Query 021175
Match_columns 316
No_of_seqs 398 out of 3497
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:10:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.9 9.7E-22 2.1E-26 177.9 16.9 177 117-309 299-475 (966)
2 KOG4626 O-linked N-acetylgluco 99.9 8.7E-22 1.9E-26 178.2 13.6 145 161-309 297-441 (966)
3 COG3063 PilF Tfp pilus assembl 99.8 3.3E-18 7.1E-23 138.6 16.1 145 161-309 46-192 (250)
4 PRK15359 type III secretion sy 99.8 2.7E-18 5.8E-23 134.9 14.6 128 169-303 12-139 (144)
5 TIGR00990 3a0801s09 mitochondr 99.8 1.2E-17 2.5E-22 161.8 21.0 154 147-309 333-486 (615)
6 KOG1155 Anaphase-promoting com 99.8 3.8E-18 8.2E-23 150.2 15.7 144 162-309 342-485 (559)
7 PRK12370 invasion protein regu 99.8 1.3E-17 2.9E-22 159.0 19.1 184 119-309 276-460 (553)
8 KOG1126 DNA-binding cell divis 99.8 3.7E-18 8E-23 156.3 14.0 179 115-309 432-610 (638)
9 KOG1126 DNA-binding cell divis 99.8 2E-18 4.4E-23 158.0 11.9 154 147-309 423-576 (638)
10 KOG1173 Anaphase-promoting com 99.8 1.1E-16 2.4E-21 144.2 21.0 189 102-302 343-535 (611)
11 PRK10370 formate-dependent nit 99.8 1.8E-16 3.8E-21 131.1 20.8 134 162-299 51-187 (198)
12 KOG1155 Anaphase-promoting com 99.7 1.3E-16 2.8E-21 140.7 17.3 178 117-310 343-527 (559)
13 TIGR02521 type_IV_pilW type IV 99.7 9.1E-16 2E-20 129.2 22.2 180 116-309 43-222 (234)
14 TIGR02521 type_IV_pilW type IV 99.7 3.6E-16 7.7E-21 131.7 18.7 144 162-309 43-188 (234)
15 TIGR00990 3a0801s09 mitochondr 99.7 6.6E-16 1.4E-20 149.6 22.8 162 116-293 343-504 (615)
16 PRK09782 bacteriophage N4 rece 99.7 3E-16 6.5E-21 156.4 20.5 142 162-308 588-729 (987)
17 PRK11189 lipoprotein NlpI; Pro 99.7 6E-16 1.3E-20 136.3 19.9 101 147-256 66-166 (296)
18 PRK09782 bacteriophage N4 rece 99.7 5E-16 1.1E-20 154.8 20.9 144 161-309 553-696 (987)
19 COG3063 PilF Tfp pilus assembl 99.7 1.6E-15 3.4E-20 123.1 18.1 178 116-307 47-224 (250)
20 PRK12370 invasion protein regu 99.7 1.5E-15 3.3E-20 144.9 20.6 170 120-305 320-490 (553)
21 KOG0553 TPR repeat-containing 99.7 3.7E-16 7.9E-21 131.6 14.1 121 184-308 81-201 (304)
22 PRK15174 Vi polysaccharide exp 99.7 1.7E-15 3.8E-20 147.0 20.6 146 160-309 222-371 (656)
23 TIGR02552 LcrH_SycD type III s 99.7 1.1E-15 2.5E-20 118.7 15.3 126 171-300 4-129 (135)
24 PRK15174 Vi polysaccharide exp 99.7 8.1E-15 1.7E-19 142.4 22.0 146 160-309 187-337 (656)
25 PRK11447 cellulose synthase su 99.7 1.9E-14 4.2E-19 148.3 24.2 190 116-309 315-548 (1157)
26 PRK11189 lipoprotein NlpI; Pro 99.7 4.7E-15 1E-19 130.6 16.7 125 163-291 39-167 (296)
27 PRK11447 cellulose synthase su 99.7 7.1E-15 1.5E-19 151.4 20.6 177 117-309 282-514 (1157)
28 TIGR03302 OM_YfiO outer membra 99.7 1.3E-14 2.9E-19 123.6 18.9 149 160-309 43-222 (235)
29 PRK15359 type III secretion sy 99.6 8.5E-15 1.9E-19 115.0 15.6 105 161-269 35-139 (144)
30 TIGR02917 PEP_TPR_lipo putativ 99.6 2E-14 4.4E-19 144.0 21.8 145 161-310 747-891 (899)
31 PRK15363 pathogenicity island 99.6 1E-14 2.2E-19 113.1 14.2 118 177-298 27-148 (157)
32 KOG1125 TPR repeat-containing 99.6 6.5E-15 1.4E-19 133.3 14.2 159 146-309 320-517 (579)
33 PRK11788 tetratricopeptide rep 99.6 5.2E-14 1.1E-18 128.9 20.5 144 162-309 119-268 (389)
34 PRK11788 tetratricopeptide rep 99.6 9.5E-14 2.1E-18 127.1 21.0 131 162-297 192-323 (389)
35 PF13429 TPR_15: Tetratricopep 99.6 1E-14 2.2E-19 127.7 12.7 147 161-311 121-269 (280)
36 TIGR02917 PEP_TPR_lipo putativ 99.6 1.6E-13 3.5E-18 137.5 22.2 144 162-309 545-688 (899)
37 KOG1125 TPR repeat-containing 99.6 5.3E-14 1.1E-18 127.5 16.6 199 105-307 319-559 (579)
38 KOG0547 Translocase of outer m 99.6 1.8E-14 3.8E-19 128.1 11.4 156 146-310 327-482 (606)
39 PRK15179 Vi polysaccharide bio 99.6 1.9E-13 4.1E-18 131.8 19.0 129 160-292 96-224 (694)
40 KOG0553 TPR repeat-containing 99.6 7.5E-14 1.6E-18 117.7 13.9 114 156-273 87-200 (304)
41 PRK10370 formate-dependent nit 99.6 2.3E-13 5E-18 112.5 16.3 109 197-309 52-163 (198)
42 KOG0547 Translocase of outer m 99.6 1.5E-13 3.3E-18 122.2 15.6 156 117-288 339-494 (606)
43 COG5010 TadD Flp pilus assembl 99.5 2.6E-13 5.6E-18 112.5 15.6 146 161-310 77-222 (257)
44 PLN02789 farnesyltranstransfer 99.5 2.2E-12 4.7E-17 114.0 22.0 170 117-302 50-229 (320)
45 PLN03088 SGT1, suppressor of 99.5 2.7E-13 5.9E-18 122.2 15.1 112 188-303 6-117 (356)
46 PLN02789 farnesyltranstransfer 99.5 1.2E-12 2.6E-17 115.7 18.4 139 162-304 49-190 (320)
47 KOG1129 TPR repeat-containing 99.5 1.7E-13 3.6E-18 116.6 12.0 145 161-309 301-448 (478)
48 PRK15179 Vi polysaccharide bio 99.5 7E-13 1.5E-17 127.9 17.9 142 165-310 67-208 (694)
49 PRK10049 pgaA outer membrane p 99.5 7.7E-13 1.7E-17 131.0 18.4 142 162-308 27-168 (765)
50 KOG1173 Anaphase-promoting com 99.5 4.8E-13 1.1E-17 121.0 15.1 174 120-309 328-508 (611)
51 KOG0548 Molecular co-chaperone 99.5 2.4E-12 5.3E-17 115.9 17.9 138 162-303 310-473 (539)
52 PRK10049 pgaA outer membrane p 99.5 2.2E-12 4.9E-17 127.7 19.5 151 160-310 282-447 (765)
53 COG5010 TadD Flp pilus assembl 99.5 1.2E-12 2.6E-17 108.5 14.3 143 163-310 46-188 (257)
54 TIGR03302 OM_YfiO outer membra 99.5 4.1E-12 9E-17 108.2 17.8 158 117-287 46-234 (235)
55 PRK15363 pathogenicity island 99.5 3.6E-12 7.8E-17 99.1 15.2 89 160-252 45-133 (157)
56 COG4235 Cytochrome c biogenesi 99.4 1.8E-11 4E-16 104.0 19.7 138 163-304 135-275 (287)
57 PF13429 TPR_15: Tetratricopep 99.4 1.1E-12 2.3E-17 114.9 12.3 121 161-285 157-277 (280)
58 TIGR02795 tol_pal_ybgF tol-pal 99.4 3.6E-12 7.9E-17 96.3 13.4 112 184-296 2-116 (119)
59 PLN03088 SGT1, suppressor of 99.4 2.7E-12 5.9E-17 115.7 14.8 108 158-269 10-117 (356)
60 KOG1840 Kinesin light chain [C 99.4 1.6E-11 3.6E-16 113.5 19.5 191 115-310 210-429 (508)
61 KOG2002 TPR-containing nuclear 99.4 1.4E-11 3.1E-16 117.7 18.5 177 118-304 213-390 (1018)
62 TIGR02552 LcrH_SycD type III s 99.4 1.2E-11 2.5E-16 96.0 14.8 94 162-259 29-122 (135)
63 cd05804 StaR_like StaR_like; a 99.4 2.6E-11 5.6E-16 109.7 19.3 106 178-287 108-217 (355)
64 KOG1129 TPR repeat-containing 99.4 1.5E-12 3.3E-17 110.8 10.1 140 162-302 336-475 (478)
65 KOG1840 Kinesin light chain [C 99.4 1.4E-11 3.1E-16 113.9 17.2 190 115-309 252-469 (508)
66 CHL00033 ycf3 photosystem I as 99.4 1.7E-11 3.7E-16 99.0 15.5 126 164-290 13-154 (168)
67 PRK02603 photosystem I assembl 99.4 1.4E-11 3E-16 99.9 15.0 108 181-289 32-153 (172)
68 COG2956 Predicted N-acetylgluc 99.4 1.6E-10 3.5E-15 98.4 21.1 152 157-308 114-267 (389)
69 PF13414 TPR_11: TPR repeat; P 99.4 2.4E-12 5.1E-17 87.8 7.9 67 221-287 2-69 (69)
70 cd00189 TPR Tetratricopeptide 99.4 1.4E-11 3E-16 88.0 11.9 99 186-288 2-100 (100)
71 COG4783 Putative Zn-dependent 99.4 8.6E-11 1.9E-15 105.2 18.5 140 160-303 316-455 (484)
72 KOG2076 RNA polymerase III tra 99.4 8.4E-11 1.8E-15 111.7 19.1 132 147-287 141-272 (895)
73 KOG2076 RNA polymerase III tra 99.3 1.7E-10 3.8E-15 109.6 20.5 195 103-309 171-502 (895)
74 KOG3060 Uncharacterized conser 99.3 4.2E-10 9.2E-15 92.9 20.1 134 162-299 98-234 (289)
75 KOG3060 Uncharacterized conser 99.3 2E-10 4.4E-15 94.8 17.9 141 161-305 63-203 (289)
76 KOG4162 Predicted calmodulin-b 99.3 5E-11 1.1E-15 111.5 15.6 126 162-291 662-789 (799)
77 KOG2002 TPR-containing nuclear 99.3 1.6E-11 3.5E-16 117.3 12.3 154 147-304 602-764 (1018)
78 PRK14574 hmsH outer membrane p 99.3 1.9E-10 4.1E-15 113.2 19.8 175 115-307 45-220 (822)
79 PRK15331 chaperone protein Sic 99.3 4.7E-11 1E-15 93.2 12.2 123 177-304 30-152 (165)
80 KOG4162 Predicted calmodulin-b 99.3 4.9E-10 1.1E-14 105.0 20.9 173 125-309 465-773 (799)
81 PF13414 TPR_11: TPR repeat; P 99.3 1.4E-11 3.1E-16 83.8 8.2 67 183-253 2-69 (69)
82 KOG2003 TPR repeat-containing 99.3 9.7E-11 2.1E-15 103.8 15.3 144 162-309 502-679 (840)
83 PRK10747 putative protoheme IX 99.3 2.6E-10 5.6E-15 104.8 18.8 183 115-309 129-380 (398)
84 COG2956 Predicted N-acetylgluc 99.3 7E-10 1.5E-14 94.6 19.6 127 162-292 153-285 (389)
85 PRK14574 hmsH outer membrane p 99.3 1.1E-10 2.4E-15 114.8 17.0 140 162-306 46-185 (822)
86 PRK10153 DNA-binding transcrip 99.3 1.8E-10 3.9E-15 108.2 17.6 127 163-292 355-489 (517)
87 COG4783 Putative Zn-dependent 99.3 1.1E-10 2.4E-15 104.6 14.9 125 181-309 303-427 (484)
88 PF09976 TPR_21: Tetratricopep 99.3 4E-10 8.7E-15 88.6 16.3 120 162-283 23-145 (145)
89 PRK10866 outer membrane biogen 99.3 7.2E-10 1.6E-14 94.6 19.0 149 160-309 42-231 (243)
90 PF13432 TPR_16: Tetratricopep 99.3 2.1E-11 4.5E-16 82.0 7.6 64 227-290 2-65 (65)
91 KOG0543 FKBP-type peptidyl-pro 99.3 3.3E-11 7.2E-16 105.9 10.9 119 188-306 212-341 (397)
92 KOG0550 Molecular chaperone (D 99.3 6.2E-11 1.3E-15 103.9 12.4 137 162-299 215-363 (486)
93 KOG2003 TPR repeat-containing 99.3 1.4E-10 3E-15 102.9 14.7 143 163-309 469-611 (840)
94 PF13525 YfiO: Outer membrane 99.3 1E-09 2.2E-14 91.3 18.9 150 157-307 12-195 (203)
95 PRK10803 tol-pal system protei 99.3 3.9E-10 8.3E-15 97.0 16.5 115 184-299 142-260 (263)
96 KOG0624 dsRNA-activated protei 99.2 4.8E-10 1E-14 96.4 16.3 141 162-306 50-239 (504)
97 KOG0548 Molecular co-chaperone 99.2 2.5E-10 5.3E-15 103.2 15.3 148 162-309 269-445 (539)
98 TIGR00540 hemY_coli hemY prote 99.2 8.2E-10 1.8E-14 101.9 18.9 148 160-307 163-352 (409)
99 PF12895 Apc3: Anaphase-promot 99.2 4.3E-11 9.3E-16 84.9 7.5 81 197-282 2-84 (84)
100 KOG0495 HAT repeat protein [RN 99.2 2.4E-09 5.3E-14 98.9 19.9 147 158-309 592-738 (913)
101 TIGR00540 hemY_coli hemY prote 99.2 7.6E-09 1.6E-13 95.5 23.6 126 162-291 96-222 (409)
102 TIGR02795 tol_pal_ybgF tol-pal 99.2 6.5E-10 1.4E-14 83.8 13.8 99 160-259 12-113 (119)
103 KOG0550 Molecular chaperone (D 99.2 3.8E-11 8.2E-16 105.2 7.7 145 161-309 180-340 (486)
104 PF13432 TPR_16: Tetratricopep 99.2 1.1E-10 2.5E-15 78.4 8.3 65 188-256 1-65 (65)
105 KOG0624 dsRNA-activated protei 99.2 2.5E-09 5.4E-14 92.0 17.1 136 160-299 116-266 (504)
106 cd00189 TPR Tetratricopeptide 99.2 7.1E-10 1.5E-14 78.9 11.8 90 161-254 11-100 (100)
107 PF12895 Apc3: Anaphase-promot 99.2 1.3E-10 2.8E-15 82.4 7.3 82 162-248 1-84 (84)
108 KOG1174 Anaphase-promoting com 99.1 8.7E-09 1.9E-13 90.7 19.2 146 160-306 344-521 (564)
109 PRK02603 photosystem I assembl 99.1 2.2E-09 4.8E-14 86.9 14.8 90 162-255 47-153 (172)
110 KOG1156 N-terminal acetyltrans 99.1 9E-10 1.9E-14 101.5 13.2 146 160-309 17-162 (700)
111 cd05804 StaR_like StaR_like; a 99.1 2E-09 4.3E-14 97.4 15.4 151 159-310 52-206 (355)
112 KOG1127 TPR repeat-containing 99.1 1.7E-09 3.6E-14 103.9 15.2 154 147-309 494-649 (1238)
113 PRK11906 transcriptional regul 99.1 3.1E-09 6.8E-14 95.8 16.0 128 163-294 271-410 (458)
114 KOG4234 TPR repeat-containing 99.1 8.8E-10 1.9E-14 88.0 10.6 115 185-299 96-211 (271)
115 PRK10747 putative protoheme IX 99.1 5E-08 1.1E-12 89.7 23.4 126 162-292 96-223 (398)
116 CHL00033 ycf3 photosystem I as 99.1 4.2E-09 9.1E-14 84.9 14.4 91 162-256 47-154 (168)
117 PF12688 TPR_5: Tetratrico pep 99.1 4.1E-09 8.8E-14 79.3 13.2 99 185-284 2-103 (120)
118 COG1729 Uncharacterized protei 99.1 4E-09 8.6E-14 88.8 14.1 112 187-299 144-258 (262)
119 KOG1174 Anaphase-promoting com 99.1 8.4E-09 1.8E-13 90.8 16.5 146 160-309 310-457 (564)
120 KOG4648 Uncharacterized conser 99.1 3.9E-10 8.4E-15 96.9 8.0 109 187-299 100-208 (536)
121 PRK10803 tol-pal system protei 99.1 2.6E-09 5.7E-14 91.9 13.3 96 162-258 155-253 (263)
122 KOG0543 FKBP-type peptidyl-pro 99.1 4E-09 8.8E-14 92.9 14.3 124 160-287 218-357 (397)
123 PF09295 ChAPs: ChAPs (Chs5p-A 99.1 7.1E-09 1.5E-13 93.7 15.8 121 162-289 181-301 (395)
124 PF14559 TPR_19: Tetratricopep 99.0 6.9E-10 1.5E-14 75.2 6.9 66 233-298 2-67 (68)
125 KOG1128 Uncharacterized conser 99.0 5.7E-10 1.2E-14 104.1 8.2 125 160-288 495-619 (777)
126 PF13371 TPR_9: Tetratricopept 99.0 1.4E-09 3.1E-14 74.7 8.3 70 229-298 2-71 (73)
127 KOG1128 Uncharacterized conser 99.0 2.6E-09 5.6E-14 99.8 12.3 144 162-309 462-606 (777)
128 PF13512 TPR_18: Tetratricopep 99.0 1.2E-08 2.7E-13 78.1 13.6 111 183-294 9-137 (142)
129 KOG0495 HAT repeat protein [RN 99.0 3.5E-08 7.5E-13 91.4 17.5 143 162-309 630-772 (913)
130 PRK14720 transcript cleavage f 99.0 8.7E-09 1.9E-13 101.0 14.3 121 162-285 43-178 (906)
131 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 3.2E-09 6.9E-14 95.6 9.4 69 179-251 70-141 (453)
132 PF14938 SNAP: Soluble NSF att 99.0 6.5E-08 1.4E-12 84.7 17.4 169 117-292 48-232 (282)
133 PRK15331 chaperone protein Sic 99.0 1.7E-08 3.7E-13 79.0 12.0 94 160-258 47-140 (165)
134 PRK14720 transcript cleavage f 98.9 6.1E-08 1.3E-12 95.2 18.4 134 168-308 100-273 (906)
135 PF12569 NARP1: NMDA receptor- 98.9 9.8E-08 2.1E-12 89.5 18.6 150 160-309 48-281 (517)
136 PRK11906 transcriptional regul 98.9 8.3E-08 1.8E-12 86.7 16.7 160 119-285 273-436 (458)
137 PF13424 TPR_12: Tetratricopep 98.9 4.2E-09 9.2E-14 73.4 6.4 67 184-250 5-74 (78)
138 PRK10866 outer membrane biogen 98.9 5.3E-08 1.2E-12 83.1 14.1 109 182-291 30-159 (243)
139 PF14559 TPR_19: Tetratricopep 98.9 5.1E-09 1.1E-13 70.9 6.1 64 196-263 3-66 (68)
140 PF13371 TPR_9: Tetratricopept 98.9 1.4E-08 3E-13 69.8 8.4 70 190-263 1-70 (73)
141 PF13525 YfiO: Outer membrane 98.9 1E-07 2.2E-12 79.3 15.1 110 183-293 4-127 (203)
142 PF13424 TPR_12: Tetratricopep 98.9 6.4E-09 1.4E-13 72.5 6.6 69 218-286 1-76 (78)
143 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 3.3E-08 7.1E-13 89.2 12.7 69 217-285 70-141 (453)
144 PF09976 TPR_21: Tetratricopep 98.9 8E-08 1.7E-12 75.5 13.4 113 196-310 23-138 (145)
145 COG4235 Cytochrome c biogenesi 98.9 2.3E-08 5.1E-13 85.2 10.8 106 200-309 138-246 (287)
146 PF04733 Coatomer_E: Coatomer 98.9 9.8E-08 2.1E-12 83.5 14.9 131 160-294 141-274 (290)
147 KOG1127 TPR repeat-containing 98.9 4.8E-08 1E-12 94.2 13.7 145 161-309 469-615 (1238)
148 PF04733 Coatomer_E: Coatomer 98.9 3.4E-08 7.3E-13 86.4 11.8 137 162-307 114-252 (290)
149 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 7.3E-08 1.6E-12 87.2 13.2 112 191-309 176-287 (395)
150 COG4785 NlpI Lipoprotein NlpI, 98.8 5.8E-08 1.3E-12 78.7 10.9 90 162-255 77-166 (297)
151 PF06552 TOM20_plant: Plant sp 98.8 4.4E-08 9.6E-13 77.4 9.9 67 165-235 6-82 (186)
152 PRK10153 DNA-binding transcrip 98.8 1.6E-07 3.6E-12 88.4 15.4 131 118-257 356-488 (517)
153 COG4700 Uncharacterized protei 98.8 1.8E-07 3.9E-12 74.1 12.9 117 159-280 98-217 (251)
154 COG4105 ComL DNA uptake lipopr 98.8 1.1E-06 2.3E-11 73.7 18.0 149 160-309 44-223 (254)
155 PF12688 TPR_5: Tetratrico pep 98.8 4E-07 8.8E-12 68.5 13.3 90 160-250 11-103 (120)
156 KOG4234 TPR repeat-containing 98.7 2.3E-07 4.9E-12 74.4 12.0 104 158-265 103-211 (271)
157 PF14938 SNAP: Soluble NSF att 98.7 1.9E-07 4.1E-12 81.8 12.8 144 162-306 47-212 (282)
158 KOG4555 TPR repeat-containing 98.7 3.4E-07 7.4E-12 68.3 11.8 98 187-288 46-147 (175)
159 PF13512 TPR_18: Tetratricopep 98.7 4.2E-07 9E-12 69.7 12.5 100 157-257 17-134 (142)
160 COG1729 Uncharacterized protei 98.7 3.9E-07 8.4E-12 76.9 13.5 100 160-260 151-253 (262)
161 COG4700 Uncharacterized protei 98.7 1.6E-05 3.5E-10 63.3 21.2 141 165-310 71-213 (251)
162 KOG4340 Uncharacterized conser 98.7 4E-07 8.6E-12 77.3 12.4 143 162-308 22-196 (459)
163 KOG3785 Uncharacterized conser 98.7 4.8E-07 1E-11 78.5 12.9 142 162-303 69-232 (557)
164 PLN03218 maturation of RBCL 1; 98.7 6E-06 1.3E-10 84.1 22.5 146 162-309 519-668 (1060)
165 COG3071 HemY Uncharacterized e 98.7 6.4E-06 1.4E-10 72.6 19.4 152 158-310 161-381 (400)
166 KOG1156 N-terminal acetyltrans 98.6 6.2E-07 1.3E-11 83.2 13.5 121 162-286 53-173 (700)
167 KOG4555 TPR repeat-containing 98.6 3E-06 6.6E-11 63.3 14.6 94 162-255 55-148 (175)
168 PLN03218 maturation of RBCL 1; 98.6 7E-06 1.5E-10 83.6 22.1 144 162-309 591-738 (1060)
169 PLN03081 pentatricopeptide (PP 98.6 1.4E-06 2.9E-11 86.1 16.8 144 162-309 403-547 (697)
170 PF06552 TOM20_plant: Plant sp 98.6 4.2E-07 9.2E-12 71.9 9.9 97 199-299 6-123 (186)
171 KOG4648 Uncharacterized conser 98.6 2.5E-07 5.4E-12 79.9 9.3 101 157-261 104-204 (536)
172 PLN03077 Protein ECB2; Provisi 98.6 2.7E-06 5.9E-11 86.0 17.6 145 162-310 566-711 (857)
173 KOG4642 Chaperone-dependent E3 98.6 1.5E-07 3.1E-12 77.4 6.6 91 190-284 16-106 (284)
174 COG4785 NlpI Lipoprotein NlpI, 98.6 5E-07 1.1E-11 73.4 9.1 106 183-292 64-169 (297)
175 PLN03081 pentatricopeptide (PP 98.5 4.4E-06 9.6E-11 82.5 17.7 141 160-309 269-410 (697)
176 PF12569 NARP1: NMDA receptor- 98.5 6.9E-06 1.5E-10 77.2 17.6 127 155-285 199-334 (517)
177 KOG1130 Predicted G-alpha GTPa 98.5 1.1E-06 2.5E-11 77.6 11.1 150 158-307 203-372 (639)
178 KOG0545 Aryl-hydrocarbon recep 98.5 2.7E-06 5.9E-11 70.4 11.2 111 184-294 178-302 (329)
179 COG0457 NrfG FOG: TPR repeat [ 98.5 2.9E-05 6.3E-10 63.9 18.0 139 162-304 107-250 (291)
180 KOG0376 Serine-threonine phosp 98.5 2.7E-07 5.8E-12 83.2 5.8 120 188-311 8-129 (476)
181 KOG2376 Signal recognition par 98.5 2.6E-05 5.5E-10 72.1 18.4 130 160-292 89-260 (652)
182 KOG1130 Predicted G-alpha GTPa 98.4 2.2E-07 4.8E-12 82.0 4.9 146 164-309 169-334 (639)
183 KOG2796 Uncharacterized conser 98.4 8E-05 1.7E-09 62.5 19.2 128 162-289 189-319 (366)
184 PF13428 TPR_14: Tetratricopep 98.4 6.8E-07 1.5E-11 54.7 5.2 41 224-264 3-43 (44)
185 COG3071 HemY Uncharacterized e 98.4 0.00013 2.8E-09 64.6 20.4 123 162-287 96-218 (400)
186 KOG2376 Signal recognition par 98.4 1.1E-05 2.4E-10 74.4 14.2 124 162-293 24-147 (652)
187 KOG3785 Uncharacterized conser 98.4 3.7E-06 8E-11 73.2 10.4 143 161-307 33-202 (557)
188 PRK04841 transcriptional regul 98.4 3.8E-05 8.3E-10 78.2 19.6 149 161-309 463-631 (903)
189 COG0457 NrfG FOG: TPR repeat [ 98.4 3.9E-05 8.5E-10 63.0 16.4 143 161-307 70-219 (291)
190 PF13428 TPR_14: Tetratricopep 98.3 9.4E-07 2E-11 54.1 4.7 43 256-298 1-43 (44)
191 PF13431 TPR_17: Tetratricopep 98.3 6.7E-07 1.5E-11 51.3 3.3 32 245-276 2-33 (34)
192 PF10300 DUF3808: Protein of u 98.3 3.4E-05 7.4E-10 72.3 15.8 126 162-287 245-378 (468)
193 KOG0551 Hsp90 co-chaperone CNS 98.3 9.5E-06 2.1E-10 70.0 10.4 105 184-289 81-186 (390)
194 KOG4642 Chaperone-dependent E3 98.3 3.8E-06 8.3E-11 69.2 7.7 87 161-251 21-107 (284)
195 PF00515 TPR_1: Tetratricopept 98.2 2.8E-06 6E-11 48.8 4.8 32 223-254 2-33 (34)
196 PLN03077 Protein ECB2; Provisi 98.2 6.7E-05 1.4E-09 76.0 17.5 118 162-285 601-720 (857)
197 PRK04841 transcriptional regul 98.2 8E-05 1.7E-09 75.9 18.2 127 161-287 502-643 (903)
198 PF04184 ST7: ST7 protein; In 98.2 8E-05 1.7E-09 67.9 15.7 140 159-300 177-340 (539)
199 COG2976 Uncharacterized protei 98.2 0.00023 5E-09 57.3 16.5 115 168-289 70-192 (207)
200 KOG4340 Uncharacterized conser 98.2 2.8E-05 6.1E-10 66.3 11.8 124 162-285 56-207 (459)
201 COG4105 ComL DNA uptake lipopr 98.2 7E-05 1.5E-09 62.9 13.7 109 182-291 32-151 (254)
202 PF07719 TPR_2: Tetratricopept 98.2 5.8E-06 1.2E-10 47.3 5.1 32 223-254 2-33 (34)
203 PF05843 Suf: Suppressor of fo 98.2 0.00018 3.8E-09 63.0 16.5 129 162-294 13-145 (280)
204 KOG3081 Vesicle coat complex C 98.1 0.0005 1.1E-08 58.0 18.0 127 161-293 148-279 (299)
205 PF00515 TPR_1: Tetratricopept 98.1 4E-06 8.7E-11 48.0 4.1 34 256-289 1-34 (34)
206 KOG3081 Vesicle coat complex C 98.1 0.00021 4.5E-09 60.2 15.4 138 161-309 119-260 (299)
207 KOG1586 Protein required for f 98.1 0.00033 7.1E-09 57.9 16.0 135 160-294 83-233 (288)
208 KOG1070 rRNA processing protei 98.1 0.00044 9.6E-09 69.9 19.8 177 116-305 1470-1649(1710)
209 KOG2610 Uncharacterized conser 98.1 0.00032 7E-09 61.0 16.4 118 163-280 116-233 (491)
210 PF07719 TPR_2: Tetratricopept 98.1 8.5E-06 1.8E-10 46.6 4.8 34 256-289 1-34 (34)
211 KOG0376 Serine-threonine phosp 98.1 6.1E-06 1.3E-10 74.6 6.0 106 158-267 12-117 (476)
212 KOG2471 TPR repeat-containing 98.1 3.4E-05 7.3E-10 69.9 10.5 145 156-300 212-379 (696)
213 KOG2053 Mitochondrial inherita 98.1 0.00027 5.8E-09 68.4 16.9 129 162-295 21-149 (932)
214 PF13431 TPR_17: Tetratricopep 98.1 5.7E-06 1.2E-10 47.4 3.4 32 173-204 2-33 (34)
215 KOG1941 Acetylcholine receptor 98.0 6.9E-05 1.5E-09 65.6 11.4 125 162-286 134-276 (518)
216 KOG1915 Cell cycle control pro 98.0 0.0015 3.3E-08 59.3 20.1 175 102-284 319-499 (677)
217 COG2976 Uncharacterized protei 98.0 0.0025 5.4E-08 51.4 19.0 82 224-307 91-176 (207)
218 KOG1070 rRNA processing protei 98.0 0.00057 1.2E-08 69.1 18.6 158 116-288 1509-1666(1710)
219 PF03704 BTAD: Bacterial trans 98.0 0.00012 2.7E-09 57.3 11.7 64 222-285 62-125 (146)
220 COG3118 Thioredoxin domain-con 97.9 0.00056 1.2E-08 58.6 15.0 143 158-306 142-288 (304)
221 KOG1941 Acetylcholine receptor 97.9 0.00029 6.2E-09 61.8 12.2 148 162-309 95-265 (518)
222 PF05843 Suf: Suppressor of fo 97.9 0.00022 4.7E-09 62.4 11.4 117 186-306 3-123 (280)
223 PF10300 DUF3808: Protein of u 97.8 0.00054 1.2E-08 64.3 14.7 93 157-252 274-377 (468)
224 KOG1586 Protein required for f 97.8 0.0014 3E-08 54.3 14.6 132 163-295 47-193 (288)
225 PF13281 DUF4071: Domain of un 97.8 0.0053 1.2E-07 55.2 19.0 41 258-298 307-347 (374)
226 KOG0545 Aryl-hydrocarbon recep 97.8 0.00024 5.2E-09 59.1 9.5 98 158-259 186-301 (329)
227 PF13181 TPR_8: Tetratricopept 97.8 5E-05 1.1E-09 43.3 4.0 30 224-253 3-32 (34)
228 PF13181 TPR_8: Tetratricopept 97.7 6.3E-05 1.4E-09 42.9 4.3 32 257-288 2-33 (34)
229 KOG1308 Hsp70-interacting prot 97.7 2.4E-05 5.3E-10 67.8 2.6 91 160-254 124-214 (377)
230 KOG1915 Cell cycle control pro 97.7 0.011 2.3E-07 54.1 19.2 140 161-306 84-223 (677)
231 PF12968 DUF3856: Domain of Un 97.7 0.0049 1.1E-07 45.5 13.8 90 196-285 21-129 (144)
232 KOG1308 Hsp70-interacting prot 97.6 1.9E-05 4.2E-10 68.5 1.5 94 191-288 121-214 (377)
233 COG3898 Uncharacterized membra 97.6 0.023 5E-07 50.7 20.3 125 162-287 166-294 (531)
234 PF03704 BTAD: Bacterial trans 97.6 0.0014 3.1E-08 51.2 11.9 85 162-250 18-124 (146)
235 KOG2796 Uncharacterized conser 97.6 0.00055 1.2E-08 57.6 9.1 122 185-309 178-305 (366)
236 KOG0551 Hsp90 co-chaperone CNS 97.6 0.0011 2.3E-08 57.7 11.0 95 157-255 88-186 (390)
237 KOG1550 Extracellular protein 97.5 0.0041 8.8E-08 59.8 15.4 145 147-301 246-407 (552)
238 KOG2610 Uncharacterized conser 97.5 0.015 3.3E-07 50.8 17.0 116 190-309 109-228 (491)
239 PF14853 Fis1_TPR_C: Fis1 C-te 97.5 0.00066 1.4E-08 42.9 6.3 46 257-302 2-47 (53)
240 COG0790 FOG: TPR repeat, SEL1 97.4 0.012 2.6E-07 51.7 16.3 133 162-304 89-236 (292)
241 PF13174 TPR_6: Tetratricopept 97.4 0.00036 7.8E-09 39.2 4.2 31 224-254 2-32 (33)
242 KOG2053 Mitochondrial inherita 97.4 0.00092 2E-08 64.9 9.2 107 195-306 20-126 (932)
243 PRK10941 hypothetical protein; 97.3 0.003 6.5E-08 54.5 11.2 81 222-302 181-261 (269)
244 PF09613 HrpB1_HrpK: Bacterial 97.3 0.02 4.4E-07 45.0 14.7 114 184-303 10-123 (160)
245 PF13176 TPR_7: Tetratricopept 97.3 0.00043 9.3E-09 40.1 4.0 23 225-247 2-24 (36)
246 KOG1585 Protein required for f 97.3 0.014 3E-07 48.9 14.1 90 196-285 122-219 (308)
247 PF13176 TPR_7: Tetratricopept 97.3 0.00021 4.6E-09 41.4 2.7 29 258-286 1-29 (36)
248 KOG4507 Uncharacterized conser 97.3 0.00086 1.9E-08 62.3 7.7 104 192-299 615-719 (886)
249 PF12968 DUF3856: Domain of Un 97.3 0.011 2.5E-07 43.6 11.9 93 158-250 17-128 (144)
250 KOG3824 Huntingtin interacting 97.3 0.0013 2.7E-08 56.7 8.0 68 192-263 124-191 (472)
251 PF04184 ST7: ST7 protein; In 97.3 0.02 4.4E-07 52.7 16.1 108 184-295 259-385 (539)
252 KOG4507 Uncharacterized conser 97.3 0.0014 3.1E-08 60.9 8.6 102 162-267 619-721 (886)
253 PF13174 TPR_6: Tetratricopept 97.3 0.00053 1.1E-08 38.5 3.8 33 257-289 1-33 (33)
254 PF14561 TPR_20: Tetratricopep 97.2 0.0031 6.6E-08 44.9 8.2 46 243-288 9-54 (90)
255 KOG2471 TPR repeat-containing 97.2 0.0012 2.5E-08 60.3 7.2 113 156-268 246-381 (696)
256 COG0790 FOG: TPR repeat, SEL1 97.2 0.083 1.8E-06 46.3 19.1 136 147-292 111-273 (292)
257 COG3898 Uncharacterized membra 97.1 0.16 3.5E-06 45.6 19.3 119 162-285 96-217 (531)
258 COG3914 Spy Predicted O-linked 97.1 0.033 7.2E-07 52.2 15.5 135 168-306 49-192 (620)
259 COG4649 Uncharacterized protei 97.1 0.097 2.1E-06 41.7 15.7 139 162-301 70-211 (221)
260 PF02259 FAT: FAT domain; Int 97.0 0.026 5.6E-07 50.8 14.5 126 180-305 142-307 (352)
261 KOG3364 Membrane protein invol 97.0 0.013 2.9E-07 44.4 10.0 84 221-304 31-119 (149)
262 KOG3617 WD40 and TPR repeat-co 97.0 0.025 5.5E-07 55.0 14.2 122 162-285 838-996 (1416)
263 smart00028 TPR Tetratricopepti 97.0 0.0013 2.9E-08 35.9 3.7 29 225-253 4-32 (34)
264 COG4976 Predicted methyltransf 97.0 0.0014 3E-08 54.2 4.9 59 232-290 5-63 (287)
265 KOG2047 mRNA splicing factor [ 97.0 0.061 1.3E-06 51.0 16.1 149 158-306 355-527 (835)
266 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0071 1.5E-07 38.2 7.1 43 223-265 2-44 (53)
267 smart00028 TPR Tetratricopepti 96.9 0.0017 3.8E-08 35.4 3.8 33 257-289 2-34 (34)
268 KOG2047 mRNA splicing factor [ 96.9 0.053 1.1E-06 51.4 15.1 151 128-285 372-540 (835)
269 PF13281 DUF4071: Domain of un 96.8 0.1 2.2E-06 47.2 15.9 122 183-305 140-274 (374)
270 KOG2300 Uncharacterized conser 96.8 0.32 6.9E-06 44.9 18.8 140 162-309 335-504 (629)
271 PF14561 TPR_20: Tetratricopep 96.7 0.015 3.2E-07 41.4 8.3 65 204-272 8-74 (90)
272 PF02259 FAT: FAT domain; Int 96.7 0.1 2.2E-06 46.8 15.8 131 158-288 154-341 (352)
273 PF10602 RPN7: 26S proteasome 96.7 0.068 1.5E-06 43.3 12.9 100 184-284 36-141 (177)
274 KOG1585 Protein required for f 96.7 0.3 6.6E-06 41.1 18.5 119 161-280 121-251 (308)
275 PF09986 DUF2225: Uncharacteri 96.6 0.042 9E-07 45.9 11.4 91 198-288 91-197 (214)
276 KOG3824 Huntingtin interacting 96.6 0.0072 1.6E-07 52.2 6.6 69 159-231 125-193 (472)
277 COG3118 Thioredoxin domain-con 96.5 0.036 7.8E-07 47.8 10.5 119 186-309 136-255 (304)
278 TIGR02561 HrpB1_HrpK type III 96.5 0.024 5.3E-07 43.8 8.6 77 192-272 18-94 (153)
279 PRK10941 hypothetical protein; 96.5 0.038 8.3E-07 47.8 10.8 76 185-264 182-257 (269)
280 KOG1310 WD40 repeat protein [G 96.5 0.0094 2E-07 55.0 7.2 85 199-287 389-476 (758)
281 PF04781 DUF627: Protein of un 96.5 0.029 6.2E-07 41.1 8.3 46 240-285 62-107 (111)
282 KOG2396 HAT (Half-A-TPR) repea 96.4 0.05 1.1E-06 50.1 11.3 90 168-261 89-179 (568)
283 KOG4814 Uncharacterized conser 96.4 0.041 8.8E-07 52.1 10.8 100 186-285 356-457 (872)
284 PF13374 TPR_10: Tetratricopep 96.4 0.0085 1.8E-07 35.4 4.5 28 186-213 4-31 (42)
285 KOG2300 Uncharacterized conser 96.3 0.43 9.2E-06 44.1 16.5 138 161-305 378-540 (629)
286 PF09613 HrpB1_HrpK: Bacterial 96.3 0.11 2.5E-06 40.8 11.3 85 222-306 10-94 (160)
287 PF13374 TPR_10: Tetratricopep 96.3 0.011 2.5E-07 34.8 4.7 29 223-251 3-31 (42)
288 PF07079 DUF1347: Protein of u 96.2 0.65 1.4E-05 42.6 17.0 122 157-281 386-520 (549)
289 PF08631 SPO22: Meiosis protei 96.2 0.14 2.9E-06 44.8 12.7 127 161-287 4-152 (278)
290 KOG3364 Membrane protein invol 96.2 0.14 3.1E-06 38.9 10.7 83 181-266 29-115 (149)
291 PF04781 DUF627: Protein of un 96.2 0.069 1.5E-06 39.2 8.9 89 159-251 5-107 (111)
292 KOG1550 Extracellular protein 96.1 0.14 3.1E-06 49.3 13.6 132 166-303 228-373 (552)
293 KOG2396 HAT (Half-A-TPR) repea 96.1 0.085 1.8E-06 48.7 11.1 75 219-293 102-177 (568)
294 PF09986 DUF2225: Uncharacteri 96.1 0.13 2.7E-06 43.1 11.4 92 163-254 90-197 (214)
295 PF04910 Tcf25: Transcriptiona 96.1 0.26 5.7E-06 44.7 14.3 81 175-255 31-137 (360)
296 PF12862 Apc5: Anaphase-promot 96.1 0.053 1.1E-06 38.9 7.9 58 195-252 9-71 (94)
297 PRK15180 Vi polysaccharide bio 96.0 0.038 8.3E-07 50.7 8.5 130 160-293 299-428 (831)
298 PF08424 NRDE-2: NRDE-2, neces 96.0 0.4 8.7E-06 42.8 15.1 112 170-285 5-131 (321)
299 KOG3617 WD40 and TPR repeat-co 96.0 0.11 2.4E-06 50.8 11.9 134 162-309 812-986 (1416)
300 COG4976 Predicted methyltransf 95.9 0.016 3.4E-07 48.1 5.1 57 195-255 6-62 (287)
301 TIGR02561 HrpB1_HrpK type III 95.8 0.15 3.3E-06 39.5 9.9 74 162-239 22-95 (153)
302 KOG0546 HSP90 co-chaperone CPR 95.8 0.0073 1.6E-07 53.1 2.9 86 221-306 274-359 (372)
303 PRK13184 pknD serine/threonine 95.7 0.32 7E-06 49.3 14.5 128 160-294 485-629 (932)
304 COG2912 Uncharacterized conser 95.6 0.19 4.2E-06 43.0 10.6 78 222-299 181-258 (269)
305 KOG0530 Protein farnesyltransf 95.6 0.63 1.4E-05 39.7 13.3 136 163-302 91-233 (318)
306 KOG4814 Uncharacterized conser 95.4 0.36 7.8E-06 46.0 12.4 94 155-252 359-458 (872)
307 COG3629 DnrI DNA-binding trans 95.2 0.28 6E-06 42.5 10.4 67 219-285 150-216 (280)
308 PF12862 Apc5: Anaphase-promot 95.1 0.28 6.2E-06 35.1 8.9 57 160-216 8-73 (94)
309 PF10373 EST1_DNA_bind: Est1 D 95.1 0.097 2.1E-06 45.4 7.7 62 241-302 1-62 (278)
310 PF08424 NRDE-2: NRDE-2, neces 95.0 1.4 3.1E-05 39.3 14.8 120 163-286 44-184 (321)
311 KOG1258 mRNA processing protei 95.0 1 2.2E-05 42.8 14.0 122 184-309 297-419 (577)
312 KOG1839 Uncharacterized protei 94.9 0.11 2.3E-06 53.2 8.2 148 160-307 942-1116(1236)
313 KOG0530 Protein farnesyltransf 94.9 1.4 3E-05 37.7 13.4 102 163-268 125-233 (318)
314 KOG1310 WD40 repeat protein [G 94.7 0.18 4E-06 46.9 8.4 92 161-256 385-479 (758)
315 PF10579 Rapsyn_N: Rapsyn N-te 94.6 0.46 1E-05 32.5 8.1 61 225-285 9-72 (80)
316 PF11207 DUF2989: Protein of u 94.5 1 2.2E-05 36.9 11.5 73 200-276 122-198 (203)
317 PF04910 Tcf25: Transcriptiona 94.5 1.1 2.3E-05 40.8 13.0 77 217-293 35-141 (360)
318 PF07720 TPR_3: Tetratricopept 94.4 0.18 3.8E-06 29.0 5.0 30 224-253 3-34 (36)
319 PF07721 TPR_4: Tetratricopept 94.4 0.059 1.3E-06 28.4 2.8 20 226-245 5-24 (26)
320 COG4649 Uncharacterized protei 94.4 1.9 4.2E-05 34.5 12.2 103 161-267 105-211 (221)
321 COG5191 Uncharacterized conser 94.3 0.13 2.8E-06 44.8 6.1 82 175-260 98-180 (435)
322 KOG2581 26S proteasome regulat 94.2 2.4 5.3E-05 38.4 13.8 146 162-307 138-304 (493)
323 PRK13184 pknD serine/threonine 94.0 0.32 6.9E-06 49.3 9.2 108 189-298 480-594 (932)
324 COG5191 Uncharacterized conser 93.8 0.1 2.3E-06 45.3 4.6 78 218-295 103-181 (435)
325 KOG1258 mRNA processing protei 93.7 2.6 5.6E-05 40.1 13.9 113 161-276 308-420 (577)
326 PF07721 TPR_4: Tetratricopept 93.6 0.1 2.2E-06 27.5 2.8 25 257-281 2-26 (26)
327 PF10345 Cohesin_load: Cohesin 93.6 3.3 7.1E-05 40.5 15.3 127 166-293 37-178 (608)
328 KOG3807 Predicted membrane pro 93.5 1.3 2.8E-05 39.1 10.9 119 158-278 192-333 (556)
329 PF10516 SHNi-TPR: SHNi-TPR; 93.5 0.15 3.2E-06 29.7 3.6 27 224-250 3-29 (38)
330 PF11817 Foie-gras_1: Foie gra 93.5 1.1 2.4E-05 38.3 10.6 85 199-283 153-245 (247)
331 PF15015 NYD-SP12_N: Spermatog 93.5 0.37 8.1E-06 43.7 7.6 53 189-245 233-285 (569)
332 PF10602 RPN7: 26S proteasome 93.4 3.5 7.7E-05 33.3 15.4 102 146-252 37-143 (177)
333 COG2912 Uncharacterized conser 93.2 0.73 1.6E-05 39.5 8.7 73 186-262 183-255 (269)
334 COG2909 MalT ATP-dependent tra 93.1 4 8.8E-05 40.7 14.6 104 184-287 415-528 (894)
335 PF07720 TPR_3: Tetratricopept 93.1 0.36 7.7E-06 27.8 4.7 33 257-289 2-36 (36)
336 PF10579 Rapsyn_N: Rapsyn N-te 93.1 1.2 2.6E-05 30.5 7.9 63 187-250 9-71 (80)
337 PF11207 DUF2989: Protein of u 93.0 0.88 1.9E-05 37.3 8.6 74 234-309 118-197 (203)
338 PF10373 EST1_DNA_bind: Est1 D 92.9 0.31 6.8E-06 42.2 6.5 62 169-234 1-62 (278)
339 COG3914 Spy Predicted O-linked 92.9 1.7 3.7E-05 41.2 11.3 102 162-267 79-187 (620)
340 PF10516 SHNi-TPR: SHNi-TPR; 92.8 0.19 4.1E-06 29.3 3.3 30 257-286 2-31 (38)
341 PF08631 SPO22: Meiosis protei 92.8 6.2 0.00013 34.4 19.4 160 116-284 5-185 (278)
342 KOG1914 mRNA cleavage and poly 92.7 2 4.3E-05 40.4 11.3 120 174-299 10-137 (656)
343 PF15015 NYD-SP12_N: Spermatog 92.4 1.3 2.9E-05 40.3 9.5 60 224-283 230-289 (569)
344 KOG3616 Selective LIM binding 92.3 6.3 0.00014 38.7 14.4 15 162-176 718-732 (1636)
345 KOG1839 Uncharacterized protei 92.2 2 4.4E-05 44.4 11.7 126 160-285 983-1128(1236)
346 KOG3616 Selective LIM binding 91.9 1.3 2.8E-05 43.2 9.4 64 221-284 823-910 (1636)
347 KOG4151 Myosin assembly protei 91.8 0.75 1.6E-05 44.9 7.9 114 190-303 59-174 (748)
348 COG3629 DnrI DNA-binding trans 91.7 1.2 2.7E-05 38.6 8.4 65 183-251 152-216 (280)
349 KOG0546 HSP90 co-chaperone CPR 91.5 0.37 8E-06 42.7 5.1 105 161-269 233-356 (372)
350 COG2909 MalT ATP-dependent tra 91.5 7.4 0.00016 38.9 14.3 110 162-271 427-552 (894)
351 COG3947 Response regulator con 91.2 3.9 8.4E-05 35.6 10.7 56 228-283 285-340 (361)
352 KOG0529 Protein geranylgeranyl 91.0 11 0.00025 34.3 13.9 137 162-302 40-195 (421)
353 KOG4014 Uncharacterized conser 90.5 6.3 0.00014 31.9 10.6 129 147-285 70-233 (248)
354 PF10345 Cohesin_load: Cohesin 90.4 6.1 0.00013 38.7 13.0 95 186-280 303-428 (608)
355 TIGR03504 FimV_Cterm FimV C-te 90.4 1.5 3.2E-05 26.5 5.5 24 260-283 3-26 (44)
356 KOG1464 COP9 signalosome, subu 90.4 2 4.3E-05 37.0 8.2 129 161-289 38-224 (440)
357 KOG4014 Uncharacterized conser 89.9 9.3 0.0002 31.0 11.2 130 162-302 47-212 (248)
358 KOG0890 Protein kinase of the 89.8 4.3 9.4E-05 44.7 11.8 116 182-303 1668-1802(2382)
359 KOG0529 Protein geranylgeranyl 89.8 9.3 0.0002 34.9 12.3 137 162-302 87-241 (421)
360 PF04053 Coatomer_WDAD: Coatom 89.8 6.9 0.00015 36.6 12.1 32 219-250 344-375 (443)
361 COG4455 ImpE Protein of avirul 89.4 12 0.00025 31.4 12.0 55 158-212 9-63 (273)
362 TIGR03504 FimV_Cterm FimV C-te 89.4 0.91 2E-05 27.4 4.0 25 226-250 3-27 (44)
363 COG4455 ImpE Protein of avirul 89.2 2.3 5E-05 35.4 7.4 60 192-255 9-68 (273)
364 KOG1914 mRNA cleavage and poly 88.5 23 0.0005 33.7 20.1 137 165-305 346-487 (656)
365 KOG2581 26S proteasome regulat 88.4 17 0.00036 33.3 12.8 72 184-255 209-280 (493)
366 KOG2041 WD40 repeat protein [G 88.2 5.9 0.00013 38.7 10.4 29 184-212 796-824 (1189)
367 PF04053 Coatomer_WDAD: Coatom 88.2 6.7 0.00015 36.7 10.8 98 162-281 330-427 (443)
368 KOG0686 COP9 signalosome, subu 88.0 11 0.00024 34.4 11.5 99 184-283 150-256 (466)
369 KOG2041 WD40 repeat protein [G 87.8 19 0.00041 35.4 13.4 108 163-281 747-877 (1189)
370 smart00386 HAT HAT (Half-A-TPR 87.7 1.9 4.2E-05 23.1 4.6 26 237-262 2-27 (33)
371 smart00386 HAT HAT (Half-A-TPR 87.6 1.5 3.2E-05 23.7 4.0 31 270-300 1-31 (33)
372 PF09670 Cas_Cas02710: CRISPR- 87.4 12 0.00025 34.4 11.8 56 157-212 138-197 (379)
373 PF04190 DUF410: Protein of un 86.9 8.6 0.00019 33.2 10.2 60 186-245 51-113 (260)
374 PF13226 DUF4034: Domain of un 86.3 10 0.00022 33.0 10.2 112 158-273 8-150 (277)
375 COG3947 Response regulator con 85.6 4.3 9.4E-05 35.3 7.4 60 186-249 281-340 (361)
376 cd02682 MIT_AAA_Arch MIT: doma 85.4 6.2 0.00013 26.9 6.7 18 232-249 16-33 (75)
377 PF04212 MIT: MIT (microtubule 84.9 3 6.4E-05 27.7 5.1 19 232-250 15-33 (69)
378 PF10255 Paf67: RNA polymerase 84.6 5.9 0.00013 36.4 8.3 64 187-250 125-192 (404)
379 PHA02537 M terminase endonucle 84.3 1.7 3.7E-05 36.6 4.4 108 194-304 93-225 (230)
380 KOG0985 Vesicle coat protein c 84.0 8.4 0.00018 39.4 9.4 60 221-285 1103-1162(1666)
381 cd02681 MIT_calpain7_1 MIT: do 83.7 3.3 7E-05 28.3 4.8 19 232-250 16-34 (76)
382 KOG0985 Vesicle coat protein c 83.6 29 0.00062 35.8 12.8 137 161-302 1115-1325(1666)
383 PRK11619 lytic murein transgly 83.3 36 0.00077 33.7 13.6 118 162-284 253-374 (644)
384 COG5159 RPN6 26S proteasome re 82.9 32 0.00069 30.1 12.4 48 157-204 10-65 (421)
385 cd02679 MIT_spastin MIT: domai 82.9 2.7 5.9E-05 28.9 4.2 18 233-250 19-36 (79)
386 PF11817 Foie-gras_1: Foie gra 82.8 15 0.00033 31.4 9.8 66 184-249 178-245 (247)
387 KOG2758 Translation initiation 82.8 16 0.00035 32.3 9.7 84 167-250 112-195 (432)
388 PF14863 Alkyl_sulf_dimr: Alky 82.3 6.4 0.00014 30.5 6.5 47 226-272 74-120 (141)
389 PHA02537 M terminase endonucle 81.6 28 0.0006 29.4 10.5 93 162-255 95-211 (230)
390 cd02682 MIT_AAA_Arch MIT: doma 81.6 5.3 0.00011 27.2 5.1 27 187-213 9-35 (75)
391 PF11846 DUF3366: Domain of un 81.3 6.5 0.00014 32.1 6.8 32 222-253 144-175 (193)
392 PF07079 DUF1347: Protein of u 81.0 49 0.0011 31.0 14.5 119 162-284 18-156 (549)
393 PF12854 PPR_1: PPR repeat 80.9 4.7 0.0001 22.6 4.1 26 184-209 7-32 (34)
394 KOG2422 Uncharacterized conser 80.9 32 0.00068 33.0 11.5 121 162-282 250-404 (665)
395 PF14863 Alkyl_sulf_dimr: Alky 79.7 5.4 0.00012 30.9 5.4 50 257-306 71-120 (141)
396 COG5187 RPN7 26S proteasome re 79.3 43 0.00094 29.4 11.4 103 183-285 114-221 (412)
397 cd02680 MIT_calpain7_2 MIT: do 79.3 4.9 0.00011 27.4 4.4 17 234-250 18-34 (75)
398 PF12854 PPR_1: PPR repeat 79.2 5.5 0.00012 22.3 4.0 24 257-280 8-31 (34)
399 KOG2422 Uncharacterized conser 78.6 65 0.0014 31.0 14.6 122 161-287 295-450 (665)
400 PF10255 Paf67: RNA polymerase 78.6 3.9 8.4E-05 37.6 4.9 58 226-284 126-192 (404)
401 KOG1497 COP9 signalosome, subu 78.5 41 0.00089 29.9 10.7 98 185-283 104-211 (399)
402 PF05053 Menin: Menin; InterP 78.4 12 0.00027 35.5 8.1 69 182-250 275-346 (618)
403 TIGR03362 VI_chp_7 type VI sec 78.3 48 0.001 29.3 16.2 124 161-285 110-279 (301)
404 KOG3783 Uncharacterized conser 78.3 17 0.00036 34.5 8.9 66 224-289 451-524 (546)
405 PF08311 Mad3_BUB1_I: Mad3/BUB 78.0 27 0.00059 26.3 13.3 80 198-283 40-126 (126)
406 KOG2114 Vacuolar assembly/sort 77.9 14 0.00031 36.8 8.6 51 162-213 346-397 (933)
407 cd02683 MIT_1 MIT: domain cont 77.8 6.9 0.00015 26.8 4.9 17 234-250 18-34 (77)
408 PF10952 DUF2753: Protein of u 76.6 17 0.00037 27.4 6.8 29 187-215 4-32 (140)
409 PF13226 DUF4034: Domain of un 76.5 51 0.0011 28.7 11.1 113 192-305 8-148 (277)
410 PF11846 DUF3366: Domain of un 75.8 11 0.00024 30.7 6.6 42 170-212 131-172 (193)
411 PRK15180 Vi polysaccharide bio 75.2 8 0.00017 36.1 5.9 93 195-291 300-392 (831)
412 KOG3783 Uncharacterized conser 75.0 32 0.00069 32.7 9.8 99 167-267 250-349 (546)
413 KOG0890 Protein kinase of the 74.8 83 0.0018 35.6 13.8 125 162-288 1682-1836(2382)
414 COG1747 Uncharacterized N-term 74.7 52 0.0011 31.3 10.9 78 166-250 82-159 (711)
415 COG5107 RNA14 Pre-mRNA 3'-end 74.5 76 0.0017 29.7 12.8 76 172-251 30-105 (660)
416 smart00745 MIT Microtubule Int 74.3 9.4 0.0002 25.9 4.9 17 234-250 20-36 (77)
417 cd02679 MIT_spastin MIT: domai 74.3 6.7 0.00015 27.0 4.0 35 236-285 3-37 (79)
418 KOG0687 26S proteasome regulat 73.5 67 0.0015 28.7 12.0 102 183-285 103-210 (393)
419 PF09205 DUF1955: Domain of un 73.4 27 0.00059 26.8 7.3 53 232-284 96-148 (161)
420 PF10952 DUF2753: Protein of u 73.0 31 0.00067 26.0 7.4 78 156-256 7-88 (140)
421 cd02678 MIT_VPS4 MIT: domain c 72.8 11 0.00024 25.5 4.9 17 234-250 18-34 (75)
422 PF13041 PPR_2: PPR repeat fam 72.4 19 0.00041 21.8 5.6 28 185-212 4-31 (50)
423 PF09205 DUF1955: Domain of un 71.9 27 0.00058 26.9 7.0 50 163-212 99-148 (161)
424 cd02680 MIT_calpain7_2 MIT: do 71.4 8.6 0.00019 26.2 4.0 20 195-214 17-36 (75)
425 KOG2908 26S proteasome regulat 70.9 79 0.0017 28.4 10.6 88 196-283 87-184 (380)
426 COG5187 RPN7 26S proteasome re 70.3 49 0.0011 29.1 9.1 118 167-285 42-184 (412)
427 KOG0292 Vesicle coat complex C 70.1 1.3E+02 0.0027 30.8 12.8 128 187-314 994-1143(1202)
428 PF07219 HemY_N: HemY protein 69.4 34 0.00073 25.0 7.2 30 183-212 58-87 (108)
429 PF01535 PPR: PPR repeat; Int 69.2 8.8 0.00019 20.1 3.2 24 260-283 4-27 (31)
430 cd02684 MIT_2 MIT: domain cont 69.1 14 0.00031 25.1 4.7 17 234-250 18-34 (75)
431 PF08238 Sel1: Sel1 repeat; I 68.1 15 0.00032 20.6 4.2 10 239-248 25-34 (39)
432 PF04348 LppC: LppC putative l 67.3 1.8 3.9E-05 41.6 0.0 103 183-287 23-129 (536)
433 PF04212 MIT: MIT (microtubule 66.9 15 0.00033 24.2 4.6 27 187-213 8-34 (69)
434 smart00671 SEL1 Sel1-like repe 66.8 13 0.00028 20.4 3.7 14 199-212 20-33 (36)
435 KOG0686 COP9 signalosome, subu 66.5 1E+02 0.0022 28.5 10.7 90 160-249 160-256 (466)
436 PRK11619 lytic murein transgly 66.2 1.4E+02 0.0031 29.5 14.4 108 192-306 320-455 (644)
437 cd02677 MIT_SNX15 MIT: domain 65.5 16 0.00035 24.8 4.5 15 236-250 20-34 (75)
438 PF13041 PPR_2: PPR repeat fam 65.4 19 0.0004 21.8 4.5 30 256-285 3-32 (50)
439 cd02656 MIT MIT: domain contai 65.4 19 0.00042 24.2 4.9 17 234-250 18-34 (75)
440 COG4941 Predicted RNA polymera 64.7 1.1E+02 0.0023 27.6 13.4 135 162-301 268-410 (415)
441 TIGR00756 PPR pentatricopeptid 64.7 16 0.00034 19.5 3.8 26 187-212 3-28 (35)
442 KOG1463 26S proteasome regulat 64.1 43 0.00092 30.1 7.7 109 188-299 213-327 (411)
443 TIGR02710 CRISPR-associated pr 63.9 1.2E+02 0.0026 27.8 12.4 52 158-209 138-196 (380)
444 KOG0276 Vesicle coat complex C 63.6 55 0.0012 31.7 8.8 80 194-282 647-747 (794)
445 cd02677 MIT_SNX15 MIT: domain 63.6 11 0.00023 25.7 3.3 32 239-285 4-35 (75)
446 KOG0276 Vesicle coat complex C 62.8 1.5E+02 0.0034 28.9 11.5 47 162-213 649-695 (794)
447 smart00299 CLH Clathrin heavy 62.6 41 0.00088 25.5 6.9 117 161-299 18-134 (140)
448 COG3014 Uncharacterized protei 62.2 45 0.00098 29.9 7.5 45 169-213 40-87 (449)
449 COG1747 Uncharacterized N-term 61.7 1.5E+02 0.0033 28.3 16.3 131 165-298 113-247 (711)
450 PF10938 YfdX: YfdX protein; 61.2 79 0.0017 24.9 10.8 63 222-284 75-145 (155)
451 PF06957 COPI_C: Coatomer (COP 60.9 1.3E+02 0.0028 28.0 10.6 129 187-315 207-360 (422)
452 KOG1497 COP9 signalosome, subu 60.0 60 0.0013 28.9 7.8 84 221-305 102-195 (399)
453 PRK15490 Vi polysaccharide bio 59.5 94 0.002 30.2 9.8 79 162-246 20-98 (578)
454 PRK15490 Vi polysaccharide bio 58.8 95 0.002 30.2 9.7 66 218-288 38-103 (578)
455 cd02681 MIT_calpain7_1 MIT: do 58.4 25 0.00054 24.0 4.3 25 189-213 11-35 (76)
456 COG4941 Predicted RNA polymera 58.3 75 0.0016 28.5 8.2 93 165-263 311-406 (415)
457 COG4259 Uncharacterized protei 58.3 49 0.0011 24.0 5.8 29 184-212 72-100 (121)
458 PF00244 14-3-3: 14-3-3 protei 58.0 49 0.0011 28.1 7.1 50 201-250 143-197 (236)
459 KOG1464 COP9 signalosome, subu 57.9 37 0.00081 29.5 6.2 54 197-250 40-93 (440)
460 smart00777 Mad3_BUB1_I Mad3/BU 57.7 81 0.0017 23.9 7.5 58 218-281 65-124 (125)
461 COG3014 Uncharacterized protei 57.4 1.5E+02 0.0032 26.8 16.6 47 259-306 197-243 (449)
462 KOG0739 AAA+-type ATPase [Post 57.4 60 0.0013 28.8 7.4 16 235-250 23-38 (439)
463 KOG2114 Vacuolar assembly/sort 56.6 45 0.00097 33.5 7.2 54 192-250 342-396 (933)
464 PF09670 Cas_Cas02710: CRISPR- 56.1 1.2E+02 0.0026 27.8 9.7 63 186-251 133-198 (379)
465 KOG4279 Serine/threonine prote 55.7 69 0.0015 32.0 8.2 55 157-212 294-349 (1226)
466 KOG1538 Uncharacterized conser 54.9 83 0.0018 30.9 8.4 49 193-248 782-830 (1081)
467 PF09797 NatB_MDM20: N-acetylt 54.6 1.5E+02 0.0032 26.9 10.2 48 163-210 196-243 (365)
468 cd02683 MIT_1 MIT: domain cont 54.0 68 0.0015 21.9 8.3 24 190-213 12-35 (77)
469 KOG2561 Adaptor protein NUB1, 53.9 1.6E+02 0.0036 27.5 9.8 106 146-251 159-296 (568)
470 PF14929 TAF1_subA: TAF RNA Po 53.1 2.2E+02 0.0048 27.6 11.2 66 198-268 323-390 (547)
471 PF07219 HemY_N: HemY protein 52.8 88 0.0019 22.8 11.0 38 162-199 71-108 (108)
472 KOG0739 AAA+-type ATPase [Post 52.6 1E+02 0.0022 27.5 7.9 32 166-212 7-38 (439)
473 PF09797 NatB_MDM20: N-acetylt 52.5 42 0.0009 30.5 6.2 40 240-279 201-240 (365)
474 KOG2997 F-box protein FBX9 [Ge 52.3 33 0.00072 30.4 5.1 24 189-212 24-47 (366)
475 COG5600 Transcription-associat 52.0 1.2E+02 0.0025 27.8 8.4 63 189-254 182-252 (413)
476 COG5107 RNA14 Pre-mRNA 3'-end 51.9 2.1E+02 0.0046 27.0 13.0 123 162-288 409-534 (660)
477 PF02184 HAT: HAT (Half-A-TPR) 51.6 39 0.00085 18.8 3.6 26 271-297 2-27 (32)
478 KOG4459 Membrane-associated pr 51.1 86 0.0019 29.3 7.7 50 257-306 134-183 (471)
479 PF12753 Nro1: Nuclear pore co 51.0 24 0.00053 32.2 4.2 46 238-285 334-391 (404)
480 smart00777 Mad3_BUB1_I Mad3/BU 50.9 93 0.002 23.5 6.8 60 180-247 65-124 (125)
481 COG5536 BET4 Protein prenyltra 50.3 1.7E+02 0.0036 25.7 8.8 130 166-299 90-236 (328)
482 PF08311 Mad3_BUB1_I: Mad3/BUB 50.1 1.1E+02 0.0023 23.1 9.0 46 202-249 81-126 (126)
483 PF13812 PPR_3: Pentatricopept 49.2 41 0.00088 17.9 4.3 15 232-246 11-25 (34)
484 PF02064 MAS20: MAS20 protein 48.8 56 0.0012 24.6 5.3 28 228-255 69-96 (121)
485 PF10938 YfdX: YfdX protein; 48.8 1.3E+02 0.0028 23.6 9.8 94 157-250 9-145 (155)
486 PF12753 Nro1: Nuclear pore co 48.2 51 0.0011 30.2 5.8 14 237-250 377-390 (404)
487 smart00745 MIT Microtubule Int 48.2 44 0.00095 22.5 4.4 23 191-213 15-37 (77)
488 smart00101 14_3_3 14-3-3 homol 47.3 95 0.0021 26.5 7.1 51 200-250 144-199 (244)
489 smart00299 CLH Clathrin heavy 46.6 1.2E+02 0.0027 22.7 13.5 33 197-233 20-52 (140)
490 PF12583 TPPII_N: Tripeptidyl 45.6 90 0.002 23.8 5.8 36 232-267 86-121 (139)
491 COG4259 Uncharacterized protei 45.1 1.2E+02 0.0026 22.1 6.2 37 221-257 71-107 (121)
492 PF00244 14-3-3: 14-3-3 protei 45.1 1.9E+02 0.0042 24.5 9.7 68 239-306 143-228 (236)
493 KOG1538 Uncharacterized conser 45.0 92 0.002 30.6 7.1 50 230-283 781-831 (1081)
494 KOG0128 RNA-binding protein SA 44.9 3.5E+02 0.0077 27.5 12.6 118 163-285 92-219 (881)
495 PF14689 SPOB_a: Sensor_kinase 44.4 59 0.0013 21.0 4.3 29 184-212 23-51 (62)
496 cd00280 TRFH Telomeric Repeat 44.4 68 0.0015 26.1 5.4 43 191-238 118-160 (200)
497 PF02064 MAS20: MAS20 protein 44.0 65 0.0014 24.2 4.9 35 260-294 67-101 (121)
498 PF05053 Menin: Menin; InterP 43.6 2.2E+02 0.0048 27.6 9.3 62 166-227 295-363 (618)
499 cd00280 TRFH Telomeric Repeat 43.6 65 0.0014 26.2 5.1 44 228-272 117-160 (200)
500 KOG2908 26S proteasome regulat 43.5 2.2E+02 0.0048 25.7 8.8 88 162-249 87-184 (380)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=9.7e-22 Score=177.93 Aligned_cols=177 Identities=16% Similarity=0.228 Sum_probs=136.0
Q ss_pred ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 021175 117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLR 196 (316)
Q Consensus 117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 196 (316)
.|..+-|.+.|+.+....|.-.. ++.+++.... +.|+..+|..+|.+++...|+.+++.+|+|+++.+
T Consensus 299 qG~ldlAI~~Ykral~~~P~F~~-------Ay~NlanALk-----d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALELQPNFPD-------AYNNLANALK-----DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE 366 (966)
T ss_pred cccHHHHHHHHHHHHhcCCCchH-------HHhHHHHHHH-----hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 34455555556544444444442 2333333333 67888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 021175 197 RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL 276 (316)
Q Consensus 197 ~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 276 (316)
+|..++|...|+++++ ..|+.+.++.|||.+|.++|++++|+.+|+++++++|..++++.|+|..|..+|+.+.|+
T Consensus 367 ~~~~e~A~~ly~~al~----v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALE----VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred hccchHHHHHHHHHHh----hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 8888888888888888 688888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 277 KAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 277 ~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
.+|.+++.++|..++++.+|+.+++..|+..+|
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHH
Confidence 888888888888888888888888888877654
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=8.7e-22 Score=178.25 Aligned_cols=145 Identities=19% Similarity=0.260 Sum_probs=124.8
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
+.+|..+.|+..|+++++..|+.+++++|+|+++...|+.+||+++|.+++. +.|+++.+.+|||.+|.++|++++
T Consensus 297 yeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~----l~p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR----LCPNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred eccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhccchH
Confidence 3678888888888888888888888888888888888888888888888888 688888888888888888888888
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
|...|+++++..|+.+.++.|||.+|.++|++++|+.+|+++++++|..++++.++|..++.+|+..+|
T Consensus 373 A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 373 ATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888877654
No 3
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.80 E-value=3.3e-18 Score=138.58 Aligned_cols=145 Identities=17% Similarity=0.129 Sum_probs=137.7
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++|+. ++|++.++++|.|..++.+|++++
T Consensus 46 L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls----l~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 46 LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS----LAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh----cCCCccchhhhhhHHHHhCCChHH
Confidence 3999999999999999999999999999999999999999999999999999 799999999999999999999999
Q ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 241 GISQFETAVKL--QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 241 A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
|...|++|+.. .|..+..+-|+|.|..++|+++.|.++|+++++++|+++.+...++..+...|++-.|
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 99999999983 3455789999999999999999999999999999999999999999999999988655
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.79 E-value=2.7e-18 Score=134.88 Aligned_cols=128 Identities=12% Similarity=0.043 Sum_probs=120.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 021175 169 SAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETA 248 (316)
Q Consensus 169 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 248 (316)
-...++++++.+|+. +..+|.++...|++++|+.+|++++. .+|.+..++.++|.++...|++++|+..|+++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVM----AQPWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356789999999875 66789999999999999999999999 79999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175 249 VKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV 303 (316)
Q Consensus 249 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~ 303 (316)
++++|+++.+++++|.++..+|++++|+..|+++++++|+++..+.+++.+...+
T Consensus 85 l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 85 LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998877654
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=1.2e-17 Score=161.78 Aligned_cols=154 Identities=13% Similarity=0.139 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHH
Q 021175 147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYN 226 (316)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~ 226 (316)
++..+|..+. ..|++++|+..++++++.+|+...++..+|.++...|++++|+..++++++ .+|+++.+++
T Consensus 333 a~~~lg~~~~-----~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~----~~p~~~~~~~ 403 (615)
T TIGR00990 333 ALNLRGTFKC-----LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALK----LNSEDPDIYY 403 (615)
T ss_pred HHHHHHHHHH-----HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHH
Confidence 4444455554 899999999999999999999999999999999999999999999999999 6999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175 227 ALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY 306 (316)
Q Consensus 227 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~ 306 (316)
++|.++...|++++|++.|+++++++|++..++.++|.++..+|++++|+..|+++++..|+++.++..++.++...|++
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 021175 307 KGV 309 (316)
Q Consensus 307 ~~A 309 (316)
++|
T Consensus 484 ~~A 486 (615)
T TIGR00990 484 DEA 486 (615)
T ss_pred HHH
Confidence 765
No 6
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.8e-18 Score=150.24 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=140.3
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
-.++.++|+.+|++++++||....+|..+|.-|..+++...|++.|++|++ ++|.+..+|+.||.+|.-++...=|
T Consensus 342 lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd----i~p~DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 342 LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD----INPRDYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh----cCchhHHHHhhhhHHHHHhcchHHH
Confidence 678899999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
+-+|++|++..|+|...|..||.||.+.++.++|+++|++++.....+..++..+++++++++++++|
T Consensus 418 LyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 418 LYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998665
No 7
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=1.3e-17 Score=159.04 Aligned_cols=184 Identities=11% Similarity=-0.027 Sum_probs=153.1
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 021175 119 ENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRK 198 (316)
Q Consensus 119 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 198 (316)
+...|..+++.+...+|.....+......+...+... .....+++++|+..++++++.+|+++.++..+|.++...|
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g---~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMG---IFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC---CcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 3456666777777777766544433322222111100 0114567899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 021175 199 FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKA 278 (316)
Q Consensus 199 ~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 278 (316)
++++|+..|+++++ .+|+++.+++.+|.++...|++++|++.++++++++|.++..++.++.++...|++++|+..
