Query 021177
Match_columns 316
No_of_seqs 306 out of 2947
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:11:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 2.7E-30 5.9E-35 231.4 21.0 163 4-188 105-274 (346)
2 KOG0105 Alternative splicing f 100.0 6.9E-29 1.5E-33 193.6 21.1 184 1-190 1-193 (241)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.8E-28 1.3E-32 220.2 20.9 163 4-188 1-170 (352)
4 TIGR01645 half-pint poly-U bin 100.0 1.1E-27 2.4E-32 225.5 22.2 172 4-188 105-283 (612)
5 TIGR01622 SF-CC1 splicing fact 100.0 8.4E-27 1.8E-31 219.7 22.4 172 3-187 86-264 (457)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 6.7E-26 1.5E-30 206.6 24.1 181 5-189 88-349 (352)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.9E-26 1.1E-30 214.7 22.9 171 5-188 1-173 (481)
8 KOG0148 Apoptosis-promoting RN 99.9 9.6E-27 2.1E-31 191.9 14.3 167 7-179 63-232 (321)
9 TIGR01628 PABP-1234 polyadenyl 99.9 1E-25 2.2E-30 217.3 20.4 157 8-186 2-164 (562)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.8E-25 8.2E-30 208.7 23.1 182 4-187 273-478 (481)
11 TIGR01648 hnRNP-R-Q heterogene 99.9 9.2E-25 2E-29 205.5 23.2 176 6-189 58-307 (578)
12 KOG0109 RNA-binding protein LA 99.9 3.1E-26 6.7E-31 190.7 11.1 143 7-180 3-145 (346)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.7E-24 3.8E-29 206.7 22.6 177 3-187 172-373 (509)
14 KOG0145 RNA-binding protein EL 99.9 2.1E-25 4.6E-30 183.0 13.9 164 4-189 39-209 (360)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.2E-24 7E-29 204.8 22.5 179 4-186 293-499 (509)
16 TIGR01628 PABP-1234 polyadenyl 99.9 3.4E-24 7.3E-29 206.8 18.8 178 5-188 177-363 (562)
17 KOG0144 RNA-binding protein CU 99.9 1.8E-24 3.9E-29 189.0 13.3 167 5-192 33-209 (510)
18 KOG0117 Heterogeneous nuclear 99.9 8.3E-24 1.8E-28 185.6 17.4 175 6-188 83-330 (506)
19 KOG0131 Splicing factor 3b, su 99.9 2.9E-24 6.4E-29 167.6 12.9 162 4-188 7-176 (203)
20 TIGR01622 SF-CC1 splicing fact 99.9 3.9E-23 8.5E-28 194.8 22.8 177 6-186 186-445 (457)
21 KOG0127 Nucleolar protein fibr 99.9 1.8E-22 3.9E-27 181.2 16.1 180 7-190 6-197 (678)
22 KOG0106 Alternative splicing f 99.9 2.2E-22 4.7E-27 165.0 11.3 164 7-183 2-165 (216)
23 KOG0145 RNA-binding protein EL 99.9 3.1E-21 6.7E-26 158.6 15.8 177 6-186 127-355 (360)
24 KOG0127 Nucleolar protein fibr 99.9 5.5E-21 1.2E-25 171.7 18.6 171 5-175 116-368 (678)
25 KOG0124 Polypyrimidine tract-b 99.9 9E-22 2E-26 168.8 10.8 166 7-185 114-286 (544)
26 KOG0107 Alternative splicing f 99.9 2.5E-20 5.5E-25 144.8 14.5 79 4-84 8-86 (195)
27 KOG0123 Polyadenylate-binding 99.8 4.1E-20 9E-25 166.7 16.9 149 7-188 2-152 (369)
28 KOG0110 RNA-binding protein (R 99.8 8.4E-20 1.8E-24 169.0 13.6 164 8-186 517-690 (725)
29 KOG0107 Alternative splicing f 99.8 1.1E-18 2.4E-23 135.7 16.2 78 108-190 9-86 (195)
30 KOG4207 Predicted splicing fac 99.8 4.7E-19 1E-23 141.1 14.0 81 4-84 11-94 (256)
31 KOG4206 Spliceosomal protein s 99.8 1.4E-18 3.1E-23 141.1 16.9 172 1-173 4-209 (221)
32 TIGR01645 half-pint poly-U bin 99.8 7.7E-18 1.7E-22 159.2 23.0 78 5-82 203-283 (612)
33 KOG0123 Polyadenylate-binding 99.8 2E-18 4.3E-23 155.8 14.6 168 4-188 74-245 (369)
34 KOG4676 Splicing factor, argin 99.8 1.4E-19 3.1E-24 156.5 6.7 168 3-172 4-213 (479)
35 KOG0148 Apoptosis-promoting RN 99.8 1.9E-18 4.1E-23 143.1 11.1 139 1-190 1-143 (321)
36 PLN03134 glycine-rich RNA-bind 99.8 5.6E-18 1.2E-22 133.6 13.3 82 4-85 32-116 (144)
37 KOG0147 Transcriptional coacti 99.8 4.1E-18 8.9E-23 153.9 13.2 174 5-179 277-522 (549)
38 KOG1457 RNA binding protein (c 99.8 3.8E-17 8.2E-22 131.8 14.9 170 5-174 33-275 (284)
39 KOG4205 RNA-binding protein mu 99.8 9.8E-18 2.1E-22 146.3 12.2 159 1-175 1-166 (311)
40 KOG0147 Transcriptional coacti 99.7 1.4E-18 3.1E-23 156.9 5.9 169 3-178 176-351 (549)
41 KOG0144 RNA-binding protein CU 99.7 2.8E-17 6.1E-22 144.2 12.8 80 5-84 123-207 (510)
42 KOG0113 U1 small nuclear ribon 99.7 7.4E-17 1.6E-21 135.5 14.7 86 3-88 98-186 (335)
43 KOG4207 Predicted splicing fac 99.7 8.9E-17 1.9E-21 128.2 13.3 81 103-187 7-91 (256)
44 KOG1548 Transcription elongati 99.7 7.4E-16 1.6E-20 132.0 18.5 182 4-189 132-352 (382)
45 KOG0121 Nuclear cap-binding pr 99.7 3.7E-17 7.9E-22 120.6 7.0 80 4-83 34-116 (153)
46 KOG0146 RNA-binding protein ET 99.7 9.7E-16 2.1E-20 126.9 13.6 171 5-175 18-355 (371)
47 PF00076 RRM_1: RNA recognitio 99.7 1.5E-16 3.1E-21 110.0 6.9 68 9-76 1-70 (70)
