Query 021170
Match_columns 316
No_of_seqs 164 out of 303
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02902 pantothenate kinase 100.0 3.2E-80 7E-85 644.1 27.6 299 4-315 494-875 (876)
2 KOG4584 Uncharacterized conser 100.0 2.1E-79 4.5E-84 572.4 24.5 290 20-309 5-348 (348)
3 COG1578 Uncharacterized conser 100.0 3.4E-50 7.4E-55 372.3 20.9 235 44-311 6-284 (285)
4 PF01937 DUF89: Protein of unk 100.0 6.4E-40 1.4E-44 318.8 17.0 250 43-307 3-354 (355)
5 KOG3870 Uncharacterized conser 98.7 5.3E-07 1.1E-11 88.9 15.6 165 103-271 119-362 (434)
6 cd01080 NAD_bind_m-THF_DH_Cycl 89.1 0.81 1.7E-05 40.6 5.3 51 211-266 43-93 (168)
7 PF06838 Met_gamma_lyase: Meth 76.0 0.92 2E-05 45.4 0.2 118 103-222 55-198 (403)
8 cd05212 NAD_bind_m-THF_DH_Cycl 73.5 4.2 9E-05 35.1 3.6 53 211-268 27-79 (140)
9 PRK14175 bifunctional 5,10-met 70.6 7.4 0.00016 37.6 5.0 51 211-266 157-207 (286)
10 COG4019 Uncharacterized protei 70.6 11 0.00024 32.6 5.4 63 199-269 25-102 (156)
11 cd03146 GAT1_Peptidase_E Type 67.5 19 0.00042 32.6 6.8 68 201-271 21-90 (212)
12 PF03698 UPF0180: Uncharacteri 65.6 9.9 0.00021 30.0 3.9 34 233-271 13-46 (80)
13 cd03129 GAT1_Peptidase_E_like 57.9 52 0.0011 29.5 7.8 59 211-271 28-90 (210)
14 PF02882 THF_DHG_CYH_C: Tetrah 57.6 11 0.00023 33.4 3.1 55 211-271 35-89 (160)
15 PRK02947 hypothetical protein; 56.0 1.2E+02 0.0026 28.2 10.1 55 210-266 104-167 (246)
16 COG1737 RpiR Transcriptional r 55.1 1.9E+02 0.0041 27.3 11.8 143 116-271 89-232 (281)
17 COG4100 Cystathionine beta-lya 53.5 11 0.00023 37.3 2.6 109 112-222 76-209 (416)
18 PF00205 TPP_enzyme_M: Thiamin 53.1 23 0.00049 29.4 4.3 64 201-268 2-85 (137)
19 PRK14191 bifunctional 5,10-met 53.1 18 0.00039 35.0 4.1 55 211-271 156-210 (285)
20 PF11576 DUF3236: Protein of u 52.2 14 0.0003 32.4 2.8 63 199-268 24-100 (154)
21 PRK03094 hypothetical protein; 51.0 24 0.00052 27.9 3.8 35 232-271 12-46 (80)
22 PRK14194 bifunctional 5,10-met 50.9 16 0.00035 35.6 3.4 51 211-266 158-208 (301)
23 PRK14188 bifunctional 5,10-met 47.9 20 0.00043 34.8 3.5 51 211-266 157-207 (296)
24 PRK14494 putative molybdopteri 45.0 55 0.0012 30.5 5.9 19 252-271 78-96 (229)
25 PRK14180 bifunctional 5,10-met 44.4 23 0.0005 34.2 3.3 55 211-271 157-211 (282)
26 COG0132 BioD Dethiobiotin synt 44.4 18 0.00038 33.8 2.5 27 245-271 91-117 (223)
27 PRK14166 bifunctional 5,10-met 43.3 25 0.00055 33.9 3.4 55 211-271 156-210 (282)
28 PRK14186 bifunctional 5,10-met 43.2 25 0.00053 34.3 3.4 56 211-271 157-213 (297)
29 PF13500 AAA_26: AAA domain; P 43.1 20 0.00043 31.6 2.5 15 258-272 97-111 (199)
30 PRK14177 bifunctional 5,10-met 42.6 26 0.00056 33.9 3.4 55 211-271 158-212 (284)
31 PRK10792 bifunctional 5,10-met 42.2 25 0.00054 34.0 3.2 55 211-271 158-212 (285)
32 PRK14187 bifunctional 5,10-met 41.9 26 0.00057 34.0 3.4 56 211-271 159-215 (294)
33 PRK14170 bifunctional 5,10-met 41.3 28 0.00061 33.7 3.4 56 211-271 156-212 (284)
34 PRK14189 bifunctional 5,10-met 41.2 29 0.00062 33.6 3.5 51 211-266 157-207 (285)
35 PRK14183 bifunctional 5,10-met 41.0 30 0.00066 33.4 3.6 55 211-271 156-210 (281)
36 PF04016 DUF364: Domain of unk 40.9 12 0.00027 32.2 0.9 52 210-270 9-72 (147)
37 PRK14190 bifunctional 5,10-met 40.9 33 0.00071 33.2 3.8 51 211-266 157-207 (284)
38 PRK14179 bifunctional 5,10-met 40.5 29 0.00063 33.5 3.4 55 211-271 157-211 (284)
39 TIGR00379 cobB cobyrinic acid 40.3 21 0.00046 36.3 2.5 24 248-271 65-88 (449)
40 PRK14173 bifunctional 5,10-met 40.0 30 0.00065 33.5 3.4 56 211-271 154-210 (287)
41 PLN02516 methylenetetrahydrofo 39.9 31 0.00067 33.6 3.5 55 211-271 166-220 (299)
42 PRK14172 bifunctional 5,10-met 39.2 31 0.00067 33.3 3.3 55 211-271 157-211 (278)
43 PF01488 Shikimate_DH: Shikima 39.1 46 0.001 27.8 4.1 28 211-244 11-39 (135)
44 PF08328 ASL_C: Adenylosuccina 39.0 29 0.00063 29.3 2.7 26 103-128 55-80 (115)
45 PRK14176 bifunctional 5,10-met 39.0 30 0.00066 33.5 3.2 56 211-271 163-219 (287)
46 PRK14169 bifunctional 5,10-met 37.9 33 0.00072 33.1 3.3 56 211-271 155-211 (282)
47 KOG3349 Predicted glycosyltran 37.8 37 0.0008 30.4 3.3 78 181-271 13-91 (170)
48 COG1763 MobB Molybdopterin-gua 37.6 49 0.0011 29.3 4.1 25 247-271 74-103 (161)
49 COG1058 CinA Predicted nucleot 37.5 22 0.00048 33.8 2.0 39 233-271 26-72 (255)
50 PRK14171 bifunctional 5,10-met 37.4 36 0.00078 33.0 3.5 56 211-271 158-214 (288)
51 PRK01077 cobyrinic acid a,c-di 36.9 24 0.00053 35.8 2.3 49 221-271 14-92 (451)
52 PRK06719 precorrin-2 dehydroge 36.8 79 0.0017 27.4 5.3 39 211-256 12-52 (157)
53 cd03116 MobB Molybdenum is an 36.4 1.1E+02 0.0024 26.7 6.1 18 254-271 86-103 (159)
54 PRK14178 bifunctional 5,10-met 35.7 45 0.00098 32.2 3.9 55 211-271 151-205 (279)
55 cd06167 LabA_like LabA_like pr 35.2 86 0.0019 26.0 5.1 43 211-259 99-144 (149)
56 TIGR00176 mobB molybdopterin-g 35.1 66 0.0014 27.8 4.5 17 255-271 84-100 (155)
57 COG3961 Pyruvate decarboxylase 34.8 93 0.002 32.8 6.1 63 204-270 203-286 (557)
58 PRK05670 anthranilate synthase 34.6 1.1E+02 0.0023 27.0 5.9 51 216-271 2-55 (189)
59 PRK14182 bifunctional 5,10-met 34.5 42 0.0009 32.5 3.4 56 211-271 156-212 (282)
60 PRK08306 dipicolinate synthase 34.5 76 0.0017 30.4 5.2 50 211-266 151-216 (296)
61 COG0373 HemA Glutamyl-tRNA red 34.4 75 0.0016 32.4 5.4 51 211-267 177-245 (414)
62 COG1797 CobB Cobyrinic acid a, 34.3 24 0.00052 36.2 1.8 55 214-269 2-87 (451)
63 PRK14192 bifunctional 5,10-met 33.2 56 0.0012 31.4 4.0 51 211-266 158-208 (283)
64 PRK00676 hemA glutamyl-tRNA re 32.5 64 0.0014 32.0 4.4 50 211-266 173-232 (338)
65 COG0287 TyrA Prephenate dehydr 32.1 72 0.0016 30.6 4.6 27 212-244 3-29 (279)
66 PRK14181 bifunctional 5,10-met 32.0 46 0.001 32.2 3.3 56 211-271 152-212 (287)
67 cd07187 YvcK_like family of mo 31.9 68 0.0015 31.3 4.4 45 223-271 135-185 (308)
68 COG2952 Uncharacterized protei 31.9 3.8E+02 0.0082 24.0 9.0 150 46-242 31-182 (183)
69 PRK12374 putative dithiobiotin 31.4 39 0.00084 30.8 2.6 27 245-271 90-116 (231)
70 cd01079 NAD_bind_m-THF_DH NAD 30.4 72 0.0016 29.3 4.1 55 211-271 61-136 (197)
71 PLN02897 tetrahydrofolate dehy 30.3 49 0.0011 32.9 3.2 56 211-271 213-269 (345)
72 TIGR02069 cyanophycinase cyano 29.8 2.8E+02 0.0061 26.0 8.1 68 201-271 18-92 (250)
73 PRK11557 putative DNA-binding 29.8 4.5E+02 0.0097 24.3 10.8 139 116-268 87-227 (278)
74 cd03109 DTBS Dethiobiotin synt 29.7 63 0.0014 27.0 3.4 42 220-271 8-49 (134)
75 PRK09570 rpoH DNA-directed RNA 29.6 32 0.0007 27.1 1.5 22 291-312 41-62 (79)
76 PRK09860 putative alcohol dehy 29.4 1.5E+02 0.0033 29.4 6.5 77 195-273 14-101 (383)
77 PF06967 Mo-nitro_C: Mo-depend 29.1 3.3 7.1E-05 32.9 -4.2 16 211-226 65-80 (84)
78 PRK06444 prephenate dehydrogen 28.9 92 0.002 28.3 4.5 36 214-266 2-37 (197)
79 PLN02616 tetrahydrofolate dehy 28.9 56 0.0012 32.8 3.3 56 211-271 230-286 (364)
80 PRK14493 putative bifunctional 28.9 77 0.0017 30.2 4.2 13 259-271 86-98 (274)
81 PRK14184 bifunctional 5,10-met 28.1 66 0.0014 31.2 3.6 55 211-271 156-214 (286)
82 PRK14495 putative molybdopteri 28.1 1.2E+02 0.0025 31.4 5.5 28 215-244 3-32 (452)
83 cd07044 CofD_YvcK Family of Co 28.0 73 0.0016 31.1 3.9 50 215-271 128-184 (309)
84 PF01191 RNA_pol_Rpb5_C: RNA p 27.6 37 0.00079 26.4 1.4 22 291-312 38-59 (74)
85 PRK14193 bifunctional 5,10-met 27.1 64 0.0014 31.2 3.3 56 211-271 157-215 (284)
86 COG0698 RpiB Ribose 5-phosphat 26.9 78 0.0017 27.9 3.5 55 214-271 2-70 (151)
87 PRK05858 hypothetical protein; 26.9 1.2E+02 0.0026 31.4 5.5 68 198-269 191-271 (542)
88 COG1922 WecG Teichoic acid bio 26.7 39 0.00084 32.2 1.7 25 247-271 51-75 (253)
89 PF10087 DUF2325: Uncharacteri 26.5 1.5E+02 0.0033 23.2 5.0 34 233-266 15-54 (97)
90 TIGR01819 F420_cofD LPPG:FO 2- 25.4 63 0.0014 31.5 2.9 49 216-271 136-192 (297)
91 PF13344 Hydrolase_6: Haloacid 25.1 1.5E+02 0.0032 23.6 4.6 42 198-244 17-58 (101)
92 PRK14168 bifunctional 5,10-met 25.0 78 0.0017 30.8 3.5 56 211-271 160-220 (297)
93 PRK06718 precorrin-2 dehydroge 24.6 2.1E+02 0.0045 25.8 6.0 42 211-259 9-52 (202)
94 PRK14167 bifunctional 5,10-met 24.4 77 0.0017 30.9 3.3 56 211-271 156-216 (297)
95 PRK07282 acetolactate synthase 24.2 1.6E+02 0.0035 30.7 5.9 66 199-268 199-284 (566)
96 PRK14174 bifunctional 5,10-met 23.4 98 0.0021 30.1 3.9 55 211-271 158-216 (295)
97 PRK05282 (alpha)-aspartyl dipe 23.2 3.4E+02 0.0073 25.3 7.3 57 211-271 30-89 (233)
98 TIGR00789 flhB_rel flhB C-term 23.2 41 0.00088 26.5 1.0 38 260-308 16-62 (82)
99 PRK15454 ethanol dehydrogenase 23.2 2.9E+02 0.0063 27.6 7.3 71 198-273 35-119 (395)
100 PF03205 MobB: Molybdopterin g 23.0 1.7E+02 0.0038 24.7 4.9 18 253-271 85-102 (140)
101 TIGR01826 CofD_related conserv 22.7 1.5E+02 0.0033 29.0 5.0 43 223-271 134-182 (310)
102 PRK07979 acetolactate synthase 22.6 1.9E+02 0.0041 30.1 6.1 66 199-268 195-280 (574)
103 COG0326 HtpG Molecular chapero 22.6 5.8E+02 0.013 27.6 9.6 109 117-244 339-453 (623)
104 TIGR00177 molyb_syn molybdenum 22.5 62 0.0013 27.4 2.1 36 233-268 32-74 (144)
105 KOG3218 RNA polymerase, 25-kDa 22.4 46 0.001 30.7 1.3 21 291-311 172-192 (208)
106 PRK08327 acetolactate synthase 22.3 1.2E+02 0.0027 31.5 4.6 64 198-268 208-287 (569)
107 COG0190 FolD 5,10-methylene-te 22.1 93 0.002 30.2 3.3 56 211-271 155-211 (283)
108 PRK03692 putative UDP-N-acetyl 22.0 46 0.001 31.3 1.3 24 248-271 49-72 (243)
109 PRK14185 bifunctional 5,10-met 20.8 99 0.0021 30.1 3.3 56 211-271 156-216 (293)
110 PF03720 UDPG_MGDP_dh_C: UDP-g 20.7 39 0.00085 27.1 0.4 36 231-266 20-72 (106)
111 PRK07649 para-aminobenzoate/an 20.7 2.7E+02 0.0058 24.9 5.9 51 216-271 2-55 (195)
112 TIGR01035 hemA glutamyl-tRNA r 20.7 1.6E+02 0.0035 29.5 4.9 51 211-267 179-247 (417)
113 PRK14489 putative bifunctional 20.5 3.3E+02 0.0071 26.8 7.0 28 215-244 208-236 (366)
114 TIGR03393 indolpyr_decarb indo 20.1 2.7E+02 0.0059 28.7 6.6 65 200-268 195-280 (539)
115 cd06070 H2MP_like-2 Putative [ 20.1 1.7E+02 0.0037 24.6 4.3 38 228-266 15-52 (140)
No 1
>PLN02902 pantothenate kinase
Probab=100.00 E-value=3.2e-80 Score=644.05 Aligned_cols=299 Identities=41% Similarity=0.720 Sum_probs=277.1
Q ss_pred CCCCcCCCCCCCCCCCCCcCCcccCCCCCCC-CCCCCcchhhHHHHHhhhhHHHHHHhcC-CCCCccHHHHHHHHHHHHH
Q 021170 4 ESELVPFPLLPTPIETNYRACTIPYRFPTDN-PKKPTRTEIAWLDLFLNSIPSFKKRAES-DPTVPDAHVRAEKFAQRYS 81 (316)
Q Consensus 4 ~~~~~~~pll~~~~~~~y~p~t~d~~~~~~~-~r~~~~~~~~wl~c~~~~i~~~~~~a~~-~~~~~~~~~ra~~~~~~~~ 81 (316)
.+++++||||.||. +|.|||+||+ |. +|. ||++||.+++|+++++|.+ ++..+|+.+|+++|+++|.
