Query 021174
Match_columns 316
No_of_seqs 166 out of 1184
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 13:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jg6_A DNA-3-methyladenine gly 100.0 8.9E-93 3.1E-97 633.3 18.4 184 120-304 1-184 (186)
2 2ofk_A 3-methyladenine DNA gly 100.0 1E-91 3.5E-96 625.3 19.0 183 120-303 1-183 (183)
3 3n0u_A Probable N-glycosylase/ 97.4 0.00031 1.1E-08 63.5 8.1 106 147-291 46-152 (219)
4 1orn_A Endonuclease III; DNA r 96.2 0.054 1.8E-06 48.6 11.9 69 151-223 33-101 (226)
5 1kea_A Possible G-T mismatches 96.1 0.036 1.2E-06 49.4 10.2 101 151-289 35-135 (221)
6 2abk_A Endonuclease III; DNA-r 95.7 0.045 1.5E-06 48.3 9.1 71 150-224 28-98 (211)
7 3n5n_X A/G-specific adenine DN 95.6 0.13 4.5E-06 48.2 12.5 71 148-223 46-116 (287)
8 1kg2_A A/G-specific adenine gl 95.4 0.19 6.6E-06 44.7 12.0 100 150-288 29-128 (225)
9 3fhg_A Mjogg, N-glycosylase/DN 94.6 0.11 3.9E-06 45.7 8.3 112 146-291 28-139 (207)
10 1pu6_A 3-methyladenine DNA gly 94.2 0.33 1.1E-05 43.2 10.4 107 151-289 30-141 (218)
11 2yg9_A DNA-3-methyladenine gly 94.0 0.22 7.4E-06 44.7 8.9 130 129-291 38-169 (225)
12 3fsp_A A/G-specific adenine gl 93.7 0.59 2E-05 44.2 11.7 72 148-224 36-107 (369)
13 2h56_A DNA-3-methyladenine gly 92.6 0.22 7.6E-06 44.7 6.7 129 130-291 30-161 (233)
14 3s6i_A DNA-3-methyladenine gly 92.3 0.78 2.7E-05 41.1 9.8 129 129-292 25-163 (228)
15 3fhf_A Mjogg, N-glycosylase/DN 91.5 0.73 2.5E-05 41.3 8.6 116 147-300 40-156 (214)
16 4e9f_A Methyl-CPG-binding doma 89.4 0.57 2E-05 40.3 5.8 57 152-210 32-88 (161)
17 2jhn_A ALKA, 3-methyladenine D 87.7 2.1 7.3E-05 39.5 8.9 123 130-290 95-232 (295)
18 3i0w_A 8-oxoguanine-DNA-glycos 87.2 2.8 9.7E-05 38.7 9.4 128 130-292 95-235 (290)
19 4b21_A Probable DNA-3-methylad 87.0 2 6.7E-05 38.7 8.0 130 130-291 37-173 (232)
20 1v38_A SAM-domain protein sams 82.2 1.3 4.4E-05 33.5 3.8 43 174-218 25-70 (78)
21 2d3d_A VTS1 protein; RNA bindi 82.1 2.3 8E-05 33.7 5.4 47 174-222 31-77 (88)
22 2b6g_A VTS1P; alpha-helix, pen 80.7 3.2 0.00011 34.6 6.0 54 166-222 55-108 (119)
23 1ucv_A Ephrin type-A receptor 79.9 2.8 9.4E-05 31.7 5.0 46 174-221 20-68 (81)
24 3h8m_A Ephrin type-A receptor 79.0 2.9 0.0001 32.6 5.0 43 174-220 38-85 (90)
25 2kso_A Ephrin type-A receptor 78.2 4.4 0.00015 30.9 5.7 46 174-221 29-77 (82)
26 2dl0_A SAM and SH3 domain-cont 74.6 1.4 4.6E-05 35.0 2.0 43 174-218 36-81 (97)
27 1b0x_A Protein (EPHA4 receptor 74.5 4.5 0.00015 31.4 5.0 47 174-222 39-88 (94)
28 1mpg_A ALKA, 3-methyladenine D 74.3 8.8 0.0003 35.0 7.6 122 141-297 103-241 (282)
29 2es6_A VTS1P; SAM domain, prot 74.3 4.3 0.00015 33.0 4.9 46 174-221 44-89 (101)
30 1b4f_A EPHB2; SAM domain, EPH 73.7 5 0.00017 30.1 4.9 47 175-223 25-74 (82)
31 3hil_A Ephrin type-A receptor 73.1 2.5 8.6E-05 32.5 3.1 40 174-217 36-80 (82)
32 1x40_A ARAP2; ASAP-related pro 72.5 2.5 8.4E-05 32.9 3.0 45 174-220 28-75 (91)
33 2e8n_A Ephrin type-A receptor 72.0 3.7 0.00013 31.5 3.8 47 174-222 25-74 (88)
34 2eao_A Ephrin type-B receptor 71.6 5.4 0.00019 31.2 4.8 44 175-220 36-82 (99)
35 2k4p_A Phosphatidylinositol-3, 69.3 5.5 0.00019 30.9 4.3 43 174-218 39-84 (86)
36 3kka_C Ephrin type-A receptor 67.9 6.4 0.00022 30.4 4.4 43 174-218 34-79 (86)
37 3k1r_B Usher syndrome type-1G 67.5 10 0.00035 28.4 5.3 45 173-222 18-62 (74)
38 2xhi_A N-glycosylase/DNA lyase 63.0 21 0.00071 34.1 7.9 129 131-291 133-276 (360)
39 2p5k_A Arginine repressor; DNA 62.8 8 0.00027 26.5 3.8 31 262-293 22-52 (64)
40 2qkq_A Ephrin type-B receptor 60.4 8.5 0.00029 29.0 3.8 46 174-221 28-76 (83)
41 2kg5_A ARF-GAP, RHO-GAP domain 60.2 8.2 0.00028 30.6 3.8 43 174-218 39-84 (100)
42 2ean_A Connector enhancer of k 57.9 17 0.00058 27.1 5.1 45 174-222 32-76 (83)
43 3sei_A Caskin-1; SAM domain, p 53.9 21 0.00072 29.8 5.5 46 175-222 93-141 (149)
44 3sei_A Caskin-1; SAM domain, p 52.0 14 0.00047 31.0 4.1 43 174-218 23-67 (149)
45 3bs5_B Connector enhancer of k 50.2 27 0.00092 25.7 5.0 44 174-221 28-71 (80)
46 2gle_A Neurabin-1; SAM domain, 47.5 43 0.0015 24.2 5.7 46 174-221 22-69 (74)
47 2lmr_A ODIN, ankyrin repeat an 46.3 11 0.00039 30.0 2.5 43 174-218 42-89 (101)
48 1oxj_A RNA-binding protein sma 46.0 21 0.00071 31.5 4.4 44 174-220 20-63 (173)
49 2lfe_A E3 ubiquitin-protein li 40.4 6.5 0.00022 33.5 0.3 25 36-60 14-44 (138)
50 2lc0_A Putative uncharacterize 40.2 9.6 0.00033 31.8 1.3 25 259-283 83-107 (132)
51 2ovk_B RLC, myosin regulatory 39.6 36 0.0012 26.0 4.5 61 173-240 15-75 (153)
52 2yvq_A Carbamoyl-phosphate syn 35.0 26 0.00088 28.8 3.1 32 260-291 37-68 (143)
53 2f3n_A SH3 and multiple ankyri 34.2 32 0.0011 25.3 3.2 45 175-221 21-67 (76)
54 2kiv_A Ankyrin repeat and ster 31.0 32 0.0011 28.5 3.0 42 175-218 28-74 (148)
55 3bs7_A Protein aveugle; sterIl 30.8 97 0.0033 22.4 5.4 47 175-223 24-72 (78)
56 2cme_A ORF-9B, ORF13, hypothet 30.7 11 0.00038 28.8 0.1 19 34-53 20-38 (78)
57 3j04_B Myosin regulatory light 29.8 17 0.00058 27.3 1.1 61 172-239 5-65 (143)
58 3bq7_A Diacylglycerol kinase d 28.9 83 0.0028 23.3 4.8 45 176-222 27-73 (81)
59 2lv7_A Calcium-binding protein 27.8 15 0.00052 28.0 0.5 44 174-217 36-79 (100)
60 2b1u_A Calmodulin-like protein 27.5 27 0.00092 23.2 1.7 37 173-209 5-41 (71)
61 2ktg_A Calmodulin, putative; e 27.0 24 0.00081 24.5 1.4 45 172-216 12-56 (85)
62 2p4g_A Hypothetical protein; p 26.9 45 0.0015 29.9 3.5 31 263-294 177-211 (270)
63 3gkx_A Putative ARSC family re 25.6 20 0.00069 28.6 0.8 45 160-207 51-97 (120)
64 1eh2_A EPS15; calcium binding, 25.4 23 0.0008 27.5 1.2 42 162-204 3-44 (106)
65 1k94_A Grancalcin; penta-EF-ha 25.2 33 0.0011 26.7 2.0 50 169-218 65-114 (165)
66 2ke7_A Ankyrin repeat and ster 24.3 1.2E+02 0.0041 23.6 5.1 46 174-221 35-85 (103)
67 1kdx_B CREB; complex (transcri 23.7 12 0.00042 24.0 -0.6 17 167-183 7-23 (28)
68 2jjz_A Ionized calcium-binding 22.9 47 0.0016 26.3 2.6 65 170-239 46-112 (150)
69 3fz4_A Putative arsenate reduc 22.5 22 0.00076 28.4 0.5 44 160-207 50-96 (120)
70 2mys_B Myosin; muscle protein, 21.8 37 0.0013 26.3 1.7 61 172-239 23-84 (166)
71 2azn_A HTP reductase, putative 21.8 64 0.0022 27.6 3.4 31 263-294 132-166 (219)
72 1lhs_A Myoglobin; oxygen stora 21.4 47 0.0016 27.0 2.3 45 174-219 27-75 (153)
73 2xw6_A MGS, methylglyoxal synt 21.4 59 0.002 27.1 2.9 32 260-291 16-50 (134)
74 4h62_V Mediator of RNA polymer 21.0 23 0.00078 22.8 0.2 16 187-202 5-20 (31)
75 2d58_A Allograft inflammatory 20.9 43 0.0015 24.7 1.8 64 171-239 29-94 (107)
76 1j7q_A CAVP, calcium vector pr 20.4 30 0.001 24.2 0.8 36 173-208 13-48 (86)
77 1juo_A Sorcin; calcium-binding 20.2 54 0.0019 26.5 2.4 50 168-217 97-146 (198)
No 1
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=100.00 E-value=8.9e-93 Score=633.29 Aligned_cols=184 Identities=38% Similarity=0.695 Sum_probs=180.4
Q ss_pred CccccCCccCChhhhhhhhcCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHh
Q 021174 120 LKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEI 199 (316)
Q Consensus 120 ~~RC~Wa~~~~~ly~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerL 199 (316)
|+||+|++ ++|+|++|||+|||+|+|||+.|||+||||||||||||.|||+||++||+||+||||++||+|+|+|||+|
T Consensus 1 m~RC~W~~-~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~L 79 (186)
T 2jg6_A 1 MNECAFGT-KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRL 79 (186)
T ss_dssp CTTTTTTC-CCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHHH
T ss_pred CCCCCCCC-CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHH
Confidence 57999997 57999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCccccchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccCh
Q 021174 200 SSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGP 279 (316)
Q Consensus 200 m~d~~IIRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGP 279 (316)
|+|++|||||+||+|||+|||++++|++|+|||++|||+||+++||+|.+.+..++|++||+|++|||+||||||+||||
T Consensus 80 l~d~gIIRnr~KI~A~i~NA~~~l~i~~e~gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkrGFkFvGp 159 (186)
T 2jg6_A 80 MTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGP 159 (186)
T ss_dssp TTCTTSCCCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTTTCCSCCH
T ss_pred hcCccchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHCCCeeech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhccccccccccccchh
Q 021174 280 VIVYSFMQAAGLTIDHLVDCFRYSE 304 (316)
Q Consensus 280 tt~ysfMQAvG~vnDHl~~C~r~~~ 304 (316)
|||||||||+||||||+++|+++.+
T Consensus 160 t~~YafmQA~G~vndH~~~C~~~~~ 184 (186)
T 2jg6_A 160 VTVFSFLEAAGLYDAHLKDCPSKPK 184 (186)
T ss_dssp HHHHHHHHHTTSEECCCTTCTTCCC
T ss_pred HHHHHHHHHhcccCccccCccccCC
Confidence 9999999999999999999998753
No 2
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=100.00 E-value=1e-91 Score=625.29 Aligned_cols=183 Identities=36% Similarity=0.777 Sum_probs=179.2
Q ss_pred CccccCCccCChhhhhhhhcCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHh
Q 021174 120 LKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEI 199 (316)
Q Consensus 120 ~~RC~Wa~~~~~ly~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerL 199 (316)
|+||+|++ ++|+|++|||+|||+|++||+.|||+||||||||||||.|||+||++||+||+||||++||+|+|+|||+|
T Consensus 1 ~~RC~W~~-~~ply~~YHD~EWG~P~~Dd~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~L 79 (183)
T 2ofk_A 1 MQRCDWVS-QDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVERL 79 (183)
T ss_dssp -CCCTTCC-SCHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHHH
T ss_pred CCCCCCCC-CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHHH
Confidence 46999997 57999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCccccchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccCh
Q 021174 200 SSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGP 279 (316)
Q Consensus 200 m~d~~IIRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGP 279 (316)
|+|++|||||+||+|||+|||++++|++|+|||++|||+||+++||+|.+.+..++|++||+|++|||+||||||+||||
T Consensus 80 l~d~~IIRnr~KI~A~i~NA~~~l~i~~e~Gsf~~ylW~fv~~~pi~~~~~~~~~vp~~t~~S~~lsk~LKkrGfkFvGp 159 (183)
T 2ofk_A 80 LQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGT 159 (183)
T ss_dssp TTCTTSCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTTTSCEECCCSSGGGSCSCCHHHHHHHHHHHHTTCCSCCH
T ss_pred hcCCcchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhcCCCCCccCCccchhhccCCCHHHHHHHHHHHhCCCeecCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhccccccccccccch
Q 021174 280 VIVYSFMQAAGLTIDHLVDCFRYS 303 (316)
Q Consensus 280 tt~ysfMQAvG~vnDHl~~C~r~~ 303 (316)
|||||||||+||||||+++|+++.
