BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021170
(316 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q949P3|Y2734_ARATH Uncharacterized protein At2g17340 OS=Arabidopsis thaliana
GN=At2g17340 PE=1 SV=1
Length = 367
Score = 535 bits (1378), Expect = e-151, Method: Compositional matrix adjust.
Identities = 267/367 (72%), Positives = 292/367 (79%), Gaps = 51/367 (13%)
Query: 1 MESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRA 60
MES+SE+VPFP LP PIE NYRACTIPYRFP+D+PKK T EI+W+++F NSIPSFKKRA
Sbjct: 1 MESDSEMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRA 60
Query: 61 ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIF 120
ESD TVPDA RAEKFA+RY+ ILED+KKDPE+HGGPPD ILLCRLREQVLRELGFRDIF
Sbjct: 61 ESDITVPDAPARAEKFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIF 120
Query: 121 KKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDG 180
KKVKDEENAKAISLF VV L+D IED+GKR+E+L+RGIFAGNIFDLGSAQLAEVFS+DG
Sbjct: 121 KKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDG 180
Query: 181 MSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRR 240
MSFLASCQNLVPRPWVIDDLE F+ KW K+WKKAVIFVDNSGADIILGILPFARELLRR
Sbjct: 181 MSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRR 240
Query: 241 GTQ---------------------------------------------------VIDLTA 249
G Q VIDL+
Sbjct: 241 GAQVVLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSR 300
Query: 250 VSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVF 309
VSQELAYL+SDADLVI+EGMGRGIETNLYAQFKCDSLKIGMVKH EVA+FLGGRLYDCVF
Sbjct: 301 VSQELAYLSSDADLVIVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVF 360
Query: 310 KYNEVSS 316
K+NEV S
Sbjct: 361 KFNEVQS 367
>sp|Q5R5F8|PANK4_PONAB Pantothenate kinase 4 OS=Pongo abelii GN=PANK4 PE=2 SV=1
Length = 773
Score = 167 bits (423), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 111/323 (34%), Positives = 161/323 (49%), Gaps = 58/323 (17%)
Query: 45 WLDLFLNSIPSFKKRA-ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILL 103
WL F ++ KRA S P DA RAEKF Q+Y L+ +++ P +G LL
Sbjct: 448 WLTCFEEALDGVVKRAVASQPDSVDAAERAEKFRQKYWNKLQTLRQQPFAYGTLTVRSLL 507
Query: 104 CRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGN 163
RE L E F D + KVK EN A+ F VVR D + E +++ +L++G+ AGN
Sbjct: 508 -DTREHCLNEFNFPDPYSKVKQRENGVALRCFPGVVRSLDALGWEERQL-ALVKGLLAGN 565
Query: 164 IFDLGSAQLAEVFSKD-GMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNS 222
+FD G+ +++V D F + + L RPW++D + + K A+IF DNS
Sbjct: 566 VFDWGAKAVSDVLESDPCFGFEEAKRKLQERPWLVDSYSEWLQRLKGPPHKCALIFADNS 625
Query: 223 GADIILGILPFARELLRRGTQVI------------------------------------- 245
G DIILG+ PF RELL RGT+VI
Sbjct: 626 GIDIILGVFPFVRELLLRGTEVILACNSGPALNDVTHSESLIVAERIAGMDPVVHSALRE 685
Query: 246 ---------------DLTAVSQELAYLASD--ADLVILEGMGRGIETNLYAQFKCDSLKI 288
DL+ + + LA L + ADLV++EGMGR + TN +A +C+SLK+
Sbjct: 686 ERLLLVQTGSSSPCLDLSRLDKGLAALVRERGADLVVIEGMGRAVHTNYHAALRCESLKL 745
Query: 289 GMVKHPEVAQFLGGRLYDCVFKY 311
++K+ +A+ LGGRL+ +FKY
Sbjct: 746 AVIKNAWLAERLGGRLFSVIFKY 768
>sp|Q9NVE7|PANK4_HUMAN Pantothenate kinase 4 OS=Homo sapiens GN=PANK4 PE=1 SV=1
Length = 773
