Query 021170
Match_columns 316
No_of_seqs 164 out of 303
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 13:47:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021170.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021170hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xfi_A Unknown protein; struct 100.0 6.5E-74 2.2E-78 558.1 28.6 314 2-315 2-366 (367)
2 2g8l_A 287AA long hypothetical 100.0 3.2E-47 1.1E-51 361.4 15.9 238 44-313 18-296 (299)
3 2ffj_A Conserved hypothetical 100.0 1.9E-45 6.4E-50 349.3 16.8 237 44-312 18-299 (300)
4 3pt1_A UPF0364 protein YMR027W 99.5 3.9E-14 1.3E-18 141.4 12.7 133 104-241 112-275 (471)
5 1edz_A 5,10-methylenetetrahydr 84.1 1.4 4.7E-05 41.8 5.8 51 211-266 176-251 (320)
6 2c2x_A Methylenetetrahydrofola 83.4 1 3.6E-05 41.9 4.5 51 211-266 157-209 (281)
7 1b0a_A Protein (fold bifunctio 77.5 2.1 7.3E-05 40.0 4.5 51 211-266 158-208 (288)
8 3l07_A Bifunctional protein fo 76.5 3 0.0001 38.9 5.2 51 211-266 160-210 (285)
9 4a26_A Putative C-1-tetrahydro 74.1 4.2 0.00014 38.1 5.6 51 211-266 164-216 (300)
10 1a4i_A Methylenetetrahydrofola 73.6 3.7 0.00013 38.6 5.0 55 211-271 164-218 (301)
11 3p2o_A Bifunctional protein fo 72.4 4 0.00014 38.0 4.9 51 211-266 159-209 (285)
12 3ngx_A Bifunctional protein fo 70.6 4.1 0.00014 37.8 4.5 51 211-266 149-199 (276)
13 3fwz_A Inner membrane protein 58.4 21 0.00073 28.2 6.2 27 212-244 7-33 (140)
14 4a5o_A Bifunctional protein fo 57.0 10 0.00035 35.3 4.5 52 211-267 160-211 (286)
15 2g1u_A Hypothetical protein TM 54.2 30 0.001 27.7 6.5 29 210-244 17-45 (155)
16 3llv_A Exopolyphosphatase-rela 52.6 27 0.00092 27.2 5.8 27 212-244 6-32 (141)
17 3brc_A Conserved protein of un 50.8 9.1 0.00031 32.4 2.7 65 196-268 22-101 (156)
18 3l4e_A Uncharacterized peptida 48.4 19 0.00064 31.4 4.6 57 212-271 27-89 (206)
19 1id1_A Putative potassium chan 47.3 42 0.0015 26.6 6.3 32 212-249 3-34 (153)
20 2hmt_A YUAA protein; RCK, KTN, 45.9 37 0.0013 25.9 5.6 27 212-244 6-32 (144)
21 3l4b_C TRKA K+ channel protien 42.8 34 0.0011 29.0 5.3 25 214-244 2-26 (218)
22 1lss_A TRK system potassium up 41.4 63 0.0022 24.4 6.3 30 212-247 4-33 (140)
23 1i1q_B Anthranilate synthase c 40.2 59 0.002 27.1 6.4 82 216-305 3-98 (192)
24 3c85_A Putative glutathione-re 37.4 48 0.0017 27.0 5.3 27 212-244 39-66 (183)
25 2gq0_A Chaperone protein HTPG; 33.5 1.7E+02 0.0058 27.3 8.8 76 159-245 148-230 (303)
26 3phh_A Shikimate dehydrogenase 33.3 63 0.0021 29.4 5.7 65 201-271 107-186 (269)
27 3ic5_A Putative saccharopine d 33.1 51 0.0018 24.1 4.4 49 212-266 5-75 (118)
28 3pry_A Heat shock protein HSP 32.3 2.9E+02 0.01 25.2 11.4 61 199-262 186-247 (268)
29 1eik_A RNA polymerase subunit 32.1 20 0.00067 27.1 1.7 21 291-311 40-60 (77)
30 1mkz_A Molybdenum cofactor bio 32.1 30 0.001 29.1 3.2 54 215-271 15-81 (172)
31 3l9w_A Glutathione-regulated p 31.8 70 0.0024 30.6 6.1 53 212-271 4-78 (413)
32 1hmj_A RPB5, protein (subunit 30.9 20 0.00069 27.1 1.6 22 291-312 38-59 (78)
33 3bzy_B ESCU; auto cleavage pro 30.1 10 0.00034 28.9 -0.2 38 260-308 16-63 (83)
34 3hjc_A Heat shock protein 83-1 29.6 1.7E+02 0.0058 28.7 8.4 43 199-244 202-244 (444)
35 3b1s_B Flagellar biosynthetic 35.4 12 0.00039 28.9 0.0 38 260-308 16-63 (87)
36 3ius_A Uncharacterized conserv 29.0 50 0.0017 28.6 4.2 31 213-249 6-36 (286)
37 3otg_A CALG1; calicheamicin, T 28.3 97 0.0033 28.0 6.2 33 211-244 19-51 (412)
38 1y5e_A Molybdenum cofactor bio 27.6 32 0.0011 28.7 2.6 52 215-268 18-80 (169)
39 1hdo_A Biliverdin IX beta redu 27.6 71 0.0024 25.7 4.7 49 213-266 4-73 (206)
40 3b0z_B Flagellar biosynthetic 33.1 13 0.00045 30.0 0.0 38 260-308 16-63 (114)
41 4b4u_A Bifunctional protein fo 27.0 39 0.0013 31.6 3.2 55 211-271 178-232 (303)
42 2raf_A Putative dinucleotide-b 27.0 53 0.0018 27.9 3.9 45 212-266 19-63 (209)
43 3gpi_A NAD-dependent epimerase 26.5 32 0.0011 29.9 2.4 26 213-244 4-29 (286)
44 3fxa_A SIS domain protein; str 25.8 2.8E+02 0.0094 22.8 9.0 114 150-271 32-147 (201)
45 3c3d_A 2-phospho-L-lactate tra 25.5 90 0.0031 29.2 5.4 44 223-271 143-193 (311)
46 3tsa_A SPNG, NDP-rhamnosyltran 25.4 45 0.0015 30.2 3.3 30 214-244 3-32 (391)
47 2vt1_B Surface presentation of 25.2 10 0.00035 29.5 -0.9 38 260-308 16-63 (93)
48 1hk7_A Heat shock protein HSP8 24.7 2.9E+02 0.0099 25.5 8.6 44 198-244 183-226 (288)
49 3oti_A CALG3; calicheamicin, T 24.3 51 0.0018 30.1 3.5 31 213-244 21-51 (398)
50 3dqp_A Oxidoreductase YLBE; al 24.3 57 0.0019 27.1 3.5 48 214-266 2-69 (219)
51 3d4o_A Dipicolinate synthase s 24.1 76 0.0026 28.4 4.5 50 211-266 154-219 (293)
52 2obn_A Hypothetical protein; s 23.1 1.4E+02 0.0047 28.3 6.2 60 210-271 150-236 (349)
53 1usu_A Heat shock protein HSP8 22.7 2.2E+02 0.0077 25.8 7.4 45 199-246 186-230 (260)
54 3h2s_A Putative NADH-flavin re 22.5 90 0.0031 25.7 4.4 44 215-266 3-68 (224)
55 1sbq_A H91_ORF164, 5,10-methen 21.6 36 0.0012 29.3 1.7 57 211-271 67-134 (189)
56 3dhn_A NAD-dependent epimerase 21.6 77 0.0026 26.2 3.8 49 213-266 5-73 (227)
57 3don_A Shikimate dehydrogenase 21.3 1.4E+02 0.0047 27.0 5.7 54 212-271 117-189 (277)
58 4ayb_H DNA-directed RNA polyme 20.8 45 0.0015 25.4 1.9 19 292-310 47-65 (84)
59 2vns_A Metalloreductase steap3 20.7 1E+02 0.0035 26.2 4.5 49 212-266 28-89 (215)
60 3ew7_A LMO0794 protein; Q8Y8U8 20.6 1E+02 0.0036 25.1 4.4 26 214-244 2-27 (221)
61 1fy2_A Aspartyl dipeptidase; s 20.5 2.1E+02 0.0071 24.8 6.5 64 201-271 22-89 (229)
62 3c01_E Surface presentation of 20.3 14 0.00047 29.1 -1.2 38 260-308 16-63 (98)
63 4fzr_A SSFS6; structural genom 20.1 70 0.0024 29.1 3.5 33 211-244 14-46 (398)
No 1
>1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A
Probab=100.00 E-value=6.5e-74 Score=558.08 Aligned_cols=314 Identities=84% Similarity=1.354 Sum_probs=278.3
Q ss_pred CCCCCCcCCCCCCCCCCCCCcCCcccCCCCCCCCCCCCcchhhHHHHHhhhhHHHHHHhcCCCCCccHHHHHHHHHHHHH
Q 021170 2 ESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYS 81 (316)
Q Consensus 2 ~~~~~~~~~pll~~~~~~~y~p~t~d~~~~~~~~r~~~~~~~~wl~c~~~~i~~~~~~a~~~~~~~~~~~ra~~~~~~~~ 81 (316)
+|++++++||||.||.+.+|.|||+||.+|+|..+.+++++.||++||.++|++++++|..++..+++.+|+++|+++|.
