BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021171
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 379 bits (972), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/294 (63%), Positives = 220/294 (74%), Gaps = 2/294 (0%)
Query: 23 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
LS +Y CP AL TIK V +AV KE RMGASLLRLHFHDCFVQGCDAS+LLDDTS
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 83 DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
EK A PN NS+RGFEVID IK +++ +C VVSCADILAVAARDSVVALGG +W V
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCP-GVVSCADILAVAARDSVVALGGASWNVL 120
Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFR 202
LGRRDSTTA+ + AN+D+P+PF NL+GLIS+F +G +LV LSG HTIG A+C+AFR
Sbjct: 121 LGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFR 180
Query: 203 NRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQKRGLLISDQ 261
RIYN +NIDP +AK Q CPS GGD+NL+PFD TP FD Y+ +L K+GLL SDQ
Sbjct: 181 TRIYNESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQ 240
Query: 262 ALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNCRRLN 315
LFNG STD V YS N F+ DF N+MIKMGN++ LTG GQIR+NCR+ N
Sbjct: 241 QLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 278 bits (711), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 149/303 (49%), Positives = 191/303 (63%), Gaps = 11/303 (3%)
Query: 23 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
L+ +Y CP A ++ ++ A++ + R+GASL+RLHFHDCFV GCDASILLDDT +I
Sbjct: 3 LNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSI 62
Query: 83 DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
SEKNA PN NS RGF V+D IK L+ C VVSC+D+LA+A+ SV GGP+W V
Sbjct: 63 QSEKNAGPNVNSARGFNVVDNIKTALENACPG-VVSCSDVLALASEASVSLAGGPSWTVL 121
Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFR 202
LGRRDS TAN AN+ IPSP +L+ + F GLN DLVALSG HT G ARC F
Sbjct: 122 LGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFN 181
Query: 203 NRIYNAT---NIDP----DFAKERQRTCPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQKR 254
NR++N + N DP Q+ CP G S + D TP FD YF++L
Sbjct: 182 NRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSND 241
Query: 255 GLLISDQALFN--GGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNCR 312
GLL SDQ LF+ G ST +V +++ N F FA SMI MGNI+ LTG+ G+IR +C+
Sbjct: 242 GLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCK 301
Query: 313 RLN 315
++N
Sbjct: 302 KVN 304
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 277 bits (709), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 156/303 (51%), Positives = 203/303 (66%), Gaps = 11/303 (3%)
Query: 23 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
L+P +Y + CP P + ++ A + R+GASL+RLHFHDCFVQGCD S+LL++T TI
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 83 DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
+SE++A+PN NS+RG +V++ IK ++ C VSCADILA+AA + V GGP W VP
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPD-TVSCADILAIAAEIASVLGGGPGWPVP 120
Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFR 202
LGRRDS TANRTLAN ++P+PF NLT L +SF QGLN DLV LSGGHT G ARCS F
Sbjct: 121 LGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFI 180
Query: 203 NRIYNATNI-DPD------FAKERQRTCPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQKR 254
NR+YN +N +PD + + + CP NL D TP FD +Y+S+LLQ
Sbjct: 181 NRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLN 240
Query: 255 GLLISDQALFN--GGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNCR 312
GLL SDQ LF+ G T +V ++S N F ++F SMIKMGNI VLTG++G+IR C
Sbjct: 241 GLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCN 300
Query: 313 RLN 315
+N
Sbjct: 301 FVN 303
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 271 bits (692), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 158/307 (51%), Positives = 197/307 (64%), Gaps = 21/307 (6%)
Query: 23 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
LSP Y K CP + +++ V A++ E RM ASL+RLHFHDCFV GCDAS+LLD
Sbjct: 2 LSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGA--- 58
Query: 83 DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
DSEK AIPN NS RGFEVID IK ++ C VVSCADIL +AARDSVV GGP W+V
Sbjct: 59 DSEKLAIPNINSARGFEVIDTIKAAVENACP-GVVSCADILTLAARDSVVLSGGPGWRVA 117
Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFR 202
LGR+D AN+ ANN +PSPF L +I+ F LN TD+VALSG HT G A+C+ F
Sbjct: 118 LGRKDGLVANQNSANN-LPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFS 176
Query: 203 NRIYNATNI-DPDFAKER------QRTCPSTGGDSNL-APFD-PTPLTFDGKYFSSLLQK 253
NR++N T +PD E Q CP GG+SN+ AP D T TFD YF +LL+
Sbjct: 177 NRLFNFTGAGNPDATLETSLLSNLQTVCP-LGGNSNITAPLDRSTTDTFDNNYFKNLLEG 235
Query: 254 RGLLISDQALFNG----GSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRS 309
+GLL SDQ LF+ +T LV+ YS + F DF +MI+MGNI+ G G++R+
Sbjct: 236 KGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEVRT 293
Query: 310 NCRRLNN 316
NCR +NN
Sbjct: 294 NCRVINN 300
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 270 bits (689), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 147/304 (48%), Positives = 189/304 (62%), Gaps = 11/304 (3%)
Query: 22 TLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTST 81
+L+ +Y CP A ++ IV+ A + + R+GASL+RLHFHDCFV GCDASILLD++ +
Sbjct: 3 SLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGS 62
Query: 82 IDSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKV 141
I SEKNA PN NS RGF V+D IK L+ C VVSC D+LA+A++ SV GGP+W V
Sbjct: 63 IISEKNAGPNANSARGFNVVDNIKTALENACPG-VVSCTDVLALASQASVSLSGGPSWTV 121
Query: 142 PLGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAF 201
LGRRD+ TAN+ AN+ IPSP L+ + S F GLN DLVALSG HT G A C F
Sbjct: 122 DLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVF 181
Query: 202 RNRIYNAT---NIDP----DFAKERQRTCPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQK 253
NR++N + N DP Q CP G S D TP FD YF++L
Sbjct: 182 SNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSN 241
Query: 254 RGLLISDQALFN--GGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNC 311
GLL SDQ LF+ G +T +V +++ N F FA SMI MGNI+ LTG+ G+IR +C
Sbjct: 242 NGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDC 301
Query: 312 RRLN 315
++ N
Sbjct: 302 KKTN 305
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 263 bits (671), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 143/305 (46%), Positives = 191/305 (62%), Gaps = 13/305 (4%)
Query: 23 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
L+P +YD CP ++ + + + R+ AS+LRLHFHDCFV GCDASILLD+T++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
+EK+A N NS RGF VID +K ++ C R VSCAD+L +AA+ SV GGP+W+VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPR-TVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNE-TDLVALSGGHTIGFARCSAF 201
LGRRDS A LAN ++P+PF L L SFR GLN +DLVALSGGHT G +C +
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSI 181
Query: 202 RNRIYNATNI---DPDFAKERQRT----CPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQK 253
+R+YN +N DP +T CP G S L FD TP FD KY+ +L ++
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 254 RGLLISDQALF---NGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSN 310
+GL+ SDQ LF N T LV++++ + + F F +M +MGNI LTG +GQIR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 311 CRRLN 315
CR +N
Sbjct: 302 CRVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 261 bits (668), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 143/305 (46%), Positives = 190/305 (62%), Gaps = 13/305 (4%)
Query: 23 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
L+P +YD CP ++ + + + R+ AS+LRLHFHDCFV GCDASILLD+T++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
+EK+A N NS RGF VID +K ++ C R VSCAD+L +AA+ SV GGP+W+VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPR-TVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNE-TDLVALSGGHTIGFARCSAF 201
LGRRDS A LAN ++P+PF L L SFR GLN +DLVALSGGHT G +C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 202 RNRIYNATNI---DPDFAKERQRT----CPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQK 253
+R+YN +N DP +T CP G S L FD TP FD KY+ +L ++
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 254 RGLLISDQALF---NGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSN 310
+GL+ SDQ LF N T LV++++ + + F F +M +MGNI LTG +GQIR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 311 CRRLN 315
CR +N
Sbjct: 301 CRVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 261 bits (668), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 143/305 (46%), Positives = 190/305 (62%), Gaps = 13/305 (4%)
Query: 23 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
L+P +YD CP ++ + + + R+ AS+LRLHFHDCFV GCDASILLD+T++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
+EK+A N NS RGF VID +K ++ C R VSCAD+L +AA+ SV GGP+W+VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPR-TVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNE-TDLVALSGGHTIGFARCSAF 201
LGRRDS A LAN ++P+PF L L SFR GLN +DLVALSGGHT G +C
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 202 RNRIYNATNI---DPDFAKERQRT----CPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQK 253
+R+YN +N DP +T CP G S L FD TP FD KY+ +L ++
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 254 RGLLISDQALF---NGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSN 310
+GL+ SDQ LF N T LV++++ + + F F +M +MGNI LTG +GQIR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 311 CRRLN 315
CR +N
Sbjct: 302 CRVVN 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 261 bits (667), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 143/305 (46%), Positives = 190/305 (62%), Gaps = 13/305 (4%)
Query: 23 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
L+P +YD CP ++ + + + R+ AS+LRLHFHDCFV GCDASILLD+T++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
+EK+A N NS RGF VID +K ++ C R VSCAD+L +AA+ SV GGP+W+VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPR-TVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNE-TDLVALSGGHTIGFARCSAF 201
LGRRDS A LAN ++P+PF L L SFR GLN +DLVALSGGHT G +C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 202 RNRIYNATNI---DPDFAKERQRT----CPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQK 253
+R+YN +N DP +T CP G S L FD TP FD KY+ +L ++
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 254 RGLLISDQALF---NGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSN 310
+GL+ SDQ LF N T LV++++ + + F F +M +MGNI LTG +GQIR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 311 CRRLN 315
CR +N
Sbjct: 301 CRVVN 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 261 bits (667), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 143/305 (46%), Positives = 190/305 (62%), Gaps = 13/305 (4%)
