Query 021168
Match_columns 316
No_of_seqs 151 out of 193
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 13:45:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu1_A Mitogen-activated prote 99.5 2.7E-14 9.4E-19 117.0 10.8 75 42-122 15-89 (103)
2 1vd2_A Protein kinase C, IOTA 98.9 1.3E-08 4.5E-13 81.0 9.8 70 44-119 15-88 (89)
3 1q1o_A Cell division control p 98.2 7.5E-06 2.6E-10 66.5 9.2 69 44-118 22-98 (98)
4 2jrh_A Mitogen-activated prote 98.1 1.8E-05 6.1E-10 64.2 10.0 73 43-121 12-84 (94)
5 1pqs_A Cell division control p 98.1 6.4E-06 2.2E-10 64.0 6.8 68 45-118 2-77 (77)
6 2c60_A Human mitogen-activated 98.0 2.6E-05 8.9E-10 64.7 9.2 71 43-119 39-109 (111)
7 2npt_B Mitogen-activated prote 98.0 2.7E-05 9.1E-10 63.8 8.7 71 43-119 28-98 (100)
8 2ktr_A Sequestosome-1; autopha 98.0 3.4E-05 1.2E-09 64.4 9.1 93 6-117 7-114 (117)
9 2kkc_A Sequestosome-1; P62, PB 97.9 3.5E-05 1.2E-09 62.6 7.9 67 42-117 18-99 (102)
10 2bkf_A Zinc-finger protein NBR 97.3 0.0013 4.4E-08 52.7 8.8 69 43-118 14-85 (87)
11 1oey_A P67-PHOX, neutrophil cy 97.3 0.00043 1.5E-08 54.6 5.8 69 39-118 10-81 (83)
12 1wj6_A KIAA0049 protein, RSGI 97.1 0.0054 1.9E-07 50.3 11.1 70 44-120 23-95 (101)
13 1wmh_B Partitioning defective- 96.9 0.0045 1.5E-07 49.3 8.7 67 41-117 12-83 (86)
14 1oey_J P40-PHOX, neutrophil cy 96.6 0.0064 2.2E-07 50.4 7.7 70 43-121 17-91 (107)
15 1ip9_A BEM1 protein; ubiquitin 96.1 0.039 1.3E-06 44.1 9.2 55 44-101 21-76 (85)
16 2npt_A Dual specificity mitoge 88.5 1.4 4.9E-05 36.2 7.2 50 53-105 35-86 (106)
17 1v86_A DNA segment, CHR 7, way 82.3 4.6 0.00016 30.7 7.0 41 14-70 12-52 (95)
18 2kzr_A Ubiquitin thioesterase 73.8 3.3 0.00011 30.7 3.8 44 39-83 5-52 (86)
19 3a9j_A Ubiquitin; protein comp 71.4 6.2 0.00021 27.2 4.6 37 40-76 6-45 (76)
20 2dzi_A Ubiquitin-like protein 66.0 11 0.00039 26.4 5.1 34 43-76 16-52 (81)
21 1ndd_A NEDD8, protein (ubiquit 65.8 8.5 0.00029 26.5 4.3 36 41-76 7-45 (76)
22 2bwf_A Ubiquitin-like protein 64.6 11 0.00038 26.2 4.8 34 43-76 12-48 (77)
23 1hbw_A Regulatory protein GAL4 64.5 1.2 4E-05 33.4 -0.4 41 59-102 7-47 (57)
24 1wh3_A 59 kDa 2'-5'-oligoadeny 62.6 15 0.00051 26.4 5.3 34 43-76 16-52 (87)
25 3mtn_B UBA80, ubcep1, ubiquiti 61.9 10 0.00035 26.8 4.3 36 41-76 10-48 (85)
26 1yx5_B Ubiquitin; proteasome, 61.6 12 0.00042 27.9 4.8 37 40-76 6-45 (98)
27 4dwf_A HLA-B-associated transc 61.0 12 0.0004 27.3 4.5 37 40-76 11-50 (90)
28 1wx8_A Riken cDNA 4931431F19; 60.8 28 0.00094 25.7 6.6 44 10-69 8-51 (96)
29 1v5o_A 1700011N24RIK protein; 59.8 28 0.00096 26.4 6.7 34 43-76 20-56 (102)
30 3n3k_B Ubiquitin; hydrolase, p 59.4 11 0.00039 26.7 4.1 37 40-76 9-48 (85)
31 3phx_B Ubiquitin-like protein 58.9 13 0.00046 26.3 4.4 37 40-76 10-49 (79)
32 2kd0_A LRR repeats and ubiquit 56.3 16 0.00056 27.0 4.7 35 42-76 19-56 (85)
33 3k9o_B Ubiquitin, UBB+1; E2-25 56.1 16 0.00056 26.8 4.6 38 39-76 6-46 (96)
34 4eew_A Large proline-rich prot 52.7 19 0.00066 26.0 4.5 38 39-76 22-62 (88)
35 4hcn_B Polyubiquitin, ubiquiti 52.5 18 0.00062 27.2 4.5 35 42-76 30-67 (98)
36 1sif_A Ubiquitin; hydrophobic 52.3 19 0.00064 26.6 4.4 37 40-76 15-54 (88)
37 1wjn_A Tubulin-folding protein 52.2 19 0.00065 27.1 4.5 35 43-77 21-58 (97)
38 1wgg_A Ubiquitin carboxyl-term 51.0 40 0.0014 25.6 6.2 26 44-69 16-42 (96)
39 3dbh_I NEDD8; cell cycle, acti 50.7 17 0.00057 26.0 3.8 35 42-76 20-57 (88)
40 3v6c_B Ubiquitin; structural g 50.6 19 0.00066 26.4 4.3 35 42-76 25-62 (91)
41 3u30_A Ubiquitin, linear DI-ub 50.4 27 0.00091 28.6 5.5 36 42-77 28-66 (172)
42 2pjh_A Protein NPL4, nuclear p 50.3 5.3 0.00018 30.0 1.1 38 42-80 12-52 (80)
43 2hj8_A Interferon-induced 17 k 49.6 24 0.00081 25.9 4.6 34 43-76 13-49 (88)
44 4fbj_B NEDD8; effector-HOST ta 48.2 24 0.00083 26.0 4.5 37 40-76 6-45 (88)
45 1ttn_A DC-UBP, dendritic cell- 48.1 24 0.00082 27.0 4.6 34 43-76 32-68 (106)
46 1wy8_A NP95-like ring finger p 47.8 37 0.0013 24.5 5.3 33 45-77 19-55 (89)
47 2kk8_A Uncharacterized protein 47.5 27 0.00094 25.8 4.7 38 40-77 16-56 (84)
48 2ojr_A Ubiquitin; lanthide-bin 47.0 29 0.00099 26.8 4.9 34 43-76 44-80 (111)
49 3m62_B UV excision repair prot 45.2 23 0.00078 27.3 4.1 39 39-77 6-47 (106)
50 1wxv_A BAG-family molecular ch 44.9 37 0.0013 24.9 5.1 32 46-77 18-57 (92)
51 2wyq_A HHR23A, UV excision rep 42.4 38 0.0013 24.0 4.6 37 41-77 12-54 (85)
52 2kdi_A Ubiquitin, vacuolar pro 42.1 34 0.0011 26.8 4.6 38 39-76 14-54 (114)
53 1v5t_A 8430435I17RIK protein; 41.9 24 0.00081 26.2 3.6 26 44-69 16-42 (90)
54 3q3f_A Ribonuclease/ubiquitin 41.8 36 0.0012 29.6 5.2 49 20-69 87-140 (189)
55 2uyz_B Small ubiquitin-related 41.3 34 0.0012 24.1 4.2 35 42-76 11-48 (79)
56 2kan_A Uncharacterized protein 38.9 52 0.0018 24.8 5.1 31 46-76 26-59 (94)
57 3vdz_A Ubiquitin-40S ribosomal 38.7 40 0.0014 26.1 4.6 35 42-76 43-80 (111)
58 2l7r_A Ubiquitin-like protein 36.6 34 0.0012 25.5 3.7 34 44-77 27-63 (93)
59 1wyw_B Ubiquitin-like protein 36.1 43 0.0015 25.2 4.2 34 43-76 30-66 (97)
60 1wx7_A Ubiquilin 3; ubiquitin- 35.9 53 0.0018 24.9 4.8 30 48-77 30-62 (106)
61 1uel_A HHR23B, UV excision rep 34.3 72 0.0025 23.7 5.2 36 41-76 7-48 (95)
62 2faz_A Ubiquitin-like containi 34.3 59 0.002 22.7 4.5 34 43-76 11-49 (78)
63 3u30_A Ubiquitin, linear DI-ub 34.1 99 0.0034 25.1 6.5 37 40-76 102-141 (172)
64 3b08_A Polyubiquitin-C, ubiqui 34.1 1.3E+02 0.0046 23.1 7.0 37 40-76 82-121 (152)
65 1wia_A Hypothetical ubiquitin- 34.1 47 0.0016 24.5 4.1 34 43-76 16-49 (95)
66 1we7_A SF3A1 protein; structur 33.0 58 0.002 25.2 4.7 35 42-76 43-80 (115)
67 1j8c_A Ubiquitin-like protein 32.2 62 0.0021 25.8 4.8 34 44-77 41-77 (125)
68 3m63_B Ubiquitin domain-contai 32.0 24 0.00084 27.0 2.3 27 43-69 36-62 (101)
69 2dzm_A FAS-associated factor 1 32.0 89 0.003 24.4 5.6 27 44-70 18-44 (100)
70 1uh6_A Ubiquitin-like 5; beta- 31.9 1.5E+02 0.005 23.5 6.9 34 44-77 38-74 (100)
71 3rt3_B Ubiquitin-like protein 30.9 82 0.0028 25.0 5.4 31 40-70 8-38 (159)
72 2klc_A Ubiquilin-1; ubiquitin- 30.6 71 0.0024 24.2 4.7 32 45-76 35-69 (101)
73 3b08_A Polyubiquitin-C, ubiqui 29.3 71 0.0024 24.7 4.6 35 42-76 8-45 (152)
74 2kjr_A CG11242; UBL, ubiquitin 28.1 96 0.0033 23.7 5.1 31 46-76 29-62 (95)
75 3ce8_A Putative PII-like nitro 27.2 44 0.0015 27.5 3.2 86 35-122 11-115 (120)
76 3b1l_X E3 ubiquitin-protein li 32.7 14 0.00047 25.9 0.0 30 40-69 6-35 (76)
77 1yqb_A Ubiquilin 3; structural 26.3 66 0.0022 24.5 3.8 29 48-76 35-66 (100)
78 1we6_A Splicing factor, putati 24.6 78 0.0027 24.2 4.0 34 43-76 39-76 (111)
79 2daf_A FLJ35834 protein; hypot 24.2 98 0.0033 25.6 4.7 66 43-123 25-93 (118)
80 2k8h_A Small ubiquitin protein 23.2 2.8E+02 0.0096 22.0 7.5 40 44-83 36-76 (110)
81 1y8x_B Ubiquitin-activating en 23.1 39 0.0013 26.9 2.0 35 43-77 3-40 (98)
82 3rt3_B Ubiquitin-like protein 22.7 1E+02 0.0034 24.6 4.4 36 41-76 88-126 (159)