T Consensus 2 ~~~~~~~~~pll~~~~~~~y~p~t~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~a~~ra~~f~~~~~ 81 (367)
T 1xfi_A 2 ESDSEMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDITVPDAPARAEKFAERYA 81 (367)
T ss_dssp ----CCBCCTTSCSCCTTTCCSBCSCCCCTTSCTTSCCHHHHHHHHHHHTTHHHHHHHHHTCTTSTTHHHHHHHHHHHHH
T ss_pred CCccccccCcccCCccccCCCCCccCCCCCcccccccHHHHHHHHHHHHHhhHHHHHHhccCCCCccHHHHHHHHHHHHH
Confidence 67899999999999943499999999999999988989999999999999999999999877888999999999999999
Q ss_pred HHHHHhhcCCCCCCCchhhhHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 021170 82 EILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFA 161 (316)
Q Consensus 82 ~~l~~l~~~p~~~~~~~~~~~~~~~~e~~~~~~G~~Dpy~~~K~~~N~~Al~~~p~l~~~ld~i~~~~d~l~~aik~aia 161 (316)
++|++++++|.+||.|+.++.++++++++++.+|+.|||+++|+++|+.|+++++.+.+.+++++.++++|.++++++++
T Consensus 82 ~~l~~l~~~p~~~g~~~~~r~~~~~~~~il~~~g~~DPf~~~K~~~n~~al~~l~~l~~~l~~~~~~~~~l~~llr~al~ 161 (367)
T 1xfi_A 82 GILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFA 161 (367)
T ss_dssp HHHHHHHHCTTGGGCSCCHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCccccCCcchHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 99999999999999976678999999999999999999999999999999999999999988776667899999999999
Q ss_pred hcccccchhhHHHhhccCCCcHHHHHhhhcCCCCCCCcHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhCC
Q 021170 162 GNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRG 241 (316)
Q Consensus 162 GN~iD~Ga~~~~~~~~~~~~~~~~~~~~~~~~p~~idd~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g 241 (316)
||+||||+..++++++.++++++++++++.++||.+||++.|.++|.+.++++|+||+||||++||||+|||+++|+++|
T Consensus 162 GN~~Dlg~~~~~~~~~~~~~~~~~~~~~~~~~~~lvdd~~~l~~~L~~~~~k~Vl~v~DNAG~Eiv~D~L~La~~Ll~~g 241 (367)
T 1xfi_A 162 GNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRG 241 (367)
T ss_dssp HHHC---------------CCHHHHTTCSCCSSCSEECHHHHHHHHTTTCCCEEEEECCBTTHHHHHTHHHHHHHHHHTT
T ss_pred HhccccccccccccccccCCCHHHHHHHhhccCCCcCCHHHHHHHhcccCCCEEEEEecCCCchhhccHHHHHHHHHHcC
Confidence 99999999887666665568999999998999999999999999995445799999999999559999999999999999
Q ss_pred Cce---------------------------------------------------eeCCCCCHHHHHHhccCCEEEEcCCC
Q 021170 242 TQV---------------------------------------------------IDLTAVSQELAYLASDADLVILEGMG 270 (316)
Q Consensus 242 ~~V---------------------------------------------------idL~~~S~e~~~~~~~ADLIIsKGmG 270 (316)
++| +++.++|+||.+.+++|||||+||||
T Consensus 242 ~kVvl~vK~~P~vnDvT~~D~~~~L~~l~~~~~~L~~l~~g~l~vi~~G~~~~~~~l~~~s~el~~~l~~ADLVI~KG~g 321 (367)
T 1xfi_A 242 AQVVLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMG 321 (367)
T ss_dssp CEEEEEEBSSCCTTBCBHHHHHHHHHHHC--CCEETTEECTTEEEEECCCCSSSCCTTSBCHHHHHHHTTCSEEEEESHH
T ss_pred CEEEEEECCcCceeeCCHHHHHHHHHHHHhcchhhhhhccCcEEEEcCCCCCCCcChHHCCHHHHHHHccCCEEEEECCC
Confidence 988 55999999999999999999999999
Q ss_pred CCCCccchhhcccchhhhccCCCHHHHHHhCCCCCCeEEEeccCC
Q 021170 271 RGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVS 315 (316)
Q Consensus 271 n~~~~ni~~~f~cdllkL~~vKC~~vA~~lG~~~gd~V~~~~~~~ 315 (316)
|.+++|++..|.|++++|+|+||++||++||+++||+||++++++
T Consensus 322 Nyl~t~~~~~f~~~i~~L~~iKc~~vA~~lg~~~~~~V~~~~~~~ 366 (367)
T 1xfi_A 322 RGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEVQ 366 (367)
T ss_dssp HHTTBSTTCCCSSEEEEEEECCCHHHHHHHTCCTTCEEEEEECC-
T ss_pred CCCccchhhhcCcchhHHHhhCcHHHHHHhCCCcCCEEEEeCCCC
Confidence 999999999999999999999999999999999999999999875
No 2
>2g8l_A 287AA long hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1
Probab=100.00 E-value=3.2e-47 Score=361.43 Aligned_cols=238 Identities=17% Similarity=0.140 Sum_probs=197.5
Q ss_pred hHHHHHhhhhHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHHHHcCCcchHHHH
Q 021170 44 AWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKV 123 (316)
Q Consensus 44 ~wl~c~~~~i~~~~~~a~~~~~~~~~~~ra~~~~~~~~~~l~~l~~~p~~~~~~~~~~~~~~~~e~~~~~~G~~Dpy~~~ 123 (316)
+|++|+.+|+.+.++.+..+.. ...++.+.....+..- .....+||.+ +..+|+.+++.+|+.|||+++
T Consensus 18 ~C~~C~~~q~~~~~~~~~~d~~------~~~~i~~~~~~~l~~~---~~~~~~p~~~--~~~l~r~i~~~~g~~DPy~~~ 86 (299)
T 2g8l_A 18 ECLTCMANQCQRIVEMATQDMD------IRRRAMILAAKLLAKE---YNENAIPAIA--GSLIFLELYKFLGNDDPFIEY 86 (299)
T ss_dssp THHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHH---SSTTCCHHHH--HHHHHHHHHHHHTCSCTTHHH
T ss_pred hhHHHHHHHHHHHHHHhCCCHH------HHHHHHHHHHHHHHhh---cCCCCCcHHH--HHHHHHHHHHHcCCCCChHHH
Confidence 7999999999999999963322 2222233444444331 1335567765 889999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhhhhhhHHHHHHHHHHhhcccccchhhHHHhhccCCCcHHHHHhhhcCCCCCCCcHHHH
Q 021170 124 KDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETF 203 (316)
Q Consensus 124 K~~~N~~Al~~~p~l~~~ld~i~~~~d~l~~aik~aiaGN~iD~Ga~~~~~~~~~~~~~~~~~~~~~~~~p~~idd~~~~ 203 (316)
|+++|+.|++++|.+++.+ +++|.+++++|++||+||||+..+ ++++++.+++.+++||.+||++.|
T Consensus 87 K~~~n~~al~~~~~~~~~l------~d~l~~~l~~sl~GN~~D~g~~~~-------~~d~~~~~~~~~~~~~~~dd~~~l 153 (299)
T 2g8l_A 87 KLKSEEMARKVADIIKRKL------KLDFELAVKLAIIGNVIDFSVGFS-------PEDLEEEVEKMLKDKLYIDDSKEL 153 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHCCTTSCSC-------HHHHHHHHHHHHTSCCSEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhccccC-------CCCHHHHHHHHhhcCCCcccHHHH
Confidence 9999999999999988774 458999999999999999997542 356788888889999999999999
Q ss_pred HHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHh-CCCce--------------------------------------
Q 021170 204 KVKWSKKAWKKAVIFVDNSGADIILGILPFARELLR-RGTQV-------------------------------------- 244 (316)
Q Consensus 204 ~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~-~g~~V-------------------------------------- 244 (316)
.+++ +++++|+||+||||| +|||.+ |+++|++ +|.+|
T Consensus 154 ~~~l--~~~~~v~~v~DNaGE-iv~Dl~-l~~~Ll~~~g~~V~~~vK~~P~vnDvT~~D~~~~~~~~~~~vi~~G~~~~g 229 (299)
T 2g8l_A 154 FEEV--KRAENILYITDNVGE-HYFDAI-LIEKIREISNAEVYIAGKEGPIINDATVEDLKRAGLEKLGKVISTGTRIVG 229 (299)
T ss_dssp HHHH--HHCSEEEEECCBTTH-HHHHHH-HHHHHHHHCCCEEEEEEBSSCCTTBCBHHHHHHTTGGGTSEEEECSSSSSS
T ss_pred HHHh--ccCCEEEEEecCCcc-HHHhHH-HHHHHHHhcCCeEEEEECCcCceeeCCHHHHHHcCcchhhhhhcCCCCCCC
Confidence 9999 668999999999999 999966 9999999 99888
Q ss_pred eeCCCCCHHHHHHhccCCEEEEcCCCC--CCCccchhhcccchhhhccCCCHHHHHHhCCCCCCeEEEecc
Q 021170 245 IDLTAVSQELAYLASDADLVILEGMGR--GIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNE 313 (316)
Q Consensus 245 idL~~~S~e~~~~~~~ADLIIsKGmGn--~~~~ni~~~f~cdllkL~~vKC~~vA~~lG~~~gd~V~~~~~ 313 (316)
++++++|+||.+++++|||||+||||| .+-.. -.+++++|+++||+|||+++|++.|++||+++.
T Consensus 230 ~~l~~~s~el~~~~~~adLVI~KG~~Nye~L~~d----~~~~i~~L~~~Kc~~va~~lG~~~g~~V~~~~~ 296 (299)
T 2g8l_A 230 VPLKLVSREFMEAFNKADVIIAKGQGNFETLSEI----NDSRIFFLLKAKCPAVARELKVPKGALVCMRNK 296 (299)
T ss_dssp CCTTTSCHHHHHHHHHCSEEEEEHHHHHHHHTTS----CCTTEEEEEECCSHHHHHHHTSCTTCEEEEECC
T ss_pred CChHhCCHHHHHHHhcCCEEEEeCCchHhhhhcC----CCCCeehhhhcCCHHHHHHhCCCCCCEEEEecc
Confidence 679999999999999999999999999 21100 123456666699999999999999999999874
No 3
>2ffj_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1
Probab=100.00 E-value=1.9e-45 Score=349.34 Aligned_cols=237 Identities=21% Similarity=0.220 Sum_probs=189.3
Q ss_pred hHHHHHhhhhHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHHHHcCCcchHHHH
Q 021170 44 AWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKV 123 (316)
Q Consensus 44 ~wl~c~~~~i~~~~~~a~~~~~~~~~~~ra~~~~~~~~~~l~~l~~~p~~~~~~~~~~~~~~~~e~~~~~~G~~Dpy~~~ 123 (316)
+|++|+.+|+.+.++.+..++. ...++.+.....+.. ......+||.+ .+.+|+.+++.+|+.|||+++
T Consensus 18 ~C~~C~~~q~~~~~~~~~~d~~------~~~~i~~~~~~~l~~---~~~~~~~p~~~--~~~lyr~i~~~~g~~Dpf~~~ 86 (300)
T 2ffj_A 18 LCPSCLLGRVYYEAKLVTDDED------LISQCVDESLKILAE---NYSSRPINAHL--ATRIHRRVYEILGVEDPYAEV 86 (300)
T ss_dssp --CHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHH---C-----CCHHH--HHHHHHHHHHHHTCSCTTHHH
T ss_pred chHHHHHHHHHHHHHHhCCCHH------HHHHHHHHHHHHHHh---hcCCCCCcHHH--HHHHHHHHHHHcCCCCchHHH
Confidence 6999999999999999864322 222223334444433 12335566755 899999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhhhhhhHHHHHHHHHHhhcccccchhhHHHhhccCCCcHHHHHhhhcCCCCCCCcHHHH
Q 021170 124 KDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETF 203 (316)
Q Consensus 124 K~~~N~~Al~~~p~l~~~ld~i~~~~d~l~~aik~aiaGN~iD~Ga~~~~~~~~~~~~~~~~~~~~~~~~p~~idd~~~~ 203 (316)
|+++|+.|++++|.+++.+++ ++++|..++++|++||+||||+..+. .+++++++.+++.+++||.+||++.|
T Consensus 87 K~~~n~~a~~~l~~~~~~l~~---~~~~l~~~l~~sl~GN~~D~g~~~~~----~~~~d~~~~~~~~~~~~~~~dd~~~~ 159 (300)
T 2ffj_A 87 KARANEVARQVLPLAKEIVEG---SDDPFKTAVIVSIVGNNFDYGVQGHK----VVEEEFRDFLKRKVQEGLKINDTERI 159 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---SSSHHHHHHHHHHHGGGCCC----------CHHHHHHHHHHHHHHHCCSEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHhhHhhhccccccc----ccCCCHHHHHHHhhccCcCcCCHHHH
Confidence 999999999999998888654 57899999999999999999975421 01256778888888999999999999
Q ss_pred HHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhCCCce---------------------------------------
Q 021170 204 KVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQV--------------------------------------- 244 (316)
Q Consensus 204 ~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V--------------------------------------- 244 (316)
.+++ + ++|+||+||||| +|||++ |+++|+++|.+|
T Consensus 160 ~~~l--~--~~v~~v~DNaGE-iv~Dll-l~~~Ll~~g~~V~~~vK~~P~vnDvT~~D~~~~~l~~~~~vi~~~G~~~~~ 233 (300)
T 2ffj_A 160 KELS--S--GKVVYLTDNAGE-IFFDTL-LMKEIKRRCEKLTAVVRGRPIISDATIEDARLARVDKIADELLTNGKGAIG 233 (300)
T ss_dssp HHHT--T--SEEEEECCBTTH-HHHHHH-HHHHHHTTCSEEEEEEBSSCCTTBCBHHHHHHTTHHHHSSEEEECSSCCSS
T ss_pred HHHh--c--CCEEEEecCCcc-HHHHHH-HHHHHHHcCCeEEEEECCcCceecCCHHHHHHhhhhHHHhhhcCCCCCCCC
Confidence 9998 4 899999999997 999999 999999999888
Q ss_pred eeCCCCCHHHHHHhccCCEEEEcCCCC--CC----CccchhhcccchhhhccCCCHHHHHHhCCCCCCeEEEec
Q 021170 245 IDLTAVSQELAYLASDADLVILEGMGR--GI----ETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYN 312 (316)
Q Consensus 245 idL~~~S~e~~~~~~~ADLIIsKGmGn--~~----~~ni~~~f~cdllkL~~vKC~~vA~~lG~~~gd~V~~~~ 312 (316)
++++++|+||.+.+++|||||+||||| .+ .+|+++ +++ +||+|||+++|++.|++||++-
T Consensus 234 ~~l~~~s~el~~~l~~adLVI~KG~~Nyr~L~~~~~~~i~~-----L~~---~Kc~vva~~lG~~~g~~v~~~~ 299 (300)
T 2ffj_A 234 IIMDELPDETRKALEEADLIVAKGMANYECLSDGSLKPIAF-----LLT---AKCEPVARDIGVNVGDMVAKVV 299 (300)
T ss_dssp CCGGGCCHHHHHHHHHCSEEEEESHHHHHHHC---CCSEEE-----EEE---CCSHHHHHHHTSCTTCEEEEEE
T ss_pred cChHhCCHHHHHHHccCCEEEEECChHHHHHhCCCCcchHH-----HHH---hCCHHHHHHhCCCCCCeEEEeC
Confidence 569999999999999999999999999 22 346666 555 9999999999999999999863
No 4
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.9e-14 Score=141.42 Aligned_cols=133 Identities=20% Similarity=0.165 Sum_probs=88.1
Q ss_pred HHHHHHHHHHc------CCcchHHHHHHHHHHHHHH----hHHH---HHHHhhhhh---------hhhhHHHHHHHHHHh
Q 021170 104 CRLREQVLREL------GFRDIFKKVKDEENAKAIS----LFGD---VVRLNDVIE---------DEGKRVESLIRGIFA 161 (316)
Q Consensus 104 ~~~~e~~~~~~------G~~Dpy~~~K~~~N~~Al~----~~p~---l~~~ld~i~---------~~~d~l~~aik~aia 161 (316)
|-+||.|...+ ..-|||..+|+..-..+.. +... +.+.+++.. ...+.|..++++++.