T Consensus 494 ~~~l~~~pLL~~~~--~Y~p~t~d~~---d~~~r~------yW~~~f~~~i~~~~~~A~~sq~~~~da~~ra~~F~~~y~ 562 (876)
T PLN02902 494 VPTLEVFPLLADPK--TYEPNTIDLS---DQSERE------YWFKVLSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFS 562 (876)
T ss_pred ccccccccccCCCC--CCCCCcccCC---ccHHHH------HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 46899999999998 9999999994 33 554 9999999999999999974 5688999999999999999
Q ss_pred HHHHHhhcCCCCCCCchhhhHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 021170 82 EILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFA 161 (316)
Q Consensus 82 ~~l~~l~~~p~~~~~~~~~~~~~~~~e~~~~~~G~~Dpy~~~K~~~N~~Al~~~p~l~~~ld~i~~~~d~l~~aik~aia 161 (316)
++|++++++|.+||+++ ++.+++++|+|+|++|++|||+++|+++|+.|++++|++++++|+++ +++||++++|+++|
T Consensus 563 ~~L~~l~~~p~a~G~~~-~~~Ll~~rE~~Lre~Gf~DPY~~vK~~eN~~AL~llp~l~~~ld~~~-~edrL~~aVk~aiA 640 (876)
T PLN02902 563 AHLARLMEEPAAYGKLG-LANLLELREECLREFHFVDAYRSIKQRENEASLAVLPDLLAELDSMT-EETRLLTLIEGVLA 640 (876)
T ss_pred HHHHHHHhCccccCCch-HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHH
Confidence 99999999999998886 48999999999999999999999999999999999999999998776 46999999999999
Q ss_pred hcccccchhhHHHhhccCC-CcHHHHHhhhcCCCCCCCcHHHHHHHhcc------cCCCeEEEEecCCCchhhhchHHHH
Q 021170 162 GNIFDLGSAQLAEVFSKDG-MSFLASCQNLVPRPWVIDDLETFKVKWSK------KAWKKAVIFVDNSGADIILGILPFA 234 (316)
Q Consensus 162 GN~iD~Ga~~~~~~~~~~~-~~~~~~~~~~~~~p~~idd~~~~~~~l~~------~~~k~vl~~~DNaGEdIVfD~LPLi 234 (316)
||+||||+++.+++++.+. ++|++.+++++++||.+||++.|+++|.+ ++||++|||+||||+|||||+|||+
T Consensus 641 GNifD~Ga~~~v~l~~~~~~~~~~~~~~~~~~rpw~iDD~d~f~erL~~~~~~~~~~~KkvLyf~DNAGaEIVLD~LpLi 720 (876)
T PLN02902 641 ANIFDWGSRACVELYHKGTIIEIYRMSRNKMQRPWRVDDFDAFKERMLGSGGKKPKPHKRALLFVDNSGADVVLGMLPLA 720 (876)
T ss_pred HhhhhhhhhhhhhhccccchhhHHHHHHHhhcCCCccCCHHHHHHHHhhcccccCCCccEEEEEecCCCCceecChHHHH
Confidence 9999999998888887653 68999999999999999999999999953 3699999999999977999999999
Q ss_pred HHHHhCCCce----------------------------------------------------------------------
Q 021170 235 RELLRRGTQV---------------------------------------------------------------------- 244 (316)
Q Consensus 235 ~eL~~~g~~V---------------------------------------------------------------------- 244 (316)
|+|+++|++|
T Consensus 721 RELl~rgtkV~lavng~PiINDvT~eDl~~~~~~~a~~~~~l~~A~~aG~~~~~~~~~ld~~~~~~~~~~~l~VV~SG~~ 800 (876)
T PLN02902 721 RELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMVNTDDGSKDDSTSVPLMVVENGCG 800 (876)
T ss_pred HHHHHcCCEEEEEECCCCchhhhhHHHHHHHHHHHhhcccHHHHHHHhcccccccccccccccccccccceEEEEcCCCC
Confidence 9999988877
Q ss_pred ---eeCCCCCHHHHHHhccCCEEEEcCCCCCCCccchhhcccchhhhccCCCHHHHHHh-CCCCCCeEEEeccCC
Q 021170 245 ---IDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFL-GGRLYDCVFKYNEVS 315 (316)
Q Consensus 245 ---idL~~~S~e~~~~~~~ADLIIsKGmGn~~~~ni~~~f~cdllkL~~vKC~~vA~~l-G~~~gd~V~~~~~~~ 315 (316)
+||+++|+||++++++|||||+|||||++|||++++|+||+|||||||++|+|++| |+++|||||||+++.
T Consensus 801 sPGidL~rvS~E~~~a~~~ADLIIaKGMGRaihTN~~a~f~cd~LklamiK~~~lA~~L~gG~~ydcV~k~e~~~ 875 (876)
T PLN02902 801 SPCIDLRQVSSELAAAAKDADLIVLEGMGRALHTNFNARFKCEALKLAMVKNQRLAEKLINGNIYDCVCRYEPAS 875 (876)
T ss_pred CCCcChHHCCHHHHHHhcCCCEEEEcCcccccccccccceecchhHHhHhccHHHHhhccCCceEEEEEecccCC
Confidence 23689999999999999999999999999999999999999999999999999999 999999999999875
No 2
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=2.1e-79 Score=572.39 Aligned_cols=290 Identities=66% Similarity=1.062 Sum_probs=272.8
Q ss_pred CCcCCcccCCCCCCCCCCCCcchhhHHHHHhhhhHHHHHHhcCCC-CCccHHHHHHHHHHHHHHHHHHhhcCCCCCCCch
Q 021170 20 NYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDP-TVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPP 98 (316)
Q Consensus 20 ~y~p~t~d~~~~~~~~r~~~~~~~~wl~c~~~~i~~~~~~a~~~~-~~~~~~~ra~~~~~~~~~~l~~l~~~p~~~~~~~ 98 (316)
+|.+||++|.+++++.+..+|++.||++||.++||++.|+|++++ +.+||+.||++|+++|..+|+.++++|.+||.||
T Consensus 5 ~~~~~~~~y~p~t~d~~k~~~a~~~Wi~~f~~~ip~f~krA~asq~~~~DA~~RAe~F~~~y~~~Le~lk~~P~a~G~~~ 84 (348)
T KOG4584|consen 5 NYRACTIPYRFPTDDLNKDTPAEIYWINVFSNSIPSFKKRAEASQENVPDAPARAEKFAQRYAGILEDLKKDPEAYGGPP 84 (348)
T ss_pred ccccCCCCCCCCCCCccccchhhhHHHHHHHHHhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHhChHhcCCCc
Confidence 455555555555555556688999999999999999999997654 5999999999999999999999999999999887
Q ss_pred hhhHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhHHHHHHHHHHhhcccccchhhHHHhhcc
Q 021170 99 DCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSK 178 (316)
Q Consensus 99 ~~~~~~~~~e~~~~~~G~~Dpy~~~K~~~N~~Al~~~p~l~~~ld~i~~~~d~l~~aik~aiaGN~iD~Ga~~~~~~~~~ 178 (316)
....+++++|+|+|++||.|||+++|++||+.|++++|++.+.+|+|++++.||++++||.+||||||||++..+++++.
T Consensus 85 ~g~~Ll~lRE~~LrE~gF~Diy~kvK~~ENa~Aia~fP~vv~~lDal~dE~~Rle~LvrGilAGNiFDwGa~~~~~il~~ 164 (348)
T KOG4584|consen 85 LGINLLRLREQILRELGFRDIYKKVKDEENAKAIALFPQVVRLLDALEDEGTRLENLVRGILAGNIFDWGAKAVVKILES 164 (348)
T ss_pred chHHHHHHHHHHHHHhCCccHHHHHHHhhhhhHHHHhHHHHHHHhhhcchhHHHHHHHHHHHhcchhhhHHHHHHHHHhc
Confidence 66679999999999999999999999999999999999999999999988889999999999999999999999999987
Q ss_pred CC-CcHHHHHhhhcCCCCCCCcHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhCCCce-------------
Q 021170 179 DG-MSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQV------------- 244 (316)
Q Consensus 179 ~~-~~~~~~~~~~~~~p~~idd~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V------------- 244 (316)
++ |+|..+++++.+|||.+||++.|+++|.+++||++++|+||+|.|||||+|||+|+|+++|++|
T Consensus 165 ~~~f~f~~a~~~l~~RPWl~D~ld~f~~r~~~~p~K~~lif~DNSG~DvILGilPf~Rellr~gt~vil~ans~palNdv 244 (348)
T KOG4584|consen 165 ASVFGFLAALQNLESRPWLVDDLDSFLARLKGKPHKCALIFVDNSGFDVILGILPFARELLRRGTEVILCANSSPALNDV 244 (348)
T ss_pred cccchHHHHHhhhhcCCeeeccHHHHHHHhcCCCcceEEEEecCCCcceeeeecHHHHHHHhCCCeEEEEecCcchhccc
Confidence 64 7999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ---------------------------------------eeCCCCCHHHHHHhccCCEEEEcCCCCCCCccchhhcccch
Q 021170 245 ---------------------------------------IDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDS 285 (316)
Q Consensus 245 ---------------------------------------idL~~~S~e~~~~~~~ADLIIsKGmGn~~~~ni~~~f~cdl 285 (316)
|||+|+|+|++.+..+|||||++||||++|||+|++|+||+
T Consensus 245 t~~el~~l~~~~~~~~~~l~~~~~~~~ll~~~~G~~~pciDlrrvsqeLa~l~~daDLVViEGMGRalhTN~~aqf~CeS 324 (348)
T KOG4584|consen 245 TYSELKELAAELANDCNVLLKAIDTGQLLVVQNGQDSPCIDLRRVSQELAYLSSDADLVVIEGMGRALHTNLNAQFKCES 324 (348)
T ss_pred cHHHHHHHHHhhccCChHHHHHhhhcceEEeecCCCCceeeHHhhhHHHHHHhcCCCEEEEeccchhhhhhhhhhhcccH
Confidence 99999999999999999999999999999999999999999
Q ss_pred hhhccCCCHHHHHHhCCCCCCeEE
Q 021170 286 LKIGMVKHPEVAQFLGGRLYDCVF 309 (316)
Q Consensus 286 lkL~~vKC~~vA~~lG~~~gd~V~ 309 (316)
||++|||+.|+|++||+++|++||
T Consensus 325 LK~avik~~wlA~~LGgrlf~vVf 348 (348)
T KOG4584|consen 325 LKLAVIKNLWLAERLGGRLFSVVF 348 (348)
T ss_pred hHHHHHhhHHHHHHhCCchheecC
Confidence 999999999999999999999997
No 3
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.4e-50 Score=372.27 Aligned_cols=235 Identities=23% Similarity=0.289 Sum_probs=201.5
Q ss_pred hHHHHHhhhhHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHHHHcCCcchHHHH
Q 021170 44 AWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKV 123 (316)
Q Consensus 44 ~wl~c~~~~i~~~~~~a~~~~~~~~~~~ra~~~~~~~~~~l~~l~~~p~~~~~~~~~~~~~~~~e~~~~~~G~~Dpy~~~ 123 (316)
.|+.|+.+|....++++..|+.. ..| .....++.|.+. .....+|+.. ...+|+.+++.+|.+|||++.
T Consensus 6 ~C~~C~l~q~~~~~~~~t~ded~---~~~---~~~~~~~lls~~---y~~~~~~a~~--~t~ihr~v~k~~g~eDPyke~ 74 (285)
T COG1578 6 ECLPCLLRQAVNAVKLATDDEDL---RSR---IMSEALKLLSEE---YGESAVPAIA--GTLIHREVYKILGNEDPYKEY 74 (285)
T ss_pred cchHHHHHHHHHHHHHcCCCHHH---HHH---HHHHHHHHHHhh---hCcCCCcHHH--HHHHHHHHHHHcCCCCcHHHH
Confidence 59999999999999999765542 222 233444444433 2334445444 889999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhhhhhhHHHHHHHHHHhhcccccchhhHHHhhccCCCcHHHHHhhhcCCCCCCCcHHHH
Q 021170 124 KDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETF 203 (316)
Q Consensus 124 K~~~N~~Al~~~p~l~~~ld~i~~~~d~l~~aik~aiaGN~iD~Ga~~~~~~~~~~~~~~~~~~~~~~~~p~~idd~~~~ 203 (316)
|+++|++|++++|.+++. +++.+++|++|+++|++||+||||+.+.. .+++++.+++++..++.|||++.|
T Consensus 75 K~r~NeiA~~vl~~vr~~---~~~~~~dl~~Avk~ai~GN~iDfgv~G~~------~~~lee~~~~~~~~~l~i~d~~k~ 145 (285)
T COG1578 75 KRRANEIALKVLPKVREN---IEDTPEDLKTAVKLAIVGNVIDFGVLGFS------PFDLEEEVEKLLDAELYIDDSPKL 145 (285)
T ss_pred HHHHHHHHHHHHHHHHhc---ccCChHHHHHHHHHHHHhcceeeccccCC------HhHHHHHHHHhhcCcccccchHHH
Confidence 999999999999999996 44567889999999999999999999620 589999999999999999999999
Q ss_pred HHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhCCCce--------------------------------------e
Q 021170 204 KVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQV--------------------------------------I 245 (316)
Q Consensus 204 ~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V--------------------------------------i 245 (316)
.++| +++ +|+|++||||| |+||++ |++.|+++|.+| +
T Consensus 146 ~~~l--~~a-~VlYl~DNaGE-i~FD~v-lie~ik~~~~~vv~vVrg~PIlnDaT~EDak~~~i~~i~~vittG~~~vGi 220 (285)
T COG1578 146 LELL--KNA-SVLYLTDNAGE-IVFDKV-LIEVIKELGKKVVVVVRGGPILNDATMEDAKEAGIDEIAKVITTGSDIVGI 220 (285)
T ss_pred HHHh--ccC-cEEEEecCCcc-HHHHHH-HHHHHHhcCCceEEEEcCCceechhhHHHHHHcCcchhheeecCCCCccee
Confidence 9999 667 99999999999 999999 999999987766 5
Q ss_pred eCCCCCHHHHHHhccCCEEEEcCCCC--CC----CccchhhcccchhhhccCCCHHHHHHhCCCCCCeEEEe
Q 021170 246 DLTAVSQELAYLASDADLVILEGMGR--GI----ETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKY 311 (316)
Q Consensus 246 dL~~~S~e~~~~~~~ADLIIsKGmGn--~~----~~ni~~~f~cdllkL~~vKC~~vA~~lG~~~gd~V~~~ 311 (316)
-++.+|.||+++|.+||+|||||||| ++ ..++|| +|+ +||++||+.+||++|+.||+.
T Consensus 221 ~l~d~s~Ef~~~f~~adlIIaKG~gNfE~LsE~~~~piff-----LL~---AKC~~VAr~lgV~~G~~V~~~ 284 (285)
T COG1578 221 WLEDVSEEFREAFESADLIIAKGQGNFETLSEEEDKPIFF-----LLK---AKCDPVARELGVPRGANVAKR 284 (285)
T ss_pred eHHhccHHHHHHhccCCEEEecCccccccccccCCCcEEe-----eec---ccCchHHHHhCCCCCCeeeec
Confidence 59999999999999999999999999 22 258999 888 999999999999999999985
No 4
>PF01937 DUF89: Protein of unknown function DUF89; InterPro: IPR002791 This entry contains uncharacterised proteins. Those with structural information consist of two domains: an all-alpha domain with a 3-helical bundle fold, and an alpha-beta domain in 3 layers, alpha/beta/alpha. ; PDB: 2FFJ_B 1XFI_A 2Q40_A 2G8L_B 3PT1_A.
Probab=100.00 E-value=6.4e-40 Score=318.79 Aligned_cols=250 Identities=25% Similarity=0.291 Sum_probs=190.9
Q ss_pred hhHHHHHhhhhHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhh-------------------hHH
Q 021170 43 IAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDC-------------------ILL 103 (316)
Q Consensus 43 ~~wl~c~~~~i~~~~~~a~~~~~~~~~~~ra~~~~~~~~~~l~~l~~~p~~~~~~~~~-------------------~~~ 103 (316)
.+|++|+.+++....+++..+ +.++.+++.+.+.+.+.++.. .++++.+ ...
T Consensus 3 ~~c~p~il~~~i~~~~~~~~~-----~~~~~~~i~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~w~~~pWL~~e 73 (355)
T PF01937_consen 3 RECLPCILTQAIDSLRRANDD-----AEEDIKEIIEELSKLRYELDT----NKPLPPITDDGPDSEEGPTWFNAPWLFAE 73 (355)
T ss_dssp HTHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHH----TTCGHHH-HHHHHHSTT-BTTBSBHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccc-----HHHHHHHHHHHHHHHHHHhhc----CCCCCccccccccccccccccccchHHHH
Confidence 368888888888877776433 355555555666665555553 3444431 247
Q ss_pred HHHHHHHHHHcC------CcchHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhHHHHHHHHHHhhcccccchhhHHHhhc
Q 021170 104 CRLREQVLRELG------FRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFS 177 (316)
Q Consensus 104 ~~~~e~~~~~~G------~~Dpy~~~K~~~N~~Al~~~p~l~~~ld~i~~~~d~l~~aik~aiaGN~iD~Ga~~~~~~~~ 177 (316)
+.+||++++.+| +.|||+++|+++|+.|++.+|.+...++++.+..++|..++++|++||+||||+.... +
T Consensus 74 ~ylyr~i~~~~~~~~~~~~~DPf~~~K~~~~~~al~~~~~l~~~l~~~~~~~~~~~~~l~~al~GN~~Dls~~~~~---~ 150 (355)
T PF01937_consen 74 CYLYRRILEIFGYSSYLKNYDPFAEQKQESNEIALKLIPELAERLESLPDPRERFREALKLALWGNIIDLSLSPGH---E 150 (355)
T ss_dssp HHHHHHHHHHHTHSTTTTTS-TTHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHCG--CCCHTSH---H
T ss_pred HHHHHHHHHhcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhcCcccCccccc---h
Confidence 899999999999 9999999999999999999999999988766555679999999999999999987711 1
Q ss_pred cCCCcHHHHHhhhcCCCCCCCcHHHHHHHhcccCCCeEEEEecCCC-chhhhchHHHHHHHHh--CCCce----------
Q 021170 178 KDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSG-ADIILGILPFARELLR--RGTQV---------- 244 (316)
Q Consensus 178 ~~~~~~~~~~~~~~~~p~~idd~~~~~~~l~~~~~k~vl~~~DNaG-EdIVfD~LPLi~eL~~--~g~~V---------- 244 (316)
..+.+....+.+.++++|.+||+++|.+.|...++++|+|++|||| | +|||++ |+++|++ +|.+|
T Consensus 151 ~~~~~~~~~~~~~~~~~~l~dd~~~~~~~l~~~~~~~v~~v~DNaG~E-lv~D~l-l~~~L~~~~~~~~V~~~vK~~P~~ 228 (355)
T PF01937_consen 151 VGEFDQEEEIEKALEKPILVDDSDEFWEKLENKKAKRVDIVLDNAGFE-LVFDLL-LAEFLLESGPGSKVVFHVKGIPWF 228 (355)
T ss_dssp CHHHHHHHHHHHHHHSTESEE-HHHHHHHHCTCHTSEEEEE--BTTHH-HHHHHH-HHHHHHHTCTTSEEEEEEBSS--T
T ss_pred hcccchHHHHHHhhhcCCccccHHHHHHHhhccCCCEEEEEEcCCCcH-HHhhHH-HHHHHHHhCCCCeEEEEECCCCCe
Confidence 1134567778888899999999999999995567999999999999 8 999999 9999999 77777
Q ss_pred ---------------------------------------------------eeCCCCCHHHHHHhccCCEEEEcCCCC--
Q 021170 245 ---------------------------------------------------IDLTAVSQELAYLASDADLVILEGMGR-- 271 (316)
Q Consensus 245 ---------------------------------------------------idL~~~S~e~~~~~~~ADLIIsKGmGn-- 271 (316)
++++++|++|.+.+.+|||||+|||||
T Consensus 229 vnDvT~~D~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~fw~~~~~~~~~~~el~~~l~~adLVI~KG~~Nyr 308 (355)
T PF01937_consen 229 VNDVTMEDAEWLLERLADSDDFSLSALGKGLDKYLESGRVIVSGDDFWTPGLDLWEMSPELYEELSEADLVIFKGDLNYR 308 (355)
T ss_dssp TTB-BHHHHHHHHHHHH-TTTCHHHHHHTTHHHHHHTSEEEEESSCGGSSS--CCGSHHHHHHHHCC-SEEEEEHHHHHH
T ss_pred eccCcHHHHHHHHHHHHhcccccccccccchhhccccCeEEecCCCccCCCCChHHcCHHHHHHHhhCCEEEEeCCHHHh
Confidence 669999999999999999999999999
Q ss_pred CCCccchhhcc-----------cchhhhccCCCHHHHHHhCCCCCCe
Q 021170 272 GIETNLYAQFK-----------CDSLKIGMVKHPEVAQFLGGRLYDC 307 (316)
Q Consensus 272 ~~~~ni~~~f~-----------cdllkL~~vKC~~vA~~lG~~~gd~ 307 (316)
.+..+....++ |.+++|.++||++||..+ +++|+.