Query: 23 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
L+P +YD CP ++ + + + R+ AS+LRLHFHDCFV GCDASILLD+T++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
+EK+A N NS RGF VID +K ++ C R VSCAD+L +AA+ SV GGP+W+VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPR-TVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNE-TDLVALSGGHTIGFARCSAF 201
LGRRDS A LAN ++P+PF L L SFR GLN +DLVALSGGHT G +C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 202 RNRIYNATNI---DPDFAKERQRT----CPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQK 253
+R+YN +N DP +T CP G S L FD TP FD KY+ +L ++
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 254 RGLLISDQALF---NGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSN 310
+GL+ SDQ LF N T LV++++ + + F F +M +MGNI LTG +GQIR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 311 CRRLN 315
CR +N
Sbjct: 301 CRVVN 305
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 261 bits (667), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 143/305 (46%), Positives = 189/305 (61%), Gaps = 13/305 (4%)
Query: 23 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
L+P +YD CP ++ + + + R+ AS+LRLHFHDCFV GCDASILLD+T++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
+EK+A N NS RGF VID +K ++ C R VSCAD+L +AA+ SV GGP+W+VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPR-TVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNE-TDLVALSGGHTIGFARCSAF 201
LGRRDS A LAN ++P PF L L SFR GLN +DLVALSGGHT G +C
Sbjct: 122 LGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 202 RNRIYNATNI---DPDFAKERQRT----CPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQK 253
+R+YN +N DP +T CP G S L FD TP FD KY+ +L ++
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 254 RGLLISDQALF---NGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSN 310
+GL+ SDQ LF N T LV++++ + + F F +M +MGNI LTG +GQIR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 311 CRRLN 315
CR +N
Sbjct: 302 CRVVN 306
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 261 bits (666), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 143/305 (46%), Positives = 189/305 (61%), Gaps = 13/305 (4%)
Query: 23 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
L+P +YD CP ++ + + + R+ AS+LRLHFHDCFV GCDASILLD+T++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
+EK+A N NS RGF VID +K ++ C R VSCAD+L +AA+ SV GGP+W+VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPR-TVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNE-TDLVALSGGHTIGFARCSAF 201
LGRRDS A LAN ++P PF L L SFR GLN +DLVALSGGHT G +C
Sbjct: 122 LGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 202 RNRIYNATNI---DPDFAKERQRT----CPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQK 253
+R+YN +N DP +T CP G S L FD TP FD KY+ +L ++
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 254 RGLLISDQALF---NGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSN 310
+GL+ SDQ LF N T LV++++ + + F F +M +MGNI LTG +GQIR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 311 CRRLN 315
CR +N
Sbjct: 302 CRVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 260 bits (664), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 142/305 (46%), Positives = 190/305 (62%), Gaps = 13/305 (4%)
Query: 23 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
L+P +YD CP ++ + + + R+ AS+LRLHFHDCFV GCDASILLD+T++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
+EK+A N NS RGF VID +K ++ C R VSCAD+L +AA+ SV GGP+W+VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPR-TVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNE-TDLVALSGGHTIGFARCSAF 201
LGRRDS A LAN ++P+PF L L SFR GLN +DLVALSGGH+ G +C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFI 180
Query: 202 RNRIYNATNI---DPDFAKERQRT----CPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQK 253
+R+YN +N DP +T CP G S L FD TP FD KY+ +L ++
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 254 RGLLISDQALF---NGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSN 310
+GL+ SDQ LF N T LV++++ + + F F +M +MGNI LTG +GQIR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 311 CRRLN 315
CR +N
Sbjct: 301 CRVVN 305
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 259 bits (662), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 142/305 (46%), Positives = 189/305 (61%), Gaps = 13/305 (4%)
Query: 23 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
L+P +YD CP ++ + + + R+ AS+LRLHFHDCFV GCDASILLD+T++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
+EK+A N NS RGF VID +K ++ C R VSCAD+L +AA+ SV GGP+W+VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPR-TVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNE-TDLVALSGGHTIGFARCSAF 201
LGRRDS A LAN ++P+PF L L SFR GLN +DLVALSGGHT G +C
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 202 RNRIYNATNI---DPDFAKERQRT----CPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQK 253
+R+YN +N DP +T CP G S L D TP FD KY+ +L ++
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEEQ 241
Query: 254 RGLLISDQALF---NGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSN 310
+GL+ SDQ LF N T LV++++ + + F F +M +MGNI LTG +GQIR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 311 CRRLN 315
CR +N
Sbjct: 302 CRVVN 306
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 259 bits (661), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 142/305 (46%), Positives = 189/305 (61%), Gaps = 13/305 (4%)
Query: 23 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
L+P +YD CP ++ + + + R+ AS+LRLHFHDCFV GCDASILLD+T++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
+EK+A N NS RGF VID +K ++ C R VSCAD+L +AA+ SV GGP+W+VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPR-TVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNE-TDLVALSGGHTIGFARCSAF 201
LGRRDS A LAN ++P+PF L L SFR GLN +DLVAL GGHT G +C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFI 180
Query: 202 RNRIYNATNI---DPDFAKERQRT----CPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQK 253
+R+YN +N DP +T CP G S L FD TP FD KY+ +L ++
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 254 RGLLISDQALF---NGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSN 310
+GL+ SDQ LF N T LV++++ + + F F +M +MGNI LTG +GQIR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 311 CRRLN 315
CR +N
Sbjct: 301 CRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 258 bits (659), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 142/305 (46%), Positives = 189/305 (61%), Gaps = 13/305 (4%)
Query: 23 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
L+P +YD CP ++ + + + R+ AS+LRLHF DCFV GCDASILLD+T++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSF 62
Query: 83 DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
+EK+A N NS RGF VID +K ++ C R VSCAD+L +AA+ SV GGP+W+VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPR-TVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNE-TDLVALSGGHTIGFARCSAF 201
LGRRDS A LAN ++P+PF L L SFR GLN +DLVALSGGHT G +C
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 202 RNRIYNATNI---DPDFAKERQRT----CPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQK 253
+R+YN +N DP +T CP G S L FD TP FD KY+ +L ++
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 254 RGLLISDQALF---NGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSN 310
+GL+ SDQ LF N T LV++++ + + F F +M +MGNI LTG +GQIR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 311 CRRLN 315
CR +N
Sbjct: 302 CRVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 141/305 (46%), Positives = 188/305 (61%), Gaps = 13/305 (4%)
Query: 23 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
L+P +YD CP ++ + + + R+ AS+L LHF DCFV GCDASILLD+T++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSF 61
Query: 83 DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
+EK+A N NS RGF VID +K ++ C R VSCAD+L +AA+ SV GGP+W+VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPR-TVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNE-TDLVALSGGHTIGFARCSAF 201
LGRRDS A LAN ++P+PF L L SFR GLN +DLVALSGGHT G +C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 202 RNRIYNATNI---DPDFAKERQRT----CPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQK 253
+R+YN +N DP +T CP G S L FD TP FD KY+ +L ++
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 254 RGLLISDQALF---NGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSN 310
+GL+ SDQ LF N T LV++++ + + F F +M +MGNI LTG +GQIR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 311 CRRLN 315
CR +N
Sbjct: 301 CRVVN 305
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/305 (43%), Positives = 182/305 (59%), Gaps = 21/305 (6%)
Query: 27 YYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEK 86
+Y+ CP A +++ V AA + L+R+HFHDCFV+GCDAS+LLD T+ +EK
Sbjct: 6 FYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEK 65
Query: 87 NAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPLGRR 146
+AIPNN S+RGFEVI K ++ C + VSCADILA AARDS G T++VP GRR
Sbjct: 66 DAIPNNPSLRGFEVITAAKSAVEAACPQ-TVSCADILAFAARDSANLAGNITYQVPSGRR 124
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIY 206
D T + + AN IPSP N T LI+SF + L ++V LSG H+IG A CS+F NR+Y
Sbjct: 125 DGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTNRLY 184
Query: 207 N---ATNID----PDFAKERQRTCPSTGGDSNLAPFDP--------TPLTFDGKYFSSLL 251
N + ID P +A + TCP +N F P TP D Y++ +
Sbjct: 185 NFNSGSGIDPTLSPSYAALLRNTCP-----ANSTRFTPITVSLDIITPSVLDNMYYTGVQ 239
Query: 252 QKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNC 311
GLL SDQAL + VK ++N A+++ FA +M+KMG I VLTG +G+IR+NC
Sbjct: 240 LTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNC 299
Query: 312 RRLNN 316
+N+
Sbjct: 300 SVVNS 304
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 231 bits (589), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 180/289 (62%), Gaps = 4/289 (1%)
Query: 27 YYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEK 86
+Y + CP A ++ V+ AV K+ + A LLRLHFHDCFVQGCDAS+LLD ++T E+
Sbjct: 13 FYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGEQ 72
Query: 87 NAIPN-NNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPLGR 145
A PN F+ ++ I+ L++ C+ VVSC+DILA+AARDSVV GGP ++VPLGR
Sbjct: 73 QAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYRVPLGR 132
Query: 146 RDSTT-ANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNR 204
RDS + A+ +D+P P N+ L++ R GL+ TDLV +SGGHTIG A CS+F +R
Sbjct: 133 RDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCSSFEDR 192
Query: 205 IYNATN--IDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQA 262
