BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021175
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
SA ++ LG ++ Y A +Y +A+E D + A+ + LG +Y ++G D+ I
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
++ A++L P AW NLG+AY K+ D A++ +++ L DPNN A+
Sbjct: 64 EYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
+A ++ LG ++ Y A +Y +A+E D + A+ + LG +Y ++G D+ I
Sbjct: 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAI 97
Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKK 269
++ A++L P A NLG+A +K+
Sbjct: 98 EYYQKALELDPNNAEAKQNLGNAKQKQ 124
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
SA ++ LG ++ Y A +Y +A+E + + A+ + LG +Y ++G D+ I
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN----AEAWYNLGNAYYKQGDYDEAI 63
Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
++ A++L P AW NLG+AY K+ D A++ +++ L PNN A+
Sbjct: 64 EYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAK 114
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 217 DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL 276
D + A+ + LG +Y ++G D+ I ++ A++L P AW NLG+AY K+ D A+
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 277 KAFEEVLLFDPNNKVA 292
+ +++ L PNN A
Sbjct: 64 EYYQKALELYPNNAEA 79
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 217 DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL 276
D + A+ + LG +Y ++G K I ++ A++L P +AW NLG+AY K+ D + A+
Sbjct: 4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAI 63
Query: 277 KAFEEVLLFDPNNKVARPRR 296
+ +++ L DPNN A RR
Sbjct: 64 EYYQKALELDPNNAKAWYRR 83
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
SA + LG ++ Y A +Y +A+E D + A + LG +Y ++G K I
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALEL----DPNNASAWYNLGNAYYKQGDYQKAI 63
Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
++ A++L P AW G+AY K+ D + A++ +++ L DPNN A+
Sbjct: 64 EYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAK 114
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
+A+ ++ LG ++ Y A +Y +A+E D + A+ + G +Y ++G K I
Sbjct: 42 NASAWYNLGNAYYKQGDYQKAIEYYQKALEL----DPNNAKAWYRRGNAYYKQGDYQKAI 97
Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKK 269
++ A++L P A NLG+A +K+
Sbjct: 98 EDYQKALELDPNNAKAKQNLGNAKQKQ 124
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
SA ++ LG ++ Y A +Y +A+E D A+ + LG +Y ++G D+ I
Sbjct: 34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAI 89
Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287
++ A++L P AW NLG+AY K+ D A++ +++ L DP
Sbjct: 90 EYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGIS 243
A ++ LG ++ Y A +Y +A+E D A+ + LG +Y ++G D+ I
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAIE 56
Query: 244 QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287
++ A++L P AW NLG+AY K+ D A++ +++ L DP
Sbjct: 57 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 59.3 bits (142), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 217 DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL 276
D + A+ + LG +Y ++G D+ I ++ A++L P AW NLG+AY K+ D A+
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 277 KAFEEVLLFDPNNKVAR 293
+ +++ L DPNN A+
Sbjct: 64 EYYQKALELDPNNAEAK 80
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242
SA ++ LG ++ Y A +Y +A+E D + A+ + LG +Y ++G D+ I
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 243 SQFETAVKLQPGYVTAWNNLGDAYEKK 269
++ A++L P A NLG+A +K+
Sbjct: 64 EYYQKALELDPNNAEAKQNLGNAKQKQ 90
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 153 TFFVIRQVLVRRELDLSAKELQEQ-VRSGDASATEYFELGAVMLRRKFYPAATKYLLQAI 211
++ V V +E+ AK++ E+ +R+G + ++ LG V+++ + A YL +A+
Sbjct: 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152
Query: 212 EKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKD 271
E + D + Q G+ EG LD+ +SQF + PG+ A+ N G Y K++
Sbjct: 153 ELNENDTEARFQ----FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN 208
Query: 272 LKSALKAFEEVLLFDPNNKVA 292
+ AL+ ++ + P++ +A
Sbjct: 209 REKALEMLDKAIDIQPDHMLA 229
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 52.8 bits (125), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEE 281
A+ + LG +Y ++G D+ I ++ A++L P AW NLG+AY K+ D A++ +++
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 282 VLLFDPNN 289
L DP +
Sbjct: 63 ALELDPRS 70
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 254 GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292
G AW NLG+AY K+ D A++ +++ L DP + A
Sbjct: 1 GSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 39