83 3plu_A Ubiquitin-like modifier 22.3 90 0.0031 24.7 4.0 36 42-77 29-67 (93)
84 2qgq_A Protein TM_1862; alpha- 21.8 2.3E+02 0.0078 25.0 7.0 60 51-122 132-197 (304)
85 4ayb_F DNA-directed RNA polyme 21.4 67 0.0023 25.8 3.1 38 59-104 67-109 (113)
86 1x1m_A Ubiquitin-like protein 21.0 1.2E+02 0.0041 23.1 4.4 24 45-68 26-58 (107)
87 3nku_A DRRA, SIDM; posttransla 20.9 50 0.0017 29.1 2.4 25 81-105 104-128 (213)
88 1wf9_A NPL4 family protein; be 20.8 88 0.003 24.0 3.6 26 44-70 17-43 (107)
89 1wgd_A Homocysteine-responsive 20.5 1.6E+02 0.0055 21.5 4.9 32 46-77 21-57 (93)
90 2kj6_A Tubulin folding cofacto 20.4 1.2E+02 0.0042 23.3 4.3 32 46-77 28-62 (97)
No 1
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=99.55 E-value=2.7e-14 Score=117.05 Aligned_cols=75 Identities=20% Similarity=0.352 Sum_probs=68.0
Q ss_pred ecCceeEEEecCCCCHHHHHHHHHhhcCCceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEccCC
Q 021168 42 VGGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPST 121 (316)
Q Consensus 42 VGGeTRIVsV~R~isF~eL~~KLs~l~~~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp~~ 121 (316)
.+||+|||.|+|.|+|.||.+|+.++||+.+.|.|+ +++.||+++|+|||++.||+|||.... .-||+||-+.+
T Consensus 15 ~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~ldL~y~----n~EllIpl~sQeDLDkaIellDrss~~--kSLrIlL~~~~ 88 (103)
T 2cu1_A 15 HRGEKRILQFPRPVKLEDLRSKAKIAFGQSMDLHYT----NNELVIPLTTQDDLDKAVELLDRSIHM--KSLKILLVING 88 (103)
T ss_dssp ETTEEEEEEEESSCCHHHHHHHHHHHHSSCEEEEEC----SSSSCEECCSHHHHHHHHHHHHHCSSC--CSEEEEEEECC
T ss_pred ecCeEEEEeccCCccHHHHHHHHHHHhCCeeeEEEe----cceEEEeccCHHHHHHHHHHHccCCcc--cceEEEEecCC
Confidence 478999999999999999999999999999999999 889999999999999999999998653 44677888765
Q ss_pred C
Q 021168 122 P 122 (316)
Q Consensus 122 p 122 (316)
.
T Consensus 89 ~ 89 (103)
T 2cu1_A 89 S 89 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=98.86 E-value=1.3e-08 Score=81.03 Aligned_cols=70 Identities=16% Similarity=0.329 Sum_probs=62.8
Q ss_pred CceeEEEecCCCCHHHHHHHHHhhcC----CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEcc
Q 021168 44 GETRVVAVPREINFSELMKKLSTIDD----GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFP 119 (316)
Q Consensus 44 GeTRIVsV~R~isF~eL~~KLs~l~~----~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp 119 (316)
|+.|++.|+.+|+|.+|..||.++|+ ..++|||- +|| ..+|+|++|+||+..|.-|+... ..+|.+.+||
T Consensus 15 gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~--DEe-GD~itisSd~EL~eAl~l~~~n~---~~~l~ihvf~ 88 (89)
T 1vd2_A 15 GDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI--DEE-GDPCTVSSQLELEEAFRLYELNK---DSELLIHVFP 88 (89)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC--CSS-SCCEECCSHHHHHHHHHHHHHTS---CCCEEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE--CCC-CCcccccCHHHHHHHHHHHHccC---CCCEEEEEcc
Confidence 45789999999999999999999997 46999998 676 88999999999999999998765 4789999997
No 3
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=98.19 E-value=7.5e-06 Score=66.53 Aligned_cols=69 Identities=25% Similarity=0.292 Sum_probs=57.0
Q ss_pred CceeEEEecCCCCHHHHHHHHHhhcC--------CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEE
Q 021168 44 GETRVVAVPREINFSELMKKLSTIDD--------GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRA 115 (316)
Q Consensus 44 GeTRIVsV~R~isF~eL~~KLs~l~~--------~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRv 115 (316)
++++.|.|+.+|+|.+|..|+.+.++ ..+.|||| +|| ...|++.+||||+-.+++..... ..+|.+
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYk--DEd-GD~Vtl~sddDl~~A~e~~~e~~---~~~l~I 95 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DED-GDFVVLGSDEDWNVAKEMLAENN---EKFLNI 95 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEE--CSS-SCEEEECSHHHHHHHHHHHHHTT---CCEEEE
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEE--cCC-CCEEEEcCHHHHHHHHHHHHhhh---cCeEEE
Confidence 68899999999999999999987665 22689999 554 48999999999999999886553 468887
Q ss_pred EEc
Q 021168 116 FLF 118 (316)
Q Consensus 116 FLF 118 (316)
+++
T Consensus 96 wv~ 98 (98)
T 1q1o_A 96 RLY 98 (98)
T ss_dssp EEC
T ss_pred EEC
Confidence 764
No 4
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=98.12 E-value=1.8e-05 Score=64.15 Aligned_cols=73 Identities=23% Similarity=0.474 Sum_probs=63.7
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCCceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEccCC
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPST 121 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp~~ 121 (316)
-||.|||-++|.++|.||.+|+...||+.+.|-|- +-.-+|-+.|-|||+.-||-.||-..- .-||+.|....
T Consensus 12 ~gEKRIi~f~RPvkf~dl~qkv~~afGq~ldl~y~----nnEL~iPL~~Q~DLDkAvelLDrs~~m--kSLRIlL~~~~ 84 (94)
T 2jrh_A 12 NGERRIIAFSRPVKYEDVEHKVTTVFGQPLDLHYM----NNELSILLKNQDDLDKAIDILDRSSSM--KSLRILLLSQD 84 (94)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHCSSEEEEEE----CSSCEEECCSHHHHHHHHHHHHHSTTT--TEEEEEEEECS
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCCeeeeEEe----cceeEEeccCHHHHHHHHHHhccCccc--cceEEEEEcCC
Confidence 38999999999999999999999999999999998 235799999999999999999987653 35788887654
No 5
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=98.10 E-value=6.4e-06 Score=63.99 Aligned_cols=68 Identities=25% Similarity=0.295 Sum_probs=57.8
Q ss_pred ceeEEEecCCCCHHHHHHHHHhhcC--------CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEE
Q 021168 45 ETRVVAVPREINFSELMKKLSTIDD--------GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAF 116 (316)
Q Consensus 45 eTRIVsV~R~isF~eL~~KLs~l~~--------~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvF 116 (316)
+++.|.|+.+|+|.+|..|+.+.++ ..+.|||| .|| ...|++.+||||+--++...... .++|.|+
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYk--DEd-GD~Vti~sddDl~~A~~~~~~~~---~~~leiW 75 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DED-GDFVVLGSDEDWNVAKEMLAENN---EKFLNIR 75 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEE--ETT-TEEEECCSTTHHHHHHHHHHHHC---CCEEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEE--cCC-CCEEEEcCHHHHHHHHHHHHhhh---cCeEEEE
Confidence 6899999999999999999998876 34789999 565 68999999999999888775543 4788888
Q ss_pred Ec
Q 021168 117 LF 118 (316)
Q Consensus 117 LF 118 (316)
+|
T Consensus 76 v~ 77 (77)
T 1pqs_A 76 LY 77 (77)
T ss_dssp CC
T ss_pred EC
Confidence 76
No 6
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=98.01 E-value=2.6e-05 Score=64.66 Aligned_cols=71 Identities=24% Similarity=0.484 Sum_probs=61.6
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCCceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEcc
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFP 119 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp 119 (316)
-||.|||-++|.++|.||.+|+...||+.+.|-|- +-.-+|-+.|-|||+.-||-.||-..-+ -||+.|..