++ + I P F +RTCP+ G D TP FD KY+ L+ + GL +SDQ
Sbjct: 193 LFPRPDPTISPTFLSRLKRTCPAKGTDRRTVLDVRTPNVFDNKYYIDLVNREGLFVSDQD 252
Query: 263 LFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNC 311
LF T +V+ ++ + + F F S+ KMG + V T ++G++R NC
Sbjct: 253 LFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNC 301
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 27/212 (12%)
Query: 100 VIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANR-----T 154
++L+K DK V+ AD+ +A+ ++ GGP + GR D T +
Sbjct: 73 ALNLLKPIKDKYSG---VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGR 129
Query: 155 LANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPD 214
L + PSP +L + F R GLN+ ++VALSG HT+G R+R + P+
Sbjct: 130 LPDAGPPSPAQHLRDV---FYRMGLNDKEIVALSGAHTLG-------RSRPDRSGWGKPE 179
Query: 215 FAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRG----LLISDQALFNGGSTD 270
K + + GG S A + L FD YF + ++R +L +D ALF S
Sbjct: 180 -TKYTKDGPGAPGGQSWTAQW----LKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFK 234
Query: 271 GLVKTYSLNFKAFSADFANSMIKMGNINVLTG 302
+ Y+ + +AF D+A + K+ N+ G
Sbjct: 235 VYAEKYAADPEAFFKDYAEAHAKLSNLGAKFG 266
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 109/282 (38%), Gaps = 55/282 (19%)
Query: 34 EALPTIKRIVEAAVEK----------EGRMGASLLRLHFHDC--FVQGCDASILLDDTST 81
++ PT+ + AVEK E R +LRL +H F +G T
Sbjct: 14 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFG-TIK 72
Query: 82 IDSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKV 141
+E NN +++ +K E P++S AD +A +V GGP
Sbjct: 73 HPAELAHSANNGLDIAVRLLEPLKAEF------PILSYADFYQLAGVVAVEVTGGPEVPF 126
Query: 142 PLGRRDSTTANRTLANNDIPSPFLNLTGLISSF-RRQGLNETDLVALSGGHTIGFARCSA 200
GR D +P L F + GL + D+VALSGGHTIG A
Sbjct: 127 HPGREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH--- 180
Query: 201 FRNRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLL--QKRGL-- 256
KER P+ PL FD YF+ LL +K GL
Sbjct: 181 ----------------KERS---------GFEGPWTSNPLIFDNSYFTELLSGEKEGLLQ 215
Query: 257 LISDQALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNIN 298
L SD+AL + LV Y+ + AF AD+A + K+ +
Sbjct: 216 LPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 109/282 (38%), Gaps = 55/282 (19%)
Query: 34 EALPTIKRIVEAAVEK----------EGRMGASLLRLHFHDC--FVQGCDASILLDDTST 81
++ PT+ + AVEK E R +LRL +H F +G T
Sbjct: 2 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFG-TIK 60
Query: 82 IDSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKV 141
+E NN +++ +K E P++S AD +A +V GGP
Sbjct: 61 HPAELAHSANNGLDIAVRLLEPLKAEF------PILSYADFYQLAGVVAVEVTGGPEVPF 114
Query: 142 PLGRRDSTTANRTLANNDIPSPFLNLTGLISSF-RRQGLNETDLVALSGGHTIGFARCSA 200
GR D +P L F + GL + D+VALSGGHTIG A
Sbjct: 115 HPGREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH--- 168
Query: 201 FRNRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLL--QKRGL-- 256
KER P+ PL FD YF+ LL +K GL
Sbjct: 169 ----------------KERS---------GFEGPWTSNPLIFDNSYFTELLSGEKEGLLQ 203
Query: 257 LISDQALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNIN 298
L SD+AL + LV Y+ + AF AD+A + K+ +
Sbjct: 204 LPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 109/282 (38%), Gaps = 55/282 (19%)
Query: 34 EALPTIKRIVEAAVEK----------EGRMGASLLRLHFHDC--FVQGCDASILLDDTST 81
++ PT+ + AVEK E R +LRL +H F +G T
Sbjct: 14 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFG-TIK 72
Query: 82 IDSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKV 141
+E NN +++ +K E P++S AD +A +V GGP
Sbjct: 73 HPAELAHSANNGLDIAVRLLEPLKAEF------PILSYADFYQLAGVVAVEVTGGPEVPF 126
Query: 142 PLGRRDSTTANRTLANNDIPSPFLNLTGLISSF-RRQGLNETDLVALSGGHTIGFARCSA 200
GR D +P L F + GL + D+VALSGGHTIG A
Sbjct: 127 HPGREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH--- 180
Query: 201 FRNRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLL--QKRGL-- 256
KER P+ PL FD YF+ LL +K GL
Sbjct: 181 ----------------KERS---------GFEGPWTSNPLIFDNSYFTELLSGEKEGLLQ 215
Query: 257 LISDQALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNIN 298
L SD+AL + LV Y+ + AF AD+A + K+ +
Sbjct: 216 LPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 87/204 (42%), Gaps = 37/204 (18%)
Query: 101 IDLIKKELDKVCKR-PVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANRTLANND 159
+D+ + L+ + ++ P+VS AD +A +V GGP GR D
Sbjct: 73 LDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPP---PEGR 129
Query: 160 IPSPFLNLTGLISSF-RRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKE 218
+P L F + GL++ D+VALSGGHTIG A KE
Sbjct: 130 LPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAH-------------------KE 170
Query: 219 RQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLL--QKRGL--LISDQALFNGGSTDGLVK 274
R P+ PL FD YF+ LL +K GL L SD+AL LV+
Sbjct: 171 RS---------GFEGPWTSNPLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVE 221
Query: 275 TYSLNFKAFSADFANSMIKMGNIN 298
Y+ + F AD+A + +K+ +
Sbjct: 222 KYAADEDVFFADYAEAHLKLSELG 245
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 108/284 (38%), Gaps = 59/284 (20%)
Query: 34 EALPTIKRIVEAAVEK----------EGRMGASLLRLHFHDC--FVQGCDASILLDDTST 81
++ PT+ + AVEK E R +LRL +H F +G T
Sbjct: 14 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFG-TIK 72
Query: 82 IDSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKV 141
+E NN +++ +K E P++S AD +A +V GGP
Sbjct: 73 HPAELAHSANNGLDIAVRLLEPLKAEF------PILSYADFYQLAGVVAVEVTGGPEVPF 126
Query: 142 PLGRRDSTTANRTLANNDIPSPFLNLTGLISSF-RRQGLNETDLVALSGGHTIGFAR--C 198
GR D +P L F + GL + D+VALSGGHTIG A
Sbjct: 127 HPGREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKEA 183
Query: 199 SAFRNRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLL--QKRGL 256
S F P+ PL FD YF+ LL +K GL
Sbjct: 184 SGFEG------------------------------PWTSNPLIFDNSYFTELLSGEKEGL 213
Query: 257 --LISDQALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNIN 298
L SD+AL + LV Y+ + AF AD+A + K+ +
Sbjct: 214 LQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 109/282 (38%), Gaps = 55/282 (19%)
Query: 34 EALPTIKRIVEAAVEK----------EGRMGASLLRLHFHDC--FVQGCDASILLDDTST 81
++ PT+ + AVEK E R +L+L +H F +G T
Sbjct: 2 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLKLAWHSAGTFDKGTKTGGPFG-TIK 60
Query: 82 IDSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKV 141
+E NN +++ +K E P++S AD +A +V GGP
Sbjct: 61 HPAELAHSANNGLDIAVRLLEPLKAEF------PILSYADFYQLAGVVAVEVTGGPEVPF 114
Query: 142 PLGRRDSTTANRTLANNDIPSPFLNLTGLISSF-RRQGLNETDLVALSGGHTIGFARCSA 200
GR D +P L F + GL + D+VALSGGHTIG A
Sbjct: 115 HPGREDKP---EPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH--- 168
Query: 201 FRNRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLL--QKRGL-- 256
KER P+ PL FD YF+ LL +K GL
Sbjct: 169 ----------------KERS---------GFEGPWTSNPLIFDNSYFTELLSGEKEGLLQ 203
Query: 257 LISDQALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNIN 298
L SD+AL + LV Y+ + AF AD+A + K+ +
Sbjct: 204 LPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 108/282 (38%), Gaps = 55/282 (19%)
Query: 34 EALPTIKRIVEAAVEK----------EGRMGASLLRLHFHDC--FVQGCDASILLDDTST 81
++ PT+ + AVEK E R +LRL H F +G T
Sbjct: 14 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAAHSAGTFDKGTKTGGPFG-TIK 72
Query: 82 IDSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKV 141
+E NN +++ +K E P++S AD +A +V GGP
Sbjct: 73 HPAELAHSANNGLDIAVRLLEPLKAEF------PILSYADFYQLAGVVAVEVTGGPEVPF 126
Query: 142 PLGRRDSTTANRTLANNDIPSPFLNLTGLISSF-RRQGLNETDLVALSGGHTIGFARCSA 200
GR D +P L F + GL + D+VALSGGHTIG A
Sbjct: 127 HPGREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH--- 180
Query: 201 FRNRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLL--QKRGL-- 256
KER P+ PL FD YF+ LL +K GL
Sbjct: 181 ----------------KERS---------GFEGPWTSNPLIFDNSYFTELLSGEKEGLLQ 215
Query: 257 LISDQALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNIN 298
L SD+AL + LV Y+ + AF AD+A + K+ +
Sbjct: 216 LPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 22/161 (13%)
Query: 43 VEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVR------ 96
+E + ++ +G SL+RL +H+ C +K+ PN+ S+R
Sbjct: 15 IEDMISEKLELGPSLIRLAWHEAASYDC-------------FKKDGSPNSASMRFKPECL 61
Query: 97 --GFEVIDLIKKELDKVCKR-PVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANR 153
G + +D+ +K L+ + K+ P +S AD+ +AA ++ +GGPT GR D+ +
Sbjct: 62 YAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSV 121
Query: 154 TLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG 194
+ +P + + FRR G N+ + VAL G HT G
Sbjct: 122 CGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCG 162
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 22/161 (13%)
Query: 43 VEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVR------ 96
+E + ++ +G SL+RL +H+ C +K+ PN+ S+R
Sbjct: 16 IEDMISEKLELGPSLIRLAWHEAASYDC-------------FKKDGSPNSASMRFKPECL 62
Query: 97 --GFEVIDLIKKELDKVCKR-PVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANR 153
G + +D+ +K L+ + K+ P +S AD+ +AA ++ +GGPT GR D+ +
Sbjct: 63 YAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSV 122
Query: 154 TLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG 194
+ +P + + FRR G N+ + VAL G HT G
Sbjct: 123 CGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCG 163
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 22/161 (13%)
Query: 43 VEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVR------ 96
+E + ++ +G SL+RL +H+ C +K+ PN+ S+R
Sbjct: 16 IEDMISEKLELGPSLIRLAWHEAASYDC-------------FKKDGSPNSASMRFKPECL 62
Query: 97 --GFEVIDLIKKELDKVCKR-PVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANR 153
G + +D+ +K L+ + K+ P +S AD+ +AA ++ +GGPT GR D+ +
Sbjct: 63 YAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSV 122
Query: 154 TLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG 194
+ +P + + FRR G N+ + VAL G HT G
Sbjct: 123 CGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCG 163
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 77/189 (40%), Gaps = 36/189 (19%)
Query: 115 PVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANRTLANNDIPSPFLNLTGLISSF 174
P++S AD +A +V GGP GR D +P L F
Sbjct: 100 PILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVF 156
Query: 175 -RRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGGDSNLA 233
+ GL + D+VALSGGHTIG A KER
Sbjct: 157 GKAMGLTDQDIVALSGGHTIGAAH-------------------KERS---------GFEG 188
Query: 234 PFDPTPLTFDGKYFSSLL--QKRGL--LISDQALFNGGSTDGLVKTYSLNFKAFSADFAN 289
P+ PL FD YF+ LL +K GL L SD+AL + LV Y+ + AF AD+A
Sbjct: 189 PWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 248
Query: 290 SMIKMGNIN 298
+ K+ +
Sbjct: 249 AHQKLSELG 257
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 77/189 (40%), Gaps = 36/189 (19%)