48 PLN03120 nucleic acid binding 99.7 6.6E-16 1.4E-20 130.2 11.2 79 5-84 3-81 (260)
49 KOG4211 Splicing factor hnRNP- 99.7 3.6E-15 7.7E-20 133.4 16.1 166 5-186 9-179 (510)
50 TIGR01648 hnRNP-R-Q heterogene 99.7 7.8E-16 1.7E-20 145.4 12.2 128 5-137 232-369 (578)
51 KOG1190 Polypyrimidine tract-b 99.6 8.6E-15 1.9E-19 127.9 17.0 177 6-187 297-489 (492)
52 KOG0110 RNA-binding protein (R 99.6 3E-15 6.4E-20 139.1 14.2 170 4-176 383-589 (725)
53 KOG4212 RNA-binding protein hn 99.6 4.6E-14 1E-18 124.3 16.9 170 5-174 43-283 (608)
54 PLN03121 nucleic acid binding 99.6 5.8E-15 1.3E-19 122.5 10.6 78 5-83 4-81 (243)
55 KOG0114 Predicted RNA-binding 99.6 7.3E-15 1.6E-19 104.5 9.0 81 4-84 16-96 (124)
56 KOG0122 Translation initiation 99.6 5E-15 1.1E-19 121.3 9.3 80 4-83 187-269 (270)
57 COG0724 RNA-binding proteins ( 99.6 4.3E-14 9.3E-19 123.8 15.1 141 6-146 115-262 (306)
58 PF14259 RRM_6: RNA recognitio 99.6 5.8E-15 1.3E-19 102.1 7.4 68 9-76 1-70 (70)
59 KOG0120 Splicing factor U2AF, 99.6 3E-14 6.5E-19 130.6 12.2 172 4-175 287-482 (500)
60 TIGR01659 sex-lethal sex-letha 99.5 2.8E-14 6.1E-19 128.3 10.9 80 5-84 192-276 (346)
61 KOG0126 Predicted RNA-binding 99.5 1E-15 2.2E-20 119.9 0.9 81 4-84 33-116 (219)
62 KOG1190 Polypyrimidine tract-b 99.5 3.7E-14 8E-19 124.0 10.2 180 3-187 25-226 (492)
63 smart00362 RRM_2 RNA recogniti 99.5 6.9E-14 1.5E-18 96.4 9.1 71 8-78 1-72 (72)
64 KOG0125 Ataxin 2-binding prote 99.5 5E-14 1.1E-18 120.0 8.8 81 3-83 93-174 (376)
65 KOG0124 Polypyrimidine tract-b 99.5 1E-12 2.2E-17 113.5 16.8 75 7-81 211-288 (544)
66 KOG0149 Predicted RNA-binding 99.5 8.9E-14 1.9E-18 113.6 9.8 76 6-82 12-90 (247)
67 PLN03134 glycine-rich RNA-bind 99.5 7.9E-13 1.7E-17 104.3 14.6 80 106-189 31-114 (144)
68 KOG0130 RNA-binding protein RB 99.5 4.6E-14 1E-18 105.2 6.8 78 8-85 74-154 (170)
69 PLN03213 repressor of silencin 99.5 1.2E-13 2.6E-18 123.6 9.7 77 4-82 8-87 (759)
70 KOG0113 U1 small nuclear ribon 99.5 3.7E-12 8E-17 107.5 15.8 77 107-187 99-179 (335)
71 KOG0111 Cyclophilin-type pepti 99.5 7.8E-14 1.7E-18 112.5 5.5 84 4-87 8-94 (298)
72 smart00360 RRM RNA recognition 99.4 5.7E-13 1.2E-17 91.4 8.3 68 11-78 1-71 (71)
73 cd00590 RRM RRM (RNA recogniti 99.4 9.8E-13 2.1E-17 91.1 9.3 72 8-79 1-74 (74)
74 PF13893 RRM_5: RNA recognitio 99.4 9.2E-13 2E-17 86.8 7.8 56 23-80 1-56 (56)
75 KOG0108 mRNA cleavage and poly 99.4 9.6E-13 2.1E-17 120.1 9.3 78 7-84 19-99 (435)
76 KOG0415 Predicted peptidyl pro 99.4 1.7E-13 3.6E-18 117.9 3.5 80 4-83 237-319 (479)
77 KOG0105 Alternative splicing f 99.4 3.1E-12 6.7E-17 100.7 9.9 79 108-190 5-84 (241)
78 PF00076 RRM_1: RNA recognitio 99.4 4.9E-12 1.1E-16 87.1 9.9 64 112-175 1-67 (70)
79 KOG0117 Heterogeneous nuclear 99.3 2.2E-12 4.7E-17 114.3 7.6 77 6-87 259-335 (506)
80 KOG1456 Heterogeneous nuclear 99.3 1.1E-10 2.3E-15 101.5 17.3 179 4-184 285-484 (494)
81 KOG0109 RNA-binding protein LA 99.3 3.9E-12 8.6E-17 106.9 6.5 77 4-85 76-152 (346)
82 KOG0129 Predicted RNA-binding 99.3 8.9E-11 1.9E-15 106.3 14.5 167 5-174 258-444 (520)
83 smart00361 RRM_1 RNA recogniti 99.3 2.8E-11 6E-16 83.5 7.6 58 20-77 2-69 (70)
84 KOG4212 RNA-binding protein hn 99.2 4.7E-10 1E-14 99.4 16.4 74 6-79 215-290 (608)
85 KOG0125 Ataxin 2-binding prote 99.2 3.6E-11 7.8E-16 102.8 9.0 79 106-188 93-173 (376)
86 PLN03120 nucleic acid binding 99.2 7.6E-11 1.7E-15 99.8 10.6 75 109-188 4-79 (260)
87 KOG0130 RNA-binding protein RB 99.2 4.7E-11 1E-15 89.3 8.3 76 107-186 70-149 (170)
88 KOG1456 Heterogeneous nuclear 99.2 3.4E-10 7.3E-15 98.4 14.1 168 4-190 29-200 (494)
89 KOG4454 RNA binding protein (R 99.2 1.6E-11 3.4E-16 99.3 4.6 141 4-174 7-152 (267)
90 PF14259 RRM_6: RNA recognitio 99.2 2.4E-10 5.2E-15 78.8 9.6 64 112-175 1-67 (70)
91 KOG0122 Translation initiation 99.2 2.5E-10 5.4E-15 94.0 11.1 80 105-188 185-268 (270)
92 KOG0132 RNA polymerase II C-te 99.2 9.2E-11 2E-15 110.5 9.2 78 6-86 421-498 (894)
93 KOG1365 RNA-binding protein Fu 99.1 1.4E-10 3E-15 101.1 8.6 176 7-187 162-360 (508)
94 KOG0121 Nuclear cap-binding pr 99.1 1.5E-10 3.3E-15 85.9 7.2 78 107-188 34-115 (153)
95 KOG0114 Predicted RNA-binding 99.1 4.6E-10 1E-14 80.2 9.1 79 106-188 15-94 (124)
96 PLN03121 nucleic acid binding 99.1 4.7E-10 1E-14 93.5 10.5 76 108-188 4-80 (243)
97 KOG0112 Large RNA-binding prot 99.1 5.3E-11 1.2E-15 113.7 4.7 158 4-187 370-529 (975)
