHHHHHHhhcccccceeeec
Confidence 789999999999999999999999998 68999999 34 789999999999999988765332 2237888876
Q ss_pred c
Q 021168 118 F 118 (316)
Q Consensus 118 F 118 (316)
+
T Consensus 86 ~ 86 (86)
T cd06408 86 M 86 (86)
T ss_pred C
Confidence 4
No 7
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=98.10 E-value=3.3e-05 Score=62.47 Aligned_cols=74 Identities=26% Similarity=0.457 Sum_probs=58.5
Q ss_pred eeeecCceeEEEecC-----CCCHHHHHHHHHhhcC----CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCC
Q 021168 39 LKYVGGETRVVAVPR-----EINFSELMKKLSTIDD----GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEG 109 (316)
Q Consensus 39 LrYVGGeTRIVsV~R-----~isF~eL~~KLs~l~~----~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~ 109 (316)
..| ||++|-+.++. +++|.+|..|+++.++ ..+.|||. .|| ..+|.++||+||+--|+...+...
T Consensus 5 v~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~--Ded-gd~V~l~~D~DL~~a~~~~~~~~~-- 78 (91)
T cd06398 5 VKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT--DED-GDVVTLVDDNDLTDAIQYFCSGSR-- 78 (91)
T ss_pred EEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE--CCC-CCEEEEccHHHHHHHHHHHhccCC--
Confidence 445 88999999995 7999999999999986 37899998 443 579999999999988887544332
Q ss_pred CCcEEEEEc
Q 021168 110 TPRLRAFLF 118 (316)
Q Consensus 110 s~RLRvFLF 118 (316)
..-||+++-
T Consensus 79 ~~~lrl~v~ 87 (91)
T cd06398 79 LNPLRIDVT 87 (91)
T ss_pred CceEEEEEE
Confidence 456777653
No 8
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=98.04 E-value=2.1e-05 Score=63.15 Aligned_cols=70 Identities=31% Similarity=0.522 Sum_probs=59.9
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCCceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEc
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLF 118 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLF 118 (316)
-||.|||.++|.+.|.||..|+.+.||+.+.+-|-. .| -||-+.|-|||+.-||-.|+.... .-||+.|-
T Consensus 8 ~gEKRIi~f~RPvkf~dl~~kv~~afGq~mdl~ytn-~e---L~iPl~~Q~DLDkAie~ld~s~~~--ksLRilL~ 77 (79)
T cd06405 8 NGEKRIIQFPRPVKFKDLQQKVTTAFGQPMDLHYTN-NE---LLIPLKNQEDLDRAIELLDRSPHM--KSLRILLS 77 (79)
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCCeeeEEEec-cc---EEEeccCHHHHHHHHHHHccCccc--cceeEeEe
Confidence 489999999999999999999999999999999985 32 799999999999999999984332 34666653
No 9
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=98.02 E-value=4.6e-05 Score=61.71 Aligned_cols=72 Identities=15% Similarity=0.369 Sum_probs=60.3
Q ss_pred ecCceeEEEecCCCCHHHHHHHHHhhcC----CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021168 42 VGGETRVVAVPREINFSELMKKLSTIDD----GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFL 117 (316)
Q Consensus 42 VGGeTRIVsV~R~isF~eL~~KLs~l~~----~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFL 117 (316)
-+|+-+|..++.+++|.+|.+|+.++|. +++++||- +|| .-+|+|++|++|+.-+.-|..... .-|-+-+
T Consensus 7 y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~--DEE-GDp~tiSS~~EL~EA~rl~~~n~~---~~l~ihv 80 (83)
T cd06404 7 YNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWI--DEE-GDPCTISSQMELEEAFRLYELNKD---SELNIHV 80 (83)
T ss_pred ecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEE--CCC-CCceeecCHHHHHHHHHHHHhcCc---ccEEEEe
Confidence 4788899999999999999999999996 58999998 444 458999999999988888876543 4677777
Q ss_pred cc
Q 021168 118 FP 119 (316)
Q Consensus 118 Fp 119 (316)
||
T Consensus 81 fp 82 (83)
T cd06404 81 FP 82 (83)
T ss_pred cC
Confidence 76
No 10
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=97.96 E-value=2.9e-05 Score=62.55 Aligned_cols=53 Identities=23% Similarity=0.536 Sum_probs=45.5
Q ss_pred cCceeEEEecC-CCCHHHHHHHHHhhcC------CceEEEEecCCCCCCceeeccChHHHHHH
Q 021168 43 GGETRVVAVPR-EINFSELMKKLSTIDD------GDIVLKYQLIPEDLDSLVSVRNDEDVKHM 98 (316)
Q Consensus 43 GGeTRIVsV~R-~isF~eL~~KLs~l~~------~~~~LKYQLPgEDLDaLISVssDEDL~nM 98 (316)
|||.|.+.++. +++|.+|+..+..+|. .++.|||.= || ..||+|++++||.--
T Consensus 8 g~DiR~~~~~~~~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD--~d-GDlVTIts~~dL~~A 67 (81)
T cd06401 8 GDDIRRIPIHNEDITYDELLLMMQRVFRGKLGSSDDVLIKYKD--ED-GDLITIFDSSDLSFA 67 (81)
T ss_pred CCeEEEEeccCccccHHHHHHHHHHHhccccCCcccEEEEEEC--CC-CCEEEeccHHHHHHH
Confidence 89999999998 5899999999988775 379999984 33 569999999999765
No 11
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=97.86 E-value=0.00012 Score=58.88 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=57.3
Q ss_pred cCceeEEEecC--CCCHHHHHHHHHhhcC-CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEc
Q 021168 43 GGETRVVAVPR--EINFSELMKKLSTIDD-GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLF 118 (316)
Q Consensus 43 GGeTRIVsV~R--~isF~eL~~KLs~l~~-~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLF 118 (316)
|||++.+.++. +++|.+|.+.+++.|+ ..+.|||- +|| .--|+|+||.||+.-++-|.+ ++..||+|+.