T Consensus 160 T~~yafmQA~G~VndH~~~C~~~~ 183 (183)
T 2ofk_A 160 TICYSFMQACGLVNDHITGCFCHP 183 (183)
T ss_dssp HHHHHHHHHTTSEECCCTTSTTCC
T ss_pred HHHHHHHHHcCcccCcccCCCCCC
Confidence 999999999999999999999863
No 3
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=97.45 E-value=0.00031 Score=63.54 Aligned_cols=106 Identities=15% Similarity=0.218 Sum_probs=82.4
Q ss_pred ChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcccc-chhhHHHHHHhHHHHHHH
Q 021174 147 DDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIML-AECRVRCIVDNAKCIVKI 225 (316)
Q Consensus 147 DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIR-nr~KI~AvI~NAra~l~i 225 (316)
.+.-.||.|+..++.+..+|..+.+-.+.+ |+.++.+++++|++++...| +| .+.|.+.++++|+.+
T Consensus 46 ~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L--------p~~l~~~~~eeL~~~Ir~~G-~Rf~~~KA~~I~~~a~~i--- 113 (219)
T 3n0u_A 46 TEEDLFCELSFCVLTANWSAEGGIRAQKEI--------GKGFVHLPLEELAEKLREVG-HRYPQKRAEFIVENRKLL--- 113 (219)
T ss_dssp CHHHHHHHHHHHHHTTTSCHHHHHHHHHHH--------TTHHHHCCHHHHHHHHHHTT-CSSHHHHHHHHHHHGGGT---
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhc-chHHHHHHHHHHHHHHHH---
Confidence 567789999999999999999998755555 78999999999999999888 56 789999999999876
Q ss_pred HHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhcc
Q 021174 226 LNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGL 291 (316)
Q Consensus 226 ~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQAvG~ 291 (316)
|+|.+.. ++ + ....-++|.+ .++-|||-|+..||.-.|.
T Consensus 114 ----g~l~~~~----~~-----------~-------~~~~r~~L~~-~l~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 114 ----GKLKNLV----KG-----------D-------PFQSREFLVR-NAKGIGWKEASHFLRNTGV 152 (219)
T ss_dssp ----TTHHHHH----HS-----------C-------HHHHHHHHHH-HSTTCCHHHHHHHHHTTTC
T ss_pred ----HHHHHHh----cC-----------C-------cHHHHHHHHH-hCCCCCHHHHHHHHHHcCC
Confidence 4554443 11 0 1123345552 3788999999999987776
No 4
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=96.18 E-value=0.054 Score=48.55 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHH
Q 021174 151 LFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIV 223 (316)
Q Consensus 151 LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l 223 (316)
.||.|+-+++-.-.+|..+.+-.+.|.++|- +|+.+|..++++|++++..-|+-| .|.+.++.=|+.+.
T Consensus 33 pfe~Lv~~IlsQqts~~~v~~~~~~l~~~fp--t~~~la~a~~~~l~~~i~~~G~~~--~KA~~l~~~a~~i~ 101 (226)
T 1orn_A 33 PFELLIAVVLSAQCTDALVNKVTKRLFEKYR--TPHDYIAVPLEELEQDIRSIGLYR--NKARNIQKLCAMLI 101 (226)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCC--SHHHHHSSCHHHHHHHTGGGSSHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCChH--HHHHHHHHHHHHHH
Confidence 5999999999999999999999999988874 899999999999999998878754 56667777777764
No 5
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=96.08 E-value=0.036 Score=49.42 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=78.6
Q ss_pred HHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHHHHhcC
Q 021174 151 LFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFG 230 (316)
Q Consensus 151 LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~G 230 (316)
.||.|+-+++-.-.+|..+.+-...|.+.| .+|+.||..++++|++++..-|.- +.|.+.++.=|+.+.+ ++|
T Consensus 35 pfe~lv~~IlsQqts~~~~~~~~~~l~~~f--ptp~~la~a~~e~l~~~i~~~G~~--~~KA~~l~~~a~~i~~---~~~ 107 (221)
T 1kea_A 35 PYVILITEILLRRTTAGHVKKIYDKFFVKY--KCFEDILKTPKSEIAKDIKEIGLS--NQRAEQLKELARVVIN---DYG 107 (221)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHHSCHHHHHHHTGGGSCH--HHHHHHHHHHHHHHHH---HHT
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHH---HhC
Confidence 799999999999999999999999998887 579999999999999999877764 5677788888887754 222
Q ss_pred CHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh
Q 021174 231 SFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA 289 (316)
Q Consensus 231 SF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQAv 289 (316)
+ ++|. .-++|. .++-|||.|+..+|.-+
T Consensus 108 g----------------------~~p~-------~~~~L~--~lpGIG~~TA~~il~~~ 135 (221)
T 1kea_A 108 G----------------------RVPR-------NRKAIL--DLPGVGKYTCAAVMCLA 135 (221)
T ss_dssp T----------------------SCCS-------CHHHHH--TSTTCCHHHHHHHHHHT
T ss_pred C----------------------CchH-------HHHHHH--hCCCCcHHHHHHHHHHh
Confidence 1 1231 113454 37889999988887644
No 6
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=95.72 E-value=0.045 Score=48.26 Aligned_cols=71 Identities=11% Similarity=0.162 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHH
Q 021174 150 QLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVK 224 (316)
Q Consensus 150 ~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~ 224 (316)
-.||.|+-+++-.-.+|..|.+-.+.|.+.| .+|+.+|..++++|++++..-|. .+.|.+.+++=|+.+.+
T Consensus 28 ~pfe~lv~~Il~qqts~~~v~~~~~~l~~~f--pt~~~la~a~~~~l~~~i~~~G~--~~~KA~~l~~~a~~~~~ 98 (211)
T 2abk_A 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLELGVEGVKTYIKTIGL--YNSKAENIIKTCRILLE 98 (211)
T ss_dssp SHHHHHHHHHHTTTSCHHHHHHHHHHHTTTC--CSHHHHHHHHHHHHHHHHTTSTT--HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH
Confidence 3799999999999999999988777665544 47999999999999999988787 46777888888887753
No 7
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=95.65 E-value=0.13 Score=48.23 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHH
Q 021174 148 DNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIV 223 (316)
Q Consensus 148 Dr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l 223 (316)
.+-.||.|+-+++-.-.+|.+|.+-...|.+.|- +++.+|..++++|++++.--|.- + |.+.+++=|+.+.
T Consensus 46 ~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~fp--tpe~La~a~~eel~~~ir~lG~~--~-KA~~L~~~A~~i~ 116 (287)
T 3n5n_X 46 DRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWP--TLQDLASASLEEVNQLWAGLGYY--S-RGRRLQEGARKVV 116 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--SHHHHHTSCHHHHHHHHTTSSCH--H-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCCH--H-HHHHHHHHHHHHH
Confidence 4678999999999999999999999999988875 89999999999999999988886 3 7788888888774
No 8
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=95.37 E-value=0.19 Score=44.70 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHHHHhc
Q 021174 150 QLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEF 229 (316)
Q Consensus 150 ~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~ 229 (316)
-.||.|+-+++-.-.+|..+.+-...|.+.| .+|+.+|..++++|++++.--|.- + |.+.++.=|+.+.+ ++
T Consensus 29 ~pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~--pt~~~la~~~~~~l~~~i~~~G~~--~-kA~~l~~~a~~i~~---~~ 100 (225)
T 1kg2_A 29 TPYKVWLSEVMLQQTQVATVIPYFERFMARF--PTVTDLANAPLDEVLHLWTGLGYY--A-RARNLHKAAQQVAT---LH 100 (225)
T ss_dssp CHHHHHHHHHHHTSSCHHHHHHHHHHHHHHC--SSHHHHHHSCHHHHHHHHTTSCCT--H-HHHHHHHHHHHHHH---HS
T ss_pred CHHHHHHHHHHHCcCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhCChH--H-HHHHHHHHHHHHHH---Hh
Confidence 3699999999999999999998777777766 379999999999999999888876 2 78888888887753 32
Q ss_pred CCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHH
Q 021174 230 GSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQA 288 (316)
Q Consensus 230 GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQA 288 (316)
|+ ++|. .-++|. .++-|||.|+..+|.-
T Consensus 101 ~g----------------------~~p~-------~~~~L~--~lpGIG~~TA~~il~~ 128 (225)
T 1kg2_A 101 GG----------------------KFPE-------TFEEVA--ALPGVGRSTAGAILSL 128 (225)
T ss_dssp TT----------------------SCCC-------SHHHHH--TSTTCCHHHHHHHHHH
T ss_pred CC----------------------CchH-------HHHHHh--cCCCCcHHHHHHHHHH
Confidence 21 1232 123454 3788999998888764
No 9
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=94.62 E-value=0.11 Score=45.75 Aligned_cols=112 Identities=12% Similarity=0.147 Sum_probs=81.8
Q ss_pred cChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHH
Q 021174 146 YDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKI 225 (316)
Q Consensus 146 ~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i 225 (316)
...+-.||.|+-++.-.-.+|..+.+-.+.+ ++.++..++++|++++..-|+=-.+.|.+.+.+-|+++.+.
T Consensus 28 ~~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L--------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~ 99 (207)
T 3fhg_A 28 SNEEVWFRELTLCLLTANSSFISAYQALNCL--------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGR 99 (207)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH--------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTT
T ss_pred CCcCCHHHHHHHHHHcCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999888877 58899999999999877655434678988888888866431
Q ss_pred HHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhcc
Q 021174 226 LNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGL 291 (316)
Q Consensus 226 ~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQAvG~ 291 (316)
-.|++..|- +- .| +..-++|. .++-|||-|+-.+|..+|.