T Consensus 112 cYlYRri~~~f~~s~~~~~~D~F~~qK~~~f~~s~~av~~La~~~~~l~~~~~~~~~~~~~~~~~~~~~~f~~~l~isLW 191 (471)
T 3pt1_A 112 VYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVVELALRYENLLPQLREMKQNPGNEIDDILKVLFKEFIEISLW 191 (471)
T ss_dssp HHHHHHHHHHHHHSTTTTTCCTTHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCcCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 45777776543 4459999999987653332 2222 222221111 124578899999999
Q ss_pred hcccccchhhHHHhhccCCC-cHH-HHHhhhcCCCCCCCcHHHHHHHhcc------cCCCeEEEEecCCC-chhhhchHH
Q 021170 162 GNIFDLGSAQLAEVFSKDGM-SFL-ASCQNLVPRPWVIDDLETFKVKWSK------KAWKKAVIFVDNSG-ADIILGILP 232 (316)
Q Consensus 162 GN~iD~Ga~~~~~~~~~~~~-~~~-~~~~~~~~~p~~idd~~~~~~~l~~------~~~k~vl~~~DNaG-EdIVfD~LP 232 (316)
||.+|+|...+... + ++ .++ ....+.+...+.+||++.+.+.|.. ...++|.|++|||| | +|+|.+
T Consensus 192 GN~~DLsl~~~~~~-~--~~~~~~~~~~~~~~~~~ilvdD~~~l~~~L~~~k~~~~~~~~rVdiVlDNaGfE-l~~Dl~- 266 (471)
T 3pt1_A 192 GNATDLSLLTNATL-E--DIKSIQGAKARAASESKIVVNDTEKAWEVLTKARADANSREIRVDFVLDNSGFE-LYADLM- 266 (471)
T ss_dssp GGGCCHHHHTCCSH-H--HHHSHHHHHHHHHHHTTEEEECHHHHHHHHHHHHHCSSCCCCEEEEECCBSTHH-HHHHHH-
T ss_pred hhhhcccccCCcch-H--hhhhhhhHHHHHHhhcCccccCHHHHHHHHHHhhccccCCCceEEEEEeCCcch-hhHHHH-
Confidence 99999998652100 0 00 111 1233346778999999999998831 12458999999999 9 999999
Q ss_pred HHHHHHhCC
Q 021170 233 FARELLRRG 241 (316)
Q Consensus 233 Li~eL~~~g 241 (316)
|+++|+..|
T Consensus 267 Lae~Ll~~g 275 (471)
T 3pt1_A 267 LAAFLLQSG 275 (471)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcC
Confidence 999998866
No 5
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=84.12 E-value=1.4 Score=41.77 Aligned_cols=51 Identities=29% Similarity=0.340 Sum_probs=40.8
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCcee--eCC---------------C-C-----C--HHHHHHhccCCEEE
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVI--DLT---------------A-V-----S--QELAYLASDADLVI 265 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~Vi--dL~---------------~-~-----S--~e~~~~~~~ADLII 265 (316)
..+++++++ +|+ +| |+. +++.|.+.|..|+ +.+ . . + .++.+.+.+||+||
T Consensus 176 ~gk~vvVIG--~G~-iV-G~~-~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVI 250 (320)
T 1edz_A 176 YGKKCIVIN--RSE-IV-GRP-LAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI 250 (320)
T ss_dssp TTCEEEEEC--CCT-TT-HHH-HHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred CCCEEEEEC--CCc-ch-HHH-HHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEE
Confidence 568899997 888 64 877 9999999999984 322 1 1 3 78999999999999
Q ss_pred E
Q 021170 266 L 266 (316)
Q Consensus 266 s 266 (316)
+
T Consensus 251 s 251 (320)
T 1edz_A 251 T 251 (320)
T ss_dssp E
T ss_pred E
Confidence 7
No 6
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=83.38 E-value=1 Score=41.95 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=44.0
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhC--CCceeeCCCCCHHHHHHhccCCEEEE
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRR--GTQVIDLTAVSQELAYLASDADLVIL 266 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~--g~~VidL~~~S~e~~~~~~~ADLIIs 266 (316)
..+++++++ .|+ +| |+. ++..|+++ |..|+-..+-++++.+.+.+||+||+
T Consensus 157 ~gk~vvVvG--~s~-iV-G~p-~A~lL~~~g~~atVtv~h~~t~~L~~~~~~ADIVI~ 209 (281)
T 2c2x_A 157 AGAHVVVIG--RGV-TV-GRP-LGLLLTRRSENATVTLCHTGTRDLPALTRQADIVVA 209 (281)
T ss_dssp TTCEEEEEC--CCT-TT-HHH-HHHHHTSTTTCCEEEEECTTCSCHHHHHTTCSEEEE
T ss_pred CCCEEEEEC--CCc-HH-HHH-HHHHHhcCCCCCEEEEEECchhHHHHHHhhCCEEEE
Confidence 568899997 677 64 766 99999999 89998888888999999999999987
No 7
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=77.55 E-value=2.1 Score=39.98 Aligned_cols=51 Identities=25% Similarity=0.288 Sum_probs=43.0
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL 266 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs 266 (316)
..+++++++ .|+ +| |+. +++.|.++|..|+-..+-++++.+.+.+||+||+
T Consensus 158 ~gk~vvVIG--~s~-iV-G~p-~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~ 208 (288)
T 1b0a_A 158 FGLNAVVIG--ASN-IV-GRP-MSMELLLAGCTTTVTHRFTKNLRHHVENADLLIV 208 (288)
T ss_dssp TTCEEEEEC--CCT-TT-HHH-HHHHHHTTTCEEEEECSSCSCHHHHHHHCSEEEE
T ss_pred CCCEEEEEC--CCh-HH-HHH-HHHHHHHCCCeEEEEeCCchhHHHHhccCCEEEE
Confidence 567888885 566 54 765 9999999999997777888999999999999986
No 8
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=76.50 E-value=3 Score=38.90 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=41.9
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL 266 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs 266 (316)
..+++++++ .|. + .|+. ++..|+++|..|+-..+-+.++.+...+||+||+
T Consensus 160 ~Gk~vvVIG--~s~-i-VG~p-~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~ 210 (285)
T 3l07_A 160 EGAYAVVVG--ASN-V-VGKP-VSQLLLNAKATVTTCHRFTTDLKSHTTKADILIV 210 (285)
T ss_dssp TTCEEEEEC--CCT-T-THHH-HHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEE
T ss_pred CCCEEEEEC--CCc-h-hHHH-HHHHHHHCCCeEEEEeCCchhHHHhcccCCEEEE
Confidence 567888884 555 4 3655 9999999999997777778899999999999987
No 9
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=74.11 E-value=4.2 Score=38.15 Aligned_cols=51 Identities=25% Similarity=0.262 Sum_probs=40.8
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHH--HHhccCCEEEE
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELA--YLASDADLVIL 266 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~--~~~~~ADLIIs 266 (316)
..+++++++ .|. + .|+- ++..|+++|..|+-..+-+..+. +...+||+||+
T Consensus 164 ~Gk~vvVIG--~s~-i-VG~p-~A~lL~~~gAtVtv~~~~T~~l~l~~~~~~ADIVI~ 216 (300)
T 4a26_A 164 AGKRAVVLG--RSN-I-VGAP-VAALLMKENATVTIVHSGTSTEDMIDYLRTADIVIA 216 (300)
T ss_dssp TTCEEEEEC--CCT-T-THHH-HHHHHHHTTCEEEEECTTSCHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEEC--CCc-h-HHHH-HHHHHHHCCCeEEEEeCCCCCchhhhhhccCCEEEE
Confidence 567888884 555 4 3655 99999999999977776677787 99999999986
No 10
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=73.55 E-value=3.7 Score=38.61 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=45.3
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
..+++++++ .|. + .|+. +++.|+++|..|+-..+-++++.+.+.+||+||+ ..|.