T Consensus 353 ~~~~A~~~~~~Al~----l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 353 EYIVGSLLFKQANL----LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999999 79999999999999999999999999999999999999988888888888889999999999
Q ss_pred HHHHHhcC-CCChhHHHHHHHHHhhCCCCCCC
Q 021175 279 FEEVLLFD-PNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 279 ~~~al~~~-p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
++++++.+ |+++.++..++.++...|++++|
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA 460 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELA 460 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence 99999875 78899999999999999998766
No 8
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=3.7e-18 Score=156.34 Aligned_cols=179 Identities=13% Similarity=0.138 Sum_probs=155.2
Q ss_pred hhccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 021175 115 ANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVM 194 (316)
Q Consensus 115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 194 (316)
...+++++|..+|+.+..+++.-.-.+ ..+ +.+.....++|+|...|++++..+|.+-.+|+.+|.+|
T Consensus 432 SLQkdh~~Aik~f~RAiQldp~faYay-------TLl-----GhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy 499 (638)
T KOG1126|consen 432 SLQKDHDTAIKCFKRAIQLDPRFAYAY-------TLL-----GHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY 499 (638)
T ss_pred hhhhHHHHHHHHHHHhhccCCccchhh-------hhc-----CChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence 345678888888886666666554222 222 33344788999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 021175 195 LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS 274 (316)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 274 (316)
.++++++.|+-+|++|++ ++|.+......+|.++.+.|+.++|+..+++|+.++|.++-..+..|.++...+++++
T Consensus 500 ~Kqek~e~Ae~~fqkA~~----INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 500 LKQEKLEFAEFHFQKAVE----INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred eccchhhHHHHHHHhhhc----CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 999999999999999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 275 ALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 275 A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
|+..+++..++-|++..++..+++++.++|+.+.|
T Consensus 576 al~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 576 ALQELEELKELVPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence 99999999999999999999999999999987655
No 9
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=2e-18 Score=158.01 Aligned_cols=154 Identities=20% Similarity=0.322 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHH
Q 021175 147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYN 226 (316)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~ 226 (316)
+|...|+.|. .+++++.|++.|+++++++|+.+.+|..+|.-+....++|.|..+|++|+. .+|.+..+|+
T Consensus 423 sWca~GNcfS-----LQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwY 493 (638)
T KOG1126|consen 423 SWCALGNCFS-----LQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWY 493 (638)
T ss_pred HHHHhcchhh-----hhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHH
Confidence 4556677777 889999999999999999999999999999999999999999999999999 7999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175 227 ALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY 306 (316)
Q Consensus 227 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~ 306 (316)
.+|.+|.++++++.|.-+|++|++++|.+......+|.++.++|+.++|+..|++|+.++|.++-..+..+.++..++++
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 021175 307 KGV 309 (316)
Q Consensus 307 ~~A 309 (316)
++|
T Consensus 574 ~ea 576 (638)
T KOG1126|consen 574 VEA 576 (638)
T ss_pred HHH
Confidence 766
No 10
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.1e-16 Score=144.19 Aligned_cols=189 Identities=22% Similarity=0.291 Sum_probs=165.7
Q ss_pred hhhhhHHHHHHHH-hhccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcC
Q 021175 102 SFGSSSWLISARV-ANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSG 180 (316)
Q Consensus 102 ~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 180 (316)
..-..+|+.+++. +..++.+++.++|..+.++-++..++.+.+ +-++...++++.|.+.|.+++.+.
T Consensus 343 ~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYl------------gmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 343 PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYL------------GMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHH------------HHHHHHhccHHHHHHHHHHHHhcC
Confidence 4445678888888 788999999999999999999988666533 344558999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 021175 181 DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ---DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVT 257 (316)
Q Consensus 181 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 257 (316)
|.++-....+|.+.+..+.|.+|..+|+++++..+...+ .-...+.|||.++.+.+++++|+..+++++.+.|.++.
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence 999999999999999999999999999999965443232 34567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175 258 AWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR 302 (316)
Q Consensus 258 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~ 302 (316)
.+..+|.+|..+|+++.|+++|.+++.++|++..+...|+...+.
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998887777765444
No 11
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.76 E-value=1.8e-16 Score=131.09 Aligned_cols=134 Identities=19% Similarity=0.243 Sum_probs=122.8
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH-HHcCC--H
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY-VREGK--L 238 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~-~~~g~--~ 238 (316)
..++.++++..++++++.+|++++.|..+|.++...|++++|+..|+++++ ++|+++.++.++|.++ ...|+ +
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~----l~P~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ----LRGENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhcCCCCc
Confidence 356778999999999999999999999999999999999999999999999 7999999999999975 67787 5
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175 239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL 299 (316)
Q Consensus 239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l 299 (316)
++|.+.++++++.+|++..+++++|.++...|++++|+.+|+++++++|.+.+-...+..+
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i 187 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESI 187 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998876555444443
No 12
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.3e-16 Score=140.72 Aligned_cols=178 Identities=17% Similarity=0.193 Sum_probs=158.3
Q ss_pred ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 021175 117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLR 196 (316)
Q Consensus 117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 196 (316)
-++++.|...|+.+..+++... .++..+|+-| +..++...|++.|++|++++|.+-.+|+.+|++|.-
T Consensus 343 r~eHEKAv~YFkRALkLNp~~~-------~aWTLmGHEy-----vEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 343 RSEHEKAVMYFKRALKLNPKYL-------SAWTLMGHEY-----VEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred HHhHHHHHHHHHHHHhcCcchh-------HHHHHhhHHH-----HHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 3567888888887777777665 3444444444 499999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 021175 197 RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL 276 (316)
Q Consensus 197 ~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 276 (316)
++...=|+-+|++|++ ..|+++..|..||.||.+.++.++|+++|++|+........++..||..|.++++.++|.
T Consensus 411 m~Mh~YaLyYfqkA~~----~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALE----LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred hcchHHHHHHHHHHHh----cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999 799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-------cCCCChhHHHHHHHHHhhCCCCCCCC
Q 021175 277 KAFEEVLL-------FDPNNKVARPRRDALKDRVPLYKGVP 310 (316)
Q Consensus 277 ~~~~~al~-------~~p~~~~a~~~l~~l~~~~~~~~~A~ 310 (316)
.+|++.++ .+|+...+..-|+.-..+.+++++|.
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 99999998 56666777777888889999988763
No 13
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.74 E-value=9.1e-16 Score=129.19 Aligned_cols=180 Identities=13% Similarity=0.101 Sum_probs=151.7
Q ss_pred hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175 116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML 195 (316)
Q Consensus 116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 195 (316)
..++.+.+.+.++.+....+... ..+..++..+. ..|++++|++.++++++..|++...+.++|.++.
T Consensus 43 ~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~-----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHDPDDY-------LAYLALALYYQ-----QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HCCCHHHHHHHHHHHHHhCcccH-------HHHHHHHHHHH-----HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 34566666667764444433332 23333344444 8899999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 021175 196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSA 275 (316)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 275 (316)
..|++++|++.++++++.. ..+.....+.++|.++...|++++|.+.++++++.+|++...+..+|.++...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDP--LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999831 13566778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 276 LKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 276 ~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
...++++++..|+++..+..++.+....|+.+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999989988899999988887665
No 14
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.73 E-value=3.6e-16 Score=131.70 Aligned_cols=144 Identities=19% Similarity=0.238 Sum_probs=136.8
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
..|++++|++.++++++.+|++..++..+|.++...|++++|++.++++++ ..|.+..++.++|.++...|++++|
T Consensus 43 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~~~g~~~~A 118 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT----LNPNNGDVLNNYGTFLCQQGKYEQA 118 (234)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHcccHHHH
Confidence 899999999999999999999999999999999999999999999999999 6888899999999999999999999
Q ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 242 ISQFETAVKLQ--PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 242 ~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
++.++++++.. |.....+.++|.++...|++++|...++++++.+|++..++..++.++...|++++|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 119 MQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999864 556788999999999999999999999999999999999999999999999998765
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.73 E-value=6.6e-16 Score=149.57 Aligned_cols=162 Identities=13% Similarity=0.212 Sum_probs=142.4
Q ss_pred hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175 116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML 195 (316)
Q Consensus 116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 195 (316)
..++.+.|...++.+....+.... +++.++..+. ..|++++|+..++++++.+|+++.+++.+|.++.
T Consensus 343 ~~g~~~eA~~~~~kal~l~P~~~~-------~~~~la~~~~-----~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELDPRVTQ-------SYIKRASMNL-----ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF 410 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCCCcHH-------HHHHHHHHHH-----HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 356677777788766655555442 3333444444 7899999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 021175 196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSA 275 (316)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 275 (316)
..|++++|+.+|+++++ .+|++..++.++|.++..+|++++|+..|+++++.+|+++.++..+|.++..+|++++|
T Consensus 411 ~~g~~~~A~~~~~kal~----l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSID----LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred HcCCHHHHHHHHHHHHH----cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence 99999999999999999 79999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHH
Q 021175 276 LKAFEEVLLFDPNNKVAR 293 (316)
Q Consensus 276 ~~~~~~al~~~p~~~~a~ 293 (316)
++.|+++++++|++...+
T Consensus 487 ~~~~~~Al~l~p~~~~~~ 504 (615)
T TIGR00990 487 IEKFDTAIELEKETKPMY 504 (615)
T ss_pred HHHHHHHHhcCCcccccc
Confidence 999999999999865443
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=3e-16 Score=156.44 Aligned_cols=142 Identities=17% Similarity=0.179 Sum_probs=129.0
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
..|++++|+..++++++.+|+ +.++.++|.++.+.|++++|++.|+++++ .+|+++.++.++|.++...|++++|
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~----l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALE----LEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 459999999999999999996 88999999999999999999999999999 7999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCC
Q 021175 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKG 308 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~ 308 (316)
++.|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++.......+.+..+..+++.
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~ 729 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRR 729 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888888877776665543
No 17
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.73 E-value=6e-16 Score=136.30 Aligned_cols=101 Identities=14% Similarity=0.128 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHH
Q 021175 147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYN 226 (316)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~ 226 (316)
.+...|..+. ..|++++|+..|+++++.+|+++.+++++|.++...|++++|++.|+++++ ++|++..++.
T Consensus 66 ~~~~~g~~~~-----~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~~~a~~ 136 (296)
T PRK11189 66 LHYERGVLYD-----SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE----LDPTYNYAYL 136 (296)
T ss_pred HHHHHHHHHH-----HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHH
Confidence 3444455554 789999999999999999999999999999999999999999999999999 6999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 021175 227 ALGVSYVREGKLDKGISQFETAVKLQPGYV 256 (316)
Q Consensus 227 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 256 (316)
++|.++...|++++|++.++++++.+|+++
T Consensus 137 ~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 137 NRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999888887763
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=5e-16 Score=154.82 Aligned_cols=144 Identities=16% Similarity=0.120 Sum_probs=137.4
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
...|++++|+..++++++.+|+....+..++......|++++|+..++++++ .+|+ +.++.++|.++.+.|++++
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~----l~P~-~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN----IAPS-ANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCC-HHHHHHHHHHHHHCCCHHH
Confidence 4889999999999999999999988888888888888999999999999999 6886 8999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
|++.|+++++++|+++.++.++|.++...|++++|+..|+++++++|+++.++.+++.++...|++++|
T Consensus 628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998765
No 19
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.71 E-value=1.6e-15 Score=123.10 Aligned_cols=178 Identities=14% Similarity=0.110 Sum_probs=154.2
Q ss_pred hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175 116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML 195 (316)
Q Consensus 116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 195 (316)
..++..+|....+.+...+|... .++..++.+|. ..|+.+.|.+.|+++++++|++.++++|.|..++
T Consensus 47 ~~gd~~~A~~nlekAL~~DPs~~-------~a~~~~A~~Yq-----~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 47 QQGDYAQAKKNLEKALEHDPSYY-------LAHLVRAHYYQ-----KLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HCCCHHHHHHHHHHHHHhCcccH-------HHHHHHHHHHH-----HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45677776666775555666555 45555566666 8999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 021175 196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSA 275 (316)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 275 (316)
.+|++++|...|++|+.. ...+..+..+-|+|.|..+.|+++.|.++|+++++++|+.+.....++..+++.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~--P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALAD--PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhC--CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999981 123456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHhhCCCCC
Q 021175 276 LKAFEEVLLFDPNNKVARPRRDALKDRVPLYK 307 (316)
Q Consensus 276 ~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~ 307 (316)
..++++....-+-..+......++.+.+|+-.
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHH
Confidence 99999999888878888888888888888754
No 20
>PRK12370 invasion protein regulator; Provisional
Probab=99.70 E-value=1.5e-15 Score=144.92 Aligned_cols=170 Identities=10% Similarity=-0.100 Sum_probs=146.5
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 021175 120 NVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKF 199 (316)
Q Consensus 120 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 199 (316)
...|...++.+...+|..... +..+|..+. ..|++++|+..++++++.+|+++.+++.+|.++...|+
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a-------~~~lg~~~~-----~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~ 387 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQA-------LGLLGLINT-----IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ 387 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHH-----HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 556666777666666666533 333344443 78999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Q 021175 200 YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ-PGYVTAWNNLGDAYEKKKDLKSALKA 278 (316)
Q Consensus 200 ~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 278 (316)
+++|+..++++++ .+|.++..++.++.+++..|++++|++.++++++.+ |+++.++.++|.++..+|++++|...
T Consensus 388 ~~eAi~~~~~Al~----l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~ 463 (553)
T PRK12370 388 LEEALQTINECLK----LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL 463 (553)
T ss_pred HHHHHHHHHHHHh----cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999 799988887778888888999999999999999875 78899999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175 279 FEEVLLFDPNNKVARPRRDALKDRVPL 305 (316)
Q Consensus 279 ~~~al~~~p~~~~a~~~l~~l~~~~~~ 305 (316)
+++.....|++..+...++..+...|+
T Consensus 464 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 464 TKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHhhhccchhHHHHHHHHHHHhccHH
Confidence 999999999988888888877776664
No 21
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=3.7e-16 Score=131.57 Aligned_cols=121 Identities=24% Similarity=0.378 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 021175 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG 263 (316)
Q Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 263 (316)
++-+-+-|+-.++.++|++|+..|.+||+ ++|.++..|.|.+.+|.++|+++.|++.++.|+.+||++..+|..||
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~----l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIE----LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh----cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 34567788999999999999999999999 79999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCC
Q 021175 264 DAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKG 308 (316)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~ 308 (316)
.+|..+|++++|++.|+++++++|++...+.+|....++++.-+.
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~ 201 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKS 201 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999888763
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.70 E-value=1.7e-15 Score=146.98 Aligned_cols=146 Identities=11% Similarity=0.048 Sum_probs=136.6
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPA----ATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE 235 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~ 235 (316)
+...|++++|+..++++++.+|+++.++.++|.++...|++++ |+..|+++++ .+|+++.++.++|.++...
T Consensus 222 l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~----l~P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ----FNSDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHC
Confidence 4478999999999999999999999999999999999999986 8999999999 6999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 236 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
|++++|+..++++++++|+++.++.++|.++...|++++|+..|+++++.+|++......++.++...|++++|
T Consensus 298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA 371 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEA 371 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999888777788888889988765
No 23
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.69 E-value=1.1e-15 Score=118.70 Aligned_cols=126 Identities=13% Similarity=0.146 Sum_probs=118.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175 171 KELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVK 250 (316)
Q Consensus 171 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 250 (316)
+.++++++.+|++..+.+.+|..+...|++++|.+.++++++ .+|.++.++.++|.++...|++++|++.++++++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA----YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999999999999 6999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 021175 251 LQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALK 300 (316)
Q Consensus 251 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~ 300 (316)
.+|+++..++++|.++...|++++|+..++++++++|++.........+.
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 129 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAE 129 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999988665554443
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.67 E-value=8.1e-15 Score=142.36 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=132.7
Q ss_pred HHHhhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH
Q 021175 160 VLVRRELDLSAKELQEQVRSGD-ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL 238 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~ 238 (316)
+...|++++|+..++++++.+| ........++.++...|++++|+..++++++ .+|+++.+++++|.++...|++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~----~~p~~~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA----RGLDGAALRRSLGLAYYQSGRS 262 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHcCCc
Confidence 3467889999999998888876 3344556678889999999999999999999 6899999999999999999999
Q ss_pred HH----HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 239 DK----GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 239 ~~----A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
++ |+..|+++++++|+++.++.++|.++...|++++|+..++++++++|+++.++..++.++...|++++|
T Consensus 263 ~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 263 REAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 96 899999999999999999999999999999999999999999999999999999999999999998765
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.66 E-value=1.9e-14 Score=148.29 Aligned_cols=190 Identities=16% Similarity=0.091 Sum_probs=148.0
Q ss_pred hccchHHHHHHHHHHhhhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 021175 116 NASENVQMDAVYEIGELFELGIQLSY--LLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAV 193 (316)
Q Consensus 116 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 193 (316)
..++.++|...++.+....+...... ...............+......|++++|++.|+++++.+|+++.++..+|.+
T Consensus 315 ~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~ 394 (1157)
T PRK11447 315 QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDV 394 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45666777777775555444332110 0000000000011123345589999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHH------------------------------------------HHH
Q 021175 194 MLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNAL------------------------------------------GVS 231 (316)
Q Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~l------------------------------------------g~~ 231 (316)
+...|++++|+++|+++++ .+|++..++..+ |.+
T Consensus 395 ~~~~g~~~eA~~~y~~aL~----~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~ 470 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALR----MDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEA 470 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999999999999 577666555444 445
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 232 YVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 232 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
+...|++++|++.|+++++++|+++.+++.+|.+|...|++++|+..++++++.+|++++++..++......+++++|
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~A 548 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAA 548 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999998887777776544
No 26
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.66 E-value=4.7e-15 Score=130.64 Aligned_cols=125 Identities=23% Similarity=0.288 Sum_probs=115.8
Q ss_pred hhhHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH
Q 021175 163 RRELDLSAKELQEQVRSGD----ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL 238 (316)
Q Consensus 163 ~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~ 238 (316)
.+..+.++..+.+++...| ..+..|+++|.++...|++++|+..|+++++ .+|+++.+++++|.++...|++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~----l~P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA----LRPDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHCCCH
Confidence 4566778888888886444 3477899999999999999999999999999 7999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 021175 239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV 291 (316)
Q Consensus 239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 291 (316)
++|++.|+++++++|++..++.++|.++...|++++|++.++++++++|+++.
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999999999999999999999999873
No 27
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.66 E-value=7.1e-15 Score=151.45 Aligned_cols=177 Identities=12% Similarity=0.094 Sum_probs=133.4
Q ss_pred ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHH-----------
Q 021175 117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASAT----------- 185 (316)
Q Consensus 117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----------- 185 (316)
.++.+.|...++.+....+... .++..+|..+. ..|++++|+..|+++++.+|+...
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~-------~a~~~Lg~~~~-----~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDS-------EALGALGQAYS-----QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 3455566666665555444433 23333444444 788888888888888888876532
Q ss_pred ---HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 021175 186 ---EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNL 262 (316)
Q Consensus 186 ---~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 262 (316)
.....|.++...|++++|++.|+++++ .+|+++.++..+|.++..+|++++|++.|+++++++|++..++..+
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~----~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQ----VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 123457777888888888888888888 6888888888999999999999999999999999999887666554
Q ss_pred HHH------------------------------------------HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 021175 263 GDA------------------------------------------YEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALK 300 (316)
Q Consensus 263 g~~------------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~ 300 (316)
+.+ +...|++++|++.|+++++++|+++.++..++.++
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 443 44678899999999999999999999999999999
Q ss_pred hhCCCCCCC
Q 021175 301 DRVPLYKGV 309 (316)
Q Consensus 301 ~~~~~~~~A 309 (316)
...|++++|
T Consensus 506 ~~~G~~~~A 514 (1157)
T PRK11447 506 RQAGQRSQA 514 (1157)
T ss_pred HHcCCHHHH
Confidence 999888766
No 28
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.66 E-value=1.3e-14 Score=123.63 Aligned_cols=149 Identities=16% Similarity=0.101 Sum_probs=130.3
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc-
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASA---TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE- 235 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~- 235 (316)
+...|++++|+..+++++..+|+++ .+++.+|.++...|++++|+..++++++..|. +|....+++.+|.++...
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~g~~~~~~~ 121 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAYYLRGLSNYNQI 121 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHHHHHHHHHHHhc
Confidence 3389999999999999999999875 68899999999999999999999999995432 334445899999999987
Q ss_pred -------CCHHHHHHHHHHHHHhCCCcHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 021175 236 -------GKLDKGISQFETAVKLQPGYVTAW-----------------NNLGDAYEKKKDLKSALKAFEEVLLFDPNN-- 289 (316)
Q Consensus 236 -------g~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 289 (316)
|++++|++.++++++.+|++..++ ..+|.+|...|++++|+..++++++..|+.
T Consensus 122 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (235)
T TIGR03302 122 DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA 201 (235)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc
Confidence 899999999999999999985432 467889999999999999999999997765
Q ss_pred -hhHHHHHHHHHhhCCCCCCC
Q 021175 290 -KVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 290 -~~a~~~l~~l~~~~~~~~~A 309 (316)
++++..++.++..+|++++|
T Consensus 202 ~~~a~~~l~~~~~~lg~~~~A 222 (235)
T TIGR03302 202 TEEALARLVEAYLKLGLKDLA 222 (235)
T ss_pred hHHHHHHHHHHHHHcCCHHHH
Confidence 58999999999999999776
No 29
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.65 E-value=8.5e-15 Score=114.97 Aligned_cols=105 Identities=15% Similarity=0.051 Sum_probs=100.7
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
...|++++|+..|++++..+|++..++.++|.++...|++++|+..|+++++ .+|+++.+++++|.++...|++++
T Consensus 35 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~----l~p~~~~a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 35 WQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM----LDASHPEPVYQTGVCLKMMGEPGL 110 (144)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCCCcHHHHHHHHHHHHcCCHHH
Confidence 4899999999999999999999999999999999999999999999999999 799999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 021175 241 GISQFETAVKLQPGYVTAWNNLGDAYEKK 269 (316)
Q Consensus 241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 269 (316)
|++.|+++++++|+++..+.++|.+....
T Consensus 111 Ai~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 111 AREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999998876543
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.64 E-value=2e-14 Score=144.02 Aligned_cols=145 Identities=19% Similarity=0.168 Sum_probs=138.5
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
...|++++|++.+++.++.+|++..+++.+|.++...|++++|+++|+++++ ..|+++.++.++|.++...|+ ++
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK----KAPDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCc-HH
Confidence 3789999999999999999999999999999999999999999999999999 689999999999999999999 88
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCC
Q 021175 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVP 310 (316)
Q Consensus 241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~ 310 (316)
|++.++++++..|+++..+..+|.++...|++++|..+|+++++.+|.++.++..++.++.+.|++++|.
T Consensus 822 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 891 (899)
T TIGR02917 822 ALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR 891 (899)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987763
No 31
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.63 E-value=1e-14 Score=113.14 Aligned_cols=118 Identities=13% Similarity=0.150 Sum_probs=105.7
Q ss_pred HHcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 021175 177 VRSG-DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY 255 (316)
Q Consensus 177 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 255 (316)
..+. ++.-+..+.+|..++..|++++|+..|+-+.. .+|.++..|++||.++..+|++++|++.|.+|+.++|++
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~----~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI----YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 4456 67778899999999999999999999999999 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCChhHHHHHHH
Q 021175 256 VTAWNNLGDAYEKKKDLKSALKAFEEVLLFD---PNNKVARPRRDA 298 (316)
Q Consensus 256 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~l~~ 298 (316)
+.+++++|.|+...|+.+.|.+.|+.++... |.+......-..
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence 9999999999999999999999999999886 444444433333
No 32
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=6.5e-15 Score=133.31 Aligned_cols=159 Identities=18% Similarity=0.215 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC----------
Q 021175 146 LGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD---------- 215 (316)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---------- 215 (316)
.+|..+|.... .+++-..|+..++++++++|++-+++..||..|...|.-.+|..++++-+...+
T Consensus 320 eAW~~LG~~qa-----ENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~ 394 (579)
T KOG1125|consen 320 EAWQKLGITQA-----ENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE 394 (579)
T ss_pred HHHHHhhhHhh-----hccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc
Confidence 34555555554 677778899999999999999999999999999999999999999999887431
Q ss_pred ---------------------------CCCc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 021175 216 ---------------------------GDDQ--DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY 266 (316)
Q Consensus 216 ---------------------------~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 266 (316)
...| .+++++..||.+|.-.|+|++|+++|+.|++.+|++...|+.||..+
T Consensus 395 ~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtL 474 (579)
T KOG1125|consen 395 NEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATL 474 (579)
T ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHh
Confidence 0133 56788999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 267 EKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 267 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
..-.+.++|+..|++|+++.|++..+++++|..+..+|.|++|
T Consensus 475 AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 475 ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 9999999999999999999999999999999999999999876
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.62 E-value=5.2e-14 Score=128.86 Aligned_cols=144 Identities=21% Similarity=0.176 Sum_probs=87.7
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCcc-----HHHHHHHHHHHHHHcC
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQD-----LAQVYNALGVSYVREG 236 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~-----~~~~~~~lg~~~~~~g 236 (316)
..|++++|+..|+++++.+|....++..++.++...|++++|++.++++++. .|. ....+..+|.++...|
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL----GGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHHhCC
Confidence 5666666666666666666666666666666666666666666666666653 222 1234455666666666
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHhhCCCCCCC
Q 021175 237 KLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN-KVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 237 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~l~~l~~~~~~~~~A 309 (316)
++++|++.++++++.+|++..+++.+|.++...|++++|++.++++++.+|++ ..++..++.++...|++++|
T Consensus 195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666666666666666666666666666666666666665554 23445555555555555443
No 34
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.61 E-value=9.5e-14 Score=127.14 Aligned_cols=131 Identities=21% Similarity=0.235 Sum_probs=85.5
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHHHcCCHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDL-AQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~-~~~~~~lg~~~~~~g~~~~ 240 (316)
..|++++|++.++++++.+|+...++..+|.++...|++++|++.++++++ .+|.+ ..++..++.+|...|++++
T Consensus 192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEE----QDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HChhhHHHHHHHHHHHHHHcCCHHH
Confidence 566667777777777666666666666777777777777777777777666 34443 3455666666767777777
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 021175 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRD 297 (316)
Q Consensus 241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~ 297 (316)
|++.++++++.+|+.... ..+|.++.+.|++++|...++++++.+|++......++
T Consensus 268 A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 268 GLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred HHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 777777776666655433 66666677777777777777777766666654443333
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=1e-14 Score=127.73 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=121.5
Q ss_pred HHhhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH
Q 021175 161 LVRRELDLSAKELQEQVRSG--DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL 238 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~ 238 (316)
...++++++...++++.... +.++..+..+|.++.+.|++++|++.|+++++ .+|++..+...++.++...|++
T Consensus 121 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~P~~~~~~~~l~~~li~~~~~ 196 (280)
T PF13429_consen 121 YRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE----LDPDDPDARNALAWLLIDMGDY 196 (280)
T ss_dssp HHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH----H-TT-HHHHHHHHHHHCTTCHH
T ss_pred HHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHCCCh
Confidence 37889999999999977655 67889999999999999999999999999999 6999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCCC
Q 021175 239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVPV 311 (316)
Q Consensus 239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~~ 311 (316)
+++.+.++...+..|+++..+..+|.++..+|++++|+.+|+++++.+|+++.....++.++...|+.++|..
T Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 197 DEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999988899999999999999999999999999999999999999999999999999999988743
No 36
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.59 E-value=1.6e-13 Score=137.54 Aligned_cols=144 Identities=20% Similarity=0.224 Sum_probs=88.0
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
..|++++|+..++++++.+|.+...+..++..+...|++++|++.++++++ ..|.+...+..+|.++...|++++|
T Consensus 545 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 545 RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD----AAPDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 344555555555555555555555555555555555555555555555555 3555566666666666666666666
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
++.|+++++.+|+++.++..+|.++...|++++|...|+++++.+|++..++..++.++...|++++|
T Consensus 621 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 621 VSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666665443
No 37
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=5.3e-14 Score=127.51 Aligned_cols=199 Identities=16% Similarity=0.138 Sum_probs=148.9
Q ss_pred hhHHHHHHHH-hhccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH----H--------------------
Q 021175 105 SSSWLISARV-ANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIR----Q-------------------- 159 (316)
Q Consensus 105 ~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------------------- 159 (316)
.-+|.-...+ ....++..+....+.+..++|.....-..+.+++++.+.-...- .
T Consensus 319 aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~ 398 (579)
T KOG1125|consen 319 AEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDF 398 (579)
T ss_pred HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccc
Confidence 4456665555 34445556666667666677766544333334443322211100 0
Q ss_pred -----HHHhhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 021175 160 -----VLVRRELDLSAKELQEQVRSGD--ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY 232 (316)
Q Consensus 160 -----~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~ 232 (316)
.........-.+.|-++....| .++++...||.+|...|+|++|+++|+.|+. .+|++...|+.||.++
T Consensus 399 ~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~----v~Pnd~~lWNRLGAtL 474 (579)
T KOG1125|consen 399 ENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ----VKPNDYLLWNRLGATL 474 (579)
T ss_pred cCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh----cCCchHHHHHHhhHHh
Confidence 0111123344566666767777 6899999999999999999999999999999 7999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------hhHHHHHHHHHhh
Q 021175 233 VREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN----------KVARPRRDALKDR 302 (316)
Q Consensus 233 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------~~a~~~l~~l~~~ 302 (316)
..-.+.++|+..|++|+++.|++..+++|+|.++..+|.|++|.++|-+++.+.+.. ..+|..|......
T Consensus 475 AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~ 554 (579)
T KOG1125|consen 475 ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSA 554 (579)
T ss_pred cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997751 2467777666666
Q ss_pred CCCCC
Q 021175 303 VPLYK 307 (316)
Q Consensus 303 ~~~~~ 307 (316)
.++.+
T Consensus 555 ~~~~D 559 (579)
T KOG1125|consen 555 MNRSD 559 (579)
T ss_pred cCCch
Confidence 66554
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.8e-14 Score=128.09 Aligned_cols=156 Identities=18% Similarity=0.178 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHH
Q 021175 146 LGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVY 225 (316)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~ 225 (316)
.++...|.+++ ..|+.-.|.+.++++++.+|.....|..+|.+|....+.++-.+.|.+|.+ ++|.++.+|
T Consensus 327 ~al~~~gtF~f-----L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~----ldp~n~dvY 397 (606)
T KOG0547|consen 327 EALLLRGTFHF-----LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAED----LDPENPDVY 397 (606)
T ss_pred HHHHHhhhhhh-----hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHh----cCCCCCchh
Confidence 34445555554 677888888888888888887777788888888888888888888888888 688888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175 226 NALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPL 305 (316)
Q Consensus 226 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~ 305 (316)
+..|.+++-.+++++|+..|+++++++|++.-++..++.+.++++++++++..|+++.+.-|+.++.+...+++....++
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq 477 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ 477 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888777777
Q ss_pred CCCCC
Q 021175 306 YKGVP 310 (316)
Q Consensus 306 ~~~A~ 310 (316)
+++|.
T Consensus 478 Fd~A~ 482 (606)
T KOG0547|consen 478 FDKAV 482 (606)
T ss_pred HHHHH
Confidence 76553
No 39
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.57 E-value=1.9e-13 Score=131.82 Aligned_cols=129 Identities=10% Similarity=0.023 Sum_probs=114.5
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD 239 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~ 239 (316)
....|.+++|...++.+++..|++..++.+++.++.+.+++++|...++++++ .+|+++.+++.+|.++.+.|+++
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS----GGSSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh----cCCCCHHHHHHHHHHHHHhcchH
Confidence 33888999999999999999999999999999999999999999999999999 68999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175 240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292 (316)
Q Consensus 240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 292 (316)
+|++.|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...
T Consensus 172 ~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 172 QADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 99999999999888899999999999999999999999999999876654444
No 40
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=7.5e-14 Score=117.73 Aligned_cols=114 Identities=21% Similarity=0.295 Sum_probs=107.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 021175 156 VIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE 235 (316)
Q Consensus 156 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~ 235 (316)
.+...+..++|++|+..|.++++++|+++..|.+.+.+|.+.|+++.|++-.+.++. ++|.+..+|..||.+|..+
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~----iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS----IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh----cChHHHHHHHHHHHHHHcc
Confidence 345566999999999999999999999999999999999999999999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 021175 236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLK 273 (316)
Q Consensus 236 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 273 (316)
|++++|++.|++|++++|++...+.+|..+-.++++..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999998888777655
No 41
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.56 E-value=2.3e-13 Score=112.54 Aligned_cols=109 Identities=14% Similarity=0.151 Sum_probs=103.5
Q ss_pred cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCC--HH
Q 021175 197 RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY-EKKKD--LK 273 (316)
Q Consensus 197 ~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~ 273 (316)
.++.++++..++++++ .+|++...|..+|.+|...|++++|++.|+++++++|+++.++.++|.++ ...|+ ++
T Consensus 52 ~~~~~~~i~~l~~~L~----~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIR----ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 6778999999999999 69999999999999999999999999999999999999999999999975 67787 59
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 274 SALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 274 ~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
+|...++++++.+|++..++..++..+...|++++|
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~A 163 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQA 163 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999866
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.5e-13 Score=122.20 Aligned_cols=156 Identities=14% Similarity=0.252 Sum_probs=136.6
Q ss_pred ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 021175 117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLR 196 (316)
Q Consensus 117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 196 (316)
-++...+...+..+..+.+..... ++.++..|. +..+-++-.+.|.++.+++|+++++|+..|.+++-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-------yI~~a~~y~-----d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-------YIKRAAAYA-----DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL 406 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-------HHHHHHHHh-----hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH
Confidence 345555555665555555444322 333444444 88889999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 021175 197 RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL 276 (316)
Q Consensus 197 ~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 276 (316)
.+++++|+.-|++++. ++|++..++..++.+.++++++++++..|+++.+..|+.++++...|+++-.++++++|.
T Consensus 407 L~q~e~A~aDF~Kai~----L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAIS----LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHHhh----cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHH
Confidence 9999999999999999 799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC
Q 021175 277 KAFEEVLLFDPN 288 (316)
Q Consensus 277 ~~~~~al~~~p~ 288 (316)
+.|.+++++.|.
T Consensus 483 k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 483 KQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHhhccc
Confidence 999999999998
No 43
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.55 E-value=2.6e-13 Score=112.47 Aligned_cols=146 Identities=18% Similarity=0.172 Sum_probs=137.1
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
...|+-+.......+....+|.+...+..+|......|+|.+|+..++++.. ..|++.++|+.+|.+|.+.|++++
T Consensus 77 ~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~----l~p~d~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 77 YLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR----LAPTDWEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc----cCCCChhhhhHHHHHHHHccChhH
Confidence 3678888888888888889999999998999999999999999999999999 799999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCC
Q 021175 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVP 310 (316)
Q Consensus 241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~ 310 (316)
|...|.+++++.|+++.+..|+|..|.-.||++.|...+.++...-+.+..+..+++.+....|+++.|+
T Consensus 153 Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 153 ARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 9999999999999999999999999999999999999999998888889999999999999999998774
No 44
>PLN02789 farnesyltranstransferase
Probab=99.54 E-value=2.2e-12 Score=114.04 Aligned_cols=170 Identities=9% Similarity=-0.023 Sum_probs=134.2
Q ss_pred ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175 117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRR-ELDLSAKELQEQVRSGDASATEYFELGAVML 195 (316)
Q Consensus 117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 195 (316)
.+..+.|..++..+..+.|.... ++...+.... ..+ ++++++..+.++++.+|++..+|+..+.+..
T Consensus 50 ~e~serAL~lt~~aI~lnP~~yt-------aW~~R~~iL~-----~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYT-------VWHFRRLCLE-----ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHH-------HHHHHHHHHH-----HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 33455666666655555555543 2222232222 334 5788999999999999999999999998888
Q ss_pred HcCCh--HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---C
Q 021175 196 RRKFY--PAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKK---K 270 (316)
Q Consensus 196 ~~g~~--~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g 270 (316)
..|+. ++++++++++++ .+|.+..+|.+.|.++...|++++|++.++++++.+|++..+|+..+.+.... |
T Consensus 118 ~l~~~~~~~el~~~~kal~----~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 118 KLGPDAANKELEFTRKILS----LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HcCchhhHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc
Confidence 88874 678889999998 69999999999999999999999999999999999999999999999888766 3
Q ss_pred CH----HHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175 271 DL----KSALKAFEEVLLFDPNNKVARPRRDALKDR 302 (316)
Q Consensus 271 ~~----~~A~~~~~~al~~~p~~~~a~~~l~~l~~~ 302 (316)
++ ++++.+..++++++|++..+|..++.++..
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 33 468888889999999999999988888876
No 45
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.52 E-value=2.7e-13 Score=122.24 Aligned_cols=112 Identities=17% Similarity=0.250 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 021175 188 FELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYE 267 (316)
Q Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 267 (316)
...|..++..|+|++|+++|+++++ .+|+++.+++++|.++..+|++++|+..++++++++|+++.+++++|.++.
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~----~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAID----LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 3445555666666666666666666 466666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175 268 KKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV 303 (316)
Q Consensus 268 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~ 303 (316)
.+|++++|+..|+++++++|+++.+...++.+..++
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 666666666666666666666666666665554444
No 46
>PLN02789 farnesyltranstransferase
Probab=99.52 E-value=1.2e-12 Score=115.69 Aligned_cols=139 Identities=13% Similarity=0.070 Sum_probs=131.5
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH--
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRK-FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL-- 238 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~-- 238 (316)
..+..++|+..+.++++.+|++..+|...|.++...| +++++++.++++++ .+|++..+|++.+.++...|+.
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~----~npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE----DNPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH----HCCcchHHhHHHHHHHHHcCchhh
Confidence 5678899999999999999999999999999999998 68999999999999 6999999999999999999874
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175 239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP 304 (316)
Q Consensus 239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~ 304 (316)
++++++++++++.+|++..+|...|.++...|++++|++++.++++.+|++..+|...+.+....+
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcc
Confidence 788999999999999999999999999999999999999999999999999999999999887663
No 47
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=1.7e-13 Score=116.56 Aligned_cols=145 Identities=13% Similarity=0.131 Sum_probs=134.1
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
...+++++|.+.|+.+++.+|.+.++...+|.-|+..++.+-|..+|++.++ +.-.+++.+.|+|.|++..+++|-
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq----mG~~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQ----MGAQSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHH----hcCCChHHHhhHHHHHHhhcchhh
Confidence 3788899999999999999999999988899999999999999999999999 788999999999999999999999
Q ss_pred HHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 241 GISQFETAVKLQPG---YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 241 A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
++..|++|+....+ -+++|+|+|.+....||+.-|..+|+-++..+|++.+++.+++.+..+.|+.++|
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence 99999999987543 3789999999999999999999999999999999999999999999999998765
No 48
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.51 E-value=7e-13 Score=127.94 Aligned_cols=142 Identities=9% Similarity=-0.038 Sum_probs=133.2
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Q 021175 165 ELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQ 244 (316)
Q Consensus 165 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 244 (316)
...+++..........|++++++.+||.+....|++++|+.+++.+++ ..|++..++.+++.++.+++++++|...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~----~~Pd~~~a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ----RFPDSSEAFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHhccHHHHHHH
Confidence 344555666666778899999999999999999999999999999999 7999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCC
Q 021175 245 FETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVP 310 (316)
Q Consensus 245 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~ 310 (316)
++++++.+|+++.+++.+|.++.+.|++++|...|++++..+|+++.++..++.+....|+.++|.
T Consensus 143 ~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 143 IELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987663
No 49
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.51 E-value=7.7e-13 Score=130.99 Aligned_cols=142 Identities=11% Similarity=0.047 Sum_probs=130.1
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
..|+.++|++.+.++...+|..+.++..+|.++...|++++|++.++++++ .+|.++.++..+|.++...|++++|
T Consensus 27 ~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALS----LEPQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 688999999999999888898999999999999999999999999999999 6899999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCC
Q 021175 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKG 308 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~ 308 (316)
++.++++++.+|+++. +..+|.++...|++++|+..++++++.+|+++.++..++.++...+..++
T Consensus 103 ~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 103 LVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 9999999999999999 99999999999999999999999999999999999999888887776653
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4.8e-13 Score=120.96 Aligned_cols=174 Identities=17% Similarity=0.214 Sum_probs=129.2
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 021175 120 NVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKF 199 (316)
Q Consensus 120 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 199 (316)
...|+..+..+..+++.-. -+|++.|..|. -.++.++|+..|..|-+.-|........+|.-|...++
T Consensus 328 ~seARry~SKat~lD~~fg-------paWl~fghsfa-----~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFG-------PAWLAFGHSFA-----GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred cHHHHHHHHHHhhcCcccc-------HHHHHHhHHhh-----hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhcc
Confidence 3344444444444443333 34444444444 55666666666666666666665556666666666666
Q ss_pred hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C---cHHHHHHHHHHHHHcCCH
Q 021175 200 YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQP----G---YVTAWNNLGDAYEKKKDL 272 (316)
Q Consensus 200 ~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~---~~~~~~~lg~~~~~~g~~ 272 (316)
++.|.++|.+|+. +.|.++-.+..+|.+.+..+.|.+|..+|+.++..-+ . ....+.|||-++.+++++
T Consensus 396 ~kLAe~Ff~~A~a----i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 396 LKLAEKFFKQALA----IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred HHHHHHHHHHHHh----cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 6666666666666 6888899999999999999999999999999884321 1 245689999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 273 KSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 273 ~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
++|+.+|++++.+.|.++..+..+|-++..+|+.++|
T Consensus 472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~A 508 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKA 508 (611)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHH
Confidence 9999999999999999999999999999999999876
No 51
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.4e-12 Score=115.94 Aligned_cols=138 Identities=24% Similarity=0.368 Sum_probs=125.3
Q ss_pred HhhhHHHHHHHHHHHHH--------------------------cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 021175 162 VRRELDLSAKELQEQVR--------------------------SGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD 215 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 215 (316)
..++++.++.+|++++. .+|+.+..-...|+.++..|+|..|+.+|.++++
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--- 386 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK--- 386 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh---
Confidence 66788888888877765 3444456667789999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 021175 216 GDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR 295 (316)
Q Consensus 216 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 295 (316)
.+|+++..|.|.|.||.+.|++..|++..+++++++|+...+|..-|.++..+.+|++|++.|+++++.+|++.++...