T Consensus 100 --~~~~l~~~~-~~-------------------~~--~~~~~~L~--~lpGIG~kTA~~il~~~~~ 139 (207)
T 3fhg_A 100 --LKEEIKPLA-DE-------------------DQ--QLARERLL--NIKGIGMQEASHFLRNVGY 139 (207)
T ss_dssp --HHHHHHHHH-HH-------------------CH--HHHHHHHT--TSTTCCHHHHHHHHHHTTC
T ss_pred --hhhhHHHHh-CC-------------------CH--HHHHHHHH--cCCCcCHHHHHHHHHHhCC
Confidence 112333331 10 01 13445565 5899999999999987676
No 10
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=94.21 E-value=0.33 Score=43.20 Aligned_cols=107 Identities=20% Similarity=0.224 Sum_probs=78.2
Q ss_pred HHHHHHHHHhhccccHHHHHHhHHHHHHH-hcCCC----HHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHH
Q 021174 151 LFELLALSGMLMDYNWTEILKRKELFREA-FGGFD----PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKI 225 (316)
Q Consensus 151 LFE~L~LEgfQAGLSW~tILkKRe~fr~A-F~~FD----~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i 225 (316)
-||.|+-.+.-.-.+|..+.+-...+.++ |-..+ |+.++..++++|++++..-|.- +.|.+.++.=|+++.
T Consensus 30 pfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~--~~KA~~L~~~a~~i~-- 105 (218)
T 1pu6_A 30 KFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFY--NQKAKRLIDLSGNIL-- 105 (218)
T ss_dssp SHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCH--HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCCCc--HHHHHHHHHHHHHHH--
Confidence 58999999999999999999888888776 54322 9999999999999998877754 567777777777763
Q ss_pred HHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh
Q 021174 226 LNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA 289 (316)
Q Consensus 226 ~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQAv 289 (316)
+++|+|..+- +| ..-+.|. .++-|||-|+..+|.-+
T Consensus 106 -~~~~~l~~~~------------------~~-------~~~~~L~--~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 106 -KDFQSFENFK------------------QE-------VTREWLL--DQKGIGKESADAILCYA 141 (218)
T ss_dssp -HHHSSHHHHH------------------HH-------CCHHHHH--TSTTCCHHHHHHHHHHT
T ss_pred -HhcCChhhcc------------------ch-------HHHHHHH--cCCCcCHHHHHHHHHHH
Confidence 4567765320 01 1122344 47888888888887643
No 11
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=94.01 E-value=0.22 Score=44.66 Aligned_cols=130 Identities=16% Similarity=0.141 Sum_probs=89.6
Q ss_pred CChhhhhhhhcCCCc-cccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcccc
Q 021174 129 NNKVYVAFHDECWGV-PVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIML 207 (316)
Q Consensus 129 ~~~ly~~YHD~EWG~-Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIR 207 (316)
.+|.+..-.+..-|. +.....-.||.|+-.+.-.-.||..+.+-...|.+.|...+|+.|+..+++++.. +=-
T Consensus 38 ~D~~l~~l~~~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~Lr~------~G~ 111 (225)
T 2yg9_A 38 RDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDLRG------VGL 111 (225)
T ss_dssp TSHHHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHHHH------TTC
T ss_pred cCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHHHH------CCC
Confidence 356665544443343 3333345799999999999999999999999998888888999999999998832 223
Q ss_pred chhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHH
Q 021174 208 AECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQ 287 (316)
Q Consensus 208 nr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQ 287 (316)
.+.|.+.++.=|+++.+ ...+|+. ....| .+.+-+.|. .++-|||-|+-.+|.
T Consensus 112 ~~~KA~~i~~lA~~~~~---g~~~l~~-----------------l~~~~-----~~e~~~~L~--~l~GIG~~TA~~ill 164 (225)
T 2yg9_A 112 SWAKVRTVQAAAAAAVS---GQIDFAH-----------------LSGQP-----DELVIAELV--QLPGIGRWTAEMFLL 164 (225)
T ss_dssp CHHHHHHHHHHHHHHHT---TSSCGGG-----------------CTTSC-----HHHHHHHHH--TSTTCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh---CCcCHHH-----------------HhcCC-----HHHHHHHHH--cCCCCCHHHHHHHHH
Confidence 46788889888888753 1112221 11122 234455666 489999999988876
Q ss_pred Hh-cc
Q 021174 288 AA-GL 291 (316)
Q Consensus 288 Av-G~ 291 (316)
-+ |.
T Consensus 165 ~~lg~ 169 (225)
T 2yg9_A 165 FALAR 169 (225)
T ss_dssp HTSCC
T ss_pred HhCCC
Confidence 53 53
No 12
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=93.70 E-value=0.59 Score=44.23 Aligned_cols=72 Identities=19% Similarity=0.233 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHH
Q 021174 148 DNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVK 224 (316)
Q Consensus 148 Dr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~ 224 (316)
.+--||.|+-+++-.-.+|.+|.+-...|.+.| .+|+.+|..++++|++++.--|.- + |.+.++.=|+.+.+
T Consensus 36 ~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~--pt~~~la~a~~~~l~~~i~~~G~~--~-ra~~l~~~a~~~~~ 107 (369)
T 3fsp_A 36 DRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRF--PTLEALADADEDEVLKAWEGLGYY--S-RVRNLHAAVKEVKT 107 (369)
T ss_dssp CCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHTSCHHHHHHTTTTSSCT--H-HHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhccCcHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhcChH--H-HHHHHHHHHHHHHH
Confidence 344689999999999999999999888888887 589999999999999999888874 4 78888888888754
No 13
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=92.62 E-value=0.22 Score=44.74 Aligned_cols=129 Identities=12% Similarity=0.139 Sum_probs=88.9
Q ss_pred ChhhhhhhhcCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCC--CHHHHhcCCHHHHHHhhCCCcccc
Q 021174 130 NKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGF--DPKSVAKMGEKEILEISSNTAIML 207 (316)
Q Consensus 130 ~~ly~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~F--D~~~VA~~~e~dIerLm~d~~IIR 207 (316)
+|.+..-.+..-|.+.....-.||.|+-.+.-.-.||..+.+-...|.+.|..+ +|+.|+..++++|.. +=-
T Consensus 30 d~~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~Lr~------~G~ 103 (233)
T 2h56_A 30 DSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEALRQ------AGV 103 (233)
T ss_dssp CHHHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHHHH------TTC
T ss_pred CHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHHHH------cCC
Confidence 455544433333433333334799999999999999999999999999999877 999999999998822 223
Q ss_pred chhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHH
Q 021174 208 AECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQ 287 (316)
Q Consensus 208 nr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQ 287 (316)
.++|.+.++.=|+++.+ .+.++.... .+| .+..-++|. .++-|||-|+-.+|.
T Consensus 104 ~~~KA~~I~~~A~~i~~---~~~~~~~l~-----------------~~p-----~~~~~~~L~--~lpGIG~kTA~~ill 156 (233)
T 2h56_A 104 SKRKIEYIRHVCEHVES---GRLDFTELE-----------------GAE-----ATTVIEKLT--AIKGIGQWTAEMFMM 156 (233)
T ss_dssp CHHHHHHHHHHHHHHHT---TSSCHHHHT-----------------TSC-----HHHHHHHHH--TSTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh---CCCCHHHHh-----------------cCC-----HHHHHHHHH--hCCCcCHHHHHHHHH
Confidence 56788889888888743 222333211 112 123445665 488999999988876
Q ss_pred H-hcc
Q 021174 288 A-AGL 291 (316)
Q Consensus 288 A-vG~ 291 (316)
- .|.
T Consensus 157 ~alg~ 161 (233)
T 2h56_A 157 FSLGR 161 (233)
T ss_dssp HTTCC
T ss_pred HhCCC
Confidence 4 454
No 14
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=92.31 E-value=0.78 Score=41.15 Aligned_cols=129 Identities=11% Similarity=0.083 Sum_probs=89.1
Q ss_pred CChhhhhhhhcCCCcccc--ChH-HHHHHHHHHHhhccccHHHHHHhHHHHHHHh---cCC-CHHHHhcCCHHHHHHhhC
Q 021174 129 NNKVYVAFHDECWGVPVY--DDN-QLFELLALSGMLMDYNWTEILKRKELFREAF---GGF-DPKSVAKMGEKEILEISS 201 (316)
Q Consensus 129 ~~~ly~~YHD~EWG~Pv~--DDr-~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF---~~F-D~~~VA~~~e~dIerLm~ 201 (316)
.||.+..-.+..-|..+. ..+ -.||.|+-.+.-.-.||..+.+-...| +.| ..| +|+.|+..++++|.
T Consensus 25 ~Dp~l~~li~~~g~~r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~Lr---- 99 (228)
T 3s6i_A 25 LDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIMR---- 99 (228)
T ss_dssp SCHHHHHHHHHHCSCCCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHHH----
T ss_pred hChHHHHHHHHcCCCCCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHHH----
Confidence 356665555554444332 122 479999999999999999999999999 888 345 99999999999873
Q ss_pred CCccccchhhHHHHHHhHHHHHHHHHhcCCHH--HhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccCh
Q 021174 202 NTAIMLAECRVRCIVDNAKCIVKILNEFGSFS--SFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGP 279 (316)
Q Consensus 202 d~~IIRnr~KI~AvI~NAra~l~i~~e~GSF~--~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGP 279 (316)
.+=-.++|.+.++.=|+++.+ |.+. +.+-. .+ -+.+-+.|. .++-|||
T Consensus 100 --~~G~~~rKa~~i~~~A~~~~~-----g~~p~~~~l~~----------------~~-----~~e~~~~L~--~l~GIG~ 149 (228)
T 3s6i_A 100 --ACGFSARKIDSLKSIAEATIS-----GLIPTKEEAER----------------LS-----NEELIERLT--QIKGIGR 149 (228)
T ss_dssp --HHTCCHHHHHHHHHHHHHHHH-----TSSCCHHHHTT----------------SC-----HHHHHHHHT--TSTTCCH
T ss_pred --HcCCCHHHHHHHHHHHHHHHc-----CCCCChHHHhc----------------CC-----HHHHHHHHH--hCCCcCH
Confidence 233467789999988888752 4331 11111 11 134556665 4899999
Q ss_pred hhHHHHHH-Hhccc
Q 021174 280 VIVYSFMQ-AAGLT 292 (316)
Q Consensus 280 tt~ysfMQ-AvG~v 292 (316)
-|+-.+|. +.|..