T Consensus 164 ~gk~vvVIG--~s~-i-VG~p-~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~-Avg~ 218 (301)
T 1a4i_A 164 AGRHAVVVG--RSK-I-VGAP-MHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVV-ATGQ 218 (301)
T ss_dssp TTCEEEEEC--CCT-T-THHH-HHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEE-CCCC
T ss_pred CCCEEEEEC--CCc-h-HHHH-HHHHHHhCCCeEEEEECCcccHHHHhccCCEEEE-CCCC
Confidence 567888886 465 5 3765 9999999999997777778899999999999998 5665
No 11
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=72.45 E-value=4 Score=38.04 Aligned_cols=51 Identities=31% Similarity=0.389 Sum_probs=41.7
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL 266 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs 266 (316)
..+++++++ .|. + .|+- ++..|+++|..|+-..+-++.+.+...+||+||+
T Consensus 159 ~Gk~vvVvG--rs~-i-VG~p-~A~lL~~~gAtVtv~h~~t~~L~~~~~~ADIVI~ 209 (285)
T 3p2o_A 159 EGKDAVIIG--ASN-I-VGRP-MATMLLNAGATVSVCHIKTKDLSLYTRQADLIIV 209 (285)
T ss_dssp TTCEEEEEC--CCT-T-THHH-HHHHHHHTTCEEEEECTTCSCHHHHHTTCSEEEE
T ss_pred CCCEEEEEC--CCc-h-HHHH-HHHHHHHCCCeEEEEeCCchhHHHHhhcCCEEEE
Confidence 568888886 444 3 3655 9999999999997777778899999999999986
No 12
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=70.55 E-value=4.1 Score=37.84 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=41.4
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL 266 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs 266 (316)
..+++++++ .|+ + .|+- ++..|+++|..|+-..+-+..+.+...+||+||+
T Consensus 149 ~Gk~vvVvG--~s~-i-VG~p-lA~lL~~~gAtVtv~~~~t~~L~~~~~~ADIVI~ 199 (276)
T 3ngx_A 149 HENTVTIVN--RSP-V-VGRP-LSMMLLNRNYTVSVCHSKTKDIGSMTRSSKIVVV 199 (276)
T ss_dssp CSCEEEEEC--CCT-T-THHH-HHHHHHHTTCEEEEECTTCSCHHHHHHHSSEEEE
T ss_pred CCCEEEEEc--CCh-H-HHHH-HHHHHHHCCCeEEEEeCCcccHHHhhccCCEEEE
Confidence 467888886 444 4 3655 9999999999997777778889999999999987
No 13
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=58.41 E-value=21 Score=28.18 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCchhhhchHHHHHHHHhCCCce
Q 021170 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQV 244 (316)
Q Consensus 212 ~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V 244 (316)
.+++++++ +|. +|.. +++.|.+.|.+|
T Consensus 7 ~~~viIiG--~G~---~G~~-la~~L~~~g~~v 33 (140)
T 3fwz_A 7 CNHALLVG--YGR---VGSL-LGEKLLASDIPL 33 (140)
T ss_dssp CSCEEEEC--CSH---HHHH-HHHHHHHTTCCE
T ss_pred CCCEEEEC--cCH---HHHH-HHHHHHHCCCCE
Confidence 35688888 688 6877 999999999888
No 14
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=56.97 E-value=10 Score=35.29 Aligned_cols=52 Identities=33% Similarity=0.324 Sum_probs=41.2
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEc
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILE 267 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsK 267 (316)
..+++++++ .|. + .|+- ++..|.++|..|+-..+-++.+.+...+||+||+=
T Consensus 160 ~Gk~vvVvG--rs~-i-VG~p-lA~lL~~~gAtVtv~hs~T~~L~~~~~~ADIVI~A 211 (286)
T 4a5o_A 160 YGMDAVVVG--ASN-I-VGRP-MALELLLGGCTVTVTHRFTRDLADHVSRADLVVVA 211 (286)
T ss_dssp TTCEEEEEC--TTS-T-THHH-HHHHHHHTTCEEEEECTTCSCHHHHHHTCSEEEEC
T ss_pred CCCEEEEEC--CCc-h-hHHH-HHHHHHHCCCeEEEEeCCCcCHHHHhccCCEEEEC
Confidence 568888886 334 3 3644 99999999999977767677899999999999873
No 15
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=54.23 E-value=30 Score=27.69 Aligned_cols=29 Identities=38% Similarity=0.406 Sum_probs=24.8
Q ss_pred cCCCeEEEEecCCCchhhhchHHHHHHHHhCCCce
Q 021170 210 KAWKKAVIFVDNSGADIILGILPFARELLRRGTQV 244 (316)
Q Consensus 210 ~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V 244 (316)
.+.+++++++ +|. +|.. +++.|.+.|.+|
T Consensus 17 ~~~~~v~IiG--~G~---iG~~-la~~L~~~g~~V 45 (155)
T 2g1u_A 17 QKSKYIVIFG--CGR---LGSL-IANLASSSGHSV 45 (155)
T ss_dssp CCCCEEEEEC--CSH---HHHH-HHHHHHHTTCEE
T ss_pred cCCCcEEEEC--CCH---HHHH-HHHHHHhCCCeE
Confidence 4567899998 799 6888 999999999888
No 16
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=52.59 E-value=27 Score=27.22 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCchhhhchHHHHHHHHhCCCce
Q 021170 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQV 244 (316)
Q Consensus 212 ~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V 244 (316)
.+++++++ +|. +|.- +++.|.+.|.+|
T Consensus 6 ~~~v~I~G--~G~---iG~~-la~~L~~~g~~V 32 (141)
T 3llv_A 6 RYEYIVIG--SEA---AGVG-LVRELTAAGKKV 32 (141)
T ss_dssp CCSEEEEC--CSH---HHHH-HHHHHHHTTCCE
T ss_pred CCEEEEEC--CCH---HHHH-HHHHHHHCCCeE
Confidence 35788888 588 5877 999999999888
No 17
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=50.83 E-value=9.1 Score=32.41 Aligned_cols=65 Identities=26% Similarity=0.292 Sum_probs=42.5
Q ss_pred CCCcHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHh-C----------CCceeeCCCCCHHHHHHh----cc
Q 021170 196 VIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLR-R----------GTQVIDLTAVSQELAYLA----SD 260 (316)
Q Consensus 196 ~idd~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~-~----------g~~VidL~~~S~e~~~~~----~~ 260 (316)
.....+..++.+ .+++++++-+-|--- |+ .+...+. - .|+.-||.|++.=.+.++ .+
T Consensus 22 k~EEv~~Ir~~I--~nakkIvV~t~N~kK---f~---vi~~il~~~~~~~i~~l~i~Tn~aDlTRmPA~~K~LmAvD~~d 93 (156)
T 3brc_A 22 RSEEVEAIRKYI--RSARRTVVPNWNAEK---VD---AINDVLRSFNLREAEHLQFNTNWADLTRMPAVTKALMALDISG 93 (156)
T ss_dssp CHHHHHHHHHHH--HHCSCEEECCCCHHH---HH---HHHHHHHHTTCCCCEECCSCCGGGGGSSSHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHH--hcCCeEEEecCCchH---hH---HHHHHHHHhcCCccceeeccCcchhcccCcHHHHHHHheeccC
Confidence 334456677777 779999887766332 33 2233222 2 233378999988777776 48
Q ss_pred CCEEEEcC
Q 021170 261 ADLVILEG 268 (316)
Q Consensus 261 ADLIIsKG 268 (316)
|||||+.|
T Consensus 94 ADlvIARG 101 (156)
T 3brc_A 94 ADLVIARG 101 (156)
T ss_dssp CSEEEEEE
T ss_pred CcEEEEcc
Confidence 99999997
No 18
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=48.36 E-value=19 Score=31.40 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=40.6
Q ss_pred CCeEEEEecCCCc-h--hhhchHHHHHHHHhCCCce--eeCCCC-CHHHHHHhccCCEEEEcCCCC
Q 021170 212 WKKAVIFVDNSGA-D--IILGILPFARELLRRGTQV--IDLTAV-SQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 212 ~k~vl~~~DNaGE-d--IVfD~LPLi~eL~~~g~~V--idL~~~-S~e~~~~~~~ADLIIsKGmGn 271 (316)
.++|+|+.-.+|. | -.+. - +.+.|.+.|.+| +++... +++..+.+.+||.|+.=| ||
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~-s-~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~G-G~ 89 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVE-A-GKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTG-GN 89 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHH-H-HHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECC-SC
T ss_pred CCEEEEECCCCCCCCHHHHHH-H-HHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECC-CC
Confidence 5788888777772 1 1233 3 466788889888 444443 456778899999999999 99
No 19
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=47.33 E-value=42 Score=26.62 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=23.6
Q ss_pred CCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCC
Q 021170 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTA 249 (316)
Q Consensus 212 ~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~ 249 (316)
.+++++++ +|. ++.- +++.|.+.|.+|+-+++
T Consensus 3 ~~~vlI~G--~G~---vG~~-la~~L~~~g~~V~vid~ 34 (153)
T 1id1_A 3 KDHFIVCG--HSI---LAIN-TILQLNQRGQNVTVISN 34 (153)
T ss_dssp CSCEEEEC--CSH---HHHH-HHHHHHHTTCCEEEEEC
T ss_pred CCcEEEEC--CCH---HHHH-HHHHHHHCCCCEEEEEC
Confidence 45688887 688 5777 89999888888844333
No 20
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=45.91 E-value=37 Score=25.88 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCchhhhchHHHHHHHHhCCCce
Q 021170 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQV 244 (316)
Q Consensus 212 ~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V 244 (316)
.+++++++ +|. +|.. +++.|.+.|.+|
T Consensus 6 ~~~v~I~G--~G~---iG~~-~a~~l~~~g~~v 32 (144)
T 2hmt_A 6 NKQFAVIG--LGR---FGGS-IVKELHRMGHEV 32 (144)
T ss_dssp CCSEEEEC--CSH---HHHH-HHHHHHHTTCCC
T ss_pred CCcEEEEC--CCH---HHHH-HHHHHHHCCCEE
Confidence 35789998 588 5877 999999999887
No 21
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=42.79 E-value=34 Score=29.00 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=19.0
Q ss_pred eEEEEecCCCchhhhchHHHHHHHHhCCCce
Q 021170 214 KAVIFVDNSGADIILGILPFARELLRRGTQV 244 (316)
Q Consensus 214 ~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V 244 (316)
++++++ +|. +|.- +++.|.+.|.+|
T Consensus 2 ~iiIiG--~G~---~G~~-la~~L~~~g~~v 26 (218)
T 3l4b_C 2 KVIIIG--GET---TAYY-LARSMLSRKYGV 26 (218)
T ss_dssp CEEEEC--CHH---HHHH-HHHHHHHTTCCE
T ss_pred EEEEEC--CCH---HHHH-HHHHHHhCCCeE
Confidence 467777 577 5777 888888888877
No 22
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=41.44 E-value=63 Score=24.41 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=22.1
Q ss_pred CCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeC
Q 021170 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVIDL 247 (316)
Q Consensus 212 ~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL 247 (316)
..++++++ +|. ++.. +++.|.+.|.+|+-.
T Consensus 4 ~m~i~IiG--~G~---iG~~-~a~~L~~~g~~v~~~ 33 (140)
T 1lss_A 4 GMYIIIAG--IGR---VGYT-LAKSLSEKGHDIVLI 33 (140)
T ss_dssp -CEEEEEC--CSH---HHHH-HHHHHHHTTCEEEEE
T ss_pred CCEEEEEC--CCH---HHHH-HHHHHHhCCCeEEEE
Confidence 35688886 688 5777 999999999888333
No 23
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=40.16 E-value=59 Score=27.14 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=50.2
Q ss_pred EEEecCCCchhhhchHHHHHHHHhCCCce--eeCCCCCHHHHHHhccCC---EEEEcCCCCCCCccchhhcccchhhhcc
Q 021170 216 VIFVDNSGADIILGILPFARELLRRGTQV--IDLTAVSQELAYLASDAD---LVILEGMGRGIETNLYAQFKCDSLKIGM 290 (316)
Q Consensus 216 l~~~DNaGEdIVfD~LPLi~eL~~~g~~V--idL~~~S~e~~~~~~~AD---LIIsKGmGn~~~~ni~~~f~cdllkL~~ 290 (316)
+.+.||-|. |... +++.|.+.|.++ +....-.+++.+.+...| +||+=|-|+..+..+.. ++++.+.