T Consensus 309 ~L~~d~~~~~t~~f~~~~~~~p~~i~~L~~~Kc~~va~~~-~~~~d~ 354 (355)
T PF01937_consen 309 KLLGDRNWPPTTPFKTALGFFPAPILFLRTVKCDVVAGLL-VGQGDK 354 (355)
T ss_dssp HHTTSCTTTTTSEHHHHTGTSS--EEEEEE--SHHHHHHH-STTTHC
T ss_pred hhhcCcCCCCCCCccccchhHHHHHHHhHhhCCHHHhCCC-ccCcCC
Confidence 34433333333 448888889999999999 888864
No 5
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=5.3e-07 Score=88.88 Aligned_cols=165 Identities=21% Similarity=0.269 Sum_probs=123.1
Q ss_pred HHHHHHHHH------HHcCCcchHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhh----HHHHHHHHHHhhcccccchhhH
Q 021170 103 LCRLREQVL------RELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGK----RVESLIRGIFAGNIFDLGSAQL 172 (316)
Q Consensus 103 ~~~~~e~~~------~~~G~~Dpy~~~K~~~N~~Al~~~p~l~~~ld~i~~~~d----~l~~aik~aiaGN~iD~Ga~~~ 172 (316)
=|-+||.|- .....-|||.++|+..-........++......++.+-+ -+.+.+++++=||-.|.+..+.
T Consensus 119 ECYlYRrI~s~F~~s~~l~~yD~F~~~K~~~~~~s~~~i~ela~~~~~l~~~~~~~~~~F~~llkisLWGN~~Dlsl~~~ 198 (434)
T KOG3870|consen 119 ECYLYRRISSIFQRSSELKKYDYFFDQKESTLTSSLPAIEELAKRTRGLERSLESIHEVFVELLKISLWGNATDLSLNGG 198 (434)
T ss_pred hHHHHHHHHHHHHhhhhhhhcChHHHHhHHHHhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhccccccccccc
Confidence 345666663 335567999999999877777776676666665655555 7889999999999999987432
Q ss_pred HHhhccCCCcHHHHHhhhcCCCCCCCcHHHHHHHhccc---CCCeEEEEecCCCchhhhchHHHHHHHHhCC--Cce---
Q 021170 173 AEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKK---AWKKAVIFVDNSGADIILGILPFARELLRRG--TQV--- 244 (316)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~p~~idd~~~~~~~l~~~---~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g--~~V--- 244 (316)
.+- ..+..-.+++++. ..-..+||+......|.+. .+++|=++.||||-..+-|.+ |++.|+..| ++|
T Consensus 199 ~~~--~~~~q~~~~va~~-~~~iLvnd~~~vW~~L~~~k~s~~~rVDfVlDNaGfEL~~DLi-lAeyli~~glA~kV~fH 274 (434)
T KOG3870|consen 199 TES--KQNIQVLKAVADL-DEFILVNDTEDVWSKLSNAKHSRNGRVDFVLDNAGFELFTDLI-LAEYLISSGLATKVRFH 274 (434)
T ss_pred ccc--cchhHHHHHHHhh-ccceeecChHHHHHHhhcchhcCCceEEEEEeCCccchhHHHH-HHHHHHhccccceEEEc
Confidence 110 0022344455553 5557899998888787543 667899999999987988988 999999987 344
Q ss_pred -------------------------------------------------------------eeCCCCCHHHHHHhccCCE
Q 021170 245 -------------------------------------------------------------IDLTAVSQELAYLASDADL 263 (316)
Q Consensus 245 -------------------------------------------------------------idL~~~S~e~~~~~~~ADL 263 (316)
-.+.++.+++-..+++++|
T Consensus 275 ~KaiPWFVSDvt~~Df~wll~~L~~~~~~~ls~~g~k~~~~~~~Gk~vl~~~~FWTsph~y~~M~~~~p~Ly~~L~~S~L 354 (434)
T KOG3870|consen 275 VKAIPWFVSDVTEKDFDWLLEFLRDHEDEELSAFGKKLEKFIKEGKIVLRPHYFWTSPHDYYRMPQVAPDLYDDLQKSSL 354 (434)
T ss_pred ccCCceeeecccccchHHHHHHHhccCcHHHHHHHHHHHHHHhcCcEEEccCccccCcchhhcccccchHHHHHHhhCcE
Confidence 2288888999999999999
Q ss_pred EEEcCCCC
Q 021170 264 VILEGMGR 271 (316)
Q Consensus 264 IIsKGmGn 271 (316)
||-||==|
T Consensus 355 vIFKGDLN 362 (434)
T KOG3870|consen 355 VIFKGDLN 362 (434)
T ss_pred EEEecccc
Confidence 99999888
No 6
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.07 E-value=0.81 Score=40.58 Aligned_cols=51 Identities=31% Similarity=0.343 Sum_probs=42.8
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL 266 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs 266 (316)
..+++++++ +|| + .+.. +++.|.++|.+|.-.++-.+++.+.+.+||+||+
T Consensus 43 ~gk~vlViG--~G~-~-~G~~-~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIs 93 (168)
T cd01080 43 AGKKVVVVG--RSN-I-VGKP-LAALLLNRNATVTVCHSKTKNLKEHTKQADIVIV 93 (168)
T ss_pred CCCEEEEEC--CcH-H-HHHH-HHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEE
Confidence 468899886 488 4 3766 9999999999887777778899999999999987
No 7
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=75.99 E-value=0.92 Score=45.41 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=62.4
Q ss_pred HHHHHHHH-HHHcCCcchHH--HHHHHHHHHHHHhHHHHHHHhhhhh----hhhhHHHHHH--HHHHhhcccccchhh-H
Q 021170 103 LCRLREQV-LRELGFRDIFK--KVKDEENAKAISLFGDVVRLNDVIE----DEGKRVESLI--RGIFAGNIFDLGSAQ-L 172 (316)
Q Consensus 103 ~~~~~e~~-~~~~G~~Dpy~--~~K~~~N~~Al~~~p~l~~~ld~i~----~~~d~l~~ai--k~aiaGN~iD~Ga~~-~ 172 (316)
-.+.-+.+ .+.||-+|--- ++=.--.++++.++.-++.- |.+- ..-|.|...| ++--.|+..|||+.. .
T Consensus 55 GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpG-D~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~ 133 (403)
T PF06838_consen 55 GRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLRPG-DELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYRE 133 (403)
T ss_dssp HHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT--EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE
T ss_pred cHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCCCC-CeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEE
Confidence 33444444 46688887442 33344567788888877753 2221 2235566655 233478999999753 5
Q ss_pred HHhhccCCCcHHHHHhhhc----------------CCCCCCCcHHHHHHHhcccCCCeEEEEecCC
Q 021170 173 AEVFSKDGMSFLASCQNLV----------------PRPWVIDDLETFKVKWSKKAWKKAVIFVDNS 222 (316)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~----------------~~p~~idd~~~~~~~l~~~~~k~vl~~~DNa 222 (316)
+++.+.+++|++...+.+- .+.|.+++..+..+.++ .-...+++|+|||
T Consensus 134 v~L~~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk-~~~p~~iifVDNC 198 (403)
T PF06838_consen 134 VPLTEDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVK-EINPDVIIFVDNC 198 (403)
T ss_dssp --B-TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHH-HH-TTSEEEEE-T
T ss_pred EeecCCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHH-hhCCCeEEEEeCC
Confidence 6677777888876544432 23477788777776663 3345689999997
No 8
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=73.49 E-value=4.2 Score=35.07 Aligned_cols=53 Identities=26% Similarity=0.346 Sum_probs=40.7
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEG 268 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKG 268 (316)
..+++++++-+ +. .+ -||+..|.++|..|+-.+.-++.+.+...+||+||+==
T Consensus 27 ~gk~v~VvGrs-~~---vG-~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAt 79 (140)
T cd05212 27 DGKKVLVVGRS-GI---VG-APLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGS 79 (140)
T ss_pred CCCEEEEECCC-ch---HH-HHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEec
Confidence 46778877543 22 35 45999999999999766666778889999999998743
No 9
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.65 E-value=7.4 Score=37.60 Aligned_cols=51 Identities=27% Similarity=0.372 Sum_probs=41.3
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL 266 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs 266 (316)
..+++++++ .|+ + .|+. ++..|.++|..|+-..+-+..+.+.+.+||+||+
T Consensus 157 ~Gk~vvVIG--rs~-~-VG~p-la~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIs 207 (286)
T PRK14175 157 EGKNAVVIG--RSH-I-VGQP-VSKLLLQKNASVTILHSRSKDMASYLKDADVIVS 207 (286)
T ss_pred CCCEEEEEC--CCc-h-hHHH-HHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEE
Confidence 467888885 566 5 4755 9999999999996666667889999999999886
No 10
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.60 E-value=11 Score=32.57 Aligned_cols=63 Identities=29% Similarity=0.332 Sum_probs=45.1
Q ss_pred cHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHh-----------CCCceeeCCCCCHHHHHHh----ccCCE
Q 021170 199 DLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLR-----------RGTQVIDLTAVSQELAYLA----SDADL 263 (316)
Q Consensus 199 d~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~-----------~g~~VidL~~~S~e~~~~~----~~ADL 263 (316)
..+.+++.+ .+++++++-+-|.-. |+ -|...++ -.+.--|+.+++.=++.++ .+|||
T Consensus 25 Eve~ireyi--~sA~r~vV~t~N~~K---~~---aindvlrrf~l~Eaeml~~~T~~ADlTrmPA~tKalmaldis~ADl 96 (156)
T COG4019 25 EVEKIREYI--VSAKRIVVATNNQKK---FK---AINDVLRRFCLAEAEMLDIDTRFADLTRMPALTKALMALDISKADL 96 (156)
T ss_pred HHHHHHHHH--hccceEEEecCCHHH---HH---HHHHHHHHhccchHHHhcCccchhhcccChHHHHHHHhccccCCcE
Confidence 345667777 789999999998755 33 2233222 2233378999999999887 48999
Q ss_pred EEEcCC
Q 021170 264 VILEGM 269 (316)
Q Consensus 264 IIsKGm 269 (316)
||+.|-
T Consensus 97 vIARGR 102 (156)
T COG4019 97 VIARGR 102 (156)
T ss_pred EEeecc
Confidence 999984
No 11
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=67.52 E-value=19 Score=32.57 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=46.8
Q ss_pred HHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhC-CCceeeCCCC-CHHHHHHhccCCEEEEcCCCC
Q 021170 201 ETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRR-GTQVIDLTAV-SQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 201 ~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~-g~~VidL~~~-S~e~~~~~~~ADLIIsKGmGn 271 (316)
+++..++. ++..+++|+.-.++..--.-.. +.+.+.+. |.++..+... .++..+.+.+||+|+.=| ||
T Consensus 21 ~~~l~~~~-~~~~~i~~IptAs~~~~~~~~~-~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~G-G~ 90 (212)
T cd03146 21 DDLLLSLT-KARPKVLFVPTASGDRDEYTAR-FYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGG-GN 90 (212)
T ss_pred HHHHHHhc-cCCCeEEEECCCCCCHHHHHHH-HHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECC-ch
Confidence 34444431 3567899999999852222334 56677788 9888332222 667789999999999999 99
No 12
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=65.60 E-value=9.9 Score=30.03 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=28.9
Q ss_pred HHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 233 FARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 233 Li~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
.-+.|.++|.+|++|+..+ -++.+|-||..|+.+
T Consensus 13 v~~~L~~~GyeVv~l~~~~-----~~~~~daiVvtG~~~ 46 (80)
T PF03698_consen 13 VKEALREKGYEVVDLENEQ-----DLQNVDAIVVTGQDT 46 (80)
T ss_pred HHHHHHHCCCEEEecCCcc-----ccCCcCEEEEECCCc
Confidence 5678999999999999554 467899999999998
No 13
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=57.92 E-value=52 Score=29.48 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=43.9
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCC----CCHHHHHHhccCCEEEEcCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTA----VSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~----~S~e~~~~~~~ADLIIsKGmGn 271 (316)
...+++|+.--++.+--.... +.+.+.+.|.++..+.. -++++.+.+.+||.|+.-| ||
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~-~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~G-G~ 90 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEE-YRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGG-GN 90 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHH-HHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcC-Cc
Confidence 467899998887642222234 67777888988844333 3489999999999999999 99
No 14
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=57.63 E-value=11 Score=33.40 Aligned_cols=55 Identities=29% Similarity=0.437 Sum_probs=39.5
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
..|++++++ -+. + +| .|++-.|.++|..|+-...-++.+.+...+||+||+ ++|.
T Consensus 35 ~Gk~v~VvG--rs~-~-VG-~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVs-a~G~ 89 (160)
T PF02882_consen 35 EGKKVVVVG--RSN-I-VG-KPLAMLLLNKGATVTICHSKTKNLQEITRRADIVVS-AVGK 89 (160)
T ss_dssp TT-EEEEE---TTT-T-TH-HHHHHHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE--SSS
T ss_pred CCCEEEEEC--CcC-C-CC-hHHHHHHHhCCCeEEeccCCCCcccceeeeccEEee-eecc
Confidence 467888875 344 3 57 569999999999997777777899999999998887 3344
No 15
>PRK02947 hypothetical protein; Provisional
Probab=55.99 E-value=1.2e+02 Score=28.16 Aligned_cols=55 Identities=31% Similarity=0.290 Sum_probs=38.9
Q ss_pred cCCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCH---------HHHHHhccCCEEEE
Q 021170 210 KAWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQ---------ELAYLASDADLVIL 266 (316)
Q Consensus 210 ~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~---------e~~~~~~~ADLIIs 266 (316)
-..+-++++..++|+.- +.+..++.++++|.+||-+..-.. +-..+.+-||++|.
T Consensus 104 ~~~~Dv~i~iS~sG~t~--~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~ 167 (246)
T PRK02947 104 IRPGDVLIVVSNSGRNP--VPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLD 167 (246)
T ss_pred CCCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEE
Confidence 35567999999999943 566688999999999976655431 12334446888884
No 16
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=55.05 E-value=1.9e+02 Score=27.32 Aligned_cols=143 Identities=18% Similarity=0.143 Sum_probs=89.5
Q ss_pred CcchHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhHHHHHHHHHHhhc-ccccchhhHHHhhccCCCcHHHHHhhhcCCC
Q 021170 116 FRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGN-IFDLGSAQLAEVFSKDGMSFLASCQNLVPRP 194 (316)
Q Consensus 116 ~~Dpy~~~K~~~N~~Al~~~p~l~~~ld~i~~~~d~l~~aik~aiaGN-~iD~Ga~~~~~~~~~~~~~~~~~~~~~~~~p 194 (316)
..|....+.++-.......+......+| ++.|..++....... ++=||.... ... .-++..-+.++-.+-
T Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~t~~~l~-----~~~l~~av~~L~~A~rI~~~G~g~S-~~v---A~~~~~~l~~ig~~~ 159 (281)
T COG1737 89 EDDGPESILEKLLAANIAALERTLNLLD-----EEALERAVELLAKARRIYFFGLGSS-GLV---ASDLAYKLMRIGLNV 159 (281)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHcCCeEEEEEechh-HHH---HHHHHHHHHHcCCce
Confidence 3456665666666666666666666543 367888888888555 555663321 000 124555666766666
Q ss_pred CCCCcHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 195 WVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 195 ~~idd~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
..++|...+...+..-..+.+++...++|+ . -..+..++..+++|.+||-+...... .+.+-||+++.=....