98 PLN03213 repressor of silencin 99.1 4.2E-10 9.1E-15 101.1 9.7 77 108-188 9-87 (759)
99 smart00362 RRM_2 RNA recogniti 99.1 1.3E-09 2.8E-14 74.6 9.6 65 111-175 1-67 (72)
100 KOG0120 Splicing factor U2AF, 99.1 7.7E-10 1.7E-14 101.9 9.6 169 3-175 172-359 (500)
101 KOG4208 Nucleolar RNA-binding 99.0 6.5E-10 1.4E-14 89.5 7.7 79 5-83 48-130 (214)
102 KOG0131 Splicing factor 3b, su 99.0 6.2E-10 1.3E-14 87.8 6.4 80 6-85 96-179 (203)
103 KOG0415 Predicted peptidyl pro 99.0 8.2E-10 1.8E-14 95.4 7.2 78 106-187 236-317 (479)
104 KOG0146 RNA-binding protein ET 99.0 4.9E-10 1.1E-14 93.3 5.5 81 4-84 283-366 (371)
105 KOG0153 Predicted RNA-binding 99.0 1.3E-09 2.7E-14 94.2 7.7 76 4-82 226-302 (377)
106 smart00360 RRM RNA recognition 99.0 4.9E-09 1.1E-13 71.4 8.5 62 114-175 1-66 (71)
107 KOG0149 Predicted RNA-binding 99.0 1.7E-09 3.8E-14 88.8 7.0 72 109-181 12-87 (247)
108 cd00590 RRM RRM (RNA recogniti 98.9 1.3E-08 2.8E-13 70.0 10.2 65 111-175 1-68 (74)
109 KOG4661 Hsp27-ERE-TATA-binding 98.9 4.5E-09 9.7E-14 96.1 8.4 81 5-85 404-487 (940)
110 PF13893 RRM_5: RNA recognitio 98.9 1.5E-08 3.3E-13 66.4 8.3 55 126-185 1-55 (56)
111 KOG0533 RRM motif-containing p 98.8 2.2E-08 4.8E-13 84.6 8.4 79 6-84 83-163 (243)
112 KOG0126 Predicted RNA-binding 98.8 1E-09 2.3E-14 86.4 0.3 75 109-187 35-113 (219)
113 KOG4660 Protein Mei2, essentia 98.8 4.2E-09 9.1E-14 96.4 4.0 165 4-174 73-239 (549)
114 KOG0111 Cyclophilin-type pepti 98.8 6.8E-09 1.5E-13 84.2 4.6 83 108-194 9-95 (298)
115 KOG4209 Splicing factor RNPS1, 98.8 1.5E-08 3.2E-13 85.8 6.8 80 4-84 99-181 (231)
116 KOG2193 IGF-II mRNA-binding pr 98.8 8.4E-10 1.8E-14 97.4 -0.9 142 7-175 2-147 (584)
117 KOG4211 Splicing factor hnRNP- 98.7 2.9E-07 6.3E-12 83.3 13.8 167 5-174 102-347 (510)
118 COG0724 RNA-binding proteins ( 98.7 9.7E-08 2.1E-12 83.3 10.1 75 109-187 115-193 (306)
119 KOG0128 RNA-binding protein SA 98.7 1.8E-09 3.9E-14 103.0 -1.5 133 5-174 666-804 (881)
120 KOG0116 RasGAP SH3 binding pro 98.7 4.3E-08 9.3E-13 89.4 7.3 77 5-82 287-366 (419)
121 KOG0151 Predicted splicing reg 98.7 4E-08 8.6E-13 92.2 6.9 78 6-83 174-257 (877)
122 KOG4205 RNA-binding protein mu 98.7 4.4E-08 9.5E-13 86.1 6.7 83 5-88 96-181 (311)
123 KOG0108 mRNA cleavage and poly 98.6 6.6E-08 1.4E-12 88.7 7.4 79 110-192 19-101 (435)
124 smart00361 RRM_1 RNA recogniti 98.6 2E-07 4.4E-12 64.1 8.1 53 123-175 2-65 (70)
125 PF11608 Limkain-b1: Limkain b 98.6 2.1E-07 4.7E-12 64.2 7.4 71 7-84 3-78 (90)
126 PF04059 RRM_2: RNA recognitio 98.6 5.1E-07 1.1E-11 65.5 8.3 76 7-82 2-86 (97)
127 KOG4210 Nuclear localization s 98.6 1.3E-07 2.7E-12 82.9 6.2 170 5-190 87-265 (285)
128 KOG1365 RNA-binding protein Fu 98.5 2.8E-06 6.1E-11 74.7 12.2 157 4-166 58-225 (508)
129 KOG4676 Splicing factor, argin 98.4 3.1E-08 6.7E-13 86.9 -1.7 64 6-71 151-214 (479)
130 KOG0226 RNA-binding proteins [ 98.4 4.3E-07 9.4E-12 75.5 4.7 75 5-79 189-266 (290)
131 KOG1457 RNA binding protein (c 98.3 3.8E-07 8.2E-12 74.5 3.8 66 4-70 208-273 (284)
132 KOG2202 U2 snRNP splicing fact 98.3 1E-06 2.2E-11 73.7 5.3 63 21-83 83-148 (260)
133 KOG0106 Alternative splicing f 98.3 1.3E-06 2.8E-11 72.4 5.5 71 110-188 2-72 (216)
134 KOG4206 Spliceosomal protein s 98.3 4.5E-06 9.7E-11 68.7 8.2 76 109-188 9-89 (221)
135 KOG4661 Hsp27-ERE-TATA-binding 98.3 2.5E-06 5.4E-11 78.6 7.4 77 108-188 404-484 (940)
136 KOG0132 RNA polymerase II C-te 98.2 3.7E-06 7.9E-11 80.1 8.1 75 108-188 420-494 (894)
137 KOG4454 RNA binding protein (R 98.2 1E-06 2.2E-11 71.8 2.7 76 104-179 4-81 (267)
138 KOG4307 RNA binding protein RB 98.2 9.4E-06 2E-10 76.5 9.1 175 5-185 310-510 (944)
139 KOG0533 RRM motif-containing p 98.2 7E-06 1.5E-10 69.6 7.6 74 109-186 83-159 (243)
140 KOG0116 RasGAP SH3 binding pro 98.2 2.8E-05 6E-10 71.3 12.0 77 108-189 287-367 (419)
141 KOG0153 Predicted RNA-binding 98.2 9.9E-06 2.1E-10 70.5 8.5 76 107-188 226-302 (377)
142 KOG1995 Conserved Zn-finger pr 98.1 3.6E-06 7.8E-11 73.7 4.0 80 5-84 65-155 (351)
143 KOG4208 Nucleolar RNA-binding 98.0 2.5E-05 5.3E-10 63.4 7.3 73 107-179 47-124 (214)
144 PF08777 RRM_3: RNA binding mo 98.0 2.2E-05 4.7E-10 58.3 5.9 70 7-79 2-76 (105)
145 KOG0226 RNA-binding proteins [ 97.9 2.7E-05 5.9E-10 65.0 6.3 152 10-175 100-260 (290)
146 KOG4660 Protein Mei2, essentia 97.9 1.1E-05 2.4E-10 74.4 4.4 70 108-178 74-143 (549)