T Consensus 8 ~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~~f~lKYl--Dde-~e~v~lssd~eLeE~~rl~~~----~~~~l~~~v~ 79 (81)
T cd06396 8 NGESQSFLVSDSENTTWASVEAMVKVSFGLNDIQIKYV--DEE-NEEVSVNSQGEYEEALKSAVR----QGNLLQMNVY 79 (81)
T ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHHhCCCcceeEEE--cCC-CCEEEEEchhhHHHHHHHHHh----CCCEEEEEEe
Confidence 68889999999 8899999999999998 57999997 444 678999999999766666554 3468898874
No 12
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=97.56 E-value=0.00025 Score=57.47 Aligned_cols=59 Identities=17% Similarity=0.345 Sum_probs=48.9
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEecCCCCCCceeeccChHHHHHHHHHHHh
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDR 104 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdr 104 (316)
+|+||=+++++.-+|.+|.+||..+++- ++.|+|- .|| .-+|++++|+||+..+-...+
T Consensus 8 ~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi--DeD-~D~ITlssd~eL~d~~~~~~~ 69 (82)
T cd06397 8 LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI--DND-NDEITLSSNKELQDFYRLSHR 69 (82)
T ss_pred CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE--cCC-CCEEEecchHHHHHHHHhccc
Confidence 5677777799999999999999999982 6899997 454 369999999999987765443
No 13
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=97.50 E-value=0.0006 Score=55.36 Aligned_cols=64 Identities=19% Similarity=0.401 Sum_probs=51.3
Q ss_pred ceeEEEecCC--CCHHHHHHHHHhhcC----CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021168 45 ETRVVAVPRE--INFSELMKKLSTIDD----GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFL 117 (316)
Q Consensus 45 eTRIVsV~R~--isF~eL~~KLs~l~~----~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFL 117 (316)
|-|-++++.. ++|.+|+.++.++|. ..++|||. +|| .-||+|+|||||.--+..-. .+-+|||+
T Consensus 15 EIRRf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~--Dee-GDlvtIssdeEL~~A~~~~~------~~~~RlyI 84 (87)
T cd06402 15 EIRRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWK--DEE-GDLVAFSSDEELVMALGSLN------DDTFRIYI 84 (87)
T ss_pred ceEEEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEE--CCC-CCEEeecCHHHHHHHHHcCC------CCcEEEEE
Confidence 5677888654 689999999999984 48999998 444 45999999999987776543 36789887
No 14
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=96.92 E-value=0.0029 Score=51.02 Aligned_cols=68 Identities=19% Similarity=0.335 Sum_probs=52.8
Q ss_pred ceeeecCceeEEEecCCCCHHHHHHHHHhhcC---CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEE
Q 021168 38 NLKYVGGETRVVAVPREINFSELMKKLSTIDD---GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLR 114 (316)
Q Consensus 38 kLrYVGGeTRIVsV~R~isF~eL~~KLs~l~~---~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLR 114 (316)
|++|-+ |-+|.|+++++|++|..||++.+. ..+.|.|.= |+=..++.+ +|+||+.++.-=. ..+|.
T Consensus 6 KV~f~~--tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd--e~s~~~v~l-~d~dle~aws~~~------~~~lT 74 (80)
T cd06406 6 KVHFKY--TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS--EASGEDVIL-SDTNMEDVWSQAK------DGCLT 74 (80)
T ss_pred EEEEEE--EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc--CCCCCccCc-ChHHHHHHHHhhc------CCeEE
Confidence 466776 999999999999999999998775 467889984 555567888 8999998876432 35555
Q ss_pred EE
Q 021168 115 AF 116 (316)
Q Consensus 115 vF 116 (316)
++
T Consensus 75 Lw 76 (80)
T cd06406 75 LW 76 (80)
T ss_pred EE
Confidence 54
No 15
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=96.76 E-value=0.012 Score=47.88 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=56.8
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCC------ceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEE
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDG------DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAF 116 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~------~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvF 116 (316)
.|.++=+.+.-+.++.+|++.+++-++. .+.|||- .|-.-.|++|||.||..-|+-+.... ..+||+|
T Consensus 9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl---DDEgD~VllT~D~DL~e~v~iar~~g---~~~v~L~ 82 (86)
T cd06409 9 KGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV---DDEGDIVLITSDSDLVAAVLVARSAG---LKKLDLH 82 (86)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE---cCCCCEEEEeccchHHHHHHHHHHcC---CCEEEEE
Confidence 5777778888899999999999998873 4678996 34467999999999999998877654 4789988
Q ss_pred Ec
Q 021168 117 LF 118 (316)
Q Consensus 117 LF 118 (316)
|-
T Consensus 83 v~ 84 (86)
T cd06409 83 LH 84 (86)
T ss_pred Ee
Confidence 74
No 16
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=96.73 E-value=0.0086 Score=48.53 Aligned_cols=67 Identities=24% Similarity=0.425 Sum_probs=55.2
Q ss_pred eecCceeEEEecCC--CCHHHHHHHHHhhcC---CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEE
Q 021168 41 YVGGETRVVAVPRE--INFSELMKKLSTIDD---GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRA 115 (316)
Q Consensus 41 YVGGeTRIVsV~R~--isF~eL~~KLs~l~~---~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRv 115 (316)
+-++|+|=.+++|+ .+|.||.+.|..+.. .++.|+|.=|..| |+.|+|||.+..-+. ...+-|||
T Consensus 6 kfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D~~gD---LLPInNDdNf~kAls-------sa~plLRl 75 (80)
T cd06403 6 KFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYTDPHGD---LLPINNDDNFLKALS-------SANPLLRI 75 (80)
T ss_pred ccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEeCCCCC---EecccCcHHHHHHHH-------cCCCceEE
Confidence 45889999999998 899999999998874 5899999987544 899999998776554 12578999
Q ss_pred EE
Q 021168 116 FL 117 (316)
Q Consensus 116 FL 117 (316)
|+
T Consensus 76 ~i 77 (80)
T cd06403 76 FI 77 (80)
T ss_pred EE
Confidence 87
No 17
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=95.89 E-value=0.031 Score=46.38 Aligned_cols=61 Identities=25% Similarity=0.299 Sum_probs=52.3
Q ss_pred cCceeEEEecCCC----CHHHHHHHHHhhcC-CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcC
Q 021168 43 GGETRVVAVPREI----NFSELMKKLSTIDD-GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHG 106 (316)
Q Consensus 43 GGeTRIVsV~R~i----sF~eL~~KLs~l~~-~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~ 106 (316)
|=+||=|.|..++ +|.||...++..|. .+++|.|+=+..| ||-+-+|||++=||+|-..+.