T Consensus 39 ~gEKRIiqf~RPvkf~dl~qkv~~afGq~ldl~y~----nnEL~IPL~~Q~DLDkAvelLDrs~~mk--SLRIlL~~ 109 (111)
T 2c60_A 39 NGERRIIAFSRPVKYEDVEHKVTTVFGQPLDLHYM----NNELSILLKNQDDLDKAIDILDRSSSMK--SLRILLLS 109 (111)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHSSCCEEEEE----CSSCEEECCSHHHHHHHHHHHHHCSSCC--SEEEEEEC
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCCeeeeEEe----cceEEEecccHHHHHHHHHHhccCcccc--ceEEEEec
Confidence 37999999999999999999999999999999998 3357999999999999999999876534 46777653
No 7
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=97.98 E-value=2.7e-05 Score=63.76 Aligned_cols=71 Identities=21% Similarity=0.378 Sum_probs=61.5
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCCceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEcc
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFP 119 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp 119 (316)
-||.|||-++|.+.|.||.+|+...||+.+.|-|- +-.-+|-+.|-|||+.-||-.||-..-+ -||+.|..
T Consensus 28 ~gEkRIi~f~RPv~f~el~~kv~~afGq~ldl~y~----nnEL~iPL~~Q~DLDkAvelLDrs~~~k--SLrIlL~~ 98 (100)
T 2npt_B 28 RGEKRILQFPRPVKLEDLRSKAKIAFGQSMDLHYT----NNELVIPLTTQDDLDKAVELLDRSIHMK--SLKILLVI 98 (100)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHTSCEEEEEE----ETTEEEECCCHHHHHHHHHHHHHCSSCC--SEEEEEEE
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCCeeeeEEe----cceeEEecccHHHHHHHHHHhccCcccc--ceEEEEec
Confidence 37999999999999999999999999999999998 2357999999999999999999876544 36776643
No 8
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=97.96 E-value=3.4e-05 Score=64.35 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=63.2
Q ss_pred CCccccCCCCCCccEEEEeeeCCeeeeCCCCCceeeecCceeEEEecCCC-----------CHHHHHHHHHhhcC----C
Q 021168 6 GDEALSSLNSPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREI-----------NFSELMKKLSTIDD----G 70 (316)
Q Consensus 6 ~~~~~~~~~~p~~kVKllCSyGGrIlPRp~DGkLrYVGGeTRIVsV~R~i-----------sF~eL~~KLs~l~~----~ 70 (316)
.++|.-|..-+...+.+-|-+.|+=. .+.|.|-++++.+. +|.+|+.|+.++|. .
T Consensus 7 ~~~~~~~~~~~~~~l~vKayl~~~~~----------~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~ 76 (117)
T 2ktr_A 7 NDGAYEGDELHMGSLTVKAYLLGKEE----------AAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPG 76 (117)
T ss_dssp -------------CEEEEEEEECSSS----------CEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSS
T ss_pred CccceeccccccccEEEEEEEecCCC----------CCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCC
Confidence 34566666666667777776666211 46899999998653 99999999999994 4
Q ss_pred ceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021168 71 DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFL 117 (316)
Q Consensus 71 ~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFL 117 (316)
.|.|||. +|| .-||.|++||||+.-+.+-. ...||||+
T Consensus 77 ~f~l~Yk--DEd-GDlItISsDeEL~~Al~~~~------~~~lRlyV 114 (117)
T 2ktr_A 77 GFQAHYR--AER-GDLVAFSSDEELTMAMSYVK------DDIFRIYI 114 (117)
T ss_dssp CEEEEEE--CTT-CCEEEECSHHHHHHHHHHCC------SSEEEEEE
T ss_pred cEEEEEE--CCC-CCEEEecCHHHHHHHHHhcC------CCeEEEEE
Confidence 7999999 555 56999999999998887522 36889987
No 9
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=97.89 E-value=3.5e-05 Score=62.64 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=55.8
Q ss_pred ecCceeEEEecCC-----------CCHHHHHHHHHhhcC----CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcC
Q 021168 42 VGGETRVVAVPRE-----------INFSELMKKLSTIDD----GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHG 106 (316)
Q Consensus 42 VGGeTRIVsV~R~-----------isF~eL~~KLs~l~~----~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~ 106 (316)
.+.|.|=++++++ .+|.+|+.|+.++|. ..+.|||. +|| .-||+|++||||...+.+-.
T Consensus 18 ~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~--Ded-GDlItiSsDeEL~~Al~~~~--- 91 (102)
T 2kkc_A 18 AAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYR--AER-GDLVAFSSDEELTMAMSYVK--- 91 (102)
T ss_dssp CEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTT-CCEEEECSHHHHHHHHHHCC---
T ss_pred CCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEE--CCC-CCEEEecCHHHHHHHHHhcC---
Confidence 4789999999874 489999999999984 47999999 555 67999999999998887532
Q ss_pred CCCCCcEEEEE
Q 021168 107 SEGTPRLRAFL 117 (316)
Q Consensus 107 ~~~s~RLRvFL 117 (316)
..-||||+
T Consensus 92 ---~~~lRlyV 99 (102)
T 2kkc_A 92 ---DDIFRIYI 99 (102)
T ss_dssp ---SSEEEEEE
T ss_pred ---CCeEEEEE
Confidence 46889987
No 10
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=97.28 E-value=0.0013 Score=52.69 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=54.7
Q ss_pred cCceeEEEe--cCCCCHHHHHHHHHhhcC-CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEc
Q 021168 43 GGETRVVAV--PREINFSELMKKLSTIDD-GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLF 118 (316)
Q Consensus 43 GGeTRIVsV--~R~isF~eL~~KLs~l~~-~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLF 118 (316)
.||++.+-| .|.++|.||.+.+...|+ .++.|||. +|| +-.|+|+++++++.++.-+.+ ....|++++|
T Consensus 14 ~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~~~ikY~--DEe-nD~v~i~Sq~E~eEAlkva~k----~~n~L~m~v~ 85 (87)
T 2bkf_A 14 KNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYL--DEE-NEEVSINSQGEYEEALKMAVK----QGNQLQMQVH 85 (87)
T ss_dssp TTEEEEEEESCGGGCCHHHHHHHHHHHHTCSSEEEEEE--CTT-SCEEEECSHHHHHHHHHHHHH----TTTEEEEEEE
T ss_pred cCCeeEEEeccCCCCCHHHHHHHHHHHcCCCceEEEEE--cCC-CCEEEEecHHHHHHHHHHhcc----CCCEEEEEEe
Confidence 467777444 679999999999999999 68999998 566 779999999998887764443 2456888775
No 11
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=97.26 E-value=0.00043 Score=54.64 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=53.8
Q ss_pred eeeecCceeEEEecCCCCHHHHHHHHHhhcC---CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEE
Q 021168 39 LKYVGGETRVVAVPREINFSELMKKLSTIDD---GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRA 115 (316)
Q Consensus 39 LrYVGGeTRIVsV~R~isF~eL~~KLs~l~~---~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRv 115 (316)
..|. +|.+|.|+++++|++|..||++.+. ..+.|-|.=+ +=..++ +.+||||+.++.. . ...||.+
T Consensus 10 V~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~--~s~~~v-i~~d~dl~~aw~~---~---~n~~LtL 78 (83)
T 1oey_A 10 VHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR--DSNELV-PLSEDSMKDAWGQ---V---KNYCLTL 78 (83)
T ss_dssp EESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT--TCSSCE-ECCTTTHHHHHTT---C---BTTEEEE
T ss_pred EEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC--CCCCee-ccChHHHHHHHHh---c---cCCcEEE
Confidence 3455 7899999999999999999999887 3578999864 446788 9999999988742 1 1357877
Q ss_pred EEc
Q 021168 116 FLF 118 (316)
Q Consensus 116 FLF 118 (316)
+..
T Consensus 79 ~C~ 81 (83)
T 1oey_A 79 WCE 81 (83)
T ss_dssp EEC
T ss_pred EEe
Confidence 753
No 12
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=97.12 E-value=0.0054 Score=50.31 Aligned_cols=70 Identities=16% Similarity=0.277 Sum_probs=55.5
Q ss_pred CceeE--EEecCCCCHHHHHHHHHhhcC-CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEccC
Q 021168 44 GETRV--VAVPREINFSELMKKLSTIDD-GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPS 120 (316)
Q Consensus 44 GeTRI--VsV~R~isF~eL~~KLs~l~~-~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp~ 120 (316)
||++. |+-.|.++|.||.+.+...|+ .++.|||. +|| +-.|+|+++++++.++.-+.+- ...|++++|-.