147 PF14605 Nup35_RRM_2: Nup53/35 97.9 3.8E-05 8.2E-10 49.4 5.4 53 6-62 1-53 (53)
148 KOG3152 TBP-binding protein, a 97.8 1E-05 2.2E-10 67.6 2.7 69 6-74 74-157 (278)
149 KOG1548 Transcription elongati 97.8 0.00016 3.6E-09 63.1 10.1 77 107-187 132-219 (382)
150 KOG4210 Nuclear localization s 97.8 1.3E-05 2.8E-10 70.3 3.5 81 3-84 181-265 (285)
151 KOG4849 mRNA cleavage factor I 97.8 2.4E-05 5.2E-10 68.1 3.7 74 6-79 80-158 (498)
152 COG5175 MOT2 Transcriptional r 97.8 8.3E-05 1.8E-09 64.6 7.0 75 7-81 115-201 (480)
153 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00018 3.8E-09 52.6 7.5 76 4-81 4-90 (100)
154 PF08777 RRM_3: RNA binding mo 97.7 8.9E-05 1.9E-09 55.0 5.9 59 110-170 2-60 (105)
155 PF04059 RRM_2: RNA recognitio 97.7 0.00051 1.1E-08 49.9 9.4 66 110-175 2-73 (97)
156 KOG0151 Predicted splicing reg 97.7 0.00018 3.8E-09 68.4 8.5 77 107-187 172-255 (877)
157 KOG2314 Translation initiation 97.6 0.00013 2.8E-09 67.5 6.9 75 6-80 58-141 (698)
158 KOG4307 RNA binding protein RB 97.6 0.00021 4.7E-09 67.6 7.4 76 4-79 864-943 (944)
159 KOG2202 U2 snRNP splicing fact 97.5 0.00015 3.3E-09 60.8 5.3 55 124-178 83-141 (260)
160 KOG2416 Acinus (induces apopto 97.5 9E-05 2E-09 68.9 3.9 77 4-83 442-522 (718)
161 KOG4209 Splicing factor RNPS1, 97.5 0.00037 8E-09 59.2 6.8 77 107-188 99-179 (231)
162 PF11608 Limkain-b1: Limkain b 97.4 0.001 2.2E-08 46.3 7.4 69 110-188 3-76 (90)
163 KOG0129 Predicted RNA-binding 97.4 0.00063 1.4E-08 62.6 8.2 61 3-63 367-431 (520)
164 KOG1855 Predicted RNA-binding 97.4 0.00014 3.1E-09 65.1 3.9 63 5-67 230-308 (484)
165 KOG0115 RNA-binding protein p5 97.3 0.00076 1.6E-08 56.7 6.3 102 57-185 6-110 (275)
166 PF08675 RNA_bind: RNA binding 97.2 0.002 4.2E-08 44.8 6.9 54 7-66 10-63 (87)
167 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.0013 2.9E-08 42.2 5.4 52 110-164 2-53 (53)
168 PF08952 DUF1866: Domain of un 97.1 0.002 4.4E-08 50.0 7.2 54 22-81 52-105 (146)
169 KOG0112 Large RNA-binding prot 97.0 0.00097 2.1E-08 65.2 5.5 82 3-87 452-535 (975)
170 KOG1996 mRNA splicing factor [ 97.0 0.0018 3.8E-08 55.5 6.4 62 20-81 300-365 (378)
171 KOG0128 RNA-binding protein SA 97.0 0.00068 1.5E-08 65.8 4.2 81 7-87 737-819 (881)
172 KOG2314 Translation initiation 96.6 0.0069 1.5E-07 56.5 7.2 66 109-174 58-132 (698)
173 KOG2253 U1 snRNP complex, subu 96.6 6.5E-05 1.4E-09 70.8 -5.9 72 5-82 39-110 (668)
174 PF07576 BRAP2: BRCA1-associat 96.6 0.02 4.2E-07 42.8 8.3 67 5-71 12-80 (110)
175 KOG1855 Predicted RNA-binding 96.4 0.0037 8.1E-08 56.3 4.3 64 107-170 229-309 (484)
176 COG5175 MOT2 Transcriptional r 96.4 0.011 2.3E-07 51.8 6.9 71 105-175 110-193 (480)
177 KOG1996 mRNA splicing factor [ 96.3 0.012 2.5E-07 50.6 6.5 53 123-175 300-357 (378)
178 PF05172 Nup35_RRM: Nup53/35/4 96.3 0.017 3.6E-07 42.3 6.5 65 109-175 6-81 (100)
179 KOG2416 Acinus (induces apopto 96.2 0.0052 1.1E-07 57.6 4.1 68 105-174 440-508 (718)
180 KOG1995 Conserved Zn-finger pr 96.2 0.0091 2E-07 52.8 5.3 70 106-175 63-144 (351)
181 KOG3152 TBP-binding protein, a 96.1 0.0043 9.2E-08 52.3 2.6 67 109-175 74-156 (278)
182 PF15023 DUF4523: Protein of u 95.9 0.029 6.3E-07 43.2 6.2 72 5-81 85-160 (166)
183 KOG0835 Cyclin L [General func 95.6 0.015 3.2E-07 51.0 4.0 19 45-63 173-191 (367)
184 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.012 2.5E-07 48.1 3.3 80 4-83 5-98 (176)
185 KOG0115 RNA-binding protein p5 95.5 0.015 3.2E-07 49.1 3.4 74 7-80 32-111 (275)
186 KOG2068 MOT2 transcription fac 95.4 0.0071 1.5E-07 53.1 1.4 74 8-81 79-161 (327)
187 PF10309 DUF2414: Protein of u 95.2 0.15 3.3E-06 33.6 6.8 53 7-65 6-62 (62)
188 PF03880 DbpA: DbpA RNA bindin 95.0 0.1 2.2E-06 36.0 6.1 58 17-80 12-74 (74)
189 KOG2135 Proteins containing th 94.7 0.02 4.3E-07 52.4 2.4 77 4-84 370-447 (526)
190 KOG4285 Mitotic phosphoprotein 94.6 0.077 1.7E-06 46.0 5.4 67 8-79 199-266 (350)
191 KOG2591 c-Mpl binding protein, 94.5 0.13 2.9E-06 48.2 7.1 70 109-181 175-248 (684)
192 KOG0804 Cytoplasmic Zn-finger 94.5 0.11 2.5E-06 47.4 6.5 68 5-72 73-142 (493)
193 KOG2591 c-Mpl binding protein, 94.2 0.071 1.5E-06 49.9 4.7 71 5-79 174-248 (684)
194 PF04847 Calcipressin: Calcipr 94.2 0.19 4.2E-06 41.2 6.8 62 19-83 8-71 (184)
195 KOG0835 Cyclin L [General func 94.1 0.087 1.9E-06 46.3 4.7 12 120-131 212-223 (367)
196 PF10309 DUF2414: Protein of u 94.0 0.47 1E-05 31.3 7.1 54 110-167 6-62 (62)