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 221 LAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFE 280
LA+ Y+ LG Y G+L + I + A++L+P ++ + NL A D++ A++A+
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 281 EVLLFDPN 288
L ++P+
Sbjct: 126 SALQYNPD 133
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246
Y L A ++ A + + A++ + DL V + LG G+L++ + +
Sbjct: 104 YINLAAALVAAGDMEGAVQAYVSALQY----NPDLYCVRSDLGNLLKALGRLEEAKACYL 159
Query: 247 TAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288
A++ QP + AW+NLG + + ++ A+ FE+ + DPN
Sbjct: 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 208 LQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYE 267
L+AIE + A ++ LG + +G++ I FE AV L P ++ A+ NLG+ +
Sbjct: 159 LKAIET----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214
Query: 268 KKKDLKSALKAFEEVLLFDPNNKV 291
+ + A+ A+ L PN+ V
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAV 238
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/52 (21%), Positives = 31/52 (59%)
Query: 220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKD 271
+ A ++ L ++GKL + + ++ A+++ P + A++N+G+ ++ +D
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 237 KLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288
+LD+ A+K P A++NLG+ Y+++ L+ A++ + L P+
Sbjct: 48 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAF 279
A Y LG+ Y G+ DK I +E + ++PG++ A+ ++G AYE K A+K F
Sbjct: 107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 257 TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
T + ++GD K D A++A+++VL DPNN
Sbjct: 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN 38
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 40/68 (58%)
Query: 220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAF 279
+ A ++ L ++GKL + + ++ A+++ P + A++N+G+ ++ +D++ AL+ +
Sbjct: 41 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCY 100
Query: 280 EEVLLFDP 287
+ +P
Sbjct: 101 TRAIQINP 108
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 23/41 (56%)
Query: 248 AVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288
AVKL+P V AWN LG+ Y KK D+ SA F L N
Sbjct: 129 AVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN 169
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 21/123 (17%)
Query: 183 SATEYFELGAVMLRRK-------------FYPAATKY-----LLQAIEKWDGDDQDLAQV 224
S +Y +LG+V L+ F+ A +Y LL A + + +D AQ+
Sbjct: 118 SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND---AQL 174
Query: 225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLL 284
+ +LGV Y D + AV+L+P WN LG + AL A+ L
Sbjct: 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234
Query: 285 FDP 287
+P
Sbjct: 235 INP 237
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 21/123 (17%)
Query: 183 SATEYFELGAVMLRRK-------------FYPAATKY-----LLQAIEKWDGDDQDLAQV 224
S +Y +LG+V L+ F+ A +Y LL A + + +D AQ+
Sbjct: 118 SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND---AQL 174
Query: 225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLL 284
+ +LGV Y D + AV+L+P WN LG + AL A+ L
Sbjct: 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234
Query: 285 FDP 287
+P
Sbjct: 235 INP 237
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 229 GVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288
G+ ++EG L + FE AV+ P ++ AW LG + + A+ A L P+
Sbjct: 8 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 67
Query: 289 NKVA 292
N+ A
Sbjct: 68 NQTA 71
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
V LGV + G+ DK + F A+ ++P WN LG + A+ A+ L
Sbjct: 156 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL 215
Query: 284 LFDPN 288
P
Sbjct: 216 ELQPG 220
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 40/80 (50%)
Query: 224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
++N LG + + ++ ++ + A++LQPGY+ + NLG + + A++ F E L
Sbjct: 190 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 249
Query: 284 LFDPNNKVARPRRDALKDRV 303
++ R A+ + +
Sbjct: 250 NMQRKSRGPRGEGGAMSENI 269
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 229 GVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288
G+ ++EG L + FE AV+ P ++ AW LG + + A+ A L P+
Sbjct: 22 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 81
Query: 289 NKVA 292
N+ A
Sbjct: 82 NQTA 85
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
V LGV + G+ DK + F A+ ++P WN LG + A+ A+ L
Sbjct: 170 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL 229
Query: 284 LFDPN 288
P
Sbjct: 230 ELQPG 234
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 40/80 (50%)