T Consensus 23 ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~~~IkY~--DEe-nD~V~i~Sq~E~eEAlkva~k~----~n~L~m~V~~~ 95 (101)
T 1wj6_A 23 NEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYL--DEE-NEEVSINSQGEYEEALKMAVKQ----GNQLQMQVHEG 95 (101)
T ss_dssp TEEEEEEESCTTTSCHHHHHHHHHHHHCCSSBCCEEE--CTT-SCEECCCSHHHHHHHHHHHHHH----TSEEEEECCBC
T ss_pred CCeeEEEecCCCCCCHHHHHHHHHHHcCCCceEEEEe--cCC-CCEEEEecHHHHHHHHHHhccC----CCEEEEEEeec
Confidence 45555 445779999999999999999 68999998 566 7899999999988887755432 35799988763
No 13
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=96.92 E-value=0.0045 Score=49.27 Aligned_cols=67 Identities=27% Similarity=0.471 Sum_probs=52.8
Q ss_pred eecCceeEEEecCC--CCHHHHHHHHHhhcC---CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEE
Q 021168 41 YVGGETRVVAVPRE--INFSELMKKLSTIDD---GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRA 115 (316)
Q Consensus 41 YVGGeTRIVsV~R~--isF~eL~~KLs~l~~---~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRv 115 (316)
.-|+|.|=.+++|+ .+|.+|..+|..++. .++.|+|.= || ..||.|+|||+|..-+ ...+ +-|||
T Consensus 12 kf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D--~d-GDLlpInnDdnl~~Al------~~a~-plLRl 81 (86)
T 1wmh_B 12 KFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD--AH-GDLLPLTNDDSLHRAL------ASGP-PPLRL 81 (86)
T ss_dssp EETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC--TT-SCEEECCSHHHHHHHT------TSSS-SCEEE
T ss_pred ecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC--CC-CCEeeecCHHHHHHHH------HhCC-CcEEE
Confidence 45788899999977 899999999999886 489999993 44 5699999999876433 2222 47898
Q ss_pred EE
Q 021168 116 FL 117 (316)
Q Consensus 116 FL 117 (316)
|+
T Consensus 82 ~I 83 (86)
T 1wmh_B 82 LV 83 (86)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 14
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=96.61 E-value=0.0064 Score=50.35 Aligned_cols=70 Identities=26% Similarity=0.330 Sum_probs=55.6
Q ss_pred cCceeEEEecCCC----CHHHHHHHHHhhcC-CceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEE
Q 021168 43 GGETRVVAVPREI----NFSELMKKLSTIDD-GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFL 117 (316)
Q Consensus 43 GGeTRIVsV~R~i----sF~eL~~KLs~l~~-~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFL 117 (316)
|=.+|=|+|..++ +|.||+..+...|. .+++|+|+=+. .-||.+.+||||.-||.+=..+. .+.| +
T Consensus 17 ~~~irdI~veedl~~~P~ykdLl~lmr~~F~~~DIaLNYrD~e---GDLIrilddeDv~lmi~~sr~~~----s~k~--~ 87 (107)
T 1oey_J 17 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAE---GDLVRLLSDEDVALMVRQARGLP----SQKR--L 87 (107)
T ss_dssp EEEEEEEEECSCTTCCCCHHHHHHHHHHHHCCSSEEEEEECTT---SCEEECCSHHHHHHHHHHCCCCC----CTTC--B
T ss_pred CceeeeEEEccccccCCCHHHHHHHHHHHhcccceeeeeecCC---CCEEEEcchHHHHHHHHHhhcCc----cccc--c
Confidence 5567889998887 59999999999997 68999999554 34999999999999999875443 3333 7
Q ss_pred ccCC
Q 021168 118 FPST 121 (316)
Q Consensus 118 Fp~~ 121 (316)
||=+
T Consensus 88 FPWe 91 (107)
T 1oey_J 88 FPWK 91 (107)
T ss_dssp CSSC
T ss_pred ccee
Confidence 7754
No 15
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=96.09 E-value=0.039 Score=44.05 Aligned_cols=55 Identities=15% Similarity=0.314 Sum_probs=43.9
Q ss_pred CceeEEEecCCCCHHHHHHHHHhhcC-CceEEEEecCCCCCCceeeccChHHHHHHHHH
Q 021168 44 GETRVVAVPREINFSELMKKLSTIDD-GDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEE 101 (316)
Q Consensus 44 GeTRIVsV~R~isF~eL~~KLs~l~~-~~~~LKYQLPgEDLDaLISVssDEDL~nMmeE 101 (316)
++--+|.||.+|+|++|..||.+-.. .++.+.+-. +|..-. .|.+|+||..-|+.
T Consensus 21 DDIiAIrvP~di~~~~L~dKi~~RLk~~~~~l~~yk-de~~g~--~i~sD~dl~~aiqr 76 (85)
T 1ip9_A 21 DDIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKL-FDGSGE--EIKTDSQVSNIIQA 76 (85)
T ss_dssp TCCEEEEECSCCCHHHHHHHHHHHHTSSCEEEEECC-SSSCCS--CCCSHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhcccceEEEEec-CCCCCC--cccCHHHHHHHHHh
Confidence 45568999999999999999998876 455554444 666656 99999999999875
No 16
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=88.55 E-value=1.4 Score=36.19 Aligned_cols=50 Identities=24% Similarity=0.467 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHhhcCC--ceEEEEecCCCCCCceeeccChHHHHHHHHHHHhc
Q 021168 53 REINFSELMKKLSTIDDG--DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRH 105 (316)
Q Consensus 53 R~isF~eL~~KLs~l~~~--~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl 105 (316)
..++|.++..-+..+... .-.+.|. +||-| =|+|.+||+|+.||.-|...
T Consensus 35 ~~L~FrDvL~~I~~vmP~aT~TAFeYE--DE~gD-RITVRSDeE~kAMlsyy~~~ 86 (106)
T 2npt_A 35 PQLLFRDVLDVIGQVLPEATTTAFEYE--DEDGD-RITVRSDEEMKAMLSYYYST 86 (106)
T ss_dssp -CCCHHHHHHHHHHHSTTSCCSEEEEE--CTTSC-EEEECSHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhCccceeeeeeec--cccCC-eeEEcchHHHHHHHHHHHHH
Confidence 678999999999999873 3468887 56644 69999999999999988753
No 17
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=82.29 E-value=4.6 Score=30.68 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=32.3
Q ss_pred CCCCccEEEEeeeCCeeeeCCCCCceeeecCceeEEEecCCCCHHHHHHHHHhhcCC
Q 021168 14 NSPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDDG 70 (316)
Q Consensus 14 ~~p~~kVKllCSyGGrIlPRp~DGkLrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~ 70 (316)
..+...|++.+.++|+. ..|.|+.+.+..+|+.+|.+..+.
