BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021176
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 410 bits (1055), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/277 (70%), Positives = 234/277 (84%), Gaps = 2/277 (0%)
Query: 40 IPKKLLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVAVT 99
I KLL FAK E+ WM+ IRRKIH+NPELGY+E ETS+LIRSEL+ +GIKY++PVA+T
Sbjct: 13 IQTKLLEFAKSPEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRYPVAIT 72
Query: 100 GVVGFIGTGEPPFVALRADMDSLPLQEMVEWEYKSKIPGKMHACGHDGHVTMLLGAAKIL 159
GV+G+IGTGEPPFVALRADMD+LP+QE VEWE+KSKI GKMHACGHDGHVTMLLGAAKIL
Sbjct: 73 GVIGYIGTGEPPFVALRADMDALPIQEGVEWEHKSKIAGKMHACGHDGHVTMLLGAAKIL 132
Query: 160 QEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEKVNAIFGLHVDPNLPIGEVASRPGP 219
EHR L+GTVVL+FQPAEEG GA K+ E G L+ V AIFG+H+ +P G+ ASR G
Sbjct: 133 HEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIHLSARIPFGKAASRAGS 192
Query: 220 LLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKF 279
LAG+G FEAVI GKGGHAAIPQH+IDP++AAS++++SLQ LVSRE DPLDS+VVTV+K
Sbjct: 193 FLAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKVVTVSKV 252
Query: 280 QGGGAFNVIPDSVLIGGTFRAFSKESFTQLKQRIEEV 316
GG AFNVIPDS+ IGGT RAF+ FTQL+QR++EV
Sbjct: 253 NGGNAFNVIPDSITIGGTLRAFT--GFTQLQQRVKEV 287
>pdb|1YSJ|A Chain A, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
pdb|1YSJ|B Chain B, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
Length = 404
Score = 236 bits (601), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 122/251 (48%), Positives = 162/251 (64%), Gaps = 2/251 (0%)
Query: 57 MIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKH-PVAVTGVVGFI-GTGEPPFVA 114
+I RR +H++PEL +QE ET++ IR L++ I+ P TGV+ I G + P +A
Sbjct: 34 LINXRRDLHEHPELSFQEVETTKKIRRWLEEEQIEILDVPQLKTGVIAEIKGREDGPVIA 93
Query: 115 LRADMDSLPLQEMVEWEYKSKIPGKMHACGHDGHVTMLLGAAKILQEHREELKGTVVLVF 174
+RAD+D+LP+QE + SK+ G HACGHD H ++G A +L + R ELKGTV +F
Sbjct: 94 IRADIDALPIQEQTNLPFASKVDGTXHACGHDFHTASIIGTAXLLNQRRAELKGTVRFIF 153
Query: 175 QPAEEGGGGAHKVLEAGVLEKVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGK 234
QPAEE GA KVLEAGVL V+AIFG H P+LP+G + + GPL A FE VI GK
Sbjct: 154 QPAEEIAAGARKVLEAGVLNGVSAIFGXHNKPDLPVGTIGVKEGPLXASVDRFEIVIKGK 213
Query: 235 GGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDSVLI 294
GGHA+IP +SIDPI AA +I LQ +VSR L + VV++ + Q G ++NVIPD
Sbjct: 214 GGHASIPNNSIDPIAAAGQIISGLQSVVSRNISSLQNAVVSITRVQAGTSWNVIPDQAEX 273
Query: 295 GGTFRAFSKES 305
GT R F KE+
Sbjct: 274 EGTVRTFQKEA 284
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 184 bits (466), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 158/277 (57%), Gaps = 4/277 (1%)
Query: 42 KKLLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVAVTGV 101
++L+ K +E G MI IRR +HQ+PEL + E ET++ I ++ + V G+
Sbjct: 3 QQLIETLKSKE--GKMIEIRRYLHQHPELSFHEDETAKYIAEFYKGKDVEVETNVGPRGI 60
Query: 102 VGFIGTGEP-PFVALRADMDSLPLQEMVEWEYKSKIPGKMHACGHDGHVTMLLGAAKILQ 160
I +G+P +A+RAD D+LP+ E + S+ G MHACGHD H +L A+ L
Sbjct: 61 KVTIDSGKPGKTLAIRADFDALPITEDTGLSFASQNKGVMHACGHDAHTAYMLVLAETLA 120
Query: 161 EHREELKGTVVLVFQPAEE-GGGGAHKVLEAGVLEKVNAIFGLHVDPNLPIGEVASRPGP 219
E ++ G VV++ QPAEE GGA ++E GVL+ V+ + G+HV + G+V RPG
Sbjct: 121 EMKDSFTGKVVVIHQPAEEVPPGGAKTMIENGVLDGVDHVLGVHVMSTMKTGKVYYRPGY 180
Query: 220 LLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKF 279