Query: 115 PVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANRTLANNDIPSPFLNLTGLISSF 174
P++S AD +A +V GGP GR D +P L F
Sbjct: 88 PILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKP---EPPPEGRLPDATKGSDHLRDVF 144
Query: 175 -RRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGGDSNLA 233
+ GL + D+VALSGGHTIG A KER
Sbjct: 145 GKAMGLTDQDIVALSGGHTIGAAH-------------------KERS---------GFEG 176
Query: 234 PFDPTPLTFDGKYFSSLL--QKRGL--LISDQALFNGGSTDGLVKTYSLNFKAFSADFAN 289
P+ PL FD YF+ LL +K GL L SD+AL + LV Y+ + AF AD+A
Sbjct: 177 PWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 236
Query: 290 SMIKMGNIN 298
+ K+ +
Sbjct: 237 AHQKLSELG 245
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 77/189 (40%), Gaps = 36/189 (19%)
Query: 115 PVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANRTLANNDIPSPFLNLTGLISSF 174
P++S AD +A +V GGP GR D +P L F
Sbjct: 100 PILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVF 156
Query: 175 -RRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGGDSNLA 233
+ GL + D+VALSGGHTIG A KER
Sbjct: 157 GKAMGLTDQDIVALSGGHTIGAAH-------------------KERS---------GFEG 188
Query: 234 PFDPTPLTFDGKYFSSLL--QKRGL--LISDQALFNGGSTDGLVKTYSLNFKAFSADFAN 289
P+ PL FD YF+ LL +K GL L SD+AL + LV Y+ + AF AD+A
Sbjct: 189 PWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 248
Query: 290 SMIKMGNIN 298
+ K+ +
Sbjct: 249 AHQKLSELG 257
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 77/189 (40%), Gaps = 36/189 (19%)
Query: 115 PVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANRTLANNDIPSPFLNLTGLISSF 174
P++S AD +A +V GGP GR D +P L F
Sbjct: 88 PILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKP---EPPPEGRLPDATKGSDHLRDVF 144
Query: 175 -RRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGGDSNLA 233
+ GL + D+VALSGGHTIG A KER
Sbjct: 145 GKAMGLTDQDIVALSGGHTIGAAH-------------------KERS---------GFEG 176
Query: 234 PFDPTPLTFDGKYFSSLL--QKRGL--LISDQALFNGGSTDGLVKTYSLNFKAFSADFAN 289
P+ PL FD YF+ LL +K GL L SD+AL + LV Y+ + AF AD+A
Sbjct: 177 PWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 236
Query: 290 SMIKMGNIN 298
+ K+ +
Sbjct: 237 AHQKLSELG 245
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 77/189 (40%), Gaps = 36/189 (19%)
Query: 115 PVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANRTLANNDIPSPFLNLTGLISSF 174
P++S AD +A +V GGP GR D +P L F
Sbjct: 100 PILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVF 156
Query: 175 -RRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGGDSNLA 233
+ GL + D+VALSGGHTIG A KER
Sbjct: 157 GKAMGLTDQDIVALSGGHTIGAAH-------------------KERS---------GFEG 188
Query: 234 PFDPTPLTFDGKYFSSLL--QKRGL--LISDQALFNGGSTDGLVKTYSLNFKAFSADFAN 289
P+ PL FD YF+ LL +K GL L SD+AL + LV Y+ + AF AD+A
Sbjct: 189 PWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 248
Query: 290 SMIKMGNIN 298
+ K+ +
Sbjct: 249 AHQKLSELG 257
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 12/108 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 80 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 131
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG 194
D T + T N +P + + + F+R +N+ ++VALSG HT+G
Sbjct: 132 D-TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALSGAHTLG 178
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 40 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 96
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 97 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 150
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G H +G + S + A N+ F E+ +
Sbjct: 151 VRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV---FTNEKYLNLLNE- 206
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 207 -DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDF 259
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 260 SKAFEKL 266
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 80 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 131
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG 194
D T + T N +P + + + F+R +N+ ++VAL G HT+G
Sbjct: 132 D-TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLG 178
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 80 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 131
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG 194
D T + T N +P + + + F+R +N+ ++VAL G HT+G
Sbjct: 132 D-TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLG 178
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 80 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 131
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG 194
D T + T N +P + + + F+R +N+ ++VAL G HT+G
Sbjct: 132 D-TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLG 178
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 80 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 131
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG 194
D T + T N +P + + + F+R +N+ ++VAL G HT+G
Sbjct: 132 D-TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLG 178
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 100/251 (39%), Gaps = 26/251 (10%)
Query: 50 EGRMGASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKE 107
E + G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 32 EKKCGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 91
Query: 108 LDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFL 165
P +S D+ ++ +V + GP K+P GR D T + T N +P
Sbjct: 92 F------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADK 142
Query: 166 NLTGLISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTC 223
+ + + F+R +N+ ++VAL G H +G + S + A N+ F E
Sbjct: 143 DADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPFGAANNV---FTNEFYLNL 199
Query: 224 PSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAF 283
+ D L D +D K +L LI D + +VK Y+ + F
Sbjct: 200 LNE--DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKF 251
Query: 284 SADFANSMIKM 294
DF+ + K+
Sbjct: 252 FKDFSKAFEKL 262
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 97/245 (39%), Gaps = 24/245 (9%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 40 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 96
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 97 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 150
Query: 170 LISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGGD 229
+ + F+R +N+ ++VAL G H +G + +N Y + F E + D
Sbjct: 151 VRTFFQRLNMNDREVVALMGAHALG---KTHLKNSGYEGGGANNVFTNEFYLNLLNE--D 205
Query: 230 SNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADFAN 289
L D +D K +L LI D + +VK Y+ + F DF+
Sbjct: 206 WKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDFSK 259
Query: 290 SMIKM 294
+ K+
Sbjct: 260 AFEKL 264
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 98/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL FH + + + T E N N GF+ ++ I KE
Sbjct: 45 GPVLVRLAFHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 101
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 102 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 155
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G H +G + S + A N+ F E +
Sbjct: 156 VRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV---FTNEFYLNLLNE- 211
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 212 -DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDF 264
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 265 SKAFEKL 271
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 97/245 (39%), Gaps = 24/245 (9%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 41 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 97
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 98 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 151
Query: 170 LISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGGD 229
+ + F+R +N+ ++VAL G H +G + +N Y + F E + D
Sbjct: 152 VRTFFQRLNMNDREVVALMGAHALG---KTHLKNSGYEGGGANNVFTNEFYLNLLNE--D 206
Query: 230 SNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADFAN 289
L D +D K +L LI D + +VK Y+ + F DF+
Sbjct: 207 WKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDFSK 260
Query: 290 SMIKM 294
+ K+
Sbjct: 261 AFEKL 265
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 97/245 (39%), Gaps = 24/245 (9%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 46 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 102
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 103 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 156
Query: 170 LISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGGD 229
+ + F+R +N+ ++VAL G H +G + +N Y + F E + D
Sbjct: 157 VRTFFQRLNMNDREVVALMGAHALG---KTHLKNSGYEGGGANNVFTNEFYLNLLNE--D 211
Query: 230 SNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADFAN 289
L D +D K +L LI D + +VK Y+ + F DF+
Sbjct: 212 WKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDFSK 265
Query: 290 SMIKM 294
+ K+
Sbjct: 266 AFEKL 270
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 40 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 96
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 97 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 150
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G H +G + S + A N+ F E +
Sbjct: 151 VRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV---FTNEYYLNLLNE- 206
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 207 -DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDF 259
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 260 SKAFEKL 266
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 40 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 96
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 97 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 150
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G H +G + S + A N+ F E +
Sbjct: 151 VRTFFQRLNMNDREVVALKGAHALGKTHLKNSGYEGPWGAANNV---FTNEFYLNLLNE- 206
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 207 -DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDF 259
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 260 SKAFEKL 266
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 40 GPELVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 96
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 97 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 150
Query: 170 LISSFRRQGLNETDLVALSGGHTIG 194
+ + F+R +N+ ++VAL G H +G
Sbjct: 151 VRTFFQRLNMNDREVVALMGAHALG 175
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 46 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 102
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 103 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 156