T Consensus 12 ~~~~~~~~i~Vk~~g~~----------------~~i~v~~~~TV~~LK~~I~~~tgi 52 (95)
T 1v86_A 12 GVGKELVDLKIIWNKTK----------------HDVKVPLDSTGSELKQKIHSITGL 52 (95)
T ss_dssp CCCCCCEEEEEEETTEE----------------EEEEECTTSBHHHHHHHHHHHHCS
T ss_pred CCCCceEEEEEEECCEE----------------EEEEECCCCcHHHHHHHHHHHHCc
Confidence 34456788888776653 448999999999999999999873
No 18
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=73.76 E-value=3.3 Score=30.71 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=32.5
Q ss_pred eeeecCceeEEE-ecCCCCHHHHHHHHHhhcCC---ceEEEEecCCCCC
Q 021168 39 LKYVGGETRVVA-VPREINFSELMKKLSTIDDG---DIVLKYQLIPEDL 83 (316)
Q Consensus 39 LrYVGGeTRIVs-V~R~isF~eL~~KLs~l~~~---~~~LKYQLPgEDL 83 (316)
+|..+|. ++|. |+.+.++.+|+.++++..+. ...|.|--|+..|
T Consensus 5 vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l 52 (86)
T 2kzr_A 5 CKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECL 52 (86)
T ss_dssp EEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCC
T ss_pred EEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCccc
Confidence 4566775 4577 99999999999999988763 4567776666443
No 19
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=71.44 E-value=6.2 Score=27.23 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=30.0
Q ss_pred eeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 40 KYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 40 rYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
+...|++..|.|+.+.+..+|+.++++..+- ...|.|
T Consensus 6 k~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp EETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 3446788889999999999999999998873 455666
No 20
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.98 E-value=11 Score=26.41 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=27.4
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
+|++..|.|+.+.+..+|++++++..+- ...|-|
T Consensus 16 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 16 QGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp TSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 3566678999999999999999998873 455666
No 21
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=65.84 E-value=8.5 Score=26.51 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=29.1
Q ss_pred eecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 41 YVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 41 YVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
...|++..+.|+.+.+..+|+.++++..+- ...|-|
T Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp CTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 345778889999999999999999998873 355555
No 22
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=64.61 E-value=11 Score=26.21 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=27.8
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
+|.+..|.|+.+.+..+|+.++++..+- ...|-|
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 48 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY 48 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 5677789999999999999999998873 345555
No 23
>1hbw_A Regulatory protein GAL4; transcriptional activator, galactose and melibiose metabolism, dimerization domain, coiled-coil dimeric; NMR {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=64.48 E-value=1.2 Score=33.39 Aligned_cols=41 Identities=17% Similarity=0.358 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCceEEEEecCCCCCCceeeccChHHHHHHHHHH
Q 021168 59 ELMKKLSTIDDGDIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEY 102 (316)
Q Consensus 59 eL~~KLs~l~~~~~~LKYQLPgEDLDaLISVssDEDL~nMmeEY 102 (316)
|.-.||.++- -.|+|-+|+||+|.|+--.+.++|+.|+.-+
T Consensus 7 eVEnRl~qLE---~ll~~lfP~~d~D~ll~~~~l~~ir~~L~~~ 47 (57)
T 1hbw_A 7 EVESRLERLE---QLFLLIFPREDLDMILKMDSLRDIEALLTGL 47 (57)
T ss_dssp HHHHHHHHHH---HHCSSSSSSSCCCHHHHHHSSHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHCCcccHHHHHcCCChHHHHHHHHHH
Confidence 4444554432 2267889999999999999999999998765
No 24
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=62.59 E-value=15 Score=26.44 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=27.5
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
.|++..|.|+.+.+..+|++++++..+- ...|-|
T Consensus 16 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 52 (87)
T 1wh3_A 16 DGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF 52 (87)
T ss_dssp TTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE
T ss_pred CCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE
Confidence 3566778999999999999999998873 455655
No 25
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=61.92 E-value=10 Score=26.83 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=29.0
Q ss_pred eecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 41 YVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 41 YVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
...|++..|.|+.+.+..+|+.++++..+- ...|-|
T Consensus 10 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~ 48 (85)
T 3mtn_B 10 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp CTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred cCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 345788889999999999999999998873 345555
No 26
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=61.56 E-value=12 Score=27.90 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=30.3
Q ss_pred eeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 40 KYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 40 rYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
+...|++..|.|+.+.+..+|+.++++..+- ...|-|
T Consensus 6 k~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp EETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 4456788899999999999999999998873 455666
No 27
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=60.97 E-value=12 Score=27.32 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=30.3
Q ss_pred eeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 40 KYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 40 rYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
+...|.+..|.|+.+.+..+|+.++.+..+- ...|-|
T Consensus 11 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 50 (90)
T 4dwf_A 11 KTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 50 (90)
T ss_dssp EETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 4456888889999999999999999998873 345666
No 28
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=60.77 E-value=28 Score=25.75 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=32.1
Q ss_pred ccCCCCCCccEEEEeeeCCeeeeCCCCCceeeecCceeEEEecCCCCHHHHHHHHHhhcC
Q 021168 10 LSSLNSPRSRVKFLCSHGGKILPRAVDGNLKYVGGETRVVAVPREINFSELMKKLSTIDD 69 (316)
Q Consensus 10 ~~~~~~p~~kVKllCSyGGrIlPRp~DGkLrYVGGeTRIVsV~R~isF~eL~~KLs~l~~ 69 (316)
.+++..+...|++.+..- |.+..|.|+.+.+..+|+.++.+..+
T Consensus 8 ~~~~~~~~~~m~i~Vk~~----------------g~~~~~~v~~~~TV~~LK~~I~~~~g 51 (96)
T 1wx8_A 8 VSGREPSSRIIRVSVKTP----------------QDCHEFFLAENSNVRRFKKQISKYLH 51 (96)
T ss_dssp CCCSCCCSCEEEEEEECS----------------SSEEEEEEETTCCHHHHHHHHHHHTC
T ss_pred ccCCCCCCCcEEEEEEEC----------------CeEEEEEECCCCCHHHHHHHHHHHhC
Confidence 444444556777776432 34456889999999999999999886
No 29
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=59.79 E-value=28 Score=26.44 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=27.3
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
.|++..|.|+.+.+..+|+++|++..+- ...|-|
T Consensus 20 ~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (102)
T 1v5o_A 20 TEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY 56 (102)
T ss_dssp CCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE
Confidence 4577779999999999999999999873 344544
No 30
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=59.41 E-value=11 Score=26.69 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=29.8
Q ss_pred eeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 40 KYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 40 rYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
+...|++..|.|+.+.+..+|+.++++..+- ...|-|
T Consensus 9 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 9 KTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp ECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 3346788889999999999999999998873 355655
No 31
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=58.92 E-value=13 Score=26.27 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=29.8
Q ss_pred eeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 40 KYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 40 rYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
+...|.+..|.|+.+.+..+|++++.+..+- ...|-|
T Consensus 10 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 49 (79)
T 3phx_B 10 RNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (79)
T ss_dssp ECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE
Confidence 3456788889999999999999999998873 345555
No 32
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=56.31 E-value=16 Score=26.95 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=28.2
Q ss_pred ecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 42 VGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 42 VGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
.+|++..|.|+.+.+..+|++++++..+. ...|.|
T Consensus 19 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF 56 (85)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 46777778999999999999999998873 455555
No 33
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=56.11 E-value=16 Score=26.76 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=30.6
Q ss_pred eeeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 39 LKYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 39 LrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
++...|++..|.|+.+.+..+|+.++.+..+- ...|-|
T Consensus 6 vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 6 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 34557888889999999999999999999873 345555
No 34
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=52.66 E-value=19 Score=26.03 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=30.8
Q ss_pred eeeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 39 LKYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 39 LrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
++..+|.+..|.|+.+.+..+|+.++.+..+- ...|-|
T Consensus 22 Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 62 (88)
T 4eew_A 22 VKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 62 (88)
T ss_dssp EEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 45567888889999999999999999998873 345555
No 35
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=52.52 E-value=18 Score=27.16 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=28.2
Q ss_pred ecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 42 VGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 42 VGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
..|++..|.|+.+.+..+|+.++.+..+. ...|-|
T Consensus 30 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 67 (98)
T 4hcn_B 30 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 67 (98)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 45677889999999999999999998873 344555
No 36
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=52.34 E-value=19 Score=26.57 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=30.2
Q ss_pred eeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 40 KYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 40 rYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
+-..|++..|.|+.+.+..+|+.++++..+- ...|-|
T Consensus 15 ~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 15 KTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp EETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 4456888899999999999999999998873 345655
No 37
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=52.22 E-value=19 Score=27.07 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=28.6
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
.|+..-+.|+.+++..+|+.||.++++. ...|-|.
T Consensus 21 ~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~ 58 (97)
T 1wjn_A 21 ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYE 58 (97)
T ss_dssp SSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEE
Confidence 4556668899999999999999999983 5667776
No 38
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=51.03 E-value=40 Score=25.56 Aligned_cols=26 Identities=12% Similarity=-0.015 Sum_probs=22.1
Q ss_pred Ccee-EEEecCCCCHHHHHHHHHhhcC
Q 021168 44 GETR-VVAVPREINFSELMKKLSTIDD 69 (316)
Q Consensus 44 GeTR-IVsV~R~isF~eL~~KLs~l~~ 69 (316)
|++. -|.|+.+.++.+|+.+|.+..+
T Consensus 16 g~~~~~l~v~~~~TV~~lK~~I~~~tg 42 (96)
T 1wgg_A 16 KEKFEGVELNTDEPPMVFKAQLFALTG 42 (96)
T ss_dssp TEEEEEEEEESSSCHHHHHHHHHHHTC
T ss_pred CEEEEEEEECCCCcHHHHHHHHHHHHC
Confidence 4445 3889999999999999999987
No 39
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=50.72 E-value=17 Score=26.05 Aligned_cols=35 Identities=9% Similarity=0.157 Sum_probs=27.7
Q ss_pred ecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 42 VGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 42 VGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
..|++..|.|+.+.+..+|+.++.+..+- ...|-|
T Consensus 20 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 57 (88)
T 3dbh_I 20 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 57 (88)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 35677789999999999999999998873 334555
No 40
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=50.57 E-value=19 Score=26.42 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=28.3
Q ss_pred ecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 42 VGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 42 VGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
..|++..|.|+.+.+..+|+.++.+..+- ...|-|
T Consensus 25 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 62 (91)
T 3v6c_B 25 LTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 62 (91)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE
Confidence 35677789999999999999999998873 345555
No 41
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=50.37 E-value=27 Score=28.57 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=29.0
Q ss_pred ecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 42 VGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 42 VGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
.+|.+..|.|+.+.+..+|+.|+.+..+- ...|.|.
T Consensus 28 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~ 66 (172)
T 3u30_A 28 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 66 (172)
T ss_dssp TTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 45777889999999999999999998874 3456663
No 42
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=50.32 E-value=5.3 Score=30.01 Aligned_cols=38 Identities=11% Similarity=0.067 Sum_probs=28.8
Q ss_pred ecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEecCC
Q 021168 42 VGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQLIP 80 (316)
Q Consensus 42 VGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQLPg 80 (316)
-.|-.| |.|+.+.++.+|..|+.+.++. ...|++..|.