T Consensus 160 ~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~-t-~e~i~~a~~ak~~ga~vIaiT~~~~s--pla~~Ad~~L~~~~~~ 232 (281)
T COG1737 160 VALSDTHGQLMQLALLTPGDVVIAISFSGY-T-REIVEAAELAKERGAKVIAITDSADS--PLAKLADIVLLVPVAE 232 (281)
T ss_pred eEecchHHHHHHHHhCCCCCEEEEEeCCCC-c-HHHHHHHHHHHHCCCcEEEEcCCCCC--chhhhhceEEeccCcc
Confidence 788887766533322456679999999999 5 36676888889999999665544111 1234577777654444
No 17
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=53.50 E-value=11 Score=37.31 Aligned_cols=109 Identities=20% Similarity=0.282 Sum_probs=66.7
Q ss_pred HHcCCcchHHH--HHHHHHHHHHHhHHHHHHHhhhh----hhhhhHHHHH--HHHHHhhcccccchhh-HHHhhccCCCc
Q 021170 112 RELGFRDIFKK--VKDEENAKAISLFGDVVRLNDVI----EDEGKRVESL--IRGIFAGNIFDLGSAQ-LAEVFSKDGMS 182 (316)
Q Consensus 112 ~~~G~~Dpy~~--~K~~~N~~Al~~~p~l~~~ld~i----~~~~d~l~~a--ik~aiaGN~iD~Ga~~-~~~~~~~~~~~ 182 (316)
+.+|-++..-. +=.--.++|..++.-++.- |.+ ...-|.|++. +++--.|-..|||+.. .+++-..|.+|
T Consensus 76 ~vf~aE~a~VRpq~isGTHAI~~aLfg~LRpg-Dell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~Lt~~gkiD 154 (416)
T COG4100 76 QVFGAEAALVRPQIISGTHAIACALFGILRPG-DELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAVPLTADGKID 154 (416)
T ss_pred HHhccccceeeeeeecchhHHHHHHHhccCCC-CeEEEecCCcchhHHHHhccCCCCcccHHHhCcceeecccccCCccc
Confidence 44666654432 2222346677777766642 222 1334677765 4566688999999864 23334355678
Q ss_pred HHHHHhhhcC---------------CC-CCCCcHHHHHHHhcccCCCeEEEEecCC
Q 021170 183 FLASCQNLVP---------------RP-WVIDDLETFKVKWSKKAWKKAVIFVDNS 222 (316)
Q Consensus 183 ~~~~~~~~~~---------------~p-~~idd~~~~~~~l~~~~~k~vl~~~DNa 222 (316)
++.....+-. || |.|++.++..+.+. .-..++++|+|||
T Consensus 155 ~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk-~inpn~ivFVDNC 209 (416)
T COG4100 155 IQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVK-EINPNVIVFVDNC 209 (416)
T ss_pred HHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHH-hcCCCEEEEEecc
Confidence 7665443322 22 67788888887774 4567899999997
No 18
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=53.15 E-value=23 Score=29.38 Aligned_cols=64 Identities=27% Similarity=0.207 Sum_probs=40.3
Q ss_pred HHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHh-CCCce---------ee---------CCC-CCHHHHHHhcc
Q 021170 201 ETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLR-RGTQV---------ID---------LTA-VSQELAYLASD 260 (316)
Q Consensus 201 ~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~-~g~~V---------id---------L~~-~S~e~~~~~~~ 260 (316)
++..+.| .++++.++++++-.. . .+--+-+++|.+ .|.+| ++ +.. -++...+++++
T Consensus 2 ~~~~~~L--~~A~rP~il~G~g~~-~-~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~ 77 (137)
T PF00205_consen 2 DEAADLL--SSAKRPVILAGRGAR-R-SGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQ 77 (137)
T ss_dssp HHHHHHH--HH-SSEEEEE-HHHH-H-TTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHH
T ss_pred HHHHHHH--HhCCCEEEEEcCCcC-h-hhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcC
Confidence 3456666 568888887776333 1 233445566544 47777 22 122 27899999999
Q ss_pred CCEEEEcC
Q 021170 261 ADLVILEG 268 (316)
Q Consensus 261 ADLIIsKG 268 (316)
||+||+=|
T Consensus 78 aDlvl~iG 85 (137)
T PF00205_consen 78 ADLVLAIG 85 (137)
T ss_dssp SSEEEEES
T ss_pred CCEEEEEC
Confidence 99999999
No 19
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.12 E-value=18 Score=35.00 Aligned_cols=55 Identities=29% Similarity=0.520 Sum_probs=43.2
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
..+++++++ .|. + .| -|++..|+++|..|+-...-++++.+...+||+||+ ..|+
T Consensus 156 ~Gk~vvVvG--rs~-~-VG-~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~-AvG~ 210 (285)
T PRK14191 156 KGKDVVIIG--ASN-I-VG-KPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCV-GVGK 210 (285)
T ss_pred CCCEEEEEC--CCc-h-hH-HHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEE-ecCC
Confidence 468898886 344 4 57 469999999999996666677889999999998886 3455
No 20
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=52.19 E-value=14 Score=32.45 Aligned_cols=63 Identities=30% Similarity=0.325 Sum_probs=34.4
Q ss_pred cHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhCC----------CceeeCCCCCHHHHHHh----ccCCEE
Q 021170 199 DLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRG----------TQVIDLTAVSQELAYLA----SDADLV 264 (316)
Q Consensus 199 d~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g----------~~VidL~~~S~e~~~~~----~~ADLI 264 (316)
..+..++.+ .+++++++-+-|--- |+.+ -+.|.+-| |+.-||.|++.=.+.++ .+||||
T Consensus 24 Ev~~Ir~~I--~nakkIvV~t~N~kK---f~vi--~~il~~~~~~~i~~l~i~Tn~aDlTrmPA~~K~LmavD~~dADlv 96 (154)
T PF11576_consen 24 EVEAIREYI--LNAKKIVVATNNEKK---FKVI--NDILSKFNLPEIEMLDIPTNSADLTRMPALSKALMAVDISDADLV 96 (154)
T ss_dssp HHHHHHHHH--HH-S-EEE----HHH---HHHH--HHHHHHTT----EE--S--GGGGGSSSHHHHHHHHHHHHH--SEE
T ss_pred HHHHHHHHH--hcCceEEEecCCchH---hHHH--HHHHHHhcCCccceeeccCcchhcccCcHHHhHHHheeccCCcEE
Confidence 345667777 679999888777332 3322 22222222 33388999988777776 489999
Q ss_pred EEcC
Q 021170 265 ILEG 268 (316)
Q Consensus 265 IsKG 268 (316)
|+.|
T Consensus 97 IARG 100 (154)
T PF11576_consen 97 IARG 100 (154)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 9997
No 21
>PRK03094 hypothetical protein; Provisional
Probab=50.97 E-value=24 Score=27.92 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=28.7
Q ss_pred HHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 232 PFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 232 PLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
++-++|.++|.+|++|+.-.. .+.+|-||..|+.+
T Consensus 12 ~i~~~L~~~GYeVv~l~~~~~-----~~~~Da~VitG~d~ 46 (80)
T PRK03094 12 DVQQALKQKGYEVVQLRSEQD-----AQGCDCCVVTGQDS 46 (80)
T ss_pred HHHHHHHHCCCEEEecCcccc-----cCCcCEEEEeCCCc
Confidence 356789999999999975333 57899999999987
No 22
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.85 E-value=16 Score=35.59 Aligned_cols=51 Identities=29% Similarity=0.358 Sum_probs=41.2
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL 266 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs 266 (316)
..|++++++- |. + .| .|++..|++.|..|+-..+-++...++..+||+||+
T Consensus 158 ~Gk~V~vIG~--s~-i-vG-~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIs 208 (301)
T PRK14194 158 TGKHAVVIGR--SN-I-VG-KPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVA 208 (301)
T ss_pred CCCEEEEECC--CC-c-cH-HHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEE
Confidence 4688888753 33 3 46 469999999999998887777889999999998876
No 23
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.88 E-value=20 Score=34.81 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=38.6
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL 266 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs 266 (316)
..+++++++- +| +.| .|++..|+++|..|+-.+.-++.+.++..+||+||+
T Consensus 157 ~Gk~V~viGr-s~---~mG-~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIs 207 (296)
T PRK14188 157 SGLNAVVIGR-SN---LVG-KPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVA 207 (296)
T ss_pred CCCEEEEEcC-Cc---chH-HHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEE
Confidence 4678888752 22 246 579999999999997775445678899999998776
No 24
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=44.98 E-value=55 Score=30.55 Aligned_cols=19 Identities=37% Similarity=0.686 Sum_probs=14.4
Q ss_pred HHHHHHhccCCEEEEcCCCC
Q 021170 252 QELAYLASDADLVILEGMGR 271 (316)
Q Consensus 252 ~e~~~~~~~ADLIIsKGmGn 271 (316)
+++.+.+ ++|+||.+|-.+
T Consensus 78 ~~ll~~l-~~DlvlVEGfk~ 96 (229)
T PRK14494 78 NEILSLL-DADFLLIEGFKE 96 (229)
T ss_pred HHHHhhc-CCCEEEEeCCCC
Confidence 3444444 799999999988
No 25
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.37 E-value=23 Score=34.21 Aligned_cols=55 Identities=22% Similarity=0.368 Sum_probs=42.8
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
..+++++++ -+. + .| -|++-.|.++|..|+-...-++.+.+...+||+||+ +.|.
T Consensus 157 ~Gk~vvViG--rS~-~-VG-kPla~lL~~~~ATVt~chs~T~dl~~~~k~ADIvIs-AvGk 211 (282)
T PRK14180 157 EGAYAVVVG--ASN-V-VG-KPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIV-AVGK 211 (282)
T ss_pred CCCEEEEEC--CCC-c-ch-HHHHHHHHHCCCEEEEEcCCCCCHHHHhhhcCEEEE-ccCC
Confidence 467888875 444 4 57 569999999999997777777889999999998876 3444
No 26
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=44.37 E-value=18 Score=33.78 Aligned_cols=27 Identities=48% Similarity=0.652 Sum_probs=24.7
Q ss_pred eeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 245 IDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 245 idL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
|+++.++..+.+.-+.+|.||.||=|=
T Consensus 91 I~~~~l~~~l~~l~~~~d~vlVEGAGG 117 (223)
T COG0132 91 IDLEKLSQGLRQLLKKYDLVLVEGAGG 117 (223)
T ss_pred ccHHHHHHHHHhhhcccCEEEEeCCCc
Confidence 788888888888889999999999998
No 27
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.29 E-value=25 Score=33.91 Aligned_cols=55 Identities=33% Similarity=0.447 Sum_probs=42.1
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
..+++++++ -+. +.| -|++-.|+++|..|+-...-++.+.+...+||+||+ ++|.
T Consensus 156 ~Gk~vvVvG--rS~--iVG-kPla~lL~~~~atVt~chs~T~nl~~~~~~ADIvIs-AvGk 210 (282)
T PRK14166 156 EGKDAVIIG--ASN--IVG-RPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIV-AAGC 210 (282)
T ss_pred CCCEEEEEC--CCC--cch-HHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEE-cCCC
Confidence 467888874 344 357 469999999999997766677889999999998876 3444
No 28
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.21 E-value=25 Score=34.26 Aligned_cols=56 Identities=30% Similarity=0.392 Sum_probs=43.2
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE-cCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL-EGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs-KGmGn 271 (316)
..|++++++ -+. + .| .|++-.|.++|..|+-...-++.+.+...+||+||+ -|-.+
T Consensus 157 ~Gk~vvVIG--rS~-i-VG-kPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvIsAvGkp~ 213 (297)
T PRK14186 157 AGKKAVVVG--RSI-L-VG-KPLALMLLAANATVTIAHSRTQDLASITREADILVAAAGRPN 213 (297)
T ss_pred CCCEEEEEC--CCc-c-ch-HHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcC
Confidence 468888885 344 4 57 569999999999997666667889999999998886 34444
No 29
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=43.15 E-value=20 Score=31.61 Aligned_cols=15 Identities=40% Similarity=0.629 Sum_probs=13.0
Q ss_pred hccCCEEEEcCCCCC
Q 021170 258 ASDADLVILEGMGRG 272 (316)
Q Consensus 258 ~~~ADLIIsKGmGn~ 272 (316)
-.++|+||.+|.|..
T Consensus 97 ~~~~D~vlVEGag~~ 111 (199)
T PF13500_consen 97 AEEYDVVLVEGAGGL 111 (199)
T ss_dssp HTTTCEEEEEESSST
T ss_pred hhcCCEEEEeCCccc
Confidence 458999999999993
No 30
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.62 E-value=26 Score=33.92 Aligned_cols=55 Identities=27% Similarity=0.361 Sum_probs=43.1
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
..|++++++ -+. + .| -|++-.|+++|..|+-...-++.+.+...+||+||+ +.|.
T Consensus 158 ~Gk~vvViG--rS~-i-VG-kPla~lL~~~~atVt~chs~T~~l~~~~~~ADIvIs-AvGk 212 (284)
T PRK14177 158 TGKNAVVVG--RSP-I-LG-KPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVG-AVGK 212 (284)
T ss_pred CCCEEEEEC--CCC-c-ch-HHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEE-eCCC
Confidence 467888885 344 4 57 569999999999997767677889999999998885 5555
No 31
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.17 E-value=25 Score=34.01 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=42.6
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
..+++++++ -|. + .| -|++..|+++|..|+-...-++.+.+...+||+||+ +.|.
T Consensus 158 ~Gk~vvViG--rs~-i-VG-~Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~-avG~ 212 (285)
T PRK10792 158 YGLNAVVVG--ASN-I-VG-RPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVV-AVGK 212 (285)
T ss_pred CCCEEEEEC--CCc-c-cH-HHHHHHHHHCCCeEEEEECCCCCHHHHHhhCCEEEE-cCCC
Confidence 367888875 344 4 57 469999999999996666667889999999998886 4444
No 32
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.95 E-value=26 Score=34.00 Aligned_cols=56 Identities=27% Similarity=0.393 Sum_probs=42.9
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE-cCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL-EGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs-KGmGn 271 (316)
..|++++++ -+. + .| -|++-.|+++|..|+-...-++.+.+...+||+||+ -|-.+
T Consensus 159 ~Gk~vvViG--rS~-i-VG-kPla~lL~~~~aTVt~chs~T~~l~~~~~~ADIvVsAvGkp~ 215 (294)
T PRK14187 159 SGSDAVVIG--RSN-I-VG-KPMACLLLGENCTVTTVHSATRDLADYCSKADILVAAVGIPN 215 (294)
T ss_pred CCCEEEEEC--CCc-c-ch-HHHHHHHhhCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcC
Confidence 467888875 344 4 57 569999999999997766667789999999998776 34444
No 33
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.25 E-value=28 Score=33.68 Aligned_cols=56 Identities=27% Similarity=0.466 Sum_probs=42.6
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE-cCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL-EGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs-KGmGn 271 (316)
..|++++++ .+. + .| .|++-.|+++|..|+-...-++.+.+...+||+||+ -|-.+
T Consensus 156 ~Gk~vvVvG--rS~-i-VG-kPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~~~ 212 (284)
T PRK14170 156 EGKRAVVIG--RSN-I-VG-KPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAK 212 (284)
T ss_pred CCCEEEEEC--CCC-c-ch-HHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcC
Confidence 568888885 455 4 57 569999999999996666666789999999998776 34444
No 34
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.16 E-value=29 Score=33.57 Aligned_cols=51 Identities=29% Similarity=0.372 Sum_probs=40.2
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL 266 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs 266 (316)
..+++++++ .|. + .|+ |++..|+++|..|+-...-++.+.+...+||+||+
T Consensus 157 ~Gk~vvViG--rs~-i-VGk-Pla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~ 207 (285)
T PRK14189 157 RGAHAVVIG--RSN-I-VGK-PMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVA 207 (285)
T ss_pred CCCEEEEEC--CCC-c-cHH-HHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEE
Confidence 467888885 455 4 474 59999999999996655667789999999998876
No 35
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.02 E-value=30 Score=33.37 Aligned_cols=55 Identities=27% Similarity=0.389 Sum_probs=42.0
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
..+++++++ -|. + .| .|++-.|+++|..|+-...-++++.+...+||+||+ +.|+
T Consensus 156 ~Gk~vvViG--rS~-~-VG-~Pla~lL~~~~AtVti~hs~T~~l~~~~~~ADIvV~-AvGk 210 (281)
T PRK14183 156 KGKDVCVVG--ASN-I-VG-KPMAALLLNANATVDICHIFTKDLKAHTKKADIVIV-GVGK 210 (281)
T ss_pred CCCEEEEEC--CCC-c-ch-HHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEE-ecCc
Confidence 567888885 344 4 57 569999999999996555667889999999998876 3444
No 36
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=40.94 E-value=12 Score=32.24 Aligned_cols=52 Identities=25% Similarity=0.334 Sum_probs=35.6
Q ss_pred cCCCeEEEEecCCCchhhhchHHHHHHHHhCCCce--eeCCC----------CCHHHHHHhccCCEEEEcCCC
Q 021170 210 KAWKKAVIFVDNSGADIILGILPFARELLRRGTQV--IDLTA----------VSQELAYLASDADLVILEGMG 270 (316)
Q Consensus 210 ~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V--idL~~----------~S~e~~~~~~~ADLIIsKGmG 270 (316)
.+.++|.+++= .=|+++.|++++.+| +|++. -+.+..+++.+||+||+=|+-
T Consensus 9 ~~~~~V~~VG~---------f~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsT 72 (147)
T PF04016_consen 9 GPGDKVGMVGY---------FQPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGST 72 (147)
T ss_dssp TTTSEEEEES-----------HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHH
T ss_pred cCCCEEEEEcC---------cHHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeee
Confidence 45666666532 127899999888877 55544 344677888999999999973
No 37
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.90 E-value=33 Score=33.17 Aligned_cols=51 Identities=27% Similarity=0.389 Sum_probs=40.9
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL 266 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs 266 (316)
..+++++++ -+. + .| -|++-.|+++|..|+-...-++.+.+...+||+||+
T Consensus 157 ~Gk~vvViG--rS~-i-VG-~Pla~lL~~~~atVt~chs~t~~l~~~~~~ADIvI~ 207 (284)
T PRK14190 157 SGKHVVVVG--RSN-I-VG-KPVGQLLLNENATVTYCHSKTKNLAELTKQADILIV 207 (284)
T ss_pred CCCEEEEEC--CCC-c-cH-HHHHHHHHHCCCEEEEEeCCchhHHHHHHhCCEEEE
Confidence 467888885 344 4 57 569999999999996666677889999999998886
No 38
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.49 E-value=29 Score=33.54 Aligned_cols=55 Identities=33% Similarity=0.486 Sum_probs=40.7
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
..|++++++- +| + .| .|++..|++.|..|+-...-++.+.+...+||+||+ ..|+
T Consensus 157 ~Gk~v~vIG~-S~--i-vG-~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~-avg~ 211 (284)
T PRK14179 157 EGKHAVVIGR-SN--I-VG-KPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVV-AIGR 211 (284)
T ss_pred CCCEEEEECC-CC--c-Cc-HHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEE-ecCc
Confidence 4678888753 22 2 56 569999999999996655556678889999998876 3444
No 39
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=40.25 E-value=21 Score=36.28 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=16.4
Q ss_pred CCCCHHHHHHhccCCEEEEcCCCC
Q 021170 248 TAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 248 ~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
+.+.+.|.++..++|++|.||.|-
T Consensus 65 ~~i~~~~~~~~~~~D~viVEGagG 88 (449)
T TIGR00379 65 AQIQECFHRHSKGTDYSIIEGVRG 88 (449)
T ss_pred HHHHHHHHHhcccCCEEEEecCCc
Confidence 334444555556799999999865
No 40
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.02 E-value=30 Score=33.50 Aligned_cols=56 Identities=29% Similarity=0.382 Sum_probs=41.8
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE-cCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL-EGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs-KGmGn 271 (316)
..+++++++ .+. + .| .|++..|+++|..|+-...-++.+.+...+||+||+ -|-.+
T Consensus 154 ~Gk~vvViG--rS~-i-VG-kPla~lL~~~~aTVtichs~T~~l~~~~~~ADIvIsAvGkp~ 210 (287)
T PRK14173 154 AGKEVVVVG--RSN-I-VG-KPLAALLLREDATVTLAHSKTQDLPAVTRRADVLVVAVGRPH 210 (287)
T ss_pred CCCEEEEEC--CCC-c-cH-HHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcC
Confidence 467888874 344 3 57 569999999999996666666788999999998776 34444
No 41
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=39.93 E-value=31 Score=33.62 Aligned_cols=55 Identities=29% Similarity=0.412 Sum_probs=43.7
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
..+++++++ -+. + .| -|++-.|+++|..|+-...-++.+.+...+||+||+= .|.