+ G FF+ + GKGGH + P + D I+A S + +LQ +VSR P ++ VVT+ F
Sbjct: 181 VQTGRAFFKLKVQGKGGHGSSPHMANDAIVAGSYFVTALQTVVSRRLSPFETGVVTIGSF 240
Query: 280 QGGGAFNVIPDSVLIGGTFRAFSKESFTQLKQRIEEV 316
G G FNVI D V I G R + + +++ I+ +
Sbjct: 241 DGKGQFNVIKDVVEIEGDVRGLTDATKATIEKEIKRL 277
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 100/205 (48%), Gaps = 13/205 (6%)
Query: 99 TGVVGFIGTGEP-PFVALRADMDSLPLQEMVEWEYK-------SKIPGKMHACGHDGHVT 150
GVV + TG P P +A R D D+L L E + ++ S G HACGHDGH
Sbjct: 97 AGVVATLDTGRPGPTLAFRVDXDALDLNEQHDDSHRPHRDHFASCNAGXXHACGHDGHTA 156
Query: 151 MLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEKVNAIFGLHVDPNLPI 210
+ LG A +L+++ +L G + L+FQPAEEG GA + AGV++ V+ +H+ +P
Sbjct: 157 IGLGLAHVLKQYAAQLNGVIKLIFQPAEEGTRGARAXVAAGVVDDVDYFTAIHIGTGVPA 216
Query: 211 GEVASRPGPLLAGSGFFEAVIGGKGGHA-AIPQHSIDPILAASNVIVSLQHLVSREADPL 269
G V G + F+ G HA P+ + +LAA+ + L + A
Sbjct: 217 GTVVC-GGDNFXATTKFDVQFSGVAAHAGGKPEDGRNALLAAAQAALGLHAIPPHSA--- 272
Query: 270 DSQVVTVAKFQGGGAFNVIPDSVLI 294
+ V V Q G NV+P S L+
Sbjct: 273 GASRVNVGVXQAGTGRNVVPSSALL 297
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 54/290 (18%)
Query: 49 KRQELVGWM-------IGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVA--VT 99
++Q+++ ++ I I +IH+ PELG +E S+ + L + + + +A T
Sbjct: 3 EKQQILDYIETNKYSYIEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHAT 62
Query: 100 GVVGFIGTG-EPPFVALRADMDSLPLQEMVEWEYKSKIPGKMHACGHDGHVTMLLGAAKI 158
G + +G + P + A+ D+LP G HACGH+ ++G A +
Sbjct: 63 GFIATYDSGLDGPAIGFLAEYDALP--------------GLGHACGHN-----IIGTASV 103
Query: 159 -----LQEHREELKGTVVLVFQPAEEGG-GGAHKV--LEAGVLEKVNAIFGLHVDPNLPI 210
L++ +++ G VV++ PAEEGG G+ K ++AGV+++++ +H P
Sbjct: 104 LGAIGLKQVIDQIGGKVVVLGCPAEEGGENGSAKASYVKAGVIDQIDIALXIH-----PG 158
Query: 211 GEVASRPGPLLAGSGFFEAVIGGKGGHAAIPQ----HSIDPILAASNVIVSLQHLVSREA 266
E L + GK HA+ +++D ++ N + L+ + ++
Sbjct: 159 NETYKTIDTLAV--DVLDVKFYGKSAHASENADEALNALDAXISYFNGVAQLRQHIKKD- 215
Query: 267 DPLDSQVVTVAKFQGGGAFNVIPDSVLIGGTFRAFSKESFTQLKQRIEEV 316
Q V GG A N+IPD RA +++ L +++ ++
Sbjct: 216 -----QRVHGVILDGGKAANIIPDYTHARFYTRAXTRKELDILTEKVNQI 260
>pdb|3RZA|A Chain A, Crystal Structure Of A Tripeptidase (Sav1512) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 2.10 A
Resolution
pdb|3RZA|B Chain B, Crystal Structure Of A Tripeptidase (Sav1512) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 2.10 A
Resolution
Length = 396
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 34/184 (18%)
Query: 146 DGHV----TMLLGAA---------KILQEHREEL--KGTVVLVFQPAEEGGGGAHKVLEA 190
DG++ T +LGA ++LQ +E+ G + V EE G K L +
Sbjct: 115 DGYIYSDGTTILGADDKAGLAAXLEVLQVIKEQQIPHGQIQFVITVGEESGLIGAKELNS 174
Query: 191 GVLEKVNAIFGLHVDPNLPIGE-VASRPGPLLAGSGFFEAVIGGKGGHAAIPQHSIDPIL 249
+L+ A FG +D + +G V P L A I GK HA+ P+ + I
Sbjct: 175 ELLD---ADFGYAIDASADVGTTVVGAPTQXL-----ISAKIIGKTAHASTPKEGVSAIN 226
Query: 250 AASNVIVSLQHLVSREADPLDSQVVT--VAKFQGGGAFNVIPDSVLIGGTFRAFSKESF- 306
A+ I SR ++ T + KF GG A N++ D V++ R+ E
Sbjct: 227 IAAKAI-------SRXKLGQVDEITTANIGKFHGGSATNIVADEVILEAEARSHDPERIK 279
Query: 307 TQLK 310
TQ+K
Sbjct: 280 TQVK 283
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 230 VIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREAD----PLDSQVVTVAKFQGGGAF 285
+ GK GH A P +I+P+ + ++ L V E + P Q+ + G GA
Sbjct: 190 TVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNING--GTGAT 247