T Consensus 12 ~~G~~R-i~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p 52 (80)
T 2pjh_A 12 PDGVKR-ITATKRETAATFLKKVAKEFGFQNNGFSVYINRNK 52 (80)
T ss_dssp SSEEEE-CCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCG
T ss_pred CCCCEE-EEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCC
Confidence 446555 5599999999999999998873 4566666665
No 43
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=49.62 E-value=24 Score=25.94 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=27.5
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
.|.+..|.|+.+.+..+|+.++++..+- ...|-|
T Consensus 13 ~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 49 (88)
T 2hj8_A 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (88)
T ss_dssp TSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEES
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 4677789999999999999999998873 345555
No 44
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=48.19 E-value=24 Score=25.96 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=29.8
Q ss_pred eeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 40 KYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 40 rYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
+-..|.+..|.|+.+.+..+|+.++.+..+- ...|-|
T Consensus 6 k~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp EETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 3456888899999999999999999998873 345555
No 45
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=48.07 E-value=24 Score=27.02 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=27.4
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
+|.+..|.|+.+.+..+|+.++.+..+. ...|-|
T Consensus 32 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 68 (106)
T 1ttn_A 32 TGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF 68 (106)
T ss_dssp TTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE
Confidence 4666778999999999999999998873 455655
No 46
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=47.81 E-value=37 Score=24.47 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=26.1
Q ss_pred ceeEE-EecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 45 ETRVV-AVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 45 eTRIV-sV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
++..| .|+.+.+..+|+.++.+..+- ...|-|.
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 55 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR 55 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 56678 599999999999999998873 4556663
No 47
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=47.54 E-value=27 Score=25.80 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=30.4
Q ss_pred eeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 40 KYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 40 rYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
+...|++..|.|+.+.+..+|++++++..+. ...|-|.
T Consensus 16 k~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 56 (84)
T 2kk8_A 16 ENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD 56 (84)
T ss_dssp EETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 4456888889999999999999999999873 3455553
No 48
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=47.04 E-value=29 Score=26.76 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=28.0
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
.|.+..|.|+.+.+..+|+.++++..+- ...|-|
T Consensus 44 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 80 (111)
T 2ojr_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE
Confidence 4677789999999999999999998873 455666
No 49
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=45.16 E-value=23 Score=27.27 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=31.2
Q ss_pred eeeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 39 LKYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 39 LrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
++..+|++..|.|+.+.+..+|+.++.+..+- ...|-|.
T Consensus 6 Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 47 (106)
T 3m62_B 6 FKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYS 47 (106)
T ss_dssp EECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 34567889999999999999999999998873 3455553
No 50
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=44.91 E-value=37 Score=24.89 Aligned_cols=32 Identities=9% Similarity=0.039 Sum_probs=24.5
Q ss_pred eeEEEecCC-----CCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 46 TRVVAVPRE-----INFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 46 TRIVsV~R~-----isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
+..|.|+.+ .+..+|+.+|++..+- ...|-|.
T Consensus 18 ~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 18 KHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp EEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred EEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 446788885 9999999999998873 4556553
No 51
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=42.42 E-value=38 Score=24.03 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=28.0
Q ss_pred eecCceeEEEecCCCCHHHHHHHHHhh---cC---CceEEEEe
Q 021168 41 YVGGETRVVAVPREINFSELMKKLSTI---DD---GDIVLKYQ 77 (316)
Q Consensus 41 YVGGeTRIVsV~R~isF~eL~~KLs~l---~~---~~~~LKYQ 77 (316)
...|++..|.|+.+.+..+|+.++++. .+ ....|-|.
T Consensus 12 ~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~ 54 (85)
T 2wyq_A 12 TLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 54 (85)
T ss_dssp ETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET
T ss_pred ECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC
Confidence 345677789999999999999999997 33 24556553
No 52
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=42.09 E-value=34 Score=26.79 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=31.7
Q ss_pred eeeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 39 LKYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 39 LrYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
.+-..|++..|.|+.+.+..+|+.++++..+- ...|-|
T Consensus 14 vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 54 (114)
T 2kdi_A 14 AKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW 54 (114)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 45677899999999999999999999998873 355656
No 53
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=41.89 E-value=24 Score=26.25 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.4
Q ss_pred CceeEE-EecCCCCHHHHHHHHHhhcC
Q 021168 44 GETRVV-AVPREINFSELMKKLSTIDD 69 (316)
Q Consensus 44 GeTRIV-sV~R~isF~eL~~KLs~l~~ 69 (316)
|++..| .|+.+.+..+|+++|.+..+
T Consensus 16 g~~~~i~~v~~~~TV~~lK~~I~~~~g 42 (90)
T 1v5t_A 16 GQEYSVTTLSEDDTVLDLKQFLKTLTG 42 (90)
T ss_dssp TEEEEECSCCSSSBHHHHHHHHHHHTC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHHC
Confidence 445557 89999999999999999987
No 54
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=41.78 E-value=36 Score=29.63 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=41.0
Q ss_pred EEEEeeeCCeeeeCCCCC-----ceeeecCceeEEEecCCCCHHHHHHHHHhhcC
Q 021168 20 VKFLCSHGGKILPRAVDG-----NLKYVGGETRVVAVPREINFSELMKKLSTIDD 69 (316)
Q Consensus 20 VKllCSyGGrIlPRp~DG-----kLrYVGGeTRIVsV~R~isF~eL~~KLs~l~~ 69 (316)
-++++|-.|.|..- .|. .++-..|.+..|.|+.+.+..+|+.+|.+..+
T Consensus 87 ~r~~~s~dg~~y~T-~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~g 140 (189)
T 3q3f_A 87 DRILYSSDWLIYKT-TDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 140 (189)
T ss_dssp CEEEEETTCCEEEE-SCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC
T ss_pred cceEecCCCcEEEc-ccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccC
Confidence 48899999988864 554 25566899999999999999999999999887
No 55
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=41.32 E-value=34 Score=24.08 Aligned_cols=35 Identities=6% Similarity=0.049 Sum_probs=28.5
Q ss_pred ecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 42 VGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 42 VGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
..|.+..+.|..+.++.+|++++++..+- ...|-|
T Consensus 11 ~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~ 48 (79)
T 2uyz_B 11 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 48 (79)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 45777889999999999999999998873 355655
No 56
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=38.87 E-value=52 Score=24.78 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=25.5
Q ss_pred eeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 46 TRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 46 TRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
+..|.|+.+.+..+|+++|++..+. ...|-|
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 59 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYY 59 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 6678999999999999999998873 445555
No 57
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=38.66 E-value=40 Score=26.08 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=28.0
Q ss_pred ecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 42 VGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 42 VGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
..|.+..|.|+.+.+..+|+.++.+..+- ...|-|
T Consensus 43 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 80 (111)
T 3vdz_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE
Confidence 34677789999999999999999998874 344555
No 58
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=36.56 E-value=34 Score=25.53 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=27.0
Q ss_pred CceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 44 GETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 44 GeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
|.+..|.|+.+.+..+|++++++..+- ...|-|.
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA 63 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC
Confidence 456678999999999999999998873 3456554
No 59
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=36.06 E-value=43 Score=25.19 Aligned_cols=34 Identities=6% Similarity=0.065 Sum_probs=28.0
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
.|.+..|.|.++.++.+|+.++++..+. ...|-|
T Consensus 30 ~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif 66 (97)
T 1wyw_B 30 DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 66 (97)
T ss_dssp TCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 4677789999999999999999998873 355655
No 60
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.87 E-value=53 Score=24.90 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=24.5
Q ss_pred EEEecCCCCHHHHHHHHHhhcC---CceEEEEe
Q 021168 48 VVAVPREINFSELMKKLSTIDD---GDIVLKYQ 77 (316)
Q Consensus 48 IVsV~R~isF~eL~~KLs~l~~---~~~~LKYQ 77 (316)
.|.|+.+.+..+|+.+|.+..+ ....|-|.
