Citrus Sinensis ID: 021172

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MMESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATGHTKSIDGWDSSYFYDEPSGVSSVVDPIEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADQYLQLPQLESPSLPILKRPSSISLTSENSAEEEQNRVNNINNNCNNANKKVTDWRALDKFVASQLSQEDRCEGESSFGAHDDNSDMALLLLQEW
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEccccccccccHHcccccccccEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccccccEEEEEccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHHHccccccccEEEHEccccccccccHHHccccccccccEEEEccccccccccccccHHHccccEEEcccccHEcccccEEEEEEEEEEEEccccccccccEEEEEEEcccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
mmesmesyvppgfrfhptdeELVGYYLRKKVAsqkidldvirdidlyriepwdlqeRCRIGyeeqnewyffshkdkkyptgtrtnratMAGFWkatgrdkavydkskliGMRKTLVFykgrapngqktdWIMHEYrlesdengppqeegWVVCRAFKkratghtksidgwdssyfydepsgvssvvdpieyvsrqpqsLLAQNLMCKQEIEAENLSFLQAADQylqlpqlespslpilkrpssisltsensaeEEQNRVNNINnncnnankkvtDWRALDKFVASqlsqedrcegessfgahddnsDMALLLLQEW
Flexible Loop (DISEMBL)
mmesmesyvppgfrfhpTDEELVGYYLRKKvasqkidldvirdidlyriepwdlqERCRIGYEeqnewyffshkdkkyptgtrtnratmagfwkatgrdkavydkskligMRKTlvfykgrapngqkTDWIMHEYRLesdengppqeeGWVVCRAFKKRatghtksidgwdssYFYDEPSGVSSVVDPIEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADQYLQLPQLESPSLPILKRPSSISLTSENSAEEEQNRVNNINNNCNNANKKVTDWRALDKFVASQLSQEDRCEGEssfgahddnsDMALLLLQEW
Low Complexity Region (SEG)
MMESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATGHTKSIDGWDSSYFYDEPSGVSSVVDPIEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADqylqlpqlespslpilKRPSSISLTSENSAEEEQnrvnninnncnnanKKVTDWRALDKFVASQLSQEDRCEGESSFGAHDDNSDMALLLLQEW
Disordered region (IsUnstruct)
***********GFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRL***********GWVVCRAFKKRATGHTKSIDGWDSSYFYDEPSGVSSVVDPIEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADQYLQ*********************************************KVTDWRALDKFV*********************************
Disordered Region (DISOPRED)
******S***PGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE*******QE*GWVVCRAF**********************************************************************************************************************DWRALDKFVA*************************LLLLQEW
Disordered Region (DISEMBL)
*********PPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATGHTKSIDGWDSSYFYDEPSGVSSVVDPIEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADQYLQLPQLESPSLPILKRPSS*************NRVNNINNNCNNANKKVTDWRALDKFVAS*************FGAHDDNSDMALLLLQEW
Disordered Region (DISPRO)
********VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRA******************************************NLMCKQE*EAENLSFLQAADQYLQLPQL******************************************VTDWRALDKFVASQL********************MA*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATGHTKSIDGWDSSYFYDEPSGVSSVVDPIEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADQYLQLPQLESPSLPILKRPSSISLTSENSxxxxxxxxxxxxxxxxxxxxxVTDWRALDKFVASQLSQEDRCEGESSFGAHDDNSDMALLLLQEW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
Q9FWX2	395	NAC domain-containing pro	no	no	0.917	0.734	0.542	4e-90
Q84WP6	365	NAC domain-containing pro	no	no	0.816	0.706	0.498	2e-72
Q9SV87	341	Protein BEARSKIN1 OS=Arab	no	no	0.927	0.859	0.449	6e-67
Q9M274	334	NAC domain-containing pro	no	no	0.794	0.751	0.483	4e-66
Q9LPI7	358	NAC domain-containing pro	no	no	0.917	0.810	0.440	6e-66
Q9C878	305	Protein BEARSKIN1 OS=Arab	no	no	0.496	0.514	0.696	5e-65
Q5Z6B6	276	NAC domain-containing pro	no	no	0.477	0.547	0.758	1e-64
Q9MA17	371	Protein SOMBRERO OS=Arabi	no	no	0.474	0.404	0.736	2e-64
Q9FLJ2	336	NAC domain-containing pro	no	no	0.477	0.449	0.563	2e-48
O49255	268	NAC transcription factor	no	no	0.484	0.570	0.512	7e-47

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score =  331 bits (849), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 190/350 (54%), Positives = 226/350 (64%), Gaps = 60/350 (17%)

Query: 7   SYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQN 66
           S+VPPGFRFHPTDEELV YYLRKKVAS++I++D I+DIDLY+IEPWDLQE C+IG+EEQ+
Sbjct: 5   SHVPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGHEEQS 64

Query: 67  EWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQ 126
           +WYFFSHKDKKYPTGTRTNRAT AGFWKATGRDKA+Y +  LIGMRKTLVFYKGRAPNGQ
Sbjct: 65  DWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRAPNGQ 124

Query: 127 KTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATGHTKSIDGWDS--SYFYD------- 177
           K+DWIMHEYRLE+DENG PQEEGWVVCR FKKR     + +  +DS  S++YD       
Sbjct: 125 KSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRLAA-VRRMGDYDSSPSHWYDDQLSFMA 183

Query: 178 ---EPSGVSSVV------DPIEYVSRQPQSLLAQ-------NLMCKQEIEAENLSFLQ-- 219
              E +G   ++         E+    P  L A        NL CKQE+E      +Q  
Sbjct: 184 SELETNGQRRILPNHHQQQQHEHQQHMPYGLNASAYALNNPNLQCKQELELHYNHLVQRN 243

Query: 220 -----AADQYLQLPQLESP----------SLPI----LKRPSS--ISLTSENSAEEEQNR 258
                +   +LQLPQLESP          SLP     +   SS   +L   N A EEQ  
Sbjct: 244 HLLDESHLSFLQLPQLESPKIQQDNSNCNSLPYGTSNIDNNSSHNANLQQSNIAHEEQ-- 301

Query: 259 VNNINNN-----CNNANK----KVTDWRALDKFVASQLSQEDRCEGESSF 299
           +N  N N      N+ N+    +VTDWR LDKFVASQLS E+     +S 
Sbjct: 302 LNQGNQNFSSLYMNSGNEQVMDQVTDWRVLDKFVASQLSNEEAATASASI 351

Transcription factor probably involved in xylem formation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2

 Score =  273 bits (697), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 151/303 (49%), Positives = 192/303 (63%), Gaps = 45/303 (14%)

Query: 6   ESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQ 65
           +S VPPGFRFHPT+EEL+ YYLRKKV S +IDLDVIRD+DL ++EPWD+QE C+IG   Q
Sbjct: 13  QSQVPPGFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWDIQEMCKIGTTPQ 72

Query: 66  NEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNG 125
           N+WYFFSHKDKKYPTGTRTNRAT AGFWKATGRDK +Y   + IGMRKTLVFYKGRAP+G
Sbjct: 73  NDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYSNGRRIGMRKTLVFYKGRAPHG 132

Query: 126 QKTDWIMHEYRLESDENGP---------------PQEEGWVVCRAFKKRATGHT--KSID 168
           QK+DWIMHEYRL+ +   P                Q+EGWVVCR FKK+    T    + 
Sbjct: 133 QKSDWIMHEYRLDDNIISPEDVTVHEVVSIIGEASQDEGWVVCRIFKKKNLHKTLNSPVG 192

Query: 169 GWDSSYFYDEPSGVSSVV---DPIEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADQYL 225
           G   S   D P   SS +   D ++      Q L      CK+E+   NL      D ++
Sbjct: 193 GASLSGGGDTPKTTSSQIFNEDTLD------QFLELMGRSCKEEL---NL------DPFM 237

Query: 226 QLPQLESPSLPILKRPSSISLTSENSAEEEQNRVNNINNNCNNANKKVTDWRALDKFVAS 285
           +LP LES        P+S ++ + + +  + N   +++N  + +   VT W ALD+ VAS
Sbjct: 238 KLPNLES--------PNSQAINNCHVSSPDTNHNIHVSNVVDTS--FVTSWAALDRLVAS 287

Query: 286 QLS 288
           QL+
Sbjct: 288 QLN 290

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score =  254 bits (649), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 138/307 (44%), Positives = 181/307 (58%), Gaps = 14/307 (4%)