T Consensus 387 -r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 387 -RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred -cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhC
Q 021175 296 RDALKDRV 303 (316)
Q Consensus 296 l~~l~~~~ 303 (316)
+..+...+
T Consensus 466 ~~rc~~a~ 473 (539)
T KOG0548|consen 466 YRRCVEAQ 473 (539)
T ss_pred HHHHHHHh
Confidence 88887764
No 52
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.49 E-value=2.2e-12 Score=127.72 Aligned_cols=151 Identities=12% Similarity=0.058 Sum_probs=128.9
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---------CCcc--HHHH
Q 021175 160 VLVRRELDLSAKELQEQVRSGDAS----ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG---------DDQD--LAQV 224 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------~~p~--~~~~ 224 (316)
++..|++++|++.|+++++.+|.. ......++.++...|++++|+++++++.+..|. ..|+ ...+
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 348899999999999999888765 456778888889999999999999999884221 1123 3567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175 225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP 304 (316)
Q Consensus 225 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~ 304 (316)
+..+|.++...|++++|++.+++++...|++..++..+|.++...|++++|++.++++++++|++...+..++.+....|
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 021175 305 LYKGVP 310 (316)
Q Consensus 305 ~~~~A~ 310 (316)
++++|.
T Consensus 442 ~~~~A~ 447 (765)
T PRK10049 442 EWRQMD 447 (765)
T ss_pred CHHHHH
Confidence 887653
No 53
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.48 E-value=1.2e-12 Score=108.51 Aligned_cols=143 Identities=18% Similarity=0.191 Sum_probs=131.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHH
Q 021175 163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242 (316)
Q Consensus 163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 242 (316)
..+...+...+-+....+|++..+ .+++..+...|+-+++..+..++.. .+|.+......+|....+.|++.+|+
T Consensus 46 ~~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~----~~~~d~~ll~~~gk~~~~~g~~~~A~ 120 (257)
T COG5010 46 MRQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAI----AYPKDRELLAAQGKNQIRNGNFGEAV 120 (257)
T ss_pred HHhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhc----cCcccHHHHHHHHHHHHHhcchHHHH
Confidence 334445777777788899999999 9999999999999999999999777 58899899888999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCC
Q 021175 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVP 310 (316)
Q Consensus 243 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~ 310 (316)
..++++.+++|+++++|..+|.+|.+.|++++|...|.+++++.|+++.+..|++..+...|++++|+
T Consensus 121 ~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 121 SVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred HHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988763
No 54
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.47 E-value=4.1e-12 Score=108.23 Aligned_cols=158 Identities=15% Similarity=0.061 Sum_probs=122.3
Q ss_pred ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHH---HHHHHHHH
Q 021175 117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASAT---EYFELGAV 193 (316)
Q Consensus 117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~ 193 (316)
-++...|...++.+....+..+... .++...|..+. ..|++++|+..++++++.+|+++. +++.+|.+
T Consensus 46 ~~~~~~A~~~~~~~~~~~p~~~~~~----~a~~~la~~~~-----~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~ 116 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRYPFSPYAE----QAQLDLAYAYY-----KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLS 116 (235)
T ss_pred cCCHHHHHHHHHHHHHhCCCchhHH----HHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHH
Confidence 4455555556665544444332111 23333444444 899999999999999999998765 79999999
Q ss_pred HHHc--------CChHHHHHHHHHHHHhcCCCCccHHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHH
Q 021175 194 MLRR--------KFYPAATKYLLQAIEKWDGDDQDLAQV-----------------YNALGVSYVREGKLDKGISQFETA 248 (316)
Q Consensus 194 ~~~~--------g~~~~A~~~~~~al~~~~~~~p~~~~~-----------------~~~lg~~~~~~g~~~~A~~~~~~a 248 (316)
+... |++++|++.++++++. +|++..+ ...+|..|+..|++++|+..++++
T Consensus 117 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 192 (235)
T TIGR03302 117 NYNQIDRVDRDQTAAREAFEAFQELIRR----YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETV 192 (235)
T ss_pred HHHhcccccCCHHHHHHHHHHHHHHHHH----CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9876 8899999999999994 5554322 246789999999999999999999
Q ss_pred HHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175 249 VKLQPGY---VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287 (316)
Q Consensus 249 l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 287 (316)
++..|+. +++++.+|.++..+|++++|..+++......|
T Consensus 193 l~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 193 VENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9997764 68999999999999999999999888766554
No 55
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.47 E-value=3.6e-12 Score=99.05 Aligned_cols=89 Identities=18% Similarity=0.129 Sum_probs=86.2
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD 239 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~ 239 (316)
....|++++|++.|+-....+|.+.+.|++||.++..+|+|++|++.|.+++. ++|+++.++.++|.+++..|+.+
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~----L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ----IKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHcCCHH
Confidence 34899999999999999999999999999999999999999999999999999 79999999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 021175 240 KGISQFETAVKLQ 252 (316)
Q Consensus 240 ~A~~~~~~al~~~ 252 (316)
+|.+.|+.++...
T Consensus 121 ~A~~aF~~Ai~~~ 133 (157)
T PRK15363 121 YAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999876
No 56
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.8e-11 Score=103.98 Aligned_cols=138 Identities=17% Similarity=0.138 Sum_probs=123.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc---CCHH
Q 021175 163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE---GKLD 239 (316)
Q Consensus 163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~---g~~~ 239 (316)
..+.++.+..++..+..+|++++.|..||.+|+..|+++.|...|.+|++ +.|++++.+..+|.+++.+ ....
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r----L~g~n~~~~~g~aeaL~~~a~~~~ta 210 (287)
T COG4235 135 EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALR----LAGDNPEILLGLAEALYYQAGQQMTA 210 (287)
T ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhcCCcccH
Confidence 44567778888999999999999999999999999999999999999999 7999999999999998775 3567
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175 240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP 304 (316)
Q Consensus 240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~ 304 (316)
++.+.++++++.+|++..+.+.||..++..|++.+|...++..++..|.+..-...+........
T Consensus 211 ~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~~ 275 (287)
T COG4235 211 KARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARAL 275 (287)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987766666655444433
No 57
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.44 E-value=1.1e-12 Score=114.95 Aligned_cols=121 Identities=17% Similarity=0.240 Sum_probs=93.6
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
...|+.++|++.++++++.+|+++++...++.++...|+++++.+.++...+ ..|.++..+..+|.++...|++++
T Consensus 157 ~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~----~~~~~~~~~~~la~~~~~lg~~~~ 232 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLK----AAPDDPDLWDALAAAYLQLGRYEE 232 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH----H-HTSCCHCHHHHHHHHHHT-HHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH----HCcCHHHHHHHHHHHhcccccccc
Confidence 3899999999999999999999999999999999999999999999999888 357788889999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
|+.+|+++++.+|+++.....+|.++...|+.++|...++++++.
T Consensus 233 Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 233 ALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999998763
No 58
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.44 E-value=3.6e-12 Score=96.29 Aligned_cols=112 Identities=20% Similarity=0.276 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHH
Q 021175 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY---VTAWN 260 (316)
Q Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 260 (316)
++.++.+|..+...|++++|++.++++++..+ .++..+.+++.+|.++...|++++|++.|++++..+|++ +.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYP-KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 46789999999999999999999999998532 123346789999999999999999999999999998885 67899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 021175 261 NLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRR 296 (316)
Q Consensus 261 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 296 (316)
.+|.++.+.|++++|...++++++..|++..+....
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 999999999999999999999999999988765543
No 59
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.44 E-value=2.7e-12 Score=115.74 Aligned_cols=108 Identities=18% Similarity=0.227 Sum_probs=102.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175 158 RQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK 237 (316)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~ 237 (316)
+..+..|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++ ++|.++.+++++|.++..+|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~----l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE----LDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCCHHHHHHHHHHHHHhCC
Confidence 4455899999999999999999999999999999999999999999999999999 799999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 021175 238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEKK 269 (316)
Q Consensus 238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 269 (316)
+++|+..|+++++++|++..+...++.|...+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887665
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.43 E-value=1.6e-11 Score=113.49 Aligned_cols=191 Identities=13% Similarity=0.134 Sum_probs=144.8
Q ss_pred hhccchHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHc--------CCCCHH
Q 021175 115 ANASENVQMDAVYEIGELF-ELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRS--------GDASAT 185 (316)
Q Consensus 115 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~ 185 (316)
...++.+.|..++..+... ..............+..++.++. ..+++++|+..|++++.+ +|..+.
T Consensus 210 ~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-----~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 210 AVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-----SLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-----HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3455666666666533333 11111122222122223455554 899999999999999974 445577
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCC----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C
Q 021175 186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDG----DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ--------P 253 (316)
Q Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p 253 (316)
++.+||.+|...|++++|..++++|+++..+ ..|.-+..+.+++.++..++++++|+.++++++++. |
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 9999999999999999999999999997653 456677888999999999999999999999999863 2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCChhHHHHHHHHHhhCCCCCCCC
Q 021175 254 GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFD--------PNNKVARPRRDALKDRVPLYKGVP 310 (316)
Q Consensus 254 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~l~~l~~~~~~~~~A~ 310 (316)
.-+..+.++|.+|..+|++++|.+.|++++++. +.......+++..+.+.+.+.+|+
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 347789999999999999999999999999874 333556778888888888877653
No 61
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.42 E-value=1.4e-11 Score=117.68 Aligned_cols=177 Identities=19% Similarity=0.199 Sum_probs=146.4
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 021175 118 SENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRR 197 (316)
Q Consensus 118 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 197 (316)
+..+.|...|+.+..++|... .++.+++.+-. +......+..+...+.++...+|++|.+...+++-++-.
T Consensus 213 ~~~~~a~~a~~ralqLdp~~v-------~alv~L~~~~l--~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK 283 (1018)
T KOG2002|consen 213 GMSEKALLAFERALQLDPTCV-------SALVALGEVDL--NFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFK 283 (1018)
T ss_pred cchhhHHHHHHHHHhcChhhH-------HHHHHHHHHHH--HccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhc
Confidence 344455556665555555222 23333333322 122556788999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHH
Q 021175 198 KFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY-VTAWNNLGDAYEKKKDLKSAL 276 (316)
Q Consensus 198 g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~ 276 (316)
|+|..+......++.... ..+-.++.++++|.+|..+|+|++|..+|.++++.+|++ .-.++.+|++|...|+++.|.
T Consensus 284 ~dy~~v~~la~~ai~~t~-~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~ 362 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTE-NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESK 362 (1018)
T ss_pred ccHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHH
Confidence 999999999999998532 245667889999999999999999999999999999988 888999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175 277 KAFEEVLLFDPNNKVARPRRDALKDRVP 304 (316)
Q Consensus 277 ~~~~~al~~~p~~~~a~~~l~~l~~~~~ 304 (316)
.+|+++++..|++.+....+|.++...+
T Consensus 363 ~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 363 FCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 9999999999999999999999998775
No 62
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.41 E-value=1.2e-11 Score=95.99 Aligned_cols=94 Identities=15% Similarity=0.069 Sum_probs=90.2
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
..|++++|+..+++++..+|+++.++.++|.++...|++++|+..++++++ .+|.++..++++|.++...|++++|
T Consensus 29 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~~la~~~~~~g~~~~A 104 (135)
T TIGR02552 29 QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA----LDPDDPRPYFHAAECLLALGEPESA 104 (135)
T ss_pred HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCChHHHHHHHHHHHHcCCHHHH
Confidence 889999999999999999999999999999999999999999999999999 7999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHH
Q 021175 242 ISQFETAVKLQPGYVTAW 259 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~ 259 (316)
++.++++++.+|++....
T Consensus 105 ~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 105 LKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHhccccchHH
Confidence 999999999999886643
No 63
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.41 E-value=2.6e-11 Score=109.69 Aligned_cols=106 Identities=17% Similarity=0.119 Sum_probs=61.9
Q ss_pred HcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-
Q 021175 178 RSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV- 256 (316)
Q Consensus 178 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~- 256 (316)
..+|........+|.++...|++++|++.++++++ ..|+++.++..+|.++...|++++|++.++++++..|.++
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~ 183 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE----LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSM 183 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcc
Confidence 34444555555566666666666666666666666 4555566666666666666666666666666666554321
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175 257 ---TAWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287 (316)
Q Consensus 257 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 287 (316)
..+..+|.++...|++++|...|++++...|
T Consensus 184 ~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 184 LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 2344566666666666666666666655444
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=1.5e-12 Score=110.81 Aligned_cols=140 Identities=14% Similarity=0.134 Sum_probs=129.3
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
..++.+.|+.+|++.++..-.+++.+.|+|.+++..+++|-++..|++|+....+ +...+++|+|+|.+....||+.-|
T Consensus 336 Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-~~~aaDvWYNlg~vaV~iGD~nlA 414 (478)
T KOG1129|consen 336 YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-PGQAADVWYNLGFVAVTIGDFNLA 414 (478)
T ss_pred cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-cchhhhhhhccceeEEeccchHHH
Confidence 5789999999999999999999999999999999999999999999999986442 345688999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR 302 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~ 302 (316)
..+|+-++..||++.++++|||..-.+.|+.++|...++.+....|+-.+...+++.+...
T Consensus 415 ~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~~ 475 (478)
T KOG1129|consen 415 KRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMSVH 475 (478)
T ss_pred HHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEeee
Confidence 9999999999999999999999999999999999999999999999998888887655443
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.40 E-value=1.4e-11 Score=113.89 Aligned_cols=190 Identities=19% Similarity=0.231 Sum_probs=151.5
Q ss_pred hhccchHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcC--------CCCHH
Q 021175 115 ANASENVQMDAVYEIGELFELG-IQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSG--------DASAT 185 (316)
Q Consensus 115 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~ 185 (316)
...+...+|..+|+.+..+... ....+......+..++..|. ..|++++|..++++++++. |+-+.
T Consensus 252 ~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-----~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 252 RSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-----KQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-----ccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 3456677777788655444433 22334444566677777775 8999999999999998753 33466
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCC----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C
Q 021175 186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDG----DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ--------P 253 (316)
Q Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p 253 (316)
.+.+++.++..++++++|+.++++++++... .++..+..+.++|.+|..+|++++|.+.+++|+++. +
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 7889999999999999999999999997542 455678899999999999999999999999999875 3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCChhHHHHHHHHHhhCCCCCCC
Q 021175 254 GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF-------DPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 254 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
.......++|..|.+.+++++|...|.++..+ .|+....+.+|+.+|..+|++++|
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a 469 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAA 469 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHH
Confidence 33678889999999999999999999888876 345567789999999999999876
No 66
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.40 E-value=1.7e-11 Score=98.96 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 164 RELDLSAKELQEQVRSGDAS--ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 164 ~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
.++..+...+.+.++.++.. ..+++++|.++...|++++|+..|+++++..+. .+..+.++.++|.++...|++++|
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHH
Confidence 34555556665555555544 678899999999999999999999999984221 223567999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhcCCCCh
Q 021175 242 ISQFETAVKLQPGYVTAWNNLGDAYE-------KKKDLK-------SALKAFEEVLLFDPNNK 290 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~~~lg~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 290 (316)
++.++++++++|.....+.++|.++. .+|+++ +|..+|++++..+|++.
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999999988 777766 66677777888888654
No 67
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.40 E-value=1.4e-11 Score=99.89 Aligned_cols=108 Identities=22% Similarity=0.385 Sum_probs=95.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 021175 181 DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWN 260 (316)
Q Consensus 181 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 260 (316)
+..+.+++++|..+...|++++|+.+|+++++..+. .+....++.++|.++...|++++|++.++++++.+|++...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 356778999999999999999999999999984221 2234678999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCC
Q 021175 261 NLGDAYEKKKD--------------LKSALKAFEEVLLFDPNN 289 (316)
Q Consensus 261 ~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~ 289 (316)
.+|.++...|+ +++|.++++++++.+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999887 678999999999999986
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=1.6e-10 Score=98.42 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=120.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHHHc
Q 021175 157 IRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG-DDQDLAQVYNALGVSYVRE 235 (316)
Q Consensus 157 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~p~~~~~~~~lg~~~~~~ 235 (316)
++.++..|-++.|++.|....+...-...+...+-.+|....+|++|++..++..+.-++ ..-..+..|..++..+...
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 444558888888888888877766666778888888888888888888888888874322 2224567788888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHhhCCCCCC
Q 021175 236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN-KVARPRRDALKDRVPLYKG 308 (316)
Q Consensus 236 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~l~~l~~~~~~~~~ 308 (316)
.+.+.|...+++|++.+|++..+-..+|.++...|++++|++.++.+++.||+. +++...|..+|..+|+.++
T Consensus 194 ~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 194 SDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred hhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888888888888888888888888888888888888888888888888888875 5667777788888877643
No 69
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.38 E-value=2.4e-12 Score=87.76 Aligned_cols=67 Identities=37% Similarity=0.642 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 021175 221 LAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK-DLKSALKAFEEVLLFDP 287 (316)
Q Consensus 221 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 287 (316)
++..|.++|.+++..|++++|+..|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35667777777777777777777777777777777777777777777777 57777777777777776
No 70
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.37 E-value=1.4e-11 Score=87.97 Aligned_cols=99 Identities=34% Similarity=0.561 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 021175 186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDA 265 (316)
Q Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 265 (316)
+++++|..+...|++++|++.++++++ ..|.+..++..+|.++...|++++|++.++++++..|.+...+..+|.+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 77 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE----LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 578899999999999999999999999 6888888999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q 021175 266 YEKKKDLKSALKAFEEVLLFDPN 288 (316)
Q Consensus 266 ~~~~g~~~~A~~~~~~al~~~p~ 288 (316)
+...|++++|...++++++.+|+
T Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 78 YYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHhHHHHHHHHHHHHccCCC
Confidence 99999999999999999988874
No 71
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.35 E-value=8.6e-11 Score=105.23 Aligned_cols=140 Identities=18% Similarity=0.133 Sum_probs=102.9
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD 239 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~ 239 (316)
.+..|++++|.+.++..++..|+++..+...+.++...++.++|.+.+++++. .+|+.+....++|.++.+.|+++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~----l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA----LDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCCccHHHHHHHHHHHhcCChH
Confidence 34667777777777777777777777777777777777777777777777777 57777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175 240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV 303 (316)
Q Consensus 240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~ 303 (316)
+|+..+++.+..+|+++..|..|+..|..+|+..+|...+.+...+.-+...+...+....++.
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777777777766666555555554444443
No 72
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.35 E-value=8.4e-11 Score=111.71 Aligned_cols=132 Identities=21% Similarity=0.334 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHH
Q 021175 147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYN 226 (316)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~ 226 (316)
.+++.++..+ ..|++++|+..+.++++.+|..+.+|+.||.+|..+|+.+++....-.|.. ++|.+.+.|.
T Consensus 141 ~ll~eAN~lf-----arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH----L~p~d~e~W~ 211 (895)
T KOG2076|consen 141 QLLGEANNLF-----ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH----LNPKDYELWK 211 (895)
T ss_pred HHHHHHHHHH-----HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh----cCCCChHHHH
Confidence 3444444444 779999999999999999999999999999999999999999999999999 7999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175 227 ALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287 (316)
Q Consensus 227 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 287 (316)
.++....++|.+++|.-+|.+|++.+|.+.+..+..+.+|.++|+...|+..|.+.+++.|
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999
No 73
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.34 E-value=1.7e-10 Score=109.61 Aligned_cols=195 Identities=11% Similarity=0.114 Sum_probs=159.2
Q ss_pred hhhhHHHHHHHH-hhccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCC
Q 021175 103 FGSSSWLISARV-ANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGD 181 (316)
Q Consensus 103 ~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 181 (316)
....+|.+.+.+ ..-|+.+++...+-.+.++.+...-.+... +-. ..+.|++++|.-+|.++++.+|
T Consensus 171 ~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l-------adl-----s~~~~~i~qA~~cy~rAI~~~p 238 (895)
T KOG2076|consen 171 RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL-------ADL-----SEQLGNINQARYCYSRAIQANP 238 (895)
T ss_pred cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH-------HHH-----HHhcccHHHHHHHHHHHHhcCC
Confidence 344567777776 566788888888888888888777333222 111 2267889999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC----------------------------------------------
Q 021175 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD---------------------------------------------- 215 (316)
Q Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---------------------------------------------- 215 (316)
.+....+..+.+|.+.|+...|.+.|.+.++..|
T Consensus 239 ~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed 318 (895)
T KOG2076|consen 239 SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLED 318 (895)
T ss_pred cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccH
Confidence 9988889999999999999888888888776221
Q ss_pred --------------------------------------------------------------------------------
Q 021175 216 -------------------------------------------------------------------------------- 215 (316)
Q Consensus 216 -------------------------------------------------------------------------------- 215 (316)
T Consensus 319 ~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ 398 (895)
T KOG2076|consen 319 LNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEA 398 (895)
T ss_pred HHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHH
Confidence
Q ss_pred -------C--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 216 -------G--DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPG-YVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 216 -------~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
. ...++...++.++.++...|++++|+.++...+...+. +..+|+.+|.||..+|.+++|+++|++++..
T Consensus 399 ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 399 LLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 0 12245678889999999999999999999999987764 4789999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHhhCCCCCCC
Q 021175 286 DPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 286 ~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
+|++.+++..|+.+++.+|+.++|
T Consensus 479 ~p~~~D~Ri~Lasl~~~~g~~Eka 502 (895)
T KOG2076|consen 479 APDNLDARITLASLYQQLGNHEKA 502 (895)
T ss_pred CCCchhhhhhHHHHHHhcCCHHHH
Confidence 999999999999999999999866
No 74
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=4.2e-10 Score=92.91 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=70.0
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
..|++++|+++|+..++.+|.+...+-..-.+...+|+--+|++.+.+-++ ..+.+.++|..++.+|...|+|++|
T Consensus 98 a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~----~F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD----KFMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH----HhcCcHHHHHHHHHHHHhHhHHHHH
Confidence 345555555555555555555555555444444555555555555555555 3455555555555555555555555
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKK---DLKSALKAFEEVLLFDPNNKVARPRRDAL 299 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~l~~l 299 (316)
.-++++.+=++|.++-.+..+|.+++-+| +.+-|.++|.++++++|.+..+++.+-..
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 55555555555555555555555555444 23345555555555555544444444333
No 75
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=2e-10 Score=94.76 Aligned_cols=141 Identities=19% Similarity=0.140 Sum_probs=132.5
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
+..++.+.|..++++.....|+...+-...|..+...|++++|+++|+..++ .+|.+..++-..-.+...+|+.-+
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~----ddpt~~v~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLE----DDPTDTVIRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhc----cCcchhHHHHHHHHHHHHcCCcHH
Confidence 4788899999999999998999999999999999999999999999999999 799999999988888999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPL 305 (316)
Q Consensus 241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~ 305 (316)
|++.+.+-++..++|.++|..++.+|...|++++|.-||++.+-++|.++-...+++.++.-+|.
T Consensus 139 aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 139 AIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999888766554
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=5e-11 Score=111.54 Aligned_cols=126 Identities=24% Similarity=0.293 Sum_probs=120.3
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
..++.+++..++.++-+.+|..+..|+..|..+..+|++.+|.+.|..|+. ++|++..+...+|.++.+.|+..-|
T Consensus 662 ~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~----ldP~hv~s~~Ala~~lle~G~~~la 737 (799)
T KOG4162|consen 662 LSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA----LDPDHVPSMTALAELLLELGSPRLA 737 (799)
T ss_pred hcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh----cCCCCcHHHHHHHHHHHHhCCcchH
Confidence 677888999999999999999999999999999999999999999999999 7999999999999999999999888
Q ss_pred HH--HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 021175 242 IS--QFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV 291 (316)
Q Consensus 242 ~~--~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 291 (316)
.+ .+..+++++|.++++|+++|.++.++|+.++|.++|+.++++++.+|-
T Consensus 738 ~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 738 EKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 88 999999999999999999999999999999999999999999988764
No 77
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.32 E-value=1.6e-11 Score=117.32 Aligned_cols=154 Identities=16% Similarity=0.241 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHH-------HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc
Q 021175 147 GLLGVGTFFVIRQ-------VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ 219 (316)
Q Consensus 147 ~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p 219 (316)
+++++|+++...- ....+.+++|++.|.++++.+|.+..+-+.+|.++...|++.+|.+.|.+..+ .-.
T Consensus 602 sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE----a~~ 677 (1018)
T KOG2002|consen 602 SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVRE----ATS 677 (1018)
T ss_pred HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHH----HHh
Confidence 5566677554321 23566789999999999999999999999999999999999999999999998 344
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 021175 220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQ--PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRD 297 (316)
Q Consensus 220 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~ 297 (316)
+++.+|.|+|.||..+|+|-.|++.|+.+++.. .++..+...||.+++..|++.+|.++..+++...|.++...++++
T Consensus 678 ~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 678 DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 678899999999999999999999999999864 356899999999999999999999999999999999999999999
Q ss_pred HHHhhCC
Q 021175 298 ALKDRVP 304 (316)
Q Consensus 298 ~l~~~~~ 304 (316)
.+..+++
T Consensus 758 ~v~kkla 764 (1018)
T KOG2002|consen 758 LVLKKLA 764 (1018)
T ss_pred HHHHHHH
Confidence 8887755
No 78
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.31 E-value=1.9e-10 Score=113.20 Aligned_cols=175 Identities=10% Similarity=-0.031 Sum_probs=142.2
Q ss_pred hhccchHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 021175 115 ANASENVQMDAVYEIGELFELGIQ-LSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAV 193 (316)
Q Consensus 115 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 193 (316)
...|+...|.+.++.+....|..+ ... . +..++. ..|+.++|+.++++++...|........+|.+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-d-------ll~l~~-----~~G~~~~A~~~~eka~~p~n~~~~~llalA~l 111 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-D-------WLQIAG-----WAGRDQEVIDVYERYQSSMNISSRGLASAARA 111 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-H-------HHHHHH-----HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 567777888888886666666653 111 1 111122 66999999999999995556666677777889
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 021175 194 MLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLK 273 (316)
Q Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 273 (316)
+...|++++|++.|+++++ .+|+++.++..++.++...++.++|++.++++...+|.+... ..++.++...++..
T Consensus 112 y~~~gdyd~Aiely~kaL~----~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~ 186 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLK----KDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY 186 (822)
T ss_pred HHHcCCHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH
Confidence 9999999999999999999 699999999999999999999999999999999999986554 55666666678887
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCC
Q 021175 274 SALKAFEEVLLFDPNNKVARPRRDALKDRVPLYK 307 (316)
Q Consensus 274 ~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~ 307 (316)
+|++.++++++.+|++.+....+..+..+.|-..
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Confidence 8999999999999999999988888877777654
No 79
>PRK15331 chaperone protein SicA; Provisional
Probab=99.30 E-value=4.7e-11 Score=93.23 Aligned_cols=123 Identities=10% Similarity=-0.008 Sum_probs=108.5
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 021175 177 VRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV 256 (316)
Q Consensus 177 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 256 (316)
..+.++.-+..+..|.-++..|++++|...|+-... .+|.++..+..||.++..+|+|++|+..|..|..++++++
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~----~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCI----YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY 105 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 345556677889999999999999999999999998 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175 257 TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP 304 (316)
Q Consensus 257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~ 304 (316)
...+..|.||..+|+.++|+.+|+.+++ +|.+......-......+.
T Consensus 106 ~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~ 152 (165)
T PRK15331 106 RPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALK 152 (165)
T ss_pred CccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 6877776665554444443
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=4.9e-10 Score=105.03 Aligned_cols=173 Identities=20% Similarity=0.187 Sum_probs=144.0
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCChHHH
Q 021175 125 AVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGD-ASATEYFELGAVMLRRKFYPAA 203 (316)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A 203 (316)
+.++.+..+++..+. +.+.++..+. .+++.+.|....+++++.++ +++.+|..++.++...+++.+|
T Consensus 465 qale~av~~d~~dp~-------~if~lalq~A-----~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 465 QALEEAVQFDPTDPL-------VIFYLALQYA-----EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHhcCCCCch-------HHHHHHHHHH-----HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 355666666666652 3333333343 78899999999999999954 6789999999999999999999
Q ss_pred HHHHHHHHHhcC--------------------------------------------------------------------
Q 021175 204 TKYLLQAIEKWD-------------------------------------------------------------------- 215 (316)
Q Consensus 204 ~~~~~~al~~~~-------------------------------------------------------------------- 215 (316)
+...+.+++-++
T Consensus 533 l~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~ 612 (799)
T KOG4162|consen 533 LDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIST 612 (799)
T ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchh
Confidence 888877765110
Q ss_pred -----------------------------------------------------------------CCCccHHHHHHHHHH
Q 021175 216 -----------------------------------------------------------------GDDQDLAQVYNALGV 230 (316)
Q Consensus 216 -----------------------------------------------------------------~~~p~~~~~~~~lg~ 230 (316)
++.|..+..|+..|.
T Consensus 613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~ 692 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGL 692 (799)
T ss_pred hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhH
Confidence 145556677888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCChhHHHHHHHHHhhCCCCCC
Q 021175 231 SYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALK--AFEEVLLFDPNNKVARPRRDALKDRVPLYKG 308 (316)
Q Consensus 231 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~ 308 (316)
++..+|+..+|.+.|..|+.++|+++.+...+|.++.+.|+..-|.. .+..+++++|.++++|+.+|.+.+++|+.+.
T Consensus 693 ~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 99999999999999999999999999999999999999999888888 9999999999999999999999999999875
Q ss_pred C
Q 021175 309 V 309 (316)
Q Consensus 309 A 309 (316)
|
T Consensus 773 A 773 (799)
T KOG4162|consen 773 A 773 (799)
T ss_pred H
Confidence 4
No 81
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.30 E-value=1.4e-11 Score=83.85 Aligned_cols=67 Identities=34% Similarity=0.671 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 021175 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG-KLDKGISQFETAVKLQP 253 (316)
Q Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 253 (316)
++..|..+|..+...|++++|+.+|+++++ .+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~----~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE----LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH----HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 578899999999999999999999999999 69999999999999999999 79999999999999998
No 82
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=9.7e-11 Score=103.82 Aligned_cols=144 Identities=18% Similarity=0.176 Sum_probs=81.7
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
.+|++++|.+.|++++..+....++++++|..+..+|+.++|+++|-+.-. +--+++++++.++.+|..+.+..+|
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~----il~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA----ILLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHhhCHHHH
Confidence 455555555555555555555555555555555555555555555555444 2334444555555555555555555
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc----------------------------------CCHHHHHHHHHHHHhcCC
Q 021175 242 ISQFETAVKLQPGYVTAWNNLGDAYEKK----------------------------------KDLKSALKAFEEVLLFDP 287 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~----------------------------------g~~~~A~~~~~~al~~~p 287 (316)
++++.++..+-|+++.++..||..|-+. .-.++|+.+|+++--+.|
T Consensus 578 ie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 578 IELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 5555555555555444444444444444 445677777777777777
Q ss_pred CChhHHHHHHHHHhhCCCCCCC
Q 021175 288 NNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 288 ~~~~a~~~l~~l~~~~~~~~~A 309 (316)
+.......++.+.++.|+|++|
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHH
Confidence 7777777777777777777655
No 83
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.30 E-value=2.6e-10 Score=104.79 Aligned_cols=183 Identities=13% Similarity=0.093 Sum_probs=130.9
Q ss_pred hhccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 021175 115 ANASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVM 194 (316)
Q Consensus 115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 194 (316)
...++.+.+...+..+....+........ ...+.....|++++|.+.+++..+.+|+++.++..++.+|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l-----------~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~ 197 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEI-----------TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAY 197 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHH-----------HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34555666666666554444443321110 1122344899999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhc--------------------------------------CCCCccHHHHHHHHHHHHHHcC
Q 021175 195 LRRKFYPAATKYLLQAIEKW--------------------------------------DGDDQDLAQVYNALGVSYVREG 236 (316)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~--------------------------------------~~~~p~~~~~~~~lg~~~~~~g 236 (316)
...|++++|.+.+.+..+.. +...|+++.+...++..+...|
T Consensus 198 ~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g 277 (398)
T PRK10747 198 IRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD 277 (398)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC
Confidence 99999999997776655321 0123345666667777777777
Q ss_pred CHHHHHHHHHHHHH-------------------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 237 KLDKGISQFETAVK-------------------------------LQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 237 ~~~~A~~~~~~al~-------------------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
+.++|.+.++++++ .+|+++..+..+|.++...|++++|.++|+++++.
T Consensus 278 ~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 278 DHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77776666666655 34666778888899999999999999999999999
Q ss_pred CCCChhHHHHHHHHHhhCCCCCCC
Q 021175 286 DPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 286 ~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
+|++.. +..++.++.+.|+.++|
T Consensus 358 ~P~~~~-~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 358 RPDAYD-YAWLADALDRLHKPEEA 380 (398)
T ss_pred CCCHHH-HHHHHHHHHHcCCHHHH
Confidence 888654 45688888888887654
No 84
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=7e-10 Score=94.59 Aligned_cols=127 Identities=18% Similarity=0.254 Sum_probs=117.3
Q ss_pred HhhhHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175 162 VRRELDLSAKELQEQVRSGDAS-----ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG 236 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g 236 (316)
...+|++|++..++..+..+.. +..+..++..+....+.+.|...+.+|++ .+|+...+-..+|.++...|
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq----a~~~cvRAsi~lG~v~~~~g 228 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ----ADKKCVRASIILGRVELAKG 228 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh----hCccceehhhhhhHHHHhcc
Confidence 7889999999999999888754 67899999999999999999999999999 79999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175 237 KLDKGISQFETAVKLQPGY-VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292 (316)
Q Consensus 237 ~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 292 (316)
+|++|++.++.+++.||+. +.+.-.|..||.++|+.++....+.++.+..++....
T Consensus 229 ~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 229 DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 9999999999999999987 6788899999999999999999999999988875433
No 85
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.29 E-value=1.1e-10 Score=114.77 Aligned_cols=140 Identities=11% Similarity=0.003 Sum_probs=123.0
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
++|++++|+..|+++++.+|+.+.+...+..++...|+.++|+.++++++. ..|........+|.++..+|++++|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999999999999965544888999999999999999999996 4677777777779999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY 306 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~ 306 (316)
++.|+++++.+|+++.++..++..+...|+.++|++.++++...+|++... ..++.++...++.
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~ 185 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchH
Confidence 999999999999999999999999999999999999999999999986665 4455555444443
No 86
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.29 E-value=1.8e-10 Score=108.22 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=107.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 021175 163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKF--------YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR 234 (316)
Q Consensus 163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~ 234 (316)
.++.++|+..|+++++.+|+++.++..++.++..... ..++.+..++++.. + .+|.++.+|.-+|..+..
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al-~-~~~~~~~~~~ala~~~~~ 432 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL-P-ELNVLPRIYEILAVQALV 432 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc-c-cCcCChHHHHHHHHHHHh
Confidence 4558899999999999999999999999988766532 33445555554442 0 266678889999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175 235 EGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292 (316)
Q Consensus 235 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 292 (316)
.|++++|...+++|++++| +..+|..+|.++...|++++|.+.|++|++++|.++..
T Consensus 433 ~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 433 KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 9999999999999999999 58899999999999999999999999999999998753
No 87
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.28 E-value=1.1e-10 Score=104.56 Aligned_cols=125 Identities=16% Similarity=0.127 Sum_probs=120.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 021175 181 DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWN 260 (316)
Q Consensus 181 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 260 (316)
|....+++..+..++..|++++|++.++..++ ..|+++..+...+.++...|+.++|.+.+++++.++|+......
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~----~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~ 378 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIA----AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQL 378 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHH
Confidence 56788999999999999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 261 NLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 261 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
++|.+|.+.|++++|+..++..+.-+|+++..|..|++.+..+|+-.++
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence 9999999999999999999999999999999999999999999987654
No 88
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.28 E-value=4e-10 Score=88.62 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=102.3
Q ss_pred HhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH
Q 021175 162 VRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL 238 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~ 238 (316)
..++...+...+++..+.+|+. ..+.+.+|.++...|++++|...|++++...+ ..+....+.+++|.++...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP-DPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHcCCH
Confidence 5788888888899999999988 67888999999999999999999999999421 1122356888999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021175 239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283 (316)
Q Consensus 239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 283 (316)
++|+..++. +.-.+-.+.++..+|.+|...|++++|+..|++++
T Consensus 102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999976 34444557788899999999999999999999875
No 89
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.27 E-value=7.2e-10 Score=94.56 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=125.8
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASATE---YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG 236 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g 236 (316)
.+..|++++|++.|++.+...|..+.+ .+.+|.++++.+++++|+..+++.++..|. +|+.+.+++.+|.++...+
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~-~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC-CCchHHHHHHHHHhhhhcc
Confidence 347899999999999999999987654 589999999999999999999999998773 7888999999999875554
Q ss_pred ---------------C---HHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175 237 ---------------K---LDKGISQFETAVKLQPGYV-----------------TAWNNLGDAYEKKKDLKSALKAFEE 281 (316)
Q Consensus 237 ---------------~---~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~ 281 (316)
| ..+|++.|++.++..|+.. .--+..|..|.+.|++..|+.-++.
T Consensus 121 ~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~ 200 (243)
T PRK10866 121 DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQ 200 (243)
T ss_pred hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 1 3578899999999999872 2234678889999999999999999
Q ss_pred HHhcCCCC---hhHHHHHHHHHhhCCCCCCC
Q 021175 282 VLLFDPNN---KVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 282 al~~~p~~---~~a~~~l~~l~~~~~~~~~A 309 (316)
+++--|+. +++...+...+..+|..++|
T Consensus 201 v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a 231 (243)
T PRK10866 201 MLRDYPDTQATRDALPLMENAYRQLQLNAQA 231 (243)
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHcCChHHH
Confidence 99998875 56677778888888887655
No 90
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.27 E-value=2.1e-11 Score=82.02 Aligned_cols=64 Identities=33% Similarity=0.539 Sum_probs=42.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 021175 227 ALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK 290 (316)
Q Consensus 227 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 290 (316)
.+|..++..|++++|++.|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566666667777777777777776677777777777777777777777777777766666653
No 91
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.3e-11 Score=105.91 Aligned_cols=119 Identities=23% Similarity=0.284 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCC---CCc--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 021175 188 FELGAVMLRRKFYPAATKYLLQAIEKWDG---DDQ--------DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV 256 (316)
Q Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 256 (316)
-.-|+.+++.|+|..|..-|++++...+. .++ .-..++.|++.|+.++++|.+|++...+++..+|++.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 44566777777777777777777765331 011 1235678888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175 257 TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY 306 (316)
Q Consensus 257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~ 306 (316)
.++|..|.++..+|+++.|+..|+++++++|+|..+...+..+.++..++
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888877776555443
No 92
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=6.2e-11 Score=103.89 Aligned_cols=137 Identities=16% Similarity=0.221 Sum_probs=117.6
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCH------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASA------------TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALG 229 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg 229 (316)
...+.+.++.+|++++..+|+.. ..+..-|+-.++.|+|.+|.++|..++.+-|.....++..|.|++
T Consensus 215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra 294 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA 294 (486)
T ss_pred cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence 67889999999999999999763 467788888999999999999999999943322224577899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175 230 VSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL 299 (316)
Q Consensus 230 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l 299 (316)
.+..+.|+..+|+...++++.++|....++...|.|+..++++++|++.|+++.+...+ .+.+..+...
T Consensus 295 ~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A 363 (486)
T KOG0550|consen 295 LVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREA 363 (486)
T ss_pred hhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998776 4444444333
No 93
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=1.4e-10 Score=102.88 Aligned_cols=143 Identities=13% Similarity=0.152 Sum_probs=134.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHH
Q 021175 163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242 (316)
Q Consensus 163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 242 (316)
-.++.+|.++...++.++.-++.+..+.|++.+..|++++|.+.|++++. .+....++++|+|..+..+|+.++|+
T Consensus 469 gk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~----ndasc~ealfniglt~e~~~~ldeal 544 (840)
T KOG2003|consen 469 GKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN----NDASCTEALFNIGLTAEALGNLDEAL 544 (840)
T ss_pred ccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc----CchHHHHHHHHhcccHHHhcCHHHHH
Confidence 34778899999999999999999999999999999999999999999999 68888999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 243 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
++|-+.-.+--+++++++.++.+|..+.+..+|++++.++..+-|+++.....++.++.+-|+-..|
T Consensus 545 d~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 545 DCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhh
Confidence 9999988888899999999999999999999999999999999999999999999999998886554
No 94
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.26 E-value=1e-09 Score=91.29 Aligned_cols=150 Identities=18% Similarity=0.181 Sum_probs=120.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 021175 157 IRQVLVRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYV 233 (316)
Q Consensus 157 ~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~ 233 (316)
+...+..|++++|++.|++.....|.. +++.+.+|.+++..|++++|+..+++.++..|. +|..+.+++.+|.+++
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~-~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN-SPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT--TTHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CcchhhHHHHHHHHHH
Confidence 344558999999999999999988864 689999999999999999999999999998774 7778899999999987
Q ss_pred HcC-----------CHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 234 REG-----------KLDKGISQFETAVKLQPGYV-----------------TAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 234 ~~g-----------~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
.+. ...+|+..|++.++..|++. .--+..|..|.+.|.+..|+..++.+++.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 653 34589999999999999972 23356788999999999999999999999
Q ss_pred CCCCh---hHHHHHHHHHhhCCCCC
Q 021175 286 DPNNK---VARPRRDALKDRVPLYK 307 (316)
Q Consensus 286 ~p~~~---~a~~~l~~l~~~~~~~~ 307 (316)
-|+.+ ++...+...+.++|..+
T Consensus 171 yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 171 YPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp STTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred CCCCchHHHHHHHHHHHHHHhCChH
Confidence 99975 45667777788888654
No 95
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.26 E-value=3.9e-10 Score=96.97 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=99.7
Q ss_pred HHHHHHHHHHH-HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 021175 184 ATEYFELGAVM-LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY---VTAW 259 (316)
Q Consensus 184 ~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 259 (316)
....+..+..+ ...|+|++|+..|++.++.+|. .+..+.+++.+|.+|+..|++++|+..|+++++.+|++ ++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 46778888776 6679999999999999995442 33447899999999999999999999999999998875 7899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175 260 NNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL 299 (316)
Q Consensus 260 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l 299 (316)
+.+|.++..+|++++|...|+++++..|++..+......+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 9999999999999999999999999999988776655444
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.25 E-value=4.8e-10 Score=96.35 Aligned_cols=141 Identities=16% Similarity=0.186 Sum_probs=71.5
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
..|++..|+..|..+++.+|++-.+++..|.+|..+|+-.-|+.-+.+.++ +.|+...+....|.+++++|++++|
T Consensus 50 a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle----lKpDF~~ARiQRg~vllK~Gele~A 125 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE----LKPDFMAARIQRGVVLLKQGELEQA 125 (504)
T ss_pred HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh----cCccHHHHHHHhchhhhhcccHHHH
Confidence 344444444444444444444444444444444444444444444444444 3444444444444444444444444
Q ss_pred HHHHHHHHHhCC-------------------------------------------------CcHHHHHHHHHHHHHcCCH
Q 021175 242 ISQFETAVKLQP-------------------------------------------------GYVTAWNNLGDAYEKKKDL 272 (316)
Q Consensus 242 ~~~~~~al~~~p-------------------------------------------------~~~~~~~~lg~~~~~~g~~ 272 (316)
+..|++.++.+| =++..+...+.||...|+.
T Consensus 126 ~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~ 205 (504)
T KOG0624|consen 126 EADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEP 205 (504)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcH
Confidence 444444444444 3333445555566666666
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175 273 KSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY 306 (316)
Q Consensus 273 ~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~ 306 (316)
..|+..++.+-++..++.+.++.+..++..+|+.
T Consensus 206 k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 206 KKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHhhhhH
Confidence 6666666666666666666655555555555544
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.5e-10 Score=103.21 Aligned_cols=148 Identities=21% Similarity=0.264 Sum_probs=124.9
Q ss_pred HhhhHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC-------------------
Q 021175 162 VRRELDLSAKELQEQVRSGDA-------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWD------------------- 215 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------------- 215 (316)
..|.+.+.+....++++.+-. ...+...+|..+...++++.|+.+|++++....
T Consensus 269 e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e 348 (539)
T KOG0548|consen 269 ERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAE 348 (539)
T ss_pred hccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 677777777777766665443 244555677888889999999999999987432
Q ss_pred ---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175 216 ---GDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292 (316)
Q Consensus 216 ---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 292 (316)
-++|..+.--..-|..++..|+|.+|+..|.+|+..+|+++..|.|.|.||.++|.+..|+...+++++++|+...+
T Consensus 349 ~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 349 RKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred HHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence 04566666666779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCC
Q 021175 293 RPRRDALKDRVPLYKGV 309 (316)
Q Consensus 293 ~~~l~~l~~~~~~~~~A 309 (316)
+.+-+.++..+.+|.+|
T Consensus 429 y~RKg~al~~mk~ydkA 445 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKA 445 (539)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999888888655
No 98
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.24 E-value=8.2e-10 Score=101.90 Aligned_cols=148 Identities=10% Similarity=-0.042 Sum_probs=99.8
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------------------------
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD------------------------ 215 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------------------ 215 (316)
.+..|++++|.+.+++..+..|+++.++..++.++...|++++|.+.+++..+...
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34789999999999999999999999999999999999999999888887775310
Q ss_pred ----------CCCc----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH--HHHHHHHHHcCCHHHHHHHH
Q 021175 216 ----------GDDQ----DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAW--NNLGDAYEKKKDLKSALKAF 279 (316)
Q Consensus 216 ----------~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~lg~~~~~~g~~~~A~~~~ 279 (316)
...| +++..+..+|..+...|++++|++.++++++..|++.... ..........++.+++.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 0123 4677788888888999999999999888888776664311 11111122234444444444
Q ss_pred HHHHhcCCCCh--hHHHHHHHHHhhCCCCC
Q 021175 280 EEVLLFDPNNK--VARPRRDALKDRVPLYK 307 (316)
Q Consensus 280 ~~al~~~p~~~--~a~~~l~~l~~~~~~~~ 307 (316)
+++++.+|+++ .....+|.++.+.|+++
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~ 352 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFI 352 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHH
Confidence 44444444444 44444444444444443
No 99
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.22 E-value=4.3e-11 Score=84.89 Aligned_cols=81 Identities=25% Similarity=0.345 Sum_probs=58.7
Q ss_pred cCChHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 021175 197 RKFYPAATKYLLQAIEKWDGDDQD--LAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS 274 (316)
Q Consensus 197 ~g~~~~A~~~~~~al~~~~~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 274 (316)
.|+|++|+.+++++++. .|. +...++.+|.++++.|++++|++.+++ .+.+|.+....+.+|.++.++|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~----~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL----DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHH----HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHH----CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 56777778888877774 442 566667778888888888888888877 66777777777777888888888888
Q ss_pred HHHHHHHH
Q 021175 275 ALKAFEEV 282 (316)
Q Consensus 275 A~~~~~~a 282 (316)
|++.++++
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 88777764
No 100
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.21 E-value=2.4e-09 Score=98.85 Aligned_cols=147 Identities=13% Similarity=0.103 Sum_probs=126.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175 158 RQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK 237 (316)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~ 237 (316)
......|+...|...+.++++.+|++.+.|...-.+.....++++|...+.++-. ......+|+.-+.....+++
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~-----~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS-----ISGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc-----cCCcchhhHHHhHHHHHhhh
Confidence 3344678999999999999999999999999888888899999999999999887 44557778888888888899
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
.++|+..++++++..|++...|..+|+++.++++.+.|.+.|...++.-|+....|..++.+..+.|..-.|
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhH
Confidence 999999999999999999999999999999999999999999999999999999999999888888765443
No 101
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.21 E-value=7.6e-09 Score=95.50 Aligned_cols=126 Identities=10% Similarity=0.033 Sum_probs=114.9
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHH-HHHHHHHHHHHHcCCHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLA-QVYNALGVSYVREGKLDK 240 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~-~~~~~lg~~~~~~g~~~~ 240 (316)
..|+++.|.+.+.++.+..|+....+...|.++..+|++++|.++++++.+ ..|+.. .+....+.++...|++++
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~----~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAE----LAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCcCchHHHHHHHHHHHHCCCHHH
Confidence 799999999999999999999888889999999999999999999999998 466664 466667999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 021175 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV 291 (316)
Q Consensus 241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 291 (316)
|.+.+++..+.+|+++.++..++.++...|++++|.+.+++..+..+.++.
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999999999999999999999999999999999987554443
No 102
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.21 E-value=6.5e-10 Score=83.81 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=87.4
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175 160 VLVRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG 236 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g 236 (316)
....|++++|++.++++++.+|++ +.+++.+|.++...|++++|++++++++...+ .++..+.++..+|.++...|
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~ 90 (119)
T TIGR02795 12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP-KSPKAPDALLKLGMSLQELG 90 (119)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC-CCCcccHHHHHHHHHHHHhC
Confidence 348999999999999999998876 67899999999999999999999999999533 13335788999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHH
Q 021175 237 KLDKGISQFETAVKLQPGYVTAW 259 (316)
Q Consensus 237 ~~~~A~~~~~~al~~~p~~~~~~ 259 (316)
++++|++.++++++..|++..+.
T Consensus 91 ~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 91 DKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred ChHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999999999987654
No 103
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.8e-11 Score=105.21 Aligned_cols=145 Identities=17% Similarity=0.183 Sum_probs=133.0
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCcc------------HHHHHHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQD------------LAQVYNAL 228 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~------------~~~~~~~l 228 (316)
...+++++|.+.--..++.++.+.++.+..|.+++...+.+.|+.+|++++. ++|+ ....+..-
T Consensus 180 ~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~----ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR----LDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc----cChhhhhHHhHhhhHHHHHHHHhh
Confidence 3688999999999999999999999999999999999999999999999999 4554 34566778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175 229 GVSYVREGKLDKGISQFETAVKLQPGY----VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP 304 (316)
Q Consensus 229 g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~ 304 (316)
|.-.++.|++.+|.+.|.++|.++|++ +..|.+.+.+...+|+..+|+...+.++.++|....++...+.++..++
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987 6789999999999999999999999999999999999999999998888
Q ss_pred CCCCC
Q 021175 305 LYKGV 309 (316)
Q Consensus 305 ~~~~A 309 (316)
+|++|
T Consensus 336 ~~e~A 340 (486)
T KOG0550|consen 336 KWEEA 340 (486)
T ss_pred HHHHH
Confidence 88655
No 104
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.20 E-value=1.1e-10 Score=78.36 Aligned_cols=65 Identities=23% Similarity=0.435 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 021175 188 FELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV 256 (316)
Q Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 256 (316)
+.+|..++..|++++|++.|+++++ .+|+++.+++.+|.++..+|++++|++.|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK----QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC----CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4678999999999999999999999 7999999999999999999999999999999999999875
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.17 E-value=2.5e-09 Score=92.03 Aligned_cols=136 Identities=18% Similarity=0.225 Sum_probs=112.4
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCH---HH------------HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHH
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASA---TE------------YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV 224 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~---~~------------~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~ 224 (316)
.+.+|++++|+..|++.++.+|.+. ++ .......+...|+..-|+++..+.++ ..|.++..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE----i~~Wda~l 191 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE----IQPWDASL 191 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh----cCcchhHH
Confidence 3478888888888888888877431 11 12222344556788888888888888 79999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175 225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL 299 (316)
Q Consensus 225 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l 299 (316)
+...+.||...|+...||..++.+-++..++.+.++.++..++..|+.+.++...+++++++|++...+-....+
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987765544433
No 106
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.17 E-value=7.1e-10 Score=78.88 Aligned_cols=90 Identities=24% Similarity=0.412 Sum_probs=85.2
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
...|++++|+..++++++..|+...++..+|.++...+++++|+++++++++ ..|.+..++..+|.++...|++++
T Consensus 11 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 86 (100)
T cd00189 11 YKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE----LDPDNAKAYYNLGLAYYKLGKYEE 86 (100)
T ss_pred HHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCcchhHHHHHHHHHHHHHhHHH
Confidence 3789999999999999999999999999999999999999999999999999 688888999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 021175 241 GISQFETAVKLQPG 254 (316)
Q Consensus 241 A~~~~~~al~~~p~ 254 (316)
|.+.++++++.+|+
T Consensus 87 a~~~~~~~~~~~~~ 100 (100)
T cd00189 87 ALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHccCCC
Confidence 99999999998874
No 107
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.16 E-value=1.3e-10 Score=82.44 Aligned_cols=82 Identities=15% Similarity=0.234 Sum_probs=72.6
Q ss_pred HhhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175 162 VRRELDLSAKELQEQVRSGDA--SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD 239 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~ 239 (316)
++|++++|+..+++.++.+|. +...++.+|.+++..|+|++|++.+++ .+ .+|.+....+.+|.++..+|+++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~----~~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK----LDPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT----HHHCHHHHHHHHHHHHHHTT-HH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC----CCCCCHHHHHHHHHHHHHhCCHH
Confidence 368999999999999999995 566788899999999999999999999 65 47888899999999999999999
Q ss_pred HHHHHHHHH
Q 021175 240 KGISQFETA 248 (316)
Q Consensus 240 ~A~~~~~~a 248 (316)
+|++.++++
T Consensus 76 eAi~~l~~~ 84 (84)
T PF12895_consen 76 EAIKALEKA 84 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999875
No 108
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=8.7e-09 Score=90.66 Aligned_cols=146 Identities=15% Similarity=0.109 Sum_probs=119.0
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------------------------
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD------------------------ 215 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------------------ 215 (316)
....++.++|+-.|+.+....|.+-++|..+-.+|...|++.||....+.+++..+
T Consensus 344 L~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred HHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHH
Confidence 34677777888888888888887777777777777777777666665555554321
Q ss_pred --------CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175 216 --------GDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287 (316)
Q Consensus 216 --------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 287 (316)
..+|....+-..++..+...|++..++..+++.+...|++ ..+..||.++...+.+++|+++|..+++++|
T Consensus 424 Kkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 424 KKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 1678888888889999999999999999999999988864 5688899999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhCCCC
Q 021175 288 NNKVARPRRDALKDRVPLY 306 (316)
Q Consensus 288 ~~~~a~~~l~~l~~~~~~~ 306 (316)
++..+...+..+++...+.
T Consensus 503 ~~~~sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 503 KSKRTLRGLRLLEKSDDES 521 (564)
T ss_pred cchHHHHHHHHHHhccCCC
Confidence 9999999999888776643
No 109
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.14 E-value=2.2e-09 Score=86.92 Aligned_cols=90 Identities=19% Similarity=0.332 Sum_probs=81.1
Q ss_pred HhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC-
Q 021175 162 VRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK- 237 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~- 237 (316)
..|++++|+..++++++..|+. ..++.++|.++...|++++|+.+++++++ ..|.+...+..+|.++...|+
T Consensus 47 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 47 ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE----LNPKQPSALNNIAVIYHKRGEK 122 (172)
T ss_pred HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCCh
Confidence 8899999999999999887653 57999999999999999999999999999 689999999999999999887
Q ss_pred -------------HHHHHHHHHHHHHhCCCc
Q 021175 238 -------------LDKGISQFETAVKLQPGY 255 (316)
Q Consensus 238 -------------~~~A~~~~~~al~~~p~~ 255 (316)
+++|++.++++++.+|++
T Consensus 123 ~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 123 AEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 577888888888888876
No 110
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=9e-10 Score=101.53 Aligned_cols=146 Identities=12% Similarity=0.139 Sum_probs=137.9
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD 239 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~ 239 (316)
.+..++|.+.++..+..++..|++++.....|..+...|+-++|.++.+.++. .++.+..+|.-+|.++...++|+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr----~d~~S~vCwHv~gl~~R~dK~Y~ 92 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR----NDLKSHVCWHVLGLLQRSDKKYD 92 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc----cCcccchhHHHHHHHHhhhhhHH
Confidence 34788999999999999999999999999999999999999999999999999 79999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
+|+++|+.|+.+.|++.+.+..++..-.++++++.....-.+.++..|+.-..|...+......|++..|
T Consensus 93 eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 93 EAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888888887654
No 111
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.12 E-value=2e-09 Score=97.36 Aligned_cols=151 Identities=10% Similarity=0.046 Sum_probs=128.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH
Q 021175 159 QVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL 238 (316)
Q Consensus 159 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~ 238 (316)
.....|++++|.+.++++++.+|++..++.. +..+...|++..+.....++++.....+|........+|.++...|++
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY 130 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence 3457899999999999999999999988776 666766666666666666666543336788888889999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh----HHHHHHHHHhhCCCCCCCC
Q 021175 239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV----ARPRRDALKDRVPLYKGVP 310 (316)
Q Consensus 239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~l~~l~~~~~~~~~A~ 310 (316)
++|++.++++++++|+++.++..+|.++...|++++|+.++++++...|.++. .+..++.++...|++++|.