T Consensus 166 ~Gk~vvVIG--RS~-i-VG-kPla~lL~~~~ATVtvchs~T~nl~~~~~~ADIvv~A-vGk 220 (299)
T PLN02516 166 KGKKAVVVG--RSN-I-VG-LPVSLLLLKADATVTVVHSRTPDPESIVREADIVIAA-AGQ 220 (299)
T ss_pred CCCEEEEEC--CCc-c-ch-HHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEc-CCC
Confidence 468888885 445 4 57 5699999999999977767778899999999988873 565
No 42
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.23 E-value=31 Score=33.25 Aligned_cols=55 Identities=25% Similarity=0.416 Sum_probs=42.6
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
..|++++++- +. + .| -|++-.|+++|..|+-...-++.+.+...+||+||+ +.|.
T Consensus 157 ~Gk~vvViGr--S~-~-VG-kPla~lL~~~~AtVt~chs~T~~l~~~~~~ADIvIs-AvGk 211 (278)
T PRK14172 157 EGKEVVVIGR--SN-I-VG-KPVAQLLLNENATVTICHSKTKNLKEVCKKADILVV-AIGR 211 (278)
T ss_pred CCCEEEEECC--Cc-c-ch-HHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEE-cCCC
Confidence 5688888853 44 3 57 569999999999996666667889999999998886 4454
No 43
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=39.13 E-value=46 Score=27.80 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=23.3
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCc-e
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQ-V 244 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~-V 244 (316)
+.++++++| +|+ + .+. .+..|..+|.+ |
T Consensus 11 ~~~~vlviG--aGg-~--ar~-v~~~L~~~g~~~i 39 (135)
T PF01488_consen 11 KGKRVLVIG--AGG-A--ARA-VAAALAALGAKEI 39 (135)
T ss_dssp TTSEEEEES--SSH-H--HHH-HHHHHHHTTSSEE
T ss_pred CCCEEEEEC--CHH-H--HHH-HHHHHHHcCCCEE
Confidence 578999999 699 4 778 89999999876 6
No 44
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=39.04 E-value=29 Score=29.29 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCcchHHHHHHHHH
Q 021170 103 LCRLREQVLRELGFRDIFKKVKDEEN 128 (316)
Q Consensus 103 ~~~~~e~~~~~~G~~Dpy~~~K~~~N 128 (316)
+.+--+.+.|..|.+|||-.+|+---
T Consensus 55 laEpIQTvmRr~g~~~pYE~LK~lTR 80 (115)
T PF08328_consen 55 LAEPIQTVMRRYGIPNPYEKLKELTR 80 (115)
T ss_dssp GHHHHHHHHHHTT-SSHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHc
Confidence 77889999999999999999997543
No 45
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.03 E-value=30 Score=33.49 Aligned_cols=56 Identities=29% Similarity=0.418 Sum_probs=43.4
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE-cCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL-EGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs-KGmGn 271 (316)
..+++++++ .|. + .|+ |++..|+++|..|+-...-++.+.+...+||+||+ -|-.+
T Consensus 163 ~Gk~vvViG--rs~-i-VGk-Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~AvG~p~ 219 (287)
T PRK14176 163 EGKNAVIVG--HSN-V-VGK-PMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKH 219 (287)
T ss_pred CCCEEEEEC--CCc-c-cHH-HHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEEccCCcc
Confidence 467888875 444 4 574 69999999999996666667789999999999886 66665
No 46
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.92 E-value=33 Score=33.13 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=42.0
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE-cCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL-EGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs-KGmGn 271 (316)
..|++++++ -+. + .| -|++-.|+++|..|+-...-++.+.+...+||+||+ -|-.+
T Consensus 155 ~Gk~vvViG--rS~-i-VG-kPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~p~ 211 (282)
T PRK14169 155 AGKRVVIVG--RSN-I-VG-RPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVVAVGVPH 211 (282)
T ss_pred CCCEEEEEC--CCc-c-ch-HHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEccCCcC
Confidence 468888875 344 4 57 569999999999996665566778999999998776 34444
No 47
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=37.76 E-value=37 Score=30.36 Aligned_cols=78 Identities=23% Similarity=0.205 Sum_probs=43.2
Q ss_pred CcHHHHHhhhcCCCCCCCcHHHHHHHhcccCCCeEEE-EecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhc
Q 021170 181 MSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVI-FVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLAS 259 (316)
Q Consensus 181 ~~~~~~~~~~~~~p~~idd~~~~~~~l~~~~~k~vl~-~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~ 259 (316)
..|+..++-++. ++|.+.|.+.+..++++ ++-+ - +.|+.= +++..+.|.=.||-=+-|+++.+-++
T Consensus 13 T~Fd~LI~~Vl~--------~~~~~~L~k~G~~kLiiQ~Grg--~-~~~~d~--~~~~~k~~gl~id~y~f~psl~e~I~ 79 (170)
T KOG3349|consen 13 TSFDDLISCVLS--------EEFLQELQKRGFTKLIIQIGRG--Q-PFFGDP--IDLIRKNGGLTIDGYDFSPSLTEDIR 79 (170)
T ss_pred ccHHHHHHHHcC--------HHHHHHHHHcCccEEEEEecCC--c-cCCCCH--HHhhcccCCeEEEEEecCccHHHHHh
Confidence 346666665533 45566664334555443 3333 1 222211 12222233333666677899999999
Q ss_pred cCCEEEEcCCCC
Q 021170 260 DADLVILEGMGR 271 (316)
Q Consensus 260 ~ADLIIsKGmGn 271 (316)
+|||||+-+=+-
T Consensus 80 ~AdlVIsHAGaG 91 (170)
T KOG3349|consen 80 SADLVISHAGAG 91 (170)
T ss_pred hccEEEecCCcc
Confidence 999999986444
No 48
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=37.63 E-value=49 Score=29.28 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=18.1
Q ss_pred CCCCC-H---HHHHHhccC-CEEEEcCCCC
Q 021170 247 LTAVS-Q---ELAYLASDA-DLVILEGMGR 271 (316)
Q Consensus 247 L~~~S-~---e~~~~~~~A-DLIIsKGmGn 271 (316)
+.+.+ . .+.+.+... |+||.||-=+
T Consensus 74 ~~~~~~~~L~~vl~~l~~~~D~vLVEGFK~ 103 (161)
T COG1763 74 MTRTPDRDLDAVLSRLDPLLDLVLVEGFKE 103 (161)
T ss_pred EEecCCcCHHHHHHhcCcccCEEEEecccc
Confidence 55556 3 555666666 9999999887
No 49
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=37.46 E-value=22 Score=33.84 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=31.4
Q ss_pred HHHHHHhCCCce-------eeCCCCCHHHHHHhccCCEEEEcC-CCC
Q 021170 233 FARELLRRGTQV-------IDLTAVSQELAYLASDADLVILEG-MGR 271 (316)
Q Consensus 233 Li~eL~~~g~~V-------idL~~~S~e~~~~~~~ADLIIsKG-mGn 271 (316)
|+++|..+|.+| =+++++.+++..+.+++|+||+=| .|-
T Consensus 26 la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGP 72 (255)
T COG1058 26 LADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLGP 72 (255)
T ss_pred HHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCC
Confidence 678888999887 237888899999999999888764 554
No 50
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.40 E-value=36 Score=32.98 Aligned_cols=56 Identities=27% Similarity=0.346 Sum_probs=42.2
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE-cCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL-EGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs-KGmGn 271 (316)
..|++++++ -+. + .| -|++-.|+++|..|+-...-++.+.+...+||+||+ -|-.+
T Consensus 158 ~GK~vvViG--rS~-i-VG-kPla~lL~~~~ATVtichs~T~~L~~~~~~ADIvV~AvGkp~ 214 (288)
T PRK14171 158 TGKNVVIIG--RSN-I-VG-KPLSALLLKENCSVTICHSKTHNLSSITSKADIVVAAIGSPL 214 (288)
T ss_pred CCCEEEEEC--CCC-c-ch-HHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCCC
Confidence 467888885 344 4 57 569999999999996666666789999999998876 34433
No 51
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=36.85 E-value=24 Score=35.79 Aligned_cols=49 Identities=33% Similarity=0.448 Sum_probs=29.7
Q ss_pred CCCchhhhchHHHHHHHHhCCCce-------------------------eeC-----CCCCHHHHHHhccCCEEEEcCCC
Q 021170 221 NSGADIILGILPFARELLRRGTQV-------------------------IDL-----TAVSQELAYLASDADLVILEGMG 270 (316)
Q Consensus 221 NaGEdIVfD~LPLi~eL~~~g~~V-------------------------idL-----~~~S~e~~~~~~~ADLIIsKGmG 270 (316)
++|. .++-.. |++.|+++|.+| +|. +.+.+.|..+-.++|+||.+|.|
T Consensus 14 ~~GK-T~it~~-L~~~L~~~G~~V~~fK~Gpd~~d~~~~~~~~g~~~~~ld~~~~~~~~v~~~~~~~~~~~D~vlVEGag 91 (451)
T PRK01077 14 GSGK-TTVTLG-LMRALRRRGLRVQPFKVGPDYIDPAYHTAATGRPSRNLDSWMMGEELVRALFARAAQGADIAVIEGVM 91 (451)
T ss_pred CCcH-HHHHHH-HHHHHHhCCCCcceeecCCCcccHHHHHHHhCCCcccCCceeCCHHHHHHHHHHhcccCCEEEEECCC
Confidence 3566 555555 777777777655 222 22222233444578999999986
Q ss_pred C
Q 021170 271 R 271 (316)
Q Consensus 271 n 271 (316)
-
T Consensus 92 G 92 (451)
T PRK01077 92 G 92 (451)
T ss_pred c
Confidence 6
No 52
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=36.76 E-value=79 Score=27.43 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=27.5
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCce--eeCCCCCHHHHH
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQV--IDLTAVSQELAY 256 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V--idL~~~S~e~~~ 256 (316)
..+++|+++ .|+ + +.- .++.|++.|.+| ++ ...++++.+
T Consensus 12 ~~~~vlVvG--GG~-v--a~r-ka~~Ll~~ga~V~VIs-p~~~~~l~~ 52 (157)
T PRK06719 12 HNKVVVIIG--GGK-I--AYR-KASGLKDTGAFVTVVS-PEICKEMKE 52 (157)
T ss_pred CCCEEEEEC--CCH-H--HHH-HHHHHHhCCCEEEEEc-CccCHHHHh
Confidence 468899988 677 5 444 678999999988 43 445566655
No 53
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=36.40 E-value=1.1e+02 Score=26.65 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=15.0
Q ss_pred HHHHhccCCEEEEcCCCC
Q 021170 254 LAYLASDADLVILEGMGR 271 (316)
Q Consensus 254 ~~~~~~~ADLIIsKGmGn 271 (316)
+...+.++|+||.+|..+
T Consensus 86 ~~~~~~~~D~vlvEG~k~ 103 (159)
T cd03116 86 LLLRLLDVDLVLVEGFKE 103 (159)
T ss_pred HHhhCCCCCEEEEccCCC
Confidence 445566899999999999
No 54
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.67 E-value=45 Score=32.15 Aligned_cols=55 Identities=25% Similarity=0.297 Sum_probs=41.1
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
..+++++++- |. + .++ |++..|.++|..|+-...-++.+.+...+||+||+ ++|.
T Consensus 151 ~Gk~V~ViGr--s~-~-vGr-pla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~-Avgk 205 (279)
T PRK14178 151 AGKRAVVVGR--SI-D-VGR-PMAALLLNADATVTICHSKTENLKAELRQADILVS-AAGK 205 (279)
T ss_pred CCCEEEEECC--Cc-c-ccH-HHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEE-CCCc
Confidence 3567777753 22 3 464 59999999999997666777889999999999887 3454
No 55
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=35.25 E-value=86 Score=26.01 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=34.3
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCce--eeCC-CCCHHHHHHhc
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQV--IDLT-AVSQELAYLAS 259 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V--idL~-~~S~e~~~~~~ 259 (316)
+...+++++-++ |-.|+++.|+++|.+| +-.. .+|+++....+
T Consensus 99 ~~d~ivLvSgD~------Df~~~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d 144 (149)
T cd06167 99 RIDTIVLVSGDS------DFVPLVERLRELGKRVIVVGFEAKTSRELRKAAD 144 (149)
T ss_pred CCCEEEEEECCc------cHHHHHHHHHHcCCEEEEEccCccChHHHHHhCC
Confidence 467788887766 6689999999999999 4444 88998888765
No 56
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=35.15 E-value=66 Score=27.77 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=13.2
Q ss_pred HHHhccCCEEEEcCCCC
Q 021170 255 AYLASDADLVILEGMGR 271 (316)
Q Consensus 255 ~~~~~~ADLIIsKGmGn 271 (316)
...+...|+||.+|.++
T Consensus 84 l~~~~~~D~vlVEG~k~ 100 (155)
T TIGR00176 84 LDRLPDLDIILVEGFKD 100 (155)
T ss_pred HhhCCCCCEEEECCCCC
Confidence 34444689999999998
No 57
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=34.81 E-value=93 Score=32.83 Aligned_cols=63 Identities=25% Similarity=0.248 Sum_probs=40.9
Q ss_pred HHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHh----------CCCceee-----------CCCCCHHHHHHhccCC
Q 021170 204 KVKWSKKAWKKAVIFVDNSGADIILGILPFARELLR----------RGTQVID-----------LTAVSQELAYLASDAD 262 (316)
Q Consensus 204 ~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~----------~g~~Vid-----------L~~~S~e~~~~~~~AD 262 (316)
.+.+ .++|+-++|+|=+=- -|+.-...++|.. +|+-++| =...+++.++++++||
T Consensus 203 ~~lI--~~ak~p~ILad~~~~--r~~~~~~~~~l~~~t~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD 278 (557)
T COG3961 203 AELI--NKAKKPVILADALVS--RFGLEKELKKLINATGFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESAD 278 (557)
T ss_pred HHHH--hccCCcEEecchhhh--hhhhHHHHHHHHHhcCCCeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCC
Confidence 4444 678999999986432 2454444444433 3443333 2334899999999999
Q ss_pred EEEEcCCC
Q 021170 263 LVILEGMG 270 (316)
Q Consensus 263 LIIsKGmG 270 (316)
+||.=|-=
T Consensus 279 ~il~iG~~ 286 (557)
T COG3961 279 LILTIGVL 286 (557)
T ss_pred EEEEeceE
Confidence 99998853
No 58
>PRK05670 anthranilate synthase component II; Provisional
Probab=34.60 E-value=1.1e+02 Score=26.97 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=35.1
Q ss_pred EEEecCCCchhhhchHHHHHHHHhCCCce--eeCCCCCHHHHHHhccCC-EEEEcCCCC
Q 021170 216 VIFVDNSGADIILGILPFARELLRRGTQV--IDLTAVSQELAYLASDAD-LVILEGMGR 271 (316)
Q Consensus 216 l~~~DNaGEdIVfD~LPLi~eL~~~g~~V--idL~~~S~e~~~~~~~AD-LIIsKGmGn 271 (316)
+++.||..+ |-.- +++.|.++|.+| +.....+.+..+.++ .| |||+=|-|+
T Consensus 2 iliid~~d~---f~~~-i~~~l~~~g~~~~v~~~~~~~~~~~~~~~-~dglIlsgGpg~ 55 (189)
T PRK05670 2 ILLIDNYDS---FTYN-LVQYLGELGAEVVVYRNDEITLEEIEALN-PDAIVLSPGPGT 55 (189)
T ss_pred EEEEECCCc---hHHH-HHHHHHHCCCcEEEEECCCCCHHHHHhCC-CCEEEEcCCCCC
Confidence 678899999 5555 899999999888 444444444444443 56 555577777
No 59
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.54 E-value=42 Score=32.47 Aligned_cols=56 Identities=27% Similarity=0.319 Sum_probs=42.2
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE-cCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL-EGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs-KGmGn 271 (316)
..|++++++ -+. + .| .|++-.|.++|..|+-...-++.+.+...+||+||+ -|-.+
T Consensus 156 ~Gk~vvViG--rS~-i-VG-kPla~lL~~~~AtVtichs~T~nl~~~~~~ADIvI~AvGk~~ 212 (282)
T PRK14182 156 KGKRALVVG--RSN-I-VG-KPMAMMLLERHATVTIAHSRTADLAGEVGRADILVAAIGKAE 212 (282)
T ss_pred CCCEEEEEC--CCC-c-ch-HHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcC
Confidence 568888885 344 4 57 569999999999996655567789999999998776 34333
No 60
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=34.46 E-value=76 Score=30.38 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=36.7
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCC----------------HHHHHHhccCCEEEE
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVS----------------QELAYLASDADLVIL 266 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S----------------~e~~~~~~~ADLIIs 266 (316)
..+++++++ +|. + ++. ++..|++.|.+|+-.++-+ +++.+.+.++|+||.
T Consensus 151 ~g~kvlViG--~G~-i--G~~-~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 151 HGSNVLVLG--FGR-T--GMT-LARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFN 216 (296)
T ss_pred CCCEEEEEC--CcH-H--HHH-HHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEE
Confidence 358899999 598 4 766 9999999999883222221 245677789999986
No 61
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=34.43 E-value=75 Score=32.40 Aligned_cols=51 Identities=27% Similarity=0.408 Sum_probs=38.6
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCC-CceeeC-----------CCCC------HHHHHHhccCCEEEEc
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRG-TQVIDL-----------TAVS------QELAYLASDADLVILE 267 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g-~~VidL-----------~~~S------~e~~~~~~~ADLIIsK 267 (316)
..+++|++| +|| .+.| .+++|.+.| ..|+-. .+++ .|+...+.++|+|||=
T Consensus 177 ~~~~vlvIG--AGe---m~~l-va~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvViss 245 (414)
T COG0373 177 KDKKVLVIG--AGE---MGEL-VAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISS 245 (414)
T ss_pred ccCeEEEEc--ccH---HHHH-HHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEe
Confidence 578899998 899 5889 999999999 455222 2233 5677788899999984
No 62
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=34.30 E-value=24 Score=36.22 Aligned_cols=55 Identities=36% Similarity=0.531 Sum_probs=36.0
Q ss_pred eEEEEecCCCch-hhhchHHHHHHHHhCCCce-------------------------eeCCCCCHH-----HHHHhccCC
Q 021170 214 KAVIFVDNSGAD-IILGILPFARELLRRGTQV-------------------------IDLTAVSQE-----LAYLASDAD 262 (316)
Q Consensus 214 ~vl~~~DNaGEd-IVfD~LPLi~eL~~~g~~V-------------------------idL~~~S~e-----~~~~~~~AD 262 (316)
+++|=+..||-= ...- +=+++.|.++|.+| +|+=-++++ |.+...++|
T Consensus 2 ~vvIAg~~SG~GKTTvT-~glm~aL~~rg~~VqpfKvGPDYIDP~~H~~atG~~srNLD~~mm~~~~v~~~f~~~~~~ad 80 (451)
T COG1797 2 AVVIAGTSSGSGKTTVT-LGLMRALRRRGLKVQPFKVGPDYIDPGYHTAATGRPSRNLDSWMMGEEGVRALFARAAADAD 80 (451)
T ss_pred ceEEecCCCCCcHHHHH-HHHHHHHHhcCCcccccccCCCccCchhhhHhhCCccCCCchhhcCHHHHHHHHHHhcCCCC
Confidence 456666665530 2222 33889999999888 444444544 555667899
Q ss_pred EEEEcCC
Q 021170 263 LVILEGM 269 (316)
Q Consensus 263 LIIsKGm 269 (316)
+.|+||+
T Consensus 81 i~vIEGV 87 (451)
T COG1797 81 IAVIEGV 87 (451)
T ss_pred EEEEeec
Confidence 9999995
No 63
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.18 E-value=56 Score=31.37 Aligned_cols=51 Identities=35% Similarity=0.389 Sum_probs=40.7
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL 266 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs 266 (316)
..+++++++ +|. + .+ -|++-.|+++|..|+-..+-++.+.+.+.+||+||.