Query: 1   MMESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRI 60
           M  S    VPPGFRFHPTDEEL+ YYL+KK++ QK +++VIR++DL ++EPWDLQERC+I
Sbjct: 1   MGSSSNGGVPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKI 60

Query: 61  GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKG 120
           G   QNEWYFFSHKD+KYPTG+RTNRAT AGFWKATGRDK + +  K IGMRKTLVFYKG
Sbjct: 61  GSTPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFYKG 120

Query: 121 RAPNGQKTDWIMHEYRLE--SDENGPPQEEGWVVCRAFKKR-----ATGHTKSIDGWDSS 173
           RAP+GQKTDWIMHEYRLE   D    P E+GWVVCR F K+         + SI+  D  
Sbjct: 121 RAPHGQKTDWIMHEYRLEDADDPQANPSEDGWVVCRVFMKKNLFKVVNEGSSSINSLDQH 180

Query: 174 YFYDEPSGVSSVVDPIEYVSR-QPQSLLAQNLMCKQEIEAENLSFLQAADQYLQLPQLES 232
               + S  +  +    ++ R  P  L+  +     E+   +L+  Q    + + P L  
Sbjct: 181 NH--DASNNNHALQARSFMHRDSPYQLVRNHGAMTFELNKPDLALHQYPPIFHKPPSLGF 238

Query: 233 PSLPILKRPS----SISLTSENSAEEEQNRVNNINNNCNNANKKVTDWRALDKFVASQLS 288
                L R S    S  L  + + E   +         +N  + + +W  +D+ V   + 
Sbjct: 239 DYSSGLARDSESAASEGLQYQQACEPGLDVGTCETVASHNHQQGLGEWAMMDRLVTCHMG 298

Query: 289 QEDRCEG 295
            ED   G
Sbjct: 299 NEDSSRG 305

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M274|NAC66_ARATH NAC domain-containing protein 66 OS=Arabidopsis thaliana GN=NAC066 PE=2 SV=1

 Score =  251 bits (642), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 145/300 (48%), Positives = 175/300 (58%), Gaps = 49/300 (16%)

Query: 6   ESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQ 65
           +S VPPGFRFHPT+EEL+ YYLRKK+++ KIDLDVI DIDL ++EPWD+QE C+IG   Q
Sbjct: 8   QSQVPPGFRFHPTEEELLKYYLRKKISNIKIDLDVIPDIDLNKLEPWDIQEMCKIGTTPQ 67

Query: 66  NEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNG 125
           N+WYF+SHKDKKYPTGTRTNRAT  GFWKATGRDK +Y     IGMRKTLVFYKGRAP+G
Sbjct: 68  NDWYFYSHKDKKYPTGTRTNRATTVGFWKATGRDKTIYTNGDRIGMRKTLVFYKGRAPHG 127

Query: 126 QKTDWIMHEYRLE-----------------SDENGPPQEEGWVVCRAFKKRATGHTKSID 168
           QK+DWIMHEYRL+                  D  G   +EGWVVCR FKK          
Sbjct: 128 QKSDWIMHEYRLDESVLISSCGDHDVNVETCDVIG--SDEGWVVCRVFKKNNLCKNMI-- 183

Query: 169 GWDSSYFYDEPSGVSSVVDPIEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADQYLQLP 228
                      S  SSV  P        Q L      CK EI           D +L+LP
Sbjct: 184 ---------SSSPASSVKTPSFNEETIEQLLEVMGQSCKGEI---------VLDPFLKLP 225

Query: 229 QLESPSLPILKRPSSISLTSENSAEEEQNRVNNINNNCNNANKKVTDWRALDKFVASQLS 288
            LE          ++ ++TS     ++Q  VNN + +       +T W ALD+ VASQL+
Sbjct: 226 NLEC--------HNNTTITSYQWLIDDQ--VNNCHVSKVMDPSFITSWAALDRLVASQLN 275

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues such as tracheary elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPI7|NAC12_ARATH NAC domain-containing protein 12 OS=Arabidopsis thaliana GN=NAC012 PE=2 SV=1

 Score =  251 bits (640), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 148/336 (44%), Positives = 192/336 (57%), Gaps = 46/336 (13%)

Query: 6   ESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQ 65
           +S VPPGFRFHPT+EEL+ YYLRKKV SQKIDLDVIR++DL ++EPWD+QE CRIG   Q
Sbjct: 13  QSKVPPGFRFHPTEEELLHYYLRKKVNSQKIDLDVIREVDLNKLEPWDIQEECRIGSTPQ 72

Query: 66  NEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNG 125
           N+WYFFSHKDKKYPTGTRTNRAT+AGFWKATGRDK +    + IG+RKTLVFYKGRAP+G
Sbjct: 73  NDWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKIICSCVRRIGLRKTLVFYKGRAPHG 132

Query: 126 QKTDWIMHEYRLE------------SDENGPPQEEGWVVCRAFKKRATGHTKSIDGWDSS 173
           QK+DWIMHEYRL+            +++     EEGWVVCR F+K+   + + ID     
Sbjct: 133 QKSDWIMHEYRLDDTPMSNGYADVVTEDPMSYNEEGWVVCRVFRKK---NYQKIDDCPKI 189

Query: 174 YFYDEPSGVSSVVDP----IEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADQ--YLQL 227
                P        P     + V+     LL  +         E+ +  Q  D   ++QL
Sbjct: 190 TLSSLPDDTEEEKGPTFHNTQNVTGLDHVLLYMDRTGSNICMPESQTTTQHQDDVLFMQL 249

Query: 228 PQLESPS--LPI---LKRPSSISLTSENSAEEEQNRVNNINNNCNNANKKVTDWRALDKF 282
           P LE+P    P+      PS +  +       E+   +N              W +LD+ 
Sbjct: 250 PSLETPKSESPVDQSFLTPSKLDFSPVQEKITERPVCSN--------------WASLDRL 295

Query: 283 VASQLS--QEDRCEGESSFGAHDDNSDMALLLLQEW 316
           VA QL+    + C    SF   ++N D    ++Q W
Sbjct: 296 VAWQLNNGHHNPCH-RKSFDEEEENGDT---MMQRW 327

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulates the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C878|BRN1_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN1 PE=2 SV=1

 Score =  248 bits (632), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 110/158 (69%), Positives = 134/158 (84%), Gaps = 1/158 (0%)

Query: 2   MESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIG 61
           M S    VPPGFRFHPTDEEL+ YYL+KK++ +K +++VI+++DL +IEPWDLQ+RC+IG
Sbjct: 1   MSSSNGGVPPGFRFHPTDEELLHYYLKKKISYEKFEMEVIKEVDLNKIEPWDLQDRCKIG 60

Query: 62  YEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGR 121
              QNEWYFFSHKD+KYPTG+RTNRAT +GFWKATGRDK + +  K IGMRKTLVFYKGR
Sbjct: 61  STPQNEWYFFSHKDRKYPTGSRTNRATHSGFWKATGRDKCIRNSYKKIGMRKTLVFYKGR 120

Query: 122 APNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKR 159
           AP+GQKTDWIMHEYR+E  E+  P E+GWVVCR FKK+
Sbjct: 121 APHGQKTDWIMHEYRIEDTEDD-PCEDGWVVCRVFKKK 157

Transcription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z6B6|NAC76_ORYSJ NAC domain-containing protein 76 OS=Oryza sativa subsp. japonica GN=NAC76 PE=2 SV=2

 Score =  247 bits (630), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/153 (75%), Positives = 132/153 (86%), Gaps = 2/153 (1%)

Query: 9   VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEW 68
           VPPGFRFHPTDEEL+ YYLRKKVA + IDLDVIR+IDL ++EPWDL++RCRIG   QNEW
Sbjct: 10  VPPGFRFHPTDEELLYYYLRKKVAYEAIDLDVIREIDLNKLEPWDLKDRCRIGTGPQNEW 69

Query: 69  YFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKL-IGMRKTLVFYKGRAPNGQK 127
           YFFSHKDKKYPTGTRTNRAT AGFWKATGRDKA++  +   IGMRKTLVFY GRAP+G+K
Sbjct: 70  YFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLANACRIGMRKTLVFYVGRAPHGKK 129

Query: 128 TDWIMHEYRLESDENGPPQEEGWVVCRAFKKRA 160
           TDWIMHEYRL+ D N   QE+GWVVCR F K++
Sbjct: 130 TDWIMHEYRLDQD-NVDVQEDGWVVCRVFMKKS 161

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9MA17|SMB_ARATH Protein SOMBRERO OS=Arabidopsis thaliana GN=SMB PE=1 SV=1