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G H +G + S + A N+ F E +
Sbjct: 157 VRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV---FTNEFYLNLLNE- 212
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 213 -DWKLEKNDANNEQWDSKSGYMMLPTEYSLIQDPKYLS------IVKEYANDQDKFFKDF 265
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 266 SKAFEKL 272
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 43 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 99
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 100 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 153
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G H +G + S + A N+ F E +
Sbjct: 154 VRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV---FTNEGYLNLLNE- 209
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 210 -DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDF 262
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 263 SKAFEKL 269
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 43 GDDLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 99
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 100 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 153
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G H +G + S + A N+ F E +
Sbjct: 154 VRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV---FTNEFYLNLLNE- 209
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 210 -DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDF 262
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 263 SKAFEKL 269
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 43 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 99
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 100 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDADY 153
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G H +G + S + A N+ F E +
Sbjct: 154 VRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV---FTNEFYLNLLNE- 209
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 210 -DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDF 262
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 263 SKAFEKL 269
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 25/210 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 77 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 128
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNR 204
D T + T N +P + + + F+R +N+ ++VAL G H +G + S +
Sbjct: 129 D-TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGP 187
Query: 205 IYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALF 264
A N+ F E + D L D +D K +L LI D
Sbjct: 188 WGAANNV---FTNEFYLNLLNE--DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL 242
Query: 265 NGGSTDGLVKTYSLNFKAFSADFANSMIKM 294
+ +VK Y+ + F DF+ + K+
Sbjct: 243 S------IVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 25/210 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 77 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 128
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNR 204
D T + T N +P + + + F+R +N+ ++VAL G H +G + S +
Sbjct: 129 D-TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGP 187
Query: 205 IYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALF 264
A N+ F E + D L D +D K +L LI D
Sbjct: 188 WGAANNV---FTNEFYLNLLNE--DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL 242
Query: 265 NGGSTDGLVKTYSLNFKAFSADFANSMIKM 294
+ +VK Y+ + F DF+ + K+
Sbjct: 243 S------IVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 25/210 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 80 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 131
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNR 204
D T + T N +P + + + F+R +N+ ++VAL G H +G + S +
Sbjct: 132 D-TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGP 190
Query: 205 IYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALF 264
A N+ F E + D L D +D K +L LI D
Sbjct: 191 WGAANNV---FTNEFYLNLLNE--DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL 245
Query: 265 NGGSTDGLVKTYSLNFKAFSADFANSMIKM 294
+ +VK Y+ + F DF+ + K+
Sbjct: 246 S------IVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 25/210 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 80 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 131
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNR 204
D T + T N +P + + + F+R +N+ ++VAL G H +G + S +
Sbjct: 132 D-TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGP 190
Query: 205 IYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALF 264
A N+ F E + D L D +D K +L LI D
Sbjct: 191 WGAANNV---FTNEFYLNLLNE--DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL 245
Query: 265 NGGSTDGLVKTYSLNFKAFSADFANSMIKM 294
+ +VK Y+ + F DF+ + K+
Sbjct: 246 S------IVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 45 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 101
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 102 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 155
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G H +G + S + A N+ F E +
Sbjct: 156 VRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV---FTNEFYLNLLNE- 211
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 212 -DWKLEKNDANNEQWDSKSGYMMLPTNYSLIQDPKYLS------IVKEYANDQDKFFKDF 264
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 265 SKAFEKL 271
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 25/210 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 77 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 128
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNR 204
D T + T N +P + + + F+R +N+ ++VAL G H +G + S +
Sbjct: 129 D-TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGP 187
Query: 205 IYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALF 264
A N+ F E + D L D +D K +L LI D
Sbjct: 188 WGAANNV---FTNEFYLNLLNE--DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL 242
Query: 265 NGGSTDGLVKTYSLNFKAFSADFANSMIKM 294
+ +VK Y+ + F DF+ + K+
Sbjct: 243 S------IVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 25/210 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 77 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 128
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNR 204
D T + T N +P + + + F+R +N+ ++VAL G H +G + S +
Sbjct: 129 D-TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGP 187
Query: 205 IYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALF 264
A N+ F E + D L D +D K +L LI D
Sbjct: 188 YGAANNV---FTNEFYLNLLNE--DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL 242
Query: 265 NGGSTDGLVKTYSLNFKAFSADFANSMIKM 294
+ +VK Y+ + F DF+ + K+
Sbjct: 243 S------IVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 25/210 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 80 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 131
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNR 204
D T + T N +P + + + F+R +N+ ++VAL G H +G + S +
Sbjct: 132 D-TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGP 190
Query: 205 IYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALF 264
A N+ F E + D L D +D K +L LI D
Sbjct: 191 WGAANNV---FTNEFYLNLLNE--DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL 245
Query: 265 NGGSTDGLVKTYSLNFKAFSADFANSMIKM 294
+ +VK Y+ + F DF+ + K+
Sbjct: 246 S------IVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 25/210 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 79 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 130
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNR 204
D T + T N +P + + + F+R +N+ ++VAL G H +G + S +
Sbjct: 131 D-TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGP 189
Query: 205 IYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALF 264
A N+ F E + D L D +D K +L LI D
Sbjct: 190 WGAANNV---FTNEFYLNLLNE--DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL 244
Query: 265 NGGSTDGLVKTYSLNFKAFSADFANSMIKM 294
+ +VK Y+ + F DF+ + K+
Sbjct: 245 S------IVKEYANDQDKFFKDFSKAFEKL 268
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 45 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 101
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 102 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDADY 155
Query: 170 LISSFRRQGLNETDLVALSGGHTIG 194
+ + F+R +N+ ++VAL G H +G
Sbjct: 156 VRTFFQRLNMNDREVVALMGAHALG 180
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 43 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 99
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 100 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 153
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G H +G + S + A N+ F E +
Sbjct: 154 VRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV---FTNEFYLNLLNE- 209
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 210 -DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDF 262
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 263 SKAFEKL 269
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 77 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 128
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG 194
D T + T N +P + + + F+R +N+ ++VAL G H +G
Sbjct: 129 D-TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG 175
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 43 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 99
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 100 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDADY 153
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G H +G + S + A N+ F E +
Sbjct: 154 VRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNV---FTNEFYLNLLNE- 209
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 210 -DWKLEKNDANNEQWDSKSGYMMLPTXYSLIQDPKYLS------IVKEYANDQDKFFKDF 262
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 263 SKAFEKL 269
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 25/210 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 82 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 133
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNR 204
D T + T N +P + + + F+R +N+ ++VAL G H +G + S +
Sbjct: 134 D-TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGP 192
Query: 205 IYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALF 264
A N+ F E + D L D +D K +L LI D
Sbjct: 193 FGAANNV---FTNEFYLNLLNE--DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL 247
Query: 265 NGGSTDGLVKTYSLNFKAFSADFANSMIKM 294
+ +VK Y+ + F DF+ + K+
Sbjct: 248 S------IVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 43 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 99