T Consensus 158 ~Gk~vvViG--~gg-~-vG-kpia~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 158 AGKHAVVVG--RSA-I-LG-KPMAMMLLNANATVTICHSRTQNLPELVKQADIIVG 208 (283)
T ss_pred CCCEEEEEC--CcH-H-HH-HHHHHHHHhCCCEEEEEeCCchhHHHHhccCCEEEE
Confidence 567888885 565 4 36 459999999999996666778889999999998886
No 64
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=32.47 E-value=64 Score=31.96 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=35.5
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCC-ceee---------CCCCCHHHHHHhccCCEEEE
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGT-QVID---------LTAVSQELAYLASDADLVIL 266 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~-~Vid---------L~~~S~e~~~~~~~ADLIIs 266 (316)
..++++++| +|| .+.+ .++.|.++|. +|+- ++....+.....+++|+||+
T Consensus 173 ~~k~vLvIG--aGe---m~~l-~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 173 KKASLLFIG--YSE---INRK-VAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFF 232 (338)
T ss_pred cCCEEEEEc--ccH---HHHH-HHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEE
Confidence 468899998 599 5899 9999999984 4522 22222233345678999998
No 65
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=32.14 E-value=72 Score=30.58 Aligned_cols=27 Identities=33% Similarity=0.251 Sum_probs=23.3
Q ss_pred CCeEEEEecCCCchhhhchHHHHHHHHhCCCce
Q 021170 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQV 244 (316)
Q Consensus 212 ~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V 244 (316)
..+|+|++ .|. .|.. |++.|++.|..|
T Consensus 3 ~~~v~IvG--~Gl---iG~s-~a~~l~~~g~~v 29 (279)
T COG0287 3 SMKVGIVG--LGL---MGGS-LARALKEAGLVV 29 (279)
T ss_pred CcEEEEEC--Cch---HHHH-HHHHHHHcCCeE
Confidence 35788888 999 5999 999999999887
No 66
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.96 E-value=46 Score=32.22 Aligned_cols=56 Identities=25% Similarity=0.348 Sum_probs=43.4
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhC----CCceeeCCCCCHHHHHHhccCCEEEE-cCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRR----GTQVIDLTAVSQELAYLASDADLVIL-EGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~----g~~VidL~~~S~e~~~~~~~ADLIIs-KGmGn 271 (316)
..|++++++ -+. + .| .|++-.|+++ |..|+-...-++.+.+...+||+||+ -|..+
T Consensus 152 ~Gk~vvViG--rS~-i-VG-kPla~lL~~~~~~~~AtVtvchs~T~~l~~~~~~ADIvV~AvG~p~ 212 (287)
T PRK14181 152 HGRHVAIVG--RSN-I-VG-KPLAALLMQKHPDTNATVTLLHSQSENLTEILKTADIIIAAIGVPL 212 (287)
T ss_pred CCCEEEEEC--CCc-c-ch-HHHHHHHHhCcCCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcC
Confidence 468888875 344 4 57 5699999998 78887777777889999999998875 45554
No 67
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=31.91 E-value=68 Score=31.32 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=30.9
Q ss_pred CchhhhchHHHHHHHHhCCCce----eeC--CCCCHHHHHHhccCCEEEEcCCCC
Q 021170 223 GADIILGILPFARELLRRGTQV----IDL--TAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 223 GEdIVfD~LPLi~eL~~~g~~V----idL--~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
|+ +|.+.- .+.... .+.+| ++- -..+++..+++.+||+||. |+||
T Consensus 135 G~-~v~Ge~-~i~~~~-~~~~I~~v~l~~~~~~~~~~a~~AI~~AD~Iv~-gPGS 185 (308)
T cd07187 135 GT-IVRGES-RISHLE-LGSPIKRVFLEPPDPKANPEALEAIEEADLIVY-GPGS 185 (308)
T ss_pred CC-EEEEEE-EeecCC-CCCCceEEEEECCCCCCCHHHHHHHHhCCEEEE-CCCc
Confidence 66 666666 443210 14455 333 5899999999999998665 9999
No 68
>COG2952 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.89 E-value=3.8e+02 Score=24.03 Aligned_cols=150 Identities=15% Similarity=0.220 Sum_probs=91.0
Q ss_pred HHHHhhhhHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHHHHcCCcchHHHHHH
Q 021170 46 LDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKD 125 (316)
Q Consensus 46 l~c~~~~i~~~~~~a~~~~~~~~~~~ra~~~~~~~~~~l~~l~~~p~~~~~~~~~~~~~~~~e~~~~~~G~~Dpy~~~K~ 125 (316)
...|..||..+.+.+...... ..+|+....+.=.+.+..+..+ +. +. .+-+.+.+..++++.=- -..
T Consensus 31 ~e~lK~~II~~lek~~~~E~~--LdE~aKelLeen~de~E~m~iD---~r---~~--Fw~VKrKLA~E~N~~lD---~ee 97 (183)
T COG2952 31 RELLKELIIGILEKSVKKENA--LDEQAKELLEENTDEIEFMRMD---ER---QL--FWMVKRKLAQEENFHLD---WEE 97 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHHhhh---HH---HH--HHHHHHHHhHHhCcccc---HHH
Confidence 356778888888887543322 3556655555555555444421 11 11 45667777777776532 456
Q ss_pred HHHHHHHHhHHHHHHHhhhhh--hhhhHHHHHHHHHHhhcccccchhhHHHhhccCCCcHHHHHhhhcCCCCCCCcHHHH
Q 021170 126 EENAKAISLFGDVVRLNDVIE--DEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETF 203 (316)
Q Consensus 126 ~~N~~Al~~~p~l~~~ld~i~--~~~d~l~~aik~aiaGN~iD~Ga~~~~~~~~~~~~~~~~~~~~~~~~p~~idd~~~~ 203 (316)
+.|.++-+.+..+.+. |.+. .++.+.+..|+-++-|-. . +.+.+++ .-
T Consensus 98 R~N~l~hqIl~~i~~~-d~i~f~vsen~irnlI~~si~~yL---------K--------IyE~iE~------------eV 147 (183)
T COG2952 98 RCNDLSHQILNKILDE-DLIMFSVSENLIRNLIYKSIDTYL---------K--------IYESIEN------------EV 147 (183)
T ss_pred HHHHHHHHHHHHHhhc-chheeecChHHHHHHHHHHHHHHH---------H--------HHHHHHH------------HH
Confidence 8899999888877664 3332 334556666655554311 1 2222222 23
Q ss_pred HHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhCCC
Q 021170 204 KVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGT 242 (316)
Q Consensus 204 ~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~ 242 (316)
.+++ +.+++=++-|-.--+ ++|-+| +=++|+++|.
T Consensus 148 ~ekI--k~Ykrkl~~GS~Ey~-liferl-YeeELrKkG~ 182 (183)
T COG2952 148 HEKI--KHYKRKLPVGSDEYE-LVFERL-YEEELRKKGF 182 (183)
T ss_pred HHHH--HhcccCCCCCChHHH-HHHHHH-HHHHHHHccC
Confidence 5566 667777777766667 999999 9999999884
No 69
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=31.40 E-value=39 Score=30.85 Aligned_cols=27 Identities=41% Similarity=0.598 Sum_probs=19.9
Q ss_pred eeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 245 IDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 245 idL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
++++++-+.+.++-.+.|.||.+|-|.
T Consensus 90 i~~~~i~~~~~~l~~~~D~VlVEGaGg 116 (231)
T PRK12374 90 INYTLMSNGLANLSEKVDHVVVEGTGG 116 (231)
T ss_pred CCHHHHHHHHHHHHhhCCEEEEECCCC
Confidence 445566666655557899999999995
No 70
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=30.45 E-value=72 Score=29.32 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=39.3
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeC----------------CCC-----CHHHHHHhccCCEEEEcCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDL----------------TAV-----SQELAYLASDADLVILEGM 269 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL----------------~~~-----S~e~~~~~~~ADLIIsKGm 269 (316)
..|++++++ -++ | .| .|++-.|+++|..|+-. ++. ++.+.+...+||+||+ ++
T Consensus 61 ~GK~vvVIG--rS~-i-VG-kPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIs-Av 134 (197)
T cd01079 61 YGKTITIIN--RSE-V-VG-RPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVIT-GV 134 (197)
T ss_pred CCCEEEEEC--CCc-c-ch-HHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEE-cc
Confidence 468888885 355 5 57 57999999999988322 233 3338889999998886 45
Q ss_pred CC
Q 021170 270 GR 271 (316)
Q Consensus 270 Gn 271 (316)
|.
T Consensus 135 G~ 136 (197)
T cd01079 135 PS 136 (197)
T ss_pred CC
Confidence 54
No 71
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=30.27 E-value=49 Score=32.93 Aligned_cols=56 Identities=30% Similarity=0.440 Sum_probs=42.5
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE-cCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL-EGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs-KGmGn 271 (316)
..|++++++- +. | .| .|++-.|+++|..|+-...-++.+.+...+||+||+ -|..+
T Consensus 213 ~GK~vvVIGR--S~-i-VG-kPla~LL~~~~ATVTicHs~T~nl~~~~~~ADIvIsAvGkp~ 269 (345)
T PLN02897 213 AGKNAVVIGR--SN-I-VG-LPMSLLLQRHDATVSTVHAFTKDPEQITRKADIVIAAAGIPN 269 (345)
T ss_pred CCCEEEEECC--Cc-c-cc-HHHHHHHHHCCCEEEEEcCCCCCHHHHHhhCCEEEEccCCcC
Confidence 4788888753 34 4 57 569999999999996666666778999999998876 45544
No 72
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=29.83 E-value=2.8e+02 Score=25.99 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=46.2
Q ss_pred HHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhCCCc-e--eeCCC----CCHHHHHHhccCCEEEEcCCCC
Q 021170 201 ETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQ-V--IDLTA----VSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 201 ~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~-V--idL~~----~S~e~~~~~~~ADLIIsKGmGn 271 (316)
+.|.+.. +++..+|+|+.--+|+.--.... +.+.+.+.|.+ | ++++. -++++.+.+.+||.|..=| ||
T Consensus 18 ~~~~~la-g~~~~rI~~iptAS~~~~~~~~~-~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~G-Gn 92 (250)
T TIGR02069 18 REFVSRA-GGEDAIIVIITSASEEPREVGER-YITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTG-GD 92 (250)
T ss_pred HHHHHHh-CCCCceEEEEeCCCCChHHHHHH-HHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeC-CC
Confidence 3444443 44556899998777652222334 67778889984 4 66532 3578899999999999987 77
No 73
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=29.83 E-value=4.5e+02 Score=24.25 Aligned_cols=139 Identities=14% Similarity=0.103 Sum_probs=73.6
Q ss_pred CcchHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhHHHHHHHHHH-hhcccccchhhHHHhhccCCCcHHHHHhhhcCCC
Q 021170 116 FRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIF-AGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRP 194 (316)
Q Consensus 116 ~~Dpy~~~K~~~N~~Al~~~p~l~~~ld~i~~~~d~l~~aik~ai-aGN~iD~Ga~~~~~~~~~~~~~~~~~~~~~~~~p 194 (316)
.+|+...+...--+...+.+......++ .+.+..+++... +++++=||.....- . ...|..-+.++-..-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~t~~~~~-----~~~l~~~~~~i~~a~~I~i~G~G~s~~-~---A~~~~~~l~~~g~~~ 157 (278)
T PRK11557 87 GDDPLRLVGEKLIKENTAAMRATLDVNS-----EEKLHECVTMLRSARRIILTGIGASGL-V---AQNFAWKLMKIGINA 157 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHhcCCeEEEEecChhHH-H---HHHHHHHHhhCCCeE
Confidence 4555544433333333333333333322 256777776644 67777777644210 0 012333344332222
Q ss_pred CCCCcHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCC-CHHHHHHhccCCEEEEcC
Q 021170 195 WVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAV-SQELAYLASDADLVILEG 268 (316)
Q Consensus 195 ~~idd~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~-S~e~~~~~~~ADLIIsKG 268 (316)
...+|...+...+..-+.+-++++...+|+ .- ..+=.++..+++|.+||-+..- +..+.+ -||+++.-+
T Consensus 158 ~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~-~~-~~~~~~~~ak~~ga~iI~IT~~~~s~la~---~ad~~l~~~ 227 (278)
T PRK11557 158 VAERDMHALLATVQALSPDDLLLAISYSGE-RR-ELNLAADEALRVGAKVLAITGFTPNALQQ---RASHCLYTI 227 (278)
T ss_pred EEcCChHHHHHHHHhCCCCCEEEEEcCCCC-CH-HHHHHHHHHHHcCCCEEEEcCCCCCchHH---hCCEEEEeC
Confidence 344566555544322345668999999998 32 2333678889999999665553 233333 488888643
No 74
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=29.71 E-value=63 Score=26.96 Aligned_cols=42 Identities=31% Similarity=0.529 Sum_probs=31.0
Q ss_pred cCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 220 DNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 220 DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
=|+|- ..+-.. +++.|.++|.+|--++-+.. +|+||.+|-|.
T Consensus 8 ~~~Gk-t~~~~~-l~~~l~~~~~~v~~~kp~~~--------~d~vliEGaGg 49 (134)
T cd03109 8 TDIGK-TVATAI-LARALKEKGYRVAPLKPVQT--------YDFVLVEGAGG 49 (134)
T ss_pred CCcCH-HHHHHH-HHHHHHHCCCeEEEEecCCC--------CCEEEEECCCc
Confidence 34777 666666 89999999999933322222 79999999998
No 75
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=29.58 E-value=32 Score=27.11 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=18.8
Q ss_pred CCCHHHHHHhCCCCCCeEEEec
Q 021170 291 VKHPEVAQFLGGRLYDCVFKYN 312 (316)
Q Consensus 291 vKC~~vA~~lG~~~gd~V~~~~ 312 (316)
-+.+++|+.+|.+.||+|=.-.
T Consensus 41 ~~~DPv~r~~g~k~GdVvkI~R 62 (79)
T PRK09570 41 KASDPVVKAIGAKPGDVIKIVR 62 (79)
T ss_pred eccChhhhhcCCCCCCEEEEEE
Confidence 3789999999999999986644
No 76
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=29.42 E-value=1.5e+02 Score=29.37 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=45.5
Q ss_pred CCCCcHHHHHHHhcccCCCeEEEEecCCCchh-hhchHHHHHHHHhCCCceeeCCCCC-----H---HHHHHh--ccCCE
Q 021170 195 WVIDDLETFKVKWSKKAWKKAVIFVDNSGADI-ILGILPFARELLRRGTQVIDLTAVS-----Q---ELAYLA--SDADL 263 (316)
Q Consensus 195 ~~idd~~~~~~~l~~~~~k~vl~~~DNaGEdI-VfD~LPLi~eL~~~g~~VidL~~~S-----~---e~~~~~--~~ADL 263 (316)
|..+-+.++-+.+...+.+++++++|..=... .+++ +.+.|.+.|..+.-++.+. + +..+.+ .++|.
T Consensus 14 ~G~g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~--v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~ 91 (383)
T PRK09860 14 IGADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGD--VQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDS 91 (383)
T ss_pred ECcCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHH--HHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCE
Confidence 34445555555443234689999999621111 2453 4666777887765444442 2 223333 47999
Q ss_pred EEEcCCCCCC
Q 021170 264 VILEGMGRGI 273 (316)
Q Consensus 264 IIsKGmGn~~ 273 (316)
||+=|=|-.+
T Consensus 92 IiaiGGGS~i 101 (383)
T PRK09860 92 VISLGGGSPH 101 (383)
T ss_pred EEEeCCchHH
Confidence 9999999854
No 77
>PF06967 Mo-nitro_C: Mo-dependent nitrogenase C-terminus; InterPro: IPR009717 This entry represents the C terminus (approximately 80 residues) of a number of bacterial Mo-dependent nitrogenases. These are involved in nitrogen fixation in cyanobacteria [].