T Consensus 12 ~~~~rdi~vee~l~~~P~~kdLl~lmr~~f~~~dIaLNYrD~EGD---LIRllddeDv~LMV~~~r~~~ 77 (92)
T cd06399 12 ISTIRDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGD---LIRLLSDEDVALMVRQSRGLP 77 (92)
T ss_pred CccccceEeecccccCccHHHHHHHHHHHhchhheeeeeecCCCC---EEEEcchhhHHHHHHHHhcCC
Confidence 5567889998887 59999999999997 5899999976655 899999999999999987664
No 18
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=94.41 E-value=0.15 Score=41.21 Aligned_cols=54 Identities=24% Similarity=0.272 Sum_probs=45.7
Q ss_pred eeEEEecCCCCHHHHHHHHHhhcC---CceEEEEecCCCCCCceeeccChHHHHHHHH
Q 021168 46 TRVVAVPREINFSELMKKLSTIDD---GDIVLKYQLIPEDLDSLVSVRNDEDVKHMME 100 (316)
Q Consensus 46 TRIVsV~R~isF~eL~~KLs~l~~---~~~~LKYQLPgEDLDaLISVssDEDL~nMme 100 (316)
|-+|.|+|..++++|..+|++.+. ....|-|.-|+++ ..||-++.+||++.+..
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~-~~~v~l~~e~~me~aW~ 64 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGED-GHWVPISGEESLQRAWQ 64 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCC-ccEeecCcchHHHHHHH
Confidence 778999999999999999999887 4688999987754 37788998999887754
No 19
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=86.78 E-value=1.6 Score=36.31 Aligned_cols=50 Identities=22% Similarity=0.436 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHhhcCC--ceEEEEecCCCCCCceeeccChHHHHHHHHHHHhc
Q 021168 53 REINFSELMKKLSTIDDG--DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRH 105 (316)
Q Consensus 53 R~isF~eL~~KLs~l~~~--~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl 105 (316)
..++|.|+..-++..+.. ...+.|. +||- -=|+|.+||+++.||.-|..+
T Consensus 21 ~~L~F~DvL~~I~~vlp~aT~tAFeYE--DE~g-DRITVRSDeEm~AMlsyy~~~ 72 (91)
T cd06395 21 PQLLFRDVLDVIGQVLPEATTTAFEYE--DEDG-DRITVRSDEEMKAMLSYYCST 72 (91)
T ss_pred ccccHHHHHHHHHHhcccccccceeec--cccC-CeeEecchHHHHHHHHHHHHH
Confidence 568999999999998863 3457775 5664 469999999999999998764
No 20
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=84.11 E-value=5.4 Score=41.11 Aligned_cols=84 Identities=24% Similarity=0.367 Sum_probs=63.5
Q ss_pred ccEEEEeeeCCeeeeCCCCCceeeecCceeEEEecCCCCHHHHHHHHHhhcC----CceEEEEecCCCCCCceeeccChH
Q 021168 18 SRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDD----GDIVLKYQLIPEDLDSLVSVRNDE 93 (316)
Q Consensus 18 ~kVKllCSyGGrIlPRp~DGkLrYVGGeTRIVsV~R~isF~eL~~KLs~l~~----~~~~LKYQLPgEDLDaLISVssDE 93 (316)
.+||+---|+|.| -|..++..++|.+|...+..+|. +++++|+- +||-| =|+|++.-
T Consensus 14 ~~vrlka~y~g~i----------------~i~~~~p~~~~e~~~~~vrd~c~~h~~q~~t~kwi--deegd-p~tv~sqm 74 (593)
T KOG0695|consen 14 GRVRLKAHYGGDI----------------FITSVDPATTFEELCEEVRDMCRLHQQQPLTLKWI--DEEGD-PCTVSSQM 74 (593)
T ss_pred ccEEEEEeecCcE----------------EEEeccCcccHHHHHHHHHHHHHHhhcCCceeEee--cCCCC-cceechhh
Confidence 3677766666555 57889999999999999999996 58999996 56644 58999988
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEEccCCCc
Q 021168 94 DVKHMMEEYDRHGSEGTPRLRAFLFPSTPV 123 (316)
Q Consensus 94 DL~nMmeEYdrl~~~~s~RLRvFLFp~~p~ 123 (316)
+|+.-+.-|.. .+..-|-+-+||.+|.
T Consensus 75 eleea~r~~~~---~~d~el~ihvf~~~pe 101 (593)
T KOG0695|consen 75 ELEEAFRLARQ---CRDEELIIHVFPSTPE 101 (593)
T ss_pred hHHHHHHHHHh---ccccceEEEEccCCCC
Confidence 87665554442 2347888999998875
No 21
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=77.73 E-value=5.4 Score=28.96 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=31.2
Q ss_pred eeeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 39 LKYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 39 LrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
+++. |++.-|.|+.+.+..+|++++++.++- ...|.|.
T Consensus 5 vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 45 (71)
T cd01812 5 VKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK 45 (71)
T ss_pred EEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC
Confidence 4564 888889999999999999999999873 4567665
No 22
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=73.05 E-value=8.6 Score=29.81 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=25.3
Q ss_pred EEecCCCCHHHHHHHHHhhcC---CceEEEEe
Q 021168 49 VAVPREINFSELMKKLSTIDD---GDIVLKYQ 77 (316)
Q Consensus 49 VsV~R~isF~eL~~KLs~l~~---~~~~LKYQ 77 (316)
+.++.++++.||+.||..++| ..+.|.|.
T Consensus 18 kr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~ 49 (87)
T PF14560_consen 18 KRFPKSITVSELKQKLEKLTGIPPSDMRLQLK 49 (87)
T ss_dssp EEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCcccEEEEEE
Confidence 688999999999999999998 46777775
No 23
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=71.75 E-value=7.9 Score=28.27 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=31.1
Q ss_pred eeeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 39 LKYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 39 LrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
++..+|++..|.|+.+.+..+|+.++++..+. ...|.|
T Consensus 5 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~ 45 (76)
T cd01803 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_pred EEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEE
Confidence 34557889999999999999999999998873 355665
No 24
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=69.28 E-value=15 Score=23.02 Aligned_cols=39 Identities=23% Similarity=0.185 Sum_probs=30.8
Q ss_pred eeecCceeEEEecCCCCHHHHHHHHHhhcC---CceEEEEec
Q 021168 40 KYVGGETRVVAVPREINFSELMKKLSTIDD---GDIVLKYQL 78 (316)
Q Consensus 40 rYVGGeTRIVsV~R~isF~eL~~KLs~l~~---~~~~LKYQL 78 (316)
++-+|.+..+.+....++.+|++++.+.++ ..+.|-+.-
T Consensus 3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~ 44 (69)
T cd00196 3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNG 44 (69)
T ss_pred EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECC
Confidence 344899999999999999999999999875 345555543
No 25
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=68.50 E-value=10 Score=28.37 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=32.1
Q ss_pred eeeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 39 LKYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 39 LrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
.+..+|++..|.|+.+.+..+|++++++..+- ...|-|.