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 100 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRAGRVD-TPEDTTPDNGRLPDADKDADY 153
Query: 170 LISSFRRQGLNETDLVALSGGHTIG 194
+ + F+R +N+ ++VAL G H +G
Sbjct: 154 VRTFFQRLNMNDREVVALMGAHALG 178
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 45 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 101
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 102 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDADY 155
Query: 170 LISSFRRQGLNETDLVALSGGHTIG 194
+ + F+R +N+ ++VAL G H +G
Sbjct: 156 VRTFFQRLNMNDREVVALMGAHALG 180
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 43 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 99
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 100 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDADY 153
Query: 170 LISSFRRQGLNETDLVALSGGHTIG 194
+ + F+R +N+ ++VAL G H +G
Sbjct: 154 VRTFFQRLNMNDREVVALMGAHALG 178
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 43 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 99
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 100 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDADY 153
Query: 170 LISSFRRQGLNETDLVALSGGHTIG 194
+ + F+R +N+ ++VAL G H +G
Sbjct: 154 VRTFFQRLNMNDREVVALMGAHALG 178
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 46 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 102
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 103 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 156
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G H +G + S + A N+ F E +
Sbjct: 157 VRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV---FTNEFYLNLLNE- 212
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 213 -DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDF 265
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 266 SKAFEKL 272
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 25/210 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 82 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 133
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNR 204
D T + T N +P + + + F+R +N+ ++VAL G H +G + S +
Sbjct: 134 D-TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGP 192
Query: 205 IYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALF 264
A N+ F E + D L D +D K +L LI D
Sbjct: 193 WGAANNV---FTNEFYLNLLNE--DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL 247
Query: 265 NGGSTDGLVKTYSLNFKAFSADFANSMIKM 294
+ +VK Y+ + F DF+ + K+
Sbjct: 248 S------IVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 46 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 102
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 103 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 156
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G H +G + S + A N+ F E +
Sbjct: 157 VRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV---FTNEFYLNLLNE- 212
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 213 -DWKLEKNDANNEQWDSKSGYMMLPTAYSLIQDPKYLS------IVKEYANDQDKFFKDF 265
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 266 SKAFEKL 272
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 25/210 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 82 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 133
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNR 204
D T + T N +P + + + F+R +N+ ++VAL G H +G + S +
Sbjct: 134 D-TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGP 192
Query: 205 IYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALF 264
A N+ F E + D L D +D K +L LI D
Sbjct: 193 WGAANNV---FTNEFYLNLLNE--DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL 247
Query: 265 NGGSTDGLVKTYSLNFKAFSADFANSMIKM 294
+ +VK Y+ + F DF+ + K+
Sbjct: 248 S------IVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 42 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 98
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 99 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDADY 152
Query: 170 LISSFRRQGLNETDLVALSGGHTIG 194
+ + F+R +N+ ++VAL G H +G
Sbjct: 153 VRTFFQRLNMNDREVVALMGAHALG 177
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 45 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 101
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 102 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 155
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G H +G + S + A N+ F E +
Sbjct: 156 VRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV---FTNEFYLNLLNE- 211
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 212 -DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDF 264
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 265 SKAFEKL 271
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 40 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 96
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 97 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 150
Query: 170 LISSFRRQGLNETDLVALSGGHTIG 194
+ + F+R +N+ ++VAL G H +G
Sbjct: 151 VRTFFQRLNMNDREVVALMGAHALG 175
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 45 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPWNAGLQNGFKFLEPIHKEF--- 101
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 102 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDADY 155
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G H +G + S + A N+ F E +
Sbjct: 156 VRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV---FTNEFYLNLLNE- 211
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 212 -DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDF 264
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 265 SKAFEKL 271
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 77 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 128
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG 194
D T + T N +P + + + F+R +N+ ++VAL G H +G
Sbjct: 129 D-TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG 175
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 25/210 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 82 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 133
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNR 204
D T + T N +P + + + F+R +N+ ++VAL G H +G + S +
Sbjct: 134 D-TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGP 192
Query: 205 IYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALF 264
A N+ F E + D L D +D K +L LI D
Sbjct: 193 WGAANNV---FTNEFYLNLLNE--DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL 247
Query: 265 NGGSTDGLVKTYSLNFKAFSADFANSMIKM 294
+ +VK Y+ + F DF+ + K+
Sbjct: 248 S------IVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 43 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 99
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 100 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 153
Query: 170 LISSFRRQGLNETDLVALSGGHTIG 194
+ + F+R +N+ ++VAL G H +G
Sbjct: 154 VRTFFQRLNMNDREVVALMGAHALG 178
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 43 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 99
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 100 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 153
Query: 170 LISSFRRQGLNETDLVALSGGHTIG 194
+ + F+R +N+ ++VAL G H +G
Sbjct: 154 VRTFFQRLNMNDREVVALMGAHALG 178
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 80 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 131
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG 194
D T + T N +P + + + F+R +N+ ++VAL G H +G
Sbjct: 132 D-TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG 178
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 41 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 97
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 98 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 151
Query: 170 LISSFRRQGLNETDLVALSGGHTIG 194
+ + F+R +N+ ++VAL G H +G
Sbjct: 152 VRTFFQRLNMNDREVVALMGAHALG 176
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 40 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 96
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 97 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 150
Query: 170 LISSFRRQGLNETDLVALSGGHTIG 194
+ + F+R +N+ ++VAL G H +G
Sbjct: 151 VRTFFQRLNMNDREVVALMGAHALG 175
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 45 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 101
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 102 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 155
Query: 170 LISSFRRQGLNETDLVALSGGHTIG 194
+ + F+R +N+ ++VAL G H +G
Sbjct: 156 VRTFFQRLNMNDREVVALMGAHALG 180
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 43 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 99
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 100 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDYDKDAGY 153
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G H +G + S + A N+ F E +
Sbjct: 154 VRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV---FTNEFYLNLLNE- 209
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 210 -DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDF 262
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 263 SKAFEKL 269
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 45 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 101
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 102 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRAGRVD-TPEDTTPDNGRLPDADKDAGY 155
Query: 170 LISSFRRQGLNETDLVALSGGHTIG 194
+ + F+R +N+ ++VAL G H +G
Sbjct: 156 VRTFFQRLNMNDREVVALMGAHALG 180
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 45 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 101
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 102 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 155
Query: 170 LISSFRRQGLNETDLVALSGGHTIG 194
+ + F+R +N+ ++VAL G H +G
Sbjct: 156 VRTFFQRLNMNDREVVALMGAHALG 180
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 82 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 133
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG 194
D T + T N +P + + + F+R +N+ ++VAL G H +G
Sbjct: 134 D-TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG 180
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 43 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 99
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 100 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDMDKDAGY 153
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G H +G + S + A N+ F E +