T Consensus 131 ~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 131 DRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999875443 3557899999999998763
No 112
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.12 E-value=1.7e-09 Score=103.94 Aligned_cols=154 Identities=18% Similarity=0.276 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCcc--HHHH
Q 021175 147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQD--LAQV 224 (316)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~--~~~~ 224 (316)
++..+|.+|. ...+...|.++|+++.++++.+..+.-..+..|....++++|....-.+-+ ..|. ....
T Consensus 494 af~~LG~iYr-----d~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q----ka~a~~~k~n 564 (1238)
T KOG1127|consen 494 AFAFLGQIYR-----DSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ----KAPAFACKEN 564 (1238)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh----hchHHHHHhh
Confidence 3444455554 555778899999999999999999999999999999999999988666655 2442 3445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175 225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP 304 (316)
Q Consensus 225 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~ 304 (316)
|..+|..|.+.++..+|+..|+.+++.+|++..+|..+|.+|...|++..|++.|.++..++|.+.-+.+-.+.+....|
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence 66799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 021175 305 LYKGV 309 (316)
Q Consensus 305 ~~~~A 309 (316)
.|+++
T Consensus 645 kYkea 649 (1238)
T KOG1127|consen 645 KYKEA 649 (1238)
T ss_pred hHHHH
Confidence 98765
No 113
>PRK11906 transcriptional regulator; Provisional
Probab=99.12 E-value=3.1e-09 Score=95.77 Aligned_cols=128 Identities=10% Similarity=0.025 Sum_probs=116.3
Q ss_pred hhhHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 021175 163 RRELDLSAKELQEQV---RSGDASATEYFELGAVMLRR---------KFYPAATKYLLQAIEKWDGDDQDLAQVYNALGV 230 (316)
Q Consensus 163 ~~~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~ 230 (316)
....+.|...|.+++ ..+|+.+.+|..++.++... .+-.+|.+..++|++ ++|.++.++..+|.
T Consensus 271 ~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve----ld~~Da~a~~~~g~ 346 (458)
T PRK11906 271 PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD----ITTVDGKILAIMGL 346 (458)
T ss_pred HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh----cCCCCHHHHHHHHH
Confidence 345678999999999 99999999999999988764 245678999999999 79999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 021175 231 SYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARP 294 (316)
Q Consensus 231 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 294 (316)
+....++++.|+..|++|+.++|+.+.+++..|.+..-.|+.++|.+..+++++++|.-..+-.
T Consensus 347 ~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 347 ITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred HHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998655543
No 114
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=8.8e-10 Score=87.96 Aligned_cols=115 Identities=22% Similarity=0.365 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC-ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 021175 185 TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD-QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG 263 (316)
Q Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 263 (316)
+.+-.-|+-++..|+|++|...|..|++.+|... .....+|.|.|.+.+++++++.|++.+.++++++|.+..+....+
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 3455668889999999999999999999766421 234667889999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175 264 DAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL 299 (316)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l 299 (316)
.+|.++..+++|+..|++.++.+|...++......+
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 999999999999999999999999988887776554
No 115
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.09 E-value=5e-08 Score=89.68 Aligned_cols=126 Identities=10% Similarity=0.027 Sum_probs=105.4
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHhcCCCCccHHH-HHHHHHHHHHHcCCHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFEL-GAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQ-VYNALGVSYVREGKLD 239 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~-~~~~lg~~~~~~g~~~ 239 (316)
..|++++|.+...+.-+..+. +..++.+ +.+....|++++|.++++++.+ .+|+... .....+.++...|+++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~----~~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAE----LADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHCCCHH
Confidence 579999999888876665443 4444444 5666999999999999999999 5777643 3345599999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175 240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292 (316)
Q Consensus 240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 292 (316)
+|.+.+++..+.+|+++.++..++.+|...|++++|.+.+.+..+..+.++..
T Consensus 171 ~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 171 AARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 99999999999999999999999999999999999999999988877765443
No 116
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.09 E-value=4.2e-09 Score=84.94 Aligned_cols=91 Identities=20% Similarity=0.274 Sum_probs=77.8
Q ss_pred HhhhHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH-----
Q 021175 162 VRRELDLSAKELQEQVRSGDA---SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYV----- 233 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~----- 233 (316)
..|++++|+..+++++...|+ .+.++.++|.++...|++++|++.++++++ .+|.....+.++|.++.
T Consensus 47 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~----~~~~~~~~~~~la~i~~~~~~~ 122 (168)
T CHL00033 47 SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE----RNPFLPQALNNMAVICHYRGEQ 122 (168)
T ss_pred HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCcHHHHHHHHHHHHHhhHH
Confidence 789999999999999988775 346899999999999999999999999999 68888888888888888
Q ss_pred --HcCCHH-------HHHHHHHHHHHhCCCcH
Q 021175 234 --REGKLD-------KGISQFETAVKLQPGYV 256 (316)
Q Consensus 234 --~~g~~~-------~A~~~~~~al~~~p~~~ 256 (316)
.+|+++ +|+..+++++..+|++.
T Consensus 123 ~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 123 AIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 777877 55666666777777653
No 117
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.09 E-value=4.1e-09 Score=79.31 Aligned_cols=99 Identities=18% Similarity=0.082 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHH
Q 021175 185 TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPG---YVTAWNN 261 (316)
Q Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 261 (316)
.+++++|.++-..|+.++|+.+|+++++... ..+.-..++..+|.++...|++++|+..+++++...|+ +......
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGL-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 5788999999999999999999999998421 23455779999999999999999999999999999888 7788888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 021175 262 LGDAYEKKKDLKSALKAFEEVLL 284 (316)
Q Consensus 262 lg~~~~~~g~~~~A~~~~~~al~ 284 (316)
++.++...|+.++|+..+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999988775
No 118
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.08 E-value=4e-09 Score=88.83 Aligned_cols=112 Identities=20% Similarity=0.238 Sum_probs=102.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHH
Q 021175 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY---VTAWNNLG 263 (316)
Q Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg 263 (316)
.++.+.-++..|+|.+|.+-|.+-++.+|. .+..+.+++.||.+++.+|+|++|...|..+.+-.|++ +++++.+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 799999999999999999999999997773 66778999999999999999999999999999998876 78999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175 264 DAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL 299 (316)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l 299 (316)
.+...+|+.++|...|+++++.-|+...+......+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 999999999999999999999999988877655444
No 119
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=8.4e-09 Score=90.75 Aligned_cols=146 Identities=12% Similarity=0.062 Sum_probs=122.4
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD 239 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~ 239 (316)
.+..++++.|+.+-+++++.+|++..++...|.++...|+.++|+-.|+.|.. +.|...++|-.|-.+|...|++.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~----Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM----LAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh----cchhhHHHHHHHHHHHHhhchHH
Confidence 45678899999999999999999999999999999999999999999999999 78999999999999999999998
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 240 KGISQFETAVKLQPGYVTAWNNLG-DAY-EKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 240 ~A~~~~~~al~~~p~~~~~~~~lg-~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
||...-+.+++.-|+++.+.-.+| .++ ..---.++|.+.++++++++|++..+...++.+...-|.++++
T Consensus 386 EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 386 EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchH
Confidence 888888888888888888877776 333 3333447788888888888888888888888888777777653
No 120
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.08 E-value=3.9e-10 Score=96.89 Aligned_cols=109 Identities=20% Similarity=0.204 Sum_probs=102.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 021175 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAY 266 (316)
Q Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 266 (316)
.-..|+.|+++|+|++|++||.+++. ..|.++..+.|.+.+|++.+++..|...++.|+.++..+..+|...|.+.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia----~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIA----VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQAR 175 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhc----cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 46789999999999999999999999 79999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175 267 EKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL 299 (316)
Q Consensus 267 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l 299 (316)
..+|...+|.+.++.++++.|++.+....++.+
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 999999999999999999999988776666544
No 121
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.08 E-value=2.6e-09 Score=91.85 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=89.3
Q ss_pred HhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH
Q 021175 162 VRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL 238 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~ 238 (316)
..|++++|+..|++.++..|+. +.+++.+|.+|+..|++++|+..|+++++.+| .+|..+.+++.+|.++..+|++
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHHHHHHHHHcCCH
Confidence 5789999999999999999987 58999999999999999999999999999766 4777899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHH
Q 021175 239 DKGISQFETAVKLQPGYVTA 258 (316)
Q Consensus 239 ~~A~~~~~~al~~~p~~~~~ 258 (316)
++|.+.|+++++..|+...+
T Consensus 234 ~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999998654
No 122
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4e-09 Score=92.94 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=109.2
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCC---------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHH
Q 021175 160 VLVRRELDLSAKELQEQVRSGDA---------------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV 224 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~ 224 (316)
+++.|+|..|...|++++..-+. ...++.|++.++.++++|.+|+.+-.++++ ++|++..+
T Consensus 218 ~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe----~~~~N~KA 293 (397)
T KOG0543|consen 218 LFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE----LDPNNVKA 293 (397)
T ss_pred HHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh----cCCCchhH
Confidence 34899999999999998874331 135899999999999999999999999999 79999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCC
Q 021175 225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS-ALKAFEEVLLFDP 287 (316)
Q Consensus 225 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~-A~~~~~~al~~~p 287 (316)
++..|.++..+|+|+.|+..|+++++++|++..+...+..+-.+..++.+ ..+.|.+.+..-+
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999887766654 4788888887654
No 123
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.06 E-value=7.1e-09 Score=93.70 Aligned_cols=121 Identities=17% Similarity=0.236 Sum_probs=109.1
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
..++++.|++.+++..+.+|+ +...++.++...++..+|++.++++++ ..|.+...+...+..+..+++++.|
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~----~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALK----ENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 567899999999999998875 567789999999999999999999999 6899999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 289 (316)
++..+++++..|++...|+.|+.+|..+|++++|+..++.+=...+++
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~ 301 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKD 301 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCcc
Confidence 999999999999999999999999999999999998887554443333
No 124
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.05 E-value=6.9e-10 Score=75.17 Aligned_cols=66 Identities=24% Similarity=0.326 Sum_probs=53.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 021175 233 VREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDA 298 (316)
Q Consensus 233 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~ 298 (316)
+..|++++|++.|+++++.+|++..+++.+|.+|.+.|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 567888888888888888888888888888888888888888888888888888887777666654
No 125
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.04 E-value=5.7e-10 Score=104.09 Aligned_cols=125 Identities=20% Similarity=0.315 Sum_probs=95.6
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD 239 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~ 239 (316)
.+.+++++++.++++..++++|-....|+.+|.+..+.++++.|.+.|.+++. ++|++.++|+|++.+|...|+..
T Consensus 495 ~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt----L~Pd~~eaWnNls~ayi~~~~k~ 570 (777)
T KOG1128|consen 495 ILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT----LEPDNAEAWNNLSTAYIRLKKKK 570 (777)
T ss_pred cccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh----cCCCchhhhhhhhHHHHHHhhhH
Confidence 34567777777777777777777777777777777777777777777777777 67777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 021175 240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288 (316)
Q Consensus 240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 288 (316)
+|...+++|++.+-+++..|-|.-.+..+.|.+++|++.|.+.+.+..+
T Consensus 571 ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 571 RAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 7777777777777777777777777777777777777777777765433
No 126
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.04 E-value=1.4e-09 Score=74.69 Aligned_cols=70 Identities=20% Similarity=0.344 Sum_probs=55.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 021175 229 GVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDA 298 (316)
Q Consensus 229 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~ 298 (316)
..+|...+++++|+++++++++++|+++..+...|.++..+|++++|...++++++.+|+++.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4567788888888888888888888888888888888888888888888888888888877776655543
No 127
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.04 E-value=2.6e-09 Score=99.83 Aligned_cols=144 Identities=20% Similarity=0.236 Sum_probs=126.8
Q ss_pred HhhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 162 VRRELDLSAKELQEQVRSGD-ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
..||.-.--..|+++.+... .++.+...+|......++|+++.++++..++ ++|.....|+++|.+..+.++++.
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~----~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLE----INPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhh----cCccchhHHHhccHHHHHHhhhHH
Confidence 34454444556666666543 3566788888888889999999999999999 799999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
|.+.|..++.++|++..+|+|++..|...|+..+|...++++++.+-+++..|.|.-.+..+.|.+++|
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence 999999999999999999999999999999999999999999999999999999998888888887654
No 128
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.03 E-value=1.2e-08 Score=78.07 Aligned_cols=111 Identities=21% Similarity=0.327 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 021175 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY---VTAW 259 (316)
Q Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 259 (316)
.+..++.-|...++.|+|++|++.|+.....+| ..|....+...+|.+|++.|++++|+..+++-++++|++ .-++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYP-FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 466788999999999999999999999998776 467778899999999999999999999999999999987 4678
Q ss_pred HHHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCChhHHH
Q 021175 260 NNLGDAYEKKKD---------------LKSALKAFEEVLLFDPNNKVARP 294 (316)
Q Consensus 260 ~~lg~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~a~~ 294 (316)
+..|.++..+.+ ..+|...|++.++.-|++.-+-.
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 889999888876 78999999999999999876543
No 129
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.99 E-value=3.5e-08 Score=91.43 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=111.0
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
.+.++++|...|.++....| ....|+.-+.....+++.++|++.++++++ ..|+....|..+|.++.++++.+.|
T Consensus 630 en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk----~fp~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALK----SFPDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred ccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHH----hCCchHHHHHHHhHHHHHHHHHHHH
Confidence 56677778888887777655 456677777777777888888888888888 5777788888888888888888888
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
.+.|...++.-|+....|..|+.+-.+.|+.-.|...++++.-.+|++...|...-+++.+.|+.+.|
T Consensus 705 R~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 705 REAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHH
Confidence 88888888888888888888888888888888888888888888888887777777777777765543
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.99 E-value=8.7e-09 Score=100.99 Aligned_cols=121 Identities=15% Similarity=0.175 Sum_probs=107.4
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---------------CCccHHHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG---------------DDQDLAQVYN 226 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------------~~p~~~~~~~ 226 (316)
..++++++++.++.+++.+|+....++.+|.++...++++++... +++...+. ..+++-.+++
T Consensus 43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~ 120 (906)
T PRK14720 43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALR 120 (906)
T ss_pred hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHH
Confidence 899999999999999999999999999999999999988877766 66653221 1234447999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 227 ALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 227 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
.+|.||-++|++++|.+.|+++++.+|+++.+..++|..|... +.++|..++.+|++.
T Consensus 121 ~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 121 TLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 999999999999876
No 131
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.96 E-value=3.2e-09 Score=95.59 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=60.4
Q ss_pred cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 021175 179 SGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV---YNALGVSYVREGKLDKGISQFETAVKL 251 (316)
Q Consensus 179 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~ 251 (316)
.+|+++.+++++|.++...|+|++|+..|+++++ ++|++..+ |+|+|.+|..+|++++|++++++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALe----L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALE----LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6788889999999999999999999999999998 68887754 899999999999999999999999887
No 132
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.96 E-value=6.5e-08 Score=84.73 Aligned_cols=169 Identities=15% Similarity=0.091 Sum_probs=118.3
Q ss_pred ccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCC------CCHHHHHHH
Q 021175 117 ASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGD------ASATEYFEL 190 (316)
Q Consensus 117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l 190 (316)
-++...|.+.|..+..........+. ..-.+...+.. +...++++|++.+++++...- .-+.++..+
T Consensus 48 ~~~~~~A~~ay~kAa~~~~~~~~~~~-Aa~~~~~Aa~~------~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 48 AKDWEKAAEAYEKAADCYEKLGDKFE-AAKAYEEAANC------YKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp TT-CHHHHHHHHHHHHHHHHTT-HHH-HHHHHHHHHHH------HHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HhccchhHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHH------HHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34555566677655444433322221 11222333333 356699999999999988532 226789999
Q ss_pred HHHHHHc-CChHHHHHHHHHHHHhcCCCC-c-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHH
Q 021175 191 GAVMLRR-KFYPAATKYLLQAIEKWDGDD-Q-DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY-------VTAWN 260 (316)
Q Consensus 191 g~~~~~~-g~~~~A~~~~~~al~~~~~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 260 (316)
|.+|... |++++|+++|++|++.+...+ + ....++..+|.++...|+|++|++.|++.....-++ ...++
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 9999999 999999999999999765322 2 335678899999999999999999999998754221 24556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175 261 NLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292 (316)
Q Consensus 261 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 292 (316)
..+.|+...||...|...+++....+|+....
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 78889999999999999999999999976443
No 133
>PRK15331 chaperone protein SicA; Provisional
Probab=98.95 E-value=1.7e-08 Score=78.99 Aligned_cols=94 Identities=14% Similarity=-0.033 Sum_probs=87.6
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD 239 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~ 239 (316)
.+.+|++++|...|+-....+|.+++.+..||.++..+++|++|+..|..+.. ++++++...+..|.||..+|+.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~----l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT----LLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cccCCCCccchHHHHHHHhCCHH
Confidence 45899999999999999999999999999999999999999999999999999 68999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHH
Q 021175 240 KGISQFETAVKLQPGYVTA 258 (316)
Q Consensus 240 ~A~~~~~~al~~~p~~~~~ 258 (316)
+|...|+.++. .|.+...
T Consensus 123 ~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 123 KARQCFELVNE-RTEDESL 140 (165)
T ss_pred HHHHHHHHHHh-CcchHHH
Confidence 99999999998 5665443
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.95 E-value=6.1e-08 Score=95.16 Aligned_cols=134 Identities=15% Similarity=0.174 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175 168 LSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFET 247 (316)
Q Consensus 168 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 247 (316)
.+++++.+.+...+++..+++.+|.+|.++|++++|.+.|+++++ .+|+++.+.+++|..|... +.++|++++.+
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~----~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK----ADRDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 566677777777777779999999999999999999999999999 7999999999999999999 99999999999
Q ss_pred HHHhC--------------------CCcHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175 248 AVKLQ--------------------PGYVT--------------------AWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287 (316)
Q Consensus 248 al~~~--------------------p~~~~--------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 287 (316)
|+... |++.+ .+.-+-.+|...+++++++..++.+++.+|
T Consensus 175 AV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 175 AIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred HHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence 88652 33322 222333788899999999999999999999
Q ss_pred CChhHHHHHHHHHhhCCCCCC
Q 021175 288 NNKVARPRRDALKDRVPLYKG 308 (316)
Q Consensus 288 ~~~~a~~~l~~l~~~~~~~~~ 308 (316)
+|..+...+..++. +.|++
T Consensus 255 ~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 255 KNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred cchhhHHHHHHHHH--HHccC
Confidence 99999999998887 45543
No 135
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.93 E-value=9.8e-08 Score=89.52 Aligned_cols=150 Identities=15% Similarity=0.110 Sum_probs=118.3
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhcC-------------------
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRK-----FYPAATKYLLQAIEKWD------------------- 215 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~------------------- 215 (316)
++..|++++|...|++.++.+|++...+..+..+..... +.+.-.+.|++....+|
T Consensus 48 l~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~ 127 (517)
T PF12569_consen 48 LLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFK 127 (517)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHH
Confidence 448899999999999999999999988888888773332 34444555555443221
Q ss_pred --------------------------------------------------CC--------CccH--HHHHHHHHHHHHHc
Q 021175 216 --------------------------------------------------GD--------DQDL--AQVYNALGVSYVRE 235 (316)
Q Consensus 216 --------------------------------------------------~~--------~p~~--~~~~~~lg~~~~~~ 235 (316)
.. .|.. ..+++.++..|-..
T Consensus 128 ~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 128 ERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 00 1111 34668889999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 236 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
|++++|+++.++||+..|..++.|+..|.++...|++++|.++++.+..+|+.+--.-...+....+.|+.++|
T Consensus 208 g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A 281 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEA 281 (517)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998877777777777777777655
No 136
>PRK11906 transcriptional regulator; Provisional
Probab=98.91 E-value=8.3e-08 Score=86.72 Aligned_cols=160 Identities=11% Similarity=0.007 Sum_probs=120.1
Q ss_pred chHHHHHHHHHHh---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175 119 ENVQMDAVYEIGE---LFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML 195 (316)
Q Consensus 119 ~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 195 (316)
+...|..++..+. ..+|.....+... ++......+.+... ...+..+|.+..+++++.+|.++.++..+|.+..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~l--A~~h~~~~~~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLL--AECHMSLALHGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHH--HHHHHHHHHhcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3445555666555 4555545444433 22222222222212 4667789999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHcCCHHH
Q 021175 196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWN-NLGDAYEKKKDLKS 274 (316)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~lg~~~~~~g~~~~ 274 (316)
..++++.|...|++|+. ++|+.+.+++..|.+..-.|+.++|.+.++++++++|.-..+-. .+..-.+-....++
T Consensus 350 ~~~~~~~a~~~f~rA~~----L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
T PRK11906 350 LSGQAKVSHILFEQAKI----HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKN 425 (458)
T ss_pred hhcchhhHHHHHHHHhh----cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhh
Confidence 99999999999999999 79999999999999999999999999999999999998754433 33331344566788
Q ss_pred HHHHHHHHHhc
Q 021175 275 ALKAFEEVLLF 285 (316)
Q Consensus 275 A~~~~~~al~~ 285 (316)
|++.|-+-.+.
T Consensus 426 ~~~~~~~~~~~ 436 (458)
T PRK11906 426 NIKLYYKETES 436 (458)
T ss_pred hHHHHhhcccc
Confidence 98887665443
No 137
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.90 E-value=4.2e-09 Score=73.38 Aligned_cols=67 Identities=25% Similarity=0.367 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC---ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD---QDLAQVYNALGVSYVREGKLDKGISQFETAVK 250 (316)
Q Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 250 (316)
+.++.++|.++...|++++|+++|+++++...... |..+.++.++|.++..+|++++|+++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555555555555555421111 12234444444444444444444444444444
No 138
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.89 E-value=5.3e-08 Score=83.09 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHH
Q 021175 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY---VTA 258 (316)
Q Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~ 258 (316)
..+..++..|......|+|++|++.|++.+...|. .|.-..+.+.+|.+|++.+++++|+..+++.++.+|++ +.+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 46777889999999999999999999999996442 34445566999999999999999999999999999987 678
Q ss_pred HHHHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCChh
Q 021175 259 WNNLGDAYEKKK---------------D---LKSALKAFEEVLLFDPNNKV 291 (316)
Q Consensus 259 ~~~lg~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~ 291 (316)
++.+|.++...+ | ..+|+..+++.++..|++.-
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y 159 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY 159 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh
Confidence 899998875554 1 25788999999999998743
No 139
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.88 E-value=5.1e-09 Score=70.87 Aligned_cols=64 Identities=20% Similarity=0.291 Sum_probs=34.9
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 021175 196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG 263 (316)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 263 (316)
..|++++|++.|+++++ .+|++..+++.+|.+|...|++++|.+.+++++..+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ----RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHH----HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 44555555555555555 35555555555555555555555555555555555555554444443
No 140
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.88 E-value=1.4e-08 Score=69.76 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=62.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 021175 190 LGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG 263 (316)
Q Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 263 (316)
|..+|...+++++|+++++++++ .+|+++..+..+|.++..+|++++|++.++++++..|++..+....+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALE----LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHH----hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 35678899999999999999999 69999999999999999999999999999999999998887765544
No 141
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.88 E-value=1e-07 Score=79.28 Aligned_cols=110 Identities=25% Similarity=0.375 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 021175 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY---VTAW 259 (316)
Q Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 259 (316)
.+..++..|...+..|+|++|++.|++.+...| ..|....+.+.+|.+++..|++++|+..+++.++..|++ +.++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 567899999999999999999999999999877 377889999999999999999999999999999999987 5788
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChhHH
Q 021175 260 NNLGDAYEKKK-----------DLKSALKAFEEVLLFDPNNKVAR 293 (316)
Q Consensus 260 ~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~a~ 293 (316)
+.+|.++..+. ...+|...|++.++..|+++-+.
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~ 127 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE 127 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH
Confidence 99999876643 34589999999999999986554
No 142
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.88 E-value=6.4e-09 Score=72.47 Aligned_cols=69 Identities=28% Similarity=0.472 Sum_probs=59.8
Q ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 021175 218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ---P----GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFD 286 (316)
Q Consensus 218 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 286 (316)
+|+.+.++.++|.+|..+|++++|+++|++++++. + ..+.++.++|.++..+|++++|++++++++++.
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 47788999999999999999999999999999762 2 236789999999999999999999999999763
No 143
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.87 E-value=3.3e-08 Score=89.16 Aligned_cols=69 Identities=26% Similarity=0.322 Sum_probs=63.6
Q ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 217 DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTA---WNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 217 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
.+|+++.+++|+|.+|+.+|+|++|+..|+++++++|++.++ |+|+|.+|..+|++++|++++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999999999854 999999999999999999999999987
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.87 E-value=8e-08 Score=75.48 Aligned_cols=113 Identities=13% Similarity=0.042 Sum_probs=95.0
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCH
Q 021175 196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY---VTAWNNLGDAYEKKKDL 272 (316)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~ 272 (316)
..++.+.+.+.+++.++..+ ..+....+.+.+|.+++..|++++|++.|++++...|+. ..+...++.++...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 57888999888999998433 133347788889999999999999999999999988665 56888999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCC
Q 021175 273 KSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVP 310 (316)
Q Consensus 273 ~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~ 310 (316)
++|+..++. +.-.+-.+.+...+|.++.+.|++++|.
T Consensus 102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~ 138 (145)
T PF09976_consen 102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEAR 138 (145)
T ss_pred HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHH
Confidence 999999976 4445566788899999999999998763
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.3e-08 Score=85.23 Aligned_cols=106 Identities=17% Similarity=0.157 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHH
Q 021175 200 YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK---DLKSAL 276 (316)
Q Consensus 200 ~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~ 276 (316)
.++-+.-++.-++ .+|++++-|..||.+|+.+|+++.|...|++|+++.|++++.+..+|.++..+. ...++.
T Consensus 138 ~~~l~a~Le~~L~----~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 138 MEALIARLETHLQ----QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred HHHHHHHHHHHHH----hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 4455556677777 599999999999999999999999999999999999999999999999877643 357899
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 277 KAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 277 ~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
..+++++..+|++..+...|+..+...|+|++|
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe~g~~~~A 246 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFEQGDYAEA 246 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHH
Confidence 999999999999999999999999999999765
No 146
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=9.8e-08 Score=83.51 Aligned_cols=131 Identities=18% Similarity=0.163 Sum_probs=98.3
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRK--FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK 237 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~ 237 (316)
++..++.+.|.+.+++..+.+++..-.....+.+....| ++++|...|++..+ ..+.++..++.++.+++.+|+
T Consensus 141 ~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~----~~~~t~~~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD----KFGSTPKLLNGLAVCHLQLGH 216 (290)
T ss_dssp HHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC----CS--SHHHHHHHHHHHHHCT-
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh----ccCCCHHHHHHHHHHHHHhCC
Confidence 447888899999998887777665555555555555544 58899999999776 356677888889999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChhHHH
Q 021175 238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDL-KSALKAFEEVLLFDPNNKVARP 294 (316)
Q Consensus 238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~ 294 (316)
|++|.+.++++++.+|+++++..|+..+...+|+. +.+.+++.+....+|+++....
T Consensus 217 ~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 217 YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999999999999998888888 5566777777778888775543
No 147
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.85 E-value=4.8e-08 Score=94.16 Aligned_cols=145 Identities=19% Similarity=0.214 Sum_probs=134.2
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
..+++...+...|-++++++|..+.++..+|..|...-|...|.++|++|.+ +++.++.+.-..+.+|....++++
T Consensus 469 ~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe----LDatdaeaaaa~adtyae~~~we~ 544 (1238)
T KOG1127|consen 469 CMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE----LDATDAEAAAASADTYAEESTWEE 544 (1238)
T ss_pred HhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCchhhhhHHHHHHHhhccccHHH
Confidence 3456688999999999999999999999999999999999999999999999 799999999999999999999999
Q ss_pred HHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 241 GISQFETAVKLQPGY--VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 241 A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
|.+..-.+-+..|.. ...|..+|..|.+.++..+|+..++.+++.+|++...|..++..|.+.|++..|
T Consensus 545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~A 615 (1238)
T KOG1127|consen 545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHA 615 (1238)
T ss_pred HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehH
Confidence 999988888888765 355667999999999999999999999999999999999999999999998755
No 148
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.85 E-value=3.4e-08 Score=86.42 Aligned_cols=137 Identities=17% Similarity=0.026 Sum_probs=114.2
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC--CHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG--KLD 239 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g--~~~ 239 (316)
..|++++|++.+.+. ...++......++...++++.|.+.+++..+ .+.+..-+....+.+....| +++
T Consensus 114 ~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~----~~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQ----IDEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp CCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC----CSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHhCchhHH
Confidence 689999998877653 5677888888999999999999999999877 67776666666666666666 599
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCC
Q 021175 240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYK 307 (316)
Q Consensus 240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~ 307 (316)
+|...|++..+..+..+...+.++.++..+|++++|.+.++++++.+|+++++..++..+...+|+..
T Consensus 185 ~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 185 DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh
Confidence 99999999888888899999999999999999999999999999999999999999999999888763
No 149
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.82 E-value=7.3e-08 Score=87.18 Aligned_cols=112 Identities=16% Similarity=0.097 Sum_probs=102.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 021175 191 GAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK 270 (316)
Q Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 270 (316)
-..+...+++++|++.+++..+ .+|+ +...++.++...++..+|++.++++++.+|.+...+...+..+.+.|
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~----~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRE----RDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHh----cCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 3445567899999999999998 4665 56668999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 271 DLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 271 ~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
+++.|++..++++++.|++-..|..|+.+|..+|++++|
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999999999999999999876
No 150
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=5.8e-08 Score=78.71 Aligned_cols=90 Identities=11% Similarity=0.074 Sum_probs=81.7
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
..|-++-|.-.|.+++.+.|+.+++++.+|..+...|+|+.|.+.|+..++ ++|....++.|.|..++.-|+++-|
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E----LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE----LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc----cCCcchHHHhccceeeeecCchHhh
Confidence 567777888889999999999999999999999999999999999999999 7999999999999999999999999
Q ss_pred HHHHHHHHHhCCCc
Q 021175 242 ISQFETAVKLQPGY 255 (316)
Q Consensus 242 ~~~~~~al~~~p~~ 255 (316)
.+.+.+--+-+|++
T Consensus 153 q~d~~~fYQ~D~~D 166 (297)
T COG4785 153 QDDLLAFYQDDPND 166 (297)
T ss_pred HHHHHHHHhcCCCC
Confidence 99888888888777
No 151
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.81 E-value=4.4e-08 Score=77.40 Aligned_cols=67 Identities=13% Similarity=0.167 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 021175 165 ELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFY----------PAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR 234 (316)
Q Consensus 165 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~ 234 (316)
-++.|.+.++.....+|.+++.+++-|.++..+.++ ++|+.-|++|+. ++|+...+++++|.+|..
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~----I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK----INPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH----H-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHH
Confidence 467778888888888888888888888888766433 233333444444 355555555555555544
Q ss_pred c
Q 021175 235 E 235 (316)
Q Consensus 235 ~ 235 (316)
.
T Consensus 82 ~ 82 (186)
T PF06552_consen 82 L 82 (186)
T ss_dssp H
T ss_pred H
Confidence 3
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.80 E-value=1.6e-07 Score=88.43 Aligned_cols=131 Identities=20% Similarity=0.094 Sum_probs=100.3
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Q 021175 118 SENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRS--GDASATEYFELGAVML 195 (316)
Q Consensus 118 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 195 (316)
.+...+.++++.+...+|+....+.....++..... + ......+.+++.+..++++.. +|..+.++..+|..+.
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~-~---~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~ 431 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHS-Q---QPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQAL 431 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh-c---CCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH
Confidence 345667778887777777776554443222211100 0 001234566777777777664 7778899999999999
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 021175 196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVT 257 (316)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 257 (316)
..|++++|...+++|++ ++|+ ..+|..+|.++...|++++|++.|++|++++|.++.
T Consensus 432 ~~g~~~~A~~~l~rAl~----L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 432 VKGKTDEAYQAINKAID----LEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcCCHHHHHHHHHHHHH----cCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 99999999999999999 6884 789999999999999999999999999999999875
No 153
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.80 E-value=1.8e-07 Score=74.13 Aligned_cols=117 Identities=16% Similarity=0.147 Sum_probs=61.3
Q ss_pred HHHHhhhHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHHHHc
Q 021175 159 QVLVRRELDLSAKELQEQVR-SGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ--DLAQVYNALGVSYVRE 235 (316)
Q Consensus 159 ~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p--~~~~~~~~lg~~~~~~ 235 (316)
.....|++.+|...|++++. +.-+++..+..+++..+..+++.+|...+++..+ .+| ..+.....+|.++...
T Consensus 98 al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e----~~pa~r~pd~~Ll~aR~laa~ 173 (251)
T COG4700 98 ALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME----YNPAFRSPDGHLLFARTLAAQ 173 (251)
T ss_pred HHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh----cCCccCCCCchHHHHHHHHhc
Confidence 33455555555555555554 3344555555555555555555555555555555 233 2344445555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021175 236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFE 280 (316)
Q Consensus 236 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 280 (316)
|++++|...|+.++...|+ +++....+..+.++|+.++|...+.
T Consensus 174 g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 174 GKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred CCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHH
Confidence 5555555555555555553 3444445555555555554444333
No 154
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.79 E-value=1.1e-06 Score=73.72 Aligned_cols=149 Identities=18% Similarity=0.184 Sum_probs=124.0
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc-
Q 021175 160 VLVRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE- 235 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~- 235 (316)
.++.|++++|++.|++.....|.. ..+...++.++++.+++++|+...++-+++.|. +|+...+++..|.+++..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~-~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT-HPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-CCChhHHHHHHHHHHhccC
Confidence 448999999999999999988854 679999999999999999999999999998774 788888999999998753
Q ss_pred -------CCHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-
Q 021175 236 -------GKLDKGISQFETAVKLQPGYV-----------------TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK- 290 (316)
Q Consensus 236 -------g~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~- 290 (316)
.-..+|+..+++.++..|+.. .--...|..|.+.|.+..|...++++++.-|+..
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~ 202 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSA 202 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccc
Confidence 234678899999999999871 1224678899999999999999999999877754
Q ss_pred --hHHHHHHHHHhhCCCCCCC
Q 021175 291 --VARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 291 --~a~~~l~~l~~~~~~~~~A 309 (316)
+++..+...+..+|..++|
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 203 VREALARLEEAYYALGLTDEA 223 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHH
Confidence 5566667778888876654
No 155
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.76 E-value=4e-07 Score=68.51 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=77.5
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175 160 VLVRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG 236 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g 236 (316)
....|+.++|+..|++++...... ..++.++|..+...|++++|+..+++++...| .++.+......++.++...|
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p-~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP-DDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHHCC
Confidence 347999999999999999976543 67999999999999999999999999999432 12337888888999999999
Q ss_pred CHHHHHHHHHHHHH
Q 021175 237 KLDKGISQFETAVK 250 (316)
Q Consensus 237 ~~~~A~~~~~~al~ 250 (316)
++++|++.+-+++.
T Consensus 90 r~~eAl~~~l~~la 103 (120)
T PF12688_consen 90 RPKEALEWLLEALA 103 (120)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988875
No 156
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=2.3e-07 Score=74.40 Aligned_cols=104 Identities=13% Similarity=0.228 Sum_probs=92.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 021175 158 RQVLVRRELDLSAKELQEQVRSGDAS-----ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY 232 (316)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~ 232 (316)
+.++.+|+|++|...|+.++...|.. .-.+.|.|.+.++++.++.|++-..++++ ++|.+..+....+.+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie----l~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE----LNPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh----cCchhHHHHHHHHHHH
Confidence 34458999999999999999999865 45788999999999999999999999999 7999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 021175 233 VREGKLDKGISQFETAVKLQPGYVTAWNNLGDA 265 (316)
Q Consensus 233 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 265 (316)
.++.+|++|++.|++.++++|...++.-....+
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 999999999999999999999876665544433
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.74 E-value=1.9e-07 Score=81.78 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=103.2
Q ss_pred HhhhHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-Cc-cHHHHHHHHHHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGD------ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD-DQ-DLAQVYNALGVSYV 233 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~p-~~~~~~~~lg~~~~ 233 (316)
..+++++|.+.|.++....- .....+...+.++.+. ++++|+++|+++++.+... .| .-+.++.++|.+|.
T Consensus 47 ~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye 125 (282)
T PF14938_consen 47 LAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE 125 (282)
T ss_dssp HTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC
T ss_pred HHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 67888888888888765322 2245677777777655 9999999999999975432 23 34778999999999
Q ss_pred Hc-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-------hHHHHHHHH
Q 021175 234 RE-GKLDKGISQFETAVKLQPGY------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK-------VARPRRDAL 299 (316)
Q Consensus 234 ~~-g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~~~l~~l 299 (316)
.. |++++|+++|++|+++.... ..++..+|.++...|+|++|++.|++.....-++. ........+
T Consensus 126 ~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~ 205 (282)
T PF14938_consen 126 EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILC 205 (282)
T ss_dssp CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 99 99999999999999874321 46778999999999999999999999987543322 122334445
Q ss_pred HhhCCCC
Q 021175 300 KDRVPLY 306 (316)
Q Consensus 300 ~~~~~~~ 306 (316)
+...||.
T Consensus 206 ~L~~~D~ 212 (282)
T PF14938_consen 206 HLAMGDY 212 (282)
T ss_dssp HHHTT-H
T ss_pred HHHcCCH
Confidence 5555554
No 158
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.73 E-value=3.4e-07 Score=68.32 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=82.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHH
Q 021175 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY----VTAWNNL 262 (316)
Q Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 262 (316)
+-..|......|+.+.|++.|.+++. +.|..+.+|+|.+.++.-+|+.++|++.+++|+++.... -.++...
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~----l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR 121 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALC----LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR 121 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHH----hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 44567778888999999999999999 688899999999999999999999999999999886543 3577888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 021175 263 GDAYEKKKDLKSALKAFEEVLLFDPN 288 (316)
Q Consensus 263 g~~~~~~g~~~~A~~~~~~al~~~p~ 288 (316)
|.+|..+|+-+.|...|+.+.++...
T Consensus 122 g~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 122 GLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 99999999999999999888877543
No 159
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.72 E-value=4.2e-07 Score=69.71 Aligned_cols=100 Identities=15% Similarity=0.187 Sum_probs=88.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 021175 157 IRQVLVRRELDLSAKELQEQVRSGDA---SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYV 233 (316)
Q Consensus 157 ~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~ 233 (316)
+.+.+..|+|++|++.++......|. ...+...+|.+|+..+++++|+..+++-+++.|. +|+...+++..|.+++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~-hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT-HPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CCCccHHHHHHHHHHH
Confidence 34456899999999999999998885 4679999999999999999999999999997663 6777889999999999
Q ss_pred HcCC---------------HHHHHHHHHHHHHhCCCcHH
Q 021175 234 REGK---------------LDKGISQFETAVKLQPGYVT 257 (316)
Q Consensus 234 ~~g~---------------~~~A~~~~~~al~~~p~~~~ 257 (316)
.+.+ ..+|...|++.++..|++.-
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 9887 88999999999999999754
No 160
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.72 E-value=3.9e-07 Score=76.95 Aligned_cols=100 Identities=18% Similarity=0.258 Sum_probs=92.1
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175 160 VLVRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG 236 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g 236 (316)
.+..|+|.+|+..|.+-++..|+. +.+++=||.+++.+|+|++|...|..+++-+|+ .|.-+++++.+|.+..++|
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~-s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK-SPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHHHhc
Confidence 458999999999999999999975 789999999999999999999999999997774 7788999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHH
Q 021175 237 KLDKGISQFETAVKLQPGYVTAWN 260 (316)
Q Consensus 237 ~~~~A~~~~~~al~~~p~~~~~~~ 260 (316)
+.++|-..|+++++..|+...+..
T Consensus 230 ~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 230 NTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999876544
No 161
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.71 E-value=1.6e-05 Score=63.26 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=118.7
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Q 021175 165 ELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQ 244 (316)
Q Consensus 165 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 244 (316)
|.+.......+.+++.|. ..-.+.+|+...+.|++.||..+|++++.- +..+++.....++...+..+++.+|...
T Consensus 71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG---~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSG---IFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhcc---ccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 445555555556666664 345789999999999999999999999983 4567889999999999999999999999
Q ss_pred HHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCC
Q 021175 245 FETAVKLQPG--YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVP 310 (316)
Q Consensus 245 ~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~ 310 (316)
+++..+.+|. .++....+|.++..+|++.+|...|+.++...|+ +++....+....++|+.+++.
T Consensus 147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHH
Confidence 9999999986 4788899999999999999999999999999886 567777788888888776553
No 162
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=4e-07 Score=77.34 Aligned_cols=143 Identities=14% Similarity=0.053 Sum_probs=100.7
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
...+|+.+++.+..-.+.+|..-..+..+|.+|+...+|..|.++|++.-. +.|.........+..+++.+.+..|
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q----l~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ----LHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hChHHHHHHHHHHHHHHHhcccHHH
Confidence 667778888888887888887777788888888888888888888888777 5777777776677777777777666
Q ss_pred HHHHHHHH----------------HhC--------------C--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175 242 ISQFETAV----------------KLQ--------------P--GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289 (316)
Q Consensus 242 ~~~~~~al----------------~~~--------------p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 289 (316)
+....... ... | ++++...+.|.+.++.|++++|++-|+.+++...-+
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 65532221 111 2 335566777777777777777777777777777766
Q ss_pred hhHHHHHHHHHhhCCCCCC
Q 021175 290 KVARPRRDALKDRVPLYKG 308 (316)
Q Consensus 290 ~~a~~~l~~l~~~~~~~~~ 308 (316)
+..-++++....+.+++.+
T Consensus 178 pllAYniALaHy~~~qyas 196 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQYAS 196 (459)
T ss_pred chhHHHHHHHHHhhhhHHH
Confidence 7777777766666666543
No 163
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=4.8e-07 Score=78.55 Aligned_cols=142 Identities=13% Similarity=0.045 Sum_probs=118.4
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc----------CCC------------Cc
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKW----------DGD------------DQ 219 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------~~~------------~p 219 (316)
..|+|++|...|.-+...+...++.+.+++.+++..|.|.+|...-.++-+.- -++ -.
T Consensus 69 hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~Lq 148 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ 148 (557)
T ss_pred hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHh
Confidence 78999999999999999888889999999999999999999998887765410 000 01
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175 220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL 299 (316)
Q Consensus 220 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l 299 (316)
+..+-...|+.+++..-.|++|++.|++.+.-+|+....-.+++.||.++.-++-+.+.+.--++..|+++.+....+..
T Consensus 149 D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn 228 (557)
T KOG3785|consen 149 DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACN 228 (557)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 12234455677778888999999999999999999999999999999999999999999999999999999998877665
Q ss_pred HhhC
Q 021175 300 KDRV 303 (316)
Q Consensus 300 ~~~~ 303 (316)
..++
T Consensus 229 ~fRl 232 (557)
T KOG3785|consen 229 LFRL 232 (557)
T ss_pred Hhhh
Confidence 5443
No 164
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.66 E-value=6e-06 Score=84.08 Aligned_cols=146 Identities=11% Similarity=0.041 Sum_probs=87.6
Q ss_pred HhhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 162 VRRELDLSAKELQEQVRSGD-ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
+.|++++|.+.|++..+.+- .+...|..+...+.+.|++++|.+.+++..+......|+ ...|..+-..|.+.|++++
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDR 597 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHH
Confidence 56666666666666654331 235556666666666666666666666665421112333 3455566666667777777
Q ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHhhCCCCCCC
Q 021175 241 GISQFETAVKLQ-PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF--DPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 241 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
|.+.|++..+.+ +.+...|..+...|.+.|++++|.+.|++..+. .|+ ...+..+...+.+.|++++|
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHH
Confidence 777777666655 345566666667777777777777777766654 343 44555666666666666544
No 165
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.65 E-value=6.4e-06 Score=72.62 Aligned_cols=152 Identities=16% Similarity=0.097 Sum_probs=122.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC----------------------
Q 021175 158 RQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD---------------------- 215 (316)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---------------------- 215 (316)
+..+.+|+++.|.....++.+..|.++.+......+|...|+|++......+..+.--
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 3355899999999999999999999999999999999999999999888877655210
Q ss_pred ----------------CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------
Q 021175 216 ----------------GDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL---------------------------- 251 (316)
Q Consensus 216 ----------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------------------- 251 (316)
..-..++..-..++.-+...|++++|.+..+++++.
T Consensus 241 ~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHH
Confidence 001123445555666677889999998887777754
Q ss_pred ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCC
Q 021175 252 ---QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVP 310 (316)
Q Consensus 252 ---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~ 310 (316)
.|+++..+..||..+.+.+.+.+|..+++.+++..|+ ...+..++.+..++|+.++|+
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHH
Confidence 3667889999999999999999999999999998875 556778899999999887664
No 166
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.64 E-value=6.2e-07 Score=83.21 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=116.1
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
..|+-++|....+.+++.++....+|..+|.++...++|++|+++|+.|+. ..|++...+..++....++++++..
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~----~~~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK----IEKDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHHHhhhhH
Confidence 678999999999999999999999999999999999999999999999999 7999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 021175 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFD 286 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 286 (316)
.+.-.+.+++.|..-..|...+..+.-.|++..|....+...+..
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999888877665
No 167
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.64 E-value=3e-06 Score=63.33 Aligned_cols=94 Identities=18% Similarity=0.169 Sum_probs=84.5
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
..|+.+.|++.|.+++...|..+.+|+|.+..+.-+|+.++|++-+++++++...-......++...|.+|..+|+-+.|
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 78999999999999999999999999999999999999999999999999974432334567889999999999999999
Q ss_pred HHHHHHHHHhCCCc
Q 021175 242 ISQFETAVKLQPGY 255 (316)
Q Consensus 242 ~~~~~~al~~~p~~ 255 (316)
...|+.|-++....
T Consensus 135 R~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 135 RADFEAAAQLGSKF 148 (175)
T ss_pred HHhHHHHHHhCCHH
Confidence 99999998876654
No 168
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.63 E-value=7e-06 Score=83.59 Aligned_cols=144 Identities=16% Similarity=0.079 Sum_probs=93.4
Q ss_pred HhhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 162 VRRELDLSAKELQEQVRSG-DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|.+.|++..+. ...|+ ...|..+...|.+.|++++
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~--Gv~PD-~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK--GVKPD-EVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC-HHHHHHHHHHHHhCCCHHH
Confidence 5666666666666666654 345566666666666667777777776666652 01333 4566666677777777777
Q ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHhhCCCCCCC
Q 021175 241 GISQFETAVKLQ-PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF--DPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 241 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
|.+.+++..+.. +-+...+..+..+|.+.|+.++|.+.|++..+. .| +...|..+...+.+.|+.++|
T Consensus 668 A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKA 738 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 777777776654 234667777777777777777777777776543 34 345667777777777776655
No 169
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.63 E-value=1.4e-06 Score=86.14 Aligned_cols=144 Identities=15% Similarity=0.098 Sum_probs=113.6
Q ss_pred HhhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 162 VRRELDLSAKELQEQVRSGD-ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
..|+.++|++.|++..+.+. .+...+..+-..+.+.|+.++|.++|+...+... ..| +...|..+...+.+.|+.++
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g-~~p-~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR-IKP-RAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC-CCC-CccchHhHHHHHHhcCCHHH
Confidence 77888888888888776432 3456677777888888888888888888776211 223 34567778888999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
|.+.+++. ...| +...|..+...+...|+.+.|...+++.++++|++...+..+..++.+.|++++|
T Consensus 481 A~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 481 AYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 99988764 2233 4567888888999999999999999999999999999999999999999999766
No 170
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.61 E-value=4.2e-07 Score=71.92 Aligned_cols=97 Identities=26% Similarity=0.312 Sum_probs=73.0
Q ss_pred ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 021175 199 FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE----------GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEK 268 (316)
Q Consensus 199 ~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 268 (316)
-|+.|.+.++.... .+|.+++.+++-|.++..+ .-+++|+.-|++|+.++|+..++++++|.+|..
T Consensus 6 ~FE~ark~aea~y~----~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 6 FFEHARKKAEAAYA----KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH----H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 03567788888777 5888899888888777644 569999999999999999999999999998887
Q ss_pred cCC-----------HHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175 269 KKD-----------LKSALKAFEEVLLFDPNNKVARPRRDAL 299 (316)
Q Consensus 269 ~g~-----------~~~A~~~~~~al~~~p~~~~a~~~l~~l 299 (316)
++. +++|..+|+++.+.+|++...+..|...
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 654 6788999999999999988777777543
No 171
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.61 E-value=2.5e-07 Score=79.91 Aligned_cols=101 Identities=12% Similarity=0.057 Sum_probs=93.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175 157 IRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG 236 (316)
Q Consensus 157 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g 236 (316)
++.++.+|.|++|+.+|.+++..+|.++..+.|.+.+|++.++|..|+.-...|+. ++.....+|...|.+...+|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia----Ld~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA----LDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH----hhHHHHHHHHHHHHHHHHHh
Confidence 44566999999999999999999999999999999999999999999999999999 68899999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHH
Q 021175 237 KLDKGISQFETAVKLQPGYVTAWNN 261 (316)
Q Consensus 237 ~~~~A~~~~~~al~~~p~~~~~~~~ 261 (316)
+..+|.+.++.++++.|++.+..-.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~ 204 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKS 204 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHH
Confidence 9999999999999999997554433
No 172
>PLN03077 Protein ECB2; Provisional
Probab=98.58 E-value=2.7e-06 Score=86.00 Aligned_cols=145 Identities=16% Similarity=0.195 Sum_probs=116.8
Q ss_pred HhhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 162 VRRELDLSAKELQEQVRSGD-ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
..|+.++|++.|++..+.+. .+...+..+-..+.+.|+.++|.++|+...+... ..|+ ...|..+...+.+.|+.++
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g-i~P~-~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS-ITPN-LKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC-CCCc-hHHHHHHHHHHHhCCCHHH
Confidence 78899999999998877432 2344566666778889999999999998885322 3443 4678889999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCCC
Q 021175 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGVP 310 (316)
Q Consensus 241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A~ 310 (316)
|.+.+++. ...|+ +..|..+-..+...|+.+.+....++.++++|++...+..+..++...|+|++|.
T Consensus 644 A~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 644 AYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence 99999875 34554 5667777667788899999999999999999999999999999999999998763
No 173
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.5e-07 Score=77.42 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=61.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 021175 190 LGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKK 269 (316)
Q Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 269 (316)
-|+.++...+|+.|+.+|.+++. .+|..+.+|.|.+.+|++.++++...+..++|++++|+....++.+|.+....
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~----~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAIC----INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred ccccccchhhhchHHHHHHHHHh----cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence 34455555666666666666666 56666666666666666666676666666677777776666666677666666
Q ss_pred CCHHHHHHHHHHHHh
Q 021175 270 KDLKSALKAFEEVLL 284 (316)
Q Consensus 270 g~~~~A~~~~~~al~ 284 (316)
..+++|+..++++..
T Consensus 92 ~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYS 106 (284)
T ss_pred ccccHHHHHHHHHHH
Confidence 666666666666643
No 174
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=5e-07 Score=73.39 Aligned_cols=106 Identities=25% Similarity=0.310 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 021175 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNL 262 (316)
Q Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 262 (316)
.+..++..|..|-..|-++-|.--|.+++. +.|+.+.+++.+|..+...|+|+.|.+.|...++++|.+.-++.|.
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLa----i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALA----IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhh----cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 456788889999999999999999999999 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175 263 GDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292 (316)
Q Consensus 263 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a 292 (316)
|..++.-|+++-|.+.+.+.-+-+|++|--
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCChHH
Confidence 999999999999999999999999998743
No 175
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.55 E-value=4.4e-06 Score=82.54 Aligned_cols=141 Identities=10% Similarity=-0.003 Sum_probs=105.5
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD 239 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~ 239 (316)
+.+.|++++|.+.|++. .+.+..+|..+...|.+.|++++|.+.|++..+.. ..| +...+..+..++.+.|+++
T Consensus 269 y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g--~~p-d~~t~~~ll~a~~~~g~~~ 342 (697)
T PLN03081 269 YSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG--VSI-DQFTFSIMIRIFSRLALLE 342 (697)
T ss_pred HHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCC-CHHHHHHHHHHHHhccchH
Confidence 44788899999988865 34567789999999999999999999998887621 233 3457777888888888888
Q ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 240 KGISQFETAVKLQ-PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 240 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
+|.+.+++.++.. +.+...+..+...|.+.|+.++|.+.|++..+ .+...|..+...+.+.|+.++|
T Consensus 343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHH
Confidence 8888888888765 45667777788888888888888888877643 2456677777777777766554
No 176
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.53 E-value=6.9e-06 Score=77.23 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=109.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 021175 155 FVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR 234 (316)
Q Consensus 155 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~ 234 (316)
+..+-+...|++++|+++.+++++..|..++.++..|.++.+.|++++|.+..+.|-. +++.+-..-...+..+.+
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~----LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE----LDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----CChhhHHHHHHHHHHHHH
Confidence 3344455899999999999999999999999999999999999999999999999999 798888888888999999
Q ss_pred cCCHHHHHHHHHHHHHhCC--Cc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 235 EGKLDKGISQFETAVKLQP--GY-------VTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 235 ~g~~~~A~~~~~~al~~~p--~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
.|+.++|.+.+..-.+.+- .. ......-|.+|.+.|++..|++.|..+.+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999988766552 11 223346789999999999999999888765
No 177
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.52 E-value=1.1e-06 Score=77.63 Aligned_cols=150 Identities=15% Similarity=0.080 Sum_probs=118.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC--CccHHHHHHHHH
Q 021175 158 RQVLVRRELDLSAKELQEQVRSGDAS------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD--DQDLAQVYNALG 229 (316)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~p~~~~~~~~lg 229 (316)
+.++-.|+++.|+..-+.-+.+.... -.++.|+|+++.-.|+++.|+++|++.+.+.-++ ....+...|.||
T Consensus 203 NTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLg 282 (639)
T KOG1130|consen 203 NTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLG 282 (639)
T ss_pred ceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhh
Confidence 44457899999999888877765432 3589999999999999999999999988754332 234567788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CC-ChhHHHHHH
Q 021175 230 VSYVREGKLDKGISQFETAVKLQP------GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFD-----PN-NKVARPRRD 297 (316)
Q Consensus 230 ~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~a~~~l~ 297 (316)
..|.-.+++++||.++++-+.+.. ....++..||..|-..|..++|+.+.++.+++. |. ...+..++.
T Consensus 283 Ntytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nls 362 (639)
T KOG1130|consen 283 NTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLS 362 (639)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhH
Confidence 999999999999999999887653 336788999999999999999999888877653 22 344667777
Q ss_pred HHHhhCCCCC
Q 021175 298 ALKDRVPLYK 307 (316)
Q Consensus 298 ~l~~~~~~~~ 307 (316)
.+...+|.-+
T Consensus 363 dl~~~lG~~d 372 (639)
T KOG1130|consen 363 DLILELGQED 372 (639)
T ss_pred HHHHHhCCCc
Confidence 7777777554
No 178
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.7e-06 Score=70.37 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC----CCc----------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021175 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG----DDQ----------DLAQVYNALGVSYVREGKLDKGISQFETAV 249 (316)
Q Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 249 (316)
..+...-|+-++..|+|.+|...|+.|+..... -.| .....+.|.+.|+...|+|-++++...+.+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999875421 122 345678899999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 021175 250 KLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARP 294 (316)
Q Consensus 250 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 294 (316)
+.+|++..+++..|.++...=+.++|...+.++++++|.-..+..
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 999999999999999999999999999999999999998665543
No 179
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.46 E-value=2.9e-05 Score=63.87 Aligned_cols=139 Identities=24% Similarity=0.245 Sum_probs=111.2
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHHHHHHcCC
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGA-VMLRRKFYPAATKYLLQAIEKWDGDDQ---DLAQVYNALGVSYVREGK 237 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~p---~~~~~~~~lg~~~~~~g~ 237 (316)
..+++.++++.+.++....+.........+. ++...|++++|...+++++. ..| .........+..+...++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 182 (291)
T COG0457 107 ALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE----LDPELNELAEALLALGALLEALGR 182 (291)
T ss_pred HHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCccchHHHHHHhhhHHHHhcC
Confidence 6667888889999888887776665666666 88899999999999999977 455 566677777777888899
Q ss_pred HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175 238 LDKGISQFETAVKLQPG-YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP 304 (316)
Q Consensus 238 ~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~ 304 (316)
+++|+..+.+++...+. ....+..++..+...+++++|...+.+++...|+........+..+...+
T Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELG 250 (291)
T ss_pred HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence 99999999999999888 68888999999999999999999999999988875555555555555433
No 180
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.46 E-value=2.7e-07 Score=83.18 Aligned_cols=120 Identities=21% Similarity=0.273 Sum_probs=97.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 021175 188 FELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYE 267 (316)
Q Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 267 (316)
-+-++..+..++|+.|+..|.|+++ ++|+.+..+-+.+.++.+.+++..|+..+.+|++.+|....+|+..|.+..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~----ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIE----LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHh----cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 3455666777888888888888888 688888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC--CCCCCC
Q 021175 268 KKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPL--YKGVPV 311 (316)
Q Consensus 268 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~--~~~A~~ 311 (316)
..+++.+|...|++...+.|+++.+...+..+...... ++.+..