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/323 (34%), Positives = 160/323 (49%), Gaps = 58/323 (17%)
Query: 45 WLDLFLNSIPSFKKRA-ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILL 103
WL F ++ KRA S P DA RAEKF Q+Y L+ +++ P +G LL
Sbjct: 448 WLTCFEEALDGVVKRAVASQPDSVDAAERAEKFRQKYWNKLQTLRQQPFAYGTLTVRSLL 507
Query: 104 CRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGN 163
RE L E F D + KVK EN A+ F VVR D + E +++ +L++G+ AGN
Sbjct: 508 -DTREHCLNEFNFPDPYSKVKQRENGVALRCFPGVVRSLDALGWEERQL-ALVKGLLAGN 565
Query: 164 IFDLGSAQLAEVFSKD-GMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNS 222
+FD G+ ++ V D F + + L RPW++D + + K A+IF DNS
Sbjct: 566 VFDWGAKAVSAVLESDPYFGFEEAKRKLQERPWLVDSYSEWLQRLKGPPHKCALIFADNS 625
Query: 223 GADIILGILPFARELLRRGTQVI------------------------------------- 245
G DIILG+ PF RELL RGT+VI
Sbjct: 626 GIDIILGVFPFVRELLLRGTEVILACNSGPALNDVTHSESLIVAERIAGMDPVVHSALQE 685
Query: 246 ---------------DLTAVSQELAYLASD--ADLVILEGMGRGIETNLYAQFKCDSLKI 288
DL+ + + LA L + ADLV++EGMGR + TN +A +C+SLK+
Sbjct: 686 ERLLLVQTGSSSPCLDLSRLDKGLAALVRERGADLVVIEGMGRAVHTNYHAALRCESLKL 745
Query: 289 GMVKHPEVAQFLGGRLYDCVFKY 311
++K+ +A+ LGGRL+ +FKY
Sbjct: 746 AVIKNAWLAERLGGRLFSVIFKY 768
>sp|Q4R4U1|PANK4_MACFA Pantothenate kinase 4 OS=Macaca fascicularis GN=PANK4 PE=2 SV=2
Length = 773
Score = 165 bits (418), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 111/323 (34%), Positives = 160/323 (49%), Gaps = 58/323 (17%)
Query: 45 WLDLFLNSIPSFKKRA-ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILL 103
WL F ++ KRA S P DA RAEKF Q+Y L+ +++ P +G LL
Sbjct: 448 WLTCFEEALDGVVKRAVASQPDSVDAAERAEKFRQKYWNKLQTLRQQPFAYGTLTVRSLL 507
Query: 104 CRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGN 163
RE L E F D + KVK EN A+ F VVR D + E +++ +L++G+ AGN
Sbjct: 508 -DTREHCLNEFNFPDPYSKVKQRENGVALRCFPGVVRSLDTLGWEERQL-ALVKGLLAGN 565
Query: 164 IFDLGSAQLAEVFSKD-GMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNS 222
+FD G+ +++V D F + + L RPW++D + + K A+IF DNS
Sbjct: 566 VFDWGAKAVSDVLESDPYFGFEEAKRKLQERPWLVDSYSEWLQRLKGPPHKCALIFADNS 625
Query: 223 GADIILGILPFARELLRRGTQVI------------------------------------- 245
G DIILG+ PF RELL RGT+VI
Sbjct: 626 GIDIILGVFPFVRELLLRGTEVILACNSGPALNDVTHGESLIVAERIAGMDPVVHSALRE 685
Query: 246 ---------------DLTAVSQELAYLASD--ADLVILEGMGRGIETNLYAQFKCDSLKI 288
DL+ + + LA L + ADLV++EGMGR + TN +A C+SLK+
Sbjct: 686 ERLLLVQTGSSSPCLDLSRLDKGLAALVRERGADLVVIEGMGRAVHTNYHAALCCESLKL 745
Query: 289 GMVKHPEVAQFLGGRLYDCVFKY 311
++K+ +A+ LGGRL+ +FKY
Sbjct: 746 AVIKNAWLAERLGGRLFSVIFKY 768
>sp|Q923S8|PANK4_RAT Pantothenate kinase 4 OS=Rattus norvegicus GN=Pank4 PE=1 SV=1
Length = 773
Score = 161 bits (408), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 109/323 (33%), Positives = 159/323 (49%), Gaps = 58/323 (17%)
Query: 45 WLDLFLNSIPSFKKRA-ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILL 103
WL F ++ KRA S P DA RAEKF Q+Y L+ ++ P +G LL
Sbjct: 448 WLTCFEEALDGVVKRAVASQPESVDAAERAEKFRQKYWGKLQTLRHQPFAYGTLTVRSLL 507
Query: 104 CRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGN 163
RE L E F D + KVK +EN A+ F V R D + E +++ +L++G+ AGN