T Consensus 150 ~TA~~ill~~lg~p 163 (228)
T 3s6i_A 150 WTVEMLLIFSLNRD 163 (228)
T ss_dssp HHHHHHHHHTSCCS
T ss_pred HHHHHHHHHhCCCC
Confidence 99988775 56653
No 15
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=91.46 E-value=0.73 Score=41.35 Aligned_cols=116 Identities=13% Similarity=0.172 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHHH
Q 021174 147 DDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKIL 226 (316)
Q Consensus 147 DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i~ 226 (316)
+.+-.||.|+..+.-+--+|..+.+--+.+. +.++..++++|++++..-|.=-.+.|-+-+++-|+ +
T Consensus 40 ~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~--------~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~-~---- 106 (214)
T 3fhf_A 40 SNEEWFKELCFCILTANFTAEGGIRIQKEIG--------DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARR-F---- 106 (214)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT--------THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGG-G----
T ss_pred CCCChHHHHHHHHHcCCCCHHHHHHHHHHHH--------HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH-h----
Confidence 5678999999999999999999998777774 56899999999999876662113345444444444 2
Q ss_pred HhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhccccccc-cccc
Q 021174 227 NEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHL-VDCF 300 (316)
Q Consensus 227 ~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQAvG~vnDHl-~~C~ 300 (316)
|.+-+.+-++ .++| ..-++|.+ .++-|||-|+..+|.-+|. ++-- +|-+
T Consensus 107 ---~~l~~~~~~~-------------~~~~-------~~re~Ll~-~LpGVG~KTA~~vL~~~g~-~~~~vVDth 156 (214)
T 3fhf_A 107 ---KNIKDIVESF-------------ENEK-------VAREFLVR-NIKGIGYKEASHFLRNVGY-DDVAIIDRH 156 (214)
T ss_dssp ---CCHHHHHHHS-------------SSHH-------HHHHHHHH-HSTTCCHHHHHHHHHHTTC-CSCCCCCHH
T ss_pred ---hHHHHHhccc-------------CCcH-------HHHHHHHH-hCCCCCHHHHHHHHHHcCC-CCcccCcHH
Confidence 2222222111 0111 22234441 3788999999999987776 4433 4433
No 16
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=89.44 E-value=0.57 Score=40.30 Aligned_cols=57 Identities=11% Similarity=0.058 Sum_probs=50.5
Q ss_pred HHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchh
Q 021174 152 FELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAEC 210 (316)
Q Consensus 152 FE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~ 210 (316)
|+.|+-+++-+=-+|.+|.+--+.|.+.|- +|+.+|..++++|+++..--|.-++|+
T Consensus 32 ~~vLVs~ILsqQT~~~~v~~~~~~l~~~~p--t~~~la~a~~~el~~~i~~lG~y~~KA 88 (161)
T 4e9f_A 32 WKLLIATIFLNRTSGKMAIPVLWKFLEKYP--SAEVARTADWRDVSELLKPLGLYDLRA 88 (161)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHSC--SHHHHTTSCHHHHHHHHGGGSCHHHHH
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHCC--CHHHHhccChHhHHhHhhhcCCHHHHH
Confidence 899999999999999999987777777765 899999999999999999888876653
No 17
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=87.68 E-value=2.1 Score=39.45 Aligned_cols=123 Identities=18% Similarity=0.231 Sum_probs=83.5
Q ss_pred ChhhhhhhhcCCCccccC--hHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcC-----------C-CHHHHhcCCHHH
Q 021174 130 NKVYVAFHDECWGVPVYD--DNQLFELLALSGMLMDYNWTEILKRKELFREAFGG-----------F-DPKSVAKMGEKE 195 (316)
Q Consensus 130 ~~ly~~YHD~EWG~Pv~D--Dr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~-----------F-D~~~VA~~~e~d 195 (316)
+|.+..-.+..-|.++.- ..-.||.|+-.+.-.-.||..+.+-...+.+.|.. | +|+.||..++++
T Consensus 95 D~~l~~l~~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~~ 174 (295)
T 2jhn_A 95 DEKLRMLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEG 174 (295)
T ss_dssp SHHHHHHHHHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHHHcCCHHH
Confidence 455544444444554443 44579999999999999999999999999999864 5 799999998888
Q ss_pred HHHhhCCCccccchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCc
Q 021174 196 ILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFR 275 (316)
Q Consensus 196 IerLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFk 275 (316)
+..+ | -.++|.+.++.=|++ |+|... ..+| . +.+-+.|. .++
T Consensus 175 Lr~~----G--~~~rKa~~i~~~A~~--------g~l~~l-----------------~~~~----~-~e~~~~L~--~lp 216 (295)
T 2jhn_A 175 LREC----G--LSRRKAELIVEIAKE--------ENLEEL-----------------KEWG----E-EEAYEYLT--SFK 216 (295)
T ss_dssp HHHT----T--CCHHHHHHHHHHHTC--------SSGGGG-----------------GGSC----H-HHHHHHHH--TST
T ss_pred HHHc----C--CCHHHHHHHHHHHHC--------CCHhhh-----------------hcCC----H-HHHHHHHh--cCC
Confidence 7321 2 356666666665554 444321 0112 1 34555666 489
Q ss_pred ccChhhHHHHHH-Hhc
Q 021174 276 LVGPVIVYSFMQ-AAG 290 (316)
Q Consensus 276 FVGPtt~ysfMQ-AvG 290 (316)
-|||-|+-.+|. +.|
T Consensus 217 GIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 217 GIGRWTAELVLSIALG 232 (295)
T ss_dssp TCCHHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHHHccC
Confidence 999999987766 456
No 18
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=87.21 E-value=2.8 Score=38.72 Aligned_cols=128 Identities=17% Similarity=0.136 Sum_probs=88.8
Q ss_pred ChhhhhhhhcCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcC-----------C-CHHHHhcCCHHHHH
Q 021174 130 NKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGG-----------F-DPKSVAKMGEKEIL 197 (316)
Q Consensus 130 ~~ly~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~-----------F-D~~~VA~~~e~dIe 197 (316)
+|.+..-.+.--|..+.. .-.||.|+-.+.-.-.||..+.+-...+.++|.. | +|+.||..+++++.
T Consensus 95 Dp~l~~~~~~~~glR~~~-~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L~ 173 (290)
T 3i0w_A 95 DPLLKKSVDFGEGIRILR-QDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFE 173 (290)
T ss_dssp SHHHHHHHHHTTTCCCCC-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHHH
T ss_pred CHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHHH
Confidence 455554444556666654 5589999999999999999999999999999764 5 99999999999998
Q ss_pred HhhCCCccccchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCccc
Q 021174 198 EISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLV 277 (316)
Q Consensus 198 rLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFV 277 (316)
++ ++= .|.+.++.=|+++.+ .+.++.... .. + -...-+.|. .++-|
T Consensus 174 ~~----g~g---~Ra~~I~~~A~~i~~---g~~~l~~l~-~~----------------~-----~~~~~~~L~--~lpGI 219 (290)
T 3i0w_A 174 EC----TAG---FRAKYLKDTVDRIYN---GELNLEYIK-SL----------------N-----DNECHEELK--KFMGV 219 (290)
T ss_dssp HT----TCG---GGHHHHHHHHHHHHT---TSSCHHHHH-HS----------------C-----HHHHHHHHT--TSTTC
T ss_pred Hc----CCc---hHHHHHHHHHHHHHh---CCCCHHHHh-cC----------------C-----HHHHHHHHH--hCCCc
Confidence 83 332 278888888887742 233443221 10 0 123445554 58889
Q ss_pred ChhhHHHHH-HHhccc
Q 021174 278 GPVIVYSFM-QAAGLT 292 (316)
Q Consensus 278 GPtt~ysfM-QAvG~v 292 (316)
||-|+-.+| .+.|..
T Consensus 220 G~~TA~~ill~~lg~p 235 (290)
T 3i0w_A 220 GPQVADCIMLFSMQKY 235 (290)
T ss_dssp CHHHHHHHHHHHHCCT
T ss_pred CHHHHHHHHHHhCCCC
Confidence 998887665 446653
No 19
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=87.03 E-value=2 Score=38.75 Aligned_cols=130 Identities=12% Similarity=0.071 Sum_probs=86.9
Q ss_pred ChhhhhhhhcCCCc--cccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcC---C-CHHHHhcCCHHHHHHhhCCC
Q 021174 130 NKVYVAFHDECWGV--PVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGG---F-DPKSVAKMGEKEILEISSNT 203 (316)
Q Consensus 130 ~~ly~~YHD~EWG~--Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~---F-D~~~VA~~~e~dIerLm~d~ 203 (316)
||.+..-.+..-|. |....+-.||.|+-.+.-.-.||..+.+-...|.++|.. | +|+.||..++++|.. -
T Consensus 37 Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~Lr~----~ 112 (232)
T 4b21_A 37 DNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHE----C 112 (232)
T ss_dssp CHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHHHT----T
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHHHHH----c
Confidence 45444444443342 222223469999999999999999999999999999975 5 999999999998743 3
Q ss_pred ccccchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHH
Q 021174 204 AIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVY 283 (316)
Q Consensus 204 ~IIRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~y 283 (316)
|+ .++|.+.++.=|+++.+ .+.+++.. +... | .+.+-++|.+ ++=|||-|+-
T Consensus 113 Gl--~~~Ka~~l~~~A~~~~~--g~~p~l~~-l~~~----------------~-----~~~~~~~L~~--l~GIG~~TA~ 164 (232)
T 4b21_A 113 GF--SKLKSQEIHIVAEAALN--KQIPSKSE-IEKM----------------S-----EEELMESLSK--IKGVKRWTIE 164 (232)
T ss_dssp TC--CHHHHHHHHHHHHHHHT--TCSCCHHH-HHHS----------------C-----HHHHHHHHTT--STTCCHHHHH
T ss_pred CC--cHHHHHHHHHHHHHHHh--CCCCCHHH-HHcC----------------C-----HHHHHHHHHh--CCCcCHHHHH
Confidence 44 56888888888888753 01112222 1111 1 1234456654 8899999998
Q ss_pred HHHHH-hcc
Q 021174 284 SFMQA-AGL 291 (316)
Q Consensus 284 sfMQA-vG~ 291 (316)
.+|.- .|-
T Consensus 165 ~ill~alg~ 173 (232)
T 4b21_A 165 MYSIFTLGR 173 (232)
T ss_dssp HHHHHTSCC
T ss_pred HHHHHhCCC
Confidence 77654 453
No 20
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=82.16 E-value=1.3 Score=33.54 Aligned_cols=43 Identities=9% Similarity=0.319 Sum_probs=33.7
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCccccchhhHHHHHHh
Q 021174 174 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDN 218 (316)
Q Consensus 174 e~fr~AF--~~FD-~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~N 218 (316)
+.|...| .||| .+.|+.++++|+.+|=-.. .-||+||.+.|..
T Consensus 25 ~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~--~ghrkkil~ai~~ 70 (78)
T 1v38_A 25 QEYTSTLLLNGYETLDDLKDIKESHLIELNIAD--PEDRARLLSAAES 70 (78)
T ss_dssp GGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence 5677777 7995 9999999999999874322 4699999876654
No 21
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=82.09 E-value=2.3 Score=33.71 Aligned_cols=47 Identities=6% Similarity=-0.019 Sum_probs=38.7
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHH
Q 021174 174 ELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCI 222 (316)
Q Consensus 174 e~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~ 222 (316)
.-|.+.|.+.+.+.+..|+|+|++++=-. ..-+|+||..+|+.-|..
T Consensus 31 hKY~~~F~~~~~~~l~~LtdedL~~~GVt--a~GaRrKil~aI~~lr~~ 77 (88)
T 2d3d_A 31 HKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDY 77 (88)
T ss_dssp GGGHHHHTTSCHHHHTTCCHHHHHHTTCC--CHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhcCCHHHHHHcCHHHHHHcCCc--cHhHHHHHHHHHHHHHHH
Confidence 45888899999999999999999997543 367999999988865554
No 22
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=80.68 E-value=3.2 Score=34.62 Aligned_cols=54 Identities=9% Similarity=0.088 Sum_probs=42.6
Q ss_pred HHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHH
Q 021174 166 WTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCI 222 (316)
Q Consensus 166 W~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~ 222 (316)
|..-|+ -.-|.+.|.+-+.+.+..++|+|++.+=-. -.-+|+||...|.--+..
T Consensus 55 WL~sLr-L~KY~~~F~~~~~d~l~~LTeeDL~~lGVt--a~GaRrKlL~AI~~Lr~~ 108 (119)
T 2b6g_A 55 WLKSLR-LHKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDY 108 (119)
T ss_dssp HHHHHT-CHHHHHHHTTSCHHHHTTCCHHHHHHHSCC--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHCC-ChhHHHHHccCCHHHHHhcCHHHHHHCCCC--ccccHHHHHHHHHHHHhh
Confidence 554433 367899999999999999999999997543 378999999888755554
No 23
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=79.92 E-value=2.8 Score=31.72 Aligned_cols=46 Identities=15% Similarity=0.362 Sum_probs=35.2
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHH
Q 021174 174 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKC 221 (316)
Q Consensus 174 e~fr~AF--~~FD-~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra 221 (316)
+.|...| .+|| .+.|+.++++|+.+|=-.. .-||+||...|..-+.