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 62 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 5789999999999999999887 34566663
No 61
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=34.30 E-value=72 Score=23.65 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=28.0
Q ss_pred eecCceeEEEecCCCCHHHHHHHHHhh---cC---CceEEEE
Q 021168 41 YVGGETRVVAVPREINFSELMKKLSTI---DD---GDIVLKY 76 (316)
Q Consensus 41 YVGGeTRIVsV~R~isF~eL~~KLs~l---~~---~~~~LKY 76 (316)
-..|++..|.|+.+.+..+|+.++++. .+ ....|-|
T Consensus 7 ~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~ 48 (95)
T 1uel_A 7 TLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY 48 (95)
T ss_dssp ETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE
T ss_pred eCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE
Confidence 345777889999999999999999998 33 2455555
No 62
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=34.29 E-value=59 Score=22.67 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=26.3
Q ss_pred cCce-eEEE-ecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 43 GGET-RVVA-VPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 43 GGeT-RIVs-V~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
.|.+ ..|. |+.+.+..+|++++++..+- ...|-|
T Consensus 11 ~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~ 49 (78)
T 2faz_A 11 DGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY 49 (78)
T ss_dssp TSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 4555 3688 99999999999999998873 345555
No 63
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=34.12 E-value=99 Score=25.10 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=28.7
Q ss_pred eeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 40 KYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 40 rYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
+-..|++..+.|+.+.+..+|+.|+.+..+- ...|.|
T Consensus 102 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~ 141 (172)
T 3u30_A 102 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 141 (172)
T ss_dssp EESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred ecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEE
Confidence 3456888899999999999999999998873 334555
No 64
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=34.11 E-value=1.3e+02 Score=23.07 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=29.4
Q ss_pred eeecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 40 KYVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 40 rYVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
+...|++..+.|+.+.+..+|+.++.+..+- ...|-|
T Consensus 82 k~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~ 121 (152)
T 3b08_A 82 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121 (152)
T ss_dssp EESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred eecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEE
Confidence 4456888899999999999999999998773 345555
No 65
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=34.09 E-value=47 Score=24.50 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=26.2
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCCceEEEE
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDGDIVLKY 76 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~~~~LKY 76 (316)
.|.+..|.|+.+.+..+|+.++.+.......|-|
T Consensus 16 ~g~~~~~~v~~~~TV~~LK~~i~~~~~~~qrLi~ 49 (95)
T 1wia_A 16 NDTEELAVARPEDTVGTLKSKYFPGQESQMKLIY 49 (95)
T ss_dssp TTEEEEEEECSSSBHHHHHHHHSSSTTTTCEEEE
T ss_pred CCCEEEEEECCCCcHHHHHHHHHhhCcCcEEEEE
Confidence 3556778999999999999999987633455555
No 66
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=33.02 E-value=58 Score=25.19 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=29.7
Q ss_pred ecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 42 VGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 42 VGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
..|++..|.|+.+.+..+|+.++.+..+. ...|-|
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~ 80 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY 80 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 47899999999999999999999998873 455666
No 67
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=32.20 E-value=62 Score=25.84 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=26.7
Q ss_pred CceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 44 GETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 44 GeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
|.+..|.|+.+.+..+|+.+|.+..+. ...|-|+
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence 445678999999999999999998873 4556563
No 68
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=32.00 E-value=24 Score=27.02 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=24.4
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcC
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDD 69 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~ 69 (316)
+|++..|.|+.+.+..+|++++++..+
T Consensus 36 ~g~~~~l~v~~~~TV~~LK~~I~~~~g 62 (101)
T 3m63_B 36 GQDKWEVNVAPESTVLQFKEAINKANG 62 (101)
T ss_dssp SSCCCCBCCCTTSBHHHHHHHHHHHHS
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHC
Confidence 777778899999999999999999886
No 69
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.96 E-value=89 Score=24.42 Aligned_cols=27 Identities=11% Similarity=-0.007 Sum_probs=23.2
Q ss_pred CceeEEEecCCCCHHHHHHHHHhhcCC
Q 021168 44 GETRVVAVPREINFSELMKKLSTIDDG 70 (316)
Q Consensus 44 GeTRIVsV~R~isF~eL~~KLs~l~~~ 70 (316)
|++..|.|+.+.+..+|+++|.+..+-
T Consensus 18 Gk~~~v~v~~~~TV~~LK~~I~~~tgI 44 (100)
T 2dzm_A 18 DRNVDVVLEDTCTVGEIKQILENELQI 44 (100)
T ss_dssp SCEEEEEEETTSBHHHHHHHHHHHHCC
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCC
Confidence 455668899999999999999999873
No 70
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=31.92 E-value=1.5e+02 Score=23.47 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=28.0
Q ss_pred CceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 44 GETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 44 GeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
|++..|.|..+.+..+|++++++..+. ...|.|+
T Consensus 38 Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 38 GKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp SSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 566779999999999999999999873 4566665
No 71
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=30.88 E-value=82 Score=25.04 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=27.3
Q ss_pred eeecCceeEEEecCCCCHHHHHHHHHhhcCC
Q 021168 40 KYVGGETRVVAVPREINFSELMKKLSTIDDG 70 (316)
Q Consensus 40 rYVGGeTRIVsV~R~isF~eL~~KLs~l~~~ 70 (316)
+-.+|.+..|.|+.+.+..+|+.++.+..+-
T Consensus 8 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi 38 (159)
T 3rt3_B 8 KMLAGNEFQVSLSSSMSVSELKAQITQKIGV 38 (159)
T ss_dssp EETTSCEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred EECCCCEEEEEeCCCCcHHHHHHHHHHHhCC
Confidence 3457888999999999999999999999884
No 72
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=30.64 E-value=71 Score=24.24 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=25.6
Q ss_pred ceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 45 ETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 45 eTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
.+..|.|+.+.+..+|+.+|++..+. ...|-|
T Consensus 35 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 69 (101)
T 2klc_A 35 EKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF 69 (101)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 45568999999999999999998873 345555
No 73
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=29.26 E-value=71 Score=24.71 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=28.5
Q ss_pred ecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 42 VGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 42 VGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
..|.+..|.|+.+.+..+|++++++..+. ...|-|
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~ 45 (152)
T 3b08_A 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (152)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE
Confidence 35777889999999999999999998873 345555
No 74
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=28.08 E-value=96 Score=23.73 Aligned_cols=31 Identities=16% Similarity=0.369 Sum_probs=24.8
Q ss_pred eeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 46 TRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 46 TRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
+--+.|+.+.+..+|+.||.+..|. ...|-|
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~ 62 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQV 62 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEE
Confidence 5567899999999999999999983 344544
No 75
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=27.23 E-value=44 Score=27.46 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=50.3
Q ss_pred CCCceeeecCce--eEEEecCCCCHHHHHHHHHhhcC-CceEE----EE-----------ecCCCCCC-ceeeccChHHH
Q 021168 35 VDGNLKYVGGET--RVVAVPREINFSELMKKLSTIDD-GDIVL----KY-----------QLIPEDLD-SLVSVRNDEDV 95 (316)
Q Consensus 35 ~DGkLrYVGGeT--RIVsV~R~isF~eL~~KLs~l~~-~~~~L----KY-----------QLPgEDLD-aLISVssDEDL 95 (316)
+--.|.|-|-.+ .|.+|=|...+.+++..|.++.+ ..+++ -| |.=|-.-. .|--|.+||++
T Consensus 11 ~~~~~~~~~~~~~~lI~aIIrP~kld~V~daL~~~~gi~G~TvseV~G~Grqkg~~S~~E~yrG~epKvkiEivv~d~~v 90 (120)
T 3ce8_A 11 HHENLYFQGMSTEQLLVLIAQNDIKDDIVDTLIELEFLSGFSLGNICGFSREHSHFNIKEQVEGYREFCKFEIMHPAAQQ 90 (120)
T ss_dssp ---------CCSEEEEEEEEEGGGHHHHHHHHTTCTTCCCCEEEEEEEEECC-----------EEEEEEEEEEEEEGGGH
T ss_pred cccceeecCCccceEEEEEeCHHHHHHHHHHHHhCCCCCcEEEEeeEEeCCCCCCCCceeEEecCCceEEEEEEECHHHH
Confidence 334566666544 46788899999999999999733 11111 11 11111112 23446678899
Q ss_pred HHHHHHHHhcCCCCCCcEEEEEccCCC
Q 021168 96 KHMMEEYDRHGSEGTPRLRAFLFPSTP 122 (316)
Q Consensus 96 ~nMmeEYdrl~~~~s~RLRvFLFp~~p 122 (316)
+.+++.-.+... .+++++|+.|...
T Consensus 91 e~vv~aI~~~a~--tg~IKIfV~pVe~ 115 (120)
T 3ce8_A 91 AALLTALALVCK--HNPCRYWIMPIYQ 115 (120)
T ss_dssp HHHHHHHHHHTT--TSCCEEEEEECSC
T ss_pred HHHHHHHHHHcC--CCCEEEEEEEhHH
Confidence 999998877654 6788999999754
No 76
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=32.67 E-value=14 Score=25.87 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=25.6
Q ss_pred eeecCceeEEEecCCCCHHHHHHHHHhhcC
Q 021168 40 KYVGGETRVVAVPREINFSELMKKLSTIDD 69 (316)
Q Consensus 40 rYVGGeTRIVsV~R~isF~eL~~KLs~l~~ 69 (316)
+...|++..|.|+.+.+..+|+.++++..+
T Consensus 6 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~g 35 (76)
T 3b1l_X 6 RFNSSYGFPVEVDSDTSILQLKEVVAKQQG 35 (76)
Confidence 345678888999999999999999998876
No 77
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=26.30 E-value=66 Score=24.46 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=23.9
Q ss_pred EEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 48 VVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 48 IVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
.|.|+.+.+..+|++++++..+. ...|-|
T Consensus 35 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 66 (100)
T 1yqb_A 35 DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 66 (100)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 57899999999999999998873 345555
No 78
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=24.58 E-value=78 Score=24.21 Aligned_cols=34 Identities=18% Similarity=0.081 Sum_probs=27.7
Q ss_pred cCceeEEEecC-CCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 43 GGETRVVAVPR-EINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 43 GGeTRIVsV~R-~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
+|.+..|.|+. +.+..+|+.++.+..+. ...|-|
T Consensus 39 ~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~ 76 (111)
T 1we6_A 39 DGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG 76 (111)
T ss_dssp SSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC
T ss_pred CCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE
Confidence 57777899997 99999999999999873 345555
No 79
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.19 E-value=98 Score=25.64 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=44.4
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEcc
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFP 119 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp 119 (316)
+|+...|.|+.+.+..+|+.++++.++. ..+|-|. |-- +.++| -+++|.--. ..-|-|-+|.
T Consensus 25 ~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~--GKi------LKD~e----TL~~~gIk~---g~TIhLvi~s 89 (118)
T 2daf_A 25 VGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS--GKI------LKNNE----TLVQHGVKP---QEIVQVEIFS 89 (118)
T ss_dssp TCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET--TEE------ECSSC----CHHHHSCCS---SCEEEEEEEE
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC--CeE------cCCcc----hHHHcCCCC---CCEEEEEEec
Confidence 4567788999999999999999999873 4667775 211 11222 234554222 3678888888
Q ss_pred CCCc
Q 021168 120 STPV 123 (316)
Q Consensus 120 ~~p~ 123 (316)
.+|.