Sbjct: 508 -DTREHCLNEFNFPDPYSKVKQKENGLALKCFQSVTRSLDSLGWEERQL-ALVKGLLAGN 565
Query: 164 IFDLGSAQLAEVFSKD-GMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNS 222
+FD G+ +++V D F + + L RPW++D + + K A+IF DNS
Sbjct: 566 VFDWGAKAVSDVLESDPQFGFEEAKRKLQERPWLVDSYTKWLQRLKGPPHKCALIFADNS 625
Query: 223 GADIILGILPFARELLRRGTQVI------------------------------------- 245
G DIILG+ PF RELL RG +VI
Sbjct: 626 GIDIILGVFPFVRELLCRGIEVILACNSGPALNDVTYSESLIVAERIAAMDPIICTALRE 685
Query: 246 ---------------DLTAVSQELAYLASD--ADLVILEGMGRGIETNLYAQFKCDSLKI 288
DL+ + + LA L + ADLV++EGMGR + TN +A +C+SLK+
Sbjct: 686 DRLLLVQTGSSPPCLDLSRLDKGLAVLVRERGADLVVIEGMGRAVHTNYHALLRCESLKL 745
Query: 289 GMVKHPEVAQFLGGRLYDCVFKY 311
+VK+ +A+ LGG+L+ +FKY
Sbjct: 746 AVVKNAWLAERLGGQLFSVIFKY 768
>sp|Q80YV4|PANK4_MOUSE Pantothenate kinase 4 OS=Mus musculus GN=Pank4 PE=1 SV=2
Length = 820
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 111/203 (54%), Gaps = 4/203 (1%)
Query: 45 WLDLFLNSIPSFKKRA-ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILL 103
WL F ++ KRA S P DA RAEKF Q+Y L+ ++ P +G LL
Sbjct: 448 WLTCFEEALDGVVKRAVASQPESMDAVERAEKFRQKYWGKLQTLRHQPFAYGTLTVRSLL 507
Query: 104 CRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGN 163
RE L E F D + KVK +EN A+ F V R D + E +++ +L++G+ AGN
Sbjct: 508 -DTREHCLNEFNFPDPYSKVKQKENGLALKCFQSVTRSLDSLGWEERQL-ALVKGLLAGN 565
Query: 164 IFDLGSAQLAEVFSKD-GMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNS 222
+FD G+ +++V D F + + L RPW++D + + K A+IF DNS
Sbjct: 566 VFDWGAKAVSDVLESDPQFGFEEAKRKLQERPWLVDSYTKWLQRLKGPPHKCALIFADNS 625
Query: 223 GADIILGILPFARELLRRGTQVI 245
G DIILG+ PF RELL RGT+VI
Sbjct: 626 GIDIILGVFPFVRELLFRGTEVI 648
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 40/51 (78%)
Query: 261 ADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKY 311
ADLV++EGMGR I TN +A +C+SLK+ +VK+ +A+ LGG+L+ +FKY
Sbjct: 765 ADLVVIEGMGRAIHTNYHALLRCESLKLAVVKNAWLAERLGGQLFSVIFKY 815
>sp|Q8L5Y9|PANK2_ARATH Pantothenate kinase 2 OS=Arabidopsis thaliana GN=At4g32180 PE=1
SV=2
Length = 901
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 130/252 (51%), Gaps = 24/252 (9%)
Query: 6 ELVP----FPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRA- 60
LVP FPLL P Y TI +D ++ WL + +P A
Sbjct: 517 HLVPTLEVFPLLADP--KTYEPNTIDL---SDQGEREY-----WLKVLSEHLPDLVDTAV 566
Query: 61 ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIF 120
S+ DA R + FA+ +S L + ++P +G LL LRE+ LRE F D +
Sbjct: 567 ASEGGTEDAKRRGDAFARAFSAHLARLMEEPAAYGKLGLANLL-ELREECLREFQFVDAY 625
Query: 121 KKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDG 180
+ +K EN ++++ D++ D + +E R+ +LI G+ A NIFD GS +++ K
Sbjct: 626 RSIKQRENEASLAVLPDLLEELDSMSEEA-RLLTLIEGVLAANIFDWGSRACVDLYHKGT 684
Query: 181 M-SFLASCQNLVPRPWVIDDLETFKVKWSKKA------WKKAVIFVDNSGADIILGILPF 233
+ +N + RPW +DD + FK + K+A++FVDNSGAD+ILG+LP
Sbjct: 685 IIEIYRMSRNKMQRPWRVDDFDAFKERMLGSGGKQPHRHKRALLFVDNSGADVILGMLPL 744
Query: 234 ARELLRRGTQVI 245
ARE LRRGT+V+
Sbjct: 745 AREFLRRGTEVV 756
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 241 GTQVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQ-F 299