T Consensus 3 i~iiDn~~s---~~~~-i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~----~l~~~~~ 74 (192)
T 1i1q_B 3 ILLLDNIDS---FTWN-LADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMP----ELLTRLR 74 (192)
T ss_dssp EEEEECSCS---SHHH-HHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHH----HHHHHHB
T ss_pred EEEEECCcc---HHHH-HHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcCchhCchHH----HHHHHHh
Confidence 456789888 5667 899999999877 333322366666665444 99999999832222111 1222100
Q ss_pred C---------CCHHHHHHhCCCCC
Q 021170 291 V---------KHPEVAQFLGGRLY 305 (316)
Q Consensus 291 v---------KC~~vA~~lG~~~g 305 (316)
. =++.+|..+|+.++
T Consensus 75 ~~~PilGIC~G~Qll~~~~Gg~v~ 98 (192)
T 1i1q_B 75 GKLPIIGICLGHQAIVEAYGGYVG 98 (192)
T ss_dssp TTBCEEEETHHHHHHHHHTSCCCC
T ss_pred cCCCEEEECcChHHHHHHhCCEEE
Confidence 1 13677888888765
No 24
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=37.39 E-value=48 Score=27.01 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=22.8
Q ss_pred CCeEEEEecCCCchhhhchHHHHHHHHhC-CCce
Q 021170 212 WKKAVIFVDNSGADIILGILPFARELLRR-GTQV 244 (316)
Q Consensus 212 ~k~vl~~~DNaGEdIVfD~LPLi~eL~~~-g~~V 244 (316)
.+++++++ +|. +|.. +++.|.+. |.+|
T Consensus 39 ~~~v~IiG--~G~---~G~~-~a~~L~~~~g~~V 66 (183)
T 3c85_A 39 HAQVLILG--MGR---IGTG-AYDELRARYGKIS 66 (183)
T ss_dssp TCSEEEEC--CSH---HHHH-HHHHHHHHHCSCE
T ss_pred CCcEEEEC--CCH---HHHH-HHHHHHhccCCeE
Confidence 45789998 798 6877 99999998 9888
No 25
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=33.49 E-value=1.7e+02 Score=27.30 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=49.3
Q ss_pred HHhhcccccchhhHHHhhccCCCcHHHHHhhhcCCCC-------CCCcHHHHHHHhcccCCCeEEEEecCCCchhhhchH
Q 021170 159 IFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPW-------VIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGIL 231 (316)
Q Consensus 159 aiaGN~iD~Ga~~~~~~~~~~~~~~~~~~~~~~~~p~-------~idd~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~L 231 (316)
---|..|=+|+.. ++.+.+.+.+++.-.= ..-.+++..+++. .+.+.|-|+++.+-+ .+ -.-
T Consensus 148 ~~fg~~lK~Gi~e--------D~~nr~~l~~LLrF~Ss~~~~~~~~~SL~eYv~rmk-e~Qk~IYYitg~s~~-~~-~~s 216 (303)
T 2gq0_A 148 QQFGLVLKEGPAE--------DFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMK-EGQEKIYYITADSYA-AA-KSS 216 (303)
T ss_dssp HHHHHHHTTHHHH--------CGGGHHHHHTTCCBEETTTTCCCCCBCHHHHHHTCC-TTCCSEEEEECSSHH-HH-HTC
T ss_pred HHHHHHHhhhhhc--------CHHHHHHHHHhheeeecCCCccCCeeeHHHHHHhcc-cCCceEEEEeCCCHH-HH-hcC
Confidence 3456666666654 3344444555433111 1234677788874 455779999987777 43 567
Q ss_pred HHHHHHHhCCCcee
Q 021170 232 PFARELLRRGTQVI 245 (316)
Q Consensus 232 PLi~eL~~~g~~Vi 245 (316)
|+++.++++|.+|+
T Consensus 217 p~lE~~k~kG~EVL 230 (303)
T 2gq0_A 217 PHLELLRKKGIEVL 230 (303)
T ss_dssp GGGHHHHHHTCCEE
T ss_pred hHHHHHHHCCCeEE
Confidence 89999999999993
No 26
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=33.32 E-value=63 Score=29.35 Aligned_cols=65 Identities=28% Similarity=0.375 Sum_probs=41.7
Q ss_pred HHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHH------------hccCCEEEE--
Q 021170 201 ETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYL------------ASDADLVIL-- 266 (316)
Q Consensus 201 ~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~------------~~~ADLIIs-- 266 (316)
.-|...|...+.+++++++ +|. + ++- .+..|.+.|.+|+-.+|-.+...++ +.++|+||.
T Consensus 107 ~Gf~~~L~~~~~k~vlvlG--aGG-a--ara-ia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l~~~DiVInaT 180 (269)
T 3phh_A 107 LGFYLSLKQKNYQNALILG--AGG-S--AKA-LACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPKSAFDLIINAT 180 (269)
T ss_dssp HHHHHHCC---CCEEEEEC--CSH-H--HHH-HHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCSSCCSEEEECC
T ss_pred HHHHHHHHHcCCCEEEEEC--CCH-H--HHH-HHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHhccCCEEEEcc
Confidence 3444444211268899998 688 4 677 8999999998886666655443332 126899993
Q ss_pred -cCCCC
Q 021170 267 -EGMGR 271 (316)
Q Consensus 267 -KGmGn 271 (316)
-||..
T Consensus 181 p~Gm~~ 186 (269)
T 3phh_A 181 SASLHN 186 (269)
T ss_dssp TTCCCC
T ss_pred cCCCCC
Confidence 57643
No 27
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=33.06 E-value=51 Score=24.12 Aligned_cols=49 Identities=22% Similarity=0.178 Sum_probs=31.5
Q ss_pred CCeEEEEecCCCchhhhchHHHHHHHHhCC-Ccee--------------------eCCCCC-HHHHHHhccCCEEEE
Q 021170 212 WKKAVIFVDNSGADIILGILPFARELLRRG-TQVI--------------------DLTAVS-QELAYLASDADLVIL 266 (316)
Q Consensus 212 ~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g-~~Vi--------------------dL~~~S-~e~~~~~~~ADLIIs 266 (316)
.+++++++= |- +|.- +++.|.+.| .+|+ ..+..+ +++.+++.++|+||.
T Consensus 5 ~~~v~I~G~--G~---iG~~-~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~ 75 (118)
T 3ic5_A 5 RWNICVVGA--GK---IGQM-IAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVIS 75 (118)
T ss_dssp CEEEEEECC--SH---HHHH-HHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred cCeEEEECC--CH---HHHH-HHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEE
Confidence 356777774 77 4766 888888888 6661 122222 445566777888775
No 28
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=32.34 E-value=2.9e+02 Score=25.18 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=42.7
Q ss_pred cHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCC-CCCHHHHHHhccCC
Q 021170 199 DLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLT-AVSQELAYLASDAD 262 (316)
Q Consensus 199 d~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~-~~S~e~~~~~~~AD 262 (316)
.+++..+++. .+.+.|.|++..+=+ .+ -..|+++.++++|.+|+-+. .+.+-+.+.+.+-|
T Consensus 186 SL~eYv~rmk-e~Q~~IyYitg~s~~-~~-~~sp~~E~~k~kg~EVL~l~d~iDe~~i~~L~ef~ 247 (268)
T 3pry_A 186 SLSEYVSRMK-ETQKSIYYITGESKE-QV-ANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFD 247 (268)
T ss_dssp EHHHHHHTSC-TTCCEEEEECSCCHH-HH-HTCHHHHHHHTTTCCEEECCSTTHHHHHHHHCEET
T ss_pred eHHHHHHhcc-cCCceEEEEeCCCHH-HH-HhChHHHHHHHcCceEEEeCCchHHHHHHHHHhcC
Confidence 4677788873 456779999876666 43 56899999999999996654 44444556555433
No 29
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=32.10 E-value=20 Score=27.10 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=18.0
Q ss_pred CCCHHHHHHhCCCCCCeEEEe
Q 021170 291 VKHPEVAQFLGGRLYDCVFKY 311 (316)
Q Consensus 291 vKC~~vA~~lG~~~gd~V~~~ 311 (316)
-+.+++|+.+|.+.||+|=.-
T Consensus 40 ~~~DPvar~~G~k~GdVvkI~ 60 (77)
T 1eik_A 40 KTTDPVAKAIGAKRGDIVKII 60 (77)
T ss_dssp BTTSHHHHGGGCCTTCEEEEE
T ss_pred eCcCHhhHHhCCCCCCEEEEE
Confidence 378999999999999988653
No 30
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=32.09 E-value=30 Score=29.07 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=36.1
Q ss_pred EEEEecCCCchhhhc---hHHHHHHHHhCCCceee-------CCCCCHHHHHHhcc--CCEEEEcC-CCC
Q 021170 215 AVIFVDNSGADIILG---ILPFARELLRRGTQVID-------LTAVSQELAYLASD--ADLVILEG-MGR 271 (316)
Q Consensus 215 vl~~~DNaGEdIVfD---~LPLi~eL~~~g~~Vid-------L~~~S~e~~~~~~~--ADLIIsKG-mGn 271 (316)
|+-.+|..|. | .| .. +.+.|.+.|.+|.. .+.+...+.++.++ +|+||.=| .|-
T Consensus 15 Ii~tGdE~g~-i-~D~n~~~-l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~ 81 (172)
T 1mkz_A 15 ILTVSNRRGE-E-DDTSGHY-LRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGL 81 (172)
T ss_dssp EEEECSSCCG-G-GCHHHHH-HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSS
T ss_pred EEEEeCCCCc-c-cCccHHH-HHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 6777899998 6 45 34 55667788998843 33455566667764 99888754 444
No 31
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=31.80 E-value=70 Score=30.62 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=36.5
Q ss_pred CCeEEEEecCCCchhhhchHHHHHHHHhCCCce--------------------eeCCCCCHHHHHHh--ccCCEEEEcCC
Q 021170 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQV--------------------IDLTAVSQELAYLA--SDADLVILEGM 269 (316)
Q Consensus 212 ~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V--------------------idL~~~S~e~~~~~--~~ADLIIsKGm 269 (316)
..+|+|++ +|. +|.. +++.|.+.|.+| +--+-.++++.+.. .+||+||+ .+
T Consensus 4 ~~~viIiG--~Gr---~G~~-va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv-~~ 76 (413)
T 3l9w_A 4 GMRVIIAG--FGR---FGQI-TGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLIN-AI 76 (413)
T ss_dssp CCSEEEEC--CSH---HHHH-HHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEE-CC
T ss_pred CCeEEEEC--CCH---HHHH-HHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEE-CC
Confidence 34588888 688 6888 999999888887 22345566666554 67887766 33
Q ss_pred CC
Q 021170 270 GR 271 (316)
Q Consensus 270 Gn 271 (316)
++
T Consensus 77 ~~ 78 (413)
T 3l9w_A 77 DD 78 (413)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 32
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=30.86 E-value=20 Score=27.11 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=18.4
Q ss_pred CCCHHHHHHhCCCCCCeEEEec
Q 021170 291 VKHPEVAQFLGGRLYDCVFKYN 312 (316)
Q Consensus 291 vKC~~vA~~lG~~~gd~V~~~~ 312 (316)
-+.+++|+.+|.+.||+|=.-.