T Consensus 90 ~~p~ 93 (118)
T 2daf_A 90 TNPD 93 (118)
T ss_dssp SCTT
T ss_pred CCCc
Confidence 7764
No 80
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=23.20 E-value=2.8e+02 Score=21.97 Aligned_cols=40 Identities=5% Similarity=0.123 Sum_probs=28.1
Q ss_pred CceeEEEecCCCCHHHHHHHHHhhcCCc-eEEEEecCCCCC
Q 021168 44 GETRVVAVPREINFSELMKKLSTIDDGD-IVLKYQLIPEDL 83 (316)
Q Consensus 44 GeTRIVsV~R~isF~eL~~KLs~l~~~~-~~LKYQLPgEDL 83 (316)
|++-.+.|.++.+|..|+.+.++..+.+ -.+++-.-|+-|
T Consensus 36 g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L 76 (110)
T 2k8h_A 36 GAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPI 76 (110)
T ss_dssp SCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBC
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc
Confidence 4556789999999999999999987732 133443345543
No 81
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=23.07 E-value=39 Score=26.87 Aligned_cols=35 Identities=6% Similarity=0.093 Sum_probs=25.1
Q ss_pred cCceeEEEecCCCCHHHHHHHHHhhcC---CceEEEEe
Q 021168 43 GGETRVVAVPREINFSELMKKLSTIDD---GDIVLKYQ 77 (316)
Q Consensus 43 GGeTRIVsV~R~isF~eL~~KLs~l~~---~~~~LKYQ 77 (316)
|+..+.|.|+.++++++|+..|.+--. ...+|.+.
T Consensus 3 g~~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~ 40 (98)
T 1y8x_B 3 SQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITAT 40 (98)
T ss_dssp --CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEE
T ss_pred CCCcEEEEECCchhHHHHHHHHHhChHhhccCCeeeee
Confidence 567888999999999999999988432 24455554
No 82
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=22.71 E-value=1e+02 Score=24.55 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=29.0
Q ss_pred eecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEE
Q 021168 41 YVGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKY 76 (316)
Q Consensus 41 YVGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKY 76 (316)
-..|++..|.|+.+.+..+|+.++.+..+- ...|-|
T Consensus 88 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~ 126 (159)
T 3rt3_B 88 NNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 126 (159)
T ss_dssp CTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE
Confidence 347889999999999999999999988773 345555
No 83
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=22.33 E-value=90 Score=24.68 Aligned_cols=36 Identities=25% Similarity=0.111 Sum_probs=30.6
Q ss_pred ecCceeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 42 VGGETRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 42 VGGeTRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
.+|.+..|.|..+-+-.+|++++++..|- ...|+|+
T Consensus 29 ~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~ 67 (93)
T 3plu_A 29 RLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG 67 (93)
T ss_dssp TTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC
Confidence 47888889999999999999999998883 4578774
No 84
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=21.76 E-value=2.3e+02 Score=25.05 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=36.3
Q ss_pred ecCCCCHHHHHHHHH---hhc-CCc--eEEEEecCCCCCCceeeccChHHHHHHHHHHHhcCCCCCCcEEEEEccCCC
Q 021168 51 VPREINFSELMKKLS---TID-DGD--IVLKYQLIPEDLDSLVSVRNDEDVKHMMEEYDRHGSEGTPRLRAFLFPSTP 122 (316)
Q Consensus 51 V~R~isF~eL~~KLs---~l~-~~~--~~LKYQLPgEDLDaLISVssDEDL~nMmeEYdrl~~~~s~RLRvFLFp~~p 122 (316)
+.|..++.+++..+. +.+ +-. ..|-+=+|+| ++||++.+++.-.++. ..++.+|.|...|
T Consensus 132 m~r~~t~e~~~~~i~~l~~~~~gi~i~~~~IvG~PgE---------t~ed~~~t~~~l~~l~---~~~v~~~~~~p~p 197 (304)
T 2qgq_A 132 MGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGE---------TEEDFEELKQFVEEIQ---FDKLGAFVYSDEE 197 (304)
T ss_dssp TTCCSCHHHHHHHHHHHHHHCTTCEEEEEEEECCTTC---------CHHHHHHHHHHHHHHC---CSEEEEEECCC--
T ss_pred hCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEeCCCC---------CHHHHHHHHHHHHHcC---CCEEEEEEeeCCC
Confidence 345566666554444 432 212 2344556885 5899999999888775 4577777776554
No 85
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=21.38 E-value=67 Score=25.78 Aligned_cols=38 Identities=13% Similarity=0.257 Sum_probs=23.8
Q ss_pred HHHHHHHhhcCCceEEEEecCCCCCCcee-ec----cChHHHHHHHHHHHh
Q 021168 59 ELMKKLSTIDDGDIVLKYQLIPEDLDSLV-SV----RNDEDVKHMMEEYDR 104 (316)
Q Consensus 59 eL~~KLs~l~~~~~~LKYQLPgEDLDaLI-SV----ssDEDL~nMmeEYdr 104 (316)
+.+++|+.+|..+. +++.+|| |. -+||||+.++++-.+
T Consensus 67 ~~~a~IanL~P~~~--------dElrali~s~e~~~~~deeL~~IL~~l~k 109 (113)
T 4ayb_F 67 DVRAVLASICPITP--------DEVRSILIMDSNRTYTSEDIQKIIDIIRK 109 (113)
T ss_dssp HHHHHHHHHCCCSS--------CCCCTTTTTTCCCCCCCTHHHHHHHHC--
T ss_pred HHHHHHHHcCCCCH--------HHHHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence 34456666665432 5677776 33 379999999987543
No 86
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.04 E-value=1.2e+02 Score=23.11 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=19.6
Q ss_pred ceeEEEecC---------CCCHHHHHHHHHhhc
Q 021168 45 ETRVVAVPR---------EINFSELMKKLSTID 68 (316)
Q Consensus 45 eTRIVsV~R---------~isF~eL~~KLs~l~ 68 (316)
.+..|.|+. +.+..+|++++.+..
T Consensus 26 ~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~ 58 (107)
T 1x1m_A 26 PKSILQLPETELGEYSLGGYSISFLKQLIAGKL 58 (107)
T ss_dssp CCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHC
T ss_pred cEEEEEecCccccccCcccCCHHHHHHHHHHHh
Confidence 566677544 499999999999988
No 87
>3nku_A DRRA, SIDM; posttranslational modification, ampylation, adenylylation, R RAB1, vesicular transport, protein transport; HET: MSE PGE; 2.10A {Legionella pneumophila subsp}
Probab=20.89 E-value=50 Score=29.14 Aligned_cols=25 Identities=44% Similarity=0.709 Sum_probs=20.0
Q ss_pred CCCCceeeccChHHHHHHHHHHHhc
Q 021168 81 EDLDSLVSVRNDEDVKHMMEEYDRH 105 (316)
Q Consensus 81 EDLDaLISVssDEDL~nMmeEYdrl 105 (316)
.|||+.|-|.+|||++..---+|.+
T Consensus 104 sdldafvivkndedikkvkpvfdal 128 (213)
T 3nku_A 104 SDLDAFVIVKNDEDIKKVKPVFDAL 128 (213)
T ss_dssp CCCEEEEECSSTHHHHHHHHHHHHH
T ss_pred cccceEEEecchhhhhhhhhHHHHH
Confidence 3899999999999998875555543
No 88
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=20.79 E-value=88 Score=24.02 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=21.4
Q ss_pred CceeEEEec-CCCCHHHHHHHHHhhcCC
Q 021168 44 GETRVVAVP-REINFSELMKKLSTIDDG 70 (316)
Q Consensus 44 GeTRIVsV~-R~isF~eL~~KLs~l~~~ 70 (316)
|..| |.|+ .+.++.+|+.||.+.++.
T Consensus 17 G~~~-v~v~~~~~Tv~~LK~kI~~~~gi 43 (107)
T 1wf9_A 17 GLER-VSVDGPHITVSQLKTLIQDQLQI 43 (107)
T ss_dssp CEEE-EEECCTTSBHHHHHHHHHHHSCC
T ss_pred CCEE-EEECCCCCcHHHHHHHHHHHhCc
Confidence 4443 6799 999999999999998873
No 89
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.49 E-value=1.6e+02 Score=21.49 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=24.2
Q ss_pred eeEEEecCCCCHHHHHHHHHhhc--C---CceEEEEe
Q 021168 46 TRVVAVPREINFSELMKKLSTID--D---GDIVLKYQ 77 (316)
Q Consensus 46 TRIVsV~R~isF~eL~~KLs~l~--~---~~~~LKYQ 77 (316)
+.-|.|+.+.+..+|+++|++.. + ....|-|.
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~ 57 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS 57 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC
Confidence 55667789999999999999987 5 23455553
No 90
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=20.37 E-value=1.2e+02 Score=23.33 Aligned_cols=32 Identities=9% Similarity=0.090 Sum_probs=25.7
Q ss_pred eeEEEecCCCCHHHHHHHHHhhcCC---ceEEEEe
Q 021168 46 TRVVAVPREINFSELMKKLSTIDDG---DIVLKYQ 77 (316)
Q Consensus 46 TRIVsV~R~isF~eL~~KLs~l~~~---~~~LKYQ 77 (316)
+--+.|+.+++..+|++||.+..|. ...|-|.
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~ 62 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY 62 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 4558899999999999999999983 4556554
Done!