Sbjct: 154 VRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV---FTNEFYLNLLNE- 209
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 210 -DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDF 262
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 263 SKAFEKL 269
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 97/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 45 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 101
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V GP K+P GR D T + T N +P +
Sbjct: 102 ---PWISSGDLFSLGGVTAVQEWQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDADY 155
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G H +G + S + A N+ F E +
Sbjct: 156 VRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV---FTNEFYLNLLNE- 211
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 212 -DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDF 264
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 265 SKAFEKL 271
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 92/240 (38%), Gaps = 63/240 (26%)
Query: 32 CPEALPTIKRIVEAAVEKE-GRMGASLLRLHFHDCFV----------QGCDASILLDDTS 80
C +P + + E + E G+ ++RL FHD G D S+LL T
Sbjct: 14 CCAFIPLAQDLQETIFQNECGQDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTV 73
Query: 81 TIDSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVAL----GG 136
E N NN + D + + + K +S AD++ A VAL G
Sbjct: 74 ----EPNFSANNG------IDDSVNNLIPFMQKHNTISAADLVQFAG---AVALSNCPGA 120
Query: 137 PTWKVPLGRRDSTTANRTLANND--IPSPFLNLTGLISSFRRQG-LNETDLVALSGGHTI 193
P + GR N+T+A D IP P ++T ++ F G ++V+L H++
Sbjct: 121 PRLEFLAGR-----PNKTIAAVDGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSV 175
Query: 194 GFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQK 253
AR + I + APFD TP TFD + F +L K
Sbjct: 176 --ARANKVDQTI-------------------------DAAPFDSTPFTFDTQVFLEVLLK 208
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 91/240 (37%), Gaps = 63/240 (26%)
Query: 32 CPEALPTIKRIVEAAVEKE-GRMGASLLRLHFHDCFV----------QGCDASILLDDTS 80
C +P + + E + E G ++RL FHD G D S+LL T
Sbjct: 14 CCAFIPLAQDLQETIFQNECGEDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTV 73
Query: 81 TIDSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVAL----GG 136
E N NN + D + + + K +S AD++ A VAL G
Sbjct: 74 ----EPNFSANNG------IDDSVNNLIPFMQKHNTISAADLVQFAG---AVALSNCPGA 120
Query: 137 PTWKVPLGRRDSTTANRTLANND--IPSPFLNLTGLISSFRRQG-LNETDLVALSGGHTI 193
P + GR N+T+A D IP P ++T ++ F G ++V+L H++
Sbjct: 121 PRLEFLAGR-----PNKTIAAVDGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSV 175
Query: 194 GFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQK 253
AR + I + APFD TP TFD + F +L K
Sbjct: 176 --ARANKVDQTI-------------------------DAAPFDSTPFTFDTQVFLEVLLK 208
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 97/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 40 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 96
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 97 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 150
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G +G + S + A N+ F E +
Sbjct: 151 VRTFFQRLNMNDREVVALMGAGALGKTHLKNSGYEGPWGAANNV---FTNEFYLNLLNE- 206
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 207 -DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDF 259
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 260 SKAFEKL 266
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 97/247 (39%), Gaps = 26/247 (10%)
Query: 54 GASLLRLHFH--DCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKV 111
G L+RL +H + + + T E N N GF+ ++ I KE
Sbjct: 41 GPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF--- 97
Query: 112 CKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRRDSTTANRTLANNDIPSPFLNLTG 169
P +S D+ ++ +V + GP K+P GR D T + T N +P +
Sbjct: 98 ---PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRVD-TPEDTTPDNGRLPDADKDAGY 151
Query: 170 LISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNRIYNATNIDPDFAKERQRTCPSTG 227
+ + F+R +N+ ++VAL G +G + S + A N+ F E +
Sbjct: 152 VRTFFQRLNMNDREVVALMGAGALGKTHLKNSGYEGPWGAANNV---FTNEFYLNLLNE- 207
Query: 228 GDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADF 287
D L D +D K +L LI D + +VK Y+ + F DF
Sbjct: 208 -DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLS------IVKEYANDQDKFFKDF 260
Query: 288 ANSMIKM 294
+ + K+
Sbjct: 261 SKAFEKL 267
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 90/240 (37%), Gaps = 63/240 (26%)
Query: 32 CPEALPTIKRIVEAAVEKE-GRMGASLLRLHFHDCFV----------QGCDASILLDDTS 80
C +P + + E + E G ++RL FHD G D S+LL T
Sbjct: 14 CCAFIPLAQDLQETIFQNECGEDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTV 73
Query: 81 TIDSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVAL----GG 136
E N NN + D + + + K +S AD++ A VAL G
Sbjct: 74 ----EPNFSANNG------IDDSVNNLIPFMQKHNTISAADLVQFAG---AVALSNCPGA 120
Query: 137 PTWKVPLGRRDSTTANRTLANND--IPSPFLNLTGLISSFRRQG-LNETDLVALSGGHTI 193
P + GR N+T+A D IP P ++T ++ F G ++V+L H++
Sbjct: 121 PRLEFLAGR-----PNKTIAAVDGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSV 175
Query: 194 GFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQK 253
AR I + APFD TP TFD + F +L K
Sbjct: 176 --ARADKVDQTI-------------------------DAAPFDSTPFTFDTQVFLEVLLK 208
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 25/210 (11%)
Query: 90 PNNNSVR-GFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPL--GRR 146
P+N ++ GF+ ++ I KE P +S D+ ++ +V + GP K+P GR
Sbjct: 78 PSNAGLQNGFKFLEPIHKEF------PWISSGDLFSLGGVTAVQEMQGP--KIPWRCGRV 129
Query: 147 DSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIG--FARCSAFRNR 204
D T + T N +P + + + F+R +N+ ++VAL G +G + S +
Sbjct: 130 D-TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLKNSGYEGP 188
Query: 205 IYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALF 264
A N+ F E + D L D +D K +L LI D
Sbjct: 189 WGAANNV---FTNEFYLNLLNE--DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL 243
Query: 265 NGGSTDGLVKTYSLNFKAFSADFANSMIKM 294
+ +VK Y+ + F DF+ + K+
Sbjct: 244 S------IVKEYANDQDKFFKDFSKAFEKL 267
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 75/199 (37%), Gaps = 51/199 (25%)
Query: 58 LRLHFHDCFV-------QGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDK 110
LRL FHD G D SI+ DT + NA ID I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANA-----------GIDEIVSAQKP 90
Query: 111 VCKRPVVSCADILAVAARDSVVALGGPTWKVP--LGRRDSTTANRTLANNDIPSPFLNLT 168
+ +S D + A V G ++P LGR D+ A+ ++ +P PF ++
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAAS---PDHLVPEPFDSVD 146
Query: 169 GLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGG 228
+++ G + ++V+L H+I A +DP + P T
Sbjct: 147 SILARMGDAGFSPVEVVSLLASHSIA------------AADKVDP--------SIPGT-- 184
Query: 229 DSNLAPFDPTPLTFDGKYF 247
PFD TP FD ++F
Sbjct: 185 -----PFDSTPGVFDSQFF 198
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 74/199 (37%), Gaps = 51/199 (25%)
Query: 58 LRLHFHDCFV-------QGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDK 110
LRL FHD G D SI+ DT + NA ID I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANA-----------GIDEIVSAQKP 90
Query: 111 VCKRPVVSCADILAVAARDSVVALGGPTWKVP--LGRRDSTTANRTLANNDIPSPFLNLT 168
+ +S D + A V G ++P LGR D+ A+ ++ +P PF ++
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPGGV-RIPFFLGRPDAVAAS---PDHLVPEPFDSVD 146
Query: 169 GLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGG 228
+++ G + ++V L H+I A +DP + P T
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIA------------AADGVDP--------SIPGT-- 184
Query: 229 DSNLAPFDPTPLTFDGKYF 247
PFD TP FD ++F
Sbjct: 185 -----PFDSTPEVFDSQFF 198
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 74/199 (37%), Gaps = 51/199 (25%)
Query: 58 LRLHFHDCFV-------QGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDK 110
LRL FHD G D SI+ DT + NA ID I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANA-----------GIDEIVSAQKP 90
Query: 111 VCKRPVVSCADILAVAARDSVVALGGPTWKVP--LGRRDSTTANRTLANNDIPSPFLNLT 168
+ +S D + A V G ++P LGR D+ A+ ++ +P PF ++
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPGGV-RIPFFLGRPDAVAAS---PDHLVPGPFDSVD 146
Query: 169 GLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGG 228
+++ G + ++V L H+I A +DP + P T
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIA------------AADKVDP--------SIPGT-- 184
Query: 229 DSNLAPFDPTPLTFDGKYF 247
PFD TP FD ++F
Sbjct: 185 -----PFDSTPEVFDSQFF 198
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 74/199 (37%), Gaps = 51/199 (25%)
Query: 58 LRLHFHDCFV-------QGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDK 110
LRL FHD G D SI+ DT + NA ID I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANA-----------GIDEIVSAQKP 90
Query: 111 VCKRPVVSCADILAVAARDSVVALGGPTWKVP--LGRRDSTTANRTLANNDIPSPFLNLT 168
+ +S D + A V G ++P LGR D+ A+ ++ +P PF ++
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPGGV-RIPFFLGRPDAVAAS---PDHLVPGPFDSVD 146
Query: 169 GLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGG 228
+++ G + ++V L H+I A +DP + P T
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIA------------AADKVDP--------SIPGT-- 184
Query: 229 DSNLAPFDPTPLTFDGKYF 247
PFD TP FD ++F
Sbjct: 185 -----PFDSTPEVFDSQFF 198
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 74/199 (37%), Gaps = 51/199 (25%)
Query: 58 LRLHFHDCFV-------QGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDK 110
LRL FHD G D SI+ DT + NA ID I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANA-----------GIDEIVSAQKP 90
Query: 111 VCKRPVVSCADILAVAARDSVVALGGPTWKVP--LGRRDSTTANRTLANNDIPSPFLNLT 168
+ +S D + A V G ++P LGR D+ A+ ++ +P PF ++
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAAS---PDHLVPEPFDSVD 146
Query: 169 GLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGG 228
+++ G + ++V L H+I A +DP + P T
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIA------------AADKVDP--------SIPGT-- 184
Query: 229 DSNLAPFDPTPLTFDGKYF 247
PFD TP FD ++F
Sbjct: 185 -----PFDSTPQVFDSQFF 198
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 74/199 (37%), Gaps = 51/199 (25%)
Query: 58 LRLHFHDCFV-------QGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDK 110
LRL FHD G D SI+ DT + NA ID I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANA-----------GIDEIVSAQKP 90
Query: 111 VCKRPVVSCADILAVAARDSVVALGGPTWKVP--LGRRDSTTANRTLANNDIPSPFLNLT 168
+ +S D + A V G ++P LGR D+ A+ ++ +P PF ++
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPGGV-RIPFFLGRPDAVAAS---PDHLVPEPFDSVD 146
Query: 169 GLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGG 228
+++ G + ++V L H+I A +DP + P T