T Consensus 38 ~~~DPvar~~G~k~GdVvkI~R 59 (78)
T 1hmj_A 38 YEDDPVIQEIGAKEGDVVRVIR 59 (78)
T ss_pred eCcCHhhHHhCCCCCCEEEEEE
Confidence 3789999999999999886533
No 33
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=30.14 E-value=10 Score=28.91 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=27.2
Q ss_pred cCCEEEEcCCCC-C-------CCccchhhcccchhhhccCCCHHHHHHhC--CCCCCeE
Q 021170 260 DADLVILEGMGR-G-------IETNLYAQFKCDSLKIGMVKHPEVAQFLG--GRLYDCV 308 (316)
Q Consensus 260 ~ADLIIsKGmGn-~-------~~~ni~~~f~cdllkL~~vKC~~vA~~lG--~~~gd~V 308 (316)
.|-.|++||+|. + -+.++.- +.++++|+.|- +++|+.|
T Consensus 16 ~aP~VvAKG~~~~A~~I~~~A~e~~VPi-----------~e~~~LAr~L~~~~~ig~~I 63 (83)
T 3bzy_B 16 PLPLVIETGKDAKALQIIKLAELYDIPV-----------IEDIPLARSLDKNIHKGQYI 63 (83)
T ss_dssp SSCEEEEEEETHHHHHHHHHHHHTTCCE-----------EECHHHHHHHHHHCCTTCBC
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHcCCCE-----------EeCHHHHHHHHHhCCCCCcc
Confidence 588999999999 1 1234433 78899999775 6777654
No 34
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=29.58 E-value=1.7e+02 Score=28.72 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=33.5
Q ss_pred cHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhCCCce
Q 021170 199 DLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQV 244 (316)
Q Consensus 199 d~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V 244 (316)
.+++..+++. .+.+.|.|+++.+=+ . +-..|+++.++++|.+|
T Consensus 202 SL~eYv~rmk-e~Qk~IYYitg~s~~-~-~~~sp~lE~~k~kG~EV 244 (444)
T 3hjc_A 202 TLKDYVTRMK-AGQKSIYYITGDSKK-K-LETSPFIEQARRRGLEV 244 (444)
T ss_dssp CHHHHHHTCC-TTCCEEEEEECSCHH-H-HHTCGGGHHHHHHTCCE
T ss_pred cHHHHHHhcc-ccCceEEEEeCCCHH-H-HHhChHHHHHHhCCcEE
Confidence 4677777873 456779999987766 4 35688999999999999
No 35
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=35.39 E-value=12 Score=28.87 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=26.3
Q ss_pred cCCEEEEcCCCC-C-------CCccchhhcccchhhhccCCCHHHHHHhC--CCCCCeE
Q 021170 260 DADLVILEGMGR-G-------IETNLYAQFKCDSLKIGMVKHPEVAQFLG--GRLYDCV 308 (316)
Q Consensus 260 ~ADLIIsKGmGn-~-------~~~ni~~~f~cdllkL~~vKC~~vA~~lG--~~~gd~V 308 (316)
.|-.|++||+|. + -+.++.- +.++++|+.|- +++|+.|
T Consensus 16 ~AP~VvAKG~~~~A~~I~e~A~e~~VPi-----------~e~~~LAr~Ly~~~~ig~~I 63 (87)
T 3b1s_B 16 KAPVVVAKGKGTIAQKIVEIAENYSIPV-----------VRKPELARALYPAVEVGKEI 63 (87)
Confidence 588999999999 2 1224433 78888888775 5666654
No 36
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=29.03 E-value=50 Score=28.56 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=24.6
Q ss_pred CeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCC
Q 021170 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTA 249 (316)
Q Consensus 213 k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~ 249 (316)
++|++.+ ||- +|.- +++.|+++|.+|+-+.|
T Consensus 6 ~~ilVtG--aG~---iG~~-l~~~L~~~g~~V~~~~r 36 (286)
T 3ius_A 6 GTLLSFG--HGY---TARV-LSRALAPQGWRIIGTSR 36 (286)
T ss_dssp CEEEEET--CCH---HHHH-HHHHHGGGTCEEEEEES
T ss_pred CcEEEEC--CcH---HHHH-HHHHHHHCCCEEEEEEc
Confidence 6788888 488 5888 99999999999844433
No 37
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=28.35 E-value=97 Score=28.01 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=26.9
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCce
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQV 244 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V 244 (316)
..-+|++++-..|- .+.-.++++++|.++|.+|
T Consensus 19 ~~MrIl~~~~~~~G-h~~~~~~la~~L~~~GheV 51 (412)
T 3otg_A 19 RHMRVLFASLGTHG-HTYPLLPLATAARAAGHEV 51 (412)
T ss_dssp CSCEEEEECCSSHH-HHGGGHHHHHHHHHTTCEE
T ss_pred ceeEEEEEcCCCcc-cHHHHHHHHHHHHHCCCEE
Confidence 34578999877666 6677889999999999988
No 38
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=27.64 E-value=32 Score=28.70 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=34.8
Q ss_pred EEEEecCCCchhhhchH-H-HHHHHHhCCCceee-------CCCCCHHHHHHhc--cCCEEEEcC
Q 021170 215 AVIFVDNSGADIILGIL-P-FARELLRRGTQVID-------LTAVSQELAYLAS--DADLVILEG 268 (316)
Q Consensus 215 vl~~~DNaGEdIVfD~L-P-Li~eL~~~g~~Vid-------L~~~S~e~~~~~~--~ADLIIsKG 268 (316)
|+-.+|..|+ | .|.- | +.+.|.+.|.+|.. .+.+...+.++.+ ++|+||.=|
T Consensus 18 Ii~tGdElg~-i-~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittG 80 (169)
T 1y5e_A 18 IVTISDTRTE-E-TDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNG 80 (169)
T ss_dssp EEEECSSCCT-T-TCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEEC
T ss_pred EEEEcCccCe-e-ccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 6677888876 5 4521 3 55566778998843 3445566777777 899988764
No 39
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=27.57 E-value=71 Score=25.72 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=33.1
Q ss_pred CeEEEEecCCCchhhhchHHHHHHHHhCCCcee--------------------eCCCCC-HHHHHHhccCCEEEE
Q 021170 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVI--------------------DLTAVS-QELAYLASDADLVIL 266 (316)
Q Consensus 213 k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~Vi--------------------dL~~~S-~e~~~~~~~ADLIIs 266 (316)
+++++++-+ |- +|.- ++++|+++|.+|+ ..+..+ +.+.++++++|.||.
T Consensus 4 ~~ilVtGat-G~---iG~~-l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~ 73 (206)
T 1hdo_A 4 KKIAIFGAT-GQ---TGLT-TLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIV 73 (206)
T ss_dssp CEEEEESTT-SH---HHHH-HHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEE
T ss_pred CEEEEEcCC-cH---HHHH-HHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 566666544 54 4877 9999999998871 112223 356788889998885
No 40
>3b0z_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.45A {Salmonella enterica subsp}
Probab=33.11 E-value=13 Score=29.98 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=26.1
Q ss_pred cCCEEEEcCCCC-CC-------CccchhhcccchhhhccCCCHHHHHHh--CCCCCCeE
Q 021170 260 DADLVILEGMGR-GI-------ETNLYAQFKCDSLKIGMVKHPEVAQFL--GGRLYDCV 308 (316)
Q Consensus 260 ~ADLIIsKGmGn-~~-------~~ni~~~f~cdllkL~~vKC~~vA~~l--G~~~gd~V 308 (316)
.|-.|++||.|. +. +.++.- +.++++|+.| .+++|+.|
T Consensus 16 ~AP~VvAKG~~~~A~~I~e~A~e~gVPi-----------~e~~~LAr~Ly~~~~ig~~I 63 (114)
T 3b0z_B 16 SAPKVVAKGAGLIALRIREIGAEHRVPT-----------LEAPPLARALYRHAEIGQQI 63 (114)
Confidence 578999999999 21 223433 7888888877 36666654
No 41
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=27.03 E-value=39 Score=31.62 Aligned_cols=55 Identities=35% Similarity=0.437 Sum_probs=43.4
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
..|++++++ .+. | .| -|+.-.|+++|..|+--..-++.+.+...+||+||+ +.|+
T Consensus 178 ~Gk~vvViG--RS~-i-VG-kPla~LL~~~~ATVTi~Hs~T~dl~~~~~~ADIvV~-A~G~ 232 (303)
T 4b4u_A 178 AGKHAVVVG--RSA-I-LG-KPMAMMLLQANATVTICHSRTQNLPELVKQADIIVG-AVGK 232 (303)
T ss_dssp TTCEEEEEC--CCT-T-TH-HHHHHHHHHTTCEEEEECTTCSSHHHHHHTCSEEEE-CSCS
T ss_pred CCCEEEEEe--ccc-c-cc-chHHHHHHhcCCEEEEecCCCCCHHHHhhcCCeEEe-ccCC
Confidence 568888885 455 5 47 569999999999996666667889999999998886 3565
No 42
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=26.97 E-value=53 Score=27.93 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=30.5
Q ss_pred CCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEE
Q 021170 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVIL 266 (316)
Q Consensus 212 ~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIs 266 (316)
..++.+++ +|. .+.. +++.|.+.|.+|+-.++-.+ .+.++|+||+
T Consensus 19 ~~~I~iiG--~G~---mG~~-la~~l~~~g~~V~~~~~~~~----~~~~aD~vi~ 63 (209)
T 2raf_A 19 GMEITIFG--KGN---MGQA-IGHNFEIAGHEVTYYGSKDQ----ATTLGEIVIM 63 (209)
T ss_dssp -CEEEEEC--CSH---HHHH-HHHHHHHTTCEEEEECTTCC----CSSCCSEEEE
T ss_pred CCEEEEEC--CCH---HHHH-HHHHHHHCCCEEEEEcCCHH----HhccCCEEEE
Confidence 46799998 899 5877 99999999988833333221 4455665553
No 43
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=26.53 E-value=32 Score=29.94 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=22.6
Q ss_pred CeEEEEecCCCchhhhchHHHHHHHHhCCCce
Q 021170 213 KKAVIFVDNSGADIILGILPFARELLRRGTQV 244 (316)
Q Consensus 213 k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V 244 (316)
++||+.+ ||- +|.- +++.|+++|.+|
T Consensus 4 ~~ilVtG--aG~---iG~~-l~~~L~~~g~~V 29 (286)
T 3gpi_A 4 SKILIAG--CGD---LGLE-LARRLTAQGHEV 29 (286)
T ss_dssp CCEEEEC--CSH---HHHH-HHHHHHHTTCCE
T ss_pred CcEEEEC--CCH---HHHH-HHHHHHHCCCEE
Confidence 5788888 597 5988 999999999988
No 44
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=25.80 E-value=2.8e+02 Score=22.78 Aligned_cols=114 Identities=12% Similarity=0.179 Sum_probs=63.8
Q ss_pred hHHHHHHHHHH-h-hcccccchhhHHHhhccCCCcHHHHHhhhcCCCCCCCcHHHHHHHhcccCCCeEEEEecCCCchhh
Q 021170 150 KRVESLIRGIF-A-GNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADII 227 (316)
Q Consensus 150 d~l~~aik~ai-a-GN~iD~Ga~~~~~~~~~~~~~~~~~~~~~~~~p~~idd~~~~~~~l~~~~~k~vl~~~DNaGEdIV 227 (316)
+.+..+++... + ++++=+|.....- . ...|...+.++-..-..+.+.+.+...+..-..+.++++.-++|+ .