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~ 129 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAIL 129 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhccc
Confidence 88888888888888888888888888888777665554 344433
No 181
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=2.6e-05 Score=72.08 Aligned_cols=130 Identities=13% Similarity=0.126 Sum_probs=105.8
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------------------------
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD------------------------ 215 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------------------ 215 (316)
.++.+..++|+..++ ..++.+.......|.++++.|+|++|.+.|+..++...
T Consensus 89 ~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q 165 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ 165 (652)
T ss_pred HHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence 347889999999888 56666777888999999999999999999998865210
Q ss_pred --CCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCc-------HHHHHHHHHHHHHcCCHHHHHH
Q 021175 216 --GDDQ-DLAQVYNALGVSYVREGKLDKGISQFETAVKLQ--------PGY-------VTAWNNLGDAYEKKKDLKSALK 277 (316)
Q Consensus 216 --~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~-------~~~~~~lg~~~~~~g~~~~A~~ 277 (316)
...| ++.+.++|.+.++...|+|.+|++.+++|+++. .+. ..+...++.++..+|+.++|..
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 0233 367789999999999999999999999995431 111 3577889999999999999999
Q ss_pred HHHHHHhcCCCChhH
Q 021175 278 AFEEVLLFDPNNKVA 292 (316)
Q Consensus 278 ~~~~al~~~p~~~~a 292 (316)
.|...++.+|.+...
T Consensus 246 iy~~~i~~~~~D~~~ 260 (652)
T KOG2376|consen 246 IYVDIIKRNPADEPS 260 (652)
T ss_pred HHHHHHHhcCCCchH
Confidence 999999999877643
No 182
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.45 E-value=2.2e-07 Score=82.01 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=112.1
Q ss_pred hhHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC--CccHHHHHHHHHHHHHHc
Q 021175 164 RELDLSAKELQEQVRSGDA------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD--DQDLAQVYNALGVSYVRE 235 (316)
Q Consensus 164 ~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~p~~~~~~~~lg~~~~~~ 235 (316)
..++.|.+.|++-++.... ...++-++|+.|+-.|+|++|+.+-+.=+++..+. ....-.++.|+|.++.-+
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 3456677777776664332 34578899999999999999999988777754331 223456899999999999
Q ss_pred CCHHHHHHHHHHHHHhC----CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHhhC
Q 021175 236 GKLDKGISQFETAVKLQ----PG--YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP------NNKVARPRRDALKDRV 303 (316)
Q Consensus 236 g~~~~A~~~~~~al~~~----p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~l~~l~~~~ 303 (316)
|+++.|+++|++++.+. .. .++..|.||..|.-..++++|+.+.++-+.+.. ....+.+.++..+..+
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999987653 22 367789999999999999999999998887643 3455677788888777
Q ss_pred CCCCCC
Q 021175 304 PLYKGV 309 (316)
Q Consensus 304 ~~~~~A 309 (316)
|..++|
T Consensus 329 g~h~kA 334 (639)
T KOG1130|consen 329 GEHRKA 334 (639)
T ss_pred hhHHHH
Confidence 766544
No 183
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=8e-05 Score=62.54 Aligned_cols=128 Identities=19% Similarity=0.165 Sum_probs=112.7
Q ss_pred HhhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHHHHHHcCCH
Q 021175 162 VRRELDLSAKELQEQVRSG-DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD--QDLAQVYNALGVSYVREGKL 238 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--p~~~~~~~~lg~~~~~~g~~ 238 (316)
-.++|.-....+.+.++.+ |.++.....+|.+.++.||-+.|..++++.-+....++ .....+..+.+.+|.-.+++
T Consensus 189 G~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~ 268 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNF 268 (366)
T ss_pred cchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccch
Confidence 5678888899999999988 57888999999999999999999999997665332222 34566778889999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175 239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289 (316)
Q Consensus 239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 289 (316)
.+|...+.+.+..||.++.+-++.+.|....|+..+|++.++.+++..|..
T Consensus 269 a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 269 AEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999999999999999999999999999999999999974
No 184
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.42 E-value=6.8e-07 Score=54.71 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 021175 224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGD 264 (316)
Q Consensus 224 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 264 (316)
++..+|..|...|++++|++.|+++++.+|+++.++..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45555555666666666666666666666666555555543
No 185
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.38 E-value=0.00013 Score=64.56 Aligned_cols=123 Identities=13% Similarity=0.120 Sum_probs=109.0
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
..|+|.+|++...+.-+-.+...-++..-+.+..++||++.|-.++.++-+. .+.+.-......+......|+++.|
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~---~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL---AGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHhCCCchhH
Confidence 7899999999999988888887888888889999999999999999999983 1234556777889999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 287 (316)
..-..++++..|.++.+....-.+|...|++++......+.-+..-
T Consensus 173 ~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~ 218 (400)
T COG3071 173 RENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGL 218 (400)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999988887766543
No 186
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=1.1e-05 Score=74.41 Aligned_cols=124 Identities=10% Similarity=0.038 Sum_probs=102.0
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
.++++++|.+...+.+...|++.++....-.+..+.++|++|....++-.. ...+....+..+.|.+++++.++|
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~-----~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA-----LLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch-----hhhcchhhHHHHHHHHHcccHHHH
Confidence 789999999999999999999999999999999999999999854443322 111222226889999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 021175 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 293 (316)
++.++ -.++.+.......|++++++|+|++|.+.|+..++-+.++.+..
T Consensus 99 lk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~ 147 (652)
T KOG2376|consen 99 LKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEE 147 (652)
T ss_pred HHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHH
Confidence 99998 55677777888999999999999999999999987766554443
No 187
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=3.7e-06 Score=73.16 Aligned_cols=143 Identities=14% Similarity=0.084 Sum_probs=111.3
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDASA-TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD 239 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~ 239 (316)
+.+.||..|+..++-....+.+.. +.-.-+|.+++..|+|++|...|.-+.+ .+.-+++.+.+|+.+++..|.|.
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~----~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN----KDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc----cCCCCcccchhHHHHHHHHHHHH
Confidence 368899999999988776665443 5566688999999999999999999988 35556889999999999999999
Q ss_pred HHHHHHHHHHH--------------hCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 021175 240 KGISQFETAVK--------------LQPG------------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293 (316)
Q Consensus 240 ~A~~~~~~al~--------------~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 293 (316)
+|...-.++-+ ++.. ..+-...|+.+++..-.|++|++.|++++.-+|+....-
T Consensus 109 eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN 188 (557)
T KOG3785|consen 109 EAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN 188 (557)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence 99987655421 2211 122334566677777789999999999999999988887
Q ss_pred HHHHHHHhhCCCCC
Q 021175 294 PRRDALKDRVPLYK 307 (316)
Q Consensus 294 ~~l~~l~~~~~~~~ 307 (316)
..++.++.++.-++
T Consensus 189 Vy~ALCyyKlDYyd 202 (557)
T KOG3785|consen 189 VYMALCYYKLDYYD 202 (557)
T ss_pred HHHHHHHHhcchhh
Confidence 78888887776553
No 188
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.36 E-value=3.8e-05 Score=78.18 Aligned_cols=149 Identities=10% Similarity=-0.089 Sum_probs=115.1
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDAS-----ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQD--LAQVYNALGVSYV 233 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~--~~~~~~~lg~~~~ 233 (316)
...|++++|...++++++..+.. ..+...+|.++...|++++|...++++++......+. ...++.++|.++.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 47899999999999998855432 2466788999999999999999999999864432222 2456788999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ChhHHHHHHHHH
Q 021175 234 REGKLDKGISQFETAVKLQPG--------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN-----NKVARPRRDALK 300 (316)
Q Consensus 234 ~~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~l~~l~ 300 (316)
..|++++|.+.++++++.... ....+..+|.++...|++++|...+++++..... ....+..++.+.
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999999999986321 2344667899999999999999999999876332 234455677788
Q ss_pred hhCCCCCCC
Q 021175 301 DRVPLYKGV 309 (316)
Q Consensus 301 ~~~~~~~~A 309 (316)
...|++++|
T Consensus 623 ~~~G~~~~A 631 (903)
T PRK04841 623 LARGDLDNA 631 (903)
T ss_pred HHcCCHHHH
Confidence 888877654
No 189
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.36 E-value=3.9e-05 Score=63.04 Aligned_cols=143 Identities=21% Similarity=0.253 Sum_probs=122.6
Q ss_pred HHhhhHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHH-HHHHcCC
Q 021175 161 LVRRELDLSAKELQEQVR--SGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGV-SYVREGK 237 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~-~~~~~g~ 237 (316)
...+++..+...+..... ..+.....+...+..+...++++++++.+.+++. ..+.........+. ++...|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 145 (291)
T COG0457 70 LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA----LDPDPDLAEALLALGALYELGD 145 (291)
T ss_pred HHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc----CCCCcchHHHHHHHHHHHHcCC
Confidence 377888899999998887 7888899999999999999999999999999998 45555455555555 8999999
Q ss_pred HHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHhhCCCCC
Q 021175 238 LDKGISQFETAVKLQP---GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN-NKVARPRRDALKDRVPLYK 307 (316)
Q Consensus 238 ~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~l~~l~~~~~~~~ 307 (316)
+++|...+++++..+| .........+..+...+++++|+..+.+++...+. .......++..+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 146 YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 9999999999999877 45677778888889999999999999999999999 6888888888887776543
No 190
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.35 E-value=9.4e-07 Score=54.07 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 021175 256 VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDA 298 (316)
Q Consensus 256 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~ 298 (316)
+.++..+|.+|..+|++++|++.|+++++.+|++++++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578999999999999999999999999999999999999875
No 191
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.32 E-value=6.7e-07 Score=51.30 Aligned_cols=32 Identities=31% Similarity=0.641 Sum_probs=24.4
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 021175 245 FETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL 276 (316)
Q Consensus 245 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 276 (316)
|++|++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67777777777777777777777777777775
No 192
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.29 E-value=3.4e-05 Score=72.28 Aligned_cols=126 Identities=16% Similarity=-0.004 Sum_probs=105.0
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
...+.+.+.+.+++..+..|+.+-..+..|.++...|+.++|++.|++++..-.+..+-..-+++.+|.++..+++|++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 35677899999999999999999999999999999999999999999988622212334456788999999999999999
Q ss_pred HHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhcCC
Q 021175 242 ISQFETAVKLQPGY-VTAWNNLGDAYEKKKDL-------KSALKAFEEVLLFDP 287 (316)
Q Consensus 242 ~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~p 287 (316)
.+++.+..+.+.-. +-..|..|.|+...|+. ++|.+.++++-.+..
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 99999999976543 44556778899999999 888888888776543
No 193
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=9.5e-06 Score=69.99 Aligned_cols=105 Identities=21% Similarity=0.241 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 021175 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ-DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNL 262 (316)
Q Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 262 (316)
+.-+-.-|+-|++.++|..|+..|.++++.--. +| -++..|.|.+.+.+..|+|..|+....+++.++|.+..+++.-
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~-D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCA-DPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCC-CccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 556777899999999999999999999985322 34 4678899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175 263 GDAYEKKKDLKSALKAFEEVLLFDPNN 289 (316)
Q Consensus 263 g~~~~~~g~~~~A~~~~~~al~~~p~~ 289 (316)
+.|+..+.++++|..+.++.++++.+.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999999999999999888888776543
No 194
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=3.8e-06 Score=69.22 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=82.9
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
+....|+.|+..|.+++.++|..+..+.+.+.++++.++++.+...-+++++ +.|+....++.+|........|++
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq----l~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ----LDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh----cChHHHHHHHHHHHHHHhhccccH
Confidence 3567899999999999999999999999999999999999999999999999 799999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 021175 241 GISQFETAVKL 251 (316)
Q Consensus 241 A~~~~~~al~~ 251 (316)
|+..+++|..+
T Consensus 97 aI~~Lqra~sl 107 (284)
T KOG4642|consen 97 AIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999999765
No 195
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.24 E-value=2.8e-06 Score=48.75 Aligned_cols=32 Identities=25% Similarity=0.640 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 021175 223 QVYNALGVSYVREGKLDKGISQFETAVKLQPG 254 (316)
Q Consensus 223 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 254 (316)
.+|+++|.++..+|++++|++.|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 196
>PLN03077 Protein ECB2; Provisional
Probab=98.22 E-value=6.7e-05 Score=76.01 Aligned_cols=118 Identities=11% Similarity=0.056 Sum_probs=100.8
Q ss_pred HhhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175 162 VRRELDLSAKELQEQVRSGD--ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD 239 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~ 239 (316)
..|+++++.+.|++..+..+ .+...|..+...+.+.|++++|.+.+++. . ..|+ +..|..+-..+...|+.+
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~----~~pd-~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-P----ITPD-PAVWGALLNACRIHRHVE 674 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-C----CCCC-HHHHHHHHHHHHHcCChH
Confidence 78999999999999885433 34578999999999999999999998875 2 3555 556666666778899999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
.|....++.++++|++...|..++.+|...|++++|.+..+...+.
T Consensus 675 ~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 675 LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998877643
No 197
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.22 E-value=8e-05 Score=75.89 Aligned_cols=127 Identities=10% Similarity=0.063 Sum_probs=102.1
Q ss_pred HHhhhHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC----ccHHHHHHHHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDA------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD----QDLAQVYNALGV 230 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----p~~~~~~~~lg~ 230 (316)
...|++++|...+++++..... ...++.++|.++...|++++|..+++++++...... +.....+..+|.
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 4799999999999999875332 134677899999999999999999999998644311 223445678899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175 231 SYVREGKLDKGISQFETAVKLQPG-----YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287 (316)
Q Consensus 231 ~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 287 (316)
++...|++++|.+.+++++..... ...++..+|.++...|++++|...++++..+.+
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999886432 355677799999999999999999999977643
No 198
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.21 E-value=8e-05 Score=67.90 Aligned_cols=140 Identities=17% Similarity=0.154 Sum_probs=107.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC----------CCc-------c-
Q 021175 159 QVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG----------DDQ-------D- 220 (316)
Q Consensus 159 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----------~~p-------~- 220 (316)
+..+..+.+.-++..++|++++|+.+++|..|+.- ......+|+++|+++++..+. ..+ .
T Consensus 177 ~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rd 254 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRD 254 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccc
Confidence 34478889999999999999999999999988763 234467888888888874321 000 0
Q ss_pred ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChhHHH
Q 021175 221 ---LAQVYNALGVSYVREGKLDKGISQFETAVKLQPG--YVTAWNNLGDAYEKKKDLKSALKAFEEVLLF-DPNNKVARP 294 (316)
Q Consensus 221 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~ 294 (316)
...+...+|.+..+.|+.+||++.+++.++.+|. +..++.+|-.++..++++.++...+.+-=++ -|+.+...+
T Consensus 255 t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~Y 334 (539)
T PF04184_consen 255 TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICY 334 (539)
T ss_pred cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHH
Confidence 1345577999999999999999999999998875 4679999999999999999999988886433 255555555
Q ss_pred HHHHHH
Q 021175 295 RRDALK 300 (316)
Q Consensus 295 ~l~~l~ 300 (316)
.-+.+.
T Consensus 335 TaALLk 340 (539)
T PF04184_consen 335 TAALLK 340 (539)
T ss_pred HHHHHH
Confidence 545444
No 199
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.21 E-value=0.00023 Score=57.26 Aligned_cols=115 Identities=19% Similarity=0.161 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccH----HHHHHHHHHHHHHcCCHHH
Q 021175 168 LSAKELQEQVRSGDAS---ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDL----AQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 168 ~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~----~~~~~~lg~~~~~~g~~~~ 240 (316)
+.+...++....+|.. ..+-..++..+...|++++|+..++.++. .|.+ +-+-.+|+.+...+|++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~-----~t~De~lk~l~~lRLArvq~q~~k~D~ 144 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA-----QTKDENLKALAALRLARVQLQQKKADA 144 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc-----cchhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4445555555566544 33566788889999999999999999997 3433 4466789999999999999
Q ss_pred HHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175 241 GISQFETAVKLQPGY-VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289 (316)
Q Consensus 241 A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 289 (316)
|...+..... ++. +..-...|.++...|+.++|+..|+++++.+++.
T Consensus 145 AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 145 ALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 9998865432 222 2334567999999999999999999999987543
No 200
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=2.8e-05 Score=66.35 Aligned_cols=124 Identities=16% Similarity=0.140 Sum_probs=104.0
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------hc-----------
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIE----------------KW----------- 214 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----------------~~----------- 214 (316)
...++..|.++|++.-...|.........+..+++.+.+.+|+........ ..
T Consensus 56 ~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLv 135 (459)
T KOG4340|consen 56 RLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLV 135 (459)
T ss_pred HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHH
Confidence 778999999999999999999888888888888888888888766543222 11
Q ss_pred CCC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 215 DGD-DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 215 ~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
.+. ..+.+....+.|.+.++.|++++|++-|+.|++.....+-.-++++.++++.|+++.|+++..+.++.
T Consensus 136 eQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 136 EQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 011 23677888999999999999999999999999999999999999999999999999999887776654
No 201
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.18 E-value=7e-05 Score=62.94 Aligned_cols=109 Identities=22% Similarity=0.294 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HH
Q 021175 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV---TA 258 (316)
Q Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 258 (316)
..+..+++-|...++.|+|++|++.|++.....| ..|....+...++.++++.+++++|+...++-+++.|+++ -+
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHP-FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 3467899999999999999999999999998766 4677788999999999999999999999999999999874 56
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCChh
Q 021175 259 WNNLGDAYEKK--------KDLKSALKAFEEVLLFDPNNKV 291 (316)
Q Consensus 259 ~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~ 291 (316)
++..|.++... .-..+|...+++.++.-|++.-
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence 77888887642 2236888999999999998743
No 202
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.17 E-value=5.8e-06 Score=47.29 Aligned_cols=32 Identities=31% Similarity=0.638 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 021175 223 QVYNALGVSYVREGKLDKGISQFETAVKLQPG 254 (316)
Q Consensus 223 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 254 (316)
.+++.+|.+++.+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 203
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.15 E-value=0.00018 Score=62.95 Aligned_cols=129 Identities=12% Similarity=0.109 Sum_probs=106.0
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLR-RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
+.+..+.|...|+++.+..+.....|...|...+. .++.+.|...|+.+++ ..|.+...+......+...|+.+.
T Consensus 13 r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk----~f~~~~~~~~~Y~~~l~~~~d~~~ 88 (280)
T PF05843_consen 13 RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLK----KFPSDPDFWLEYLDFLIKLNDINN 88 (280)
T ss_dssp HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH----HHTT-HHHHHHHHHHHHHTT-HHH
T ss_pred HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHhCcHHH
Confidence 67779999999999997777788999999999777 5666669999999999 477888888888899999999999
Q ss_pred HHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 021175 241 GISQFETAVKLQPGYV---TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARP 294 (316)
Q Consensus 241 A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 294 (316)
|...|++++..-|... ..|......-...|+.+...+..+++.+.-|++.....
T Consensus 89 aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 89 ARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999999999877654 67778888888899999999999999999888554433
No 204
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.0005 Score=57.95 Aligned_cols=127 Identities=16% Similarity=0.151 Sum_probs=101.7
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLR----RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG 236 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g 236 (316)
++..+.+-|++.+++..+.+.+ .....|+.++.. .+++.+|.-+|++.-++ .|..+...+.++.+++.+|
T Consensus 148 lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k----~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK----TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc----cCCChHHHccHHHHHHHhc
Confidence 3777888899999888887654 345556665554 36789999999998883 6667888899999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCChhHH
Q 021175 237 KLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL-KAFEEVLLFDPNNKVAR 293 (316)
Q Consensus 237 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~a~ 293 (316)
+|++|...+++++..++++++.+.|+-.+-...|...++. +...+....+|+++-..
T Consensus 222 ~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 9999999999999999999999999999999999876655 45666666788776543
No 205
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.15 E-value=4e-06 Score=48.04 Aligned_cols=34 Identities=38% Similarity=0.653 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175 256 VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289 (316)
Q Consensus 256 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 289 (316)
+.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 206
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00021 Score=60.20 Aligned_cols=138 Identities=16% Similarity=0.081 Sum_probs=113.3
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cC
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR----EG 236 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~----~g 236 (316)
...+++++|.....+ -...++...--.++.+..+.+-|++..++..+ .+ +-.....|+.++.+ .+
T Consensus 119 ~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~----id--ed~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 119 MHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQ----ID--EDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred hcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cc--hHHHHHHHHHHHHHHhccch
Confidence 378899999887776 23445555666788889999999999988887 33 33455566666654 36
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 237 KLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 237 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
++.+|.-+|++--+..|..+......+.|...+|++++|...++.++..++++++...++-.+-..+|...++
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 7999999999999988889999999999999999999999999999999999999999999888888876433
No 207
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00033 Score=57.90 Aligned_cols=135 Identities=15% Similarity=0.129 Sum_probs=103.3
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHc-CChHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHH
Q 021175 160 VLVRRELDLSAKELQEQVRSGDAS------ATEYFELGAVMLRR-KFYPAATKYLLQAIEKWDGDD--QDLAQVYNALGV 230 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~--p~~~~~~~~lg~ 230 (316)
.++..+.++|+..+++++++..+. +.-+..+|.+|... .++++|+.+|+++-+.+.... ...-.++.-.+.
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 447789999999999999877654 34456889888876 899999999999998654311 122334455566
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 021175 231 SYVREGKLDKGISQFETAVKLQPGYV-------TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARP 294 (316)
Q Consensus 231 ~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 294 (316)
.-...++|.+|++.|++..+..-++. ...+.-|.|+....|.-.+...+++-.+++|...+.+.
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsRE 233 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRE 233 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHH
Confidence 66778999999999999987655442 34456788899889999999999999999998776653
No 208
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.11 E-value=0.00044 Score=69.86 Aligned_cols=177 Identities=14% Similarity=0.061 Sum_probs=99.6
Q ss_pred hccchHHHHHHHH-HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 021175 116 NASENVQMDAVYE-IGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVM 194 (316)
Q Consensus 116 ~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 194 (316)
.-++.+.|....+ +...++......-++...+++++-+.|. .-+.-.+.|+++.+... .-..|..|..+|
T Consensus 1470 elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG--------~eesl~kVFeRAcqycd-~~~V~~~L~~iy 1540 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG--------TEESLKKVFERACQYCD-AYTVHLKLLGIY 1540 (1710)
T ss_pred hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC--------cHHHHHHHHHHHHHhcc-hHHHHHHHHHHH
Confidence 3445566666554 2333433333344444445555443332 22334445555544432 233455666666
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCH
Q 021175 195 LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPG--YVTAWNNLGDAYEKKKDL 272 (316)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~ 272 (316)
...+++++|.++++.-++. ..+....|..+|..++++++-++|...+++|++.-|. +.+.....++..++.|+.
T Consensus 1541 ~k~ek~~~A~ell~~m~KK----F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKK----FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHhhcchhHHHHHHHHHHH----hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6666666666666666663 2245566666666666666666666666666666665 555555666666666666
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175 273 KSALKAFEEVLLFDPNNKVARPRRDALKDRVPL 305 (316)
Q Consensus 273 ~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~ 305 (316)
+.+...|+..+.-.|.-.+.|..+.....+.|+
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCC
Confidence 666666666666666666666666555555444
No 209
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.00032 Score=60.95 Aligned_cols=118 Identities=13% Similarity=0.010 Sum_probs=61.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHH
Q 021175 163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGI 242 (316)
Q Consensus 163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 242 (316)
+|+..+|....++.++..|.+.-++..--.+++..|+.+.-...+++.+..+...-|-.....-.++..+...|-|++|.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 44555555555555555555555555555555555555555555555554322223333334444455555555555555
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021175 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFE 280 (316)
Q Consensus 243 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 280 (316)
+.-++++++||.+..+....+-++...|++.++.+.+.
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 55555555555555555555555555555555544443
No 210
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.09 E-value=8.5e-06 Score=46.57 Aligned_cols=34 Identities=41% Similarity=0.725 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175 256 VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289 (316)
Q Consensus 256 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 289 (316)
+.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999985
No 211
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.09 E-value=6.1e-06 Score=74.61 Aligned_cols=106 Identities=18% Similarity=0.247 Sum_probs=98.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175 158 RQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK 237 (316)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~ 237 (316)
.+.+..++++.|+..|.++++++|+.+..+-+.+.++.+.+++..|+.-+.+|++ .+|....+|+..|.+....++
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie----~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIE----LDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhh----cCchhhheeeeccHHHHhHHH
Confidence 3345788999999999999999999999999999999999999999999999999 799999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 021175 238 LDKGISQFETAVKLQPGYVTAWNNLGDAYE 267 (316)
Q Consensus 238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 267 (316)
+.+|...|++...+.|+++.+...+-.|-.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999999999999998887776643
No 212
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=3.4e-05 Score=69.86 Aligned_cols=145 Identities=19% Similarity=0.145 Sum_probs=115.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCC--CCcc--HHHHHHHHHH
Q 021175 156 VIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEK-WDG--DDQD--LAQVYNALGV 230 (316)
Q Consensus 156 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~--~~p~--~~~~~~~lg~ 230 (316)
..+.++...+...+....+.++....+.+.+....++.++..|++.+|.+.+...--. .+. ..|. ....++|+|.
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 3344556777777888888888888899999999999999999999999887543211 010 2333 2345689999
Q ss_pred HHHHcCCHHHHHHHHHHHHHh---------CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 021175 231 SYVREGKLDKGISQFETAVKL---------QP---------GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA 292 (316)
Q Consensus 231 ~~~~~g~~~~A~~~~~~al~~---------~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 292 (316)
++++.|.|.-+..+|.+|++. .| ..-++.||.|..|...|+.-.|.++|.++.+..-.+|..
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrl 371 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRL 371 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHH
Confidence 999999999999999999961 12 125688999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 021175 293 RPRRDALK 300 (316)
Q Consensus 293 ~~~l~~l~ 300 (316)
|.+++.+-
T Consensus 372 WLRlAEcC 379 (696)
T KOG2471|consen 372 WLRLAECC 379 (696)
T ss_pred HHHHHHHH
Confidence 99998763
No 213
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.07 E-value=0.00027 Score=68.42 Aligned_cols=129 Identities=17% Similarity=0.056 Sum_probs=106.6
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
+.+++.+|.+...+.++..|+...+....|..+.+.|+.++|..+++..-. ..+++....-.+-.+|..+|++++|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~----~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYG----LKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhcc----CCCCchHHHHHHHHHHHHHhhhhHH
Confidence 788999999999999999999999999999999999999999977766655 5777888888899999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 021175 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR 295 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 295 (316)
...|+++++.+|+ -+..+.+=.+|.+.+.|.+-.+.--+.-+..|+++-....
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS 149 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence 9999999999999 7777777778887777754333333333466776655433
No 214
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.05 E-value=5.7e-06 Score=47.40 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=20.0
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCChHHHH
Q 021175 173 LQEQVRSGDASATEYFELGAVMLRRKFYPAAT 204 (316)
Q Consensus 173 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 204 (316)
|+++++.+|+++.+|+++|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566666666666666666666666666654
No 215
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.04 E-value=6.9e-05 Score=65.58 Aligned_cols=125 Identities=18% Similarity=0.191 Sum_probs=103.6
Q ss_pred HhhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC------ccHHHHHHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDAS------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD------QDLAQVYNALG 229 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------p~~~~~~~~lg 229 (316)
-.+.++++++.|+++++...+. -.++..+|..+...+|+++|.-+..+|.++..... .....+.+.++
T Consensus 134 gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhma 213 (518)
T KOG1941|consen 134 GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMA 213 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHH
Confidence 6778899999999999865433 35788999999999999999999999999754322 12355678899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 021175 230 VSYVREGKLDKGISQFETAVKLQ------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFD 286 (316)
Q Consensus 230 ~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 286 (316)
..+..+|+.-.|.++.+++.++. +-.+....-+|.+|...|+.+.|..-|+.+....
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 99999999999999999999864 2346677789999999999999999999998754
No 216
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=0.0015 Score=59.32 Aligned_cols=175 Identities=14% Similarity=0.155 Sum_probs=100.5
Q ss_pred hhhhhHHHHHHHH-hhccchHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHc
Q 021175 102 SFGSSSWLISARV-ANASENVQMDAVYEIG-ELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRS 179 (316)
Q Consensus 102 ~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 179 (316)
+....+|....+. ..-|+.++..+.|+.+ ...+|....- .---++.+-..|..-..+...+.+.+.+.|+.++++
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr---~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKR---YWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3345677777776 5557888888888633 3333332211 111222222223333456778889999999999998
Q ss_pred CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 021175 180 GDAS----ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY 255 (316)
Q Consensus 180 ~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 255 (316)
-|+. +..|...+....++.+.+.|.+.+..|+-++ |.+-. .-..-.+-.+++++|.....|++-+...|.+
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c----PK~Kl-Fk~YIelElqL~efDRcRkLYEkfle~~Pe~ 470 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC----PKDKL-FKGYIELELQLREFDRCRKLYEKFLEFSPEN 470 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC----CchhH-HHHHHHHHHHHhhHHHHHHHHHHHHhcChHh
Confidence 8864 5677777777777777777777777777643 22111 1111112234455555555555555555555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 021175 256 VTAWNNLGDAYEKKKDLKSALKAFEEVLL 284 (316)
Q Consensus 256 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 284 (316)
-.+|...|..-..+|+.+.|...|+-|+.
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 55555555555555555555555555544
No 217
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.02 E-value=0.0025 Score=51.43 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHH
Q 021175 224 VYNALGVSYVREGKLDKGISQFETAVKLQPGY---VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN-KVARPRRDAL 299 (316)
Q Consensus 224 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~l~~l 299 (316)
+-..++..+...|++++|+..++.++....+. .-+-.+|+.+...+|++|+|+..+..... ++. +..-...|.+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDi 168 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhH
Confidence 33456666677777777777777666532221 33445667777777777777666654322 111 1223334555
Q ss_pred HhhCCCCC
Q 021175 300 KDRVPLYK 307 (316)
Q Consensus 300 ~~~~~~~~ 307 (316)
....|+-+
T Consensus 169 ll~kg~k~ 176 (207)
T COG2976 169 LLAKGDKQ 176 (207)
T ss_pred HHHcCchH
Confidence 55555544
No 218
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.02 E-value=0.00057 Score=69.11 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=131.0
Q ss_pred hccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 021175 116 NASENVQMDAVYEIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVML 195 (316)
Q Consensus 116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 195 (316)
..+.+++....|+.+..+..... .+..+.-.|. ..+.+++|.+.++..++...+....|..+|..++
T Consensus 1509 ~yG~eesl~kVFeRAcqycd~~~--------V~~~L~~iy~-----k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1509 AYGTEESLKKVFERACQYCDAYT--------VHLKLLGIYE-----KSEKNDEADELLRLMLKKFGQTRKVWIMYADFLL 1575 (1710)
T ss_pred hhCcHHHHHHHHHHHHHhcchHH--------HHHHHHHHHH-----HhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 34556665667776655555443 2333333343 7889999999999999998899999999999999
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 021175 196 RRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSA 275 (316)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 275 (316)
.+.+-+.|...+++|++..|+ .++.+....-+.+-++.|+.+.+...|+..+.-+|.-.+.|.-+...-.+.|+.+..
T Consensus 1576 ~~ne~~aa~~lL~rAL~~lPk--~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~v 1653 (1710)
T KOG1070|consen 1576 RQNEAEAARELLKRALKSLPK--QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYV 1653 (1710)
T ss_pred cccHHHHHHHHHHHHHhhcch--hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHH
Confidence 999999999999999995332 347778888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 021175 276 LKAFEEVLLFDPN 288 (316)
Q Consensus 276 ~~~~~~al~~~p~ 288 (316)
...|++++.+.=.
T Consensus 1654 R~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1654 RDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHhcCCC
Confidence 9999999987533
No 219
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.01 E-value=0.00012 Score=57.26 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 222 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
..+...++..+...|++++|+..+++++..+|.+..++..+-.+|...|+..+|++.|++..+.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4466678888999999999999999999999999999999999999999999999999988643
No 220
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00056 Score=58.62 Aligned_cols=143 Identities=15% Similarity=0.103 Sum_probs=106.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHH--HHHHHc
Q 021175 158 RQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALG--VSYVRE 235 (316)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg--~~~~~~ 235 (316)
.+....+++.++...++.++...|+..++...++.++...|+.++|...+...-. .... ....-..+ ..+.+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~----~~~~-~~~~~l~a~i~ll~qa 216 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPL----QAQD-KAAHGLQAQIELLEQA 216 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcc----cchh-hHHHHHHHHHHHHHHH
Confidence 3455899999999999999999999999999999999999999999888765433 1111 11111111 222222
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHhhCCCC
Q 021175 236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN--NKVARPRRDALKDRVPLY 306 (316)
Q Consensus 236 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~l~~l~~~~~~~ 306 (316)
....+ ...+++.+..+|++.++.+.++..+...|+.++|.+.+-..++.+.+ +..++..+-.+....|.-
T Consensus 217 a~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 217 AATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred hcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 22222 23456677889999999999999999999999999999999887654 567777777777777643
No 221
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.88 E-value=0.00029 Score=61.84 Aligned_cols=148 Identities=13% Similarity=0.053 Sum_probs=111.5
Q ss_pred HhhhHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-Cc-cHHHHHHHHHHHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDA-----SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGD-DQ-DLAQVYNALGVSYVR 234 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~p-~~~~~~~~lg~~~~~ 234 (316)
.-.++.+++.+-+-.+..... -...+..+|+++...+.++++++.|++|++..... +| -...++..||..+..
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 444556666665555543222 23577789999999999999999999999965431 12 235678899999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CChhHHHHHHH
Q 021175 235 EGKLDKGISQFETAVKLQPGY----------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP------NNKVARPRRDA 298 (316)
Q Consensus 235 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~l~~ 298 (316)
.+|+++|.-+..+|.++-.+. .-+.+.++..+..+|+...|.++.+++.++.- -.......++.
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 999999999999999875432 34667889999999999999999999988732 23344556788
Q ss_pred HHhhCCCCCCC
Q 021175 299 LKDRVPLYKGV 309 (316)
Q Consensus 299 l~~~~~~~~~A 309 (316)
++...|+.+.+
T Consensus 255 IyR~~gd~e~a 265 (518)
T KOG1941|consen 255 IYRSRGDLERA 265 (518)
T ss_pred HHHhcccHhHH
Confidence 89888887654
No 222
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.85 E-value=0.00022 Score=62.41 Aligned_cols=117 Identities=20% Similarity=0.158 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 021175 186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR-EGKLDKGISQFETAVKLQPGYVTAWNNLGD 264 (316)
Q Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 264 (316)
+|..+.+...+.+..+.|...|.+|.+ ..+....+|...|.+-+. .++.+.|.+.|+.+++..|.+...|.....
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~----~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK----DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 577777778888889999999999987 566678899999999777 566666999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHhhCCCC
Q 021175 265 AYEKKKDLKSALKAFEEVLLFDPNNK---VARPRRDALKDRVPLY 306 (316)
Q Consensus 265 ~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~l~~l~~~~~~~ 306 (316)
.+...|+.+.|...|++++..-|... ..|......+...|+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl 123 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDL 123 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999876654 4566666666665554
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.85 E-value=0.00054 Score=64.26 Aligned_cols=93 Identities=16% Similarity=0.206 Sum_probs=74.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 021175 157 IRQVLVRRELDLSAKELQEQVRSGDA----SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY 232 (316)
Q Consensus 157 ~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~ 232 (316)
++-...+|+.++|++.+++++..... ..-+++.+|.++..+++|++|.+++.+..+. .+-..+-+.|..|.++
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~---s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE---SKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc---cccHHHHHHHHHHHHH
Confidence 34445899999999999998854333 2457889999999999999999999999993 2334566677789999
Q ss_pred HHcCCH-------HHHHHHHHHHHHhC
Q 021175 233 VREGKL-------DKGISQFETAVKLQ 252 (316)
Q Consensus 233 ~~~g~~-------~~A~~~~~~al~~~ 252 (316)
...|+. ++|.+.++++-...
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 999999 88888888876653
No 224
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.0014 Score=54.27 Aligned_cols=132 Identities=16% Similarity=0.202 Sum_probs=90.7
Q ss_pred hhhHHHHHHHHHHHHHc----C-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHHHH
Q 021175 163 RRELDLSAKELQEQVRS----G-DA-SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ--DLAQVYNALGVSYVR 234 (316)
Q Consensus 163 ~~~~~~A~~~~~~al~~----~-p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p--~~~~~~~~lg~~~~~ 234 (316)
.++|+.|-..|.++-+. + .+ .+..|...+++| +.++.++|+++++++++++..+.. .-+..+..+|.+|..
T Consensus 47 aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs 125 (288)
T KOG1586|consen 47 AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES 125 (288)
T ss_pred HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh
Confidence 44555555555554331 2 22 244555555555 556999999999999997653222 224456678999976
Q ss_pred c-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 021175 235 E-GKLDKGISQFETAVKLQPGY------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR 295 (316)
Q Consensus 235 ~-g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 295 (316)
. .++++|+.+|+++-+..... -.++...+..-...|+|.+|++.|++.....-++.-..+.
T Consensus 126 dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 126 DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhH
Confidence 5 99999999999999876543 2445555666677899999999999998877776555443
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.78 E-value=0.0053 Score=55.20 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 021175 258 AWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDA 298 (316)
Q Consensus 258 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~ 298 (316)
.+-.++.+..-.|++++|..++++++++.|.......-+..
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~n 347 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLEN 347 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHH
Confidence 34456677778899999999999999999877655444433
No 226
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00024 Score=59.09 Aligned_cols=98 Identities=6% Similarity=0.100 Sum_probs=85.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHH--------cCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc
Q 021175 158 RQVLVRRELDLSAKELQEQVR--------SGDAS----------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ 219 (316)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~al~--------~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p 219 (316)
+.++..|+|.+|...|++++. ..|.. ...+.|...++...|+|-+++++-...+. .+|
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~----~~~ 261 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR----HHP 261 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh----cCC
Confidence 344589999999999999874 34443 34688999999999999999999999999 699
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 021175 220 DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAW 259 (316)
Q Consensus 220 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 259 (316)
.+..+|+..|.++...=+.++|...|.++++++|....+-
T Consensus 262 ~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 262 GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 9999999999999999999999999999999999875543
No 227
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.75 E-value=5e-05 Score=43.32 Aligned_cols=30 Identities=33% Similarity=0.657 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 021175 224 VYNALGVSYVREGKLDKGISQFETAVKLQP 253 (316)
Q Consensus 224 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 253 (316)
+++.+|.+|..+|++++|+++|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344445555555555555555555544444
No 228
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.74 E-value=6.3e-05 Score=42.91 Aligned_cols=32 Identities=41% Similarity=0.702 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 021175 257 TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288 (316)
Q Consensus 257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 288 (316)
.+++.+|.+|..+|++++|.++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777888888888888888888888888774
No 229
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.68 E-value=2.4e-05 Score=67.83 Aligned_cols=91 Identities=23% Similarity=0.177 Sum_probs=78.8
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD 239 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~ 239 (316)
.+..|.+++|++.+..++.++|..+..|...+.++.+.++...|+.-+..+++ ++|+.+.-|-..|.+...+|+++
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e----in~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE----INPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhc----cCcccccccchhhHHHHHhhchH
Confidence 44788888899999999999998888888899999999999999999999988 78888888888888888889999
Q ss_pred HHHHHHHHHHHhCCC
Q 021175 240 KGISQFETAVKLQPG 254 (316)
Q Consensus 240 ~A~~~~~~al~~~p~ 254 (316)
+|...++.+++++-+
T Consensus 200 ~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 200 EAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999888887644
No 230
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=0.011 Score=54.06 Aligned_cols=140 Identities=12% Similarity=0.136 Sum_probs=116.6
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
..++++..|...+++++..+..+...|...+..-++.+....|...+++|+. .-|.--..|+..-.+-..+|+.+.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt----~lPRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT----ILPRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH----hcchHHHHHHHHHHHHHHhcccHH
Confidence 3788999999999999999999999999999999999999999999999999 678888888888888888999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY 306 (316)
Q Consensus 241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~ 306 (316)
|.+.|++=++..|+ .++|...-..-...+..+.|...|++.+-.+|+ ...|...+....+-|+.
T Consensus 160 aRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 160 ARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcH
Confidence 99999999998886 456666666667777888888888888888875 44555555555555543
No 231
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.65 E-value=0.0049 Score=45.54 Aligned_cols=90 Identities=19% Similarity=0.059 Sum_probs=54.0
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCc--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCcH----
Q 021175 196 RRKFYPAATKYLLQAIEKWDGDDQ--------DLAQVYNALGVSYVREGKLDKGISQFETAVK-------LQPGYV---- 256 (316)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------~~p~~~---- 256 (316)
..|.|++|...++++++....+.| -++-++..|+.++..+|+|++++..-++++. ++.+..
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 345666666666666665433222 1355666677777777777776666666664 233332
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 257 TAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
.+-++.+..+...|+.++|+..|+.+-++
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 34467777888888888888888877653
No 232
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.64 E-value=1.9e-05 Score=68.48 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=87.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 021175 191 GAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK 270 (316)
Q Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 270 (316)
+.-.+..|++++|++++..+++ ++|..+..|...+.++.++++...|+..+..|+.++|+.+.-|-..|.+...+|
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~----lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIE----LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred HHHHhcCcchhhhhcccccccc----cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 3445567889999999999999 799999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 021175 271 DLKSALKAFEEVLLFDPN 288 (316)
Q Consensus 271 ~~~~A~~~~~~al~~~p~ 288 (316)
++++|...+..+.+++-+
T Consensus 197 ~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYD 214 (377)
T ss_pred chHHHHHHHHHHHhcccc
Confidence 999999999999988644
No 233
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.64 E-value=0.023 Score=50.74 Aligned_cols=125 Identities=12% Similarity=-0.009 Sum_probs=83.3
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHH---HHHHHHHHHH-HHcCC
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLA---QVYNALGVSY-VREGK 237 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~---~~~~~lg~~~-~~~g~ 237 (316)
..|+.+.|..+-+++-...|.-+-++...-......|+|+.|++..+...+..- +.++.+ .+-..-+... .-.-+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-ie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV-IEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999888888887888899999999999987665210 122111 1111111111 12235
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175 238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287 (316)
Q Consensus 238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 287 (316)
...|...-.++.++.|+...+-..-+..+++.|+..++-..++.+.+..|
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 66666666667777777666666666666666666666666666666655
No 234
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.63 E-value=0.0014 Score=51.16 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=67.1
Q ss_pred HhhhHHHHHHHHHHHHHcCCCC----------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc
Q 021175 162 VRRELDLSAKELQEQVRSGDAS----------------------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ 219 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p 219 (316)
..++.+.+++.+++++...... ..+...++..+...|++++|+..+++++. .+|
T Consensus 18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~----~dP 93 (146)
T PF03704_consen 18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA----LDP 93 (146)
T ss_dssp HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----HST
T ss_pred HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh----cCC
Confidence 4567777778888877643211 34666778888899999999999999999 699
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175 220 DLAQVYNALGVSYVREGKLDKGISQFETAVK 250 (316)
Q Consensus 220 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 250 (316)
.+..++..+-.+|...|+..+|++.|++..+
T Consensus 94 ~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 94 YDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999988765
No 235
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.00055 Score=57.64 Aligned_cols=122 Identities=18% Similarity=0.205 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC--CcHHH
Q 021175 185 TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL----QP--GYVTA 258 (316)
Q Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p--~~~~~ 258 (316)
.+.+.+..++...|+|.-....+.+.++. .+|.++.....||.+.++.||.+.|..++++.-+. +. ..--+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~---~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY---YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHh---CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 46777888899999999999999999995 45788888899999999999999999999955433 22 23456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 259 WNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 259 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
..+.+.+|.-.+++.+|...|.+++..||.++.+-.+.+.+...+|+..+|
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHH
Confidence 778888999999999999999999999999999999888888777776544
No 236
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0011 Score=57.69 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=84.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 021175 157 IRQVLVRRELDLSAKELQEQVRSGDAS----ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY 232 (316)
Q Consensus 157 ~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~ 232 (316)
|+.++..++|..|+..|.+.++..-.+ +..|.|.+-+....|+|..|+.-..+++. .+|.+..+++.-+.|+
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~----~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK----LKPTHLKAYIRGAKCL 163 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh----cCcchhhhhhhhhHHH
Confidence 344558999999999999999865443 56889999999999999999999999999 7999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCc
Q 021175 233 VREGKLDKGISQFETAVKLQPGY 255 (316)
Q Consensus 233 ~~~g~~~~A~~~~~~al~~~p~~ 255 (316)
+.++++++|..++++.++++...
T Consensus 164 ~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHH
Confidence 99999999999999998776543
No 237
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.51 E-value=0.0041 Score=59.77 Aligned_cols=145 Identities=20% Similarity=0.228 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhcCC
Q 021175 147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRS-----GDASATEYFELGAVMLRRK-----FYPAATKYLLQAIEKWDG 216 (316)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~ 216 (316)
+...+|..+.....-..+|.+.|+.+++.+.+. ....+.+.+.+|.+|.+.. +++.|..+|.++.+.
T Consensus 246 a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--- 322 (552)
T KOG1550|consen 246 AQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--- 322 (552)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc---
Confidence 344445555444344677999999999998771 1125668899999999853 778899999999883
Q ss_pred CCccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCC
Q 021175 217 DDQDLAQVYNALGVSYVREG---KLDKGISQFETAVKLQPGYVTAWNNLGDAYEK----KKDLKSALKAFEEVLLFDPNN 289 (316)
Q Consensus 217 ~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~ 289 (316)
+++.+.+.+|.++..-. ++..|.++|..|.+ -.+..+.+++|.||.. .-+...|..+++++.+.+ +
T Consensus 323 ---g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~ 395 (552)
T KOG1550|consen 323 ---GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--N 395 (552)
T ss_pred ---CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--C
Confidence 45668888999998765 67899999999976 5678899999999875 347899999999999987 4
Q ss_pred hhHHHHHHHHHh
Q 021175 290 KVARPRRDALKD 301 (316)
Q Consensus 290 ~~a~~~l~~l~~ 301 (316)
+.+...++.++.
T Consensus 396 ~~A~~~~~~~~~ 407 (552)
T KOG1550|consen 396 PSAAYLLGAFYE 407 (552)
T ss_pred hhhHHHHHHHHH
Confidence 566666655543
No 238
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.015 Score=50.84 Aligned_cols=116 Identities=10% Similarity=-0.072 Sum_probs=99.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHH
Q 021175 190 LGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL-QPGY---VTAWNNLGDA 265 (316)
Q Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~ 265 (316)
-+.+....|++-+|-...++.++ ..|.+.-++..--.+++..|+.+.-...+++.+.. +|+. .-++-.++-+
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~----d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLD----DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHH----hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 34556678999999999999999 68999888888888999999999999999999987 5555 4455567778
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 266 YEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 266 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
+...|-+++|.+.-+++++++|.+.-+...++.+.+-.|+.++.
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg 228 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEG 228 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhH
Confidence 88999999999999999999999999999999998888887654
No 239
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.46 E-value=0.00066 Score=42.93 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175 257 TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR 302 (316)
Q Consensus 257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~ 302 (316)
+.++.++..+.++|+|++|..+.+.+++++|++.++......+..+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777777776665555443
No 240
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.42 E-value=0.012 Score=51.72 Aligned_cols=133 Identities=23% Similarity=0.208 Sum_probs=102.2
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC-
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLR----RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG- 236 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g- 236 (316)
...+..+|...|+. ......+.+.+++|..+.. ..|..+|..+|+++.+. -++.-..+.+++|.+|..-+
T Consensus 89 v~~~~~~A~~~~~~--~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~---g~~~a~~~~~~l~~~~~~g~~ 163 (292)
T COG0790 89 VSRDKTKAADWYRC--AAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL---GNVEAALAMYRLGLAYLSGLQ 163 (292)
T ss_pred ccccHHHHHHHHHH--HhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc---CChhHHHHHHHHHHHHHcChh
Confidence 34568889999994 4445678889999999987 45999999999999983 12221455888888887642
Q ss_pred ------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175 237 ------KLDKGISQFETAVKLQPGYVTAWNNLGDAYEK----KKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP 304 (316)
Q Consensus 237 ------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~ 304 (316)
+..+|...|.++.... ++.+.+++|.+|.. ..+.++|..+|+++.+... ..+...++ +....|
T Consensus 164 ~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 164 ALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred hhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 3347999999988866 78899999988866 3488999999999998876 78888888 444444
No 241
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.39 E-value=0.00036 Score=39.24 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 021175 224 VYNALGVSYVREGKLDKGISQFETAVKLQPG 254 (316)
Q Consensus 224 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 254 (316)
+++++|.++...|++++|++.|++.++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455555555555555555555555555554
No 242
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.38 E-value=0.00092 Score=64.86 Aligned_cols=107 Identities=17% Similarity=0.092 Sum_probs=91.8
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 021175 195 LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS 274 (316)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 274 (316)
...+++.+|.+...+.++ -.|+...+...-|.++.++|+.++|..+++..-...+++......+-.+|..+|+.++
T Consensus 20 ld~~qfkkal~~~~kllk----k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLK----KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 356789999999999999 4899999999999999999999999988888777888888899999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175 275 ALKAFEEVLLFDPNNKVARPRRDALKDRVPLY 306 (316)
Q Consensus 275 A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~ 306 (316)
|..+|+++.+.+|+ .+....+=..+.+.++|
T Consensus 96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 96 AVHLYERANQKYPS-EELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence 99999999999999 66655554445444444
No 243
>PRK10941 hypothetical protein; Provisional
Probab=97.35 E-value=0.003 Score=54.53 Aligned_cols=81 Identities=12% Similarity=0.186 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 021175 222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD 301 (316)
Q Consensus 222 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~ 301 (316)
.....++-.+|.+.++++.|+.+.+..+.++|+++.-+...|.+|.++|.+..|...++..++..|+++.+......+..
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999988766655544
Q ss_pred h
Q 021175 302 R 302 (316)
Q Consensus 302 ~ 302 (316)
.
T Consensus 261 l 261 (269)
T PRK10941 261 I 261 (269)
T ss_pred H
Confidence 3
No 244
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.34 E-value=0.02 Score=44.97 Aligned_cols=114 Identities=19% Similarity=0.064 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 021175 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG 263 (316)
Q Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 263 (316)
...+..+..+-...++.+++...+...-- +.|+.++.-..-|..+...|++.+|+..+++..+-.|..+.+.-.++
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrv----LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRV----LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHH----hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34556666666777788888887776666 68888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175 264 DAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV 303 (316)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~ 303 (316)
.|+..+||.+- ..+-+++++..+ ++.+......+..+-
T Consensus 86 ~CL~~~~D~~W-r~~A~evle~~~-d~~a~~Lv~~Ll~~~ 123 (160)
T PF09613_consen 86 LCLYALGDPSW-RRYADEVLESGA-DPDARALVRALLARA 123 (160)
T ss_pred HHHHHcCChHH-HHHHHHHHhcCC-ChHHHHHHHHHHHhc
Confidence 88888887542 333444555443 455555555554443
No 245
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.33 E-value=0.00043 Score=40.08 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=10.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 021175 225 YNALGVSYVREGKLDKGISQFET 247 (316)
Q Consensus 225 ~~~lg~~~~~~g~~~~A~~~~~~ 247 (316)
+.+||.+|...|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444555555444444
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.014 Score=48.93 Aligned_cols=90 Identities=16% Similarity=0.086 Sum_probs=40.5
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHH
Q 021175 196 RRKFYPAATKYLLQAIEKWDGDDQ--DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV------TAWNNLGDAYE 267 (316)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~ 267 (316)
..-++++|++.|++++......+. .-.+.+-..+.++.+.+++++|-..+.+-....-..- ..+...-.+|.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 344445555555555554332111 1122233344445555555555555544333322221 11222333444
Q ss_pred HcCCHHHHHHHHHHHHhc
Q 021175 268 KKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 268 ~~g~~~~A~~~~~~al~~ 285 (316)
...||..|..+++..-++
T Consensus 202 ~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred hHHHHHHHHHHhcchhcC
Confidence 555777777777776655
No 247
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.32 E-value=0.00021 Score=41.40 Aligned_cols=29 Identities=34% Similarity=0.622 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 021175 258 AWNNLGDAYEKKKDLKSALKAFEEVLLFD 286 (316)
Q Consensus 258 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 286 (316)
++.+||.+|.++|++++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999966543
No 248
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.31 E-value=0.00086 Score=62.30 Aligned_cols=104 Identities=15% Similarity=0.087 Sum_probs=65.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 021175 192 AVMLRRKFYPAATKYLLQAIEKWDGDDQDL-AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK 270 (316)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 270 (316)
..+...|+...|+.++..|+- ..|.. -....+|+.+...-|-.-.|-..+.+++.++...+-.++.+|.+|..+.
T Consensus 615 lywr~~gn~~~a~~cl~~a~~----~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 615 LYWRAVGNSTFAIACLQRALN----LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK 690 (886)
T ss_pred ceeeecCCcHHHHHHHHHHhc----cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence 333445666666666666666 34432 2345566666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175 271 DLKSALKAFEEVLLFDPNNKVARPRRDAL 299 (316)
Q Consensus 271 ~~~~A~~~~~~al~~~p~~~~a~~~l~~l 299 (316)
+.+.|++.++.+++++|+++.....+..+
T Consensus 691 ~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 691 NISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 67777777777777666666666555444
No 249
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.30 E-value=0.011 Score=43.64 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=72.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---CCccHH
Q 021175 158 RQVLVRRELDLSAKELQEQVRSGDA------------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG---DDQDLA 222 (316)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~p~~~ 222 (316)
+..+..|.|++|...++++++.... ++-++..|+.++...|+|++++...++++..+.. ++.+..
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG 96 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG 96 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence 3455788999999999999875432 2457889999999999999999999999987643 455544
Q ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175 223 Q----VYNALGVSYVREGKLDKGISQFETAVK 250 (316)
Q Consensus 223 ~----~~~~lg~~~~~~g~~~~A~~~~~~al~ 250 (316)
. +-++.|..+...|+.++|++.|+.+-+
T Consensus 97 klWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 97 KLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4 446789999999999999999999875
No 250
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.29 E-value=0.0013 Score=56.72 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=41.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 021175 192 AVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG 263 (316)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 263 (316)
.-..+.|+.++|...|+.|++ +.|.+++++..+|......++.-+|-++|-+|+.++|.+.+++.+..
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAla----laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALA----LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHhccchHHHHHHHHHHHh----cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 334455666666666666666 56666666666666666566666666666666666666666655554
No 251
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.29 E-value=0.02 Score=52.71 Aligned_cols=108 Identities=11% Similarity=0.010 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHH
Q 021175 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ--DLAQVYNALGVSYVREGKLDKGISQFETAVKL-QPGYVTAWN 260 (316)
Q Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~ 260 (316)
..+...+|.+..+.|+.+||++.++..++ ..| ++..++.+|-.++..+++|+++...+.+--++ -|+.+...+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlk----e~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~Y 334 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLK----EFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICY 334 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHh----hCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHH
Confidence 34566899999999999999999999998 344 36779999999999999999999999886443 256666666
Q ss_pred HHHHHHHH-cCC---------------HHHHHHHHHHHHhcCCCChhHHHH
Q 021175 261 NLGDAYEK-KKD---------------LKSALKAFEEVLLFDPNNKVARPR 295 (316)
Q Consensus 261 ~lg~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~a~~~ 295 (316)
.-+..-.+ .|+ -..|.+...+|++.||.-+.....
T Consensus 335 TaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 335 TAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred HHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 55544322 222 235788999999999987655433
No 252
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.26 E-value=0.0014 Score=60.90 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=90.2
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASA-TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
..|+...|++++..++...|... ....++++++.+.|-..+|...+.+++. +....+-.++.+|.++....+.++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~----~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALA----INSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHh----hcccCchHHHhcchhHHHHhhhHH
Confidence 57899999999999999999643 4678999999999999999999999999 566777889999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 021175 241 GISQFETAVKLQPGYVTAWNNLGDAYE 267 (316)
Q Consensus 241 A~~~~~~al~~~p~~~~~~~~lg~~~~ 267 (316)
|++.+++|++++|+++.+-..|-.+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999887776655544
No 253
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.25 E-value=0.00053 Score=38.54 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175 257 TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289 (316)
Q Consensus 257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 289 (316)
++++++|.++...|++++|++.|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999974
No 254
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.21 E-value=0.0031 Score=44.93 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 021175 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288 (316)
Q Consensus 243 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 288 (316)
+.+++.++.+|++..+.+.+|..+...|++++|++.+-++++.+++
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 3444444445555555555555555555555555555555544443
No 255
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.20 E-value=0.0012 Score=60.27 Aligned_cols=113 Identities=16% Similarity=0.211 Sum_probs=89.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHH-HHcCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----CC-----
Q 021175 156 VIRQVLVRRELDLSAKELQEQ-VRSGDA--------SATEYFELGAVMLRRKFYPAATKYLLQAIEKW-----DG----- 216 (316)
Q Consensus 156 ~~~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~----- 216 (316)
..+..+..|++.+|.+.+... +...|. ..-.|+|+|.++++.|.|.-+..+|.+|++-. ..
T Consensus 246 Ksq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~ 325 (696)
T KOG2471|consen 246 KSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK 325 (696)
T ss_pred HHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 345566788888888876653 333332 23357899999999999999999999999621 11
Q ss_pred ----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 021175 217 ----DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEK 268 (316)
Q Consensus 217 ----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 268 (316)
......+..||.|..|...|++-.|.++|.++++..-.++..|..+++|...