Probab=29.12 E-value=3.3 Score=32.94 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=13.4
Q ss_pred CCCeEEEEecCCCchh
Q 021170 211 AWKKAVIFVDNSGADI 226 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdI 226 (316)
..|-+-|++|.|||||
T Consensus 65 RFRAL~YLaDecgEDi 80 (84)
T PF06967_consen 65 RFRALCYLADECGEDI 80 (84)
T ss_pred HHHHHHHHHHHhCcch
Confidence 3566889999999987
No 78
>PRK06444 prephenate dehydrogenase; Provisional
Probab=28.95 E-value=92 Score=28.30 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=26.3
Q ss_pred eEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE
Q 021170 214 KAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL 266 (316)
Q Consensus 214 ~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs 266 (316)
++.|++- .|. +|++ |.+.+.+.|..|. +.++|+||+
T Consensus 2 ~~~iiG~-~G~---mG~~-~~~~~~~~g~~v~------------~~~~DlVil 37 (197)
T PRK06444 2 MEIIIGK-NGR---LGRV-LCSILDDNGLGVY------------IKKADHAFL 37 (197)
T ss_pred EEEEEec-CCc---HHHH-HHHHHHhCCCEEE------------ECCCCEEEE
Confidence 4666773 466 6999 9999999998884 356777765
No 79
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=28.91 E-value=56 Score=32.77 Aligned_cols=56 Identities=25% Similarity=0.326 Sum_probs=42.7
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE-cCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL-EGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs-KGmGn 271 (316)
..|++++++- +. | .| -|++-.|+++|..|+-...-++.+.+...+||+||+ -|..+
T Consensus 230 ~GK~vvVIGR--S~-i-VG-kPLa~LL~~~~ATVTicHs~T~nl~~~~r~ADIVIsAvGkp~ 286 (364)
T PLN02616 230 KGKRAVVIGR--SN-I-VG-MPAALLLQREDATVSIVHSRTKNPEEITREADIIISAVGQPN 286 (364)
T ss_pred CCCEEEEECC--Cc-c-cc-HHHHHHHHHCCCeEEEeCCCCCCHHHHHhhCCEEEEcCCCcC
Confidence 4688888753 33 4 57 469999999999996666667889999999998775 44444
No 80
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=28.89 E-value=77 Score=30.24 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=11.9
Q ss_pred ccCCEEEEcCCCC
Q 021170 259 SDADLVILEGMGR 271 (316)
Q Consensus 259 ~~ADLIIsKGmGn 271 (316)
.++|+||.+|..+
T Consensus 86 ~~~D~vlVEG~k~ 98 (274)
T PRK14493 86 PGMDYAVVEGFKD 98 (274)
T ss_pred cCCCEEEEECCCC
Confidence 4789999999999
No 81
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.12 E-value=66 Score=31.16 Aligned_cols=55 Identities=31% Similarity=0.371 Sum_probs=42.1
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHh----CCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLR----RGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~----~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
..|++++++ -+. + .| .|++-.|++ +|..|+-...-++.+.+...+||+||+ ++|.
T Consensus 156 ~Gk~vvViG--rS~-i-VG-~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~~~~~ADIVI~-AvG~ 214 (286)
T PRK14184 156 AGKKAVVVG--RSN-I-VG-KPLALMLGAPGKFANATVTVCHSRTPDLAEECREADFLFV-AIGR 214 (286)
T ss_pred CCCEEEEEC--CCc-c-ch-HHHHHHHhCCcccCCCEEEEEeCCchhHHHHHHhCCEEEE-ecCC
Confidence 467888885 344 4 57 569999998 888886666667889999999999887 3454
No 82
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=28.10 E-value=1.2e+02 Score=31.42 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=19.4
Q ss_pred EEEEe--cCCCchhhhchHHHHHHHHhCCCce
Q 021170 215 AVIFV--DNSGADIILGILPFARELLRRGTQV 244 (316)
Q Consensus 215 vl~~~--DNaGEdIVfD~LPLi~eL~~~g~~V 244 (316)
|+=|+ -|||- .-|-.= ||.+|.++|.+|
T Consensus 3 Vi~IvG~sgSGK-TTLiek-LI~~L~~rG~rV 32 (452)
T PRK14495 3 VYGIIGWKDAGK-TGLVER-LVAAIAARGFSV 32 (452)
T ss_pred EEEEEecCCCCH-HHHHHH-HHHHHHhCCCeE
Confidence 44444 59999 444434 688899999888
No 83
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=28.02 E-value=73 Score=31.14 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=32.5
Q ss_pred EEEEecCCCchhhhchHHHHHHHHhCCCce----eeC---CCCCHHHHHHhccCCEEEEcCCCC
Q 021170 215 AVIFVDNSGADIILGILPFARELLRRGTQV----IDL---TAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 215 vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V----idL---~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
+..-.+| |+ +|-+-- .+- +.+.+| ++- -..+++..+++.+||+||. |+||
T Consensus 128 l~a~~~d-G~-~v~gq~-~i~---~~~~~I~~v~l~~~~~~~~~~~~l~AI~~ADlIvl-gPGS 184 (309)
T cd07044 128 LHAEXED-GT-IVHGES-FIP---KGEKKIDRVFLTPVDEASPSREVLEAIEKADNIVI-GPGS 184 (309)
T ss_pred EEEEECC-Cc-eEeeee-eee---cCCCCceEEEEcCCCCCCCCHHHHHHHHhCCEEEE-CCCc
Confidence 3444455 76 444444 332 344455 322 4788999999999998877 9999
No 84
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=27.63 E-value=37 Score=26.44 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=16.5
Q ss_pred CCCHHHHHHhCCCCCCeEEEec
Q 021170 291 VKHPEVAQFLGGRLYDCVFKYN 312 (316)
Q Consensus 291 vKC~~vA~~lG~~~gd~V~~~~ 312 (316)
-+.+++|+.+|.+.||+|=.-.
T Consensus 38 ~~~DPv~r~~g~k~GdVvkI~R 59 (74)
T PF01191_consen 38 LSSDPVARYLGAKPGDVVKIIR 59 (74)
T ss_dssp ETTSHHHHHTT--TTSEEEEEE
T ss_pred cccChhhhhcCCCCCCEEEEEe
Confidence 3789999999999999986543
No 85
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.07 E-value=64 Score=31.22 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=41.6
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHh--CCCceeeCCCCCHHHHHHhccCCEEEE-cCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLR--RGTQVIDLTAVSQELAYLASDADLVIL-EGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~--~g~~VidL~~~S~e~~~~~~~ADLIIs-KGmGn 271 (316)
..+++++++ .+. + .| -|++-.|.+ +|..|+-...-++.+.+...+||+||+ -|-.+
T Consensus 157 ~Gk~vvViG--rS~-~-VG-kPla~lL~~~~~~atVtvchs~T~~l~~~~k~ADIvV~AvGkp~ 215 (284)
T PRK14193 157 AGAHVVVIG--RGV-T-VG-RPIGLLLTRRSENATVTLCHTGTRDLAAHTRRADIIVAAAGVAH 215 (284)
T ss_pred CCCEEEEEC--CCC-c-ch-HHHHHHHhhccCCCEEEEeCCCCCCHHHHHHhCCEEEEecCCcC
Confidence 467888875 344 3 57 469999998 788886666667789999999998876 45444
No 86
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=26.85 E-value=78 Score=27.95 Aligned_cols=55 Identities=33% Similarity=0.388 Sum_probs=37.0
Q ss_pred eEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCC-----------HHHHHHhc--cCCEEEE-cCCCC
Q 021170 214 KAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVS-----------QELAYLAS--DADLVIL-EGMGR 271 (316)
Q Consensus 214 ~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S-----------~e~~~~~~--~ADLIIs-KGmGn 271 (316)
+|.+-+|++|. - +-.. .+.+|+..|.+|+|..-.+ ..+.+.+. ++|+.|. =|=|.
T Consensus 2 kIaig~Dhag~-~-lK~~-I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGTGi 70 (151)
T COG0698 2 KIAIGSDHAGY-E-LKEI-IIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGTGI 70 (151)
T ss_pred cEEEEcCcccH-H-HHHH-HHHHHHHCCCEEEeccccCCCCCcchHHHHHHHHHHHHcCCCCeeEEEecCCh
Confidence 57899999999 4 3456 7899999999997753332 22344443 5887554 45554
No 87
>PRK05858 hypothetical protein; Provisional
Probab=26.85 E-value=1.2e+02 Score=31.36 Aligned_cols=68 Identities=19% Similarity=0.120 Sum_probs=41.7
Q ss_pred CcHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHH-hCCCce---------ee---CCCCCHHHHHHhccCCEE
Q 021170 198 DDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELL-RRGTQV---------ID---LTAVSQELAYLASDADLV 264 (316)
Q Consensus 198 dd~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~-~~g~~V---------id---L~~~S~e~~~~~~~ADLI 264 (316)
++.+...+.| .++|+-++++.+-. ..-+-...++.|. +.|.+| ++ .-.+++...+++.+||+|
T Consensus 191 ~~i~~~~~~L--~~AkrPvil~G~g~--~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~~~~~~~~~l~~aD~v 266 (542)
T PRK05858 191 DALARAAGLL--AEAQRPVIMAGTDV--WWGHAEAALLRLAEELGIPVLMNGMGRGVVPADHPLAFSRARGKALGEADVV 266 (542)
T ss_pred HHHHHHHHHH--HhCCCcEEEECCCc--cccChHHHHHHHHHHhCCCEEEcCCcCCCCCCCCchhhhHHHHHHHHhCCEE
Confidence 3567777788 67888777766511 1111122444544 457777 11 223456677889999999
Q ss_pred EEcCC
Q 021170 265 ILEGM 269 (316)
Q Consensus 265 IsKGm 269 (316)
|.=|-
T Consensus 267 l~vG~ 271 (542)
T PRK05858 267 LVVGV 271 (542)
T ss_pred EEECC
Confidence 99984
No 88
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=26.71 E-value=39 Score=32.23 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 247 LTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 247 L~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
+.+-.+|+.+++++||||+.-|||=
T Consensus 51 ~a~~d~e~~~~i~~A~li~pDG~gv 75 (253)
T COG1922 51 LARKDPEFREILNQADLILPDGIGV 75 (253)
T ss_pred HhccCHHHHHHHhhcCEEccCchhH
Confidence 4577899999999999999999997
No 89
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.47 E-value=1.5e+02 Score=23.20 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=22.7
Q ss_pred HHHHHHhCCCceeeC------CCCCHHHHHHhccCCEEEE
Q 021170 233 FARELLRRGTQVIDL------TAVSQELAYLASDADLVIL 266 (316)
Q Consensus 233 Li~eL~~~g~~VidL------~~~S~e~~~~~~~ADLIIs 266 (316)
+-+.+.++|.+.+.. +.-...+...+.+||+||.
T Consensus 15 ~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv 54 (97)
T PF10087_consen 15 YKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIV 54 (97)
T ss_pred HHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEE
Confidence 345566788887555 2223348888999998875
No 90
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=25.38 E-value=63 Score=31.51 Aligned_cols=49 Identities=20% Similarity=0.430 Sum_probs=35.0
Q ss_pred EEEecCCCchhhhchHHHHHHHHhCC-Cce--e-----eCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 216 VIFVDNSGADIILGILPFARELLRRG-TQV--I-----DLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 216 l~~~DNaGEdIVfD~LPLi~eL~~~g-~~V--i-----dL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
...++| |+ ++|+.. +++ ++| .+| + +--+..+|..+++.+||+||+ |=||
T Consensus 136 ~a~~~d-G~-~~fqE~-~V~---~~~~~~i~~V~~~g~e~a~a~peal~AI~~AD~IIl-GPgs 192 (297)
T TIGR01819 136 YVETDE-GA-MHFQEF-WVR---RRGEPPVEDVDFRGAEKASIAPKVLEAIRKEDNILI-GPSN 192 (297)
T ss_pred EEEECC-CC-eEcceE-eee---ecCCCCeeEEEECCCCCCCCCHHHHHHHHhCCEEEE-CCCc
Confidence 333443 98 999988 774 455 455 1 235668999999999998776 8888
No 91
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=25.13 E-value=1.5e+02 Score=23.64 Aligned_cols=42 Identities=19% Similarity=0.118 Sum_probs=28.4
Q ss_pred CcHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhCCCce
Q 021170 198 DDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQV 244 (316)
Q Consensus 198 dd~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V 244 (316)
..-.++.++|+ ...+++++++.|++. .- .- +++.|.++|.+|
T Consensus 17 pga~e~l~~L~-~~g~~~~~lTNns~~-s~--~~-~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 17 PGAVEALDALR-ERGKPVVFLTNNSSR-SR--EE-YAKKLKKLGIPV 58 (101)
T ss_dssp TTHHHHHHHHH-HTTSEEEEEES-SSS--H--HH-HHHHHHHTTTT-
T ss_pred cCHHHHHHHHH-HcCCCEEEEeCCCCC-CH--HH-HHHHHHhcCcCC
Confidence 34455666664 457899999999998 42 23 788999999776
No 92
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.03 E-value=78 Score=30.83 Aligned_cols=56 Identities=23% Similarity=0.351 Sum_probs=43.1
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhC----CCceeeCCCCCHHHHHHhccCCEEEE-cCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRR----GTQVIDLTAVSQELAYLASDADLVIL-EGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~----g~~VidL~~~S~e~~~~~~~ADLIIs-KGmGn 271 (316)
..+++++++ -+. + .| -|++-.|.++ |..|+-...-++.+.+...+||+||+ -|..+
T Consensus 160 ~Gk~vvViG--rS~-i-VG-kPla~lL~~~~~~~~atVtv~hs~T~~l~~~~~~ADIvVsAvGkp~ 220 (297)
T PRK14168 160 SGAEVVVVG--RSN-I-VG-KPIANMMTQKGPGANATVTIVHTRSKNLARHCQRADILIVAAGVPN 220 (297)
T ss_pred CCCEEEEEC--CCC-c-cc-HHHHHHHHhcccCCCCEEEEecCCCcCHHHHHhhCCEEEEecCCcC
Confidence 468888875 344 4 57 5699999988 68886666667889999999999887 56666
No 93
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=24.58 E-value=2.1e+02 Score=25.85 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=30.0
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCce--eeCCCCCHHHHHHhc
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQV--IDLTAVSQELAYLAS 259 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V--idL~~~S~e~~~~~~ 259 (316)
..+++|++|- |+ + +.. .++.|++.|.+| ++ ...++++.+++.
T Consensus 9 ~~k~vLVIGg--G~-v--a~~-ka~~Ll~~ga~V~VIs-~~~~~~l~~l~~ 52 (202)
T PRK06718 9 SNKRVVIVGG--GK-V--AGR-RAITLLKYGAHIVVIS-PELTENLVKLVE 52 (202)
T ss_pred CCCEEEEECC--CH-H--HHH-HHHHHHHCCCeEEEEc-CCCCHHHHHHHh
Confidence 4688999984 88 5 566 789999999888 43 345566655543
No 94
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.35 E-value=77 Score=30.85 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=42.5
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhC----CCceeeCCCCCHHHHHHhccCCEEEE-cCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRR----GTQVIDLTAVSQELAYLASDADLVIL-EGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~----g~~VidL~~~S~e~~~~~~~ADLIIs-KGmGn 271 (316)
..|++++++ -+. + .| -|++-.|+++ +..|+-...-++.+.+...+||+||+ -|-.+
T Consensus 156 ~Gk~vvViG--rS~-i-VG-kPla~lL~~~~~~~~aTVtvchs~T~~l~~~~~~ADIvIsAvGkp~ 216 (297)
T PRK14167 156 EGADVVVVG--RSD-I-VG-KPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPE 216 (297)
T ss_pred CCCEEEEEC--CCc-c-cH-HHHHHHHhcCccCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcC
Confidence 568888885 344 4 57 4699999988 78886666667788999999998887 56666
No 95
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=24.16 E-value=1.6e+02 Score=30.66 Aligned_cols=66 Identities=20% Similarity=0.133 Sum_probs=42.1
Q ss_pred cHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHH-hCCCce---------ee------CC----CCCHHHHHHh
Q 021170 199 DLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELL-RRGTQV---------ID------LT----AVSQELAYLA 258 (316)
Q Consensus 199 d~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~-~~g~~V---------id------L~----~~S~e~~~~~ 258 (316)
..++..+.| ..+++-++++++-.- .-+--+.+++|. +.|.+| ++ +. .-++...+++
T Consensus 199 ~i~~~~~~L--~~A~rPvil~G~g~~--~~~a~~~l~~lae~l~~pv~tt~~gkg~ip~~hpl~~G~~G~~~~~~~~~~~ 274 (566)
T PRK07282 199 QIKKILKQL--SKAKKPVILAGGGIN--YAEAATELNAFAERYQIPVVTTLLGQGTIATSHPLFLGMGGMHGSYAANIAM 274 (566)
T ss_pred HHHHHHHHH--HcCCCcEEEECCCcC--cccHHHHHHHHHHHhCCCEEeccccCCCCCCCChhhcCCCCCCCCHHHHHHH
Confidence 467777778 678988888886331 122223445554 357776 11 11 1256777899
Q ss_pred ccCCEEEEcC
Q 021170 259 SDADLVILEG 268 (316)
Q Consensus 259 ~~ADLIIsKG 268 (316)
++||+||+=|
T Consensus 275 ~~aD~vl~lG 284 (566)
T PRK07282 275 TEADFMINIG 284 (566)
T ss_pred HhCCEEEEEC
Confidence 9999999987
No 96
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.44 E-value=98 Score=30.07 Aligned_cols=55 Identities=22% Similarity=0.388 Sum_probs=41.9
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHh----CCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLR----RGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~----~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
..|++++++ -++ + .| -|++-.|.+ +|..|+-...-+..+.+.+.+||+||+ ++|.
T Consensus 158 ~Gk~vvViG--rS~-i-VG-~Pla~lL~~~~~~~~atVt~~hs~t~~l~~~~~~ADIvI~-Avg~ 216 (295)
T PRK14174 158 KGKHCVVVG--RSN-I-VG-KPMANLMLQKLKESNCTVTICHSATKDIPSYTRQADILIA-AIGK 216 (295)
T ss_pred CCCEEEEEC--CCC-c-ch-HHHHHHHHhccccCCCEEEEEeCCchhHHHHHHhCCEEEE-ecCc
Confidence 468888885 344 4 57 468888876 688887766777889999999999887 4555
No 97
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=23.23 E-value=3.4e+02 Score=25.34 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=38.1
Q ss_pred CCCeEEEEecCC--Cc-hhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 211 AWKKAVIFVDNS--GA-DIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNa--GE-dIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
+.++|+|+---+ ++ +-.++ - +-+.+.+.|.+|..++. +++..+.+.+||.|+.=| ||
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~-~-~~~af~~lG~~v~~l~~-~~d~~~~l~~ad~I~v~G-Gn 89 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTA-K-VAEALAPLGIEVTGIHR-VADPVAAIENAEAIFVGG-GN 89 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHH-H-HHHHHHHCCCEEEEecc-chhhHHHHhcCCEEEECC-cc
Confidence 467888887755 22 12223 2 45556778999866654 467789999999776655 88
No 98
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=23.20 E-value=41 Score=26.54 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=25.6
Q ss_pred cCCEEEEcCCCC-C-------CCccchhhcccchhhhccCCCHHHHHHhC-CCCCCeE
Q 021170 260 DADLVILEGMGR-G-------IETNLYAQFKCDSLKIGMVKHPEVAQFLG-GRLYDCV 308 (316)
Q Consensus 260 ~ADLIIsKGmGn-~-------~~~ni~~~f~cdllkL~~vKC~~vA~~lG-~~~gd~V 308 (316)
.|-.|++||+|- + .+.++.- ++++++|+.|- ++.|+.|
T Consensus 16 ~aP~VvAKG~g~~A~~I~~~A~e~~VPi-----------~~~~~LAr~L~~~~ig~~I 62 (82)
T TIGR00789 16 KAPKVVASGVGEVAERIIEIAKKHGIPI-----------VEDPDLVDVLLKLDLDDEI 62 (82)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHcCCCE-----------EeCHHHHHHHHhCCCCCcc
Confidence 588999999999 1 1234433 78999999663 4455543
No 99
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=23.18 E-value=2.9e+02 Score=27.57 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=42.7
Q ss_pred CcHHHHHHHhcccCCCeEEEEecC----CCchhhhchHHHHHHHHhCCCceeeCCCCCH----H-HHHH---h--ccCCE
Q 021170 198 DDLETFKVKWSKKAWKKAVIFVDN----SGADIILGILPFARELLRRGTQVIDLTAVSQ----E-LAYL---A--SDADL 263 (316)
Q Consensus 198 dd~~~~~~~l~~~~~k~vl~~~DN----aGEdIVfD~LPLi~eL~~~g~~VidL~~~S~----e-~~~~---~--~~ADL 263 (316)
+-++++-+.+...+.+++++++|. +|. +++ +.+.|.+.|.++..++.+.+ + ..+. + .++|.