T Consensus 32 ~~i~~~~~~i~~a~~~I~i~G~G~S~~-~---A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dvvI~iS~sG~-t- 105 (201)
T 3fxa_A 32 EALVKTVEKIAECTGKIVVAGCGTSGV-A---AKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGN-T- 105 (201)
T ss_dssp HHHHHHHHHHHHCSSCEEEECCTHHHH-H---HHHHHHHHHHTTCCEEECCHHHHTTTGGGGCCTTCEEEEECSSSC-C-
T ss_pred HHHHHHHHHHHhcCCcEEEEEecHHHH-H---HHHHHHHHHhcCCcEEEeCchHHHhhhhhcCCCCCEEEEEeCCCC-C-
Confidence 56777766655 4 4788787644210 0 113444445432222445555433322211245668999999998 4
Q ss_pred hchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 228 LGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 228 fD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
-+.+-.++.++++|.+|+-+..-... .+.+-||.+|.=.-+.
T Consensus 106 ~~~~~~~~~ak~~g~~vi~IT~~~~s--~l~~~ad~~l~~~~~~ 147 (201)
T 3fxa_A 106 GELLNLIPACKTKGSTLIGVTENPDS--VIAKEADIFFPVSVSK 147 (201)
T ss_dssp HHHHTTHHHHHHHTCEEEEEESCTTS--HHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCC--hhHHhCCEEEEcCCCc
Confidence 24455778889999999555432221 1223488888766554
No 45
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A
Probab=25.46 E-value=90 Score=29.18 Aligned_cols=44 Identities=11% Similarity=0.205 Sum_probs=32.9
Q ss_pred CchhhhchHHHHHHHHhCCCce----e---eCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 223 GADIILGILPFARELLRRGTQV----I---DLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 223 GEdIVfD~LPLi~eL~~~g~~V----i---dL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
|+ +||+.. .|..- .+.+| + +--..+++..+++.+||+||. |+||
T Consensus 143 G~-~v~ge~-~I~~~--~~~~I~~v~l~~~~~~~a~p~vl~AI~~AD~Ivl-gPGS 193 (311)
T 3c3d_A 143 GI-MHFQDF-WIGKR--GEPDVRGVDIRGVSEASISPKVLEAFEKEENILI-GPSN 193 (311)
T ss_dssp CE-EEHHHH-HTTST--TCSCEEEEEEETTTTCCCCHHHHHHHHHCCEEEE-CSSC
T ss_pred CC-EEEEee-ccCCC--CCCCeeEEEEcCccCCCCCHHHHHHHHhCCEEEE-CCCC
Confidence 88 999987 55532 13365 2 235678899999999999876 9999
No 46
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=25.41 E-value=45 Score=30.19 Aligned_cols=30 Identities=13% Similarity=0.311 Sum_probs=26.3
Q ss_pred eEEEEecCCCchhhhchHHHHHHHHhCCCce
Q 021170 214 KAVIFVDNSGADIILGILPFARELLRRGTQV 244 (316)
Q Consensus 214 ~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V 244 (316)
+|++++...+- .+...+|++++|.++|.+|
T Consensus 3 rIl~~~~~~~g-h~~~~~~la~~L~~~GheV 32 (391)
T 3tsa_A 3 RVLVVPLPYPT-HLMAMVPLCWALQASGHEV 32 (391)
T ss_dssp EEEEECCSCHH-HHHTTHHHHHHHHHTTCEE
T ss_pred EEEEEcCCCcc-hhhhHHHHHHHHHHCCCEE
Confidence 68888887666 7788999999999999998
No 47
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=25.18 E-value=10 Score=29.54 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=27.1
Q ss_pred cCCEEEEcCCCC-C-------CCccchhhcccchhhhccCCCHHHHHHhC--CCCCCeE
Q 021170 260 DADLVILEGMGR-G-------IETNLYAQFKCDSLKIGMVKHPEVAQFLG--GRLYDCV 308 (316)
Q Consensus 260 ~ADLIIsKGmGn-~-------~~~ni~~~f~cdllkL~~vKC~~vA~~lG--~~~gd~V 308 (316)
.|-.|++||+|. + -+.++.- +.++++|+.|- +++|+.|
T Consensus 16 ~AP~VvAKG~~~~A~~I~e~A~e~gVPi-----------~e~~~LAr~Ly~~~~ig~~I 63 (93)
T 2vt1_B 16 PAPFISLIETNQCALAVRKYANEVGIPT-----------VRDVKLARKLYKTHTKYSFV 63 (93)
T ss_dssp SSCEEEEEEEHHHHHHHHHHHHHTTCCE-----------EECHHHHHHHHHHCCSSEEC
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHcCCCE-----------EECHHHHHHHHHcCCCCCcc
Confidence 588999999998 1 1234433 78899999775 6777654
No 48
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=24.70 E-value=2.9e+02 Score=25.52 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=35.0
Q ss_pred CcHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhCCCce
Q 021170 198 DDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQV 244 (316)
Q Consensus 198 dd~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V 244 (316)
-.+++..+++. .+-+.|-|++..+=+ .+ -..|+++.++++|.+|
T Consensus 183 ~SL~eYv~rmk-e~Qk~IYYitg~s~~-~~-~~sp~lE~~k~kg~EV 226 (288)
T 1hk7_A 183 TSLTDYVTRMP-EHQKNIYYITGESLK-AV-EKSPFLDALKAKNFEV 226 (288)
T ss_dssp BCHHHHHHHSC-TTCCEEEEEECSSHH-HH-HTCGGGHHHHTTTCCC
T ss_pred ccHHHHHhhCc-CCCceEEEEeCCCHH-HH-hcCHHHHHHHHCCCEE
Confidence 35677788873 556779999988777 54 5678999999999999
No 49
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=24.33 E-value=51 Score=30.07 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=27.5
Q ss_pred CeEEEEecCCCchhhhchHHHHHHHHhCCCce
Q 021170 213 KKAVIFVDNSGADIILGILPFARELLRRGTQV 244 (316)
Q Consensus 213 k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V 244 (316)
-+|++++...+- .+.-.+||+++|.++|.+|
T Consensus 21 MrIl~~~~~~~G-hv~~~~~La~~L~~~GheV 51 (398)
T 3oti_A 21 MRVLFVSSPGIG-HLFPLIQLAWGFRTAGHDV 51 (398)
T ss_dssp CEEEEECCSSHH-HHGGGHHHHHHHHHTTCEE
T ss_pred CEEEEEcCCCcc-hHhHHHHHHHHHHHCCCEE
Confidence 479999988666 7889999999999999988
No 50
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=24.32 E-value=57 Score=27.10 Aligned_cols=48 Identities=23% Similarity=0.289 Sum_probs=32.1
Q ss_pred eEEEEecCCCchhhhchHHHHHHHHhCCCce--------------------eeCCCCCHHHHHHhccCCEEEE
Q 021170 214 KAVIFVDNSGADIILGILPFARELLRRGTQV--------------------IDLTAVSQELAYLASDADLVIL 266 (316)
Q Consensus 214 ~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V--------------------idL~~~S~e~~~~~~~ADLIIs 266 (316)
+|++.+= +|- +|.- ++++|+++|.+| .|+..-.+.+.+++.+.|.||.
T Consensus 2 ~ilItGa-tG~---iG~~-l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~ 69 (219)
T 3dqp_A 2 KIFIVGS-TGR---VGKS-LLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIIN 69 (219)
T ss_dssp EEEEEST-TSH---HHHH-HHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEE
T ss_pred eEEEECC-CCH---HHHH-HHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEE
Confidence 3555543 354 4777 899999888887 2333213467778889998885
No 51
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=24.06 E-value=76 Score=28.41 Aligned_cols=50 Identities=22% Similarity=0.202 Sum_probs=36.7
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCC----------------HHHHHHhccCCEEEE
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVS----------------QELAYLASDADLVIL 266 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S----------------~e~~~~~~~ADLIIs 266 (316)
..+++++++ +|. | +.. +++.|+..|.+|+-.++-. .++.+++.++|+||.
T Consensus 154 ~g~~v~IiG--~G~-i--G~~-~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~ 219 (293)
T 3d4o_A 154 HGANVAVLG--LGR-V--GMS-VARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCIN 219 (293)
T ss_dssp TTCEEEEEC--CSH-H--HHH-HHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEE
T ss_pred CCCEEEEEe--eCH-H--HHH-HHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEE
Confidence 468999999 899 4 888 9999999999883222211 245566788998886
No 52
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=23.05 E-value=1.4e+02 Score=28.32 Aligned_cols=60 Identities=13% Similarity=0.229 Sum_probs=37.4
Q ss_pred cCCCeEEEEecCC--CchhhhchHHHHHHHHhCCCce----------------eeCC-----CCCHHHHH----HhccCC
Q 021170 210 KAWKKAVIFVDNS--GADIILGILPFARELLRRGTQV----------------IDLT-----AVSQELAY----LASDAD 262 (316)
Q Consensus 210 ~~~k~vl~~~DNa--GEdIVfD~LPLi~eL~~~g~~V----------------idL~-----~~S~e~~~----~~~~AD 262 (316)
.+.+++++.+=.| |. -+--.. |.+.|+++|.++ +.++ .+|.+... +.++.|
T Consensus 150 v~~k~i~v~GTD~~VGK-~~ts~~-L~~~l~~~G~~a~~~~tgqtg~~~~~~gi~~Dav~~df~aG~ve~~~~~~~~~~d 227 (349)
T 2obn_A 150 LPCRRVLTVGTDMAIGK-MSTSLE-LHWAAKLRGWRSKFLATGQTGVMLEGDGVALDAVRVDFAAGAVEQMVMRYGKNYD 227 (349)
T ss_dssp CSSEEEEEEESSSSSSH-HHHHHH-HHHHHHHTTCCEEEECCSHHHHHHHSCSCCGGGSBHHHHHHHHHHHHHHHTTTCS
T ss_pred ecceEEEEcCCCccccc-eeHHHH-HHHHHHhcCCcEEEEeccchhhhhhcCCcchhHHHHHHHhhhHHHHHHHhccCCC
Confidence 3577788777654 55 333334 677888899877 2222 22222222 333789
Q ss_pred EEEEcCCCC
Q 021170 263 LVILEGMGR 271 (316)
Q Consensus 263 LIIsKGmGn 271 (316)
+||.||||=
T Consensus 228 ~vlVEGqGg 236 (349)
T 2obn_A 228 ILHIEGQGS 236 (349)
T ss_dssp EEEECCCCC
T ss_pred EEEEeCCCc
Confidence 999999998
No 53
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=22.70 E-value=2.2e+02 Score=25.83 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=34.1
Q ss_pred cHHHHHHHhcccCCCeEEEEecCCCchhhhchHHHHHHHHhCCCceee
Q 021170 199 DLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVID 246 (316)
Q Consensus 199 d~~~~~~~l~~~~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~Vid 246 (316)
.+++..+++. .+-+.|-|++..+=+ .+ -.-|+++.++++|.+|+=
T Consensus 186 sL~eYv~rmk-e~Q~~IyY~t~~s~~-~~-~~sp~lE~~k~kg~EVL~ 230 (260)
T 1usu_A 186 SLTDYVTRMP-EHQKNIYYITGESLK-SV-EKSPFLDALKAKNFEVLF 230 (260)
T ss_dssp EHHHHHHTSC-TTCCEEEEEECSSHH-HH-HTCTTHHHHHHTTCCEEE
T ss_pred eHHHHHHhcc-CCCceEEEEeCCCHH-HH-hcChHHHHHHhCCCeEEE
Confidence 4677788873 456678888877666 43 568899999999999943
No 54
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=22.49 E-value=90 Score=25.67 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=27.9
Q ss_pred EEEEecCCCchhhhchHHHHHHHHhCCCce----------------------eeCCCCCHHHHHHhccCCEEEE
Q 021170 215 AVIFVDNSGADIILGILPFARELLRRGTQV----------------------IDLTAVSQELAYLASDADLVIL 266 (316)
Q Consensus 215 vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V----------------------idL~~~S~e~~~~~~~ADLIIs 266 (316)
|++.+= +|- +|.- ++++|+++|.+| .|+..... +++.++|.||.