197 PF08952 DUF1866: Domain of un 94.0 0.39 8.4E-06 37.5 7.7 46 125-175 52-97 (146)
198 PF08675 RNA_bind: RNA binding 91.9 0.78 1.7E-05 32.1 5.9 54 111-169 11-64 (87)
199 PF11767 SET_assoc: Histone ly 91.4 1.1 2.3E-05 30.1 6.1 55 17-77 11-65 (66)
200 PF10567 Nab6_mRNP_bdg: RNA-re 91.0 6.5 0.00014 34.4 11.9 163 6-169 15-213 (309)
201 KOG4574 RNA-binding protein (c 90.7 0.17 3.8E-06 49.8 2.5 72 10-84 302-375 (1007)
202 PF03467 Smg4_UPF3: Smg-4/UPF3 90.1 0.87 1.9E-05 37.1 5.8 69 109-177 7-85 (176)
203 KOG2193 IGF-II mRNA-binding pr 90.0 0.014 3E-07 52.7 -5.1 77 6-82 80-156 (584)
204 KOG2318 Uncharacterized conser 88.8 2.5 5.3E-05 40.3 8.2 78 3-80 171-305 (650)
205 KOG2888 Putative RNA binding p 88.2 0.28 6E-06 43.1 1.7 8 125-132 228-235 (453)
206 PF07576 BRAP2: BRCA1-associat 87.9 6.4 0.00014 29.4 8.6 64 111-174 15-81 (110)
207 KOG4849 mRNA cleavage factor I 87.4 0.64 1.4E-05 41.2 3.5 67 109-175 80-152 (498)
208 KOG2135 Proteins containing th 87.2 1.3 2.9E-05 41.0 5.4 70 112-188 375-445 (526)
209 PF14111 DUF4283: Domain of un 87.1 0.97 2.1E-05 35.6 4.2 120 9-145 18-141 (153)
210 PF15023 DUF4523: Protein of u 86.6 2.8 6.1E-05 32.5 6.1 62 107-171 84-149 (166)
211 KOG4285 Mitotic phosphoprotein 85.0 3 6.5E-05 36.5 6.2 70 109-185 197-266 (350)
212 PF07292 NID: Nmi/IFP 35 domai 84.4 2.3 4.9E-05 30.3 4.4 72 48-131 1-74 (88)
213 KOG3580 Tight junction protein 82.1 5.7 0.00012 38.2 7.2 40 106-145 58-98 (1027)
214 KOG2068 MOT2 transcription fac 81.8 0.74 1.6E-05 40.8 1.3 67 109-175 77-153 (327)
215 KOG0804 Cytoplasmic Zn-finger 81.2 7.1 0.00015 36.2 7.3 66 109-174 74-142 (493)
216 KOG4246 Predicted DNA-binding 79.8 0.33 7.1E-06 47.8 -1.6 12 108-119 144-155 (1194)
217 PF04847 Calcipressin: Calcipr 79.5 9.7 0.00021 31.3 7.1 60 121-186 7-68 (184)
218 PF03880 DbpA: DbpA RNA bindin 77.8 17 0.00038 24.7 7.0 58 118-184 10-72 (74)
219 KOG4574 RNA-binding protein (c 77.0 1.3 2.9E-05 43.9 1.6 70 114-187 303-372 (1007)
220 KOG2253 U1 snRNP complex, subu 77.0 2.1 4.6E-05 41.3 2.8 66 105-175 36-101 (668)
221 KOG2891 Surface glycoprotein [ 76.4 1.2 2.6E-05 38.3 1.0 67 4-70 147-247 (445)
222 PRK14548 50S ribosomal protein 74.1 13 0.00028 26.2 5.6 57 8-64 22-80 (84)
223 TIGR03636 L23_arch archaeal ri 73.0 16 0.00034 25.3 5.7 56 8-63 15-72 (77)
224 KOG2146 Splicing coactivator S 69.3 24 0.00052 30.8 7.1 16 50-65 57-72 (354)
225 KOG4019 Calcineurin-mediated s 68.3 6.4 0.00014 31.9 3.3 76 6-84 10-91 (193)
226 PF15513 DUF4651: Domain of un 62.1 19 0.00041 23.7 4.0 19 21-39 9-27 (62)
227 COG5638 Uncharacterized conser 61.6 33 0.00071 31.5 6.8 77 3-79 143-294 (622)
228 PF11767 SET_assoc: Histone ly 61.5 40 0.00086 22.6 5.6 50 120-174 11-60 (66)
229 PF03468 XS: XS domain; Inter 61.0 6.4 0.00014 29.7 2.0 51 8-58 10-69 (116)
230 PF09707 Cas_Cas2CT1978: CRISP 60.3 20 0.00043 25.4 4.2 50 4-53 23-72 (86)
231 KOG4246 Predicted DNA-binding 59.1 1.6 3.5E-05 43.3 -1.9 13 45-57 59-71 (1194)
232 PF14893 PNMA: PNMA 58.8 7.6 0.00016 35.0 2.4 57 1-57 13-74 (331)
233 KOG4483 Uncharacterized conser 58.0 22 0.00047 32.6 5.0 55 6-64 391-446 (528)
234 KOG1295 Nonsense-mediated deca 56.0 13 0.00028 33.8 3.3 66 5-70 6-77 (376)
235 KOG4410 5-formyltetrahydrofola 54.8 56 0.0012 28.6 6.8 52 106-158 327-378 (396)
236 KOG4008 rRNA processing protei 53.5 8.4 0.00018 32.5 1.6 34 5-38 39-72 (261)
237 KOG4213 RNA-binding protein La 51.1 21 0.00045 28.9 3.4 46 18-63 118-168 (205)
238 KOG4410 5-formyltetrahydrofola 49.1 28 0.0006 30.4 4.1 48 7-56 331-378 (396)
239 PF02714 DUF221: Domain of unk 46.2 37 0.00081 30.4 4.9 32 48-81 1-32 (325)
240 PRK11558 putative ssRNA endonu 44.1 41 0.00088 24.4 3.7 51 5-55 26-76 (97)
241 cd04889 ACT_PDH-BS-like C-term 43.8 78 0.0017 19.6 5.5 43 20-62 12-55 (56)
242 PTZ00191 60S ribosomal protein 43.2 79 0.0017 24.8 5.5 55 8-62 83-139 (145)
243 KOG2318 Uncharacterized conser 42.0 2.1E+02 0.0045 27.9 8.9 69 107-175 172-296 (650)
244 PF03439 Spt5-NGN: Early trans 41.4 44 0.00095 23.4 3.6 35 32-68 33-67 (84)
245 PF07292 NID: Nmi/IFP 35 domai 40.0 16 0.00035 26.0 1.2 24 4-27 50-73 (88)
246 cd04908 ACT_Bt0572_1 N-termina 39.4 1.1E+02 0.0023 19.9 6.4 44 19-63 14-58 (66)
247 PF03468 XS: XS domain; Inter 37.7 67 0.0015 24.1 4.3 47 111-158 10-67 (116)
248 KOG2295 C2H2 Zn-finger protein 34.7 5.4 0.00012 37.9 -2.4 68 5-72 230-300 (648)
249 smart00596 PRE_C2HC PRE_C2HC d 34.3 1.1E+02 0.0023 20.7 4.3 58 21-81 2-63 (69)