T Consensus 5 vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~ 46 (74)
T cd01807 5 VKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFK 46 (74)
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 46678999999999999999999999998773 3455554
No 26
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=67.38 E-value=8.5 Score=29.25 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=29.2
Q ss_pred ceeeecCceeEEEecCCCCHHHHHHHHHhhcC
Q 021168 38 NLKYVGGETRVVAVPREINFSELMKKLSTIDD 69 (316)
Q Consensus 38 kLrYVGGeTRIVsV~R~isF~eL~~KLs~l~~ 69 (316)
|++..+|++..|.|+.+.+..+|++++++..+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~g 33 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEG 33 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhC
Confidence 46778999999999999999999999998876
No 27
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=67.19 E-value=13 Score=26.75 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=31.4
Q ss_pred eeeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 39 LKYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 39 LrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
.+...|++..+.|+.+.+..+|++++++..+. ...|-|
T Consensus 5 vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 45 (72)
T cd01809 5 VKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY 45 (72)
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 35567888999999999999999999998873 456666
No 28
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=67.17 E-value=14 Score=26.90 Aligned_cols=42 Identities=10% Similarity=0.169 Sum_probs=32.1
Q ss_pred eeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEecCCCCC
Q 021168 40 KYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQLIPEDL 83 (316)
Q Consensus 40 rYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQLPgEDL 83 (316)
+-.+|++-.+.|+.+.+..+|++++.+..+. ...|-|. +..|
T Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~--g~~L 50 (76)
T cd01806 6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS--GKQM 50 (76)
T ss_pred EeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEEC--CeEc
Confidence 3346888889999999999999999998873 4556554 5544
No 29
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=66.02 E-value=11 Score=28.43 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=30.0
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
+|++..|.|+.+.+..+|+.++++..+- ...|-|.
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~ 45 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYN 45 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 8999999999999999999999998873 3556664
No 30
>PTZ00044 ubiquitin; Provisional
Probab=62.25 E-value=16 Score=27.09 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=31.5
Q ss_pred eeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 40 KYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 40 rYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
+-..|++..+.|+.+.+..+|++++++..+. ...|-|.
T Consensus 6 k~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (76)
T PTZ00044 6 KTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYS 46 (76)
T ss_pred EeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 4567999999999999999999999999873 3556664
No 31
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=60.51 E-value=14 Score=28.56 Aligned_cols=35 Identities=11% Similarity=-0.126 Sum_probs=29.8
Q ss_pred ecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 42 VGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 42 VGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
.+|.|..|.|+.+.+..+|+.||.+..+- ...| |.
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~ 47 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VI 47 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-Ec
Confidence 36889999999999999999999999884 3567 54
No 32
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=55.90 E-value=19 Score=27.25 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=30.3
Q ss_pred ecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 42 VGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 42 VGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
.+|++..|.|+.+.+..+|+++|.+..+. ...|.|.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~ 43 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYE 43 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 47899999999999999999999998873 3556664
No 33
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=55.26 E-value=23 Score=26.55 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=31.6
Q ss_pred eeeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 39 LKYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 39 LrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
.+...|++..|.|+.+.+..+|++++++..+- ...|-|.
T Consensus 3 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 44 (74)
T cd01810 3 VRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFE 44 (74)
T ss_pred EECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 35678999999999999999999999988763 3455554
No 34
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=51.30 E-value=32 Score=25.41 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=28.3
Q ss_pred eeeecCceeEEEecCCCCHHHHHHHHHhhcCC
Q 021168 39 LKYVGGETRVVAVPREINFSELMKKLSTIDDG 70 (316)
Q Consensus 39 LrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~ 70 (316)
++..+|++..|.|+.+.+..+|++++.+..+.
T Consensus 5 vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i 36 (77)
T cd01805 5 FKTLKQQTFPIEVDPDDTVAELKEKIEEEKGC 36 (77)
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHhhCC
Confidence 46778999999999999999999999988763
No 35
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=50.64 E-value=37 Score=23.70 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=29.2
Q ss_pred eeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 40 KYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 40 rYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
+...|.+-.+.++.+.+..+|+.++++.++. .+.|.|.
T Consensus 3 ~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~ 43 (69)
T cd01769 3 KTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYA 43 (69)
T ss_pred EccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 3445777788999999999999999998873 3556553
No 36
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=50.57 E-value=35 Score=26.69 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.2
Q ss_pred EEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 49 VAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 49 VsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
..++.+++..+|+.||..++|. .+.|-|
T Consensus 17 kr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l 47 (84)
T cd01789 17 KKYSRGLTIAELKKKLELVVGTPASSMRLQL 47 (84)
T ss_pred EecCCCCcHHHHHHHHHHHHCCCccceEEEE
Confidence 4589999999999999999983 566654
No 37
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=49.29 E-value=33 Score=25.25 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=31.3
Q ss_pred eeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 40 KYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 40 rYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
+-.+|++..|.|+.+.+..+|++++++..+. ...|-|.
T Consensus 4 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~ 44 (70)
T cd01798 4 RTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFA 44 (70)
T ss_pred EcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 5568999999999999999999999998773 3455554
No 38
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=49.09 E-value=15 Score=32.89 Aligned_cols=62 Identities=24% Similarity=0.309 Sum_probs=44.1
Q ss_pred CceeEEEecCCCCHHHHHHHHHhhcCCceEEEEecCCCCC-CceeeccChHHHHHHHHHHHhcC
Q 021168 44 GETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDL-DSLVSVRNDEDVKHMMEEYDRHG 106 (316)
Q Consensus 44 GeTRIVsV~R~isF~eL~~KLs~l~~~~~~LKYQLPgEDL-DaLISVssDEDL~nMmeEYdrl~ 106 (316)
|.+.++.-+..+++.|+.+.+++.+|..+... ++|.|++ +.|..---.+|+.+|+.++.+..