Query: 224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
++N LG + + ++ ++ + A++LQPGY+ + NLG + + A++ F E L
Sbjct: 204 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 263
Query: 284 LFDPNNKVARPRRDALKDRV 303
++ R A+ + +
Sbjct: 264 NMQRKSRGPRGEGGAMSENI 283
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 229 GVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288
G+ ++EG L + FE AV+ P ++ AW LG + + A+ A L P+
Sbjct: 31 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 90
Query: 289 NKVA 292
N+ A
Sbjct: 91 NQTA 94
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
V LGV + G+ DK + F A+ ++P WN LG + A+ A+ L
Sbjct: 179 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL 238
Query: 284 LFDPN 288
P
Sbjct: 239 ELQPG 243
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 40/80 (50%)
Query: 224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
++N LG + + ++ ++ + A++LQPGY+ + NLG + + A++ F E L
Sbjct: 213 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 272
Query: 284 LFDPNNKVARPRRDALKDRV 303
++ R A+ + +
Sbjct: 273 NMQRKSRGPRGEGGAMSENI 292
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 229 GVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288
G+ ++EG L + FE AV+ P ++ AW LG + + A+ A L P+
Sbjct: 31 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 90
Query: 289 NKVA 292
N+ A
Sbjct: 91 NQTA 94
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
V LGV + G+ DK + F A+ ++P WN LG + A+ A+ L
Sbjct: 179 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL 238
Query: 284 LFDPN 288
P
Sbjct: 239 ELQPG 243
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 40/80 (50%)
Query: 224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
++N LG + + ++ ++ + A++LQPGY+ + NLG + + A++ F E L
Sbjct: 213 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 272
Query: 284 LFDPNNKVARPRRDALKDRV 303
++ R A+ + +
Sbjct: 273 NMQRKSRGPRGEGGAMSENI 292
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 229 GVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288
G+ ++EG L + FE AV+ P ++ AW LG + + A+ A L P+
Sbjct: 71 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 130
Query: 289 NKVA 292
N+ A
Sbjct: 131 NQTA 134
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
V LGV + G+ DK + F A+ ++P WN LG + A+ A+ L
Sbjct: 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL 278
Query: 284 LFDPN 288
P
Sbjct: 279 ELQPG 283
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 40/80 (50%)
Query: 224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
++N LG + + ++ ++ + A++LQPGY+ + NLG + + A++ F E L
Sbjct: 253 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 312
Query: 284 LFDPNNKVARPRRDALKDRV 303
++ R A+ + +
Sbjct: 313 NMQRKSRGPRGEGGAMSENI 332
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 226 NALGVSYVREGKLDKGISQFETAVKL-------QPGYVTAWNNLGDAYEKKKDLKSALKA 278
N LGV + + I+ F+ A+ L + + W NLG AY K K +A+ A
Sbjct: 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538
Query: 279 FEEVLLFDPNN 289
+ LL N+
Sbjct: 539 LNQGLLLSTND 549
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 229 GVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288
G+ ++EG L I E A+ PG AW LG + ++ ++A+ A + L PN
Sbjct: 72 GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN 131
Query: 289 N 289
N
Sbjct: 132 N 132
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 206 YLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDA 265
YL A + D D DL LGV + G+ ++ I F A+ ++P + WN LG
Sbjct: 200 YLEAAHQNGDMIDPDLQ---TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT 256
Query: 266 YEKKKDLKSALKAFEEVLLFDP 287
+ A++A+ L P
Sbjct: 257 LANGDRSEEAVEAYTRALEIQP 278
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG 263
++N LG + + ++ + + A+++QPG++ + NLG
Sbjct: 249 LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLG 288
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 174 QEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYV 233
QE+ G+ EYF+ G YP A ++ +A+++ D + A +Y+
Sbjct: 14 QEEKNKGN----EYFKKGD-------YPTAMRHYNEAVKR----DPENAILYSNRAACLT 58
Query: 234 REGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293
+ + + + +T ++L ++ + ++ A +A+E+ L DP+N+ AR
Sbjct: 59 KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAR 118
>pdb|2KAT|A Chain A, Solution Structure Of Protein Bpp2914 From Bordetella
Parapertussis. Northeast Structural Genomics Consortium
Target Bpr206
Length = 115
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 228 LGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283