250 PF07530 PRE_C2HC: Associated 33.7 1.4E+02 0.0029 20.1 4.8 59 21-82 2-64 (68)
251 PF11411 DNA_ligase_IV: DNA li 33.7 34 0.00074 19.8 1.6 17 16-32 19-35 (36)
252 TIGR01873 cas_CT1978 CRISPR-as 33.4 80 0.0017 22.4 3.8 50 5-54 24-74 (87)
253 PRK10629 EnvZ/OmpR regulon mod 33.3 2.2E+02 0.0048 21.8 7.7 71 5-80 34-108 (127)
254 PRK15464 cold shock-like prote 32.5 31 0.00067 23.4 1.6 19 31-54 7-25 (70)
255 PRK08559 nusG transcription an 31.4 1.8E+02 0.0039 22.9 6.1 33 33-67 36-68 (153)
256 KOG1295 Nonsense-mediated deca 31.4 66 0.0014 29.4 3.8 66 109-174 7-79 (376)
257 COG0150 PurM Phosphoribosylami 30.3 23 0.00049 31.9 0.8 50 18-68 273-322 (345)
258 PF09902 DUF2129: Uncharacteri 30.1 1.2E+02 0.0027 20.5 4.2 38 26-69 16-53 (71)
259 TIGR02381 cspD cold shock doma 29.5 41 0.00088 22.5 1.8 47 31-83 4-56 (68)
260 CHL00123 rps6 ribosomal protei 29.5 1.5E+02 0.0032 21.4 4.8 54 8-63 10-80 (97)
261 PRK09937 stationary phase/star 29.4 42 0.00091 23.0 1.8 18 31-53 4-21 (74)
262 PRK09507 cspE cold shock prote 29.3 39 0.00084 22.7 1.6 19 31-54 6-24 (69)
263 PRK14998 cold shock-like prote 29.2 43 0.00093 22.8 1.8 19 31-54 4-22 (73)
264 PRK10943 cold shock-like prote 29.1 39 0.00085 22.7 1.6 19 31-54 6-24 (69)
265 PRK15463 cold shock-like prote 28.9 39 0.00085 22.8 1.6 19 31-54 7-25 (70)
266 PHA03164 hypothetical protein; 27.5 17 0.00036 24.8 -0.4 28 285-312 57-84 (88)
267 KOG2187 tRNA uracil-5-methyltr 27.2 1.5E+02 0.0033 28.5 5.6 40 45-84 63-102 (534)
268 PF00313 CSD: 'Cold-shock' DNA 27.2 51 0.0011 21.6 1.9 20 31-55 3-22 (66)
269 PF11823 DUF3343: Protein of u 27.1 75 0.0016 21.4 2.8 26 46-71 2-27 (73)
270 COG0018 ArgS Arginyl-tRNA synt 26.3 4.2E+02 0.009 26.2 8.6 101 16-144 56-165 (577)
271 PF02829 3H: 3H domain; Inter 26.3 1.4E+02 0.003 21.7 4.2 51 17-67 8-58 (98)
272 PRK09890 cold shock protein Cs 25.6 48 0.001 22.4 1.6 19 31-54 7-25 (70)
273 COG3254 Uncharacterized conser 25.5 2.5E+02 0.0055 20.6 5.3 43 21-63 27-69 (105)
274 PF10567 Nab6_mRNP_bdg: RNA-re 25.2 1.4E+02 0.003 26.4 4.6 55 107-161 13-78 (309)
275 KOG0156 Cytochrome P450 CYP2 s 25.2 1.4E+02 0.0031 28.6 5.2 59 10-75 36-97 (489)
276 PRK10354 RNA chaperone/anti-te 24.5 51 0.0011 22.2 1.5 18 31-53 7-24 (70)
277 TIGR02542 B_forsyth_147 Bacter 24.3 3.1E+02 0.0066 20.6 5.6 24 14-39 11-34 (145)
278 PF15063 TC1: Thyroid cancer p 23.2 52 0.0011 22.5 1.3 25 10-34 29-53 (79)
279 COG0445 GidA Flavin-dependent 22.5 4.2E+02 0.0091 26.0 7.5 96 46-144 237-336 (621)
280 PF15407 Spo7_2_N: Sporulation 22.5 32 0.0007 23.1 0.2 25 4-28 25-49 (67)
281 COG5193 LHP1 La protein, small 22.3 38 0.00082 31.1 0.7 59 5-63 173-244 (438)
282 PRK05738 rplW 50S ribosomal pr 21.6 2.7E+02 0.0059 19.9 4.9 31 8-38 21-53 (92)
283 cd04458 CSP_CDS Cold-Shock Pro 21.6 72 0.0016 20.7 1.8 10 45-54 12-21 (65)
284 COG0030 KsgA Dimethyladenosine 21.5 1.2E+02 0.0025 26.5 3.5 32 7-38 96-127 (259)
285 PRK02302 hypothetical protein; 21.4 2E+02 0.0044 20.5 4.0 37 27-69 23-59 (89)
286 PF08442 ATP-grasp_2: ATP-gras 21.1 2.1E+02 0.0046 23.8 4.9 54 18-71 25-81 (202)
287 PRK02886 hypothetical protein; 20.6 2.2E+02 0.0047 20.3 4.0 37 27-69 21-57 (87)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=2.7e-30 Score=231.38 Aligned_cols=163 Identities=26% Similarity=0.364 Sum_probs=141.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
...++|||+|||+++|+++|+++|+.||+|++|+|+. +++++|||||+|.++++|++|++.|||..+.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 3578999999999999999999999999999999953 6788999999999999999999999999999999999997
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecC
Q 021177 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTS 156 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~ 156 (316)
..... ....++|||.|||..+++++|+++|.+||.|..+.++.+..+ +||||+|.+
T Consensus 185 ~p~~~--------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~ 244 (346)
T TIGR01659 185 RPGGE--------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNK 244 (346)
T ss_pred ccccc--------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECC
Confidence 64321 112458999999999999999999999999999999877543 699999999
Q ss_pred HHHHHHHHHHhCCceecccccceEEEEEeecc
Q 021177 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (316)
Q Consensus 157 ~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (316)
.++|++|++.||+..+.+.. ..+.|..+..