T Consensus 20 ~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~--~GhrkkIl~ai~~l~~ 68 (81)
T 1ucv_A 20 GRYRDHFAAGGYSSLGMVLRMNAQDVRALGITL--MGHQKKILGSIQTMRA 68 (81)
T ss_dssp GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCC--hhHHHHHHHHHHHHHH
Confidence 4566777 5688 8999999999999863321 4699999988877554
No 24
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=78.99 E-value=2.9 Score=32.64 Aligned_cols=43 Identities=19% Similarity=0.485 Sum_probs=33.2
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCccc--cchhhHHHHHHhHH
Q 021174 174 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIM--LAECRVRCIVDNAK 220 (316)
Q Consensus 174 e~fr~AF--~~FD-~~~VA~~~e~dIerLm~d~~II--Rnr~KI~AvI~NAr 220 (316)
+.|...| .+|| .+.|+.++++|+.+| ||- -||+||-..|..-|
T Consensus 38 ~qY~~~F~~~g~d~~e~l~~lt~~DL~~l----GIt~~GHRkkIL~ai~~Lr 85 (90)
T 3h8m_A 38 ERYKDNFTAAGYNSLESVARMTIEDVMSL----GITLVGHQKKIMSSIQTMR 85 (90)
T ss_dssp GGGHHHHHHTTCCSHHHHHTCCHHHHHHT----TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhCCHHHHHHC----CCCCHHHHHHHHHHHHHHH
Confidence 3455555 5788 999999999999887 554 59999998876543
No 25
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=78.16 E-value=4.4 Score=30.86 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=34.9
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHH
Q 021174 174 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKC 221 (316)
Q Consensus 174 e~fr~AF--~~FD-~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra 221 (316)
+.|...| .+|| .+.+..++++|+.+|=-.. +-||+||...|..-|.
T Consensus 29 ~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~--~GhRkkIl~ai~~Lr~ 77 (82)
T 2kso_A 29 QQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRL--PGHQKRIAYSLLGLKD 77 (82)
T ss_dssp TTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCC--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCC--hhHHHHHHHHHHHHHH
Confidence 4566666 4688 8999999999998874422 5699999988876553
No 26
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.58 E-value=1.4 Score=35.01 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=33.4
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCccccchhhHHHHHHh
Q 021174 174 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDN 218 (316)
Q Consensus 174 e~fr~AF--~~FD-~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~N 218 (316)
+.|.+.| .+|| .+.|+.++++|+.+|=-.. ..||+||.+.|..
T Consensus 36 ~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~--~gHrkkIl~ai~~ 81 (97)
T 2dl0_A 36 PMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITE--ERHIRKLLSAARL 81 (97)
T ss_dssp GGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCC--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 4567777 4688 7899999999999885422 5799999877754
No 27
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=74.50 E-value=4.5 Score=31.40 Aligned_cols=47 Identities=13% Similarity=0.392 Sum_probs=35.0
Q ss_pred HHHHHHh--cCC-CHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHH
Q 021174 174 ELFREAF--GGF-DPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCI 222 (316)
Q Consensus 174 e~fr~AF--~~F-D~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~ 222 (316)
+.|...| .+| |.+.+..++++|+.+|=-.. +-||+||...|..-+.-
T Consensus 39 ~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~--~GhrkkIl~ai~~L~~~ 88 (94)
T 1b0x_A 39 DRYKDNFTAAGYTTLEAVVHMSQDDLARIGITA--ITHQNKILSSVQAMRTQ 88 (94)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCC--hhHHHHHHHHHHHHHHH
Confidence 4566666 357 78999999999999874322 56999999888776543
No 28
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=74.34 E-value=8.8 Score=34.99 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=84.1
Q ss_pred CCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcC----------C-CHHHHhcCCHHHHHHhhCCCccccch
Q 021174 141 WGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGG----------F-DPKSVAKMGEKEILEISSNTAIMLAE 209 (316)
Q Consensus 141 WG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~----------F-D~~~VA~~~e~dIerLm~d~~IIRnr 209 (316)
-|..+....-.||.|+-.+.-.-.||..+.+-...|.++|.. | +|+.||..+++++.. +=-.+
T Consensus 103 ~glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~Lr~------~G~~~ 176 (282)
T 1mpg_A 103 PGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKA------LGMPL 176 (282)
T ss_dssp TTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHHHH------TTSCH
T ss_pred CCCcCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHHHHH------cCCCH
Confidence 344444444589999999999999999999999999998743 4 799999999998832 22336
Q ss_pred hhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHH-H
Q 021174 210 CRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQ-A 288 (316)
Q Consensus 210 ~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQ-A 288 (316)
.|.+.++.=|+++.+ |.+ +.. .+. + .+..-+.|.+ ++-|||-|+-.+|. +
T Consensus 177 ~ra~~i~~~A~~~~~-----~~~--------~~~-----------~~~--~-~~~~~~~L~~--lpGIG~~TA~~ill~~ 227 (282)
T 1mpg_A 177 KRAEALIHLANAALE-----GTL--------PMT-----------IPG--D-VEQAMKTLQT--FPGIGRWTANYFALRG 227 (282)
T ss_dssp HHHHHHHHHHHHHHH-----TCS--------CSS-----------CCS--C-HHHHHHHHTT--STTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-----CCC--------Ccc-----------ccC--C-HHHHHHHHhc--CCCcCHHHHHHHHHHh
Confidence 788888888888753 111 100 111 1 1234456654 88999999977765 5
Q ss_pred hcc-----cccccc
Q 021174 289 AGL-----TIDHLV 297 (316)
Q Consensus 289 vG~-----vnDHl~ 297 (316)
.|. |.||.+
T Consensus 228 lg~~d~~pvdd~~~ 241 (282)
T 1mpg_A 228 WQAKDVFLPDDYLI 241 (282)
T ss_dssp SCCSSCCCTTCHHH
T ss_pred CCCCCcCccccHHH
Confidence 563 456653
No 29
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=74.25 E-value=4.3 Score=33.04 Aligned_cols=46 Identities=7% Similarity=-0.014 Sum_probs=37.2
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHH
Q 021174 174 ELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKC 221 (316)
Q Consensus 174 e~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra 221 (316)
.-|.+.|.+-+.+.+..++|+|++++=-. ..-+|+||..+|..-|.
T Consensus 44 hKY~~~F~~~~~~~l~~LTdedL~~~GVt--a~GARrKiL~aI~~Lr~ 89 (101)
T 2es6_A 44 HKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVID 89 (101)
T ss_dssp CCTHHHHTTSCHHHHTTCCHHHHHHHTCC--SHHHHHHHHHHHHHHHH
T ss_pred cchHHHHccCCHHHHHhcCHHHHHHcCCc--cHhHHHHHHHHHHHHHH
Confidence 34778888889999999999999997543 36799999998885544
No 30
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=73.69 E-value=5 Score=30.15 Aligned_cols=47 Identities=17% Similarity=0.343 Sum_probs=34.5
Q ss_pred HHHHHh--cCC-CHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHH
Q 021174 175 LFREAF--GGF-DPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIV 223 (316)
Q Consensus 175 ~fr~AF--~~F-D~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l 223 (316)
.|...| .+| |.+.+..++++|+.+|=-. ..-||+||...|..-+.-.
T Consensus 25 ~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~--~~GhrkkIl~ai~~l~~~~ 74 (82)
T 1b4f_A 25 QYKESFANAGFTSFDVVSQMMMEDILRVGVT--LAGHQKKILNSIQVMRAQM 74 (82)
T ss_dssp GGHHHHHHTTCCSHHHHTTCCHHHHHHTTCC--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHhCCHHHHHHcCCC--CHHHHHHHHHHHHHHHHHH
Confidence 455555 467 7899999999999975322 1459999998888766543
No 31
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=73.08 E-value=2.5 Score=32.46 Aligned_cols=40 Identities=18% Similarity=0.398 Sum_probs=30.7
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCcc--ccchhhHHHHHH
Q 021174 174 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAI--MLAECRVRCIVD 217 (316)
Q Consensus 174 e~fr~AF--~~FD-~~~VA~~~e~dIerLm~d~~I--IRnr~KI~AvI~ 217 (316)
+.|.+.| .+|| .+.|+.++++|+.+| || +-||+||-..|.
T Consensus 36 ~qY~~~F~~~g~~s~e~l~~lt~~DL~~l----GIt~~GHRkkIL~aiq 80 (82)
T 3hil_A 36 KRYILHFHSAGLDTMECVLELTAEDLTQM----GITLPGHQKRILCSIQ 80 (82)
T ss_dssp GGGHHHHHHTTCCSGGGGTTCCHHHHHHT----TCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhcCCHHHHHHC----CCCCHHHHHHHHHHHH
Confidence 3455555 4788 899999999999877 44 459999987764
No 32
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=72.46 E-value=2.5 Score=32.85 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=32.3
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHH
Q 021174 174 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAK 220 (316)
Q Consensus 174 e~fr~AF--~~FD-~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAr 220 (316)
+.|.+.| .+|| .+.|+.++++|+.+|=-. ..-||+||...|..-+
T Consensus 28 ~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~--~~GHrkkIl~ai~~L~ 75 (91)
T 1x40_A 28 EQYLLHFHESGFTTVKDCAAINDSLLQKIGIS--PTGHRRRILKQLQIIL 75 (91)
T ss_dssp GGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCC--CHhHHHHHHHHHHHHH
Confidence 3455555 3674 789999999999987332 1579999987776543
No 33
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.98 E-value=3.7 Score=31.49 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=34.5
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHH
Q 021174 174 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCI 222 (316)
Q Consensus 174 e~fr~AF--~~FD-~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~ 222 (316)
+.|...| .+|| .+.+..|+++|+.+|=-.. +-||+||...|..-+.-
T Consensus 25 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~--~GhRkkIl~ai~~l~~~ 74 (88)
T 2e8n_A 25 QQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRL--PGHQKRIAYSLLGLKDQ 74 (88)
T ss_dssp GGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCC--hhHHHHHHHHHHHHHHh
Confidence 4455555 3688 8999999999998864322 46999999888775543
No 34
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.60 E-value=5.4 Score=31.23 Aligned_cols=44 Identities=18% Similarity=0.422 Sum_probs=32.3
Q ss_pred HHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHH
Q 021174 175 LFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAK 220 (316)
Q Consensus 175 ~fr~AF--~~FD-~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAr 220 (316)
.|...| .+|| .+.+..|+++|+.+|=-. .+-||+||...|..-+
T Consensus 36 ~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~--~~GhRkkIl~ai~~l~ 82 (99)
T 2eao_A 36 QYRDSFLTAGFTSLQLVTQMTSEDLLRIGIT--LAGHQKKILNSIHSMR 82 (99)
T ss_dssp GGHHHHHHHTCCBHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHhhCCHHHHHHCCCC--ChhHHHHHHHHHHHHH
Confidence 444555 3788 899999999999987332 1469999987776544
No 35
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=69.27 E-value=5.5 Score=30.91 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=32.5
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCccccchhhHHHHHHh
Q 021174 174 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDN 218 (316)
Q Consensus 174 e~fr~AF--~~FD-~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~N 218 (316)
+.|...| .+|| .+.|+.++++|+.+|=-. .+-||+||...|..
T Consensus 39 ~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt--~~GHRkkIL~aI~~ 84 (86)
T 2k4p_A 39 ERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQ--DPAHKRLLLDTLQL 84 (86)
T ss_dssp GGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCC--CHHHHHHHHHHHHH
Confidence 5677777 4674 899999999999987432 25699999877753
No 36
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=67.90 E-value=6.4 Score=30.44 Aligned_cols=43 Identities=19% Similarity=0.321 Sum_probs=32.0
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCccccchhhHHHHHHh
Q 021174 174 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDN 218 (316)
Q Consensus 174 e~fr~AF--~~FD-~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~N 218 (316)
+.|.+.| .+|| .+.|+.++++|+.+|=-. .+-||+||-..|..