 Score =  246 bits (628), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 112/152 (73%), Positives = 134/152 (88%), Gaps = 2/152 (1%)

Query: 9   VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEW 68
           VPPGFRFHPT+EEL+ YYL+KKV+ + IDLDVIR++DL ++EPW+L+E+CRIG   QNEW
Sbjct: 17  VPPGFRFHPTEEELLYYYLKKKVSYEPIDLDVIREVDLNKLEPWELKEKCRIGSGPQNEW 76

Query: 69  YFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVY-DKSKLIGMRKTLVFYKGRAPNGQK 127
           YFFSHKDKKYPTGTRTNRAT AGFWKATGRDK+++ + SK IG+RKTLVFY GRAP+GQK
Sbjct: 77  YFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSIHLNSSKKIGLRKTLVFYTGRAPHGQK 136

Query: 128 TDWIMHEYRLESDENGPPQEEGWVVCRAFKKR 159
           T+WIMHEYRL+  EN   QE+GWVVCR FKK+
Sbjct: 137 TEWIMHEYRLDDSEN-EIQEDGWVVCRVFKKK 167

Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 112/158 (70%), Gaps = 7/158 (4%)

Query: 9   VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEW 68
           +PPGFRFHPTDEEL+ +YL KKV         I ++DL + EPW+L    ++G   + EW
Sbjct: 16  LPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAKMG---EKEW 72

Query: 69  YFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQKT 128
           YFF  +D+KYPTG RTNRAT AG+WKATG+DK +Y    L+GM+KTLVFY+GRAP GQKT
Sbjct: 73  YFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGQKT 132

Query: 129 DWIMHEYRLE---SDENGPPQEEG-WVVCRAFKKRATG 162
           +W+MHEYRLE   S  N P   +  WV+CR F+K A G
Sbjct: 133 NWVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQKSAGG 170

Arabidopsis thaliana (taxid: 3702)

>sp|O49255|NAC29_ARATH NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1

 Score =  187 bits (476), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 83/162 (51%), Positives = 113/162 (69%), Gaps = 9/162 (5%)

Query: 6   ESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQ 65
           +S +PPGFRFHPTDEEL+ YYLR +  S+   + +I ++D+Y+ +PW L E+   G   +
Sbjct: 6   QSTLPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEFG---E 62

Query: 66  NEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNG 125
           NEWYFFS +++KYP G R NRA ++G+WKATG DKA++  S  +G++K LVFYKGR P G
Sbjct: 63  NEWYFFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSNVGVKKALVFYKGRPPKG 122

Query: 126 QKTDWIMHEYRLE------SDENGPPQEEGWVVCRAFKKRAT 161
            KTDWIMHEYRL       +  NG  + + WV+CR +KKR  
Sbjct: 123 IKTDWIMHEYRLHDSRKASTKRNGSMRLDEWVLCRIYKKRGA 164

May function in the transition between active cell division and cell expansion.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
359476838	358	PREDICTED: NAC domain-containing protein	0.968	0.854	0.835	1e-155
255581418	349	NAC domain-containing protein, putative	0.990	0.896	0.825	1e-144
312618436	345	wood-associated NAC domain transcription	0.987	0.904	0.805	1e-144
302399007	345	NAC domain class transcription factor [M	0.955	0.875	0.803	1e-142
224094935	350	NAC domain protein, IPR003441 [Populus t	0.984	0.888	0.789	1e-142
327397084	342	transcription factor [Populus trichocarp	0.984	0.909	0.791	1e-141
312618438	342	wood-associated NAC domain transcription	0.984	0.909	0.788	1e-140
356496665	344	PREDICTED: NAC domain-containing protein	0.977	0.898	0.790	1e-138
224134142	346	NAC domain protein, IPR003441 [Populus t	0.981	0.895	0.773	1e-138
356540803	375	PREDICTED: NAC domain-containing protein	0.987	0.832	0.773	1e-137

>gi|359476838|ref|XP_002266706.2| PREDICTED: NAC domain-containing protein 7-like [Vitis vinifera]

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 264/316 (83%), Positives = 290/316 (91%), Gaps = 10/316 (3%)

Query: 1   MMESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRI 60
           MM+SMES VPPGFRFHPTDEELVGYYL+KKVASQKIDLDVIRDIDLYRIEPWDLQERCRI
Sbjct: 23  MMDSMESCVPPGFRFHPTDEELVGYYLKKKVASQKIDLDVIRDIDLYRIEPWDLQERCRI 82

Query: 61  GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKG 120
           GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDK+KLIGMRKTLVFYKG
Sbjct: 83  GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKG 142

Query: 121 RAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATGHTKSIDGWDSSYFYDEPS 180
           RAPNGQKTDWIMHEYRLES+ENGPPQEEGWVVCRAFKKR T  +KSI+GWD+SYFYDEPS
Sbjct: 143 RAPNGQKTDWIMHEYRLESEENGPPQEEGWVVCRAFKKRTTSQSKSIEGWDTSYFYDEPS 202

Query: 181 GVSSVVDPIEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADQYLQLPQLESPSLPILKR 240
           GVS+V+DPI+Y+SRQPQ+ L QN +CKQEIEA+NL+F+ A + ++QLPQLESPSLP++KR
Sbjct: 203 GVSTVMDPIDYISRQPQNYLGQNFLCKQEIEADNLNFMHATEHFVQLPQLESPSLPLMKR 262

Query: 241 PSSISLTSENSAEEEQNRVNNINNNCNNANKKVTDWRALDKFVASQLSQEDRCEGE--SS 298
           PSS+SL SEN+ EE+Q R       CNNA +KVTDWRALDKFVASQLSQEDR EG+  SS
Sbjct: 263 PSSVSLISENNEEEDQTR------GCNNA-EKVTDWRALDKFVASQLSQEDRYEGDGVSS 315

Query: 299 FGAHDDNSDMALLLLQ 314
           FGAH  NSDMALLLLQ
Sbjct: 316 FGAH-HNSDMALLLLQ 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581418|ref|XP_002531517.1| NAC domain-containing protein, putative [Ricinus communis] gi|223528870|gb|EEF30871.1| NAC domain-containing protein, putative [Ricinus communis]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 265/321 (82%), Positives = 288/321 (89%), Gaps = 8/321 (2%)

Query: 1   MMESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRI 60
           MME MES VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQ+RC I
Sbjct: 1   MMEPMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQDRCGI 60

Query: 61  GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKG 120
           GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDK+KLIGMRKTLVFYKG
Sbjct: 61  GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKG 120

Query: 121 RAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATGHTKSIDGWDSSYFYDEPS 180
           RAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKR TG  KSI+GWDSSYFYDE S
Sbjct: 121 RAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRTTGQNKSIEGWDSSYFYDESS 180

Query: 181 GVSSVVDPIEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADQYLQLPQLESPSLPILKR 240
            VSSVVDPI+Y+SRQPQ+ LAQN +CKQEIEA+NLSF+  AD ++QLPQLESPSLP+LKR
Sbjct: 181 VVSSVVDPIDYISRQPQNFLAQNFLCKQEIEADNLSFMH-ADSFVQLPQLESPSLPLLKR 239

Query: 241 PSSISLTSE-----NSAEEEQNRVNNINNNCNNANKKVTDWRALDKFVASQLSQEDRCEG 295
           PSS+SL SE     N+ ++EQ R  + NNN N  NK+VTDWRALDKFVASQLSQEDR +G
Sbjct: 240 PSSLSLISEINNNNNNEKDEQARGCSSNNNNNINNKRVTDWRALDKFVASQLSQEDRYDG 299

Query: 296 E--SSFGAHDDNSDMALLLLQ 314
           +  SSFG  ++N+DM LLLLQ
Sbjct: 300 DAASSFGVAENNTDMQLLLLQ 320

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312618436|gb|ADR00338.1| wood-associated NAC domain transcription factor 5A [Populus trichocarpa] gi|327397082|dbj|BAK14358.1| transcription factor [Populus trichocarpa]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 256/318 (80%), Positives = 285/318 (89%), Gaps = 6/318 (1%)

Query: 1   MMESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRI 60
           MMESMES VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIR+IDLYRIEPWDLQERCRI
Sbjct: 1   MMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRI 60

Query: 61  GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKG 120
           GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDK+VYDK+KLIGMRKTLVFYKG
Sbjct: 61  GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYDKTKLIGMRKTLVFYKG 120

Query: 121 RAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATGHTKSIDGWDSSYFYDEPS 180
           RAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKR TG  KSI+GWDSSYFY+E S
Sbjct: 121 RAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRTTGQNKSIEGWDSSYFYEESS 180