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIA------------AADKVDP--------SIPGT-- 184
Query: 229 DSNLAPFDPTPLTFDGKYF 247
PFD TP FD ++F
Sbjct: 185 -----PFDSTPGVFDSQFF 198
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 74/199 (37%), Gaps = 51/199 (25%)
Query: 58 LRLHFHDCFV-------QGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDK 110
LRL FHD G D SI+ DT + NA ID I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANA-----------GIDEIVSAQKP 90
Query: 111 VCKRPVVSCADILAVAARDSVVALGGPTWKVP--LGRRDSTTANRTLANNDIPSPFLNLT 168
+ +S D + A V G ++P LGR D+ A+ ++ +P PF ++
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPGGV-RIPFFLGRPDAVAAS---PDHLVPGPFDSVD 146
Query: 169 GLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGG 228
+++ G + ++V L H+I A +DP + P T
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIA------------AADGVDP--------SIPGT-- 184
Query: 229 DSNLAPFDPTPLTFDGKYF 247
PFD TP FD ++F
Sbjct: 185 -----PFDSTPEVFDSQFF 198
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 74/199 (37%), Gaps = 51/199 (25%)
Query: 58 LRLHFHDCFV-------QGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDK 110
LRL FHD G D SI+ DT + NA ID I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANA-----------GIDEIVSAQKP 90
Query: 111 VCKRPVVSCADILAVAARDSVVALGGPTWKVP--LGRRDSTTANRTLANNDIPSPFLNLT 168
+ +S D + A V G ++P LGR D+ A+ ++ +P PF ++
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAAS---PDHLVPEPFDSVD 146
Query: 169 GLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGG 228
+++ G + ++V L H+I A +DP + P T
Sbjct: 147 SILARMGDAGFSPVEVVYLLASHSIA------------AADKVDP--------SIPGT-- 184
Query: 229 DSNLAPFDPTPLTFDGKYF 247
PFD TP FD ++F
Sbjct: 185 -----PFDSTPGVFDSQFF 198
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 74/199 (37%), Gaps = 51/199 (25%)
Query: 58 LRLHFHDCFV-------QGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDK 110
LRL FHD G D SI+ DT + NA ID I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANA-----------GIDEIVSAQKP 90
Query: 111 VCKRPVVSCADILAVAARDSVVALGGPTWKVP--LGRRDSTTANRTLANNDIPSPFLNLT 168
+ +S D + A V G ++P LGR D+ A+ ++ +P PF ++
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAAS---PDHLVPEPFDSVD 146
Query: 169 GLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGG 228
+++ G + ++V L H+I A +DP + P T
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIA------------AAAKVDP--------SIPGT-- 184
Query: 229 DSNLAPFDPTPLTFDGKYF 247
PFD TP FD ++F
Sbjct: 185 -----PFDSTPGVFDSQFF 198
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 74/199 (37%), Gaps = 51/199 (25%)
Query: 58 LRLHFHDCFV-------QGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDK 110
LRL FHD G D SI+ DT + NA ID I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANA-----------GIDEIVSAQKP 90
Query: 111 VCKRPVVSCADILAVAARDSVVALGGPTWKVP--LGRRDSTTANRTLANNDIPSPFLNLT 168
+ +S D + A V G ++P LGR D+ A+ ++ +P PF ++
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAAS---PDHLVPEPFDSVD 146
Query: 169 GLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGG 228
+++ G + ++V L H+I A +DP + P T
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIA------------AADKVDP--------SIPGT-- 184
Query: 229 DSNLAPFDPTPLTFDGKYF 247
PFD TP FD ++F
Sbjct: 185 -----PFDSTPEVFDSQFF 198
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 74/199 (37%), Gaps = 51/199 (25%)
Query: 58 LRLHFHDCFV-------QGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDK 110
LRL FHD G D SI+ DT + NA ID I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANA-----------GIDEIVSAQKP 90
Query: 111 VCKRPVVSCADILAVAARDSVVALGGPTWKVP--LGRRDSTTANRTLANNDIPSPFLNLT 168
+ +S D + A V G ++P LGR D+ A+ ++ +P PF ++
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAAS---PDHLVPEPFDSVD 146
Query: 169 GLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGG 228
+++ G + ++V L H+I A +DP + P T
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIA------------AADKVDP--------SIPGT-- 184
Query: 229 DSNLAPFDPTPLTFDGKYF 247
PFD TP FD ++F
Sbjct: 185 -----PFDSTPEVFDSQFF 198
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 74/199 (37%), Gaps = 51/199 (25%)
Query: 58 LRLHFHDCFV-------QGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDK 110
LRL FHD G D SI+ DT + NA ID I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANA-----------GIDEIVSAQKP 90
Query: 111 VCKRPVVSCADILAVAARDSVVALGGPTWKVP--LGRRDSTTANRTLANNDIPSPFLNLT 168
+ +S D + A V G ++P LGR D+ A+ ++ +P PF ++
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAAS---PDHLVPEPFDSVD 146
Query: 169 GLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGG 228
+++ G + ++V L H+I A +DP + P T
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIA------------AADKVDP--------SIPGT-- 184
Query: 229 DSNLAPFDPTPLTFDGKYF 247
PFD TP FD ++F
Sbjct: 185 -----PFDSTPGVFDSQFF 198
>pdb|3RRW|A Chain A, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
pdb|3RRW|B Chain B, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
Length = 268
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 39 IKRIVEAAVEKEGRMGASLLRLHFHDCFVQ-------GCDASILLDDTSTIDSEKNAIPN 91
IK ++ ++ + + SLL+L +D G + SI SE + N
Sbjct: 17 IKILLSTTIKAKPELVPSLLKLALNDAXTYDKATKSGGANGSI------RFSSELSRAEN 70
Query: 92 NNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSV 131
G +I+ +KKE+D + K +S ADI+ +A + +V
Sbjct: 71 EGLSDGLSLIEEVKKEIDSISKGGPISYADIIQLAGQSAV 110
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 73/199 (36%), Gaps = 51/199 (25%)
Query: 58 LRLHFHDCFV-------QGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDK 110
LRL FHD G D SI+ DT + NA ID I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANA-----------GIDEIVSAQKP 90
Query: 111 VCKRPVVSCADILAVAARDSVVALGGPTWKVP--LGRRDSTTANRTLANNDIPSPFLNLT 168
+ +S D + A V G ++P LGR D+ A+ ++ +P F ++
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPGGV-RIPFFLGRPDAVAAS---PDHLVPEGFDSVD 146
Query: 169 GLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGG 228
+++ G + ++V L H+I A +DP + P T
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIA------------AADKVDP--------SIPGT-- 184
Query: 229 DSNLAPFDPTPLTFDGKYF 247
PFD TP FD ++F
Sbjct: 185 -----PFDSTPEVFDSQFF 198
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 73/199 (36%), Gaps = 51/199 (25%)
Query: 58 LRLHFHDCFV-------QGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDK 110
LRL FHD G D SI+ DT + NA ID I
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANA-----------GIDEIVSAQKP 90
Query: 111 VCKRPVVSCADILAVAARDSVVALGGPTWKVP--LGRRDSTTANRTLANNDIPSPFLNLT 168
+ +S D + A V G ++P LGR D+ A+ ++ +P P ++
Sbjct: 91 FVAKHNISAGDFIQFAGAVGVSNCPG-GVRIPFFLGRPDAVAAS---PDHLVPEPQDSVD 146
Query: 169 GLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGG 228
+++ G + ++V L H+I A +DP + P T
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIA------------AADKVDP--------SIPGT-- 184
Query: 229 DSNLAPFDPTPLTFDGKYF 247
PFD TP FD ++F
Sbjct: 185 -----PFDSTPGVFDSQFF 198
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 158 NDIPSPFLNLTGLISSFRRQGLNETDLVAL-SGGHTIG 194
N P P + + +F R G+N+T+ VAL +GGH G
Sbjct: 258 NGTPDPAASAKDIREAFGRMGMNDTETVALIAGGHAFG 295
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 19/127 (14%)
Query: 17 ATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASI-- 74
ATA ST+SP Y +++ E + EG +G+ R H V G DA +
Sbjct: 207 ATALSTVSPSYAEEIL---------TAEFGMGLEGVIGS---RAHVLHGIVNGIDADVWN 254
Query: 75 -----LLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARD 129
L+ D + + KN N +V ID L V R L A D
Sbjct: 255 PATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVD 314
Query: 130 SVVALGG 136
+V+LGG
Sbjct: 315 EIVSLGG 321
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 49/127 (38%), Gaps = 19/127 (14%)
Query: 17 ATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASI-- 74
ATA ST+SP Y +++ E EG +G+ R H V G DA +
Sbjct: 207 ATALSTVSPSYAEEIL---------TAEFGXGLEGVIGS---RAHVLHGIVNGIDADVWN 254
Query: 75 -----LLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARD 129
L+ D + + KN N +V ID L V R L A D
Sbjct: 255 PATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLXAEAVD 314
Query: 130 SVVALGG 136
+V+LGG
Sbjct: 315 EIVSLGG 321
>pdb|1QPA|A Chain A, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
pdb|1QPA|B Chain B, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
Length = 345
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 33/141 (23%)
Query: 117 VSCADILAVAARDSVV-ALGGPTWKVPLGRRDSTTANRTLANNDIPSPFLNLTGLISS-F 174
V+ D +A A V G P + LGR ++T A + +P PF + +++
Sbjct: 104 VTPGDFIAFAGAVGVSNCPGAPQMQFFLGRPEATQA---APDGLVPEPFHTIDQVLARML 160
Query: 175 RRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGGDSNLAP 234
G +E + V L H+I A ++DP + P
Sbjct: 161 DAGGFDEIETVXLLSAHSIA------------AANDVDPTISG---------------LP 193
Query: 235 FDPTPLTFDGKYFSSLLQKRG 255
FD TP FD ++F Q RG
Sbjct: 194 FDSTPGQFDSQFFVE-TQLRG 213
>pdb|1UB2|A Chain A, Crystal Structure Of Catalase-Peroxidase From
Synechococcus Pcc 7942
Length = 720
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 161 PSPFLNLTGLISSFRRQGLNETDLVALS-GGHTIG 194
P P + +F R +N+ + VAL+ GGHT+G
Sbjct: 231 PDPLKTAHDVRVTFARMAMNDEETVALTAGGHTVG 265
>pdb|1SJ2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
pdb|1SJ2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
Length = 743
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 158 NDIPSPFLNLTGLISSFRRQGLNETDLVAL-SGGHTIG 194
N P P + +FRR +N+ + AL GGHT G
Sbjct: 239 NGNPDPMAAAVDIRETFRRMAMNDVETAALIVGGHTFG 276
>pdb|2CCD|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCD|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 158 NDIPSPFLNLTGLISSFRRQGLNETDLVAL-SGGHTIG 194
N P P + +FRR +N+ + AL GGHT G
Sbjct: 236 NGNPDPMAAAVDIRETFRRMAMNDVETAALIVGGHTFG 273
>pdb|2CCA|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCA|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 158 NDIPSPFLNLTGLISSFRRQGLNETDLVAL-SGGHTIG 194
N P P + +FRR +N+ + AL GGHT G
Sbjct: 236 NGNPDPMAAAVDIRETFRRMAMNDVETAALIVGGHTFG 273
>pdb|1A6S|A Chain A, M-Domain From Gag Polyprotein Of Rous Sarcoma Virus, Nmr,
20 Structures
Length = 87
Score = 28.1 bits (61), Expect = 7.4, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 249 SLLQKRGLLISDQALFNGGSTDGLVKTYS 277
SLLQK GLL+S L++ GS D + S
Sbjct: 31 SLLQKEGLLMSPSDLYSPGSWDPITAALS 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,264,514
Number of Sequences: 62578
Number of extensions: 383174
Number of successful extensions: 1091
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 900
Number of HSP's gapped (non-prelim): 129
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)