T Consensus 189 ~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 251 (285)
T TIGR03649 189 NTDYVVLGPELLTYDDVAEILSRVLGRKITHV-KLTEEELAQRLQSFGMPEDLARMLASLDTAV 251 (285)
T ss_pred CCeEEeeCCccCCHHHHHHHHHHHhCCceEEE-eCCHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45667777889999999999999999876443 3555553 34444445688888888876554
No 39
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=48.89 E-value=19 Score=26.33 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=33.3
Q ss_pred eeeecCceeEEEecCCCCHHHHHHHHHhhcCC----ceEEEEecCCCCC
Q 021168 39 LKYVGGETRVVAVPREINFSELMKKLSTIDDG----DIVLKYQLIPEDL 83 (316)
Q Consensus 39 LrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~----~~~LKYQLPgEDL 83 (316)
|+-.+|+.--+.|.++.+|..|+.+.++..+- .+.|.|. |+.|
T Consensus 5 v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fd--G~~L 51 (72)
T PF11976_consen 5 VRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFD--GKRL 51 (72)
T ss_dssp EEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEET--TEEE
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEEC--CEEc
Confidence 55667888889999999999999999988762 4566664 5443
No 40
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=45.39 E-value=41 Score=23.20 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=28.0
Q ss_pred eeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 40 KYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 40 rYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
+..+ .+..+.|+.+.+..+|++++++.++. ...|.|.
T Consensus 6 k~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~ 45 (64)
T smart00213 6 KTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYK 45 (64)
T ss_pred EECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 4445 47789999999999999999998874 2445443
No 41
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=43.97 E-value=25 Score=33.65 Aligned_cols=44 Identities=20% Similarity=0.370 Sum_probs=36.4
Q ss_pred ecCCCCHHHHHHHHHhhcCCc-eEEEEecCCCCCCceeeccChHHH
Q 021168 51 VPREINFSELMKKLSTIDDGD-IVLKYQLIPEDLDSLVSVRNDEDV 95 (316)
Q Consensus 51 V~R~isF~eL~~KLs~l~~~~-~~LKYQLPgEDLDaLISVssDEDL 95 (316)
.++++++++|+.||.-++|.. =+.+-||=..| |.++++-+|||-
T Consensus 19 ~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~-d~~~~~lsn~d~ 63 (234)
T KOG3206|consen 19 LSNSLTLAQFKDKLELLTGTEAESMELELYDGD-DKKVSALSNEDA 63 (234)
T ss_pred cCCcCcHHHHHhhhhhhhCCCccceEEEEEcCC-CceeeeccCCcc
Confidence 578899999999999999954 36777886655 999999998873
No 42
>KOG0672 consensus Halotolerance protein HAL3 (contains flavoprotein domain) [Inorganic ion transport and metabolism; Cell cycle control, cell division, chromosome partitioning]
Probab=41.99 E-value=59 Score=30.93 Aligned_cols=66 Identities=32% Similarity=0.350 Sum_probs=49.3
Q ss_pred CCCCceeeecCceeEEEecCCCCHHHHHHHHHhhcCC-ceEEEEe--------cCCCCCCceeeccChHHHHHHHHHH
Q 021168 34 AVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDG-DIVLKYQ--------LIPEDLDSLVSVRNDEDVKHMMEEY 102 (316)
Q Consensus 34 p~DGkLrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~-~~~LKYQ--------LPgEDLDaLISVssDEDL~nMmeEY 102 (316)
..|||+.-.=|-|==|+| |++..|++||.+++|. .++|+-- +-.|.|...|.+-+|+|.+.|..+-
T Consensus 16 ~~d~K~hvL~gaTGSvA~---iK~~~li~kL~ei~G~dki~iqvvvT~~a~~f~~~~~l~~~v~~~~d~DeW~~W~~r 90 (218)
T KOG0672|consen 16 QDDGKFHVLLGATGSVAV---IKLPLLIKKLEEIYGRDKISIQVVVTKSATHFLEKLKLNKHVQLYTDEDEWKMWKSR 90 (218)
T ss_pred CCCCceeEEEEeccccce---eehHHHHHHHHHhcCCcceeEEEEEechHHHHHhhcccccceeeecChHHhhhhhhc
Confidence 377887766555555554 7899999999999994 3444432 3367899999999999999887763
No 43
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.75 E-value=43 Score=26.85 Aligned_cols=42 Identities=24% Similarity=0.364 Sum_probs=30.5
Q ss_pred EeeeCCeeeeC--CCCCceeeecCceeEEEecCC----CCHHHHHHHHHhhc
Q 021168 23 LCSHGGKILPR--AVDGNLKYVGGETRVVAVPRE----INFSELMKKLSTID 68 (316)
Q Consensus 23 lCSyGGrIlPR--p~DGkLrYVGGeTRIVsV~R~----isF~eL~~KLs~l~ 68 (316)
+--||=.|.-. ..||+++||= +-.|+|. +.|.-|+.||.++|
T Consensus 21 il~fGl~i~rgd~sTDGkWCyiv----~wVv~~~~~~~~rW~lLK~RL~~~C 68 (69)
T cd04894 21 ILEFGLNITRGDDSTDGRWCYIV----FWVVPRPPSIKVRWDLLKNRLMSAC 68 (69)
T ss_pred HHHhceEEEecccccCCcEEEEE----EEEecCCCCCcccHHHHHHHHHhcC
Confidence 33467666643 3799999983 3345555 78999999999987
No 44
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=41.31 E-value=50 Score=27.10 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=32.3
Q ss_pred eeeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 39 LKYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 39 LrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
++-.+|++..|.|+.+.+-.+|++|+++..+. ...|-|.
T Consensus 32 Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~ 73 (103)
T cd01802 32 IETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWN 73 (103)
T ss_pred EEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEEC
Confidence 46668999999999999999999999998763 3556664
No 45
>PF03902 Gal4_dimer: Gal4-like dimerisation domain; InterPro: IPR005600 The DNA binding domain (residues 1 to 147) of the yeast transcriptional activator GAL4 exists in solution in dimeric form, with the region responsible for dimerisation somewhere between residues 74 and 147. Experimental studies confirmed that the 'hydrophobic region' of the protein (residues 54-97, which contains a larger proportion of alpha-helix), is essential for dimerisation []. ; PDB: 1HBW_B 1D66_A 3COQ_A.