Query: 181 GVSSVVDPIEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADQYLQLPQLESPSLPILKR 240
           GVSSVVDP++Y++RQPQ+ LAQN +CKQEIE +NLSF+  ++ ++QLPQLESPSLP++KR
Sbjct: 181 GVSSVVDPMDYITRQPQNFLAQNFLCKQEIEGDNLSFMH-SENFVQLPQLESPSLPLIKR 239

Query: 241 P-SSISLTSENSAEEEQNRVNNINNNCNNANKKVTDWRALDKFVASQLSQEDRCEGE--S 297
           P SS+SL SEN+    +    N     NN  +KVTDWRALDKFVASQLSQEDR +G+  S
Sbjct: 240 PSSSVSLISENNNSNNEVEEQN-RMLSNNNTQKVTDWRALDKFVASQLSQEDRYDGDGVS 298

Query: 298 SF-GAHDDNSDMALLLLQ 314
           SF GA +++SDM+LLLLQ
Sbjct: 299 SFVGAENNSSDMSLLLLQ 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399007|gb|ADL36798.1| NAC domain class transcription factor [Malus x domestica]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/311 (80%), Positives = 279/311 (89%), Gaps = 9/311 (2%)

Query: 1   MMESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRI 60
           MMES+ES VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRI
Sbjct: 1   MMESIESTVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRI 60

Query: 61  GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKG 120
           GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDK+VYDK+KLIGMRKTLVFYKG
Sbjct: 61  GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYDKAKLIGMRKTLVFYKG 120

Query: 121 RAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATGHTKSIDGWDSSYFYDEPS 180
           RAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKR +   KSI+GWDSSYFY+E +
Sbjct: 121 RAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRISSQNKSIEGWDSSYFYEELN 180

Query: 181 GVSSVVDPIEY-VSRQPQSLLAQNLMCKQEIEAENLSFLQAADQYLQLPQLESPSLPILK 239
           G++SV DP ++ +SRQPQS L+QN MCKQE EA++L+FL  +D ++QLPQLESPSLP++K
Sbjct: 181 GLTSVADPTDFMISRQPQSFLSQNFMCKQETEADSLNFLH-SDPFVQLPQLESPSLPLIK 239

Query: 240 RPSSISLTSENSAEEEQNRVNNINNNCNNANKKVTDWRALDKFVASQLSQEDRCE--GES 297
           RP+S+SL SEN+ E E  +       CNNA +KVTDWRALDKFVASQLSQE+R E  GE+
Sbjct: 240 RPTSMSLISENNTELEDEQS---IRGCNNA-EKVTDWRALDKFVASQLSQEERYEGDGEA 295

Query: 298 SFGAHDDNSDM 308
           SFGAHD+ SDM
Sbjct: 296 SFGAHDE-SDM 305

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094935|ref|XP_002310297.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222853200|gb|EEE90747.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 255/323 (78%), Positives = 284/323 (87%), Gaps = 12/323 (3%)

Query: 2   MESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIG 61
           MESMES VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIR+IDLYRIEPWDLQERCRIG
Sbjct: 1   MESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIG 60

Query: 62  YEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGR 121
           YEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDK+VYDK+KLIGMRKTLVFYKGR
Sbjct: 61  YEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYDKTKLIGMRKTLVFYKGR 120

Query: 122 APNGQKTDWIMHEYRLESDENGPPQ------EEGWVVCRAFKKRATGHTKSIDGWDSSYF 175
           APNGQKTDWIMHEYRLESDENGPPQ      EEGWVVCRAFKKR TG  KSI+GWDSSYF
Sbjct: 121 APNGQKTDWIMHEYRLESDENGPPQASLSTYEEGWVVCRAFKKRTTGQNKSIEGWDSSYF 180

Query: 176 YDEPSGVSSVVDPIEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADQYLQLPQLESPSL 235
           Y+E SGVSSVVDP++Y++RQPQ+ LAQN +CKQEIE +NLSF+  ++ ++QLPQLESPSL
Sbjct: 181 YEESSGVSSVVDPMDYITRQPQNFLAQNFLCKQEIEGDNLSFMH-SENFVQLPQLESPSL 239

Query: 236 PILKRP-SSISLTSENSAEEEQNRVNNINNNCNNANKKVTDWRALDKFVASQLSQEDRCE 294
           P++KRP SS+SL SEN+    +    N     NN  +KVTDWRALDKFVASQLSQEDR +
Sbjct: 240 PLIKRPSSSVSLISENNNSNNEVEEQN-RMLSNNNTQKVTDWRALDKFVASQLSQEDRYD 298

Query: 295 GE--SSF-GAHDDNSDMALLLLQ 314
           G+  SSF GA +++SDM+LLLLQ
Sbjct: 299 GDGVSSFVGAENNSSDMSLLLLQ 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327397084|dbj|BAK14359.1| transcription factor [Populus trichocarpa]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/317 (79%), Positives = 277/317 (87%), Gaps = 6/317 (1%)

Query: 1   MMESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRI 60
           MMESMES VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERC I
Sbjct: 1   MMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCWI 60

Query: 61  GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKG 120
           GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDK+KLIGMRKTLVFYKG
Sbjct: 61  GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKG 120

Query: 121 RAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATGHTKSIDGWDSSYFYDEPS 180
           RAPNGQKT WIMHEYRLESDENGPPQEEGWVVCRAFKKR TG TKSI+GWDSSYFY+E S
Sbjct: 121 RAPNGQKTHWIMHEYRLESDENGPPQEEGWVVCRAFKKRTTGQTKSIEGWDSSYFYEESS 180

Query: 181 GVSSVVDPIEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADQYLQLPQLESPSLPILKR 240
           GVSSVVDPI+Y++RQPQ  LA N +CKQEIE +NLSF+  ++ ++QLPQL+SPS P++KR
Sbjct: 181 GVSSVVDPIDYIARQPQGFLAHNFLCKQEIEGDNLSFMH-SENFVQLPQLKSPSEPLIKR 239

Query: 241 P-SSISLTSENSAEEEQNRVNNINNNCNNANKKVTDWRALDKFVASQLSQEDRCEGE--S 297
           P SS+SL SEN+    +      N   NN  +KVTDWRALDKFVASQLSQE+R +G+  S
Sbjct: 240 PTSSMSLISENNNSNNEEVEQ--NGLSNNNTQKVTDWRALDKFVASQLSQEERYDGDGVS 297

Query: 298 SFGAHDDNSDMALLLLQ 314
           SF   ++NSD+  LLLQ
Sbjct: 298 SFVEAENNSDLPFLLLQ 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312618438|gb|ADR00339.1| wood-associated NAC domain transcription factor 5B [Populus trichocarpa]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 250/317 (78%), Positives = 276/317 (87%), Gaps = 6/317 (1%)

Query: 1   MMESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRI 60
           MMESMES VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERC I
Sbjct: 1   MMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCWI 60

Query: 61  GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKG 120
           GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDK+KLIGMRKTLVFYKG
Sbjct: 61  GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKG 120

Query: 121 RAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATGHTKSIDGWDSSYFYDEPS 180
           RAPNGQKT WIMHEYRLESDENGPPQEEGWVVCRAFKKR TG TKSI+GWDSSYFY+E S
Sbjct: 121 RAPNGQKTHWIMHEYRLESDENGPPQEEGWVVCRAFKKRTTGQTKSIEGWDSSYFYEESS 180

Query: 181 GVSSVVDPIEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADQYLQLPQLESPSLPILKR 240
           GVSSVVDPI+Y++RQPQ  LA N +CKQEIE + LSF+  ++ ++QLPQL+SPS P++KR
Sbjct: 181 GVSSVVDPIDYIARQPQGFLAHNFLCKQEIEGDKLSFMH-SENFVQLPQLKSPSEPLIKR 239

Query: 241 P-SSISLTSENSAEEEQNRVNNINNNCNNANKKVTDWRALDKFVASQLSQEDRCEGE--S 297
           P SS+SL SEN+    +      N   NN  +KVTDWRALDKFVASQLSQE+R +G+  S
Sbjct: 240 PTSSMSLISENNNSNNEEVEQ--NGLSNNNTQKVTDWRALDKFVASQLSQEERYDGDGVS 297

Query: 298 SFGAHDDNSDMALLLLQ 314
           SF   ++NSD+  LLLQ
Sbjct: 298 SFVEAENNSDLPFLLLQ 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496665|ref|XP_003517186.1| PREDICTED: NAC domain-containing protein 7-like [Glycine max]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 253/320 (79%), Positives = 283/320 (88%), Gaps = 11/320 (3%)