T Consensus 245 ~e~A~~Ai~~lng~~~~g~~--~~l~V~~a~~ 274 (346)
T TIGR01659 245 REEAQEAISALNNVIPEGGS--QPLTVRLAEE 274 (346)
T ss_pred HHHHHHHHHHhCCCccCCCc--eeEEEEECCc
Confidence 99999999999999987742 3566655443
No 2
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=6.9e-29 Score=193.62 Aligned_cols=184 Identities=62% Similarity=1.056 Sum_probs=160.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
|+++.+++|||||||.++.+.+|.+||.+||.|.+|.|+....+..||||+|+++.+|+.|+..-+|..++|..|.|+++
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 78899999999999999999999999999999999999877777889999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCC---------CCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEE
Q 021177 81 HGGRRHSSSMDRYSSYSS---------GGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGI 151 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~af 151 (316)
........ +...++. +...++.......|.|.+||+..+++||++++.+.|.|+...+.++. ++.
T Consensus 81 rggr~s~~---~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg---~Gv 154 (241)
T KOG0105|consen 81 RGGRSSSD---RRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG---VGV 154 (241)
T ss_pred cCCCcccc---cccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc---cee
Confidence 88763322 2222221 12346677888999999999999999999999999999999999885 799
Q ss_pred EEecCHHHHHHHHHHhCCceecccccceEEEEEeeccCC
Q 021177 152 VDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (316)
Q Consensus 152 V~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~~r 190 (316)
|+|...++++.|+.+|+...+........|++.......
T Consensus 155 V~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~~ 193 (241)
T KOG0105|consen 155 VEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENRD 193 (241)
T ss_pred eeeeehhhHHHHHHhhccccccCcCcEeeEEecccCCCc
Confidence 999999999999999999998876667788887776553
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=5.8e-28 Score=220.20 Aligned_cols=163 Identities=21% Similarity=0.361 Sum_probs=142.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
++..+|||+|||.++|+++|+++|+.||+|.+|+|+. +++++|||||+|.++++|++|++.|||..+.|+.|.|.++
T Consensus 1 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 1 ESKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 3678999999999999999999999999999999953 6789999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecC----CCeEEEEEecC
Q 021177 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTS 156 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~----~~~~afV~f~~ 156 (316)
.+.... ....+|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|++
T Consensus 81 ~~~~~~--------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~ 140 (352)
T TIGR01661 81 RPSSDS--------------------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDK 140 (352)
T ss_pred cccccc--------------------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECC
Confidence 653311 124589999999999999999999999999999988764 34799999999
Q ss_pred HHHHHHHHHHhCCceecccccceEEEEEeecc
Q 021177 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (316)
Q Consensus 157 ~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (316)
.++|+.|++.|||..+.|.. ..+.+.....
T Consensus 141 ~~~A~~ai~~l~g~~~~g~~--~~i~v~~a~~ 170 (352)
T TIGR01661 141 RDEADRAIKTLNGTTPSGCT--EPITVKFANN 170 (352)
T ss_pred HHHHHHHHHHhCCCccCCCc--eeEEEEECCC
Confidence 99999999999999988742 3566665543
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=1.1e-27 Score=225.46 Aligned_cols=172 Identities=20% Similarity=0.315 Sum_probs=143.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
...++|||+|||+++|+++|+++|++||.|..|.|.. +++++|||||+|.+.++|++|++.|||..|+|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3567999999999999999999999999999999954 6889999999999999999999999999999999999864
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecC
Q 021177 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTS 156 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~ 156 (316)
.......... ...........+|||+||+..+++++|+++|+.||.|..+.+..++. .|||||+|.+
T Consensus 185 ~~~p~a~~~~---------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~ 255 (612)
T TIGR01645 185 SNMPQAQPII---------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN 255 (612)
T ss_pred cccccccccc---------ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECC
Confidence 3221110000 00011122356999999999999999999999999999999998754 3799999999
Q ss_pred HHHHHHHHHHhCCceecccccceEEEEEeecc
Q 021177 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (316)
Q Consensus 157 ~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (316)
.++|.+|++.||+..++| ..|+|..+..
T Consensus 256 ~e~A~kAI~amNg~elgG----r~LrV~kAi~ 283 (612)
T TIGR01645 256 LQSQSEAIASMNLFDLGG----QYLRVGKCVT 283 (612)
T ss_pred HHHHHHHHHHhCCCeeCC----eEEEEEecCC
Confidence 999999999999999999 5888876554
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=8.4e-27 Score=219.75 Aligned_cols=172 Identities=20% Similarity=0.282 Sum_probs=144.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
+.+.++|||+|||..+|+++|.++|+.||+|.+|.|+. ++.++|||||+|.+.++|.+|+. |+|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 35688999999999999999999999999999999964 57889999999999999999998 999999999999998
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEec
Q 021177 80 AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYT 155 (316)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~ 155 (316)
+............ ......+...+|||+|||..+++++|.++|.+||.|..+.+..+..+ +||||+|.
T Consensus 165 ~~~~~~~~~~~~~--------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~ 236 (457)
T TIGR01622 165 SQAEKNRAAKAAT--------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFH 236 (457)
T ss_pred cchhhhhhhhccc--------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEEC
Confidence 6543221110000 00011123679999999999999999999999999999999987654 79999999
Q ss_pred CHHHHHHHHHHhCCceecccccceEEEEEeec
Q 021177 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (316)
Q Consensus 156 ~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (316)
+.++|..|+..|||..+.| ..|.|....