T Consensus 3 ilVtGa-tG~---iG~~-l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~---~~~~~~d~vi~ 68 (224)
T 3h2s_A 3 IAVLGA-TGR---AGSA-IVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTE---ADLDSVDAVVD 68 (224)
T ss_dssp EEEETT-TSH---HHHH-HHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCH---HHHTTCSEEEE
T ss_pred EEEEcC-CCH---HHHH-HHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccH---hhcccCCEEEE
Confidence 444443 344 4777 888888888877 23433333 67788897774
No 55
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Probab=21.61 E-value=36 Score=29.31 Aligned_cols=57 Identities=11% Similarity=0.199 Sum_probs=40.4
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCC-ce----e------eCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGT-QV----I------DLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~-~V----i------dL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
++++|..+...-|| .|..|+++.+.+.|+ .| + .+.+..+. .....+.||||.=|.|=
T Consensus 67 ~a~~I~~Y~~~~~E---vdt~~li~~~~~~gk~~v~lP~~~~~~~m~f~~~~~~-~~~~~~iDlvlVP~vAf 134 (189)
T 1sbq_A 67 CIKTIALYEPIKNE---VTFVDFFFEFLKINQIRAVYPKVISDTEIIFIDQETN-TFEPNQIDCFLIPLVGF 134 (189)
T ss_dssp TCCEEECCCCCTTS---CCCCHHHHHHHHHTTCEEEEEEECSSSCEEEECTTCC-EECGGGCCEEEEECSEE
T ss_pred hCCEEEEECCCCCC---CCHHHHHHHHHHcCCCeEEEeEEccCCceEEEEeCCC-CCCcccCCEEEECceEE
Confidence 68899999999999 588999999999999 87 1 12222211 01124679999988753
No 56
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=21.58 E-value=77 Score=26.21 Aligned_cols=49 Identities=35% Similarity=0.415 Sum_probs=33.1
Q ss_pred CeEEEEecCCCchhhhchHHHHHHHHhCCCcee-------------------eCCCCC-HHHHHHhccCCEEEE
Q 021170 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVI-------------------DLTAVS-QELAYLASDADLVIL 266 (316)
Q Consensus 213 k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~Vi-------------------dL~~~S-~e~~~~~~~ADLIIs 266 (316)
++|++.+ =+|- +|.- +++.|+++|.+|+ ..+..+ +.+.++++++|.||.
T Consensus 5 ~~ilItG-atG~---iG~~-l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~ 73 (227)
T 3dhn_A 5 KKIVLIG-ASGF---VGSA-LLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVIS 73 (227)
T ss_dssp CEEEEET-CCHH---HHHH-HHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEE
T ss_pred CEEEEEc-CCch---HHHH-HHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEE
Confidence 4566654 3354 5877 9999999998881 122233 346778889998886
No 57
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=21.33 E-value=1.4e+02 Score=27.04 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=34.7
Q ss_pred CCeEEEEecCCCchhhhchHHHHHHHHhCCC-ceeeCCCC---------------CHHHHHHhccCCEEEE---cCCCC
Q 021170 212 WKKAVIFVDNSGADIILGILPFARELLRRGT-QVIDLTAV---------------SQELAYLASDADLVIL---EGMGR 271 (316)
Q Consensus 212 ~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~-~VidL~~~---------------S~e~~~~~~~ADLIIs---KGmGn 271 (316)
.+++++++ +|. + ++- .+..|.+.|. +|+-.+|- -.++.+++.++|+||. -||..
T Consensus 117 ~k~vlvlG--aGg-~--g~a-ia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~ 189 (277)
T 3don_A 117 DAYILILG--AGG-A--SKG-IANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNG 189 (277)
T ss_dssp GCCEEEEC--CSH-H--HHH-HHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-----
T ss_pred CCEEEEEC--CcH-H--HHH-HHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCC
Confidence 57899999 687 3 666 8999999997 67222221 1345566789999994 57744
No 58
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=20.84 E-value=45 Score=25.38 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=16.6
Q ss_pred CCHHHHHHhCCCCCCeEEE
Q 021170 292 KHPEVAQFLGGRLYDCVFK 310 (316)
Q Consensus 292 KC~~vA~~lG~~~gd~V~~ 310 (316)
+.++||+.+|.+.||+|=.
T Consensus 47 ~~DPva~~~g~k~GdVvkI 65 (84)
T 4ayb_H 47 ASDPVARSINAKPGDIIRI 65 (84)
T ss_dssp SSSHHHHHHTCCTTCEEEE
T ss_pred ccCHhHHhhCCCCCCEEEE
Confidence 7899999999999998743
No 59
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=20.75 E-value=1e+02 Score=26.15 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=33.8
Q ss_pred CCeEEEEecCCCchhhhchHHHHHHHHhCCCceeeCCCCCH-------------HHHHHhccCCEEEE
Q 021170 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVIDLTAVSQ-------------ELAYLASDADLVIL 266 (316)
Q Consensus 212 ~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~VidL~~~S~-------------e~~~~~~~ADLIIs 266 (316)
..++.+++ +|. .+.. +++.|.+.|.+|+-.++-.+ ...+++.++|+||.
T Consensus 28 ~~~I~iiG--~G~---~G~~-la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~ 89 (215)
T 2vns_A 28 APKVGILG--SGD---FARS-LATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFV 89 (215)
T ss_dssp -CCEEEEC--CSH---HHHH-HHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEE
T ss_pred CCEEEEEc--cCH---HHHH-HHHHHHHCCCEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEE
Confidence 35799998 998 5877 99999999988833322211 23355678898875
No 60
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=20.57 E-value=1e+02 Score=25.05 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=16.9
Q ss_pred eEEEEecCCCchhhhchHHHHHHHHhCCCce
Q 021170 214 KAVIFVDNSGADIILGILPFARELLRRGTQV 244 (316)
Q Consensus 214 ~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V 244 (316)
+|++++= +|- +|.- +++.|+++|.+|
T Consensus 2 kvlVtGa-tG~---iG~~-l~~~L~~~g~~V 27 (221)
T 3ew7_A 2 KIGIIGA-TGR---AGSR-ILEEAKNRGHEV 27 (221)
T ss_dssp EEEEETT-TSH---HHHH-HHHHHHHTTCEE
T ss_pred eEEEEcC-Cch---hHHH-HHHHHHhCCCEE
Confidence 3444443 344 3766 888888888877
No 61
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=20.51 E-value=2.1e+02 Score=24.81 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=39.8
Q ss_pred HHHHHHhcccCCCeEEEEecCCC--chh--hhchHHHHHHHHhCCCceeeCCCCCHHHHHHhccCCEEEEcCCCC
Q 021170 201 ETFKVKWSKKAWKKAVIFVDNSG--ADI--ILGILPFARELLRRGTQVIDLTAVSQELAYLASDADLVILEGMGR 271 (316)
Q Consensus 201 ~~~~~~l~~~~~k~vl~~~DNaG--EdI--VfD~LPLi~eL~~~g~~VidL~~~S~e~~~~~~~ADLIIsKGmGn 271 (316)
+.|.+.+ ++.++|+|+ |.+. +|. .+. - +.+.|.+.|.+|..++.. ++..+.+.+||.||.=| ||
T Consensus 22 ~~l~~~~--~~~~~i~iI-~~a~~~~~~~~~~~-~-~~~al~~lG~~~~~v~~~-~d~~~~l~~ad~I~lpG-G~ 89 (229)
T 1fy2_A 22 PLIANQL--NGRRSAVFI-PFAGVTQTWDEYTD-K-TAEVLAPLGVNVTGIHRV-ADPLAAIEKAEIIIVGG-GN 89 (229)
T ss_dssp HHHHHHH--TTCCEEEEE-CTTCCSSCHHHHHH-H-HHHHHGGGTCEEEETTSS-SCHHHHHHHCSEEEECC-SC
T ss_pred HHHHHHh--cCCCeEEEE-ECCCCCCCHHHHHH-H-HHHHHHHCCCEEEEEecc-ccHHHHHhcCCEEEECC-Cc
Confidence 3344444 445777777 4442 211 122 2 456677889888655433 34557788999999999 99
No 62
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=20.27 E-value=14 Score=29.08 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=26.9
Q ss_pred cCCEEEEcCCCC-C-------CCccchhhcccchhhhccCCCHHHHHHhC--CCCCCeE
Q 021170 260 DADLVILEGMGR-G-------IETNLYAQFKCDSLKIGMVKHPEVAQFLG--GRLYDCV 308 (316)
Q Consensus 260 ~ADLIIsKGmGn-~-------~~~ni~~~f~cdllkL~~vKC~~vA~~lG--~~~gd~V 308 (316)
.|-.|++||+|. + -+.++.- +.++++|+.|- +++|+.|
T Consensus 16 ~AP~VvAKG~~~~A~~I~e~A~e~gVPi-----------~e~~~LAr~Ly~~~~ig~~I 63 (98)
T 3c01_E 16 PIPMISVYETNQRALAVRAYAEKVGVPV-----------IVDIKLARSLFKTHRRYDLV 63 (98)
T ss_dssp SSCEEEEEEEHHHHHHHHHHHHHHTCCE-----------EECHHHHHHHHHHCCTTCBC
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHcCCCe-----------ecCHHHHHHHHHhCCCCCcc
Confidence 588999999998 2 1223333 78899999775 6777654
No 63
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=20.12 E-value=70 Score=29.06 Aligned_cols=33 Identities=15% Similarity=0.385 Sum_probs=27.4
Q ss_pred CCCeEEEEecCCCchhhhchHHHHHHHHhCCCce
Q 021170 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQV 244 (316)
Q Consensus 211 ~~k~vl~~~DNaGEdIVfD~LPLi~eL~~~g~~V 244 (316)
..-+|++++...+- .+.-.+||+++|.++|.+|
T Consensus 14 ~~MrIl~~~~~~~g-h~~~~~~La~~L~~~GheV 46 (398)
T 4fzr_A 14 SHMRILVIAGCSEG-FVMPLVPLSWALRAAGHEV 46 (398)
T ss_dssp -CCEEEEECCSSHH-HHGGGHHHHHHHHHTTCEE
T ss_pred CceEEEEEcCCCcc-hHHHHHHHHHHHHHCCCEE
Confidence 34579999887666 6788999999999999988
Done!