T Consensus 34 ~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt--~~GHRkkIL~ai~~ 79 (86)
T 3kka_C 34 QQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVR--LPGHQKRIAYSLLG 79 (86)
T ss_dssp GGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCC--CHHHHHHHHHHHHH
Confidence 4455555 4688 899999999999987321 14599999887764
No 37
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=67.46 E-value=10 Score=28.39 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHH
Q 021174 173 KELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCI 222 (316)
Q Consensus 173 Re~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~ 222 (316)
.+.|.+ .++|.+.+..|+++|+.+|=-. +=+|+||...|..=|..
T Consensus 18 ~~~F~~--~~id~e~l~~lt~~DL~~lGI~---~G~RkkIl~ai~~~~~~ 62 (74)
T 3k1r_B 18 AALLRQ--EKIDLEALMLCSDLDLRSISVP---LGPREKILGAVRRRRQA 62 (74)
T ss_dssp HHHHHH--TTCCHHHHTTCCHHHHHHTTCC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--cCcCHHHHhHCCHHHHHHcCCC---cchHHHHHHHHHHHHHH
Confidence 456665 5789999999999999888664 56999999888655443
No 38
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=63.01 E-value=21 Score=34.08 Aligned_cols=129 Identities=18% Similarity=0.140 Sum_probs=83.1
Q ss_pred hhhhhhhhcCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcC------------C-CHHHHhcCCHHHHH
Q 021174 131 KVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGG------------F-DPKSVAKMGEKEIL 197 (316)
Q Consensus 131 ~ly~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~------------F-D~~~VA~~~e~dIe 197 (316)
|.+..-.+.--|..+.. .-.||.|+-.+...-.+|..+.+-...+.++|.. | +|+.||..+.++.
T Consensus 133 p~l~~l~~~~~glR~~~-~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~ee~- 210 (360)
T 2xhi_A 133 SHFQEVAQKFQGVRLLR-QDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAH- 210 (360)
T ss_dssp HHHHHHHHHSTTCCCCC-CCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHHHH-
T ss_pred HHHHHHHHHcCCCCCCC-CCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHHcCCHHHH-
Confidence 33333334445555544 4679999999999999999999999999998853 3 7999999865432
Q ss_pred HhhCCCccccchhhHHHHHHhHHHHHHHHHhcCC-HHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcc
Q 021174 198 EISSNTAIMLAECRVRCIVDNAKCIVKILNEFGS-FSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRL 276 (316)
Q Consensus 198 rLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~GS-F~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkF 276 (316)
+..-|+ + .|.+.++.=|+++. +++|+ ++ +-.. ..+| .+..-+.|. .++-
T Consensus 211 --Lr~~Gl-~--~RA~~I~~~A~~i~---~~~~G~~~--L~~l-------------~~~~-----~~~~~~~L~--~LpG 260 (360)
T 2xhi_A 211 --LRKLGL-G--YRARYVSASARAIL---EEQGGLAW--LQQL-------------RESS-----YEEAHKALC--ILPG 260 (360)
T ss_dssp --HHHTTC-T--THHHHHHHHHHHHH---HTTCTHHH--HHGG-------------GTSC-----HHHHHHHHT--TSTT
T ss_pred --HHHcCC-c--HHHHHHHHHHHHHH---hccCCccC--HHHH-------------hcCC-----HHHHHHHHH--hCCC
Confidence 233455 3 47888888888774 34432 11 1001 0112 123445565 4899
Q ss_pred cChhhHHHHHHH-hcc
Q 021174 277 VGPVIVYSFMQA-AGL 291 (316)
Q Consensus 277 VGPtt~ysfMQA-vG~ 291 (316)
|||-|+-.+|.- .|.
T Consensus 261 IGp~TA~~ill~alg~ 276 (360)
T 2xhi_A 261 VGTCVADKICLMALDK 276 (360)
T ss_dssp CCHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHhCCC
Confidence 999999877654 454
No 39
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=62.79 E-value=8 Score=26.50 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCcccChhhHHHHHHHhcccc
Q 021174 262 AEAISRDLLKRGFRLVGPVIVYSFMQAAGLTI 293 (316)
Q Consensus 262 S~~lsKdLKkrGFkFVGPtt~ysfMQAvG~vn 293 (316)
...|+..|+++|. -|+..|+|-.|...|++-
T Consensus 22 ~~el~~~l~~~~~-~vs~~Tv~R~L~~lg~v~ 52 (64)
T 2p5k_A 22 QDELVDMLKQDGY-KVTQATVSRDIKELHLVK 52 (64)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHhCC-CcCHHHHHHHHHHcCCEE
Confidence 5688999999986 589999999999999883
No 40
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=60.39 E-value=8.5 Score=28.95 Aligned_cols=46 Identities=20% Similarity=0.394 Sum_probs=33.4
Q ss_pred HHHHHHhc--CC-CHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHH
Q 021174 174 ELFREAFG--GF-DPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKC 221 (316)
Q Consensus 174 e~fr~AF~--~F-D~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra 221 (316)
+.|...|. +| |.+.+..++++|+.+|=-. .+-||+||...|..-|.
T Consensus 28 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~--~~GhrkkIl~ai~~l~~ 76 (83)
T 2qkq_A 28 GRYEESFAAAGFGSFELVSQISAEDLLRIGVT--LAGHQKKILASVQHMKS 76 (83)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCC--CHHHHHHHHHHHHHHHH
Confidence 45777774 54 7899999999999996332 15699999888776543
No 41
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=60.17 E-value=8.2 Score=30.60 Aligned_cols=43 Identities=14% Similarity=0.339 Sum_probs=32.3
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCccccchhhHHHHHHh
Q 021174 174 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDN 218 (316)
Q Consensus 174 e~fr~AF--~~FD-~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~N 218 (316)
+.|...| .+|| .+.+..++++|+.+|=-.. +-||+||...|..
T Consensus 39 ~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt~--~GhRkkIL~aI~~ 84 (100)
T 2kg5_A 39 EQYADTFRRHGLATAGAARGLGHEELKQLGISA--TGHRKRILRLLQT 84 (100)
T ss_dssp GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCChHHHHHhcCHHHHHHCCCCC--hhHHHHHHHHHHH
Confidence 3455555 4788 8999999999999874322 5699999877755
No 42
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.90 E-value=17 Score=27.08 Aligned_cols=45 Identities=9% Similarity=0.119 Sum_probs=33.8
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHH
Q 021174 174 ELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCI 222 (316)
Q Consensus 174 e~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~ 222 (316)
+.|++ ++.|-+.+..++++|+.+|--.. +-||.||...|..-+..
T Consensus 32 ~~F~~--~~I~G~~Ll~Lt~~dL~~LGI~~--~ghr~~il~~I~~L~~~ 76 (83)
T 2ean_A 32 KNFER--EKISGDQLLRITHQELEDLGVSR--IGHQELILEAVDLLCAL 76 (83)
T ss_dssp HHHHH--HTCCHHHHTTCCHHHHHHHTCCC--SHHHHHHHHHHHHHHHH
T ss_pred HHHHH--CCCCHHHHhhCCHHHHHHhCCCC--HHHHHHHHHHHHHHHHH
Confidence 44444 56788999999999998864432 67999999888776543
No 43
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=53.86 E-value=21 Score=29.85 Aligned_cols=46 Identities=9% Similarity=0.199 Sum_probs=33.9
Q ss_pred HHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHH
Q 021174 175 LFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCI 222 (316)
Q Consensus 175 ~fr~AF--~~FD-~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~ 222 (316)
.|...| .+|| .+.|..++++|+.+|=-.. .-||+||...|..-+.+
T Consensus 93 qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~--~gHr~kIl~ai~~l~~~ 141 (149)
T 3sei_A 93 QYYKVLVDNGYENIDFITDITWEDLQEIGITK--LGHQKKLMLAVRKLAEL 141 (149)
T ss_dssp GGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHCCCchHHHHhhCCHHHHHHCCCCC--HHHHHHHHHHHHHHHHH
Confidence 344455 5898 8999999999998763322 46999999888665554
No 44
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=52.03 E-value=14 Score=30.99 Aligned_cols=43 Identities=14% Similarity=0.334 Sum_probs=32.1
Q ss_pred HHHHHHhc--CCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHh
Q 021174 174 ELFREAFG--GFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDN 218 (316)
Q Consensus 174 e~fr~AF~--~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~N 218 (316)
+.|.+.|. +||.+.++.|+++|+.+|=-.. .-||+||...|..
T Consensus 23 ~~Y~~~F~~~g~d~~~l~~lt~~DL~~lGIt~--~gHrkkil~ai~~ 67 (149)
T 3sei_A 23 QLYAPNFISAGYDLPTISRMTPEDLTAIGVTK--PGHRKKIAAEISG 67 (149)
T ss_dssp GGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCS--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHccCCHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence 34556664 8999999999999998773321 3599999877755
No 45
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=50.17 E-value=27 Score=25.65 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=32.5
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHH
Q 021174 174 ELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKC 221 (316)
Q Consensus 174 e~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra 221 (316)
+.|++ ++.|-+.+..++++|+.+|--.. +-||.||...|..-+.
T Consensus 28 ~~F~~--~~i~G~~Ll~L~~~dL~~lGI~~--~ghr~~il~~I~~L~~ 71 (80)
T 3bs5_B 28 KNFER--EKISGDQLLRITHQELEDLGVSR--IGHQELILEAVDLLCA 71 (80)
T ss_dssp HHHHH--HTCCHHHHHTCCHHHHHHTTCCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHH--cCCCHHHHHHCCHHHHHHcCCCC--HHHHHHHHHHHHHHHH
Confidence 44544 56888999999999998764322 6799999877766543
No 46
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=47.46 E-value=43 Score=24.15 Aligned_cols=46 Identities=7% Similarity=0.177 Sum_probs=33.4
Q ss_pred HHHHHHh--cCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHH
Q 021174 174 ELFREAF--GGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKC 221 (316)
Q Consensus 174 e~fr~AF--~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra 221 (316)
+.|...| ++.|-+.+..++++|+.+|=-.. +-||.||...|..-|.
T Consensus 22 ~~y~~~F~~~~i~g~~Ll~l~~~dL~~lGI~~--~g~r~kil~~i~~L~~ 69 (74)
T 2gle_A 22 DQYVSEFSAQNISGEQLLQLDGNKLKALGMTS--SQDRALVKKKLKEMKM 69 (74)
T ss_dssp HHHHHHHTTTTCCHHHHHTCCHHHHHTTTCCC--HHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHcCCCHHHHhhCCHHHHHHcCCCC--HHHHHHHHHHHHHHHH
Confidence 4566677 45677999999999987643221 5699999988877654
No 47
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=46.27 E-value=11 Score=29.98 Aligned_cols=43 Identities=14% Similarity=0.265 Sum_probs=32.2
Q ss_pred HHHHHHh--cCCC-HHHHh--cCCHHHHHHhhCCCccccchhhHHHHHHh
Q 021174 174 ELFREAF--GGFD-PKSVA--KMGEKEILEISSNTAIMLAECRVRCIVDN 218 (316)
Q Consensus 174 e~fr~AF--~~FD-~~~VA--~~~e~dIerLm~d~~IIRnr~KI~AvI~N 218 (316)
+.|...| .+|| .+.|+ .++++|+.+|=-.. +-||+||...|..