Query: 2   MESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIG 61
           MESMES +PPGFRFHPTDEELVGYYLRKKVASQKIDLDVIR+IDLYRIEPWDLQERCRIG
Sbjct: 1   MESMESCIPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIG 60

Query: 62  YEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGR 121
           Y+EQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVY+++KLIGMRKTLVFYKGR
Sbjct: 61  YDEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYERAKLIGMRKTLVFYKGR 120

Query: 122 APNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATGHTK--SIDGWDSSYFYDEP 179
           APNGQK+DWIMHEYRLESDENGPPQEEGWVVCRAFKK+ TG TK  +I+GWDSSYFY+E 
Sbjct: 121 APNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKKTTGQTKTINIEGWDSSYFYEEA 180

Query: 180 SGVSSVVDPIEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADQYLQLPQLESPSLPILK 239
           SG S+VVDPIE +SRQ QS +AQN MCKQE+EA+NLS +   D ++QLPQLESPSLP++K
Sbjct: 181 SGASTVVDPIELISRQSQSFVAQNFMCKQELEADNLSCM-LQDPFVQLPQLESPSLPLVK 239

Query: 240 RPSSISLTSENSAEEE-QNRVNNINNNCNNANKKVTDWRALDKFVASQLSQE-DRCEGE- 296
           RPS++SL S+N+ +E+ QNR+  ++NN NN  K  TDWRALDKFVASQLSQE D  E   
Sbjct: 240 RPSTVSLVSDNNEDEDIQNRL--LSNN-NNTKKVTTDWRALDKFVASQLSQEVDTHESNG 296

Query: 297 --SSFGAHDDNSDMALLLLQ 314
             SSF  HDDN DMALLLLQ
Sbjct: 297 VPSSFQPHDDNHDMALLLLQ 316

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134142|ref|XP_002327766.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222836851|gb|EEE75244.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/322 (77%), Positives = 275/322 (85%), Gaps = 12/322 (3%)

Query: 2   MESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIG 61
           MESMES VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERC IG
Sbjct: 1   MESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCWIG 60

Query: 62  YEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGR 121
           YEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDK+KLIGMRKTLVFYKGR
Sbjct: 61  YEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKGR 120

Query: 122 APNGQKTDWIMHEYRLESDENGPPQ------EEGWVVCRAFKKRATGHTKSIDGWDSSYF 175
           APNGQKT WIMHEYRLESDENGPPQ      EEGWVVCRAFKKR TG TKSI+GWDSSYF
Sbjct: 121 APNGQKTHWIMHEYRLESDENGPPQASISTYEEGWVVCRAFKKRTTGQTKSIEGWDSSYF 180

Query: 176 YDEPSGVSSVVDPIEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADQYLQLPQLESPSL 235
           Y+E SGVSSVVDPI+Y++RQPQ  LA N +CKQEIE + LSF+  ++ ++QLPQL+SPS 
Sbjct: 181 YEESSGVSSVVDPIDYIARQPQGFLAHNFLCKQEIEGDKLSFMH-SENFVQLPQLKSPSE 239

Query: 236 PILKRP-SSISLTSENSAEEEQNRVNNINNNCNNANKKVTDWRALDKFVASQLSQEDRCE 294
           P++KRP SS+SL SEN+    +      N   NN  +KVTDWRALDKFVASQLSQE+R +
Sbjct: 240 PLIKRPTSSMSLISENNNSNNEEVEQ--NGLSNNNTQKVTDWRALDKFVASQLSQEERYD 297

Query: 295 GE--SSFGAHDDNSDMALLLLQ 314
           G+  SSF   ++NSD+  LLLQ
Sbjct: 298 GDGVSSFVEAENNSDLPFLLLQ 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540803|ref|XP_003538874.1| PREDICTED: NAC domain-containing protein 7-like [Glycine max]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 250/323 (77%), Positives = 278/323 (86%), Gaps = 11/323 (3%)

Query: 1   MMESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRI 60
           +MESMES VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIR+IDLYRIEPWDLQERCRI
Sbjct: 27  IMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRI 86

Query: 61  GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKG 120
           GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVY+++KLIGMRKTLVFYKG
Sbjct: 87  GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYERAKLIGMRKTLVFYKG 146

Query: 121 RAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATGHTK--SIDGWDSSYFYDE 178
           RAPNGQK+DWIMHEYRLESDENGPPQEEGWVVCRAFKK+ TG TK  +I+GW+SSYFYDE
Sbjct: 147 RAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKKTTGQTKTINIEGWESSYFYDE 206

Query: 179 PSG-VSSVVDPIEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADQYLQLPQLESPSLPI 237
            SG  S++VDPIE +SRQ QS LAQN MCKQE+EA+NL+ +   D ++QLPQLESPSLP+
Sbjct: 207 ASGATSTLVDPIELISRQSQSFLAQNFMCKQELEADNLTCMH-QDPFVQLPQLESPSLPL 265

Query: 238 LKRPSSISLTSENSAEEEQNRVNNINNNCNNANKKVTDWRALDKFVASQLSQEDRCEG-- 295
           +K+PS++SL S+N+ E E N+ N +  N NN  K  TDWRALDKFVASQLSQE       
Sbjct: 266 VKKPSTVSLVSDNNNEGEDNQ-NRLLFNNNNTKKVTTDWRALDKFVASQLSQEVNTHETN 324

Query: 296 ----ESSFGAHDDNSDMALLLLQ 314
                SSF  HDDN DMALLLLQ
Sbjct: 325 VGVLSSSFEPHDDNHDMALLLLQ 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2060979	365	VND1 "vascular related NAC-dom	0.958	0.830	0.670	2.4e-108
TAIR|locus:2122219	377	NAC076 "NAC domain containing	0.797	0.668	0.739	9.1e-100
TAIR|locus:2202028	395	NAC007 "NAC 007" [Arabidopsis	0.541	0.432	0.770	1.1e-84
TAIR|locus:2155046	292	NAC105 "NAC domain containing	0.898	0.972	0.585	1.3e-84
TAIR|locus:2026232	394	ANAC026 "Arabidopsis NAC domai	0.601	0.482	0.685	6.6e-83
TAIR|locus:2167923	348	NAC101 "NAC-domain protein 101	0.503	0.456	0.762	1.4e-74
TAIR|locus:2016049	324	VND7 "vascular related NAC-dom	0.670	0.654	0.603	4.7e-70
TAIR|locus:2035604	358	NAC012 "NAC domain containing	0.487	0.430	0.698	6.8e-65
TAIR|locus:2044360	365	NST1 "NAC SECONDARY WALL THICK	0.487	0.421	0.680	8.7e-65
TAIR|locus:2122804	341	NAC070 "NAC domain containing	0.503	0.466	0.701	1.8e-62

TAIR|locus:2060979 VND1 "vascular related NAC-domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
 Identities = 218/325 (67%), Positives = 249/325 (76%)

Query:     2 MESMESY-VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRI 60
             ME MES  VPPGFRFHPTDEELVGYYLRKK+ASQKIDLDVIRDIDLYRIEPWDLQE+CRI
Sbjct:     1 MEPMESCSVPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIRDIDLYRIEPWDLQEQCRI 60

Query:    61 GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKG 120
             GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDK+KLIGMRKTLVFYKG
Sbjct:    61 GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKG 120

Query:   121 RAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATGHTKSIDGWDSSYFYDE-- 178
             RAPNG+K+DWIMHEYRLESDEN PPQEEGWVVCRAFKKRATG  K+ + W SSYFYDE  
Sbjct:   121 RAPNGKKSDWIMHEYRLESDENAPPQEEGWVVCRAFKKRATGQAKNTETWSSSYFYDEVA 180

Query:   179 PSGVSSVVDPIEYVSRQPQSLLAQNLMCKQEIEA--ENLSFLQAADXXXXXXXXXXXXXX 236
             P+GV+SV+DPI+Y+S+Q  ++  + LMCKQE+E   + ++++Q+ +              
Sbjct:   181 PNGVNSVMDPIDYISKQQHNIFGKGLMCKQELEGMVDGINYIQS-NQFIQLPQLQSPSLP 239

Query:   237 XXKRPSS-ISLTS-ENS-------AEEEQXXXXXXXXXXXXXXKKVT---DWRALDKFVA 284
               KRPSS +S+TS +N+       A+EE               K+V    +WR LDKFVA
Sbjct:   240 LMKRPSSSMSITSMDNNYNYKLPLADEESFESFIRGEDRRKKKKQVMMTGNWRELDKFVA 299