T Consensus 326 ~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 326 TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1224578899999999999999999999999999999999999999998763
No 256
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.20 E-value=0.083 Score=46.31 Aligned_cols=136 Identities=21% Similarity=0.197 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHhcCCCC
Q 021175 147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDAS-ATEYFELGAVMLRRK-------FYPAATKYLLQAIEKWDGDD 218 (316)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~~~~~ 218 (316)
+...+|..+..... ...+..+|...|+++.+.+... ..+.+.+|..+..-. +...|...|.++...
T Consensus 111 a~~~lg~~~~~G~g-v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~----- 184 (292)
T COG0790 111 ALFNLGLMYANGRG-VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL----- 184 (292)
T ss_pred HHHhHHHHHhcCCC-cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh-----
Confidence 33444555542222 2448999999999999986655 466888888887652 233799999999883
Q ss_pred ccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---------------CHHHHHHHH
Q 021175 219 QDLAQVYNALGVSYVR----EGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK---------------DLKSALKAF 279 (316)
Q Consensus 219 p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---------------~~~~A~~~~ 279 (316)
.++.+..++|.+|.. ..++++|+.+|+++.+... ....+.++ ++...| +...|...+
T Consensus 185 -~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~ 260 (292)
T COG0790 185 -GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWL 260 (292)
T ss_pred -cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHH
Confidence 377889999988865 4589999999999999877 88889999 666655 888899999
Q ss_pred HHHHhcCCCChhH
Q 021175 280 EEVLLFDPNNKVA 292 (316)
Q Consensus 280 ~~al~~~p~~~~a 292 (316)
.++-...+.....
T Consensus 261 ~~~~~~~~~~~~~ 273 (292)
T COG0790 261 QKACELGFDNACE 273 (292)
T ss_pred HHHHHcCChhHHH
Confidence 9888776654433
No 257
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.12 E-value=0.16 Score=45.56 Aligned_cols=119 Identities=17% Similarity=0.046 Sum_probs=89.5
Q ss_pred HhhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHH-HHHHHHHHHHcCCH
Q 021175 162 VRRELDLSAKELQEQVRSG--DASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQV-YNALGVSYVREGKL 238 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~-~~~lg~~~~~~g~~ 238 (316)
-.||-..|.+.-+++-+.- ...+-++..-++.-.-.|++++|.+-|+..+. +|..-.. +..|=.--.+.|+.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 3566667777666665332 23456777778888889999999999998887 6664332 11122223467999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
+.|..+-+++-...|.-+.++...-...+..||++.|++..+...+.
T Consensus 171 eaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 171 EAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 99999999999999999999988888889999999999988766543
No 258
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.033 Score=52.17 Aligned_cols=135 Identities=12% Similarity=0.021 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 021175 168 LSAKELQEQVRSGDASATEYFE--LGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQF 245 (316)
Q Consensus 168 ~A~~~~~~al~~~p~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 245 (316)
-++..+...+..+|.++..+.. +...+...++...+.-....++. .+|.++.++.+||.+....|....+...+
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLS----VNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHh----cCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 3566666667788887776443 46677778888899999999999 69999999999999988877777666666
Q ss_pred HH-HHHhCCCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175 246 ET-AVKLQPGYVTAWNNL------GDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY 306 (316)
Q Consensus 246 ~~-al~~~p~~~~~~~~l------g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~ 306 (316)
.+ +.+..|++......+ |.....+|+..++....+++.++.|.++.....+-...+....+
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~ 192 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSW 192 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccc
Confidence 55 888999987665555 88888899999999999999999999977766665555555555
No 259
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.097 Score=41.66 Aligned_cols=139 Identities=14% Similarity=0.053 Sum_probs=100.4
Q ss_pred HhhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175 162 VRRELDLSAKELQEQVRSGDA--SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD 239 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~ 239 (316)
..+..++|...|...-+.+-. ..-+.+..|.+....|+..+|+..|.+.-.-.+...+..-.+...-+..+...|-|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 577888899988887665543 245778888999999999999999999887222111122334555677788899998
Q ss_pred HHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 021175 240 KGISQFETAV-KLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD 301 (316)
Q Consensus 240 ~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~ 301 (316)
+-..-.+..- +-+|-...+.-.||..-.+.|++.+|..+|.+... +.+.+..-.+.+++..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 8766654432 34455577888999999999999999999998776 6666666655555543
No 260
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.02 E-value=0.026 Score=50.78 Aligned_cols=126 Identities=13% Similarity=0.171 Sum_probs=100.9
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-C---
Q 021175 180 GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ-P-G--- 254 (316)
Q Consensus 180 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p-~--- 254 (316)
.......+...+.+..+.|+++.|...+.++....+...+..+.+.+..+......|+.++|+..+++.+... . .
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 4456788999999999999999999999999884322223367788888999999999999999999888711 0 0
Q ss_pred -----------------------------cHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175 255 -----------------------------YVTAWNNLGDAYEKK------KDLKSALKAFEEVLLFDPNNKVARPRRDAL 299 (316)
Q Consensus 255 -----------------------------~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~a~~~l~~l 299 (316)
.+.++..+|...... ++.+++...|+++++++|+...++...+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 145667777777777 889999999999999999999999998887
Q ss_pred HhhCCC
Q 021175 300 KDRVPL 305 (316)
Q Consensus 300 ~~~~~~ 305 (316)
....-+
T Consensus 302 ~~~~~~ 307 (352)
T PF02259_consen 302 NDKLLE 307 (352)
T ss_pred HHHHHH
Confidence 766543
No 261
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.99 E-value=0.013 Score=44.37 Aligned_cols=84 Identities=21% Similarity=0.304 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 021175 221 LAQVYNALGVSYVRE---GKLDKGISQFETAVK-LQPG-YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR 295 (316)
Q Consensus 221 ~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 295 (316)
..+..++++.++... .+..+.+..+++.++ -.|. .-+..+.|+..+++.|+|++++.+.+..++.+|++.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 345566677666554 445677888888876 4443 35677788888888888888888888888888888888777
Q ss_pred HHHHHhhCC
Q 021175 296 RDALKDRVP 304 (316)
Q Consensus 296 l~~l~~~~~ 304 (316)
...++.++.
T Consensus 111 k~~ied~it 119 (149)
T KOG3364|consen 111 KETIEDKIT 119 (149)
T ss_pred HHHHHHHHh
Confidence 766665543
No 262
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.99 E-value=0.025 Score=55.00 Aligned_cols=122 Identities=19% Similarity=0.189 Sum_probs=88.1
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------CCCc----------cHHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWD------GDDQ----------DLAQVY 225 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------~~~p----------~~~~~~ 225 (316)
..|.|++|.+..+.--++ +--..|++.+.-+...+|.+.|+++|+|+--... ..+| .+...|
T Consensus 838 s~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~ 915 (1416)
T KOG3617|consen 838 SQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLY 915 (1416)
T ss_pred hcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHH
Confidence 566677666544432111 2345789999999999999999999997532100 0123 234566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 021175 226 NALGVSYVREGKLDKGISQFETAVKLQ---------------------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLL 284 (316)
Q Consensus 226 ~~lg~~~~~~g~~~~A~~~~~~al~~~---------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 284 (316)
...|......|+.+.|+.+|..|-+.. ..+..+.|.+|..|...|+..+|+..|.++-.
T Consensus 916 ~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 916 SWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 677888889999999999998886532 34566889999999999999999999888754
Q ss_pred c
Q 021175 285 F 285 (316)
Q Consensus 285 ~ 285 (316)
+
T Consensus 996 f 996 (1416)
T KOG3617|consen 996 F 996 (1416)
T ss_pred H
Confidence 4
No 263
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.97 E-value=0.0013 Score=35.90 Aligned_cols=29 Identities=31% Similarity=0.676 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 021175 225 YNALGVSYVREGKLDKGISQFETAVKLQP 253 (316)
Q Consensus 225 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p 253 (316)
+.++|.++..+|++++|+..++++++.+|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444444444444444444444444444
No 264
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.96 E-value=0.0014 Score=54.17 Aligned_cols=59 Identities=29% Similarity=0.593 Sum_probs=41.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 021175 232 YVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNK 290 (316)
Q Consensus 232 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 290 (316)
..+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34556777777777777777777777777777777777777777777777777777653
No 265
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.96 E-value=0.061 Score=51.05 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=116.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHH-cCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 021175 158 RQVLVRRELDLSAKELQEQVR-SGDAS-----ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVS 231 (316)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~al~-~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~ 231 (316)
+..+..|+..+-+..|.++++ .+|.. ...|..+|..|...|+.+.|...|+++.+..-+.-.+-+.+|.+.|..
T Consensus 355 RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waem 434 (835)
T KOG2047|consen 355 RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEM 434 (835)
T ss_pred hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHH
Confidence 334567888889999999886 46643 468999999999999999999999999984111122457899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 021175 232 YVREGKLDKGISQFETAVKLQPG------------------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293 (316)
Q Consensus 232 ~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 293 (316)
-.+..+++.|.+..++|...-.+ ...+|..++......|-++.-...|++.+++.--.|..-
T Consensus 435 Elrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii 514 (835)
T KOG2047|consen 435 ELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII 514 (835)
T ss_pred HHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999998864211 145777888888889999999999999999988888888
Q ss_pred HHHHHHHhhCCCC
Q 021175 294 PRRDALKDRVPLY 306 (316)
Q Consensus 294 ~~l~~l~~~~~~~ 306 (316)
.|.+...+....+
T Consensus 515 ~NyAmfLEeh~yf 527 (835)
T KOG2047|consen 515 INYAMFLEEHKYF 527 (835)
T ss_pred HHHHHHHHhhHHH
Confidence 8877766554433
No 266
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.95 E-value=0.0071 Score=38.24 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 021175 223 QVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDA 265 (316)
Q Consensus 223 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 265 (316)
++++.+|..+++.|+|++|.++.+.+++..|++.++......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4567788888888899999888888888888887776554443
No 267
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.90 E-value=0.0017 Score=35.38 Aligned_cols=33 Identities=48% Similarity=0.688 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175 257 TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNN 289 (316)
Q Consensus 257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 289 (316)
.+++++|.++..+|++++|..+++++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 468899999999999999999999999998863
No 268
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.89 E-value=0.053 Score=51.44 Aligned_cols=151 Identities=12% Similarity=0.101 Sum_probs=98.3
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHcCChHHH
Q 021175 128 EIGELFELGIQLSYLLLLLGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDA----SATEYFELGAVMLRRKFYPAA 203 (316)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A 203 (316)
+++...+|...... ....+...+.+|- ..|+.+.|...++++.+.+-. -+.+|.+-|..-.+..+++.|
T Consensus 372 eAv~~vdP~ka~Gs--~~~Lw~~faklYe-----~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~A 444 (835)
T KOG2047|consen 372 EAVKTVDPKKAVGS--PGTLWVEFAKLYE-----NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAA 444 (835)
T ss_pred HHHHccCcccCCCC--hhhHHHHHHHHHH-----hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHH
Confidence 45555655554222 2234455555555 899999999999999886533 367899999999999999999
Q ss_pred HHHHHHHHHhcC--------CCCc------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 021175 204 TKYLLQAIEKWD--------GDDQ------DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKK 269 (316)
Q Consensus 204 ~~~~~~al~~~~--------~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 269 (316)
..+.++|...-. ...| .+...|...+......|-++.-...|++.+++.--.++.-.|.|..+...
T Consensus 445 l~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh 524 (835)
T KOG2047|consen 445 LKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH 524 (835)
T ss_pred HHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 999999886311 1112 12334455555555666666667777777776666666666666666655
Q ss_pred CCHHHHHHHHHHHHhc
Q 021175 270 KDLKSALKAFEEVLLF 285 (316)
Q Consensus 270 g~~~~A~~~~~~al~~ 285 (316)
.-+++|.+.|++.+.+
T Consensus 525 ~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 525 KYFEESFKAYERGISL 540 (835)
T ss_pred HHHHHHHHHHHcCCcc
Confidence 5555555555555554
No 269
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.80 E-value=0.1 Score=47.16 Aligned_cols=122 Identities=13% Similarity=0.065 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-HhCCCcHHH
Q 021175 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR---EGKLDKGISQFETAV-KLQPGYVTA 258 (316)
Q Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~ 258 (316)
.++...++=..|...++|+.-++..+..-..-....++...+....|.++-+ .|+.++|++.+..++ ...+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4566677777788888888888887776662111134556667777888877 888888888888844 445667888
Q ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175 259 WNNLGDAYEKK---------KDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPL 305 (316)
Q Consensus 259 ~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~ 305 (316)
+..+|.+|... ...++|+.+|+++.+++|+. -.-.|++.+....|.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence 88888887642 23678888888888888653 333344445444443
No 270
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.32 Score=44.88 Aligned_cols=140 Identities=17% Similarity=0.079 Sum_probs=103.3
Q ss_pred HhhhHHHHHHHHHHHHH---cCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccH--HHHHHHHH
Q 021175 162 VRRELDLSAKELQEQVR---SGDA-------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDL--AQVYNALG 229 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~---~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~--~~~~~~lg 229 (316)
..|++.+|++....+.+ ..|. .+..++.+|.....-+.++.|+.+|..|.++ .+..+ +.+-.|++
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~---t~~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL---TESIDLQAFCNLNLA 411 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh---hhHHHHHHHHHHhHH
Confidence 68899999988887765 3443 4678889999999999999999999999996 33333 45567789
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH-------
Q 021175 230 VSYVREGKLDKGISQFETAVKLQPGY----------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVA------- 292 (316)
Q Consensus 230 ~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a------- 292 (316)
.+|.+.|+-+.-.+.++. +.|.+ ..+++..|...+.++++.||....++.++.. +.+-
T Consensus 412 i~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~rL~a~ 486 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNRLTAC 486 (629)
T ss_pred HHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHHHHHH
Confidence 999998887665555443 34442 4577888888899999999999999999876 2332
Q ss_pred -HHHHHHHHhhCCCCCCC
Q 021175 293 -RPRRDALKDRVPLYKGV 309 (316)
Q Consensus 293 -~~~l~~l~~~~~~~~~A 309 (316)
...++.+-.-+|+..++
T Consensus 487 ~LvLLs~v~lslgn~~es 504 (629)
T KOG2300|consen 487 SLVLLSHVFLSLGNTVES 504 (629)
T ss_pred HHHHHHHHHHHhcchHHH
Confidence 33445566666665443
No 271
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.74 E-value=0.015 Score=41.38 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCH
Q 021175 204 TKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY--VTAWNNLGDAYEKKKDL 272 (316)
Q Consensus 204 ~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~ 272 (316)
+..+++.++ .+|++..+.+.+|..+...|++++|++.+-+.++.++++ ..+.-.+-.++...|.-
T Consensus 8 ~~al~~~~a----~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 8 IAALEAALA----ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHH----HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHH----cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 344555555 466666777777777777777777777777777666554 33444444444444443
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.71 E-value=0.1 Score=46.84 Aligned_cols=131 Identities=14% Similarity=0.203 Sum_probs=103.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hcCCC---------------
Q 021175 158 RQVLVRRELDLSAKELQEQVRSGD----ASATEYFELGAVMLRRKFYPAATKYLLQAIE-KWDGD--------------- 217 (316)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~--------------- 217 (316)
+-.-..|.++.|...+.++...++ ..+...+..+......|+..+|+..++..+. .....
T Consensus 154 ~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (352)
T PF02259_consen 154 KLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE 233 (352)
T ss_pred HHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc
Confidence 334478999999999999888653 2577888899999999999999999998888 22110
Q ss_pred --------------CccHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC------
Q 021175 218 --------------DQDLAQVYNALGVSYVRE------GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKD------ 271 (316)
Q Consensus 218 --------------~p~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------ 271 (316)
....+.++..+|...... ++.+++++.|+++++.+|+...+|+.+|..+...=+
T Consensus 234 ~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~ 313 (352)
T PF02259_consen 234 SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREK 313 (352)
T ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcc
Confidence 122356777788877777 899999999999999999999999999987765311
Q ss_pred -----------HHHHHHHHHHHHhcCCC
Q 021175 272 -----------LKSALKAFEEVLLFDPN 288 (316)
Q Consensus 272 -----------~~~A~~~~~~al~~~p~ 288 (316)
...|+..|-+++...++
T Consensus 314 ~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 314 EESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 13588999999998887
No 273
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.70 E-value=0.068 Score=43.29 Aligned_cols=100 Identities=16% Similarity=-0.008 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHH----
Q 021175 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQP--GYVT---- 257 (316)
Q Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~---- 257 (316)
-.++..+|..|.+.|+.++|++.|.++.+.... .......+.++-.+....+++.....+..++-..-. .+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 468899999999999999999999998885321 234567788888899999999999999999887543 3333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 021175 258 AWNNLGDAYEKKKDLKSALKAFEEVLL 284 (316)
Q Consensus 258 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 284 (316)
....-|..+...++|.+|...|-.+..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 344567778889999999999876654
No 274
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.3 Score=41.12 Aligned_cols=119 Identities=15% Similarity=0.137 Sum_probs=62.9
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDAS------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG--DDQDLAQVYNALGVSY 232 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~p~~~~~~~~lg~~~ 232 (316)
+.+.+.++|++.|++++..-.+. .+.+-..++++.+..++++|-..+.+-.-...+ ..+.....+...-.+|
T Consensus 121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~ 200 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY 200 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence 34555666666666665533221 234445556666666666666666555543222 1222233344344445
Q ss_pred HHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021175 233 VREGKLDKGISQFETAVKLQ----PGYVTAWNNLGDAYEKKKDLKSALKAFE 280 (316)
Q Consensus 233 ~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 280 (316)
....+|..|..+++...++. |++..+.-+|-..| ..||.++..+.+.
T Consensus 201 L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 201 LYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 55667777777777766543 34445555554443 4566666555443
No 275
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.60 E-value=0.042 Score=45.94 Aligned_cols=91 Identities=14% Similarity=0.053 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHHHhcCC---CCccHHHHHHHHHHHHHHcCCHHH-------HHHHHHHHHHhCCC------cHHHHHH
Q 021175 198 KFYPAATKYLLQAIEKWDG---DDQDLAQVYNALGVSYVREGKLDK-------GISQFETAVKLQPG------YVTAWNN 261 (316)
Q Consensus 198 g~~~~A~~~~~~al~~~~~---~~p~~~~~~~~lg~~~~~~g~~~~-------A~~~~~~al~~~p~------~~~~~~~ 261 (316)
..+++|++.|.-|+-...- .....+..+..+|.+|..+|+.++ |.+.|+++++.... .....+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 3445555555544432211 111335556666777776666443 44444444443221 2567788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 021175 262 LGDAYEKKKDLKSALKAFEEVLLFDPN 288 (316)
Q Consensus 262 lg~~~~~~g~~~~A~~~~~~al~~~p~ 288 (316)
+|.++.+.|++++|..+|.+++.....
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 888888999999999999888875433
No 276
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.57 E-value=0.0072 Score=52.19 Aligned_cols=69 Identities=7% Similarity=0.036 Sum_probs=63.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 021175 159 QVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVS 231 (316)
Q Consensus 159 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~ 231 (316)
.....|+.++|...|+.+++..|++++++...|......++.-+|-++|-+|+. +.|.+.+++.|.+..
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt----isP~nseALvnR~RT 193 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALT----ISPGNSEALVNRART 193 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee----eCCCchHHHhhhhcc
Confidence 344799999999999999999999999999999999999999999999999999 799999998887644
No 277
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.036 Score=47.79 Aligned_cols=119 Identities=11% Similarity=0.071 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHH
Q 021175 186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY-VTAWNNLGD 264 (316)
Q Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~ 264 (316)
.-+.-+.-....|++.+|...+..+++ ..|++..+...++.+|...|+.++|...+...=....+. .......-.
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~----~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ 211 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQ----AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIE 211 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHH----hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344556667788999999999999999 688899999999999999999999988876532111111 111001112
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 265 AYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 265 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
.+.+.....+. ..+++.+..+|++.++...++..+...|+.++|
T Consensus 212 ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~A 255 (304)
T COG3118 212 LLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAA 255 (304)
T ss_pred HHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 22333332222 345566788999999999999999999998765
No 278
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.52 E-value=0.024 Score=43.83 Aligned_cols=77 Identities=14% Similarity=-0.026 Sum_probs=45.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 021175 192 AVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKD 271 (316)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 271 (316)
..-...++.+++...+...-- +.|+.++....-|.++...|++++|+..+++..+-.+..+-+.-.++.|+..+||
T Consensus 18 ~~aL~~~d~~D~e~lLdALrv----LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRV----LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHH----hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 333345555666555554444 4666666666666666666666666666666666555556555666666666666
Q ss_pred H
Q 021175 272 L 272 (316)
Q Consensus 272 ~ 272 (316)
.
T Consensus 94 p 94 (153)
T TIGR02561 94 A 94 (153)
T ss_pred h
Confidence 4
No 279
>PRK10941 hypothetical protein; Provisional
Probab=96.50 E-value=0.038 Score=47.77 Aligned_cols=76 Identities=13% Similarity=0.000 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 021175 185 TEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGD 264 (316)
Q Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 264 (316)
....++-.++.+.++++.|..+.+..+. +.|+++.-+...|.+|.++|.+..|...++.-++..|+++.+-.-...
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~----l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQ----FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 3566788889999999999999999999 799999999999999999999999999999999999999876554433
No 280
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.49 E-value=0.0094 Score=55.03 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 021175 199 FYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE---GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSA 275 (316)
Q Consensus 199 ~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 275 (316)
....|+..|.++++ ..|.....+.+.+.++++. |+.-.|+.....|++++|....+++.|+.++..++++.+|
T Consensus 389 ~~~~~i~~~s~a~q----~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQ----YVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred HHHHHHHHHHHHhh----hccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 34445555555555 3444455555555444442 3444444445555555555555555555555555555555
Q ss_pred HHHHHHHHhcCC
Q 021175 276 LKAFEEVLLFDP 287 (316)
Q Consensus 276 ~~~~~~al~~~p 287 (316)
+.+...+....|
T Consensus 465 l~~~~alq~~~P 476 (758)
T KOG1310|consen 465 LSCHWALQMSFP 476 (758)
T ss_pred hhhHHHHhhcCc
Confidence 555544444444
No 281
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.46 E-value=0.029 Score=41.13 Aligned_cols=46 Identities=24% Similarity=0.243 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
.+++.+.++..+.|..+...+.+|.-+.....|+++..-.++++.+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 5788999999999999888999888877777788888888887765
No 282
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.41 E-value=0.05 Score=50.11 Aligned_cols=90 Identities=8% Similarity=0.113 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC-HHHHHHHHH
Q 021175 168 LSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK-LDKGISQFE 246 (316)
Q Consensus 168 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~ 246 (316)
.-...|+++....+.+...|.+......+.+.+.+--..|.+++. .+|+++..|..-+.-.+..+. .+.|...+.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~----~Hp~~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLA----KHPNNPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH----hCCCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence 455677778888888888888887777777778888888888888 578888888777776666665 777888888
Q ss_pred HHHHhCCCcHHHHHH
Q 021175 247 TAVKLQPGYVTAWNN 261 (316)
Q Consensus 247 ~al~~~p~~~~~~~~ 261 (316)
++++.+|+++..|..
T Consensus 165 rgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 165 RGLRFNPDSPKLWKE 179 (568)
T ss_pred HHhhcCCCChHHHHH
Confidence 888888887776643
No 283
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.041 Score=52.09 Aligned_cols=100 Identities=11% Similarity=0.196 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 021175 186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDG--DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG 263 (316)
Q Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 263 (316)
.+.+-+.-.++.++|..+++.|...+...+. .+...+....+++.||....+.|.|.+++++|-+.+|.++-.....-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 4556667778889999999999999985443 23344667788999999999999999999999999999988888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc
Q 021175 264 DAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~al~~ 285 (316)
.+....|..++|+.+..+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 8888889999999888877654
No 284
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.38 E-value=0.0085 Score=35.42 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 021175 186 EYFELGAVMLRRKFYPAATKYLLQAIEK 213 (316)
Q Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 213 (316)
++.++|.+|...|++++|.++++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4555555555555555555555555553
No 285
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.43 Score=44.10 Aligned_cols=138 Identities=9% Similarity=0.009 Sum_probs=100.4
Q ss_pred HHhhhHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCcc----------HHHHHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDA---SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQD----------LAQVYNA 227 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~----------~~~~~~~ 227 (316)
..-+.++.|+..|..+.+.-.. .+.+..+++..|.+.|+-+.- .++++. +.|. .+.+++-
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~----y~~ld~---i~p~nt~s~ssq~l~a~~~~v 450 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDL----YKALDL---IGPLNTNSLSSQRLEASILYV 450 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHH----HHHHHh---cCCCCCCcchHHHHHHHHHHH
Confidence 3778899999999999886543 255677899999998775433 334443 2332 3556777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH------HH
Q 021175 228 LGVSYVREGKLDKGISQFETAVKLQPGY------VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR------PR 295 (316)
Q Consensus 228 lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~------~~ 295 (316)
.|...+.++++.||...+++.++..... +.....||.+....|+..++.+..+-++++....++.. ..
T Consensus 451 ~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si 530 (629)
T KOG2300|consen 451 YGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSI 530 (629)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHH
Confidence 8888999999999999999999876221 34566789999999999999998888887755443332 23
Q ss_pred HHHHHhhCCC
Q 021175 296 RDALKDRVPL 305 (316)
Q Consensus 296 l~~l~~~~~~ 305 (316)
+..+++..|+
T Consensus 531 ~~~L~~a~g~ 540 (629)
T KOG2300|consen 531 LTDLYQALGE 540 (629)
T ss_pred HHHHHHHhCc
Confidence 4666777766
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.29 E-value=0.11 Score=40.82 Aligned_cols=85 Identities=14% Similarity=-0.028 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 021175 222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD 301 (316)
Q Consensus 222 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~ 301 (316)
......+..+-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..++...+-.|..+.+.-.++.+..
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 44566667777788999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hCCCC
Q 021175 302 RVPLY 306 (316)
Q Consensus 302 ~~~~~ 306 (316)
.++|.
T Consensus 90 ~~~D~ 94 (160)
T PF09613_consen 90 ALGDP 94 (160)
T ss_pred HcCCh
Confidence 88874
No 287
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.28 E-value=0.011 Score=34.84 Aligned_cols=29 Identities=21% Similarity=0.494 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 021175 223 QVYNALGVSYVREGKLDKGISQFETAVKL 251 (316)
Q Consensus 223 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 251 (316)
.++.++|.+|..+|++++|.+++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45667777777777777777777777654
No 288
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.20 E-value=0.65 Score=42.62 Aligned_cols=122 Identities=11% Similarity=0.025 Sum_probs=82.7
Q ss_pred HHHHHHhhh-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHHhc--------CCCCccHHHHH
Q 021175 157 IRQVLVRRE-LDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATK--YLLQAIEKW--------DGDDQDLAQVY 225 (316)
Q Consensus 157 ~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~--------~~~~p~~~~~~ 225 (316)
+.++.+.|. -++|+..++.+++..|.+..+-+..-. +-...|.+|.. .+.+.+.+. +++.-.+.+.-
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~--fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eia 463 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL--FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIA 463 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHH
Confidence 445556776 678999999999988887654332211 11222333321 122222210 11223455566
Q ss_pred HHHHH--HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175 226 NALGV--SYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEE 281 (316)
Q Consensus 226 ~~lg~--~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 281 (316)
+.|+. .++.+|+|.++.-+-.=..+++| .+.++..+|.|.....+|++|..++.+
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 66654 46789999999999988999999 899999999999999999999999975
No 289
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.17 E-value=0.14 Score=44.80 Aligned_cols=127 Identities=14% Similarity=0.116 Sum_probs=95.7
Q ss_pred HHhhhHHHHHHHHHHHHHcC----CCC----HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcCC------CCcc----H
Q 021175 161 LVRRELDLSAKELQEQVRSG----DAS----ATEYFELGAVMLRRK-FYPAATKYLLQAIEKWDG------DDQD----L 221 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~----p~~----~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~------~~p~----~ 221 (316)
..+|+.+.|...+.|+-... |+. ++.+++.|......+ ++++|..+++++.+..+. ..|+ .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 37999999999999986644 332 568889999999999 999999999999998532 2222 2
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175 222 AQVYNALGVSYVREGKLD---KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287 (316)
Q Consensus 222 ~~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 287 (316)
..++..++.+|...+.++ +|....+.+-.-.|+.+..+...=.+..+.++.+++.+.+.+.+..-+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 456677899998887765 455555666666788787775555555558999999999999887544
No 290
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.16 E-value=0.14 Score=38.91 Aligned_cols=83 Identities=14% Similarity=0.134 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 021175 181 DASATEYFELGAVMLRRKF---YPAATKYLLQAIEKWDGDDQ-DLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYV 256 (316)
Q Consensus 181 p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 256 (316)
.-.....++++.++....+ -.+.+..++..++. .+| ..-++.+.|+..+++.|+|+++..+.+..++..|++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~---~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS---AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh---cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 3356678889998887654 45678888888851 233 4567888899999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 021175 257 TAWNNLGDAY 266 (316)
Q Consensus 257 ~~~~~lg~~~ 266 (316)
++.-..-.+.
T Consensus 106 Qa~~Lk~~ie 115 (149)
T KOG3364|consen 106 QALELKETIE 115 (149)
T ss_pred HHHHHHHHHH
Confidence 8765443333
No 291
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.16 E-value=0.069 Score=39.17 Aligned_cols=89 Identities=9% Similarity=0.060 Sum_probs=72.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcC----C-------hHHHHHHHHHHHHhcCCCCccHHHH
Q 021175 159 QVLVRRELDLSAKELQEQVRSGDASA---TEYFELGAVMLRRK----F-------YPAATKYLLQAIEKWDGDDQDLAQV 224 (316)
Q Consensus 159 ~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g----~-------~~~A~~~~~~al~~~~~~~p~~~~~ 224 (316)
.++.+|++-+|++..++.+...+++. ..+..-|.++.... + .-.|+++|.++.. +.|..+..
T Consensus 5 ~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~----Lsp~~A~~ 80 (111)
T PF04781_consen 5 DYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE----LSPDSAHS 80 (111)
T ss_pred HHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc----cChhHHHH
Confidence 35589999999999999999888765 67778888876542 2 2357888888888 79999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 021175 225 YNALGVSYVREGKLDKGISQFETAVKL 251 (316)
Q Consensus 225 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 251 (316)
.+.+|.-+-...-|+++..-.++++.+
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 999998877777888888888888865
No 292
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.13 E-value=0.14 Score=49.29 Aligned_cols=132 Identities=21% Similarity=0.242 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHHHcC---
Q 021175 166 LDLSAKELQEQVRSGDASATEYFELGAVMLRR-----KFYPAATKYLLQAIEKWDG-DDQDLAQVYNALGVSYVREG--- 236 (316)
Q Consensus 166 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~-~~p~~~~~~~~lg~~~~~~g--- 236 (316)
...+...++.+-+. .+..+...+|.++..- +|.+.|+.+++.+.+.+.. .....+.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 45677777766554 4677788888888764 7899999999999871000 11225557889999998843
Q ss_pred --CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175 237 --KLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKK---DLKSALKAFEEVLLFDPNNKVARPRRDALKDRV 303 (316)
Q Consensus 237 --~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~ 303 (316)
+++.|..+|.++-+. +++.+.+.+|.++..-. +...|.++|..|.+ -.+..+...++.++..-
T Consensus 306 ~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELG 373 (552)
T ss_pred cccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhC
Confidence 788999999999875 45678889999998765 67899999999876 46788899998887654
No 293
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.11 E-value=0.085 Score=48.65 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCChhHH
Q 021175 219 QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKD-LKSALKAFEEVLLFDPNNKVAR 293 (316)
Q Consensus 219 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~ 293 (316)
+.+...|.+......+.+.+.+--..|.+++..+|++++.|..-+.-.+.-+. .+.|...+.++++.+|+++..|
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 33444444444444444445555555555555555555555555544444333 4555555555555555555444
No 294
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.08 E-value=0.13 Score=43.07 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHHHHHc----C-C--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---------CCccHHHHHH
Q 021175 163 RRELDLSAKELQEQVRS----G-D--ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG---------DDQDLAQVYN 226 (316)
Q Consensus 163 ~~~~~~A~~~~~~al~~----~-p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------~~p~~~~~~~ 226 (316)
...+++|++.|.-++-. . + ..+..+..+|.+|...|+.+....++++|++.+.. ..-+.....+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 34455566555554431 1 1 23667888999999999866555555555543211 1224567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 021175 227 ALGVSYVREGKLDKGISQFETAVKLQPG 254 (316)
Q Consensus 227 ~lg~~~~~~g~~~~A~~~~~~al~~~p~ 254 (316)
.+|.+..+.|++++|.++|.+++.....
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999985443
No 295
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.08 E-value=0.26 Score=44.67 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=64.4
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC----------------------CCccH---HHHHHHHH
Q 021175 175 EQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG----------------------DDQDL---AQVYNALG 229 (316)
Q Consensus 175 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----------------------~~p~~---~~~~~~lg 229 (316)
..++.+|-+.+++..++.++..+|+.+.|.+..++|+-.++. ..+.+ -.+.+...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 346789999999999999999999999999999999864320 11222 33445566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-c
Q 021175 230 VSYVREGKLDKGISQFETAVKLQPG-Y 255 (316)
Q Consensus 230 ~~~~~~g~~~~A~~~~~~al~~~p~-~ 255 (316)
....++|-+..|.++.+-.+.++|. |
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~D 137 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDED 137 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCC
Confidence 7788899999999999999999998 5
No 296
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.05 E-value=0.053 Score=38.90 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=37.1
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCc-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 021175 195 LRRKFYPAATKYLLQAIEKWDGDDQ-----DLAQVYNALGVSYVREGKLDKGISQFETAVKLQ 252 (316)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 252 (316)
.+.|+|.+|.+.+.+..+....... ....+..++|.++...|++++|++.+++++++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4566777776666666654322111 234556677777777888888888888877754
No 297
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.03 E-value=0.038 Score=50.67 Aligned_cols=130 Identities=9% Similarity=0.070 Sum_probs=100.8
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175 160 VLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD 239 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~ 239 (316)
....|+...|-+....+++..|..++.-...+.+....|+|+.|.+....+-.. +... ..+.--+-...+..|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~---~~s~-~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI---IGTT-DSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh---hcCC-chHHHHHHHhhhchhhHH
Confidence 446788888888999999999999999999999999999999998887665553 1222 222333445577889999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 021175 240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR 293 (316)
Q Consensus 240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 293 (316)
+|...-+-.+...-.++++..--+..-.++|-+++|..++++.+.++|.....+
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 999988888876667777766666666778889999999999999998654444
No 298
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.02 E-value=0.4 Score=42.81 Aligned_cols=112 Identities=15% Similarity=0.123 Sum_probs=86.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175 170 AKELQEQVRSGDASATEYFELGAVMLRRKF------------YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK 237 (316)
Q Consensus 170 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~ 237 (316)
...+.+.++.+|++.++|..+.......-. .+.-+..|++|++ .+|++...+..+=....+..+
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~----~np~~~~L~l~~l~~~~~~~~ 80 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALK----HNPDSERLLLGYLEEGEKVWD 80 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhCC
Confidence 356788899999999999999876655432 4567889999999 588888888877777788889
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhc
Q 021175 238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEK---KKDLKSALKAFEEVLLF 285 (316)
Q Consensus 238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~ 285 (316)
.++..+-+++++..+|++...|..+-..... .-.+++-...|.++++.
T Consensus 81 ~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 81 SEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 9999999999999999998877655443332 33567777777777764
No 299
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.01 E-value=0.11 Score=50.76 Aligned_cols=134 Identities=13% Similarity=0.110 Sum_probs=89.4
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
..|..++|...|++.-+ +-.+-..|...|.+++|.+..+.- ..-.--..|++.+.-+...++.+.|
T Consensus 812 eLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~------DRiHLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETK------DRIHLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhc------cceehhhhHHHHHHHHHhhccHHHH
Confidence 44555555555555432 233445566677777776654322 1223456889999999999999999
Q ss_pred HHHHHHHH----------HhCCC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------
Q 021175 242 ISQFETAV----------KLQPG----------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLF---------------- 285 (316)
Q Consensus 242 ~~~~~~al----------~~~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------- 285 (316)
+++|+++- .-+|. +...|..-|......|+.+.|+.+|..+-..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kA 957 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKA 957 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHH
Confidence 99998853 22333 3456677888899999999999999887543
Q ss_pred -----CCCChhHHHHHHHHHhhCCCCCCC
Q 021175 286 -----DPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 286 -----~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
...+..+-+.++..|...|+..+|
T Consensus 958 a~iA~esgd~AAcYhlaR~YEn~g~v~~A 986 (1416)
T KOG3617|consen 958 ARIAEESGDKAACYHLARMYENDGDVVKA 986 (1416)
T ss_pred HHHHHhcccHHHHHHHHHHhhhhHHHHHH
Confidence 234555666777777777766443
No 300
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.92 E-value=0.016 Score=48.12 Aligned_cols=57 Identities=23% Similarity=0.257 Sum_probs=36.2
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 021175 195 LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY 255 (316)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 255 (316)
.+.++.+.|.+.|.++++ +.|+...-|+.+|....+.|+.+.|.+.|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~----lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALE----LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhh----cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345566666666666666 466666666666666666666666666666666666654
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.83 E-value=0.15 Score=39.49 Aligned_cols=74 Identities=11% Similarity=-0.000 Sum_probs=66.3
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLD 239 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~ 239 (316)
..++.+++...+...--..|+.+.....-|.++...|+|++|+..++...+ ..+..+.+.-.++.|+..+||.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~----~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLS----SAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc----cCCCchHHHHHHHHHHHhcCChH
Confidence 578899999999988889999999999999999999999999999999998 46677778888899999998875
No 302
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.0073 Score=53.07 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 021175 221 LAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALK 300 (316)
Q Consensus 221 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~ 300 (316)
-...+.+++.+-...+.+..|+..-..+++.+++...+++..++.+....++++|++.++.+....|++......+....
T Consensus 274 r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 274 RFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred ccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 34566778888899999999999999999989999999999999999999999999999999999999998888887777
Q ss_pred hhCCCC
Q 021175 301 DRVPLY 306 (316)
Q Consensus 301 ~~~~~~ 306 (316)
+...++
T Consensus 354 ~~~~~~ 359 (372)
T KOG0546|consen 354 QKKKQY 359 (372)
T ss_pred hHHHHH
Confidence 666655
No 303
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.75 E-value=0.32 Score=49.32 Aligned_cols=128 Identities=17% Similarity=0.124 Sum_probs=98.1
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHc----C---ChHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 021175 160 VLVRRELDLSAKELQEQVRSGDAS---ATEYFELGAVMLRR----K---FYPAATKYLLQAIEKWDGDDQDLAQVYNALG 229 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~----g---~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg 229 (316)
++..+.|++|+..|++.-...|.. -++.+..|.....+ | .+++|+..|++.-. .|.-+-=|...+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 559 (932)
T PRK13184 485 FLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-----GVGAPLEYLGKA 559 (932)
T ss_pred HHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-----CCCCchHHHhHH
Confidence 447889999999999999999865 45778888877653 2 46777777777765 677777888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 021175 230 VSYVREGKLDKGISQFETAVKLQPGYVTAW-------NNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARP 294 (316)
Q Consensus 230 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 294 (316)
.+|.++|+++|-+++|.-|++..|+++..- +.+=++... +...|....--++..-|.......
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 629 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEKISSRE 629 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcccccchH
Confidence 999999999999999999999999986533 333333332 335677888888999898655544
No 304
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.19 Score=42.99 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175 222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL 299 (316)
Q Consensus 222 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l 299 (316)
.....++=..+...++++.|..+.++.+.++|+++.-+...|.+|.++|.+.-|++.++..++.-|+++.+-.....+
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 345556677888999999999999999999999999999999999999999999999999999999988776554443
No 305
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.63 Score=39.69 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=100.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYP-AATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
..+..+-++++.+.++.+|.+-..|...-.+....|++. .-++..++.+. .+..+..+|...-.+...-+.++.-
T Consensus 91 ~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~----~DaKNYHaWshRqW~~r~F~~~~~E 166 (318)
T KOG0530|consen 91 MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLD----DDAKNYHAWSHRQWVLRFFKDYEDE 166 (318)
T ss_pred HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHh----ccccchhhhHHHHHHHHHHhhHHHH
Confidence 345667777888888888888888888877777777777 66777777777 5777777777777777777888888
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175 242 ISQFETAVKLQPGYVTAWNNLGDAYEK-KK-----DLKSALKAFEEVLLFDPNNKVARPRRDALKDR 302 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~~~lg~~~~~-~g-----~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~ 302 (316)
+.+..+.++.+-.+-.+|...=.+... .| ..+.-+.+..+.+.+.|++..+|..|.-++..
T Consensus 167 L~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 167 LAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 888888887776666666543222211 22 23556678889999999999999999888775
No 306
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.36 Score=46.03 Aligned_cols=94 Identities=12% Similarity=0.062 Sum_probs=81.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 021175 155 FVIRQVLVRRELDLSAKELQEQVRSGDAS------ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNAL 228 (316)
Q Consensus 155 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~l 228 (316)
..+...++.++|..+++.|...++.-|.+ +....++..+|....+.|.|.+++++|-+ .+|.++-.....
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~----~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE----VDRQSPLCQLLM 434 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh----hccccHHHHHHH
Confidence 33445558999999999999999877754 56778899999999999999999999999 799999988888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Q 021175 229 GVSYVREGKLDKGISQFETAVKLQ 252 (316)
Q Consensus 229 g~~~~~~g~~~~A~~~~~~al~~~ 252 (316)
-.+....|.-++|+....+.....
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhh
Confidence 889999999999999988877643
No 307
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.18 E-value=0.28 Score=42.53 Aligned_cols=67 Identities=19% Similarity=0.277 Sum_probs=59.5
Q ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 219 QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 219 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
.....++..++..+...|+++.+++.+++.+..+|.+-..|..+-..|...|+...|+..|++.-+.
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3556788888999999999999999999999999999999999999999999999999999887663
No 308
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.11 E-value=0.28 Score=35.05 Aligned_cols=57 Identities=18% Similarity=0.115 Sum_probs=46.2
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 021175 160 VLVRRELDLSAKELQEQVRSGDA---------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG 216 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 216 (316)
.+..+++.+|.+.+.+..+.... ...+..++|.++...|++++|++.+++++++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 45789999998888887764321 2457788999999999999999999999997554
No 309
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.07 E-value=0.097 Score=45.41 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR 302 (316)
Q Consensus 241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~ 302 (316)
|..+|++|+.+.|++...|+.+|.++...|+.-+|+-+|-+++....-.+.+..++..+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 44555666666666666666666666556666666655555555444445555555555544
No 310
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.97 E-value=1.4 Score=39.31 Aligned_cols=120 Identities=8% Similarity=-0.009 Sum_probs=92.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH---HHcCCHH
Q 021175 163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY---VREGKLD 239 (316)
Q Consensus 163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~---~~~g~~~ 239 (316)
..-.+..+..+++|++.+|++...+..+-....+..+.++..+-+++++. .+|++...|...=... +..-.++
T Consensus 44 ~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~----~~~~~~~LW~~yL~~~q~~~~~f~v~ 119 (321)
T PF08424_consen 44 RALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF----KNPGSPELWREYLDFRQSNFASFTVS 119 (321)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----HCCCChHHHHHHHHHHHHHhccCcHH
Confidence 44556788999999999999999999888888888899999999999999 5888777775432222 2233577
Q ss_pred HHHHHHHHHHHhCCC------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 021175 240 KGISQFETAVKLQPG------------------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFD 286 (316)
Q Consensus 240 ~A~~~~~~al~~~p~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 286 (316)
+....|.++++.-.. ...+..++.....+.|..+.|+..++-.++++
T Consensus 120 ~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 120 DVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 788888777763210 13455677777889999999999999999986
No 311
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.96 E-value=1 Score=42.75 Aligned_cols=122 Identities=7% Similarity=-0.072 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Q 021175 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ-PGYVTAWNNL 262 (316)
Q Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 262 (316)
-..|..........|+++...-.|++++- .-....+.|...+.-....|+.+-|-..+..+.++. |+.+..+..-
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli----~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~ 372 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLI----PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE 372 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHh----HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 45677777777889999999999999998 566788899999999999999999999999999875 6678888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC
Q 021175 263 GDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV 309 (316)
Q Consensus 263 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A 309 (316)
+..-...|+++.|...+++..+--|+...+-.....+..+.|+.+++
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~ 419 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDA 419 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhh
Confidence 88888999999999999999988899888887777788888876654
No 312
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.92 E-value=0.11 Score=53.20 Aligned_cols=148 Identities=16% Similarity=0.121 Sum_probs=111.0
Q ss_pred HHHhhhHHHHHH------HHHHH-HHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC----CCccHHHHHHHH
Q 021175 160 VLVRRELDLSAK------ELQEQ-VRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG----DDQDLAQVYNAL 228 (316)
Q Consensus 160 ~~~~~~~~~A~~------~~~~a-l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~p~~~~~~~~l 228 (316)
....+.+.++.+ .+... -...|+....+..++..+...|++++|+..-+++.-.... ..|+....+.++
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344555665555 44422 2356788899999999999999999999999888754332 467888899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------ChhH
Q 021175 229 GVSYVREGKLDKGISQFETAVKL--------QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN--------NKVA 292 (316)
Q Consensus 229 g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a 292 (316)
+...+..++...|...+.++..+ .|.-+....+++.++...++++.|+++.+.|+..+-. ....
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 99999999999999999998875 3566777789999999999999999999999986432 2334
Q ss_pred HHHHHHHHhhCCCCC
Q 021175 293 RPRRDALKDRVPLYK 307 (316)
Q Consensus 293 ~~~l~~l~~~~~~~~ 307 (316)
+..++++....++++
T Consensus 1102 ~~~~a~l~~s~~dfr 1116 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFR 1116 (1236)
T ss_pred HHHHHHHHhhhHHHH
Confidence 445555555554443
No 313
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=1.4 Score=37.69 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=65.6
Q ss_pred hhhHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cC----
Q 021175 163 RRELD-LSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR-EG---- 236 (316)
Q Consensus 163 ~~~~~-~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~-~g---- 236 (316)
.|+.. .-++..++++..+..+-.+|...-.+...-+.|+.-+.+..+.++ .+-.+-.+|+..=.+... .|
T Consensus 125 l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle----~Di~NNSAWN~Ryfvi~~~~~~~~~ 200 (318)
T KOG0530|consen 125 LGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLE----EDIRNNSAWNQRYFVITNTKGVISK 200 (318)
T ss_pred hcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH----HhhhccchhheeeEEEEeccCCccH
Confidence 34554 556677777777777777777777777777778888887777777 344444555443222222 11
Q ss_pred -CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 021175 237 -KLDKGISQFETAVKLQPGYVTAWNNLGDAYEK 268 (316)
Q Consensus 237 -~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 268 (316)
..+.-+.+..+.+.+.|++..+|..|.-++..
T Consensus 201 ~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 201 AELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 23344566677777888888888877776665
No 314
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.72 E-value=0.18 Score=46.88 Aligned_cols=92 Identities=10% Similarity=-0.047 Sum_probs=78.9
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRR---KFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK 237 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~ 237 (316)
+..+.+..++..|.+++...|.....+.+.+.++++. |+--.|+.--..|++ ++|....+++.|+.++...++
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alr----ln~s~~kah~~la~aL~el~r 460 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALR----LNPSIQKAHFRLARALNELTR 460 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhcc----CChHHHHHHHHHHHHHHHHhh
Confidence 3567788899999999999999999999999999886 444556666667777 799999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcH
Q 021175 238 LDKGISQFETAVKLQPGYV 256 (316)
Q Consensus 238 ~~~A~~~~~~al~~~p~~~ 256 (316)
+.+|++....+....|.+.
T Consensus 461 ~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 461 YLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHhhhhHHHHhhcCchhh
Confidence 9999999988888888553
No 315
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.57 E-value=0.46 Score=32.51 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH---HHHHHcCCHHHHHHHHHHHHhc
Q 021175 225 YNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLG---DAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 225 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~~~g~~~~A~~~~~~al~~ 285 (316)
...-|.-++..++.++|+..++++++..++..+.+..+| .+|...|++.+.+++-.+-+++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566778888888888888888777665554444 5677788888877766554443
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.55 E-value=1 Score=36.94 Aligned_cols=73 Identities=22% Similarity=0.245 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHH
Q 021175 200 YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPG----YVTAWNNLGDAYEKKKDLKSA 275 (316)
Q Consensus 200 ~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A 275 (316)
-++|...|-++-.. ..-++++..+.+|..|. ..+.++|+..+.+++++.+. +++.+..|+.+|.++|++++|
T Consensus 122 d~~A~~~fL~~E~~---~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGT---PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCC---CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 35566666555441 12255667777776554 66777788888888876543 367777788888888887777
Q ss_pred H
Q 021175 276 L 276 (316)
Q Consensus 276 ~ 276 (316)
.
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 5
No 317
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.53 E-value=1.1 Score=40.76 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=63.9
Q ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCC------------c---HHHHHHHHHHHH
Q 021175 217 DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL--------------QPG------------Y---VTAWNNLGDAYE 267 (316)
Q Consensus 217 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------~p~------------~---~~~~~~lg~~~~ 267 (316)
.+|.+...+..++.++..+|+.+.|.+.+++|+-. ++. + ..+.+.......
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999732 111 1 235667778888
Q ss_pred HcCCHHHHHHHHHHHHhcCCC-ChhHH
Q 021175 268 KKKDLKSALKAFEEVLLFDPN-NKVAR 293 (316)
Q Consensus 268 ~~g~~~~A~~~~~~al~~~p~-~~~a~ 293 (316)
+.|-+.-|.++.+-.+.++|. |+-.-
T Consensus 115 ~RG~~rTAlE~~KlLlsLdp~~DP~g~ 141 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSLDPDEDPLGV 141 (360)
T ss_pred hcCcHHHHHHHHHHHHhcCCCCCcchh
Confidence 999999999999999999999 66443
No 318
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.41 E-value=0.18 Score=29.03 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCC
Q 021175 224 VYNALGVSYVREGKLDKGISQ--FETAVKLQP 253 (316)
Q Consensus 224 ~~~~lg~~~~~~g~~~~A~~~--~~~al~~~p 253 (316)
.++.+|..+..+|++++|++. |+-+..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344455555555555555555 224444444
No 319
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.37 E-value=0.059 Score=28.41 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=8.5
Q ss_pred HHHHHHHHHcCCHHHHHHHH
Q 021175 226 NALGVSYVREGKLDKGISQF 245 (316)
Q Consensus 226 ~~lg~~~~~~g~~~~A~~~~ 245 (316)
+++|.++...|++++|...+
T Consensus 5 ~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 34444444444444444433
No 320
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.36 E-value=1.9 Score=34.53 Aligned_cols=103 Identities=9% Similarity=0.063 Sum_probs=76.2
Q ss_pred HHhhhHHHHHHHHHHHHHcCCC--C--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175 161 LVRRELDLSAKELQEQVRSGDA--S--ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG 236 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~--~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g 236 (316)
..+|+...|+..|.+.-...|- . -.+...-+.++...|.|++-....+..-. .-+|.-..+.-.||..-++.|
T Consensus 105 a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~---d~n~mR~sArEALglAa~kag 181 (221)
T COG4649 105 AQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG---DGNPMRHSAREALGLAAYKAG 181 (221)
T ss_pred hhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccC---CCChhHHHHHHHHhHHHHhcc
Confidence 3899999999999997665442 1 23455666778889999987766655433 146777778888999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 021175 237 KLDKGISQFETAVKLQPGYVTAWNNLGDAYE 267 (316)
Q Consensus 237 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 267 (316)
++.+|.+.|++... +.+.+..-.+.+++..
T Consensus 182 d~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 182 DFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred chHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 99999999999877 5555555555555544
No 321
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.28 E-value=0.13 Score=44.78 Aligned_cols=82 Identities=6% Similarity=0.151 Sum_probs=44.3
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCC
Q 021175 175 EQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNA-LGVSYVREGKLDKGISQFETAVKLQP 253 (316)
Q Consensus 175 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p 253 (316)
++-...|+++..|...+....+.|-|.+--..|.++++ .+|.+.+.|.. -+.-+...++.+.+...+.++++.+|
T Consensus 98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~----khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLT----KHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 33344455555555555555555555555555555555 45555555544 33344455555555555555555555
Q ss_pred CcHHHHH
Q 021175 254 GYVTAWN 260 (316)
Q Consensus 254 ~~~~~~~ 260 (316)
+.+..|+
T Consensus 174 ~~p~iw~ 180 (435)
T COG5191 174 RSPRIWI 180 (435)
T ss_pred CCchHHH
Confidence 5555443
No 322
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=2.4 Score=38.44 Aligned_cols=146 Identities=16% Similarity=0.077 Sum_probs=99.4
Q ss_pred HhhhHHHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CCccHHHHHHHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGD---------ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG--DDQDLAQVYNALGV 230 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~p~~~~~~~~lg~ 230 (316)
.++++.+|.+.-...+..-. -.+..|+.+..++...|+...-...+..-+....- .....+...+.+=.
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 56777777776666544211 12567888888888889877766666665553221 22334555666788
Q ss_pred HHHHcCCHHHHHHHHHHHHHh--CC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH------HHHHHHH
Q 021175 231 SYVREGKLDKGISQFETAVKL--QP--GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVAR------PRRDALK 300 (316)
Q Consensus 231 ~~~~~g~~~~A~~~~~~al~~--~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~------~~l~~l~ 300 (316)
.|...+.|++|.+...+..-- +. ..+...+.+|.+..-+++|..|.+++-+|++..|++...- ..+-.+.
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ 297 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVE 297 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHH
Confidence 899999999999988776621 11 2255677899999999999999999999999999853322 2223345
Q ss_pred hhCCCCC
Q 021175 301 DRVPLYK 307 (316)
Q Consensus 301 ~~~~~~~ 307 (316)
..+|++.
T Consensus 298 ll~geiP 304 (493)
T KOG2581|consen 298 LLLGEIP 304 (493)
T ss_pred HHcCCCc
Confidence 5566654
No 323
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.01 E-value=0.32 Score=49.34 Aligned_cols=108 Identities=16% Similarity=0.217 Sum_probs=81.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCcHHHHHH
Q 021175 189 ELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE----G---KLDKGISQFETAVKLQPGYVTAWNN 261 (316)
Q Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~ 261 (316)
...+++...+.|++|+..|++....+|. ...-.++.+..|.+...+ | .+++|+..|++.- -.|.-+--|..
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 557 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPG-RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG 557 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCC-cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence 3445777888999999999999986553 445677889999888764 2 3566666665532 24555666777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 021175 262 LGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDA 298 (316)
Q Consensus 262 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~ 298 (316)
.+.+|..+|++++-+++|.-+++.-|++|+.-.....
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDH 594 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 8889999999999999999999999999877554433
No 324
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.77 E-value=0.1 Score=45.30 Aligned_cols=78 Identities=9% Similarity=0.077 Sum_probs=59.9
Q ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 021175 218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNN-LGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPR 295 (316)
Q Consensus 218 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 295 (316)
.|+++..|...+..-.+.|-|.+--..|.++++.+|.+++.|.. -+.-+...++++.+...+.++++++|+++..|..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 67777777777776777778888888888888888888887766 3344566788888888888888888888777654
No 325
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.73 E-value=2.6 Score=40.05 Aligned_cols=113 Identities=11% Similarity=-0.016 Sum_probs=101.7
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
...|+++...-.|++.+-........|...+.-....|+.+-|...+..+.+. ..|..+..+..-+..-...|+++.
T Consensus 308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i---~~k~~~~i~L~~a~f~e~~~n~~~ 384 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI---HVKKTPIIHLLEARFEESNGNFDD 384 (577)
T ss_pred hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh---cCCCCcHHHHHHHHHHHhhccHHH
Confidence 36788889999999998888889999999999999999999999999999997 678888888888889999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 021175 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSAL 276 (316)
Q Consensus 241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 276 (316)
|...+++..+-.|+...+-.........+|+.+.+.
T Consensus 385 A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 385 AKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 999999999988999888888888888899988887
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.63 E-value=0.1 Score=27.51 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175 257 TAWNNLGDAYEKKKDLKSALKAFEE 281 (316)
Q Consensus 257 ~~~~~lg~~~~~~g~~~~A~~~~~~ 281 (316)
.+.+++|.++..+|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678999999999999999988763
No 327
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.58 E-value=3.3 Score=40.53 Aligned_cols=127 Identities=14% Similarity=0.116 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcCC----CCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhcCCC--CccHHHHHHHHHHHHHHcCCH
Q 021175 166 LDLSAKELQEQVRSGD----ASATEYFELGAVML-RRKFYPAATKYLLQAIEKWDGD--DQDLAQVYNALGVSYVREGKL 238 (316)
Q Consensus 166 ~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~--~p~~~~~~~~lg~~~~~~g~~ 238 (316)
...|+.+++-+++..+ ..+.++..+|.++. ...++++|+.+++|++.+..+. ......+...++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 4567777777774222 24678999999887 7899999999999999876531 111244566678889888888
Q ss_pred HHHHHHHHHHHHhCCC----cHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcC--CCChhHH
Q 021175 239 DKGISQFETAVKLQPG----YVTAWNNLG--DAYEKKKDLKSALKAFEEVLLFD--PNNKVAR 293 (316)
Q Consensus 239 ~~A~~~~~~al~~~p~----~~~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~ 293 (316)
. |...+++.++...+ .+...+.+- ..+...+|+..|.+.+++..... ++++...