G+ IDL VS ELA A DADLV+LEGMGR + TN AQF+C++LK+ MVK+ +A+
Sbjct: 825 GSPCIDLRQVSSELAAAAKDADLVVLEGMGRALHTNFNAQFQCEALKLAMVKNQRLAEKL 884
Query: 300 LGGRLYDCVFKY 311
+ G +YDCV +Y
Sbjct: 885 IKGNIYDCVCRY 896
>sp|Q3AFQ0|SECA_CARHZ Protein translocase subunit SecA OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=secA PE=3
SV=1
Length = 874
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 29/151 (19%)
Query: 95 GGPPDCILLCRLRE---------QVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVI 145
GG P+ + L LR+ ++ REL + +KK+ DEE+ K + L G + +
Sbjct: 496 GGNPEFLALQELRKMGKTPEDDPELYRELLAK--YKKITDEEHKKVVELGG--LHIIGTE 551
Query: 146 EDEGKRVESLIRGIFAGNIFDLGSAQ--------LAEVFSKDGMSFLASCQNL-----VP 192
E +R+++ +RG AG D GS+Q L +F D ++ L L +
Sbjct: 552 RHESRRIDNQLRG-RAGRQGDPGSSQFFISLEDDLMRLFGSDNIAGLMDRLGLDEDTPIE 610
Query: 193 RPWVIDDLETFKVKWSKKAW--KKAVIFVDN 221
P + +ET + + + + +K V+ DN
Sbjct: 611 HPLITRSIETAQKRVENRNFEIRKHVLEYDN 641
>sp|Q9P7R0|ARO1_SCHPO Pentafunctional AROM polypeptide OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=aro1 PE=3 SV=1
Length = 1573
Score = 35.8 bits (81), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 267 EGMGRGIETNLYAQ-FKCDSLKIGMVKHPEVAQFLG-------GRLYDCVFKYN 312
+G E LY Q + + IGMVK E+A++LG GRL C+ YN
Sbjct: 271 HSIGHAYEAILYPQILHGECVAIGMVKEAELARYLGILKPNAVGRLTKCLVSYN 324
>sp|P26578|NCAP_MACHU Nucleoprotein OS=Machupo virus GN=N PE=3 SV=1
Length = 564
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 24/164 (14%)
Query: 53 IPSFK-----KRAESD--PTVP-----DAHVRAEKFA-QRYSEILEDMKKDPETHGGPPD 99
IPSF+ +R S PTV DA + A+ + S++ ++K+ G D
Sbjct: 7 IPSFRWTQSLRRGLSQVHPTVKTDVLKDAKLIADSIDFNQVSQVQRALRKNKR---GEED 63
Query: 100 CILLCRLREQVLRELGFRDIFK----KVKDEENAKAISLFGDVVRLNDVIEDEGKRVESL 155
L L ++V R + + I K K+ D + + L D+ +L + I KR ES
Sbjct: 64 LNKLRDLNKEVDRLMSMKSIQKNTIFKIGDLGRDELMELASDLEKLKNKI----KRTESG 119
Query: 156 IRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDD 199
+G++ GN+ L + +E+ G N V R W + D
Sbjct: 120 PQGLYMGNLSQLQLTKRSEILKTLGFQQQRGAGNGVVRIWDVSD 163
>sp|Q3J5V6|PCKA_RHOS4 Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=pckA PE=3 SV=1
Length = 532
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 41 TEIAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDC 100
TE+AW LF+ + +RAE D VPD V K DPE HG D
Sbjct: 127 TELAWHGLFIRHMLRRPERAELDSFVPDWTVIN----------CPSFKADPERHGCRTDT 176
Query: 101 ILLCRLREQVL 111
+++ +++
Sbjct: 177 VIVLNFERKLI 187
>sp|A3PGG3|PCKA_RHOS1 Phosphoenolpyruvate carboxykinase [ATP] OS=Rhodobacter sphaeroides
(strain ATCC 17029 / ATH 2.4.9) GN=pckA PE=3 SV=1
Length = 532
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 41 TEIAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDC 100
TE+AW LF+ + +RAE D VPD V K DPE HG D
Sbjct: 127 TELAWHGLFIRHMLRRPERAELDSFVPDWTVIN----------CPSFKADPERHGCRTDT 176
Query: 101 ILLCRLREQVL 111
+++ +++
Sbjct: 177 VIVLNFERKLI 187
>sp|O66442|ARGD_AQUAE Acetylornithine aminotransferase OS=Aquifex aeolicus (strain VF5)
GN=argD PE=1 SV=1
Length = 376
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 144 VIEDEGKRVESLIRGIFAGNIFDLGSA--QLAEVFSKDGMSFLASCQNLVPRPWVIDDLE 201