Query:   285 SQL-SQEDRCEGESSF-GAHDDNSD 307
             SQL SQED   G SSF G H  N D
Sbjct:   300 SQLMSQEDN--GTSSFAGHHIVNED 322

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2122219 NAC076 "NAC domain containing protein 76" [Arabidopsis thaliana (taxid:3702)]

 Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
 Identities = 193/261 (73%), Positives = 212/261 (81%)

Query:     2 MESMESY--VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCR 59
             MES++    VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQE CR
Sbjct:     1 MESVDQSCSVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQESCR 60

Query:    60 IGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYK 119
             IGYEE+NEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYK
Sbjct:    61 IGYEERNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYK 120

Query:   120 GRAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRA-TGHTKSIDGWDSSYFYDE 178
             GRAPNGQKTDWIMHEYRLESDEN PPQEEGWVVCRAFKK+  TG  K+ + W SSYFYDE
Sbjct:   121 GRAPNGQKTDWIMHEYRLESDENAPPQEEGWVVCRAFKKKPMTGQAKNTETWSSSYFYDE 180

Query:   179 -PSGVSSVVDPIEYVSRQPQSLLAQNLMCKQEIEAEN--LSFLQAADXXXXXXXXXXXXX 235
              PSGV SV +P+ YVS+Q Q++ AQ+LM KQE+E  +  L+F+   D             
Sbjct:   181 LPSGVRSVTEPLNYVSKQKQNVFAQDLMFKQELEGSDIGLNFIHC-DQFIQLPQLESPSL 239

Query:   236 XXXKRPSSISLTSENSAEEEQ 256
                KRP  +SLTS  S E+ +
Sbjct:   240 PLTKRP--VSLTSITSLEKNK 258

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2202028 NAC007 "NAC 007" [Arabidopsis thaliana (taxid:3702)]

 Score = 751 (269.4 bits), Expect = 1.1e-84, Sum P(3) = 1.1e-84
 Identities = 134/174 (77%), Positives = 155/174 (89%)

Query:     7 SYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQN 66
             S+VPPGFRFHPTDEELV YYLRKKVAS++I++D I+DIDLY+IEPWDLQE C+IG+EEQ+
Sbjct:     5 SHVPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGHEEQS 64

Query:    67 EWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQ 126
             +WYFFSHKDKKYPTGTRTNRAT AGFWKATGRDKA+Y +  LIGMRKTLVFYKGRAPNGQ
Sbjct:    65 DWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRAPNGQ 124

Query:   127 KTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATGHTKSIDGWDSS--YFYDE 178
             K+DWIMHEYRLE+DENG PQEEGWVVCR FKKR     + +  +DSS  ++YD+
Sbjct:   125 KSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRLAA-VRRMGDYDSSPSHWYDD 177

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2155046 NAC105 "NAC domain containing protein 105" [Arabidopsis thaliana (taxid:3702)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 175/299 (58%), Positives = 207/299 (69%)

Query:     1 MMESMESY---VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQER 57
             MM+  + Y   +PPGFRFHPTDEELVGYYL+KK+ASQ+IDLDVIR+IDLY+IEPWDLQER
Sbjct:     1 MMKVDQDYSCSIPPGFRFHPTDEELVGYYLKKKIASQRIDLDVIREIDLYKIEPWDLQER 60

Query:    58 CRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVF 117
             CRIGYEEQ EWYFFSH+DKKYPTGTRTNRAT+AGFWKATGRDKAVY  SKLIGMRKTLVF
Sbjct:    61 CRIGYEEQTEWYFFSHRDKKYPTGTRTNRATVAGFWKATGRDKAVYLNSKLIGMRKTLVF 120

Query:   118 YKGRAPNGQKTDWIMHEY-RLESDENGPPQEEGWVVCRAFKKRATGHTKSIDGWDSS-YF 175
             Y+GRAPNGQK+DWI+HEY  LES +N PPQEEGWVVCRAFKKR T  TK    WD +  F
Sbjct:   121 YRGRAPNGQKSDWIIHEYYSLESHQNSPPQEEGWVVCRAFKKRTTIPTKRRQLWDPNCLF 180

Query:   176 YDEPSGVSSVVDPIEYVSRQPQSLLAQNLMCKQEIEAENLSFLQAADXXXXXXX-XXXXX 234
             YD+    +++++P++  +R      A     KQE+ +E  S +Q  D             
Sbjct:   181 YDD----ATLLEPLDKRARHNPDFTATPF--KQELLSE-ASHVQDGDFGSMYLQCIDDDQ 233

Query:   235 XXXXKRPSSISLTSENSAEEEQXXXXXXXXXXXXXXKKVTDWRALDKFVASQ--LSQED 291
                  +  S SL SE +                   K++TDWR LDKFVASQ  +S ED
Sbjct:   234 FSQLPQLESPSLPSEITPHSTTFSENSSRKDDMSSEKRITDWRYLDKFVASQFLMSGED 292

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2026232 ANAC026 "Arabidopsis NAC domain containing protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 731 (262.4 bits), Expect = 6.6e-83, Sum P(3) = 6.6e-83
 Identities = 135/197 (68%), Positives = 160/197 (81%)

Query:     7 SYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQN 66
             S VPPGFRFHPTDEELV YYLRKKVAS++I++D+I+D+DLY+IEP DLQE C+IG EEQ+
Sbjct:     5 SQVPPGFRFHPTDEELVDYYLRKKVASKRIEIDIIKDVDLYKIEPCDLQELCKIGNEEQS 64

Query:    67 EWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQ 126
             EWYFFSHKDKKYPTGTRTNRAT AGFWKATGRDKA+Y +  LIGMRKTLVFYKGRAPNGQ
Sbjct:    65 EWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYIRHSLIGMRKTLVFYKGRAPNGQ 124

Query:   127 KTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATGHTKSIDGWDSS---YFYDEPSGVS 183
             K+DWIMHEYRLE+ ENG PQEEGWVVCR FKK+     + +  + SS   ++YD+   +S
Sbjct:   125 KSDWIMHEYRLETSENGTPQEEGWVVCRVFKKKLAATVRKMGDYHSSPSQHWYDDQ--LS 182

Query:   184 SVVDPIEYVSRQPQSLL 200
              +    E +S  P+  L
Sbjct:   183 FMAS--EIISSSPRQFL 197

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2167923 NAC101 "NAC-domain protein 101" [Arabidopsis thaliana (taxid:3702)]

 Score = 702 (252.2 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
 Identities = 122/160 (76%), Positives = 142/160 (88%)

Query:     2 MESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIG 61
             MES+ +++PPG+RFHPTDEELV YYL+ KVA   + +DVI+D+DLY+IEPWD+QE C  G
Sbjct:     1 MESL-AHIPPGYRFHPTDEELVDYYLKNKVAFPGMQVDVIKDVDLYKIEPWDIQELCGRG 59

Query:    62 YEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGR 121
               E+ EWYFFSHKDKKYPTGTRTNRAT +GFWKATGRDKA+Y K +L+GMRKTLVFYKGR
Sbjct:    60 TGEEREWYFFSHKDKKYPTGTRTNRATGSGFWKATGRDKAIYSKQELVGMRKTLVFYKGR 119

Query:   122 APNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRAT 161
             APNGQK+DWIMHEYRLE+DENGPP EEGWVVCRAFKK+ T
Sbjct:   120 APNGQKSDWIMHEYRLETDENGPPHEEGWVVCRAFKKKLT 159

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP;RCA

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2016049 VND7 "vascular related NAC-domain protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 690 (248.0 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
 Identities = 131/217 (60%), Positives = 159/217 (73%)

Query:     5 MESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEE 64
             M+S +PPGFRFHPT+EELVGYYL +K+ S K  LDVI +IDLY++EPWD+Q RC++GYEE
Sbjct:     5 MQSSMPPGFRFHPTEEELVGYYLDRKINSMKSALDVIVEIDLYKMEPWDIQARCKLGYEE 64

Query:    65 QNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPN 124
             QNEWYFFSHKD+KYPTGTRTNRAT AGFWKATGRDKAV  K+ +IGMRKTLV+YKGRAPN
Sbjct:    65 QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNSVIGMRKTLVYYKGRAPN 124

Query:   125 GQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATGHTK-SIDGWDSSYFYDEPSG-- 181
             G+K+DWIMHEYRL++ E  P QEEGWVVCRAF+K          + W +  ++ E S   
Sbjct:   125 GRKSDWIMHEYRLQNSELAPVQEEGWVVCRAFRKPIPNQRPLGYEPWQNQLYHVESSNNY 184