Probab=38.20 E-value=4.6 Score=31.21 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=25.1
Q ss_pred EEEecCCCCCCceeeccChHHHHHHHHHHH
Q 021168 74 LKYQLIPEDLDSLVSVRNDEDVKHMMEEYD 103 (316)
Q Consensus 74 LKYQLPgEDLDaLISVssDEDL~nMmeEYd 103 (316)
|++-+|++|+|.|+--.++.||+.|.+...
T Consensus 19 l~~lfP~~did~lL~~~~~~~l~~il~~l~ 48 (57)
T PF03902_consen 19 LRELFPGEDIDDLLNDRDASDLKPILKKLF 48 (57)
T ss_dssp HCCCSSSSHHHHHHHHHSCHHHHHHHHHH-
T ss_pred HHHHCCCcCHHHHHHcccHHHHHHHHHHhc
Confidence 566789999999999999999999988654
No 46
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=38.10 E-value=73 Score=23.82 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=28.8
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
+++|..+.|+.+.+..+|++++++..+- ...|-|.
T Consensus 7 ~~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~ 44 (74)
T cd01793 7 AQNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLA 44 (74)
T ss_pred CCCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEEC
Confidence 4578999999999999999999998762 4566665
No 47
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses.
Probab=35.76 E-value=28 Score=35.92 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=25.3
Q ss_pred eccChHHHHHHHHHHHhcCCCCCCcEEEEEcc
Q 021168 88 SVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFP 119 (316)
Q Consensus 88 SVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp 119 (316)
||++++||.++++||-..-....+|+-||+=.
T Consensus 42 sv~s~~eL~~~~~~~i~~w~~~~~~VtlFvDR 73 (425)
T PF04599_consen 42 SVNSLDELRNSFEEYIQQWIKNNGKVTLFVDR 73 (425)
T ss_pred hhCCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Confidence 79999999999999987653346777777643
No 48
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=34.75 E-value=97 Score=23.73 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=24.7
Q ss_pred ecCceeEEEecCCCCHHHHHHHHHhhcC
Q 021168 42 VGGETRVVAVPREINFSELMKKLSTIDD 69 (316)
Q Consensus 42 VGGeTRIVsV~R~isF~eL~~KLs~l~~ 69 (316)
..|.+..|.|+.+.+..||++++++..+
T Consensus 9 ~~G~~~~l~v~~~~TV~~LK~~I~~~~~ 36 (78)
T cd01804 9 TTGTRFDLSVPPDETVEGLKKRISQRLK 36 (78)
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHHhC
Confidence 3577788999999999999999998876
No 49
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=32.48 E-value=91 Score=24.36 Aligned_cols=43 Identities=12% Similarity=0.252 Sum_probs=33.3
Q ss_pred eeeecCceeEEEecCCCCHHHHHHHHHhhcC---CceEEEEecCCCCC
Q 021168 39 LKYVGGETRVVAVPREINFSELMKKLSTIDD---GDIVLKYQLIPEDL 83 (316)
Q Consensus 39 LrYVGGeTRIVsV~R~isF~eL~~KLs~l~~---~~~~LKYQLPgEDL 83 (316)
++..-|.+..+.|.++.++..|+.+.++..+ ..+.|-|. |+.|
T Consensus 16 v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~--G~~L 61 (87)
T cd01763 16 VKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFD--GQRI 61 (87)
T ss_pred EECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEEC--CeEC
Confidence 3445678888999999999999999999877 35667775 5444
No 50
>PF14107 DUF4280: Domain of unknown function (DUF4280)
Probab=31.81 E-value=32 Score=27.74 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=16.4
Q ss_pred CCCCccEEEEeeeCCeeeeCCCCC
Q 021168 14 NSPRSRVKFLCSHGGKILPRAVDG 37 (316)
Q Consensus 14 ~~p~~kVKllCSyGGrIlPRp~DG 37 (316)
.+-..+=+++|.|||.|..- .+|
T Consensus 84 ~~L~~~S~~~C~~gG~I~i~-~~G 106 (108)
T PF14107_consen 84 PALTEDSKLTCAYGGIISII-DSG 106 (108)
T ss_pred eccccCeEEeccCCCEEEEE-eCC
Confidence 34455678999999998764 444
No 51
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=31.38 E-value=1e+02 Score=22.15 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=29.0
Q ss_pred ecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 42 VGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 42 VGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
..|.+..|.|+.+.+..+|+.++++..+. ...|-|
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~ 40 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY 40 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeee
Confidence 46889999999999999999999998873 344544
No 52
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=30.57 E-value=64 Score=22.83 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=36.1
Q ss_pred EecCCCCHHHHHHHHHhhcCCceEEEEecCCCC-----CCceeeccChHHHHHHHHHHHh
Q 021168 50 AVPREINFSELMKKLSTIDDGDIVLKYQLIPED-----LDSLVSVRNDEDVKHMMEEYDR 104 (316)
Q Consensus 50 sV~R~isF~eL~~KLs~l~~~~~~LKYQLPgED-----LDaLISVssDEDL~nMmeEYdr 104 (316)
-||.+++-.+|+.-++.. + . ..++.+.... -.++|...+-||.++.++.++.