T Consensus 35 g~~~~l~~~~~~~g~~~~lvv~~~~~~~~g~---~~~--v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~ 109 (395)
T PRK15454 35 GAVSSCGQQAQTRGLKHLFVMADSFLHQAGM---TAG--LTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDG 109 (395)
T ss_pred CHHHHHHHHHHhcCCCEEEEEcCcchhhCcc---HHH--HHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCE
Confidence 334444433321246899999985 344 443 36667778877744444432 2 3333 3 47999
Q ss_pred EEEcCCCCCC
Q 021170 264 VILEGMGRGI 273 (316)
Q Consensus 264 IIsKGmGn~~ 273 (316)
||+=|=|-.+
T Consensus 110 IiavGGGS~i 119 (395)
T PRK15454 110 VIAFGGGSVL 119 (395)
T ss_pred EEEeCChHHH
Confidence 9999999844
No 100
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=23.04 E-value=1.7e+02 Score=24.72 Aligned_cols=18 Identities=44% Similarity=0.648 Sum_probs=12.0
Q ss_pred HHHHHhccCCEEEEcCCCC
Q 021170 253 ELAYLASDADLVILEGMGR 271 (316)
Q Consensus 253 e~~~~~~~ADLIIsKGmGn 271 (316)
++...+. .|+|+.+|.-+
T Consensus 85 ~~~~~~~-~Dlvl~eG~k~ 102 (140)
T PF03205_consen 85 ELLSLLP-VDLVLVEGFKS 102 (140)
T ss_dssp HHHHHCC--SEEEEESSSS
T ss_pred HHHHhhC-CCEEEEecCCC
Confidence 4555555 88888888877
No 101
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=22.75 E-value=1.5e+02 Score=29.00 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=31.4
Q ss_pred CchhhhchHHHHHHHHhCCCce----eeC--CCCCHHHHHHhccCCEEEEcCCCC
Q 021170 223 GADIILGILPFARELLRRGTQV----IDL--TAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 223 GEdIVfD~LPLi~eL~~~g~~V----idL--~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
|+ +|.+-- .+. +++.+| ++- -...++..+++.+||+||. |+||
T Consensus 134 G~-~v~Ge~-~i~---~~~~~I~~v~l~~~~~~a~~~al~AI~~ADlIvl-gPGS 182 (310)
T TIGR01826 134 GR-EVRGES-NIP---KMGGKIDRVRLEPEDVPALREAVEAIREADLIIL-GPGS 182 (310)
T ss_pred CC-EEEEEE-hhh---cCCCCceEEEEeCCCCCCCHHHHHHHHhCCEEEE-CCCc
Confidence 77 777776 443 455556 332 4677999999999998776 9999
No 102
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.58 E-value=1.9e+02 Score=30.08 Aligned_cols=66 Identities=20% Similarity=0.189 Sum_probs=43.3
Q ss_pred cHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHh-CCCce---------ee------CC----CCCHHHHHHh
Q 021170 199 DLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLR-RGTQV---------ID------LT----AVSQELAYLA 258 (316)
Q Consensus 199 d~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~-~g~~V---------id------L~----~~S~e~~~~~ 258 (316)
..++..+.| ..+++.++++.+-.- . -+--+.+++|.+ .|.+| ++ +. .-+++..+++
T Consensus 195 ~i~~a~~~L--~~A~rPvi~~G~g~~-~-~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~~~G~~G~~~~~~~~~~l 270 (574)
T PRK07979 195 QIKRALQTL--VAAKKPVVYVGGGAI-N-AACHQQLKELVEKLNLPVVSSLMGLGAFPATHRQSLGMLGMHGTYEANMTM 270 (574)
T ss_pred HHHHHHHHH--HcCCCCEEEECCCcc-c-cchHHHHHHHHHHhCCCEEEccccCCCCCCCCcccccCCcCCCCHHHHHHH
Confidence 467777888 678888888776443 1 132334566653 57777 11 11 1356778899
Q ss_pred ccCCEEEEcC
Q 021170 259 SDADLVILEG 268 (316)
Q Consensus 259 ~~ADLIIsKG 268 (316)
.+||+||+=|
T Consensus 271 ~~aDlvl~vG 280 (574)
T PRK07979 271 HNADVIFAVG 280 (574)
T ss_pred HhCCEEEEeC
Confidence 9999999988
No 103
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=22.58 E-value=5.8e+02 Score=27.58 Aligned_cols=109 Identities=14% Similarity=0.171 Sum_probs=70.1
Q ss_pred cchHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhHHHHHHHHHHhhcccccchhhHHHhhccCCCcHHHHHhhhcCCCCC
Q 021170 117 RDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWV 196 (316)
Q Consensus 117 ~Dpy~~~K~~~N~~Al~~~p~l~~~ld~i~~~~d~l~~aik~aiaGN~iD~Ga~~~~~~~~~~~~~~~~~~~~~~~~p~~ 196 (316)
+.-++.+|+.--+..++.+..+.+. .++.+... ..--|.++=.|+.. ++.+.+.+.+++.-.=.
T Consensus 339 n~~l~~Irk~l~kkvl~~L~~La~~------~~e~y~~f--~~~fg~~LKeG~~e--------D~~n~e~l~~lLrf~St 402 (623)
T COG0326 339 NRILAAIRKALTKKVLSMLEKLAKD------DPEKYRKF--WKQFGLVLKEGLYE--------DFENKEKLLDLLRFRST 402 (623)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc------CHHHHHHH--HHHHHHHHHhhhhh--------hhhhHHHHHhhhEeccc
Confidence 5567777777777776666665443 12333332 33456666667665 45555666655442211
Q ss_pred CC------cHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhCCCce
Q 021170 197 ID------DLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQV 244 (316)
Q Consensus 197 id------d~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V 244 (316)
-+ .+++...++. ..-+.|-|++.++-. .+-. .|.++..+.+|.+|
T Consensus 403 ~~~~~~~~sl~eYv~rmk-e~q~~IyY~tges~~-~~~~-sP~lE~~k~kgieV 453 (623)
T COG0326 403 SDSGEKTVSLEEYVSRMK-EGQKQIYYITGESYQ-AAKG-SPHLELFKAKGIEV 453 (623)
T ss_pred CCCccCcccHHHHHHhcc-cccceeEEeccccHH-HHhc-CchHHHHHhcCcEE
Confidence 22 4566777773 357789999999888 6554 78999999999999
No 104
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=22.54 E-value=62 Score=27.44 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=23.9
Q ss_pred HHHHHHhCCCceee-------CCCCCHHHHHHhccCCEEEEcC
Q 021170 233 FARELLRRGTQVID-------LTAVSQELAYLASDADLVILEG 268 (316)
Q Consensus 233 Li~eL~~~g~~Vid-------L~~~S~e~~~~~~~ADLIIsKG 268 (316)
+.+.|.+.|.+|.. .+.+...+.++.+++||||.=|
T Consensus 32 l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttG 74 (144)
T TIGR00177 32 LAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTG 74 (144)
T ss_pred HHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECC
Confidence 44556778988843 3344445556667899998876
No 105
>KOG3218 consensus RNA polymerase, 25-kDa subunit (common to polymerases I, II and III) [Transcription]
Probab=22.41 E-value=46 Score=30.71 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=18.3
Q ss_pred CCCHHHHHHhCCCCCCeEEEe
Q 021170 291 VKHPEVAQFLGGRLYDCVFKY 311 (316)
Q Consensus 291 vKC~~vA~~lG~~~gd~V~~~ 311 (316)
-|+++||+.+|.+.|++|=.-
T Consensus 172 q~~DpvaRYyGLKrGqVVKI~ 192 (208)
T KOG3218|consen 172 QKKDPVARYYGLKRGQVVKII 192 (208)
T ss_pred eccChHHhhhccccCcEEEEE
Confidence 378999999999999998653
No 106
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=22.30 E-value=1.2e+02 Score=31.53 Aligned_cols=64 Identities=20% Similarity=0.165 Sum_probs=38.4
Q ss_pred CcHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHh-CCCce---------------eeCCCCCHHHHHHhccC
Q 021170 198 DDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLR-RGTQV---------------IDLTAVSQELAYLASDA 261 (316)
Q Consensus 198 dd~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~-~g~~V---------------idL~~~S~e~~~~~~~A 261 (316)
++++...+.| ..+++.++++-+-.- -.+-..-+++|.+ .|.+| +.+... ..+++++|
T Consensus 208 ~~~~~~~~~L--~~AkrPvi~~G~g~~--~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~---~~~~~~~a 280 (569)
T PRK08327 208 EDIARAAEML--AAAERPVIITWRAGR--TAEGFASLRRLAEELAIPVVEYAGEVVNYPSDHPLHLGPD---PRADLAEA 280 (569)
T ss_pred HHHHHHHHHH--HhCCCCEEEEecccC--CcccHHHHHHHHHHhCCCEEecCCCceeCCCCCccccccc---cchhhhhC
Confidence 4567777888 668887776655221 1222223455543 57777 112222 45677899
Q ss_pred CEEEEcC
Q 021170 262 DLVILEG 268 (316)
Q Consensus 262 DLIIsKG 268 (316)
||||+=|
T Consensus 281 Dlvl~lG 287 (569)
T PRK08327 281 DLVLVVD 287 (569)
T ss_pred CEEEEeC
Confidence 9999988
No 107
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=22.12 E-value=93 Score=30.20 Aligned_cols=56 Identities=27% Similarity=0.372 Sum_probs=43.5
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE-cCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL-EGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs-KGmGn 271 (316)
..+++++++ .|. | .|+ |+...|++.+..|+--..-++.+.+..++||+||+ -|-.+
T Consensus 155 ~Gk~~vVVG--rS~-i-VGk-Pla~lL~~~naTVtvcHs~T~~l~~~~k~ADIvv~AvG~p~ 211 (283)
T COG0190 155 RGKNVVVVG--RSN-I-VGK-PLALLLLNANATVTVCHSRTKDLASITKNADIVVVAVGKPH 211 (283)
T ss_pred CCCEEEEEC--CCC-c-CcH-HHHHHHHhCCCEEEEEcCCCCCHHHHhhhCCEEEEecCCcc
Confidence 567888874 566 6 476 49999999999996666667999999999997765 45444
No 108
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=21.98 E-value=46 Score=31.25 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.5
Q ss_pred CCCCHHHHHHhccCCEEEEcCCCC
Q 021170 248 TAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 248 ~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
.+-.+++++++++||+|+.-|||=
T Consensus 49 a~~d~~~~~~l~~ad~i~~DG~gv 72 (243)
T PRK03692 49 AEDDAELRELINAAEYKYADGISV 72 (243)
T ss_pred hCcCHHHHHHHHhCCEEecCCHHH
Confidence 356899999999999999999965
No 109
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.79 E-value=99 Score=30.07 Aligned_cols=56 Identities=25% Similarity=0.347 Sum_probs=42.0
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhC----CCceeeCCCCCHHHHHHhccCCEEEE-cCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRR----GTQVIDLTAVSQELAYLASDADLVIL-EGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~----g~~VidL~~~S~e~~~~~~~ADLIIs-KGmGn 271 (316)
..|++++++ .+. + .| -|++-.|+++ +..|+-...-++.+.+...+||+||+ -|..+
T Consensus 156 ~GK~vvViG--rS~-i-VG-kPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~ADIvIsAvGkp~ 216 (293)
T PRK14185 156 SGKKCVVLG--RSN-I-VG-KPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEADIIIAALGQPE 216 (293)
T ss_pred CCCEEEEEC--CCc-c-ch-HHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhhCCEEEEccCCcC
Confidence 468888874 444 4 57 5699999988 57886666667789999999998876 45544
No 110
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=20.67 E-value=39 Score=27.11 Aligned_cols=36 Identities=36% Similarity=0.468 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCce--eeCC---------------CCCHHHHHHhccCCEEEE
Q 021170 231 LPFARELLRRGTQV--IDLT---------------AVSQELAYLASDADLVIL 266 (316)
Q Consensus 231 LPLi~eL~~~g~~V--idL~---------------~~S~e~~~~~~~ADLIIs 266 (316)
+.++++|+++|.+| .|.- ...+.+.+.+.+||.||.
T Consensus 20 ~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl 72 (106)
T PF03720_consen 20 LELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVL 72 (106)
T ss_dssp HHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEE
T ss_pred HHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEE
Confidence 34789999999988 2210 112234667778998886
No 111
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=20.66 E-value=2.7e+02 Score=24.91 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=35.0
Q ss_pred EEEecCCCchhhhchHHHHHHHHhCCCce--eeCCCCCHHHHHHhccCC-EEEEcCCCC
Q 021170 216 VIFVDNSGADIILGILPFARELLRRGTQV--IDLTAVSQELAYLASDAD-LVILEGMGR 271 (316)
Q Consensus 216 l~~~DNaGEdIVfD~LPLi~eL~~~g~~V--idL~~~S~e~~~~~~~AD-LIIsKGmGn 271 (316)
+++.||=+. |-.. +++.|.++|.+| +..+..+.+-.... +.| +|||=|=|+
T Consensus 2 il~idn~ds---ft~n-l~~~l~~~g~~v~v~~~~~~~~~~~~~~-~~d~iIlsgGP~~ 55 (195)
T PRK07649 2 ILMIDNYDS---FTFN-LVQFLGELGQELVVKRNDEVTISDIENM-KPDFLMISPGPCS 55 (195)
T ss_pred EEEEeCCCc---cHHH-HHHHHHHCCCcEEEEeCCCCCHHHHhhC-CCCEEEECCCCCC
Confidence 688999999 7777 999999999888 44554554433222 345 566666666
No 112
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=20.66 E-value=1.6e+02 Score=29.54 Aligned_cols=51 Identities=33% Similarity=0.529 Sum_probs=35.7
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCC-CceeeCCC----------------CC-HHHHHHhccCCEEEEc
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRG-TQVIDLTA----------------VS-QELAYLASDADLVILE 267 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g-~~VidL~~----------------~S-~e~~~~~~~ADLIIsK 267 (316)
+.++++++| +|+ + +.+ .++.|...| .+|+-.++ ++ .++.+.+.++|+||.=
T Consensus 179 ~~~~VlViG--aG~-i--G~~-~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 179 KGKKALLIG--AGE-M--GEL-VAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISS 247 (417)
T ss_pred cCCEEEEEC--ChH-H--HHH-HHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEEC
Confidence 468899998 699 4 888 999999999 66622111 11 3455666789988874
No 113
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=20.51 E-value=3.3e+02 Score=26.81 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=18.9
Q ss_pred EEEEe-cCCCchhhhchHHHHHHHHhCCCce
Q 021170 215 AVIFV-DNSGADIILGILPFARELLRRGTQV 244 (316)
Q Consensus 215 vl~~~-DNaGEdIVfD~LPLi~eL~~~g~~V 244 (316)
+-+.+ =|+|- .-|-.= +++.|.++|.+|
T Consensus 208 ~~~~g~~~~GK-tt~~~~-l~~~l~~~g~~v 236 (366)
T PRK14489 208 LGVVGYSGTGK-TTLLEK-LIPELIARGYRI 236 (366)
T ss_pred EEEecCCCCCH-HHHHHH-HHHHHHHcCCEE
Confidence 44444 58888 545444 688888888877
No 114
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=20.15 E-value=2.7e+02 Score=28.68 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=40.0
Q ss_pred HHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHh-CCCce---------ee------C-----CCCCHHHHHHh
Q 021170 200 LETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLR-RGTQV---------ID------L-----TAVSQELAYLA 258 (316)
Q Consensus 200 ~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~-~g~~V---------id------L-----~~~S~e~~~~~ 258 (316)
.++..+.| .++|+-++++.. |. .-.+-..-+++|.+ .|.+| ++ + ..-++...+++
T Consensus 195 i~~a~~~L--~~AkrPvil~G~-g~-~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hpl~lG~~~g~~~~~~~~~~~ 270 (539)
T TIGR03393 195 RDAAENKL--AMAKRVSLLADF-LA-LRHGLKHALQKWVKEVPMPHATLLMGKGILDEQQAGFYGTYSGSASTGAVKEAI 270 (539)
T ss_pred HHHHHHHH--HhCCCCEEEeCh-hh-cccChHHHHHHHHHHhCCCEEECcccCccccCcCCCeEEEEeCCCCCHHHHHHH
Confidence 45556667 678888888764 33 22333334455543 46666 21 1 12345788899
Q ss_pred ccCCEEEEcC
Q 021170 259 SDADLVILEG 268 (316)
Q Consensus 259 ~~ADLIIsKG 268 (316)
.+||+||+=|
T Consensus 271 ~~aDlvl~lG 280 (539)
T TIGR03393 271 EGADAVICVG 280 (539)
T ss_pred hhCCEEEEEC
Confidence 9999999988
No 115
>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=20.06 E-value=1.7e+02 Score=24.60 Aligned_cols=38 Identities=26% Similarity=0.256 Sum_probs=30.7
Q ss_pred hchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE
Q 021170 228 LGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL 266 (316)
Q Consensus 228 fD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs 266 (316)
+|.. +++.|.+.|.+|+|......++...+.++|.||.
T Consensus 15 ~G~~-v~~~L~~~~v~vi~~g~~~~~ll~~i~~~d~vii 52 (140)
T cd06070 15 FGSC-LAEALEQCGAPVFDGGLDGFGLLSHLENYDIVIF 52 (140)
T ss_pred HHHH-HHHHHhhCCCEEEECCCcHHHHHHHHcCCCEEEE
Confidence 4556 7888877888889999989999999988886654
Done!