Query:   182 VSSV-VDPIEYVSRQPQSL-LAQNLMCKQEIEAENLS 216
              SSV ++   ++     S  L Q LM        N S
Sbjct:   185 SSSVTMNTSHHIGASSSSHNLNQMLMSNNHYNPNNTS 221

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP;RCA

GO:0010089 "xylem development" evidence=RCA;IMP;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2035604 NAC012 "NAC domain containing protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
 Identities = 116/166 (69%), Positives = 134/166 (80%)

Query:     6 ESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQ 65
             +S VPPGFRFHPT+EEL+ YYLRKKV SQKIDLDVIR++DL ++EPWD+QE CRIG   Q
Sbjct:    13 QSKVPPGFRFHPTEEELLHYYLRKKVNSQKIDLDVIREVDLNKLEPWDIQEECRIGSTPQ 72

Query:    66 NEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNG 125
             N+WYFFSHKDKKYPTGTRTNRAT+AGFWKATGRDK +    + IG+RKTLVFYKGRAP+G
Sbjct:    73 NDWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKIICSCVRRIGLRKTLVFYKGRAPHG 132

Query:   126 QKTDWIMHEYRLESD--ENG-------PPQ---EEGWVVCRAFKKR 159
             QK+DWIMHEYRL+     NG        P    EEGWVVCR F+K+
Sbjct:   133 QKSDWIMHEYRLDDTPMSNGYADVVTEDPMSYNEEGWVVCRVFRKK 178

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IGI;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IGI

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2044360 NST1 "NAC SECONDARY WALL THICKENING PROMOTING FACTOR1" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
 Identities = 115/169 (68%), Positives = 133/169 (78%)

Query:     6 ESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQ 65
             +S VPPGFRFHPT+EEL+ YYLRKKV S +IDLDVIRD+DL ++EPWD+QE C+IG   Q
Sbjct:    13 QSQVPPGFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWDIQEMCKIGTTPQ 72

Query:    66 NEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNG 125
             N+WYFFSHKDKKYPTGTRTNRAT AGFWKATGRDK +Y   + IGMRKTLVFYKGRAP+G
Sbjct:    73 NDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYSNGRRIGMRKTLVFYKGRAPHG 132

Query:   126 QKTDWIMHEYRLESDENGPP---------------QEEGWVVCRAFKKR 159
             QK+DWIMHEYRL+ +   P                Q+EGWVVCR FKK+
Sbjct:   133 QKSDWIMHEYRLDDNIISPEDVTVHEVVSIIGEASQDEGWVVCRIFKKK 181

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IGI;IMP

GO:0009901 "anther dehiscence" evidence=IGI

GO:0009809 "lignin biosynthetic process" evidence=IGI

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2122804 NAC070 "NAC domain containing protein 70" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 113/161 (70%), Positives = 132/161 (81%)

Query:     1 MMESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRI 60
             M  S    VPPGFRFHPTDEEL+ YYL+KK++ QK +++VIR++DL ++EPWDLQERC+I
Sbjct:     1 MGSSSNGGVPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKI 60

Query:    61 GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKG 120
             G   QNEWYFFSHKD+KYPTG+RTNRAT AGFWKATGRDK + +  K IGMRKTLVFYKG
Sbjct:    61 GSTPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFYKG 120

Query:   121 RAPNGQKTDWIMHEYRLES--DENGPPQEEGWVVCRAFKKR 159
             RAP+GQKTDWIMHEYRLE   D    P E+GWVVCR F K+
Sbjct:   121 RAPHGQKTDWIMHEYRLEDADDPQANPSEDGWVVCRVFMKK 161

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036814001 SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (335 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	8e-79

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  235 bits (602), Expect = 8e-79
 Identities = 83/131 (63%), Positives = 105/131 (80%), Gaps = 4/131 (3%)

Query: 10  PPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQERCRIGYEEQNEW 68
           PPGFRFHPTDEELV YYL++KV  + + L DVI ++D+Y+ EPWDL +    G +   EW
Sbjct: 2   PPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGD--REW 59

Query: 69  YFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDK-SKLIGMRKTLVFYKGRAPNGQK 127
           YFFS +D+KYP G+RTNRAT +G+WKATG+DK V  K  +++GM+KTLVFYKGRAP G+K
Sbjct: 60  YFFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRAPKGEK 119

Query: 128 TDWIMHEYRLE 138
           TDW+MHEYRLE
Sbjct: 120 TDWVMHEYRLE 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=5.5e-44  Score=300.72  Aligned_cols=127  Identities=54%  Similarity=1.126  Sum_probs=97.0

Q ss_pred             CCCCceeCCChHHHHHHHHHHHHhcCCCCC-CceecccCCCCCCchhhhhhhcCcccCCeEEEEeccCCCCCCCCccccc
Q 021172            9 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRA   87 (316)
Q Consensus         9 LPpGfRF~PTDeELV~~YL~~Ki~g~~l~~-~~I~dvDvy~~ePwdL~~~~~~g~~~~~ewYFFs~r~~k~~tG~R~nRa   87 (316)
                      |||||||+|||+|||.+||++|+.+.+++. ++|.++|||.+|||+|+....   ..+++||||+++.+++++|.|++|+
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~---~~~~~~yFF~~~~~~~~~~~r~~R~   77 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFK---GGDEEWYFFSPRKKKYPNGGRPNRV   77 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSS---S-SSEEEEEEE----------S-EE
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhcc---CCCceEEEEEecccccCCccccccc
Confidence            899999999999999999999999999887 799999999999999995322   2457999999999999999999999


Q ss_pred             ccCceeeecCCCeeeec-CCeeEEEEEEEEEeecCCCCCCCcCeEEEEEEeC
Q 021172           88 TMAGFWKATGRDKAVYD-KSKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE  138 (316)
Q Consensus        88 t~~G~Wk~tG~~k~I~~-~g~~IG~KKtLvFy~gr~p~g~KT~WvMhEY~L~  138 (316)
                      +++|+||++|+.++|.. ++.+||+||+|+||.++.+++.||+|+||||+|+
T Consensus        78 ~~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   78 TGGGYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             ETTEEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             ccceEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            99999999999999998 8999999999999999888999999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	316
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		2e-42
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		5e-42
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		6e-42

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 106/161 (65%), Gaps = 10/161 (6%)
Query: 6   ESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQ 65
           E  +PPGFRFHPTD+ELV +YL +K A Q++ + +I ++DLY+ +PWDL ER   G    
Sbjct: 12  ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG---A 68
Query: 66  NEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNG 125
            EWYFF+ +D+KYP G+R NRA   G+WKATG DK V  + + +G++K LVFY G+AP G
Sbjct: 69  REWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRG 128
Query: 126 QKTDWIMHEYRLESDENGPPQE-------EGWVVCRAFKKR 159
            KTDWIMHEYRL                 + WV+CR + K+
Sbjct: 129 VKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  167 bits (424), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 77/157 (49%), Positives = 107/157 (68%), Gaps = 5/157 (3%)
Query: 9   VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEW 68
           +PPGFRF+PTDEEL+  YL +K A     L +I +IDLY+ +PW L  +   G   + EW
Sbjct: 20  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEW 76
Query: 69  YFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQKT 128
           YFFS +D+KYP G+R NR   +G+WKATG DK +  + + +G++K LVFY G+AP G KT
Sbjct: 77  YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKT 136
Query: 129 DWIMHEYRL--ESDENGPPQEEGWVVCRAFKKRATGH 163
           +WIMHEYRL   S  NG  + + WV+CR +KK+++  
Sbjct: 137 NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQ 173

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  167 bits (424), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 77/157 (49%), Positives = 107/157 (68%), Gaps = 5/157 (3%)
Query: 9   VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEW 68
           +PPGFRF+PTDEEL+  YL +K A     L +I +IDLY+ +PW L  +   G   + EW
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEW 73
Query: 69  YFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQKT 128
           YFFS +D+KYP G+R NR   +G+WKATG DK +  + + +G++K LVFY G+AP G KT
Sbjct: 74  YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKT 133
Query: 129 DWIMHEYRL--ESDENGPPQEEGWVVCRAFKKRATGH 163
           +WIMHEYRL   S  NG  + + WV+CR +KK+++  
Sbjct: 134 NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQ 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
1ut7_A	171	No apical meristem protein; transcription regulati	1e-101
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	1e-100