+ ++EGK + GI + LG A +L E K+ + L NL PW E
Sbjct: 23 LYDEEGKEYLDFVSGI---GVNSLGHAYPKLTEAL-KEQVEKLLHVSNLYENPWQ----E 74
Query: 202 TFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLR 239
K K W + +F NSG + + + AR+ R
Sbjct: 75 ELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWR 112
>sp|Q72DW3|COBQ_DESVH Cobyric acid synthase OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=cobQ PE=3
SV=1
Length = 543
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 257 LASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGG 302
LA+D D+++LEG G E NL A D + + M +H E L G
Sbjct: 125 LAADVDVMVLEGAGSPAEVNLKAH---DIVNMAMARHAEAKVLLVG 167
>sp|A1VFG1|COBQ_DESVV Cobyric acid synthase OS=Desulfovibrio vulgaris subsp. vulgaris
(strain DP4) GN=cobQ PE=3 SV=1
Length = 539
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 257 LASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGG 302
LA+D D+++LEG G E NL A D + + M +H E L G
Sbjct: 125 LAADVDVMVLEGAGSPAEVNLKAH---DIVNMAMARHAEAKVLLVG 167
>sp|Q92GB7|DPO1_RICCN DNA polymerase I OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=polA PE=3 SV=1
Length = 875
Score = 31.6 bits (70), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 65/164 (39%), Gaps = 21/164 (12%)
Query: 111 LRELGFRDIFKKVKDEENAK-------AISLFGDVVRLNDVIEDEGKRVESLIRGIFAGN 163
L+E GFR ++K+V++ + K A S ++ LN+ E E+ GIF
Sbjct: 271 LQEYGFRSLYKRVENLLDIKINDHKEIADSKVTEIKELNNANELADFAKEATKIGIFGIY 330
Query: 164 IFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIF---VD 220
+ A LA + S S++ N DL ++ K S W +IF D
Sbjct: 331 LLQHKGANLAFILSLQNQSYIIKISN------TSHDLFSYNTK-SNNNWFSDIIFNLLTD 383
Query: 221 NSGADIILGILPFARELLRRGTQVIDLTAVSQ-ELAYLASDADL 263
S I + P L Q D+TA+ EL A A L
Sbjct: 384 KSIKKITYSLKPL---LKFYANQSHDITAIEDLELMQYALSAGL 424
>sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum
GN=CAD1-A PE=2 SV=1
Length = 555
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 75 KFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFR---DIFKKVKDEENAKA 131
F + + LE++ +D + D + LR ++LRE GF D F K KDE
Sbjct: 87 HFEKEIEDELENIYRDTNNNDADTD-LYTTALRFRLLREHGFDISCDAFNKFKDEAGNFK 145
Query: 132 ISLFGDVVRLNDVIEDEGKRVE 153
SL DV L ++ E RV
Sbjct: 146 ASLTSDVQGLLELYEASYMRVH 167
>sp|Q9KCI0|COBQ_BACHD Cobyric acid synthase OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=cobQ PE=3
SV=1
Length = 501
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 247 LTAVSQELAYLASDADLVILEGMGRGIETNL 277
L A+ Q LA L+ D+V++EG G +E NL
Sbjct: 112 LEAIKQALATLSQSFDMVVIEGAGSPVEVNL 142
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,280,202
Number of Sequences: 539616
Number of extensions: 5276699
Number of successful extensions: 13417
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 13379
Number of HSP's gapped (non-prelim): 36
length of query: 316
length of database: 191,569,459
effective HSP length: 117
effective length of query: 199
effective length of database: 128,434,387
effective search space: 25558443013
effective search space used: 25558443013
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)