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 8 99999999987554 222333333 22223379999999999988875 3454443
No 328
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.54 E-value=1.3 Score=39.14 Aligned_cols=119 Identities=14% Similarity=0.131 Sum_probs=75.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-------------------CC
Q 021175 158 RQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG-------------------DD 218 (316)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------------------~~ 218 (316)
+...+..+..+-++....+++++|+.+.++..++.-- ..-..+|++.+++|++..+. ..
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rR 269 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRR 269 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhc
Confidence 3344666777788888899999999999998887632 33456788888888773210 00
Q ss_pred ccHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHH
Q 021175 219 QDLAQ--VYNALGVSYVREGKLDKGISQFETAVKLQPGY--VTAWNNLGDAYEKKKDLKSALKA 278 (316)
Q Consensus 219 p~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~ 278 (316)
..+.. .-..++.|-.++|+..||++.++...+-.|-. ..++-||-+......-|.+-...
T Consensus 270 Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqav 333 (556)
T KOG3807|consen 270 DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAV 333 (556)
T ss_pred ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122 22346777777777777777777777766632 34555666666555444443333
No 329
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.52 E-value=0.15 Score=29.71 Aligned_cols=27 Identities=26% Similarity=0.572 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175 224 VYNALGVSYVREGKLDKGISQFETAVK 250 (316)
Q Consensus 224 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 250 (316)
++..||.+-...++|++|++.|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444445555555555544444
No 330
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=93.51 E-value=1.1 Score=38.32 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcC
Q 021175 199 FYPAATKYLLQAIEKWDGDD--QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY------VTAWNNLGDAYEKKK 270 (316)
Q Consensus 199 ~~~~A~~~~~~al~~~~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g 270 (316)
.-...++.+.+|++.+.... .-.......+|..|+..|++++|.+.|+.+....... ..+...+-.|+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 44566888888888654322 2234556679999999999999999999997665433 566778889999999
Q ss_pred CHHHHHHHHHHHH
Q 021175 271 DLKSALKAFEEVL 283 (316)
Q Consensus 271 ~~~~A~~~~~~al 283 (316)
+.++.+.+.-+.+
T Consensus 233 ~~~~~l~~~leLl 245 (247)
T PF11817_consen 233 DVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9988877655443
No 331
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.46 E-value=0.37 Score=43.69 Aligned_cols=53 Identities=11% Similarity=0.006 Sum_probs=27.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 021175 189 ELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQF 245 (316)
Q Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 245 (316)
.+..+|.+.++.+-|+.+-.+.|- .+|.+..-+...+.++..+.+|.+|-..+
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~----lnP~~frnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSIN----LNPSYFRNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhh----cCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555 35555555555555555555555544443
No 332
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.39 E-value=3.5 Score=33.29 Aligned_cols=102 Identities=9% Similarity=0.061 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHH
Q 021175 146 LGLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDA---SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLA 222 (316)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~ 222 (316)
.++..++.+|. +.|+.++|.+.|.++.+.... ..+.+.++-.+....+++.....+..++-.......+...
T Consensus 37 ~~~~~l~~~~~-----~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~ 111 (177)
T PF10602_consen 37 MALEDLADHYC-----KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER 111 (177)
T ss_pred HHHHHHHHHHH-----HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence 45666666666 999999999999998876543 4678888889999999999999999999886443222221
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 021175 223 --QVYNALGVSYVREGKLDKGISQFETAVKLQ 252 (316)
Q Consensus 223 --~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 252 (316)
.....-|..+...++|.+|.+.|-.+..-.
T Consensus 112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 233345777888999999999997776544
No 333
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.18 E-value=0.73 Score=39.53 Aligned_cols=73 Identities=15% Similarity=0.079 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 021175 186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNL 262 (316)
Q Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 262 (316)
...++=..+...++++.|..+.++.+. ++|.++.-....|.+|.+.|.+..|++.++..++.-|+++.+-.-.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~----l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir 255 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLD----LNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR 255 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHh----hCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence 344555677888889999999999998 6888888888889999999999999999999888888887665433
No 334
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.14 E-value=4 Score=40.68 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-CC----ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---
Q 021175 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG-DD----QDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY--- 255 (316)
Q Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--- 255 (316)
+..-...+.......++++|.....++....+. .. ...++..-..|.+....|+.++|++..+.++..-|.+
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 455566677778889999999999998876432 11 1223444556888899999999999999999987765
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175 256 --VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDP 287 (316)
Q Consensus 256 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 287 (316)
..++..+|.+..-.|++++|..+.+++.++..
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999988743
No 335
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.11 E-value=0.36 Score=27.76 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhcCCCC
Q 021175 257 TAWNNLGDAYEKKKDLKSALKA--FEEVLLFDPNN 289 (316)
Q Consensus 257 ~~~~~lg~~~~~~g~~~~A~~~--~~~al~~~p~~ 289 (316)
+.++.+|..+..+|++++|++. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5678899999999999999999 55777777754
No 336
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.07 E-value=1.2 Score=30.52 Aligned_cols=63 Identities=17% Similarity=0.102 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVK 250 (316)
Q Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 250 (316)
...-|.-++...+.++|+..++++++.... .|+--.+.-.+..+|...|+|.+.+++--+-++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556777788888888888885432 333444445556677788888887777655444
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.01 E-value=0.88 Score=37.31 Aligned_cols=74 Identities=12% Similarity=0.126 Sum_probs=41.5
Q ss_pred HcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ChhHHHHHHHHHhhCCCCC
Q 021175 234 REGKLDKGISQFETAVKLQP--GYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN----NKVARPRRDALKDRVPLYK 307 (316)
Q Consensus 234 ~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~l~~l~~~~~~~~ 307 (316)
.+-.-++|...|-++-. .| ++++..+.||..|. .-|.++++..+.+++++.+. +++....|+.++...++++
T Consensus 118 sr~~d~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCcHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33333445554433322 22 34666666665554 45666777777777766433 3666666777777776666
Q ss_pred CC
Q 021175 308 GV 309 (316)
Q Consensus 308 ~A 309 (316)
.|
T Consensus 196 ~A 197 (203)
T PF11207_consen 196 QA 197 (203)
T ss_pred hh
Confidence 54
No 338
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.90 E-value=0.31 Score=42.20 Aligned_cols=62 Identities=10% Similarity=0.123 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 021175 169 SAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR 234 (316)
Q Consensus 169 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~ 234 (316)
|+.+|.+|....|+....|+.+|.++...|+.-+|+-+|-+++. .....+.+..||...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~----~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLA----VRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHS----SSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888888888886 233346777777777766
No 339
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.86 E-value=1.7 Score=41.17 Aligned_cols=102 Identities=18% Similarity=0.073 Sum_probs=80.5
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-HHHhcCCCCccHHHHHHHH------HHHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQ-AIEKWDGDDQDLAQVYNAL------GVSYVR 234 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~~~~~p~~~~~~~~l------g~~~~~ 234 (316)
..++...+.......+..+|+...+..+++.+....|....+...+.. +.. ..|.+......+ |.....
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~ 154 (620)
T COG3914 79 PLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEW----LSPDNAEFLGHLIRFYQLGRYLKL 154 (620)
T ss_pred ccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHh----cCcchHHHHhhHHHHHHHHHHHHH
Confidence 456666788888999999999999999999999888777776665555 666 577776655554 888889
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 021175 235 EGKLDKGISQFETAVKLQPGYVTAWNNLGDAYE 267 (316)
Q Consensus 235 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 267 (316)
.|+..++....+++.++.|.++.....+.....
T Consensus 155 l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~ 187 (620)
T COG3914 155 LGRTAEAELALERAVDLLPKYPRVLGALMTARQ 187 (620)
T ss_pred hccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence 999999999999999999998665554444433
No 340
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.80 E-value=0.19 Score=29.30 Aligned_cols=30 Identities=17% Similarity=0.437 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 021175 257 TAWNNLGDAYEKKKDLKSALKAFEEVLLFD 286 (316)
Q Consensus 257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 286 (316)
+++..||.+-...++|++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999874
No 341
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.77 E-value=6.2 Score=34.39 Aligned_cols=160 Identities=11% Similarity=-0.039 Sum_probs=93.8
Q ss_pred hccchHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHc----CCC-------
Q 021175 116 NASENVQMDAVYEIGELFE-LGIQLSYLLLLLGLLGVGTFFVIRQVLVRR-ELDLSAKELQEQVRS----GDA------- 182 (316)
Q Consensus 116 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~----~p~------- 182 (316)
..++.+.|..++..+.... ...+.....+...++ ..+.....++ ++++|...++++.+. .+.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~y-----n~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~ 79 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCY-----NIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG 79 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHH-----HHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcH
Confidence 4456677777887776666 223322222323333 3444455888 999999999999886 221
Q ss_pred ---CHHHHHHHHHHHHHcCChHH---HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-Cc
Q 021175 183 ---SATEYFELGAVMLRRKFYPA---ATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQP-GY 255 (316)
Q Consensus 183 ---~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~ 255 (316)
...++..++.++...+.++. |....+.+.. ..|+.+..+...=.+..+.++.+++.+.+.+.+..-+ ..
T Consensus 80 ~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~----e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e 155 (278)
T PF08631_consen 80 SELRLSILRLLANAYLEWDTYESVEKALNALRLLES----EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE 155 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH----hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc
Confidence 13578889999998887654 3334334433 4666666664333344448999999999999998654 22
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHh
Q 021175 256 VTAWNNLGDAY-EKKKDLKSALKAFEEVLL 284 (316)
Q Consensus 256 ~~~~~~lg~~~-~~~g~~~~A~~~~~~al~ 284 (316)
...-..+..+. ........|..++.+.+.
T Consensus 156 ~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 156 SNFDSILHHIKQLAEKSPELAAFCLDYLLL 185 (278)
T ss_pred chHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 22222122221 112333456666655554
No 342
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.68 E-value=2 Score=40.42 Aligned_cols=120 Identities=8% Similarity=-0.004 Sum_probs=84.2
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 021175 174 QEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQP 253 (316)
Q Consensus 174 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 253 (316)
++-++.+|.+.++|+.+-.-+..+ .+++..+.|++.+. ..|..+.+|.......+..++|+.-.+.|.+++..-=
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~----~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL 84 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN----VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL 84 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhc----cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 667889999999999998877666 89999999999999 6899999999988889999999999999999986433
Q ss_pred CcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCChhHHHHHHHH
Q 021175 254 GYVTAW-NNLGDAYEKKKDLKSALKAFEEVLL-------FDPNNKVARPRRDAL 299 (316)
Q Consensus 254 ~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~-------~~p~~~~a~~~l~~l 299 (316)
+ .+.| ..+..+....|+...+....-++.+ .++.....|......
T Consensus 85 n-lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~F 137 (656)
T KOG1914|consen 85 N-LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINF 137 (656)
T ss_pred h-HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 2 2222 2334444455554443333322222 345555555544433
No 343
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.36 E-value=1.3 Score=40.26 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021175 224 VYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283 (316)
Q Consensus 224 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 283 (316)
+...+..||.++++.+-|+....+.+.++|.+..-+...+.|+..+.+|.+|.+.+--+.
T Consensus 230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 230 IETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999999999999999999999887665554
No 344
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.30 E-value=6.3 Score=38.74 Aligned_cols=15 Identities=20% Similarity=0.209 Sum_probs=8.9
Q ss_pred HhhhHHHHHHHHHHH
Q 021175 162 VRRELDLSAKELQEQ 176 (316)
Q Consensus 162 ~~~~~~~A~~~~~~a 176 (316)
..|+++.|+.+|-++
T Consensus 718 ~~~q~daainhfiea 732 (1636)
T KOG3616|consen 718 QIGQLDAAINHFIEA 732 (1636)
T ss_pred HHHhHHHHHHHHHHh
Confidence 556666666665543
No 345
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.22 E-value=2 Score=44.42 Aligned_cols=126 Identities=15% Similarity=0.110 Sum_probs=101.1
Q ss_pred HHHhhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc----CCCCccHHHHHHH
Q 021175 160 VLVRRELDLSAKELQEQVRS--------GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKW----DGDDQDLAQVYNA 227 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~p~~~~~~~~ 227 (316)
....+++++|+..-.++.-. .|+....+.+++...+..++...|...+.++..+. .+..|..+....+
T Consensus 983 ~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~n 1062 (1236)
T KOG1839|consen 983 SNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFIN 1062 (1236)
T ss_pred HhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhH
Confidence 44788899998887776532 34567789999999999999999999999998863 2357888888899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 228 LGVSYVREGKLDKGISQFETAVKLQPG--------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 228 lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
++.++...++++.|+++.+.|.+.+-. ....+..++..+..+|++..|....+....+
T Consensus 1063 le~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1063 LELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 999999999999999999999986532 2567778888888888888887777666544
No 346
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.90 E-value=1.3 Score=43.20 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHh-----------------CCCc-HHHHHHHHHHHHHcCCHHHHH
Q 021175 221 LAQVYNALGVSYVREGKLDKGISQF------ETAVKL-----------------QPGY-VTAWNNLGDAYEKKKDLKSAL 276 (316)
Q Consensus 221 ~~~~~~~lg~~~~~~g~~~~A~~~~------~~al~~-----------------~p~~-~~~~~~lg~~~~~~g~~~~A~ 276 (316)
....|...+.-.-..|+|.+|.+.| .+|++. .|++ .+.+..+|.-|...|+.+.|.
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae 902 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAE 902 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHH
Confidence 3445555666666667666655544 223322 1222 456778899999999999999
Q ss_pred HHHHHHHh
Q 021175 277 KAFEEVLL 284 (316)
Q Consensus 277 ~~~~~al~ 284 (316)
..|.++-+
T Consensus 903 ~~flea~d 910 (1636)
T KOG3616|consen 903 EHFLEAGD 910 (1636)
T ss_pred HHHHhhhh
Confidence 88877644
No 347
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.84 E-value=0.75 Score=44.90 Aligned_cols=114 Identities=24% Similarity=0.265 Sum_probs=91.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 021175 190 LGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR--EGKLDKGISQFETAVKLQPGYVTAWNNLGDAYE 267 (316)
Q Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 267 (316)
-|+..+..+++.+|.--|..++...|+.++..+....+.+.+++. .|+|.+++.-..-++...|....+....+.+|.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 356677788888887778888876555566777788888888765 578999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175 268 KKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRV 303 (316)
Q Consensus 268 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~ 303 (316)
..++.+-|.+...-....+|++.++-....+++...
T Consensus 139 al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 139 ALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 999999999998888888999877766554444444
No 348
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.66 E-value=1.2 Score=38.60 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 021175 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL 251 (316)
Q Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 251 (316)
...++..++..+...|+++.+++.+++.+. .+|.+...|..+=..|...|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~----~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIE----LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh----cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 356788899999999999999999999999 79999999999999999999999999999887664
No 349
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=91.54 E-value=0.37 Score=42.71 Aligned_cols=105 Identities=16% Similarity=0.131 Sum_probs=82.8
Q ss_pred HHhhhHHHHHHHHHHHHHcCC-----------C--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccH
Q 021175 161 LVRRELDLSAKELQEQVRSGD-----------A--------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDL 221 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p-----------~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~ 221 (316)
..+++++.|...+.++++.-. + ......+++.+-...+.+..|+..-..+++ .++..
T Consensus 233 ~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~----~~~s~ 308 (372)
T KOG0546|consen 233 FKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR----DERSK 308 (372)
T ss_pred hhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc----cChhh
Confidence 367888888888887765211 1 123556777888888999999888888887 68899
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 021175 222 AQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKK 269 (316)
Q Consensus 222 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 269 (316)
..+++..|..+....++++|.+.++.+....|++....-.+..+-...
T Consensus 309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 999999999999999999999999999999999987766555544433
No 350
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.54 E-value=7.4 Score=38.93 Aligned_cols=110 Identities=13% Similarity=0.024 Sum_probs=81.4
Q ss_pred HhhhHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDA---------SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ-DLAQVYNALGVS 231 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p-~~~~~~~~lg~~ 231 (316)
.+.++++|.....++...-+. .+...-..|.+....|+.++|+++.+.++...++..+ ....++..+|.+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 677888888877776654332 1345556677888999999999999999997554222 346678889999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC----c--HHHHHHHHHHHHHcCC
Q 021175 232 YVREGKLDKGISQFETAVKLQPG----Y--VTAWNNLGDAYEKKKD 271 (316)
Q Consensus 232 ~~~~g~~~~A~~~~~~al~~~p~----~--~~~~~~lg~~~~~~g~ 271 (316)
..-+|++++|..+.+++.+.... + ..+....+.+...+|+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999887432 2 3344555777778883
No 351
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.21 E-value=3.9 Score=35.60 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=50.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021175 228 LGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVL 283 (316)
Q Consensus 228 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 283 (316)
.+..|...|.+.+|++..+++++++|-+...+..+-.++..+||--.+.+.|++.-
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 46678889999999999999999999999999999999999999888888877654
No 352
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=11 Score=34.31 Aligned_cols=137 Identities=14% Similarity=0.092 Sum_probs=100.9
Q ss_pred HhhhH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------------cCChHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 021175 162 VRREL-DLSAKELQEQVRSGDASATEYFELGAVMLR------------RKFYPAATKYLLQAIEKWDGDDQDLAQVYNAL 228 (316)
Q Consensus 162 ~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------------~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~l 228 (316)
..|.+ +++++.-.+.+..+|+...+|+..-.++.. ..-.++-+.+...+++ .+|+...+|+.+
T Consensus 40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~----~npksY~aW~hR 115 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALK----VNPKSYGAWHHR 115 (421)
T ss_pred hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHH----hCchhHHHHHHH
Confidence 34444 466777777788888877766654443332 2245667778888888 799999999999
Q ss_pred HHHHHHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175 229 GVSYVREGK--LDKGISQFETAVKLQPGYVTAWNNLGDAYEKK----KDLKSALKAFEEVLLFDPNNKVARPRRDALKDR 302 (316)
Q Consensus 229 g~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~ 302 (316)
..++.+.+. +..=++..+++++.||.+-.+|...=.+.... ....+-+++..+++.-++.|-.+|.....+...
T Consensus 116 ~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~ 195 (421)
T KOG0529|consen 116 KWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLST 195 (421)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 999987764 57889999999999999877776554444332 235677888889998899999998887776654
No 353
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=90.54 E-value=6.3 Score=31.94 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CC--hHHHHHHHHHHHHhcCCCCc
Q 021175 147 GLLGVGTFFVIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRR-----KF--YPAATKYLLQAIEKWDGDDQ 219 (316)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~--~~~A~~~~~~al~~~~~~~p 219 (316)
+++..|.+++....-..++...|+..+..+.. .+.+++..++|.++... ++ ..+|++++.++.++
T Consensus 70 SCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl------ 141 (248)
T KOG4014|consen 70 SCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL------ 141 (248)
T ss_pred HHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC------
Confidence 44555555554434456677788888876655 45677777777776532 23 56788888888763
Q ss_pred cHHHHHHHHHHHHHHc------------------------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC
Q 021175 220 DLAQVYNALGVSYVRE------------------------GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEK----KKD 271 (316)
Q Consensus 220 ~~~~~~~~lg~~~~~~------------------------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~ 271 (316)
++..+.++|+..|+.- ++.+.|.++--+|.+++ ++.+.-|+..+|.. -++
T Consensus 142 ~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kd 219 (248)
T KOG4014|consen 142 EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKD 219 (248)
T ss_pred CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCcc
Confidence 2334444444444422 45566666666666543 35555566666543 234
Q ss_pred HHHHHHHHHHHHhc
Q 021175 272 LKSALKAFEEVLLF 285 (316)
Q Consensus 272 ~~~A~~~~~~al~~ 285 (316)
.++|..+-.++.++
T Consensus 220 e~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 220 EDQAEKYKDRAKEI 233 (248)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666554
No 354
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.40 E-value=6.1 Score=38.67 Aligned_cols=95 Identities=21% Similarity=0.227 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC------cc----------------HHHHHHHHHHHHHHcCCHHHHHH
Q 021175 186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD------QD----------------LAQVYNALGVSYVREGKLDKGIS 243 (316)
Q Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------p~----------------~~~~~~~lg~~~~~~g~~~~A~~ 243 (316)
++..-|......+..++|.++++++++..++.. +. ........+.+..-.+++.+|..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 455666777788888899999999998654311 00 11233456777788999999999
Q ss_pred HHHHHHHhC---CC------cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021175 244 QFETAVKLQ---PG------YVTAWNNLGDAYEKKKDLKSALKAFE 280 (316)
Q Consensus 244 ~~~~al~~~---p~------~~~~~~~lg~~~~~~g~~~~A~~~~~ 280 (316)
..++..+.. |. .+..++..|..+...|+.+.|..+|.
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 998877653 22 37788999999999999999999998
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.40 E-value=1.5 Score=26.48 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=12.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 021175 260 NNLGDAYEKKKDLKSALKAFEEVL 283 (316)
Q Consensus 260 ~~lg~~~~~~g~~~~A~~~~~~al 283 (316)
++++.+|..+|+.+.|.+.+++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 344555555555555555555555
No 356
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.37 E-value=2 Score=36.97 Aligned_cols=129 Identities=14% Similarity=0.148 Sum_probs=82.6
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-----C--------------
Q 021175 161 LVRRELDLSAKELQEQVRSGDASA----TEYFELGAVMLRRKFYPAATKYLLQAIEKWDG-----D-------------- 217 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~-------------- 217 (316)
+...+.++|+..|++.++..++.. .++-.+-.+.++.++|++-.+.|.+.+..... .
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 356678899999999999888653 46777788889999999998888887763210 0
Q ss_pred -------------------CccHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---------cHHHHHHH
Q 021175 218 -------------------DQDLAQVY----NALGVSYVREGKLDKGISQFETAVKL---QPG---------YVTAWNNL 262 (316)
Q Consensus 218 -------------------~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~---~p~---------~~~~~~~l 262 (316)
+..+...| ..||.+|+..++|.+-.+.+++.-+. +.. ..++|..-
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 00111111 24677777777777666665554432 211 12344444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 021175 263 GDAYEKKKDLKSALKAFEEVLLFDPNN 289 (316)
Q Consensus 263 g~~~~~~g~~~~A~~~~~~al~~~p~~ 289 (316)
-++|-.+++-.+-...|++++.+...-
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAI 224 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAI 224 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccC
Confidence 556667777677777888888775543
No 357
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=89.90 E-value=9.3 Score=31.01 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=90.2
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc-
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLR-----RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE- 235 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~- 235 (316)
-++++++|.+.|+.-...+. .+...+.+|..+.. .++...|++.+..+.. .+++.+..++|.++..-
T Consensus 47 i~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~------~n~~~aC~~~gLl~~~g~ 119 (248)
T KOG4014|consen 47 IQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD------ANIPQACRYLGLLHWNGE 119 (248)
T ss_pred HHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc------cCCHHHHhhhhhhhccCc
Confidence 35677888887776555443 56777888876653 4678999999999986 35667778888887743
Q ss_pred ----CC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc------------------------CCHHHHHHHHHHHHhc
Q 021175 236 ----GK--LDKGISQFETAVKLQPGYVTAWNNLGDAYEKK------------------------KDLKSALKAFEEVLLF 285 (316)
Q Consensus 236 ----g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------------------------g~~~~A~~~~~~al~~ 285 (316)
++ ..+|.+++.++.++. +..+.++|...|..- .+.+.|.++--++-++
T Consensus 120 ~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel 197 (248)
T KOG4014|consen 120 KDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL 197 (248)
T ss_pred CCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc
Confidence 33 678999999998764 455566666666543 4567777777777666
Q ss_pred CCCChhHHHHHHHHHhh
Q 021175 286 DPNNKVARPRRDALKDR 302 (316)
Q Consensus 286 ~p~~~~a~~~l~~l~~~ 302 (316)
+++.+-.++.+++..
T Consensus 198 --~~~~aCAN~SrMykl 212 (248)
T KOG4014|consen 198 --DIPQACANVSRMYKL 212 (248)
T ss_pred --CChHHHhhHHHHHHc
Confidence 345666666666544
No 358
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.84 E-value=4.3 Score=44.72 Aligned_cols=116 Identities=14% Similarity=0.124 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCc-----
Q 021175 182 ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ-PGY----- 255 (316)
Q Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~----- 255 (316)
...++|.+.|.+....|+++.|....-+|.+ .. -+.++...|...+.+|+-..|+..+++.+.++ |+.
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e----~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKE----SR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhh----cc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence 3478999999999999999999999999987 23 67889999999999999999999999999764 331
Q ss_pred -----------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCChhHHHHHHHHHhhC
Q 021175 256 -----------VTAWNNLGDAYEKKKDL--KSALKAFEEVLLFDPNNKVARPRRDALKDRV 303 (316)
Q Consensus 256 -----------~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~ 303 (316)
..+....+......|++ ++-++.|+.+.+..|...+.++.++.-+.+.
T Consensus 1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl 1802 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL 1802 (2382)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH
Confidence 22344455555566664 4567899999999998888888888655443
No 359
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.83 E-value=9.3 Score=34.85 Aligned_cols=137 Identities=12% Similarity=0.117 Sum_probs=105.6
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----c
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKF--YPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVR----E 235 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~----~ 235 (316)
.+.-.++-+.....+++.+|+.-.+|+..-.++.+.+. +..=++..+++++ .+|.+-.+|...=.+... .
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~----~D~RNfh~W~YRRfV~~~~~~~~ 162 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALK----QDPRNFHAWHYRRFVVEQAERSR 162 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh----cCcccccchHHHHHHHHHHhccc
Confidence 34466778888999999999999999999999987764 5788889999999 688887777665444433 2
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175 236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEK------KKD------LKSALKAFEEVLLFDPNNKVARPRRDALKDR 302 (316)
Q Consensus 236 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------~g~------~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~ 302 (316)
....+=+++..+++.-++.+..+|.+...+... .|+ ...-++.-..++-.+|++..+|.....+..+
T Consensus 163 ~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 163 NLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred ccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 346777889999999999999999888777662 331 2455677778888899999999876555444
No 360
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.80 E-value=6.9 Score=36.64 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175 219 QDLAQVYNALGVSYVREGKLDKGISQFETAVK 250 (316)
Q Consensus 219 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 250 (316)
.+++..|..||.....+|+++-|.++|+++-+
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 34566888888888888888888888877643
No 361
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.39 E-value=12 Score=31.40 Aligned_cols=55 Identities=16% Similarity=0.035 Sum_probs=46.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 021175 158 RQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIE 212 (316)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 212 (316)
...++.+..++++...++-++.+|.+......+-..+.-.|+|++|..-++-+-+
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3456788888888888888888888888888888888888888888888888877
No 362
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.35 E-value=0.91 Score=27.38 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175 226 NALGVSYVREGKLDKGISQFETAVK 250 (316)
Q Consensus 226 ~~lg~~~~~~g~~~~A~~~~~~al~ 250 (316)
++++.+|..+|+++.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5788999999999999999999885
No 363
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.20 E-value=2.3 Score=35.41 Aligned_cols=60 Identities=17% Similarity=0.120 Sum_probs=42.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 021175 192 AVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY 255 (316)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 255 (316)
..+.+.+..++|+...+.-++ .+|.+......+=..+.-.|+|++|...++-+-++.|++
T Consensus 9 seLL~~~sL~dai~~a~~qVk----akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVK----AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHh----cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 345566677777777777777 577777766666667777777777777777777777765
No 364
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=88.48 E-value=23 Score=33.68 Aligned_cols=137 Identities=18% Similarity=0.108 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH-HHHcCCHHHHH
Q 021175 165 ELDLSAKELQEQVRSGDAS-ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVS-YVREGKLDKGI 242 (316)
Q Consensus 165 ~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~-~~~~g~~~~A~ 242 (316)
.++...+.+.+.+.+...+ .-++.++-+.-.+..-.+.|...|.+|-+ ..-....++..-|.+ |...++.+-|.
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~----~~r~~hhVfVa~A~mEy~cskD~~~Af 421 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE----DKRTRHHVFVAAALMEYYCSKDKETAF 421 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh----ccCCcchhhHHHHHHHHHhcCChhHHH
Confidence 3556667777777654433 34566666666677778889999999987 222223444444433 56789999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-ChhHHHHHHHHHhhCCC
Q 021175 243 SQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF--DPN-NKVARPRRDALKDRVPL 305 (316)
Q Consensus 243 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~-~~~a~~~l~~l~~~~~~ 305 (316)
..|+-.++..++.+..-......+...|+-..|...|++++.. .|+ ..+.|...-..+...|+
T Consensus 422 rIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 422 RIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 9999999999999988888888888999999999999999876 333 23555555444444444
No 365
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=88.40 E-value=17 Score=33.31 Aligned_cols=72 Identities=18% Similarity=0.144 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 021175 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY 255 (316)
Q Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 255 (316)
+...+.+-..|...+.|+.|.+...++.---...+...+...+.+|.+..-+++|..|.+++-+|++..|++
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 445556667888889999998887776521000233557778889999999999999999999999999976
No 366
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.24 E-value=5.9 Score=38.66 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 021175 184 ATEYFELGAVMLRRKFYPAATKYLLQAIE 212 (316)
Q Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 212 (316)
.+++.++|..+..+..|++|.++|.+.-.
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56888999999999999999998877644
No 367
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.16 E-value=6.7 Score=36.71 Aligned_cols=98 Identities=16% Similarity=0.108 Sum_probs=59.5
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
+.|+.+.|.+.. ...+++..|..+|...+.+|+++-|+++|+++-. +..|...|...|+.+.=
T Consensus 330 ~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 330 QLGNLDIALEIA-----KELDDPEKWKQLGDEALRQGNIELAEECYQKAKD------------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------HHHHHHHHHHCT-HHHH
T ss_pred hcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------------ccccHHHHHHhCCHHHH
Confidence 445555444422 2345788999999999999999999999998866 34566777788887666
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175 242 ISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEE 281 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 281 (316)
.+..+.|......+.. =.++...|+.++-.+.+.+
T Consensus 393 ~kl~~~a~~~~~~n~a-----f~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 393 SKLAKIAEERGDINIA-----FQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHTT-HHHH-----HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHH-----HHHHHHcCCHHHHHHHHHH
Confidence 6665555543322211 1233445555555555443
No 368
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.96 E-value=11 Score=34.36 Aligned_cols=99 Identities=17% Similarity=0.017 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------C-Cc
Q 021175 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ-------P-GY 255 (316)
Q Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p-~~ 255 (316)
-.++..+|.-|...|+.+.|++.|-++-..+.+ ..+....+.|+=.+-...|+|..-..+-.+|.+.- + -.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 357889999999999999999999997775542 44567778888888888999988888777776641 0 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021175 256 VTAWNNLGDAYEKKKDLKSALKAFEEVL 283 (316)
Q Consensus 256 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 283 (316)
+.....-|.+...+++|..|.+++-.+-
T Consensus 229 ~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455667777888889999998886553
No 369
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=87.81 E-value=19 Score=35.41 Aligned_cols=108 Identities=11% Similarity=0.141 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 163 RRELDLSAKELQEQVRSGDASATEYFELG-AVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
-|++++|++.|-.+-+.+ ++ ..+.+.|||-...+.++..-. +..+.....++.++|..+..+.++++|
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~--d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGS--DDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCC--CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777776543221 22 345566777666666554322 002345577889999999999999999
Q ss_pred HHHHHHHHH----------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175 242 ISQFETAVK----------------------LQPGYVTAWNNLGDAYEKKKDLKSALKAFEE 281 (316)
Q Consensus 242 ~~~~~~al~----------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 281 (316)
.++|.+.-. .-|++.+..-.+|.++...|--++|.++|.+
T Consensus 816 ~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 816 AKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 998866432 1255555666667777777777777776654
No 370
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=87.74 E-value=1.9 Score=23.14 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 021175 237 KLDKGISQFETAVKLQPGYVTAWNNL 262 (316)
Q Consensus 237 ~~~~A~~~~~~al~~~p~~~~~~~~l 262 (316)
+.+.|.+.|++++...|.+...|...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 34445555555555555555544443
No 371
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=87.58 E-value=1.5 Score=23.65 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 021175 270 KDLKSALKAFEEVLLFDPNNKVARPRRDALK 300 (316)
Q Consensus 270 g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~ 300 (316)
|+.+.+...|++++...|.++..|.......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5788999999999999999999998876654
No 372
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.36 E-value=12 Score=34.39 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=40.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHcCCCCH--HHHHHHHHHH--HHcCChHHHHHHHHHHHH
Q 021175 157 IRQVLVRRELDLSAKELQEQVRSGDASA--TEYFELGAVM--LRRKFYPAATKYLLQAIE 212 (316)
Q Consensus 157 ~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~--~~~g~~~~A~~~~~~al~ 212 (316)
....++.++|..|.+.+......-|... ..+..+...| -..-++++|.+++++...
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3445689999999999999988633333 3444554444 467889999999999887
No 373
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=86.88 E-value=8.6 Score=33.18 Aligned_cols=60 Identities=13% Similarity=0.011 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCChH-HHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 021175 186 EYFELGAVMLRRKFYP-AATKYLLQAIEKWDG--DDQDLAQVYNALGVSYVREGKLDKGISQF 245 (316)
Q Consensus 186 ~~~~lg~~~~~~g~~~-~A~~~~~~al~~~~~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 245 (316)
...++..+....+.-+ +-.+..+++++-... ..-.++..+..+|..+++.|++.+|..+|
T Consensus 51 ~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 51 SIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3345555554443332 334444455543311 11245666666666666666666666554
No 374
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=86.31 E-value=10 Score=32.97 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=71.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHH---HHcCC----hHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 021175 158 RQVLVRRELDLSAKELQEQVRSGDA--SATEYFELGAVM---LRRKF----YPAATKYLLQAIEKWDGDDQDLAQVYNAL 228 (316)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~---~~~g~----~~~A~~~~~~al~~~~~~~p~~~~~~~~l 228 (316)
++.+..++|++-.+.+.+..+...+ ..+..+..+... ..... ...-.+.++.-++ ..|++..++..+
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~----a~P~Sy~A~La~ 83 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVA----ACPKSYHAHLAM 83 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHH----HCCCChHHHHHH
Confidence 4456788888888877777653322 111112222211 11111 1135666667777 688888888888
Q ss_pred HHHHHHcC----------------------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 021175 229 GVSYVREG----------------------KLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLK 273 (316)
Q Consensus 229 g~~~~~~g----------------------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 273 (316)
|..+.... -.+.|...+.+|++++|....+...+-.+-...|+.+
T Consensus 84 g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 84 GMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 87766431 2467888899999999999888887777777777654
No 375
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.59 E-value=4.3 Score=35.31 Aligned_cols=60 Identities=17% Similarity=0.021 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021175 186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAV 249 (316)
Q Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 249 (316)
.....+..|...|.+.+|+++-++++. .+|-+...+..+=.++...|+--++++.|++--
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt----ldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT----LDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh----cChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344456678889999999999999999 799999999999999999999999999887643
No 376
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.36 E-value=6.2 Score=26.87 Aligned_cols=18 Identities=22% Similarity=0.560 Sum_probs=9.1
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 021175 232 YVREGKLDKGISQFETAV 249 (316)
Q Consensus 232 ~~~~g~~~~A~~~~~~al 249 (316)
+-..|++++|+.+|++++
T Consensus 16 ~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 16 AEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHhcCCHHHHHHHHHHHH
Confidence 444555555555554444
No 377
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=84.94 E-value=3 Score=27.74 Aligned_cols=19 Identities=11% Similarity=0.377 Sum_probs=10.3
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 021175 232 YVREGKLDKGISQFETAVK 250 (316)
Q Consensus 232 ~~~~g~~~~A~~~~~~al~ 250 (316)
.-..|++++|++.|.++++
T Consensus 15 ~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 15 ADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHTTSHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 3445566665555555543
No 378
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=84.59 E-value=5.9 Score=36.39 Aligned_cols=64 Identities=17% Similarity=0.078 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH----hcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175 187 YFELGAVMLRRKFYPAATKYLLQAIE----KWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVK 250 (316)
Q Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~----~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 250 (316)
...+..++.-.|||..|++.++..-- .+....+-+...++..|.+|+-+++|.+|+..|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666777777666542210 01112334455667777777777777777777776663
No 379
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=84.35 E-value=1.7 Score=36.60 Aligned_cols=108 Identities=13% Similarity=0.090 Sum_probs=62.9
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCCccH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc--HH
Q 021175 194 MLRRKFYPAATKYLLQAIEKWDGDDQDL---------AQVYNALGVSYVREGKLDKGISQFETAVKL-----QPGY--VT 257 (316)
Q Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~--~~ 257 (316)
.+..|+++.|++..+.|++..-. -|+. ++-...-+......|+.-+. ..++....+ -|+. +.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~-~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~~dmpd~vrAK 170 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLT-MPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTTEWDMPDEVRAK 170 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCC-CCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhcCCCChHHHHH
Confidence 45678999999999999985321 1211 22223344445555553211 112222222 1333 34
Q ss_pred HHHHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCC
Q 021175 258 AWNNLGDAYE---------KKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVP 304 (316)
Q Consensus 258 ~~~~lg~~~~---------~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~ 304 (316)
.+-..|..+. ..++.+.|+.++++|++++|+. .+...+..+..++.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr 225 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHh
Confidence 4556677663 4567889999999999999864 44555666666654
No 380
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.04 E-value=8.4 Score=39.36 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 221 LAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 221 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
.+..|..+|.+..+.|...+|++.|-+| +++..|...-.+..+.|.+++-++++..+.+.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 3667888888888888888888887554 56677777777777888888888877776553
No 381
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=83.75 E-value=3.3 Score=28.33 Aligned_cols=19 Identities=16% Similarity=0.364 Sum_probs=11.2
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 021175 232 YVREGKLDKGISQFETAVK 250 (316)
Q Consensus 232 ~~~~g~~~~A~~~~~~al~ 250 (316)
.-..|+|++|+.+|+++++
T Consensus 16 ~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 16 RDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 3345666666666666654
No 382
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.62 E-value=29 Score=35.81 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=88.2
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC------------------------
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG------------------------ 216 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------------------------ 216 (316)
++.+...+|++.|-++ +++..|...-.+..+.|.|++-+.++.-+-+...+
T Consensus 1115 L~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1115 LQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh
Confidence 3556666777666553 56677777777788888888888777766553210
Q ss_pred CCcc-------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------C------
Q 021175 217 DDQD-------------------------LAQVYNALGVSYVREGKLDKGISQFETAVKLQP-----------G------ 254 (316)
Q Consensus 217 ~~p~-------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------~------ 254 (316)
..|+ +..-+..|+..+...|+|+.|+..-++|-.... .
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHH
Confidence 0111 122234567777788888888888777643220 0
Q ss_pred --------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhh
Q 021175 255 --------YVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDR 302 (316)
Q Consensus 255 --------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~ 302 (316)
+++-.-.+-..|...|-+++-+..++.++-+...+......++.++.+
T Consensus 1270 iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1270 ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 123344566777888888888888888887776666666666666544
No 383
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.31 E-value=36 Score=33.68 Aligned_cols=118 Identities=7% Similarity=-0.067 Sum_probs=71.3
Q ss_pred HhhhHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 021175 162 VRRELDLSAKELQEQVRSGDAS----ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGK 237 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~ 237 (316)
...+.+.|...+.+......-. ......+|.-....+.-++|..++.++.. ...+....-..-..-...++
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~-----~~~~~~~~e~r~r~Al~~~d 327 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM-----RSQSTSLLERRVRMALGTGD 327 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc-----ccCCcHHHHHHHHHHHHccC
Confidence 3445566777776654433322 22333444333333336677777776554 11122222222334447888
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 021175 238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLL 284 (316)
Q Consensus 238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 284 (316)
++.....+...-....+.....|.+|..+...|+.++|...|+++..
T Consensus 328 w~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 328 RRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88887777764433345677889999999999999999999999754
No 384
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.91 E-value=32 Score=30.13 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=36.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHcCChHHHH
Q 021175 157 IRQVLVRRELDLSAKELQEQVRSGD--------ASATEYFELGAVMLRRKFYPAAT 204 (316)
Q Consensus 157 ~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~ 204 (316)
.++....+++++|+..|.+.+...- +...+..+++.+|...|++..--
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~ 65 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLG 65 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHH
Confidence 3445588999999999999987632 23457889999999999886533
No 385
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=82.88 E-value=2.7 Score=28.94 Aligned_cols=18 Identities=6% Similarity=0.346 Sum_probs=10.4
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 021175 233 VREGKLDKGISQFETAVK 250 (316)
Q Consensus 233 ~~~g~~~~A~~~~~~al~ 250 (316)
-..|+.++|+.+|+++++
T Consensus 19 dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 19 DEWGDKEQALAHYRKGLR 36 (79)
T ss_pred hhcCCHHHHHHHHHHHHH
Confidence 344666666666666554
No 386
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=82.80 E-value=15 Score=31.37 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021175 184 ATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDD--QDLAQVYNALGVSYVREGKLDKGISQFETAV 249 (316)
Q Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 249 (316)
......+|..|+..|+|++|.++|+.+...+.+.. .-...+...+-.|+...|+.++.+...-+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45667899999999999999999999977433211 2245667778899999999998887765543
No 387
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=82.79 E-value=16 Score=32.35 Aligned_cols=84 Identities=12% Similarity=0.080 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021175 167 DLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246 (316)
Q Consensus 167 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 246 (316)
..-.+++++-....|+..++.+..+...+..|+|..|-+++--.....+..+++...+....=..-.-+.+|+.|.+.+.
T Consensus 112 ~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~ 191 (432)
T KOG2758|consen 112 VQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLT 191 (432)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35567777777788999999999999999999999999887766665443455555555444334455789999999886
Q ss_pred HHHH
Q 021175 247 TAVK 250 (316)
Q Consensus 247 ~al~ 250 (316)
+.-+
T Consensus 192 rLre 195 (432)
T KOG2758|consen 192 RLRE 195 (432)
T ss_pred HHHH
Confidence 6554
No 388
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=82.25 E-value=6.4 Score=30.50 Aligned_cols=47 Identities=15% Similarity=0.042 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 021175 226 NALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDL 272 (316)
Q Consensus 226 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 272 (316)
...+...+..|++.-|.+....++..+|++.++....+.++.++|..
T Consensus 74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 74 LERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 33444556667777777777777777777777777777777766643
No 389
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=81.62 E-value=28 Score=29.44 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=57.8
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCH------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-CCcc--HHHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASA------------TEYFELGAVMLRRKFYPAATKYLLQAIEKWDG-DDQD--LAQVYN 226 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~p~--~~~~~~ 226 (316)
+.|+++.|++..+-+++.+-..| +....-+......|+.-+. ...+....+... .-|+ .+..|-
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhcCCCChHHHHHHHH
Confidence 78999999999999999654322 2333444444555553211 112222222111 1233 455666
Q ss_pred HHHHHHH---------HcCCHHHHHHHHHHHHHhCCCc
Q 021175 227 ALGVSYV---------REGKLDKGISQFETAVKLQPGY 255 (316)
Q Consensus 227 ~lg~~~~---------~~g~~~~A~~~~~~al~~~p~~ 255 (316)
..|..+. ..++..+|..++++|++++|+.
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 6788774 4568889999999999999975
No 390
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=81.56 E-value=5.3 Score=27.20 Aligned_cols=27 Identities=19% Similarity=-0.006 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 021175 187 YFELGAVMLRRKFYPAATKYLLQAIEK 213 (316)
Q Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 213 (316)
+...+.-+-..|++++|+.+|+++++.
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 444455556677777777777777663
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.29 E-value=6.5 Score=32.10 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 021175 222 AQVYNALGVSYVREGKLDKGISQFETAVKLQP 253 (316)
Q Consensus 222 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 253 (316)
+..+.+++.++...|+.++|.+..+++..+.|
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44444455555555555555555555555555
No 392
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=80.98 E-value=49 Score=30.95 Aligned_cols=119 Identities=7% Similarity=-0.040 Sum_probs=79.4
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 021175 162 VRRELDLSAKELQEQVRSGDASAT-----EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG 236 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g 236 (316)
.+++.+++.+.|.+..+...+.+. .+-+.-.-.+-.++.+.-.......-+ ..|..+....-.|...++.|
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~----~~~~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQ----QFGKSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHH----hcCCchHHHHHHHHHHHHhh
Confidence 788999999999998776554432 222222222334455555544444444 56777777788899999999
Q ss_pred CHHHHHHHHHHHHHhCCCc-------------HHHH--HHHHHHHHHcCCHHHHHHHHHHHHh
Q 021175 237 KLDKGISQFETAVKLQPGY-------------VTAW--NNLGDAYEKKKDLKSALKAFEEVLL 284 (316)
Q Consensus 237 ~~~~A~~~~~~al~~~p~~-------------~~~~--~~lg~~~~~~g~~~~A~~~~~~al~ 284 (316)
+|.+|++.+..--..-.+. ++.+ .-.+.++...|++.+++..+++.+.
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 9999999886554431111 1111 2356788899999999999888775
No 393
>PF12854 PPR_1: PPR repeat
Probab=80.95 E-value=4.7 Score=22.55 Aligned_cols=26 Identities=12% Similarity=-0.050 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 021175 184 ATEYFELGAVMLRRKFYPAATKYLLQ 209 (316)
Q Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~ 209 (316)
...|..+-..+.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44455555666666666666665543
No 394
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.87 E-value=32 Score=33.04 Aligned_cols=121 Identities=11% Similarity=0.090 Sum_probs=72.4
Q ss_pred HhhhHHHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-------------
Q 021175 162 VRRELDLSAKELQEQVRS------------GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG------------- 216 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------------- 216 (316)
....|+++...|.-+... .|-+.+.+..++.++..+|+.+-|.+..++++=.++.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345566777777666553 3445677777888888888888888888887754431
Q ss_pred ----CCccHHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 021175 217 ----DDQDLAQVYN---ALGVSYVREGKLDKGISQFETAVKLQPG-YVTAWNNLGDAYE-KKKDLKSALKAFEEV 282 (316)
Q Consensus 217 ----~~p~~~~~~~---~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~a 282 (316)
..|.+-..|. ..=....+.|.+.-|.++++-.++++|. ++-+...+-..|. +..+|+--++.++..
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1122222221 2223344667778888888877788776 6665555555543 344555555554443
No 395
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=79.66 E-value=5.4 Score=30.89 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175 257 TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY 306 (316)
Q Consensus 257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~ 306 (316)
+.....+......|++..|.+....++..+|++.+++...+..+..+|.-
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 33444555667889999999999999999999999999999988887643
No 396
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=79.31 E-value=43 Score=29.37 Aligned_cols=103 Identities=8% Similarity=0.019 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HH
Q 021175 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG--DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY---VT 257 (316)
Q Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 257 (316)
..+++.++|..|.+.++-+.+.++..+.++..-. +.-+..-+-..+|.+|-.+.=.++.++..+..++..-+. -.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 4789999999999999999999999988874221 222334455678888877776777777777766654332 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 258 AWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 258 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
.....|.-.....++.+|...+..++..
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 2234565666677888888887776643
No 397
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=79.29 E-value=4.9 Score=27.38 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=10.3
Q ss_pred HcCCHHHHHHHHHHHHH
Q 021175 234 REGKLDKGISQFETAVK 250 (316)
Q Consensus 234 ~~g~~~~A~~~~~~al~ 250 (316)
..|+|++|++.|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 34666666666666665
No 398
>PF12854 PPR_1: PPR repeat
Probab=79.25 E-value=5.5 Score=22.26 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 021175 257 TAWNNLGDAYEKKKDLKSALKAFE 280 (316)
Q Consensus 257 ~~~~~lg~~~~~~g~~~~A~~~~~ 280 (316)
..|..+-..|.+.|+.++|.+.++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344445555555555555555544
No 399
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.59 E-value=65 Score=31.03 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=80.4
Q ss_pred HHhhhHHHHHHHHHHHHH-----cC----------------CCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 021175 161 LVRRELDLSAKELQEQVR-----SG----------------DASAT---EYFELGAVMLRRKFYPAATKYLLQAIEKWDG 216 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~-----~~----------------p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 216 (316)
..+|+.+.+....++++= .. |.+-. +.+..-..+.+.|-+..|.++.+-.+.
T Consensus 295 r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKllls---- 370 (665)
T KOG2422|consen 295 RFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLS---- 370 (665)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh----
Confidence 478999999999999863 11 21222 223333445678999999999988888
Q ss_pred CCcc-HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC
Q 021175 217 DDQD-LAQVYNALGVSY-VREGKLDKGISQFETAVK-----LQPGYVTAWNNLGDAYEKKKD---LKSALKAFEEVLLFD 286 (316)
Q Consensus 217 ~~p~-~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~ 286 (316)
++|. ++.+...+-..| .+..+|+=-|+.++..-. .-|+..- -..++..|..... .+.|...+.+|+...
T Consensus 371 Ldp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 371 LDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred cCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 6776 665554444443 567788877777776633 3344322 2335555555544 678999999999998
Q ss_pred C
Q 021175 287 P 287 (316)
Q Consensus 287 p 287 (316)
|
T Consensus 450 P 450 (665)
T KOG2422|consen 450 P 450 (665)
T ss_pred c
Confidence 8
No 400
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=78.56 E-value=3.9 Score=37.56 Aligned_cols=58 Identities=19% Similarity=0.270 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 021175 226 NALGVSYVREGKLDKGISQFETAVKLQ---------PGYVTAWNNLGDAYEKKKDLKSALKAFEEVLL 284 (316)
Q Consensus 226 ~~lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 284 (316)
..|.+++.-.|||..|++.++-. +++ +-+...++..|-+|.-+++|.+|++.|..++-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788899999999997542 222 23456789999999999999999999998874
No 401
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.49 E-value=41 Score=29.88 Aligned_cols=98 Identities=10% Similarity=0.090 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHH
Q 021175 185 TEYFELGAVMLRRKFYPAATKYLLQAIEKWDG----DDQDLAQVYNALGVSYVREGKLDKGISQFETAVK--LQPGYVTA 258 (316)
Q Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 258 (316)
.....++.+|.+.++|..|-+.+... .+-.. ........+..+|..|...++..+|..+..++-= .+..+.+.
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Confidence 35566777777777777665554321 11000 0112234556677777777777777777666532 23344443
Q ss_pred HHHHH----HHHHHcCCHHHHHHHHHHHH
Q 021175 259 WNNLG----DAYEKKKDLKSALKAFEEVL 283 (316)
Q Consensus 259 ~~~lg----~~~~~~g~~~~A~~~~~~al 283 (316)
...+- .+.-..+++-+|...|-+..
T Consensus 183 qie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 183 QIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 23333455555555444443
No 402
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=78.39 E-value=12 Score=35.53 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175 182 ASATEYFELGAVMLRR--KFYPAATKYLLQAIEKWDG-DDQDLAQVYNALGVSYVREGKLDKGISQFETAVK 250 (316)
Q Consensus 182 ~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 250 (316)
..|.++-+||.+..-. ..-..+++.|.+|+..... .+..+...|..+|-.+++.++|.+|+..+-+|-+
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888776543 4456789999999985433 3345566788899999999999999999988765
No 403
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=78.31 E-value=48 Score=29.32 Aligned_cols=124 Identities=10% Similarity=0.081 Sum_probs=87.7
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc----CC--------CCc---cHHHH-
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKW----DG--------DDQ---DLAQV- 224 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~--------~~p---~~~~~- 224 (316)
+.++++.+.++..++.+..+|-.-+.++..+.+..+.| ++++.+.....++.+ |. ..| .....
T Consensus 110 ~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~W 188 (301)
T TIGR03362 110 LAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAW 188 (301)
T ss_pred HhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHH
Confidence 36678889999999999999999999999999999999 566666665555432 10 000 01111
Q ss_pred ---------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHH
Q 021175 225 ---------------------------YNALGVSYVREGKLDKGISQFETAVKLQPGY---VTAWNNLGDAYEKKKDLKS 274 (316)
Q Consensus 225 ---------------------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~ 274 (316)
...-+......|..++|+..+++.+...++. ......++.++...|..+-
T Consensus 189 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~l 268 (301)
T TIGR03362 189 LAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAEL 268 (301)
T ss_pred HHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 1122556678889999999998876543332 3344567888999999999
Q ss_pred HHHHHHHHHhc
Q 021175 275 ALKAFEEVLLF 285 (316)
Q Consensus 275 A~~~~~~al~~ 285 (316)
|...|++..+.
T Consensus 269 A~~ll~~L~~~ 279 (301)
T TIGR03362 269 AQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHHHHH
Confidence 99999887764
No 404
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.29 E-value=17 Score=34.49 Aligned_cols=66 Identities=18% Similarity=0.101 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCC
Q 021175 224 VYNALGVSYVREGKLDKGISQFETAVKL---QPG----YVTAWNNLGDAYEKKKD-LKSALKAFEEVLLFDPNN 289 (316)
Q Consensus 224 ~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~ 289 (316)
-+..+|.++..+|+...|..+|+.+++. ..+ .|.++|.+|..|..+|. ..++..++.+|-+...++
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 4456799999999999999999988843 222 27899999999999998 999999999998877554
No 405
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=78.01 E-value=27 Score=26.35 Aligned_cols=80 Identities=11% Similarity=0.128 Sum_probs=56.6
Q ss_pred CChHHHHHHHHHHHHhcCC-----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcC
Q 021175 198 KFYPAATKYLLQAIEKWDG-----DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL--QPGYVTAWNNLGDAYEKKK 270 (316)
Q Consensus 198 g~~~~A~~~~~~al~~~~~-----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g 270 (316)
+.-..-...++++++.+.. .++.....|...+.. .+++.+.|+..... ..+.+..|...|..+...|
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~------~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~ 113 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL------SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG 113 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT------BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH------ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC
Confidence 4556667788888887643 233444455544432 22888888877764 4667899999999999999
Q ss_pred CHHHHHHHHHHHH
Q 021175 271 DLKSALKAFEEVL 283 (316)
Q Consensus 271 ~~~~A~~~~~~al 283 (316)
++++|.+.|++++
T Consensus 114 ~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 114 NFKKADEIYQLGI 126 (126)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998864
No 406
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.89 E-value=14 Score=36.84 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=38.1
Q ss_pred HhhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 021175 162 VRRELDLSAKELQEQVRSGD-ASATEYFELGAVMLRRKFYPAATKYLLQAIEK 213 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 213 (316)
.+..|+-|+...+.. ..++ .....+...|.-++.+|++++|...|-+++..
T Consensus 346 kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 346 KKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 556667777655542 2222 34668889999999999999999999999985
No 407
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=77.79 E-value=6.9 Score=26.77 Aligned_cols=17 Identities=12% Similarity=0.573 Sum_probs=8.3
Q ss_pred HcCCHHHHHHHHHHHHH
Q 021175 234 REGKLDKGISQFETAVK 250 (316)
Q Consensus 234 ~~g~~~~A~~~~~~al~ 250 (316)
..|+|++|+.+|.++++
T Consensus 18 ~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 18 QEGRFQEALVCYQEGID 34 (77)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44555555555544443
No 408
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=76.59 E-value=17 Score=27.36 Aligned_cols=29 Identities=10% Similarity=-0.124 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 021175 187 YFELGAVMLRRKFYPAATKYLLQAIEKWD 215 (316)
Q Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 215 (316)
+..+|+...+.+++-.++-+|++|+....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se 32 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSE 32 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777543
No 409
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=76.48 E-value=51 Score=28.72 Aligned_cols=113 Identities=11% Similarity=0.118 Sum_probs=75.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHH--HHHHHHcCC----HHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 021175 192 AVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNAL--GVSYVREGK----LDKGISQFETAVKLQPGYVTAWNNLGDA 265 (316)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~l--g~~~~~~g~----~~~A~~~~~~al~~~p~~~~~~~~lg~~ 265 (316)
..+...++|++=.+.+.+..+......+.... |... +........ ..+-.+.++.=++..|++..++...|..
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccch-HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 44667889999888888887643221222222 1111 111222211 1245667777778899999888888887
Q ss_pred HHHcC----------------------CHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCC
Q 021175 266 YEKKK----------------------DLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPL 305 (316)
Q Consensus 266 ~~~~g----------------------~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~ 305 (316)
+.... -.+.|...+.++++++|+...+...+-.+-...|+
T Consensus 87 ~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 87 WVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 76431 14688999999999999999999888777776665
No 410
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.76 E-value=11 Score=30.68 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 021175 170 AKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIE 212 (316)
Q Consensus 170 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 212 (316)
++..++.++..| ++..+.+++.++...|+.++|.+..+++..
T Consensus 131 ~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 131 IEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333334444444 344444445555555555555444444444
No 411
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.16 E-value=8 Score=36.13 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=63.8
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 021175 195 LRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKS 274 (316)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 274 (316)
...|+.-.|-+-...+++ ..|.++..-...+.+....|+|++|.+.+..+-..-.....+...+-.....+|+.++
T Consensus 300 ~~~gd~~aas~~~~~~lr----~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALR----NQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHH----hCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 345777778777788887 4677777777778888999999999888766555443334444444455667888888
Q ss_pred HHHHHHHHHhcCCCChh
Q 021175 275 ALKAFEEVLLFDPNNKV 291 (316)
Q Consensus 275 A~~~~~~al~~~p~~~~ 291 (316)
|...-+-.+.-.-++++
T Consensus 376 a~s~a~~~l~~eie~~e 392 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEE 392 (831)
T ss_pred HHHHHHHHhccccCChh
Confidence 88777666654333333
No 412
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.02 E-value=32 Score=32.68 Aligned_cols=99 Identities=10% Similarity=-0.051 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 021175 167 DLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFE 246 (316)
Q Consensus 167 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 246 (316)
+...+.+....+..|+.+--..+.+..+...|+-+.|+..++.++. .....-..-.++.+|.++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5566666677778999998889999999999998888888888876 11233456678889999999999999999999
Q ss_pred HHHHhCCCcHHHHHHH-HHHHH
Q 021175 247 TAVKLQPGYVTAWNNL-GDAYE 267 (316)
Q Consensus 247 ~al~~~p~~~~~~~~l-g~~~~ 267 (316)
...+.+.=....|..+ |.|+.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l 349 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLL 349 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHh
Confidence 9887665443334333 34443
No 413
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=74.85 E-value=83 Score=35.57 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=88.7
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CC-----ccH------HHHHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG--DD-----QDL------AQVYNAL 228 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~-----p~~------~~~~~~l 228 (316)
..|.++.|-..+-++.+.. -+.++...|......|+-..|+..+++.+..... .. |.. ..+....