T Consensus 5 nlp~~~~~~~l~~~f~~~-g-~-v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~ 61 (70)
T PF14259_consen 5 NLPPSTTEEDLRNFFSRF-G-P-VEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNG 61 (70)
T ss_dssp SSTTT--HHHHHHHCTTS-S-B-EEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHhc-C-C-cceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCC
Confidence 478888888888776664 3 2 2344444331 4699999999999999999873
No 53
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=29.27 E-value=79 Score=24.22 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=25.0
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCC
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDG 70 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~ 70 (316)
+|++.-|.|+.+.+..+|+++|.++.+-
T Consensus 8 ~g~~~~v~v~~~~Tv~~lK~~i~~~tgv 35 (74)
T cd01813 8 GGQEYSVTTLSEDTVLDLKQFIKTLTGV 35 (74)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC
Confidence 6778889999999999999999998873
No 54
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=27.34 E-value=1.4e+02 Score=27.37 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHhhcCCceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEcc
Q 021168 55 INFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFP 119 (316)
Q Consensus 55 isF~eL~~KLs~l~~~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp 119 (316)
-|+++-..++-+-...++.|.+.+.. +|+.-. -.-.++++.|++||.+.. +++|++=..-
T Consensus 10 ysLS~~T~~~L~~L~~pV~i~~~~s~-~l~~~~-~~~~~~v~~lL~~y~~~s---~g~i~v~~iD 69 (271)
T PF09822_consen 10 YSLSDQTKKVLKSLDEPVTITVYFSR-ELPPEL-SPLRKQVRDLLDEYARYS---PGKIKVEFID 69 (271)
T ss_pred ccCCHHHHHHHHhCCCCEEEEEEECC-Ccchhh-hHHHHHHHHHHHHHHHhC---CCceEEEEEC
Confidence 46667777777767789999999966 555511 234578899999999875 3577775444
No 55
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=25.74 E-value=2.1e+02 Score=23.24 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=33.2
Q ss_pred HHHHHHHhhcC---CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEE
Q 021168 59 ELMKKLSTIDD---GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAF 116 (316)
Q Consensus 59 eL~~KLs~l~~---~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvF 116 (316)
++++.|.+++. .+++|+.++-+. ..-++++.|++|.-.+. .||++=
T Consensus 5 ~~~~qL~~~f~~l~~pV~l~~f~~~~--------~~~~e~~~ll~e~a~lS----dkI~~~ 53 (94)
T cd02974 5 NLKQQLKAYLERLENPVELVASLDDS--------EKSAELLELLEEIASLS----DKITLE 53 (94)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCCC--------cchHHHHHHHHHHHHhC----CceEEE
Confidence 45666666654 689999998542 45588999999998875 467664
No 56
>PHA03065 Hypothetical protein; Provisional
Probab=25.37 E-value=53 Score=34.12 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=26.2
Q ss_pred eeccChHHHHHHHHHHHhcCCCCCCcEEEEEcc
Q 021168 87 VSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFP 119 (316)
Q Consensus 87 ISVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp 119 (316)
-||++.+||.++++||-..-....+|+-||+=.
T Consensus 43 ysv~~~~eL~~~~~~~iq~w~~~~gkVtlFvDR 75 (438)
T PHA03065 43 YSVNNLDELRSTFEEYVQQWVKKAGKVTLFVDR 75 (438)
T ss_pred hhhCCHHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 379999999999999987653356788888743
No 57
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.18 E-value=2.1e+02 Score=29.64 Aligned_cols=54 Identities=22% Similarity=0.442 Sum_probs=41.6
Q ss_pred CHHHHHHHHHhhcC-----CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEccCCCc
Q 021168 56 NFSELMKKLSTIDD-----GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPSTPV 123 (316)
Q Consensus 56 sF~eL~~KLs~l~~-----~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp~~p~ 123 (316)
.|.+++.||.+.+. .++.+=| ||| +|||.++.++...+.. ..++-+|.|+..|-
T Consensus 281 ~~~~~i~k~R~~~Pd~~i~tDiIVGF--PgE---------TeedFe~tl~lv~e~~---fd~~~~F~YSpRpG 339 (437)
T COG0621 281 EYLEIIEKLRAARPDIAISTDIIVGF--PGE---------TEEDFEETLDLVEEVR---FDRLHVFKYSPRPG 339 (437)
T ss_pred HHHHHHHHHHHhCCCceEeccEEEEC--CCC---------CHHHHHHHHHHHHHhC---CCEEeeeecCCCCC
Confidence 36677888887775 3555544 887 4999999999998876 57999999998764
No 58
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=23.02 E-value=6e+02 Score=28.80 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=27.8
Q ss_pred CCCCCceeeccChHHHHHHHHHH-HhcCCCCCCcEEEEEccCC
Q 021168 80 PEDLDSLVSVRNDEDVKHMMEEY-DRHGSEGTPRLRAFLFPST 121 (316)
Q Consensus 80 gEDLDaLISVssDEDL~nMmeEY-drl~~~~s~RLRvFLFp~~ 121 (316)
+|.=||.|-.++|||-+.-|-.- ..+. -.++||||-+..
T Consensus 38 Ge~GeaFI~FsTDeDARlaM~kdr~~i~---g~~VrLlLSSks 77 (944)
T KOG4307|consen 38 GEEGEAFIGFSTDEDARLAMTKDRLMIH---GAEVRLLLSSKS 77 (944)
T ss_pred ccccceEEEecccchhhhhhhhccccee---cceEEEEeccHH
Confidence 56668999999999988654332 2222 379999997753
No 59
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=21.52 E-value=1.6e+02 Score=22.46 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.3
Q ss_pred eecCceeEEEecCCCCHHHHHHHHHhhcC
Q 021168 41 YVGGETRVVAVPREINFSELMKKLSTIDD 69 (316)
Q Consensus 41 YVGGeTRIVsV~R~isF~eL~~KLs~l~~ 69 (316)
-..|++-.|.|+.+.+-.+|+.++++.++
T Consensus 9 ~~~G~~~~~~v~~~~TV~~lK~~I~~~~~ 37 (80)
T cd01792 9 MLGGNEFLVSLRDSMTVSELKQQIAQKIG 37 (80)
T ss_pred eCCCCEEEEEcCCCCcHHHHHHHHHHHhC
Confidence 34588888899999999999999998876
No 60
>KOG2094 consensus Predicted DNA damage inducible protein [Replication, recombination and repair]
Probab=21.41 E-value=2.6e+02 Score=29.36 Aligned_cols=85 Identities=20% Similarity=0.274 Sum_probs=50.8
Q ss_pred eCCeeeeCCCCCceeeecCceeEEEecCCCC----HHHHHHHHHhhc-------------CCceEEEEecCCCCCCc---
Q 021168 26 HGGKILPRAVDGNLKYVGGETRVVAVPREIN----FSELMKKLSTID-------------DGDIVLKYQLIPEDLDS--- 85 (316)
Q Consensus 26 yGGrIlPRp~DGkLrYVGGeTRIVsV~R~is----F~eL~~KLs~l~-------------~~~~~LKYQLPgEDLDa--- 85 (316)
+||+|+++ | |+.+-|+|.|..+ ++.|-.|+.++| +..++|||.+-.=+.-+
T Consensus 335 ~g~t~~~~--~-------~eRKsis~ErTFs~~sd~~il~~k~qel~~~lsedlqK~glv~rtvtiKlK~ssFev~Tr~~ 405 (490)
T KOG2094|consen 335 LGTTILDE--D-------GERKSISSERTFSSTSDPSILYSKLQELCQMLSEDLQKEGLVGRTVTIKLKTSSFEVHTRQK 405 (490)
T ss_pred CCCCcCcc--c-------cccccccceeeecccCCHHHHHHHHHHHHHHHHHHHHhcCcccceEEEEEeccceeeeeccC
Confidence 56788875 4 4466777777653 555555555544 24799999985433211
Q ss_pred ee--eccChHHHHHHHHHHHhcCCCCCCcEEEEEccCC
Q 021168 86 LV--SVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPST 121 (316)
Q Consensus 86 LI--SVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp~~ 121 (316)
-| =|.+.||+..---|.-+.+- +.+||+.=...+
T Consensus 406 t~s~vv~S~edi~k~aleLLk~e~--~~~iRLlGvR~s 441 (490)
T KOG2094|consen 406 TISQVVHSEEDILKPALELLKQEY--PMTIRLLGVRAS 441 (490)
T ss_pred chhhhhccHHHHHHHHHHHHHhhc--CceEeeeeeeHh
Confidence 01 25677888776666554443 567777654443
No 61
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=21.17 E-value=2.3e+02 Score=21.83 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=27.7
Q ss_pred CceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 44 GETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 44 GeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
|.+..+.|+.+.+..+|+.++++..+. ...|-|.