T Consensus 42 ~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt~--~GHRkkIL~aI~~ 89 (101)
T 2lmr_A 42 QQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISD--PQHRRKLLQAARS 89 (101)
T ss_dssp GGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCCC--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 5677777 4576 67888 89999999874422 5699999877765
No 48
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=45.95 E-value=21 Score=31.54 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=36.8
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHH
Q 021174 174 ELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAK 220 (316)
Q Consensus 174 e~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAr 220 (316)
.-|...|.+.+.+.+..++|+|++++=-. . -+|+||...|..-|
T Consensus 20 hKY~~~F~~~~~e~~~~LTdedL~~~GVT--~-GARrKIL~aIq~Lr 63 (173)
T 1oxj_A 20 HKYIELFKNMTYEEMLLITEDFLQSVGVT--K-GASHKLALCIDKLK 63 (173)
T ss_dssp GGGGGGGTTCCHHHHTTCCHHHHHHTTCC--H-HHHHHHHHHHHHHH
T ss_pred chhHHHHccCCHHHHHhcCHHHHHHCCCc--h-HHHHHHHHHHHHHH
Confidence 45778899999999999999999998555 2 89999988887644
No 49
>2lfe_A E3 ubiquitin-protein ligase HECW2; structural genomics, northeast structural genomics consortiu SGC; NMR {Homo sapiens}
Probab=40.45 E-value=6.5 Score=33.51 Aligned_cols=25 Identities=44% Similarity=0.482 Sum_probs=6.3
Q ss_pred hcccccccccC------cccccccccccccC
Q 021174 36 VYPIGLHRSSS------SLSLSSLSLSLSQN 60 (316)
Q Consensus 36 ~yp~~~~~s~s------~~slss~s~slsqn 60 (316)
.+|+||+||+| +-|-|||+.|.+|-
T Consensus 14 ~~~~~l~Rs~SDtdLvt~~sRSsLt~S~~~y 44 (138)
T 2lfe_A 14 LYFQGLQRANSDTDLVTSESRSSLTASMYEY 44 (138)
T ss_dssp -------------------CCCEEEESCSEE
T ss_pred ccccccccccCccceecccccceeEEEeeEE
Confidence 68999999999 33456665554443
No 50
>2lc0_A Putative uncharacterized protein TB39.8; FHAA, kinase substrate, protein binding; NMR {Mycobacterium tuberculosis}
Probab=40.19 E-value=9.6 Score=31.81 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHcCCcccChhhHH
Q 021174 259 SPKAEAISRDLLKRGFRLVGPVIVY 283 (316)
Q Consensus 259 t~~S~~lsKdLKkrGFkFVGPtt~y 283 (316)
.++++.+.+....+||.|+||++|.
T Consensus 83 ~el~~~l~~~a~~qgy~~~G~v~V~ 107 (132)
T 2lc0_A 83 TGFARDLADYIQEQGWQTYGDVVVR 107 (132)
T ss_dssp HHHHHHHHHHHHHHTCBCSSCCEEE
T ss_pred HHHHHHHHHHHHHCCCeecCCeEEE
Confidence 4677788888889999999999875
No 51
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=39.60 E-value=36 Score=25.99 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=47.0
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHHHHhcCCHHHhccccC
Q 021174 173 KELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYV 240 (316)
Q Consensus 173 Re~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv 240 (316)
...++++|..||.+.=-.++.+++..+|..-++--....|..++... ...-+|.+|+-.+.
T Consensus 15 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~-------~g~i~~~eF~~~~~ 75 (153)
T 2ovk_B 15 MQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC-------PGQLNFTAFLTLFG 75 (153)
T ss_dssp HHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHHS-------SSCCCSHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHHc-------CCCCCHHHHHHHHH
Confidence 36788999999998888899999999998877777777777777654 22237888876553
No 52
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=35.02 E-value=26 Score=28.83 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHcCCcccChhhHHHHHHHhcc
Q 021174 260 PKAEAISRDLLKRGFRLVGPVIVYSFMQAAGL 291 (316)
Q Consensus 260 ~~S~~lsKdLKkrGFkFVGPtt~ysfMQAvG~ 291 (316)
+....+++.|.+.||+++..-..+.||+..|+
T Consensus 37 ~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi 68 (143)
T 2yvq_A 37 PRFLGVAEQLHNEGFKLFATEATSDWLNANNV 68 (143)
T ss_dssp HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCEEEECchHHHHHHHcCC
Confidence 45667999999999999988888999999985
No 53
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=34.24 E-value=32 Score=25.27 Aligned_cols=45 Identities=7% Similarity=0.163 Sum_probs=31.5
Q ss_pred HHHHHh--cCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHH
Q 021174 175 LFREAF--GGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKC 221 (316)
Q Consensus 175 ~fr~AF--~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra 221 (316)
.|.+.| .+.|-..+..++++|+.+|=-.. +-+|.||...|..-+.
T Consensus 21 ~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~--~Ghr~kIl~aI~~l~~ 67 (76)
T 2f3n_A 21 EHRDRFEDHEIEGAHLPALTKEDFVELGVTR--VGHRENIERALRQLDG 67 (76)
T ss_dssp GGHHHHHHTTCCGGGGGGCCHHHHHHTTCCC--HHHHHHHHHHHHTC--
T ss_pred HHHHHHHHcCCCHHHHccCCHHHHHHcCCCC--hhHHHHHHHHHHHHHH
Confidence 355555 46777899999999997664321 4699999888876544
No 54
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=31.03 E-value=32 Score=28.52 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=30.4
Q ss_pred HHHHHh--cCCCH-HHHh--cCCHHHHHHhhCCCccccchhhHHHHHHh
Q 021174 175 LFREAF--GGFDP-KSVA--KMGEKEILEISSNTAIMLAECRVRCIVDN 218 (316)
Q Consensus 175 ~fr~AF--~~FD~-~~VA--~~~e~dIerLm~d~~IIRnr~KI~AvI~N 218 (316)
.|.+.| .+||- +.|+ .|+++|+.+|=-.. .-||+||...|..
T Consensus 28 ~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~--~ghRkkil~ai~~ 74 (148)
T 2kiv_A 28 QYENHLMANGFDNVQAMGSNVMEDQDLLEIGILN--SGHRQRILQAIQL 74 (148)
T ss_dssp TSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSS--TTSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 455666 57876 6676 99999999774432 4599999877764
No 55
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=30.78 E-value=97 Score=22.43 Aligned_cols=47 Identities=2% Similarity=0.099 Sum_probs=34.2
Q ss_pred HHHHHh--cCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHH
Q 021174 175 LFREAF--GGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIV 223 (316)
Q Consensus 175 ~fr~AF--~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l 223 (316)
.|...| ++.|-+.+..++++|+.+|--.. +-||.||...|..-|.-.
T Consensus 24 ~y~~~F~~~~I~G~~Ll~L~~~dL~~lGI~~--~g~r~~il~~I~~Lr~~~ 72 (78)
T 3bs7_A 24 QYEQLFAQHDITGRALLRITDSSLQRMGVTD--NRDREAIWREIVKQRLKT 72 (78)
T ss_dssp GGHHHHHHTTCCHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHhhCCHHHHhHcCCCC--HHHHHHHHHHHHHHHhHH
Confidence 355555 56788999999999998864332 678999988777655443
No 56
>2cme_A ORF-9B, ORF13, hypothetical protein 5; alternative open reading frame, lipid-binding, virus assembly; HET: D10; 2.8A {Human sars coronavirus} SCOP: b.164.1.1 PDB: 2cme_B* 2cme_E* 2cme_C*
Probab=30.68 E-value=11 Score=28.79 Aligned_cols=19 Identities=63% Similarity=0.716 Sum_probs=14.4
Q ss_pred chhcccccccccCccccccc
Q 021174 34 KKVYPIGLHRSSSSLSLSSL 53 (316)
Q Consensus 34 ~~~yp~~~~~s~s~~slss~ 53 (316)
-|||||-| |=.|.||||-+
T Consensus 20 ~kvypiil-rlgs~lslsm~ 38 (78)
T 2cme_A 20 PKVYPIIL-RLGSNLSLSMA 38 (78)
T ss_dssp CCEEEEEE-CCSSCCEEEEE
T ss_pred Cceeeeee-eeccccchHHH
Confidence 37999965 67788887765
No 57
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=29.81 E-value=17 Score=27.35 Aligned_cols=61 Identities=11% Similarity=0.189 Sum_probs=41.6
Q ss_pred hHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHHHHhcCCHHHhcccc
Q 021174 172 RKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 239 (316)
Q Consensus 172 KRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsf 239 (316)
....++++|..||.+.=-.++.+++..+|..-++--....|..++.. ....-+|.+|+-.+
T Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~-------~~g~i~~~eF~~~~ 65 (143)
T 3j04_B 5 QIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE-------APGPINFTMFLTMF 65 (143)
T ss_dssp HHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTTTT-------SSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHh-------CCCCcCHHHHHHHH
Confidence 35678999999999887888899998888766665555556555544 11112577766444
No 58
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=28.86 E-value=83 Score=23.26 Aligned_cols=45 Identities=7% Similarity=0.252 Sum_probs=32.2
Q ss_pred HHHHh--cCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHH
Q 021174 176 FREAF--GGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCI 222 (316)
Q Consensus 176 fr~AF--~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~ 222 (316)
|...| .++|-..+..++++|+.+|--.+ +-+|.||...|..-+..
T Consensus 27 Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~--~ghr~kIl~aI~~L~~~ 73 (81)
T 3bq7_A 27 YKDIFTRHDIRGSGLLHLERRDLKDLGVTK--VGHMKRILCGIKELSRS 73 (81)
T ss_dssp GHHHHHHTTCCHHHHTTCCHHHHHHTTCCC--HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCCHHHHCcCCHHHHhHcCCCC--HHHHHHHHHHHHHHHHH
Confidence 44555 45788899999999998853322 56999998888765543
No 59
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=27.77 E-value=15 Score=27.98 Aligned_cols=44 Identities=25% Similarity=0.321 Sum_probs=35.1
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHH
Q 021174 174 ELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVD 217 (316)
Q Consensus 174 e~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~ 217 (316)
+.+++||.-||.+.=-..+-+++..+|..-|+--....|+.++.
T Consensus 36 ~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 36 EEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp HHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45789999999999888999999999887666666666666553
No 60
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=27.45 E-value=27 Score=23.20 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccch
Q 021174 173 KELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAE 209 (316)
Q Consensus 173 Re~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr 209 (316)
.+.++++|..||.+.=-.++.+++..++..-+.--..
T Consensus 5 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~ 41 (71)
T 2b1u_A 5 LEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQ 41 (71)
T ss_dssp HHHHHHHHTTSCCSSSSEEEHHHHHHHGGGTTCSSCH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCH
Confidence 4678999999999877788899999988765543333
No 61
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=26.96 E-value=24 Score=24.54 Aligned_cols=45 Identities=20% Similarity=0.283 Sum_probs=33.5
Q ss_pred hHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHH
Q 021174 172 RKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIV 216 (316)
Q Consensus 172 KRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI 216 (316)
....++++|..||.+.=-.++.+++..++..-++--+...+..++
T Consensus 12 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 56 (85)
T 2ktg_A 12 EQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIV 56 (85)
T ss_dssp HHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 356789999999988777788899999887766555555555444
No 62
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=26.93 E-value=45 Score=29.94 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCc----ccChhhHHHHHHHhccccc
Q 021174 263 EAISRDLLKRGFR----LVGPVIVYSFMQAAGLTID 294 (316)
Q Consensus 263 ~~lsKdLKkrGFk----FVGPtt~ysfMQAvG~vnD 294 (316)
..+-+.|+++|.+ ..|++++-+||++ |+|+-
T Consensus 177 ~~~l~~L~~~g~~~vlvEGG~~l~~sfL~a-gLVDE 211 (270)
T 2p4g_A 177 KIAFDALHARRLKKISIEGGPSVYRQALSL-GIVDR 211 (270)
T ss_dssp HHHHHHHHTTTCCEEEEEECHHHHHHHHHH-TCCCE
T ss_pred HHHHHHHHHCCCCEEEEecCHHHHHHHHHC-CCCeE
Confidence 3566789999998 5699999999876 88874
No 63
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=25.57 E-value=20 Score=28.63 Aligned_cols=45 Identities=11% Similarity=0.233 Sum_probs=31.2
Q ss_pred hhccccHHHHHHhHHHHHHHhcCCCH-HHHhcCCHHHHHH-hhCCCcccc
Q 021174 160 MLMDYNWTEILKRKELFREAFGGFDP-KSVAKMGEKEILE-ISSNTAIML 207 (316)
Q Consensus 160 fQAGLSW~tILkKRe~fr~AF~~FD~-~~VA~~~e~dIer-Lm~d~~IIR 207 (316)
-+.|+.|..++++|..- |...+. ++++.++++++-+ |+++|.+|+
T Consensus 51 ~~~g~~~~~l~n~~~~~---~k~l~l~~k~~~ls~~~~~~lm~~~p~Lik 97 (120)
T 3gkx_A 51 PLSGLPVKKFFNTSGVV---YKELKLSSKLPTMTEEEQIALLATNGKLVK 97 (120)
T ss_dssp HHHTSCGGGGBCTTSHH---HHHTTHHHHGGGSCHHHHHHHHTTCGGGBC
T ss_pred HHcCCCHHHeEeCCCch---hhhcCcchhcccCCHHHHHHHHHhChhheE
Confidence 45788999999988642 223333 4567889888755 557888876
No 64
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=25.42 E-value=23 Score=27.52 Aligned_cols=42 Identities=12% Similarity=0.246 Sum_probs=30.3
Q ss_pred ccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCc
Q 021174 162 MDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTA 204 (316)
Q Consensus 162 AGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~ 204 (316)
.|..|..--..+..|+++|.-||. .=-..+-+++..+|..-+
T Consensus 3 ~~~~w~ls~~e~~~~~~~F~~~D~-~dG~Is~~el~~~l~~~g 44 (106)
T 1eh2_A 3 WGSPWAVKPEDKAKYDAIFDSLSP-VNGFLSGDKVKPVLLNSK 44 (106)
T ss_dssp ---CCSSCHHHHHHHHHHHTTSCC-SSSCCBHHHHHHHHHTTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCC-CCCeEcHHHHHHHHHHcC
Confidence 355566545677889999999998 555678888888887655
No 65
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=25.19 E-value=33 Score=26.73 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=37.0
Q ss_pred HHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHh
Q 021174 169 ILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDN 218 (316)
Q Consensus 169 ILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~N 218 (316)
++.+.+.++++|..||.+.=-.++.+++..++..-+.--....+..++..