T Consensus 1682 ~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~ 1759 (2382)
T KOG0890|consen 1682 LAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKI 1759 (2382)
T ss_pred hcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHH
Confidence 5788888888888887776 6788999999999999999999999999976422 11 111 1233334
Q ss_pred HHHHHHcCCH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHH------------HcCCHHH---HHHHHHHHHhcCCC
Q 021175 229 GVSYVREGKL--DKGISQFETAVKLQPGYVTAWNNLGDAYE------------KKKDLKS---ALKAFEEVLLFDPN 288 (316)
Q Consensus 229 g~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~lg~~~~------------~~g~~~~---A~~~~~~al~~~p~ 288 (316)
+.-....|++ ++-+++|+++.++.|...+.++.+|..|. +.|++.. ++..|.+++.....
T Consensus 1760 ~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~ 1836 (2382)
T KOG0890|consen 1760 TKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQ 1836 (2382)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcch
Confidence 4444455553 45678899999999988888888875443 3456655 66666777766543
No 414
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.66 E-value=52 Score=31.32 Aligned_cols=78 Identities=15% Similarity=0.051 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 021175 166 LDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQF 245 (316)
Q Consensus 166 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 245 (316)
++-....+.+.+... ++..++..++.+|... .-++-...+++.++ .+-++...-..|+..|.+ ++-+++..+|
T Consensus 82 ~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve----~dfnDvv~~ReLa~~yEk-ik~sk~a~~f 154 (711)
T COG1747 82 NQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVE----YDFNDVVIGRELADKYEK-IKKSKAAEFF 154 (711)
T ss_pred HHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHH----hcchhHHHHHHHHHHHHH-hchhhHHHHH
Confidence 333333444444433 3445566666666666 44555566666666 355555555555555544 6666677777
Q ss_pred HHHHH
Q 021175 246 ETAVK 250 (316)
Q Consensus 246 ~~al~ 250 (316)
.+++.
T Consensus 155 ~Ka~y 159 (711)
T COG1747 155 GKALY 159 (711)
T ss_pred HHHHH
Confidence 66664
No 415
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=74.50 E-value=76 Score=29.75 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=52.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 021175 172 ELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKL 251 (316)
Q Consensus 172 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 251 (316)
.+++-++.+|++...|+.+-.-+..+|.+++-.+.|++... ..|-.+.+|...-.--...+++..-...|-+++..
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~----pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSS----PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC----CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 45566777888888888888888888888888888877776 46666666554433344556777777777777654
No 416
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=74.31 E-value=9.4 Score=25.85 Aligned_cols=17 Identities=12% Similarity=0.519 Sum_probs=8.4
Q ss_pred HcCCHHHHHHHHHHHHH
Q 021175 234 REGKLDKGISQFETAVK 250 (316)
Q Consensus 234 ~~g~~~~A~~~~~~al~ 250 (316)
..|++++|+.+|.++++
T Consensus 20 ~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 20 EAGDYEEALELYKKAIE 36 (77)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 34555555555544443
No 417
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=74.28 E-value=6.7 Score=27.01 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 236 GKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 236 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
+-|++|.+...+|++.+ ..|+.++|+.+|+++++.
T Consensus 3 ~~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 3 GYYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLRE 37 (79)
T ss_pred hHHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHHH
Confidence 44667777777766644 457777777777777654
No 418
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=73.51 E-value=67 Score=28.68 Aligned_cols=102 Identities=13% Similarity=0.025 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---
Q 021175 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG--DDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVT--- 257 (316)
Q Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 257 (316)
..+++.+.|..|.+.||-+.|.+.+++..+..-. ..-+..-+...+|..|....=..+.++-.+..++..- +++
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg-DWeRrN 181 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG-DWERRN 181 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC-Chhhhh
Confidence 4679999999999999999999999888774221 1223444566788888766555555554444444322 222
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 258 -AWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 258 -~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
.....|.......++.+|...|-.++..
T Consensus 182 RlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 182 RLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 2233455666778888998888777754
No 419
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=73.37 E-value=27 Score=26.84 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=29.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 021175 232 YVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLL 284 (316)
Q Consensus 232 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 284 (316)
...+|+-++=.+.++...+.+..+++....+|.+|.+.|+..+|-+.+++|-+
T Consensus 96 lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34556666666666666554455566677777777777777777776666654
No 420
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=73.04 E-value=31 Score=26.03 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=44.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 021175 156 VIRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE 235 (316)
Q Consensus 156 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~ 235 (316)
.+.+.+..+++-.++-.|++++....+.. ..+-.+..+.+- -......||+..+..+
T Consensus 7 lAd~a~~~~~~l~si~hYQqAls~se~~~------------~~~~~el~dll~-----------i~VisCHNLA~FWR~~ 63 (140)
T PF10952_consen 7 LADQAFKEADPLRSILHYQQALSLSEEID------------ESNEIELEDLLT-----------ISVISCHNLADFWRSQ 63 (140)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhc------------ccccccHHHHHH-----------HHHHHHhhHHHHHHHc
Confidence 34455677888888888888776532210 000011111111 1123456788888888
Q ss_pred CCHHHHHHHHHHH----HHhCCCcH
Q 021175 236 GKLDKGISQFETA----VKLQPGYV 256 (316)
Q Consensus 236 g~~~~A~~~~~~a----l~~~p~~~ 256 (316)
|+.+=.+++++-| +.+-|+.+
T Consensus 64 gd~~yELkYLqlASE~VltLiPQCp 88 (140)
T PF10952_consen 64 GDSDYELKYLQLASEKVLTLIPQCP 88 (140)
T ss_pred CChHHHHHHHHHHHHHHHHhccCCC
Confidence 9888888888654 44566543
No 421
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=72.77 E-value=11 Score=25.54 Aligned_cols=17 Identities=12% Similarity=0.491 Sum_probs=8.6
Q ss_pred HcCCHHHHHHHHHHHHH
Q 021175 234 REGKLDKGISQFETAVK 250 (316)
Q Consensus 234 ~~g~~~~A~~~~~~al~ 250 (316)
..|++++|+..|.++++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 18 NAGNYEEALRLYQHALE 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44555555555554443
No 422
>PF13041 PPR_2: PPR repeat family
Probab=72.36 E-value=19 Score=21.79 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 021175 185 TEYFELGAVMLRRKFYPAATKYLLQAIE 212 (316)
Q Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 212 (316)
..|..+-..+.+.|++++|.+.|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3455555555666666666666666554
No 423
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=71.93 E-value=27 Score=26.89 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 021175 163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIE 212 (316)
Q Consensus 163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 212 (316)
+|.-++-.+.+....+.+...+.....+|.+|.+.|+..+|.+.+.+|.+
T Consensus 99 ~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 99 QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33333333334443333334455555555555555555555555555554
No 424
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.39 E-value=8.6 Score=26.18 Aligned_cols=20 Identities=15% Similarity=0.029 Sum_probs=15.4
Q ss_pred HHcCChHHHHHHHHHHHHhc
Q 021175 195 LRRKFYPAATKYLLQAIEKW 214 (316)
Q Consensus 195 ~~~g~~~~A~~~~~~al~~~ 214 (316)
-..|+|++|+++|..+++.+
T Consensus 17 D~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 17 DEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred hHhhhHHHHHHHHHHHHHHH
Confidence 35688888888888888853
No 425
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=70.86 E-value=79 Score=28.38 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=43.6
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCccHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCcHHHHHHHHH-H
Q 021175 196 RRKFYPAATKYLLQAIEKWDGDDQDLA--QVYNALGVSYVREGKLDKGISQFETAVK-------LQPGYVTAWNNLGD-A 265 (316)
Q Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~lg~-~ 265 (316)
+.+|.++|++++++.++.....+..++ ......|.++...||.+++.+.+.+.-+ ..|+-...+|.++. .
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqY 166 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQY 166 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHH
Confidence 344666777777666665432222122 2334456666666777666666655443 11222233444443 3
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 021175 266 YEKKKDLKSALKAFEEVL 283 (316)
Q Consensus 266 ~~~~g~~~~A~~~~~~al 283 (316)
|...|++.....+.-+-+
T Consensus 167 yk~~~d~a~yYr~~L~YL 184 (380)
T KOG2908|consen 167 YKKIGDFASYYRHALLYL 184 (380)
T ss_pred HHHHHhHHHHHHHHHHHh
Confidence 344566655544444433
No 426
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=70.33 E-value=49 Score=29.08 Aligned_cols=118 Identities=13% Similarity=0.121 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHH----------HHcC-------ChHHHHHHHHHHHHhcCCCC--ccHHHHHHH
Q 021175 167 DLSAKELQEQVRSGDASATEYFELGAVM----------LRRK-------FYPAATKYLLQAIEKWDGDD--QDLAQVYNA 227 (316)
Q Consensus 167 ~~A~~~~~~al~~~p~~~~~~~~lg~~~----------~~~g-------~~~~A~~~~~~al~~~~~~~--p~~~~~~~~ 227 (316)
.+|.+.+..++.. ..-+..|-.++.-+ +.+| .-++-++-+.+.++.....+ ....+++.|
T Consensus 42 ~ka~e~l~~~i~d-~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n 120 (412)
T COG5187 42 SKALEHLERLIID-KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRN 120 (412)
T ss_pred hHHHHHHHHHHHH-hhhhHHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 3466766665543 33444555555422 1122 22344445555555332222 234567777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 228 LGVSYVREGKLDKGISQFETAVKLQPGYV------TAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 228 lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
+|..|.+.++.+.+.+...+.++.+-... -....+|.+|..+.-.++.++..+..++.
T Consensus 121 ~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk 184 (412)
T COG5187 121 IAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK 184 (412)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 77777777777777777777776544441 23345666666665566666666665554
No 427
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.13 E-value=1.3e+02 Score=30.84 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=73.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCC----CCc--cHHHHHHHHHHHHH------------HcCCHHHH--HHHHH
Q 021175 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDG----DDQ--DLAQVYNALGVSYV------------REGKLDKG--ISQFE 246 (316)
Q Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~p--~~~~~~~~lg~~~~------------~~g~~~~A--~~~~~ 246 (316)
-.+.|.-....|++.+|++.|+..+-..+- ... ..+.-....+.-|. ..+..+++ +..|=
T Consensus 994 kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYF 1073 (1202)
T KOG0292|consen 994 KLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYF 1073 (1202)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHh
Confidence 345556666789999999999998875431 011 12222333332232 11233444 23333
Q ss_pred HHHHhCCCcHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCCCCC-CCCCC
Q 021175 247 TAVKLQPGYVTAWNNLG-DAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLYKGV-PVKSK 314 (316)
Q Consensus 247 ~al~~~p~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~~~A-~~~~~ 314 (316)
.-..+.|-+...-...+ .++.+.+++..|...-++.+++.|..+.+......+...-.+..++ +++.+
T Consensus 1074 t~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~eknp~Da~~l~yd 1143 (1202)
T KOG0292|consen 1074 THCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAEKNPTDAYELNYD 1143 (1202)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCcccccccCcc
Confidence 33345555433333333 5678999999999999999999998777765555444444444333 55543
No 428
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=69.44 E-value=34 Score=25.00 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 021175 183 SATEYFELGAVMLRRKFYPAATKYLLQAIE 212 (316)
Q Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 212 (316)
........|......||+++|.+...++.+
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~ 87 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAK 87 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344445555555556666666666666654
No 429
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=69.21 E-value=8.8 Score=20.14 Aligned_cols=24 Identities=33% Similarity=0.492 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 021175 260 NNLGDAYEKKKDLKSALKAFEEVL 283 (316)
Q Consensus 260 ~~lg~~~~~~g~~~~A~~~~~~al 283 (316)
..+-..|.+.|+.++|.+.|++..
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHh
Confidence 334444555555555555555443
No 430
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=69.12 E-value=14 Score=25.08 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=9.3
Q ss_pred HcCCHHHHHHHHHHHHH
Q 021175 234 REGKLDKGISQFETAVK 250 (316)
Q Consensus 234 ~~g~~~~A~~~~~~al~ 250 (316)
..|++++|+..|.++++
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44555555555555554
No 431
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=68.10 E-value=15 Score=20.63 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 021175 239 DKGISQFETA 248 (316)
Q Consensus 239 ~~A~~~~~~a 248 (316)
++|+++|++|
T Consensus 25 ~~A~~~~~~A 34 (39)
T PF08238_consen 25 EKAFKWYEKA 34 (39)
T ss_dssp HHHHHHHHHH
T ss_pred cchHHHHHHH
Confidence 3333333333
No 432
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=67.32 E-value=1.8 Score=41.60 Aligned_cols=103 Identities=16% Similarity=0.089 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhCCC-cHHH
Q 021175 183 SATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ-DLAQVYNALGVSYVREGKLDKGISQFETA--VKLQPG-YVTA 258 (316)
Q Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a--l~~~p~-~~~~ 258 (316)
.......-+..+...|+++.|...+.+.-.. .+.| .........+.+....|++++|++.+... ..+.+. ....
T Consensus 23 ~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~--~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~ 100 (536)
T PF04348_consen 23 RAQLLLLAARALLQEGDWAQAQALLNQLDPQ--QLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARY 100 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcccc--cCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHH
Confidence 4455566678888889999998888766621 0222 33445566788888899999999988741 112121 1344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 021175 259 WNNLGDAYEKKKDLKSALKAFEEVLLFDP 287 (316)
Q Consensus 259 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p 287 (316)
+...+.++...|+.-+|.+.+-+.-.+-+
T Consensus 101 ~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~ 129 (536)
T PF04348_consen 101 HQLRAQAYEQQGDPLAAARERIALDPLLP 129 (536)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 55667888888888777776554444433
No 433
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=66.95 E-value=15 Score=24.22 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 021175 187 YFELGAVMLRRKFYPAATKYLLQAIEK 213 (316)
Q Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 213 (316)
+...|.-+-..|++++|+++|.++++.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344455566788899998888888874
No 434
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=66.84 E-value=13 Score=20.40 Aligned_cols=14 Identities=29% Similarity=0.223 Sum_probs=7.0
Q ss_pred ChHHHHHHHHHHHH
Q 021175 199 FYPAATKYLLQAIE 212 (316)
Q Consensus 199 ~~~~A~~~~~~al~ 212 (316)
+.++|..+++++.+
T Consensus 20 d~~~A~~~~~~Aa~ 33 (36)
T smart00671 20 DLEKALEYYKKAAE 33 (36)
T ss_pred CHHHHHHHHHHHHH
Confidence 44555555555543
No 435
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.54 E-value=1e+02 Score=28.46 Aligned_cols=90 Identities=16% Similarity=0.028 Sum_probs=64.3
Q ss_pred HHHhhhHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---CC-ccHHHHHHHHHHHH
Q 021175 160 VLVRRELDLSAKELQEQVRSGD---ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG---DD-QDLAQVYNALGVSY 232 (316)
Q Consensus 160 ~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~-p~~~~~~~~lg~~~ 232 (316)
+...|+.+.|++.|.++..... +....+.++-.+-...|+|..-..+-.+|.+.... .. .-.+.....-|.+.
T Consensus 160 y~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~ 239 (466)
T KOG0686|consen 160 YLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLAN 239 (466)
T ss_pred HHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHH
Confidence 3489999999999999766443 34667888888889999999888888888873100 00 01123444557777
Q ss_pred HHcCCHHHHHHHHHHHH
Q 021175 233 VREGKLDKGISQFETAV 249 (316)
Q Consensus 233 ~~~g~~~~A~~~~~~al 249 (316)
...++|..|.+++-.+.
T Consensus 240 L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 240 LLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 77889999999986654
No 436
>PRK11619 lytic murein transglycosylase; Provisional
Probab=66.16 E-value=1.4e+02 Score=29.54 Aligned_cols=108 Identities=6% Similarity=-0.025 Sum_probs=71.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------------
Q 021175 192 AVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY---------------- 255 (316)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------- 255 (316)
......++++....++...-. .........|-+|.++...|+.++|...|+++.... ++
T Consensus 320 r~Al~~~dw~~~~~~i~~L~~----~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~-~fYG~LAa~~Lg~~~~~~ 394 (644)
T PRK11619 320 RMALGTGDRRGLNTWLARLPM----EAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQR-GFYPMVAAQRLGEEYPLK 394 (644)
T ss_pred HHHHHccCHHHHHHHHHhcCH----hhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCC-CcHHHHHHHHcCCCCCCC
Confidence 344577888777666666433 233567788888999888999999999988875421 11
Q ss_pred ------H------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175 256 ------V------TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY 306 (316)
Q Consensus 256 ------~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~ 306 (316)
. ..-...+..+...|+..+|...+..+++. .++.....++.+....|.+
T Consensus 395 ~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~ 455 (644)
T PRK11619 395 IDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWW 455 (644)
T ss_pred CCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCH
Confidence 0 01234456677889999999888887764 2345566666666666654
No 437
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=65.49 E-value=16 Score=24.80 Aligned_cols=15 Identities=13% Similarity=0.423 Sum_probs=8.5
Q ss_pred CCHHHHHHHHHHHHH
Q 021175 236 GKLDKGISQFETAVK 250 (316)
Q Consensus 236 g~~~~A~~~~~~al~ 250 (316)
|+|++|...|.++++
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555554
No 438
>PF13041 PPR_2: PPR repeat family
Probab=65.40 E-value=19 Score=21.82 Aligned_cols=30 Identities=33% Similarity=0.420 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 256 VTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 256 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
...|..+-..|.+.|++++|.+.|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 345666777788888888888888887764
No 439
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=65.38 E-value=19 Score=24.17 Aligned_cols=17 Identities=12% Similarity=0.534 Sum_probs=8.3
Q ss_pred HcCCHHHHHHHHHHHHH
Q 021175 234 REGKLDKGISQFETAVK 250 (316)
Q Consensus 234 ~~g~~~~A~~~~~~al~ 250 (316)
..|++++|+.+|.++++
T Consensus 18 ~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 18 EDGNYEEALELYKEALD 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 33555555555544443
No 440
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=64.74 E-value=1.1e+02 Score=27.60 Aligned_cols=135 Identities=15% Similarity=0.096 Sum_probs=88.9
Q ss_pred HhhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 021175 162 VRRELDLSAKELQEQVRSGD-ASATEYFELGAVMLR-----RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVRE 235 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~ 235 (316)
+.+-.+++...+.+++.... .--...-.++.++.. .-+|..=..+|+.... +.| ++.+-.|.+.+....
T Consensus 268 ~r~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~----~ap-SPvV~LNRAVAla~~ 342 (415)
T COG4941 268 DRALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ----AAP-SPVVTLNRAVALAMR 342 (415)
T ss_pred hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH----hCC-CCeEeehHHHHHHHh
Confidence 44556678888888877543 222222233333332 2355555555655555 233 355666777777777
Q ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 021175 236 GKLDKGISQFETAVKL--QPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKD 301 (316)
Q Consensus 236 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~ 301 (316)
.-.+.++...+....- -.++...+-..|..+.++|+.++|...|++++.+.++..+..+....+..
T Consensus 343 ~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~~ 410 (415)
T COG4941 343 EGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLDR 410 (415)
T ss_pred hhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 7777888777665543 22345566778999999999999999999999999998887776665543
No 441
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=64.70 E-value=16 Score=19.53 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 021175 187 YFELGAVMLRRKFYPAATKYLLQAIE 212 (316)
Q Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~ 212 (316)
|..+-..|.+.|++++|.+.|++..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555556666666666655444
No 442
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=64.07 E-value=43 Score=30.06 Aligned_cols=109 Identities=21% Similarity=0.299 Sum_probs=71.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhCCCcHHHHHHHH
Q 021175 188 FELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ--DLAQVYNALGVSYVREGKLDK--GISQFETAVKLQPGYVTAWNNLG 263 (316)
Q Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p--~~~~~~~~lg~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~~lg 263 (316)
..-|..+....||..|..+|-+|.+-+...+. .-....-.+=.+-.-.+..++ ++-.-+.+++.+..+.++.-..+
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA 292 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA 292 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence 34456666678999999999999996654222 212222222223333455554 44445677887778888888888
Q ss_pred HHHHH--cCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175 264 DAYEK--KKDLKSALKAFEEVLLFDPNNKVARPRRDAL 299 (316)
Q Consensus 264 ~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l 299 (316)
.++.+ +.+|+.|+..|+.-+..+| ..+..+..+
T Consensus 293 eA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~L 327 (411)
T KOG1463|consen 293 EAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSL 327 (411)
T ss_pred HHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHH
Confidence 88865 6789999999998888766 444444433
No 443
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=63.86 E-value=1.2e+02 Score=27.82 Aligned_cols=52 Identities=17% Similarity=0.105 Sum_probs=38.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHH--HcCChHHHHHHHHH
Q 021175 158 RQVLVRRELDLSAKELQEQVRSGDA-----SATEYFELGAVML--RRKFYPAATKYLLQ 209 (316)
Q Consensus 158 ~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~--~~g~~~~A~~~~~~ 209 (316)
+..++.++|..|.+.|+++....+. ....+..+...|. ..-++++|.+++++
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4456899999999999999987542 2344555555554 56788999999985
No 444
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.61 E-value=55 Score=31.74 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=50.5
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHH-------
Q 021175 194 MLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ--------PGYVTA------- 258 (316)
Q Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~------- 258 (316)
..+.|+++.|.+...++ ++..-|..||.+....+++..|.+++.++-+.. .++.+.
T Consensus 647 al~lgrl~iA~~la~e~---------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA---------NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hhhcCcHHHHHHHHHhh---------cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHH
Confidence 34556666665544333 345567778888888888888888888876542 222222
Q ss_pred -----HHHHH-HHHHHcCCHHHHHHHHHHH
Q 021175 259 -----WNNLG-DAYEKKKDLKSALKAFEEV 282 (316)
Q Consensus 259 -----~~~lg-~~~~~~g~~~~A~~~~~~a 282 (316)
.+|++ .+|...|++++..+.+.+.
T Consensus 718 ~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 23444 3567788888887777654
No 445
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=63.56 E-value=11 Score=25.71 Aligned_cols=32 Identities=9% Similarity=0.205 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 021175 239 DKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 239 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (316)
.+|+..+++|++.+. .|++++|..+|..+++.
T Consensus 4 ~~A~~l~~~Ave~d~---------------~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEKEE---------------EGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HhhHHHHHHHHHHHHHH
Confidence 567777777766433 36666666666666543
No 446
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.76 E-value=1.5e+02 Score=28.88 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=35.8
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEK 213 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 213 (316)
+.|+++.|.+... ..+...-|..||.+....+++..|.+++.++...
T Consensus 649 ~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 649 KLGRLDIAFDLAV-----EANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hcCcHHHHHHHHH-----hhcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 4555555554333 3356677999999999999999999999998773
No 447
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=62.58 E-value=41 Score=25.50 Aligned_cols=117 Identities=11% Similarity=0.043 Sum_probs=70.8
Q ss_pred HHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 161 LVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 161 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
...+.....+.+++..+..++.++..+..+...|.+. +.++.+++++.-.. ..+++ ..+....+.+-+++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~~~~---~yd~~------~~~~~c~~~~l~~~ 87 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDNKSN---HYDIE------KVGKLCEKAKLYEE 87 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHhccc---cCCHH------HHHHHHHHcCcHHH
Confidence 3567889999999999999888888888888888754 34555566552111 01221 13444556666777
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175 241 GISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDAL 299 (316)
Q Consensus 241 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l 299 (316)
++..+.+. ..+.++. -.+....++++.|+++.++ +++++.|..+...
T Consensus 88 ~~~l~~k~----~~~~~Al---~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~ 134 (140)
T smart00299 88 AVELYKKD----GNFKDAI---VTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKA 134 (140)
T ss_pred HHHHHHhh----cCHHHHH---HHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence 77766553 1111111 1112233788888888876 3456677666543
No 448
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.16 E-value=45 Score=29.92 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 021175 169 SAKELQEQVRSGDASATE---YFELGAVMLRRKFYPAATKYLLQAIEK 213 (316)
Q Consensus 169 A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~ 213 (316)
+...|++..+.-|+.... -.+-|.++...++|.+....+..+-+.
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~ 87 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQR 87 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHH
Confidence 456677777766654332 235677888888888888888777664
No 449
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=61.70 E-value=1.5e+02 Score=28.34 Aligned_cols=131 Identities=11% Similarity=0.055 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHHHcCCHHHHH
Q 021175 165 ELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG--DDQDLAQVYNALGVSYVREGKLDKGI 242 (316)
Q Consensus 165 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~p~~~~~~~~lg~~~~~~g~~~~A~ 242 (316)
..++--...++..+.+-++...-..++..|.+ ++-+.+..+|.+++..+-. -+...-+.|-.+-. +--.+.+.-.
T Consensus 113 ~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl 189 (711)
T COG1747 113 GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFL 189 (711)
T ss_pred CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHH
Confidence 44444555666666666666666777777766 8899999999999985311 01111222222111 1112333322
Q ss_pred HHHHHHHHhCC-CcHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 021175 243 SQFETAVKLQP-GYVTAWN-NLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDA 298 (316)
Q Consensus 243 ~~~~~al~~~p-~~~~~~~-~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~ 298 (316)
...++.-.... ....+.+ ..-.-|....++++|++.....++.+..+..++.++-.
T Consensus 190 ~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 190 RLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 22222222111 1122222 22244556788899999999999988887777666543
No 450
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=61.19 E-value=79 Score=24.86 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC------C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 021175 222 AQVYNALGVSYVREGKLDKGISQFETAVK-LQ------P-GYVTAWNNLGDAYEKKKDLKSALKAFEEVLL 284 (316)
Q Consensus 222 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~------p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 284 (316)
.......+.-..+.|+.++|.+.++.+-. ++ | .........+..+...|++++|...+..++.
T Consensus 75 ~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 75 KKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 44556667778888888888888766532 11 1 1134556677788888999988888887763
No 451
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=60.93 E-value=1.3e+02 Score=28.04 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=61.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---C-ccHHHH--------HHHHHHHHH-HcCC-----HHHHHHHHHHH
Q 021175 187 YFELGAVMLRRKFYPAATKYLLQAIEKWDGD---D-QDLAQV--------YNALGVSYV-REGK-----LDKGISQFETA 248 (316)
Q Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~-p~~~~~--------~~~lg~~~~-~~g~-----~~~A~~~~~~a 248 (316)
....|.-+...|++.+|+..|+..+...+-. + .+..++ -|-+|.... .+++ .++....++-+
T Consensus 207 ~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELA 286 (422)
T PF06957_consen 207 RLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELA 286 (422)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 3345666778899999999999998864311 1 111111 122332221 1111 12222222222
Q ss_pred H-----HhCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC-CCCCCCCCC
Q 021175 249 V-----KLQPGYVTAWNNLGD-AYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY-KGVPVKSKD 315 (316)
Q Consensus 249 l-----~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~-~~A~~~~~~ 315 (316)
. ++.|.+...-.+.|+ ..++.++|.-|....++.+++.|....+......+...-.+- ++.+++.++
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~~~tDa~~i~yD~ 360 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACERNPTDAHEIDYDE 360 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCCS--BSS--S--T
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCceecCCCC
Confidence 2 233433333333333 345789999999999999999998765544443333332222 334555544
No 452
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.04 E-value=60 Score=28.91 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCh
Q 021175 221 LAQVYNALGVSYVREGKLDKGISQFETAVKLQPGY--------VTAWNNLGDAYEKKKDLKSALKAFEEVLL--FDPNNK 290 (316)
Q Consensus 221 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~ 290 (316)
-..+...|+.+|.+.+++..|-+.+. ++.++... ...+..+|..|.+.++..+|..+..++-- .+..|+
T Consensus 102 v~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne 180 (399)
T KOG1497|consen 102 VASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNE 180 (399)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCH
Confidence 35677889999999999999988873 34444321 34677899999999999999888877642 244566
Q ss_pred hHHHHHHHHHhhCCC
Q 021175 291 VARPRRDALKDRVPL 305 (316)
Q Consensus 291 ~a~~~l~~l~~~~~~ 305 (316)
+....+..++.+.-|
T Consensus 181 ~Lqie~kvc~ARvlD 195 (399)
T KOG1497|consen 181 QLQIEYKVCYARVLD 195 (399)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666555555544433
No 453
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=59.45 E-value=94 Score=30.18 Aligned_cols=79 Identities=6% Similarity=0.047 Sum_probs=61.8
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 241 (316)
+++..+.+....+.-+.-....+......+..+-..++.++|-.+|++.+. -+|+ +.++..+.-+.+.|-...|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~ 93 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIA----QNND--EARYEYARRLYNTGLAKDA 93 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHH----hCCc--chHHHHHHHHHhhhhhhHH
Confidence 455566666666655555555666777778888888999999999999998 4666 7788888889999999999
Q ss_pred HHHHH
Q 021175 242 ISQFE 246 (316)
Q Consensus 242 ~~~~~ 246 (316)
...++
T Consensus 94 ~~~~~ 98 (578)
T PRK15490 94 QLILK 98 (578)
T ss_pred HHHHH
Confidence 88887
No 454
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=58.82 E-value=95 Score=30.18 Aligned_cols=66 Identities=8% Similarity=-0.032 Sum_probs=53.1
Q ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 021175 218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288 (316)
Q Consensus 218 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 288 (316)
....+......+..+...|+.++|-++|++.+..+|+ +.++..+.-+.+.|-...|...++ ++.|.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 103 (578)
T PRK15490 38 EALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK---KVSNG 103 (578)
T ss_pred cchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH---HhCcc
Confidence 3445566666788888999999999999999999998 778888888888888888888777 44444
No 455
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=58.44 E-value=25 Score=24.01 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=18.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh
Q 021175 189 ELGAVMLRRKFYPAATKYLLQAIEK 213 (316)
Q Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~ 213 (316)
..|.-+-..|+|++|+.+|.++++.
T Consensus 11 ~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 11 RLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3344445678999999999988884
No 456
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=58.27 E-value=75 Score=28.53 Aligned_cols=93 Identities=9% Similarity=0.001 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHHHHHHcCCHHHH
Q 021175 165 ELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQ---DLAQVYNALGVSYVREGKLDKG 241 (316)
Q Consensus 165 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p---~~~~~~~~lg~~~~~~g~~~~A 241 (316)
+|..-...|+-.....| ++.+-.|.+.+..+..-.+.++...+...+ .| .+..++.-.|..+.+.|+.++|
T Consensus 311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~-----~~~L~gy~~~h~~RadlL~rLgr~~eA 384 (415)
T COG4941 311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLA-----RPRLDGYHLYHAARADLLARLGRVEEA 384 (415)
T ss_pred ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhc-----ccccccccccHHHHHHHHHHhCChHHH
Confidence 45555555554444444 444555666666655556667776666655 32 3344566689999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHH
Q 021175 242 ISQFETAVKLQPGYVTAWNNLG 263 (316)
Q Consensus 242 ~~~~~~al~~~p~~~~~~~~lg 263 (316)
-+.|++++.+.++..+..+...
T Consensus 385 r~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 385 RAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred HHHHHHHHHhcCChHHHHHHHH
Confidence 9999999999998877665544
No 457
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.26 E-value=49 Score=23.95 Aligned_cols=29 Identities=10% Similarity=-0.078 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 021175 184 ATEYFELGAVMLRRKFYPAATKYLLQAIE 212 (316)
Q Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 212 (316)
+..+..+|..|...|+.+.|..-|+.--+
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKa 100 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKA 100 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence 44556666666666666666666665555
No 458
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=57.99 E-value=49 Score=28.06 Aligned_cols=50 Identities=16% Similarity=0.024 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCC----CCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 021175 201 PAATKYLLQAIEKWDG----DDQDLAQVYNALGVSYVR-EGKLDKGISQFETAVK 250 (316)
Q Consensus 201 ~~A~~~~~~al~~~~~----~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~ 250 (316)
++|.+.|++|++.... .+|-.-....|.+..|+. .|+.++|++..++|++
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6788888888876433 445555566677766644 7999999988888765
No 459
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.93 E-value=37 Score=29.46 Aligned_cols=54 Identities=7% Similarity=-0.005 Sum_probs=39.4
Q ss_pred cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175 197 RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAVK 250 (316)
Q Consensus 197 ~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 250 (316)
..+.++|+..|++.+++-+.-...-..+.-.+-.+++++|+|++-.+.|++.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 457889999999999942211112345667777888899999999999988876
No 460
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=57.72 E-value=81 Score=23.85 Aligned_cols=58 Identities=10% Similarity=0.102 Sum_probs=36.5
Q ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175 218 DQDLAQVYNALGVSYVREGKLDKGISQFETAVKLQ--PGYVTAWNNLGDAYEKKKDLKSALKAFEE 281 (316)
Q Consensus 218 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 281 (316)
+|.....|...+... ++..+.|+...+.. ...+..|...|..+...|++.+|.+.|+.
T Consensus 65 D~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 65 DPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 555555665555432 33455565555433 44566677778888888888888887764
No 461
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.39 E-value=1.5e+02 Score=26.81 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175 259 WNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY 306 (316)
Q Consensus 259 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~ 306 (316)
|.++...|...+++-.+...|..++-..|+. +.....+.+....|-+
T Consensus 197 Y~ny~~~yea~~~l~npYv~Yl~~lf~a~n~-dv~kg~~~~~e~~gi~ 243 (449)
T COG3014 197 YSNYLDKYEAYQGLLNPYVSYLSGLFYALNG-DVNKGLGYLNEAYGIS 243 (449)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHhcccCc-cHhHHHHHHHHHhccC
Confidence 4445555556666666666666666666665 4555555555444433
No 462
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=57.37 E-value=60 Score=28.78 Aligned_cols=16 Identities=6% Similarity=0.372 Sum_probs=9.4
Q ss_pred cCCHHHHHHHHHHHHH
Q 021175 235 EGKLDKGISQFETAVK 250 (316)
Q Consensus 235 ~g~~~~A~~~~~~al~ 250 (316)
.++|++|...|+.+++
T Consensus 23 a~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 23 AKNYEEALRLYQNALE 38 (439)
T ss_pred hhchHHHHHHHHHHHH
Confidence 3566666666666555
No 463
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.60 E-value=45 Score=33.52 Aligned_cols=54 Identities=17% Similarity=0.351 Sum_probs=40.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175 192 AVMLRRKFYPAATKYLLQAIEKWDGDDQ-DLAQVYNALGVSYVREGKLDKGISQFETAVK 250 (316)
Q Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 250 (316)
....+..-|+-|+...+.--. ++ ...+++...|.-++.+|++++|...|-+++.
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~-----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHL-----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 445566667777766554332 44 3466788889999999999999999999886
No 464
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.05 E-value=1.2e+02 Score=27.81 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccH-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 021175 186 EYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDL-AQVYNAL--GVSYVREGKLDKGISQFETAVKL 251 (316)
Q Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~-~~~~~~l--g~~~~~~g~~~~A~~~~~~al~~ 251 (316)
-....+...+..++|..|.+.++...+. +.+.. ...+..+ |..++..-++++|.+.+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRR---LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556677788999999999999999984 12222 2344444 45557788999999999998765
No 465
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.68 E-value=69 Score=31.99 Aligned_cols=55 Identities=4% Similarity=0.007 Sum_probs=34.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHH
Q 021175 157 IRQVLVRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRK-FYPAATKYLLQAIE 212 (316)
Q Consensus 157 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~ 212 (316)
..++.+.+..+.|++.|+++.+..|..- +-.|++..+...| +|+...+.-+-++.
T Consensus 294 ~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~~Fens~Elq~Igmk 349 (1226)
T KOG4279|consen 294 ASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGEHFENSLELQQIGMK 349 (1226)
T ss_pred ccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhhhccchHHHHHHHHH
Confidence 3444567778899999999999988532 3356666665554 34444444444443
No 466
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=54.87 E-value=83 Score=30.93 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=30.0
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 021175 193 VMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETA 248 (316)
Q Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 248 (316)
.+...++|++|....++--+ ..+.+|+..|.-+....+++||.+.|.+|
T Consensus 782 lHve~~~W~eAFalAe~hPe-------~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEKHPE-------FKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred heeecccchHhHhhhhhCcc-------ccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 44566788887666544333 23346666666666677777776666554
No 467
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=54.56 E-value=1.5e+02 Score=26.88 Aligned_cols=48 Identities=8% Similarity=-0.145 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 021175 163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQA 210 (316)
Q Consensus 163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 210 (316)
....-+|+..++.++..+|.+......+..+|...|-.+.|.+.|...
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 455668999999999999999999999999999999999999999643
No 468
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=54.01 E-value=68 Score=21.86 Aligned_cols=24 Identities=8% Similarity=0.029 Sum_probs=16.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh
Q 021175 190 LGAVMLRRKFYPAATKYLLQAIEK 213 (316)
Q Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~ 213 (316)
.|.-+-..|+|++|+.+|.++++.
T Consensus 12 ~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 12 RAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH
Confidence 334445677788887777777763
No 469
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.89 E-value=1.6e+02 Score=27.46 Aligned_cols=106 Identities=20% Similarity=0.184 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----------cCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHH
Q 021175 146 LGLLGVGTFFVIRQVLVRRELDLSAKELQEQVR-----------SGDASATEYFELGAVMLRRKF---YPAATKYLLQAI 211 (316)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al 211 (316)
..+++++..-.++..+....|++|...+-.+-+ .-.+.+.....+.++|+..++ .++|..-+.++-
T Consensus 159 Almmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~ 238 (568)
T KOG2561|consen 159 ALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRAR 238 (568)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHH
Confidence 456777777788888899999999887766543 233445555566677777654 344544444443
Q ss_pred HhcC---------------CCCccH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 021175 212 EKWD---------------GDDQDL---AQVYNALGVSYVREGKLDKGISQFETAVKL 251 (316)
Q Consensus 212 ~~~~---------------~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 251 (316)
+-+. .-.|.. ...+..-|.+.+.+|+-++|.++++.+...
T Consensus 239 kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 239 KGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3211 023332 234555699999999999999999998753
No 470
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=53.07 E-value=2.2e+02 Score=27.56 Aligned_cols=66 Identities=14% Similarity=-0.112 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 021175 198 KFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREG--KLDKGISQFETAVKLQPGYVTAWNNLGDAYEK 268 (316)
Q Consensus 198 g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 268 (316)
|+.++|+...++-.. +..........|.++..-+ .-+.=..+|++.++++|........+...+..
T Consensus 323 ~~l~eal~~~e~~c~-----~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~ 390 (547)
T PF14929_consen 323 GRLKEALNELEKFCI-----SSTCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK 390 (547)
T ss_pred ccHHHHHHHHHHhcc-----CCCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh
Confidence 788888888777654 3334444444555555555 67777888999999999987777777666655
No 471
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=52.76 E-value=88 Score=22.77 Aligned_cols=38 Identities=11% Similarity=0.087 Sum_probs=29.8
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKF 199 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 199 (316)
..||+++|.+...++-+..+...-.+..-+.+...+||
T Consensus 71 ~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 71 AEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 79999999999999987766666666666677666664
No 472
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=52.56 E-value=1e+02 Score=27.46 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 021175 166 LDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIE 212 (316)
Q Consensus 166 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 212 (316)
.++|+...++++..+. .++|++|..+|+.+++
T Consensus 7 l~kaI~lv~kA~~eD~---------------a~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDN---------------AKNYEEALRLYQNALE 38 (439)
T ss_pred HHHHHHHHHHHhhhcc---------------hhchHHHHHHHHHHHH
Confidence 3556666666665542 3556666666666665
No 473
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=52.45 E-value=42 Score=30.50 Aligned_cols=40 Identities=23% Similarity=0.139 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 021175 240 KGISQFETAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAF 279 (316)
Q Consensus 240 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 279 (316)
+|+-.++.+++.+|.+......+..+|...|-.+.|.+.|
T Consensus 201 ~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~ 240 (365)
T PF09797_consen 201 QAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHY 240 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4555555555555555555555555555555555555544
No 474
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=52.33 E-value=33 Score=30.38 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=11.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 021175 189 ELGAVMLRRKFYPAATKYLLQAIE 212 (316)
Q Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~ 212 (316)
..|....+.|..-+|+..|+.|++
T Consensus 24 ~~av~~Eq~G~l~dai~fYR~Alq 47 (366)
T KOG2997|consen 24 EKAVLKEQDGSLYDAINFYRDALQ 47 (366)
T ss_pred HHHHHHhhcCcHHHHHHHHHhhhc
Confidence 334444444555555555555554
No 475
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=52.05 E-value=1.2e+02 Score=27.76 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=47.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCCcc--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 021175 189 ELGAVMLRRKFYPAATKYLLQAIEKWDGDDQD--------LAQVYNALGVSYVREGKLDKGISQFETAVKLQPG 254 (316)
Q Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 254 (316)
.+-.+|.+.++.+-+...++..... ..|+ ....+|.+|.+|....++.+|...+++|+..-|.
T Consensus 182 lL~~iY~Rl~~~~l~~n~lka~~~v---s~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 182 LLFQIYLRLGRFKLCENFLKASKEV---SMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHhccHHHHHHHHHhcccc---cccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 3445788899998888776544431 1222 2456788999999999999999999999988776
No 476
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=51.95 E-value=2.1e+02 Score=26.98 Aligned_cols=123 Identities=12% Similarity=0.039 Sum_probs=81.0
Q ss_pred HhhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHH
Q 021175 162 VRRELDLSAKELQEQVRSGDASATEYFELGA-VMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDK 240 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~ 240 (316)
+..-.+.|.+.|-++-+..--..+++..-|. -+...|++.-|-..|+-.+. ..|+++..-+..=..+...++-+.
T Consensus 409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~----~f~d~~~y~~kyl~fLi~inde~n 484 (660)
T COG5107 409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLL----KFPDSTLYKEKYLLFLIRINDEEN 484 (660)
T ss_pred HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHH----hCCCchHHHHHHHHHHHHhCcHHH
Confidence 5556677777777766554233344443333 35567999999999999998 466666655555566778899999
Q ss_pred HHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 021175 241 GISQFETAVKLQPGY--VTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPN 288 (316)
Q Consensus 241 A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 288 (316)
|...|++++..-.++ ...|-..-..-..-|+...+...=++..+.-|.
T Consensus 485 araLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 485 ARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 999999888643332 334444444445567777777666666666665
No 477
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=51.57 E-value=39 Score=18.78 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHH
Q 021175 271 DLKSALKAFEEVLLFDPNNKVARPRRD 297 (316)
Q Consensus 271 ~~~~A~~~~~~al~~~p~~~~a~~~l~ 297 (316)
.++.|...|++.+...|+ ...|...+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 355666666666666654 44444433
No 478
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=51.11 E-value=86 Score=29.26 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhCCCC
Q 021175 257 TAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARPRRDALKDRVPLY 306 (316)
Q Consensus 257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~l~~~~~~~ 306 (316)
..+..|=.+|.+.|+..+|++.-...+-.+|++..+..++..-...+|.-
T Consensus 134 ~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s 183 (471)
T KOG4459|consen 134 LPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVS 183 (471)
T ss_pred hHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCC
Confidence 35666777888888888888888888888888888888887666555544
No 479
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=50.99 E-value=24 Score=32.17 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhc
Q 021175 238 LDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKD------------LKSALKAFEEVLLF 285 (316)
Q Consensus 238 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~ 285 (316)
...|++++++|.. .++|+.|.++|.++..+|+ |.+|.+++++|-..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 3567777777766 4556677777777766665 45666666666543
No 480
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=50.89 E-value=93 Score=23.53 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 021175 180 GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFET 247 (316)
Q Consensus 180 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 247 (316)
+|.....|...+... +++.+.|.-.... .+.-..+..|...|..+...|++.+|.+.|+.
T Consensus 65 D~RyLkiWi~ya~~~------~dp~~if~~L~~~--~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 65 DPRYLKIWLKYADNC------DEPRELFQFLYSK--GIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHHHHhc------CCHHHHHHHHHHC--CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 334445666666542 4466677666652 14556788888899999999999999999875
No 481
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=50.33 E-value=1.7e+02 Score=25.69 Aligned_cols=130 Identities=12% Similarity=0.091 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH------HHcCC
Q 021175 166 LDLSAKELQEQVRSGDASATEYFELGAVMLRR--KFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSY------VREGK 237 (316)
Q Consensus 166 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~------~~~g~ 237 (316)
++.-...+..+++.+|..-..|...-.++..- .++..-....++.++ .++.+..+|...-.+. ..-.+
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld----~DsrNyH~W~YR~~vl~~ie~~~N~S~ 165 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLD----SDSRNYHVWSYRRWVLRTIEDLFNFSD 165 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhc----ccccccceeeeEeeeeecchhhccchh
Confidence 45556678888999999888888777776654 667777778888888 5777766654332222 33344
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHH---HHHHHHcCC------HHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 021175 238 LDKGISQFETAVKLQPGYVTAWNNL---GDAYEKKKD------LKSALKAFEEVLLFDPNNKVARPRRDAL 299 (316)
Q Consensus 238 ~~~A~~~~~~al~~~p~~~~~~~~l---g~~~~~~g~------~~~A~~~~~~al~~~p~~~~a~~~l~~l 299 (316)
+.+-.++-..++..|+.+..+|... -......|+ +++-+++.-.++-.+|++..+|..+.-+
T Consensus 166 ~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 166 LKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred HHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 5555666777888899998888766 222333444 4566777777788899998888766433
No 482
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.12 E-value=1.1e+02 Score=23.06 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021175 202 AATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKLDKGISQFETAV 249 (316)
Q Consensus 202 ~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 249 (316)
++.+.|+..... .+.-..+..|...|..+...|++++|.+.|++++
T Consensus 81 ~~~~if~~l~~~--~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSK--GIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHH--TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc--CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 888888877763 1456788899999999999999999999999875
No 483
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=49.22 E-value=41 Score=17.89 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=5.8
Q ss_pred HHHcCCHHHHHHHHH
Q 021175 232 YVREGKLDKGISQFE 246 (316)
Q Consensus 232 ~~~~g~~~~A~~~~~ 246 (316)
+.+.|+++.|.+.++
T Consensus 11 ~~~~g~~~~a~~~~~ 25 (34)
T PF13812_consen 11 CAKAGDPDAALQLFD 25 (34)
T ss_pred HHHCCCHHHHHHHHH
Confidence 333334433333333
No 484
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=48.79 E-value=56 Score=24.56 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=17.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 021175 228 LGVSYVREGKLDKGISQFETAVKLQPGY 255 (316)
Q Consensus 228 lg~~~~~~g~~~~A~~~~~~al~~~p~~ 255 (316)
+|..+...|++++|..+|-+|+...|+-
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 5666666666666666666666665553
No 485
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=48.75 E-value=1.3e+02 Score=23.62 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=64.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHc-------CCCC--------------------------------HHHHHHHHHHHHHc
Q 021175 157 IRQVLVRRELDLSAKELQEQVRS-------GDAS--------------------------------ATEYFELGAVMLRR 197 (316)
Q Consensus 157 ~~~~~~~~~~~~A~~~~~~al~~-------~p~~--------------------------------~~~~~~lg~~~~~~ 197 (316)
.+..+..|+.++|.+.+.++... +|.. .......++-..+.
T Consensus 9 Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~l~~ 88 (155)
T PF10938_consen 9 ARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANELLKK 88 (155)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHHHhC
Confidence 44456889999999888887641 1111 34677888889999
Q ss_pred CChHHHHHHHHHHHHhcCC---CCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 021175 198 KFYPAATKYLLQAIEKWDG---DDQ-DLAQVYNALGVSYVREGKLDKGISQFETAVK 250 (316)
Q Consensus 198 g~~~~A~~~~~~al~~~~~---~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 250 (316)
|+.+.|.+.++-+-.-..- .-| .........+..+...|++++|...+..+++
T Consensus 89 g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 89 GDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp T-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 9999999888766441100 112 3445566788899999999999999999875
No 486
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=48.20 E-value=51 Score=30.19 Aligned_cols=14 Identities=14% Similarity=0.097 Sum_probs=8.2
Q ss_pred CHHHHHHHHHHHHH
Q 021175 237 KLDKGISQFETAVK 250 (316)
Q Consensus 237 ~~~~A~~~~~~al~ 250 (316)
-|.+|.+.+.+|-.
T Consensus 377 ~Y~eAE~iL~kAN~ 390 (404)
T PF12753_consen 377 AYKEAEKILKKANK 390 (404)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 35666666666654
No 487
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=48.15 E-value=44 Score=22.46 Aligned_cols=23 Identities=22% Similarity=0.060 Sum_probs=16.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHh
Q 021175 191 GAVMLRRKFYPAATKYLLQAIEK 213 (316)
Q Consensus 191 g~~~~~~g~~~~A~~~~~~al~~ 213 (316)
|..+-..|++++|+.+|.++++.
T Consensus 15 Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 15 ALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445578888888888888874
No 488
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=47.25 E-value=95 Score=26.53 Aligned_cols=51 Identities=10% Similarity=-0.113 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHhcCC-C---CccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 021175 200 YPAATKYLLQAIEKWDG-D---DQDLAQVYNALGVSYVR-EGKLDKGISQFETAVK 250 (316)
Q Consensus 200 ~~~A~~~~~~al~~~~~-~---~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~ 250 (316)
-++|.+.|++|.+.... + +|-......|.+..|+. +++.++|.+..++|++
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788888888876432 3 34344455666666554 6888888888777765
No 489
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=46.64 E-value=1.2e+02 Score=22.75 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=15.6
Q ss_pred cCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 021175 197 RKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYV 233 (316)
Q Consensus 197 ~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~ 233 (316)
.+.......+++..+. .++.++..+..+..+|.
T Consensus 20 ~~~~~~l~~yLe~~~~----~~~~~~~~~~~li~ly~ 52 (140)
T smart00299 20 RNLLEELIPYLESALK----LNSENPALQTKLIELYA 52 (140)
T ss_pred CCcHHHHHHHHHHHHc----cCccchhHHHHHHHHHH
Confidence 3445555555555554 23344444444444444
No 490
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=45.60 E-value=90 Score=23.80 Aligned_cols=36 Identities=8% Similarity=0.187 Sum_probs=21.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 021175 232 YVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYE 267 (316)
Q Consensus 232 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 267 (316)
++.+-+.+.|.+.|++.++.+|++..++..+-....
T Consensus 86 ~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 86 WIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp HHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 444556677777777777777777777666554443
No 491
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.09 E-value=1.2e+02 Score=22.06 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 021175 221 LAQVYNALGVSYVREGKLDKGISQFETAVKLQPGYVT 257 (316)
Q Consensus 221 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 257 (316)
-+.++..||..|.+.|+.+.|...|+.=-.+.|....
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 3456667777777777777777777776666776543
No 492
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.07 E-value=1.9e+02 Score=24.47 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHh-----CCCcH---HHHHHHHHHHH-HcCCHHHHHHHHHHHHhc---------CCCChhHHHHHHHHH
Q 021175 239 DKGISQFETAVKL-----QPGYV---TAWNNLGDAYE-KKKDLKSALKAFEEVLLF---------DPNNKVARPRRDALK 300 (316)
Q Consensus 239 ~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~-~~g~~~~A~~~~~~al~~---------~p~~~~a~~~l~~l~ 300 (316)
++|.+.|++|+++ .|.+| ....|.+..|+ -+|+.++|+...+++++. +....++...+..+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLr 222 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLR 222 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHH
Confidence 6788889988864 56665 34456666654 489999999887777643 112344444555555
Q ss_pred hhCCCC
Q 021175 301 DRVPLY 306 (316)
Q Consensus 301 ~~~~~~ 306 (316)
..+..|
T Consensus 223 dNl~lW 228 (236)
T PF00244_consen 223 DNLTLW 228 (236)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 544444
No 493
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=45.03 E-value=92 Score=30.63 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=33.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 021175 230 VSYVREGKLDKGISQFETAVKLQPGY-VTAWNNLGDAYEKKKDLKSALKAFEEVL 283 (316)
Q Consensus 230 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al 283 (316)
..+...+++++|...-++ .|.. +++|+..|..+....++++|.+.|.++=
T Consensus 781 qlHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred hheeecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 445677888888876554 4543 4567777777777777777776666553
No 494
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=44.91 E-value=3.5e+02 Score=27.50 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=78.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH---HcCCHH
Q 021175 163 RRELDLSAKELQEQVRSGDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYV---REGKLD 239 (316)
Q Consensus 163 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~---~~g~~~ 239 (316)
.+.-++-+..+++-+.+++.....+..|-.++...|++++-...-.+..+ ..|..+..|.....-.. ..++-.
T Consensus 92 ~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~----~~pl~~~lWl~Wl~d~~~mt~s~~~~ 167 (881)
T KOG0128|consen 92 EGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSE----IAPLPPHLWLEWLKDELSMTQSEERK 167 (881)
T ss_pred cccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHH----hcCCChHHHHHHHHHHHhhccCcchh
Confidence 33445566777777888888888888888888899998887777777777 46666666655443322 236777
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHH-------HHHcCCHHHHHHHHHHHHhc
Q 021175 240 KGISQFETAVKLQPGYVTAWNNLGDA-------YEKKKDLKSALKAFEEVLLF 285 (316)
Q Consensus 240 ~A~~~~~~al~~~p~~~~~~~~lg~~-------~~~~g~~~~A~~~~~~al~~ 285 (316)
++...|++++. +-++...|...+.. +...++++.-...+.++++.
T Consensus 168 ~v~~~~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 168 EVEELFEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHHHHHHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 88888888886 33444444333333 34446666677777777653
No 495
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.42 E-value=59 Score=21.02 Aligned_cols=29 Identities=14% Similarity=0.136 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 021175 184 ATEYFELGAVMLRRKFYPAATKYLLQAIE 212 (316)
Q Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 212 (316)
..-+...-..+...|++++|.++.++..+
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344555556667777777777666655
No 496
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.39 E-value=68 Score=26.13 Aligned_cols=43 Identities=14% Similarity=0.083 Sum_probs=25.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCH
Q 021175 191 GAVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVREGKL 238 (316)
Q Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~p~~~~~~~~lg~~~~~~g~~ 238 (316)
..++++.|++++|.+.+++... +|++......|..+-..++.+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-----d~~~~~~r~kL~~II~~Kd~~ 160 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-----DPESQKLRMKLLMIIREKDPA 160 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-----CCCchhHHHHHHHHHHccccc
Confidence 3456677777777777777766 555555454455444444333
No 497
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=43.96 E-value=65 Score=24.23 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 021175 260 NNLGDAYEKKKDLKSALKAFEEVLLFDPNNKVARP 294 (316)
Q Consensus 260 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 294 (316)
..+|+.+...|++++|..+|-+|+...|+-.+...
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~ 101 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQ 101 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 45899999999999999999999999887554433
No 498
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=43.60 E-value=2.2e+02 Score=27.56 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CCccHHHHHHH
Q 021175 166 LDLSAKELQEQVRS-----GDASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG--DDQDLAQVYNA 227 (316)
Q Consensus 166 ~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~p~~~~~~~~ 227 (316)
-..+++.|.+++.. +..+..-|..+|-.+++.++|.+|+..+-+|-+.... ...++.++|-.
T Consensus 295 r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKE 363 (618)
T PF05053_consen 295 RPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKE 363 (618)
T ss_dssp S--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHH
Confidence 34566777777762 3445677889999999999999999999988775443 23455555544
No 499
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.56 E-value=65 Score=26.25 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=33.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 021175 228 LGVSYVREGKLDKGISQFETAVKLQPGYVTAWNNLGDAYEKKKDL 272 (316)
Q Consensus 228 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 272 (316)
.-.++.+.|.+++|.+.+++... +|+.......|..+-.+.+.+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~ 160 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPA 160 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccc
Confidence 34578899999999999999998 888777666666665555443
No 500
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=43.54 E-value=2.2e+02 Score=25.68 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=59.4
Q ss_pred HhhhHHHHHHHHHHHHHc-----CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---CCccHHHHHHHHHHHH
Q 021175 162 VRRELDLSAKELQEQVRS-----GD-ASATEYFELGAVMLRRKFYPAATKYLLQAIEKWDG---DDQDLAQVYNALGVSY 232 (316)
Q Consensus 162 ~~~~~~~A~~~~~~al~~-----~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~p~~~~~~~~lg~~~ 232 (316)
+.++.++|++.+++..+. .| .........|.++...||.+++.+.+...-...++ ..|.-...+|.++.-|
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqY 166 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQY 166 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHH
Confidence 455788999999887763 22 12345667888999999999999988877765433 4554556667777655
Q ss_pred H-HcCCHHHHHHHHHHHH
Q 021175 233 V-REGKLDKGISQFETAV 249 (316)
Q Consensus 233 ~-~~g~~~~A~~~~~~al 249 (316)
+ ..|++.......-+-+
T Consensus 167 yk~~~d~a~yYr~~L~YL 184 (380)
T KOG2908|consen 167 YKKIGDFASYYRHALLYL 184 (380)
T ss_pred HHHHHhHHHHHHHHHHHh
Confidence 5 5688876555444333
Done!