LG +Y + D + A+ P Y AW LG + + D A +A+E L
Sbjct: 25 LGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG 263
D +V+N LG+ + G D F++ ++L P Y A N G
Sbjct: 75 DXPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALK 277
D + AQ+ GV Y G + F A+ ++P +N LG + + +A +
Sbjct: 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYE 98
Query: 278 AFEEVLLFDPNNKVARPRRDALKDRVPLYKG 308
AF+ VL DP A R + LY G
Sbjct: 99 AFDSVLELDPTYNYAHLNRG-----IALYYG 124
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 230 VSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
+Y G+ +K E A + P Y AW+ LG A D K A +A+E+ + + N
Sbjct: 53 AAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 207 LLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY 266
LL+ + D D D+A LG++YV+ G +D+G E ++ P V LG Y
Sbjct: 30 LLEQVYDADAFDVDVAL---HLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 207 LLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY 266
LL+ + D D D+A LG++YV+ G +D+G E ++ P V LG Y
Sbjct: 30 LLEQVYDADAFDVDVAL---HLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 221 LAQVYNA----------LGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY 266
L QVY+A LG++YV+ G +D+G E ++ P + LG Y
Sbjct: 31 LEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPDNIKVATVLGLTY 86
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 228 LGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287
LGV+ G+ D+ I F+ A+ L+P + +YE+ + AL F++ D
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPHFKKANELDE 175
Query: 288 NNKV 291
+ V
Sbjct: 176 RSAV 179
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 207 LLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY 266
LL+ + D D D+A LG++YV+ G +D+G E ++ P V LG Y
Sbjct: 30 LLEQVYDADAFDVDVAL---HLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 233 VREGKLDKGISQFETAVKLQP-GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV 291
+ +G ++ + E ++ +P G A+ +G+AY K D + AL ++ + +P++
Sbjct: 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70
Query: 292 ARPRR 296
+ R+
Sbjct: 71 LQARK 75
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAF 279
DLA + G ++G + + + A+K P ++N Y K + + ALK
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73
Query: 280 EEVLLFDP 287
EE + +P
Sbjct: 74 EECIQLEP 81
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 227 ALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAF 279
AL +++ + ++ FE V+ P YV + +LG YE+ A+ +
Sbjct: 12 ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
Length = 99
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 227 ALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAF 279
AL +++ + ++ FE V+ P YV + +LG YE+ A+ +
Sbjct: 11 ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 63
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 230 VSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289
+Y + G + E A+ + P Y A+ +G A A+ +++ L DP+N
Sbjct: 54 AAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113
Query: 290 KV 291
+
Sbjct: 114 ET 115
>pdb|2V6Y|B Chain B, Structure Of The Mit Domain From A S. Solfataricus Vps4-
Like Atpase
Length = 83
Score = 27.7 bits (60), Expect = 8.3, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 219 QDLAQVYNALGVSYVREGKLDKGISQFETAVK-------LQPGYV--TAWNNLGDAYEKK 269
+D+A+ Y L V +EGK+D I+ ++ A++ L P V TA+ + + Y+K+
Sbjct: 8 EDMARKYAILAVKADKEGKVDDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKR 67
>pdb|2DVY|A Chain A, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|B Chain B, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|C Chain C, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|D Chain D, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|E Chain E, Crystal Structure Of Restriction Endonucleases Pabi
pdb|2DVY|F Chain F, Crystal Structure Of Restriction Endonucleases Pabi
Length = 226
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG-----------DDQDLAQVYNALGVSY 232
A+ FE G +++R +K ++ IE G D++L Y +SY
Sbjct: 9 ASVSFENGKIVVRLPITRPTSKIRVKKIENGVGIPVSTRKKSFPSDENLRDYYIEWQISY 68
Query: 233 VREGKLDKGISQFETAVKLQPGY-VTAWNNLGDAYEKKKDLKSALK 277
R+GK D +S+ V+L + + +N++ + + D+KS L+
Sbjct: 69 ARDGKYDYELSRM---VRLAHEHGILTYNDIYELLKFADDVKSYLE 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,750,334
Number of Sequences: 62578
Number of extensions: 273992
Number of successful extensions: 758
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 105
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)