T Consensus 65 ~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 114 (165)
T 1k94_A 65 LWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKR 114 (165)
T ss_dssp HHHHHHHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCceECHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 33445789999999999888889999999988765554455556655543
No 66
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}
Probab=24.32 E-value=1.2e+02 Score=23.60 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=31.5
Q ss_pred HHHHHHh--cCCCH-HHH--hcCCHHHHHHhhCCCccccchhhHHHHHHhHHH
Q 021174 174 ELFREAF--GGFDP-KSV--AKMGEKEILEISSNTAIMLAECRVRCIVDNAKC 221 (316)
Q Consensus 174 e~fr~AF--~~FD~-~~V--A~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra 221 (316)
+.|.+.| .+||- +.| ..|+++|+.+|=-.. .-||+||...|..-+.
T Consensus 35 ~qY~~~F~~~gid~~~~l~~~~lt~~DL~~lGI~~--~GhRkkIl~ai~~L~~ 85 (103)
T 2ke7_A 35 PQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILN--SGHRQRILQAIQLLPK 85 (103)
T ss_dssp TTCHHHHHHTTCCCHHHHHTTCCCHHHHHHHTCCC--HHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCCcHHHHhcccCCHHHHhHCCCCC--HHHHHHHHHHHHHHHh
Confidence 4455555 56764 446 699999999873322 5799999877766543
No 67
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=23.65 E-value=12 Score=24.02 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=14.5
Q ss_pred HHHHHhHHHHHHHhcCC
Q 021174 167 TEILKRKELFREAFGGF 183 (316)
Q Consensus 167 ~tILkKRe~fr~AF~~F 183 (316)
..||.+|+.||..|.+|
T Consensus 7 r~iL~rrpSYrkIlndl 23 (28)
T 1kdx_B 7 REILSRRPSYRKILNDL 23 (28)
T ss_dssp HHHHTTSTHHHHHHHHH
T ss_pred hhhhhcCchHHHHHHhh
Confidence 46899999999998765
No 68
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=22.89 E-value=47 Score=26.28 Aligned_cols=65 Identities=9% Similarity=0.162 Sum_probs=44.4
Q ss_pred HHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHHHHhcC--CHHHhcccc
Q 021174 170 LKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFG--SFSSFMWGY 239 (316)
Q Consensus 170 LkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~G--SF~~ylWsf 239 (316)
-...+.++++|..||.+.=-.++-+++..+|..-+.--....|..++..+ +. ...| +|.+|+--+
T Consensus 46 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~~~----D~-d~dg~I~~~eF~~~~ 112 (150)
T 2jjz_A 46 PEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEV----TG-GVSDTISYRDFVNMM 112 (150)
T ss_dssp HHHHHHHHHHHTTSCCCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH----HT-TSCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHH----CC-CCCCcEeHHHHHHHH
Confidence 35677899999999998888889999999887666544555555554322 11 1123 788887544
No 69
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=22.54 E-value=22 Score=28.39 Aligned_cols=44 Identities=7% Similarity=0.143 Sum_probs=31.4
Q ss_pred hhccccHHHHHHhHHH-HHHHhcCCCH-HHHhcCCHHHHH-HhhCCCcccc
Q 021174 160 MLMDYNWTEILKRKEL-FREAFGGFDP-KSVAKMGEKEIL-EISSNTAIML 207 (316)
Q Consensus 160 fQAGLSW~tILkKRe~-fr~AF~~FD~-~~VA~~~e~dIe-rLm~d~~IIR 207 (316)
-+.|+.|..++++|.. |++ -+. ++++.++++++- .|+++|.+|+
T Consensus 50 ~~~g~~~~~l~n~~~~~~k~----l~l~~~~~~ls~~~~~~lm~~~p~Lik 96 (120)
T 3fz4_A 50 ENSGLELKKFFNTSGQSYRA----LGLKDKLHQLSLDEAANLLASDGMLIK 96 (120)
T ss_dssp HHSCCCGGGGBCTTSHHHHH----TTHHHHGGGCCHHHHHHHHHHCGGGBC
T ss_pred HHcCCCHHHHhCCCCcchhh----cCcccccccCCHHHHHHHHHhChheEe
Confidence 4678999999998864 443 333 456788888764 5558888876
No 70
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=21.82 E-value=37 Score=26.31 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=42.1
Q ss_pred hHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcc-ccchhhHHHHHHhHHHHHHHHHhcCCHHHhcccc
Q 021174 172 RKELFREAFGGFDPKSVAKMGEKEILEISSNTAI-MLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 239 (316)
Q Consensus 172 KRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~I-IRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsf 239 (316)
....++++|..||.+.=-.++.+++..++..-++ --....|..++.+. ...-+|.+|+-.+
T Consensus 23 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~-------dg~i~~~eF~~~~ 84 (166)
T 2mys_B 23 EIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEA-------SGPINFTVFLTMF 84 (166)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHC-------CCCcCHHHHHHHH
Confidence 3467899999999888778899999988876665 44555666666542 1122677777544
No 71
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=21.82 E-value=64 Score=27.58 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCc----ccChhhHHHHHHHhccccc
Q 021174 263 EAISRDLLKRGFR----LVGPVIVYSFMQAAGLTID 294 (316)
Q Consensus 263 ~~lsKdLKkrGFk----FVGPtt~ysfMQAvG~vnD 294 (316)
.++-+.|+++|.+ ..|++++-+||++ |+|+-
T Consensus 132 ~~~l~~L~~~g~~~ilveGG~~l~~s~l~~-gLvDe 166 (219)
T 2azn_A 132 KKLMDILYDKGIKSILLEGGGTLNWGMFKE-GLVDE 166 (219)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHHHHHHT-TCCCE
T ss_pred HHHHHHHHHcCCCEEEEeeCHHHHHHHHHC-CCCcE
Confidence 3567889999988 3599999999765 88864
No 72
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=21.40 E-value=47 Score=27.03 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=32.7
Q ss_pred HHHHHHhcCCCHHHHhcCCH----HHHHHhhCCCccccchhhHHHHHHhH
Q 021174 174 ELFREAFGGFDPKSVAKMGE----KEILEISSNTAIMLAECRVRCIVDNA 219 (316)
Q Consensus 174 e~fr~AF~~FD~~~VA~~~e----~dIerLm~d~~IIRnr~KI~AvI~NA 219 (316)
+.|.+.|..+ |+.-..|+. ...+.|+.|+.+-.|..||...+..+
T Consensus 27 ~~~~rlF~~~-P~~k~~F~~f~~~~~~~~l~~n~~~~~h~~~v~~al~~~ 75 (153)
T 1lhs_A 27 EVIIRLFQLH-PETQERFAKFKNLTTIDALKSSEEVKKHGTTVLTALGRI 75 (153)
T ss_dssp HHHHHHHHHC-HHHHTTCGGGTTCCSHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-hhHHHHhHhhcCCCcHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4556666655 666666642 25788999999999999998887765
No 73
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=21.36 E-value=59 Score=27.13 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHc--CCcccChhhHHHHHHH-hcc
Q 021174 260 PKAEAISRDLLKR--GFRLVGPVIVYSFMQA-AGL 291 (316)
Q Consensus 260 ~~S~~lsKdLKkr--GFkFVGPtt~ysfMQA-vG~ 291 (316)
+....+++.++.. ||+.+..-+...+|+. .|+
T Consensus 16 ~~~v~~a~~~~~ll~Gf~l~AT~gTa~~L~e~~Gl 50 (134)
T 2xw6_A 16 EEMVAFCQRHREVLARFPLVATGTTGRRIEEATGL 50 (134)
T ss_dssp HHHHHHHHHTHHHHTTSCEEECHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCCCEEEEccHHHHHHHHhhCc
Confidence 5677899999999 9999999999999998 896
No 74
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=21.00 E-value=23 Score=22.80 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=9.3
Q ss_pred HHhcCCHHHHHHhhCC
Q 021174 187 SVAKMGEKEILEISSN 202 (316)
Q Consensus 187 ~VA~~~e~dIerLm~d 202 (316)
-|..|+|.+||+|+.|
T Consensus 5 gvtrfdekqieelldn 20 (31)
T 4h62_V 5 GVTRFDEKQIEELLDN 20 (31)
T ss_dssp -----CHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHH
Confidence 3678899999998864
No 75
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=20.86 E-value=43 Score=24.73 Aligned_cols=64 Identities=11% Similarity=0.190 Sum_probs=41.6
Q ss_pred HhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHHHHhcC--CHHHhcccc
Q 021174 171 KRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFG--SFSSFMWGY 239 (316)
Q Consensus 171 kKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~G--SF~~ylWsf 239 (316)
...+.++++|..||.+.=-..+.+++..++..-+.--....+..++..+ +. ...| +|.+|+--+
T Consensus 29 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~----D~-d~dg~i~~~eF~~~~ 94 (107)
T 2d58_A 29 SKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEV----SS-GSGETFSYPDFLRMM 94 (107)
T ss_dssp HHHHHHHHHHTTSCCCTTSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHH----CS-SSSSEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh----CC-CCCCeEcHHHHHHHH
Confidence 3457799999999998877888999998887655544444554443321 00 1123 688877544
No 76
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=20.40 E-value=30 Score=24.21 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccc
Q 021174 173 KELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLA 208 (316)
Q Consensus 173 Re~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRn 208 (316)
...++++|..||.+.=-..+.+++..++..-+.--.
T Consensus 13 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~ 48 (86)
T 1j7q_A 13 KDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYT 48 (86)
T ss_dssp HHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCS
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCC
Confidence 456899999999988778899999888876554333
No 77
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=20.23 E-value=54 Score=26.53 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=36.1
Q ss_pred HHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHH
Q 021174 168 EILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVD 217 (316)
Q Consensus 168 tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~ 217 (316)
.++.+.+.++++|..||.+.=-.++.+++.+++..-+.--....+..++.
T Consensus 97 ~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~ 146 (198)
T 1juo_A 97 ELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 146 (198)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34455688999999999988778899999988876554444445554443
Done!