Query: 286 NVIPDSVLIGGTFRAFSKESFTQLKQRIEEV 316
NVIP + + FR ++ + LKQR+ +
Sbjct: 248 NVIPGELNVKFNFRFSTESTEAGLKQRVHAI 278
>pdb|3IC1|A Chain A, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3IC1|B Chain B, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3ISZ|A Chain A, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
pdb|3ISZ|B Chain B, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
Length = 377
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 115/280 (41%), Gaps = 29/280 (10%)
Query: 57 MIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYK-HPVAVT-GVVGFIGTGEPPFVA 114
++ + + + + P + + Q+I L+K+G + + P T + GT EP +A
Sbjct: 5 VVSLAQDLIRRPSISPNDEGCQQIIAERLEKLGFQIEWMPFNDTLNLWAKHGTSEP-VIA 63
Query: 115 LRADMDSLPLQEMVEWE---YKSKIPGKM----HACGHDGHVTMLLGAAKILQEHREELK 167
D +P + +W + ++I M A G + ++ AA+ + K
Sbjct: 64 FAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHK 123
Query: 168 GTVVLVFQPAEEGGG--GAHKVLEAGVLEKVNAIFGLHVDPNLP--IGEVASRPGPLLAG 223
GT+ L+ EE G V+E + + + +P+ +G+V G
Sbjct: 124 GTIALLITSDEEATAKDGTIHVVETLMARDEKITYCMVGEPSSAKNLGDVVKNG---RRG 180
Query: 224 SGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREAD-------PLDSQVVTV 276
S I G GH A P + +PI A+ + LQ L + + D P Q+ +
Sbjct: 181 SITGNLYIQGIQGHVAYPHLAENPIHKAA---LFLQELTTYQWDKGNEFFPPTSLQIANI 237
Query: 277 AKFQGGGAFNVIPDSVLIGGTFRAFSKESFTQLKQRIEEV 316
G G+ NVIP + I R ++ + +KQ++ E+
Sbjct: 238 --HAGTGSNNVIPAELYIQFNLRYCTEVTDEIIKQKVAEM 275
>pdb|1CG2|A Chain A, Carboxypeptidase G2
pdb|1CG2|B Chain B, Carboxypeptidase G2
pdb|1CG2|C Chain C, Carboxypeptidase G2
pdb|1CG2|D Chain D, Carboxypeptidase G2
Length = 393
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 147 GHVTMLLGAAKILQEHREELKGTVVLVFQPAEEGGG-GAHKVLEAGVLEKVNAIFGLHVD 205
G ++L K+L+E+ GT+ ++F EE G G+ +++ E A + L +
Sbjct: 122 GGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSFGSRDLIQE---EAKLADYVLSFE 178
Query: 206 PNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHA-AIPQHSIDPILAASNVIVSLQHLVSR 264
P E S +G + + I GK HA A P+ ++ ++ AS++++ ++ +
Sbjct: 179 PTSAGDEKLSLG---TSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNIDDK 235
Query: 265 EADPLDSQVVTVAKFQGGGAFNVIPDSVLIGGTFRAFSKESFTQLKQRIEE 315
+ + T+AK G N+IP S + R E F + +EE
Sbjct: 236 AKNLRFNW--TIAK--AGNVSNIIPASATLNADVRYARNEDFDAAMKTLEE 282
>pdb|3GB0|A Chain A, Crystal Structure Of Aminopeptidase Pept (Np_980509.1)
From Bacillus Cereus Atcc 10987 At 2.04 A Resolution
Length = 373
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 13/138 (9%)
Query: 168 GTVVLVFQPAEEGGGGAHKVLEAGVLEKVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFF 227
GT+ + EE G K L+ E++ A +G +D + +GE+ P A
Sbjct: 131 GTIEFIITVGEESGLVGAKALD---RERITAKYGYALDSDGKVGEIVV-AAPTQAK---V 183
Query: 228 EAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVV-TVAKFQGGGAFN 286
A+I GK HA + P S + ++ + + +DS+ + +F+GG N
Sbjct: 184 NAIIRGKTAHAGVA-----PEKGVSAITIAAKAIAKXPLGRIDSETTANIGRFEGGTQTN 238
Query: 287 VIPDSVLIGGTFRAFSKE 304
++ D V I R+ E
Sbjct: 239 IVCDHVQIFAEARSLINE 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,596,264
Number of Sequences: 62578
Number of extensions: 404914
Number of successful extensions: 890
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 876
Number of HSP's gapped (non-prelim): 10
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)