T Consensus 11 Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~ 47 (73)
T cd01791 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW 47 (73)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeC
Confidence 777788999999999999999988763 3556665
No 62
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=20.99 E-value=1.8e+02 Score=23.32 Aligned_cols=63 Identities=16% Similarity=0.261 Sum_probs=40.9
Q ss_pred CceeEEEecCC---CCHHHHHHHHHhhcCCceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEccC
Q 021168 44 GETRVVAVPRE---INFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPS 120 (316)
Q Consensus 44 GeTRIVsV~R~---isF~eL~~KLs~l~~~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp~ 120 (316)
|..+||.+.|+ ....++..++.+.- ..+.+-- .++++.|+++.++++-... ..+|.+++.-.
T Consensus 24 g~~~v~~~~r~~~~~~~~~l~~~l~~~~---~~~~~~~--------~D~~~~~~~~~~~~~~~~~----~~~ld~li~~a 88 (167)
T PF00106_consen 24 GARVVILTSRSEDSEGAQELIQELKAPG---AKITFIE--------CDLSDPESIRALIEEVIKR----FGPLDILINNA 88 (167)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHHHHHTT---SEEEEEE--------SETTSHHHHHHHHHHHHHH----HSSESEEEEEC
T ss_pred CceEEEEeeecccccccccccccccccc---ccccccc--------ccccccccccccccccccc----ccccccccccc
Confidence 55678888888 55666666666332 1121111 2378899999999998833 25788888765
Q ss_pred C
Q 021168 121 T 121 (316)
Q Consensus 121 ~ 121 (316)
.
T Consensus 89 g 89 (167)
T PF00106_consen 89 G 89 (167)
T ss_dssp S
T ss_pred c
Confidence 4
No 63
>PRK09717 stationary phase growth adaptation protein; Provisional
Probab=20.84 E-value=84 Score=29.20 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=56.8
Q ss_pred ccEEEEeeeCCeeeeCCCC-------Cceeee-cCceeEEEecCCC-CHHHHHHHHHhhcCCceEEEEecCCCCCCceee
Q 021168 18 SRVKFLCSHGGKILPRAVD-------GNLKYV-GGETRVVAVPREI-NFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVS 88 (316)
Q Consensus 18 ~kVKllCSyGGrIlPRp~D-------GkLrYV-GGeTRIVsV~R~i-sF~eL~~KLs~l~~~~~~LKYQLPgEDLDaLIS 88 (316)
..+|+.++||..-..+..+ ..|-|. +.|+|+..-.|=- |-.-|..-+.+|-...+ |+=+. +-=..|+
T Consensus 41 ~~y~~~V~fs~HCFT~~~~~~~~~~~~~l~y~~~re~R~fc~eRY~lS~~~Lp~iv~~L~~~k~---y~T~~-~~fl~i~ 116 (179)
T PRK09717 41 LEYRFWVTYSLHCFTKDYEHQTNEEKQSLMYHAPKESRPFCQHRYNLARTHLKRTILALPESNV---IHAGY-GSYAVIE 116 (179)
T ss_pred cEEEEEEEEeceeeecCCccccCCCCccceeecCCcceeecHHHHHHHHHHHHHHHHhccccce---EEcCC-CCEEEEE
Confidence 4699999999998887544 338999 8889999988852 21122222333222222 23344 3345666
Q ss_pred ccChHHHHHHHHHH---HhcCCCCCCcEEEEEccCC
Q 021168 89 VRNDEDVKHMMEEY---DRHGSEGTPRLRAFLFPST 121 (316)
Q Consensus 89 VssDEDL~nMmeEY---drl~~~~s~RLRvFLFp~~ 121 (316)
|.+|. .-.+.| .++..++. +||||+=++-
T Consensus 117 v~~~~---G~~~~Y~V~f~~~r~~r-~L~l~V~SAY 148 (179)
T PRK09717 117 VDLDG---GDKAFYFVAFRAFREKK-KLRLHVTSAY 148 (179)
T ss_pred EeCCC---CCcceEEEEEEeeccCC-cEEEEEeecc
Confidence 66643 334444 34555444 7998887654
No 64
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=20.40 E-value=1.5e+02 Score=24.50 Aligned_cols=50 Identities=26% Similarity=0.255 Sum_probs=34.9
Q ss_pred CCCceeeecCceeEEEecCCC----CHHHHHHHHHhhcCCceEEEEecCCCCCCceeeccChHHH
Q 021168 35 VDGNLKYVGGETRVVAVPREI----NFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDV 95 (316)
Q Consensus 35 ~DGkLrYVGGeTRIVsV~R~i----sF~eL~~KLs~l~~~~~~LKYQLPgEDLDaLISVssDEDL 95 (316)
.+---=|||-+.|-..|+-.. -|.+|..+-.+-+|.+ -+--|.|-||.++
T Consensus 38 ~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~-----------~~G~l~iPC~~~~ 91 (100)
T PF02519_consen 38 KGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFD-----------QDGPLTIPCDVVL 91 (100)
T ss_pred CCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcC-----------CCCcEEeeCCHHH
Confidence 334467999988888888753 5889998888877632 1334677777664
Done!