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  294 bits (756), Expect = e-101
 Identities = 77/165 (46%), Positives = 108/165 (65%), Gaps = 5/165 (3%)

Query: 1   MMESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRI 60
                +  +PPGFRF+PTDEEL+  YL +K A     L +I +IDLY+ +PW L  +   
Sbjct: 9   TDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALF 68

Query: 61  GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKG 120
           G   + EWYFFS +D+KYP G+R NR   +G+WKATG DK +  + + +G++K LVFY G
Sbjct: 69  G---EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIG 125

Query: 121 RAPNGQKTDWIMHEYRLE--SDENGPPQEEGWVVCRAFKKRATGH 163
           +AP G KT+WIMHEYRL   S  NG  + + WV+CR +KK+++  
Sbjct: 126 KAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQ 170

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  292 bits (749), Expect = e-100
 Identities = 80/170 (47%), Positives = 108/170 (63%), Gaps = 10/170 (5%)

Query: 1   MMESMESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRI 60
                E  +PPGFRFHPTD+ELV +YL +K A Q++ + +I ++DLY+ +PWDL ER   
Sbjct: 7   RDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF 66

Query: 61  GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKG 120
           G     EWYFF+ +D+KYP G+R NRA   G+WKATG DK V  + + +G++K LVFY G
Sbjct: 67  G---AREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAG 123

Query: 121 RAPNGQKTDWIMHEYRLESDE-------NGPPQEEGWVVCRAFKKRATGH 163
           +AP G KTDWIMHEYRL            G  + + WV+CR + K+    
Sbjct: 124 KAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWE 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=2.8e-58  Score=407.01  Aligned_cols=151  Identities=52%  Similarity=1.080  Sum_probs=133.7

Q ss_pred             CCCCCCceeCCChHHHHHHHHHHHHhcCCCCCCceecccCCCCCCchhhhhhhcCcccCCeEEEEeccCCCCCCCCcccc
Q 021172            7 SYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNR   86 (316)
Q Consensus         7 ~~LPpGfRF~PTDeELV~~YL~~Ki~g~~l~~~~I~dvDvy~~ePwdL~~~~~~g~~~~~ewYFFs~r~~k~~tG~R~nR   86 (316)
                      ..|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+||+.+..|   +++||||+++++||++|.|+||
T Consensus        13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g---~~ewYFFs~r~~ky~~g~R~nR   89 (174)
T 3ulx_A           13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG---AREWYFFTPRDRKYPNGSRPNR   89 (174)
T ss_dssp             TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSC---SSEEEEEEECCC-----CCSCE
T ss_pred             cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccC---CceEEEEeccccccCCCCCcee
Confidence            5699999999999999999999999999999999999999999999999987554   5899999999999999999999


Q ss_pred             cccCceeeecCCCeeeecCCeeEEEEEEEEEeecCCCCCCCcCeEEEEEEeCCCCCCC-------CCCCceEEEEEEEeC
Q 021172           87 ATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENGP-------PQEEGWVVCRAFKKR  159 (316)
Q Consensus        87 at~~G~Wk~tG~~k~I~~~g~~IG~KKtLvFy~gr~p~g~KT~WvMhEY~L~~~~~~~-------~~~~~~VLCrIf~K~  159 (316)
                      +|++||||+||++++|..+|.+||+||+|+||.|++|+|.||+|+||||+|.......       ...++|||||||+|+
T Consensus        90 ~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~  169 (174)
T 3ulx_A           90 AAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK  169 (174)
T ss_dssp             EETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESC
T ss_pred             ecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcC
Confidence            9999999999999999999999999999999999999999999999999998764321       236799999999987


Q ss_pred             C
Q 021172          160 A  160 (316)
Q Consensus       160 ~  160 (316)
                      +
T Consensus       170 ~  170 (174)
T 3ulx_A          170 N  170 (174)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=1.4e-57  Score=401.66  Aligned_cols=152  Identities=49%  Similarity=1.012  Sum_probs=130.6

Q ss_pred             CCCCCCceeCCChHHHHHHHHHHHHhcCCCCCCceecccCCCCCCchhhhhhhcCcccCCeEEEEeccCCCCCCCCcccc
Q 021172            7 SYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNR   86 (316)
Q Consensus         7 ~~LPpGfRF~PTDeELV~~YL~~Ki~g~~l~~~~I~dvDvy~~ePwdL~~~~~~g~~~~~ewYFFs~r~~k~~tG~R~nR   86 (316)
                      ..|||||||||||||||.|||++|+.+.+++.++|+++|||++|||+|++.+..|   +++||||+++++||++|.|+||
T Consensus        15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g---~~ewyFFs~r~~k~~~g~R~~R   91 (171)
T 1ut7_A           15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEWYFFSPRDRKYPNGSRPNR   91 (171)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC---SSEEEEEEECCC-------CCE
T ss_pred             cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcC---CccEEEEeccccccCCCCcccc
Confidence            5799999999999999999999999999999999999999999999999987544   6899999999999999999999


Q ss_pred             cccCceeeecCCCeeeecCCeeEEEEEEEEEeecCCCCCCCcCeEEEEEEeCCCCCC--CCCCCceEEEEEEEeCCC
Q 021172           87 ATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENG--PPQEEGWVVCRAFKKRAT  161 (316)
Q Consensus        87 at~~G~Wk~tG~~k~I~~~g~~IG~KKtLvFy~gr~p~g~KT~WvMhEY~L~~~~~~--~~~~~~~VLCrIf~K~~~  161 (316)
                      +|++||||+||++++|..++.+||+||+|+||+|++|+|.||+|+||||+|......  ....++|||||||+|+.+
T Consensus        92 ~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~  168 (171)
T 1ut7_A           92 VAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS  168 (171)
T ss_dssp             EETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred             cCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence            999999999999999999999999999999999999999999999999999876421  123689999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	316
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	5e-70

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  212 bits (542), Expect = 5e-70
 Identities = 77/152 (50%), Positives = 104/152 (68%), Gaps = 5/152 (3%)

Query: 10  PPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEWY 69
           PPGFRF+PTDEEL+  YL +K A     L +I +IDLY+ +PW L  +   G +E   WY
Sbjct: 18  PPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE---WY 74

Query: 70  FFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQKTD 129
           FFS +D+KYP G+R NR   +G+WKATG DK +  + + +G++K LVFY G+AP G KT+
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTN 134

Query: 130 WIMHEYRL--ESDENGPPQEEGWVVCRAFKKR 159
           WIMHEYRL   S  NG  + + WV+CR +KK+
Sbjct: 135 WIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3e-53  Score=369.60  Aligned_cols=151  Identities=50%  Similarity=1.033  Sum_probs=129.0

Q ss_pred             cCCCCCCceeCCChHHHHHHHHHHHHhcCCCCCCceecccCCCCCCchhhhhhhcCcccCCeEEEEeccCCCCCCCCccc
Q 021172            6 ESYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTN   85 (316)
Q Consensus         6 ~~~LPpGfRF~PTDeELV~~YL~~Ki~g~~l~~~~I~dvDvy~~ePwdL~~~~~~g~~~~~ewYFFs~r~~k~~tG~R~n   85 (316)
                      +..|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+|++....+   +++||||+++.+++++|.|.+
T Consensus        14 ~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~---~~~wyFft~~~~k~~~g~r~~   90 (166)
T d1ut7a_          14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEWYFFSPRDRKYPNGSRPN   90 (166)
T ss_dssp             SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC---SSEEEEEEECCC-------CC
T ss_pred             cccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccC---cceEEEEeeeccccCCCCccc
Confidence            35699999999999999999999999999999999999999999999999875433   678999999999999999999


Q ss_pred             ccccCceeeecCCCeeeecCCeeEEEEEEEEEeecCCCCCCCcCeEEEEEEeCCCCC--CCCCCCceEEEEEEEeC
Q 021172           86 RATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDEN--GPPQEEGWVVCRAFKKR  159 (316)
Q Consensus        86 Rat~~G~Wk~tG~~k~I~~~g~~IG~KKtLvFy~gr~p~g~KT~WvMhEY~L~~~~~--~~~~~~~~VLCrIf~K~  159 (316)
                      |+|++|+||++|++++|.++|.+||+||+|+||+++++++.+|+|+||||+|.+...  .....++|||||||+|+
T Consensus        91 R~~g~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~~Kk  166 (166)
T d1ut7a_          91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ  166 (166)
T ss_dssp             EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC
T ss_pred             cccCCCEecccCCCceEecCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEEEEEEecC
Confidence            999999999999999999999999999999999999999999999999999987532  22235789999999984