T Consensus 237 ~~e~A~~A~~~l~g~~i~g----~~i~v~~a~ 264 (457)
T TIGR01622 237 DAEEAKEALEVMNGFELAG----RPIKVGYAQ 264 (457)
T ss_pred CHHHHHHHHHhcCCcEECC----EEEEEEEcc
Confidence 9999999999999999998 578887755
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=6.7e-26 Score=206.62 Aligned_cols=181 Identities=24% Similarity=0.323 Sum_probs=142.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCC--ceEEEEE
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g--~~l~v~~ 79 (316)
..++|||+|||+.+++++|.++|++||.|..+.+.. ++.++|||||+|.+.++|+.|++.|||..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 456899999999999999999999999999999854 46789999999999999999999999999987 5788888
Q ss_pred cccCCCCCCC-------------CCC-CCC----------------------------------------------CCCC
Q 021177 80 AHGGRRHSSS-------------MDR-YSS----------------------------------------------YSSG 99 (316)
Q Consensus 80 a~~~~~~~~~-------------~~~-~~~----------------------------------------------~~~~ 99 (316)
+......... ... ... ....
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 7644311000 000 000 0000
Q ss_pred ------------CCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHH
Q 021177 100 ------------GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYA 163 (316)
Q Consensus 100 ------------~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A 163 (316)
...+.....+..|||+|||+.+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 00000012234699999999999999999999999999999998763 47999999999999999
Q ss_pred HHHhCCceecccccceEEEEEeeccC
Q 021177 164 IRKLDRSEFRNAFSRSYVRVREYDSR 189 (316)
Q Consensus 164 ~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (316)
+..|||..+.| +.|+|.....+
T Consensus 328 i~~lnG~~~~g----r~i~V~~~~~~ 349 (352)
T TIGR01661 328 ILSLNGYTLGN----RVLQVSFKTNK 349 (352)
T ss_pred HHHhCCCEECC----eEEEEEEccCC
Confidence 99999999999 58888876543
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=4.9e-26 Score=214.71 Aligned_cols=171 Identities=16% Similarity=0.178 Sum_probs=141.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHh--CCCcccCCceEEEEEccc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG--RDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~--l~g~~~~g~~l~v~~a~~ 82 (316)
|+++|||+|||+++|+++|.++|++||.|..|.|+. .++||||+|.+.++|++|++. +++..+.|++|.|+|+..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 689999999999999999999999999999999974 478999999999999999986 478999999999999875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHH
Q 021177 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKY 162 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~ 162 (316)
......... ...........+|+|.||++.+++++|.++|..||.|..+.+..+...++|||+|.+.++|.+
T Consensus 78 ~~~~~~~~~--------~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~ 149 (481)
T TIGR01649 78 QEIKRDGNS--------DFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQH 149 (481)
T ss_pred cccccCCCC--------cccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHH
Confidence 432211100 000011123457999999999999999999999999999999887776799999999999999
Q ss_pred HHHHhCCceecccccceEEEEEeecc
Q 021177 163 AIRKLDRSEFRNAFSRSYVRVREYDS 188 (316)
Q Consensus 163 A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (316)
|++.|||..+.|. ...++++.++.
T Consensus 150 A~~~Lng~~i~~~--~~~l~v~~sk~ 173 (481)
T TIGR01649 150 AKAALNGADIYNG--CCTLKIEYAKP 173 (481)
T ss_pred HHHHhcCCcccCC--ceEEEEEEecC
Confidence 9999999999763 14677776654
No 8
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=9.6e-27 Score=191.92 Aligned_cols=167 Identities=19% Similarity=0.311 Sum_probs=142.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
-.|||+.|.+.++-++|++.|.+||+|.+.+++. |+++||||||.|-+.++|+.|+..|||..|.++.|...|+..+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 3589999999999999999999999999999954 7899999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHH
Q 021177 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYA 163 (316)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A 163 (316)
...... .+..-..-.....+..++|||+|++..+++++|++.|..||.|..+++.++. ||+||.|++.|.|.+|
T Consensus 143 p~e~n~----~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q--GYaFVrF~tkEaAahA 216 (321)
T KOG0148|consen 143 PSEMNG----KPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ--GYAFVRFETKEAAAHA 216 (321)
T ss_pred ccccCC----CCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--ceEEEEecchhhHHHH
Confidence 521110 0000001122344568899999999999999999999999999999999886 5999999999999999
Q ss_pred HHHhCCceecccccce
Q 021177 164 IRKLDRSEFRNAFSRS 179 (316)
Q Consensus 164 ~~~l~g~~~~g~~~~~ 179 (316)
+..+|+.++.|..+++
T Consensus 217 Iv~mNntei~G~~VkC 232 (321)
T KOG0148|consen 217 IVQMNNTEIGGQLVRC 232 (321)
T ss_pred HHHhcCceeCceEEEE
Confidence 9999999999964444
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=1e-25 Score=217.30 Aligned_cols=157 Identities=24% Similarity=0.392 Sum_probs=137.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCC
Q 021177 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (316)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (316)
+|||||||+++|+++|.++|++||.|.+|+|.. +++++|||||+|.+.++|++|++.||+..+.|+.|.|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999954 57889999999999999999999999999999999999975322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC---CeEEEEEecCHHHHH
Q 021177 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMK 161 (316)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~~~afV~f~~~~~A~ 161 (316)
... .....+|||+|||.++++++|.++|++||.|..|.+..+.. .+||||+|++.++|.
T Consensus 82 ~~~------------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~ 143 (562)
T TIGR01628 82 SLR------------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAK 143 (562)
T ss_pred ccc------------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHH
Confidence 110 11245799999999999999999999999999999988754 379999999999999
Q ss_pred HHHHHhCCceecccccceEEEEEee
Q 021177 162 YAIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 162 ~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
+|++++||..+.|+ .+.+...
T Consensus 144 ~Ai~~lng~~~~~~----~i~v~~~ 164 (562)
T TIGR01628 144 AAIQKVNGMLLNDK----EVYVGRF 164 (562)
T ss_pred HHHHHhcccEecCc----eEEEecc
Confidence 99999999999984 6666543
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=3.8e-25 Score=208.67 Aligned_cols=182 Identities=20% Similarity=0.242 Sum_probs=141.1
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 4 RSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 4 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
.++++|||+|||+ .+|+++|+++|+.||.|..|+++.+ .+|||||+|.+.++|..|+..|||..|.|+.|.|.+++.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 4678999999998 6999999999999999999999765 369999999999999999999999999999999999876
Q ss_pred CCCCCCCC----CCC---CCCCCCC--CC--------CCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCC--eEEEEEee
Q 021177 83 GRRHSSSM----DRY---SSYSSGG--SR--------GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFR 143 (316)
Q Consensus 83 ~~~~~~~~----~~~---~~~~~~~--~~--------~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~--v~~~~~~~ 143 (316)
........ +.. ..+.... .. .....+..+|||.|||..+++++|+++|..||. +..+.+..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~ 430 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFP 430 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEec
Confidence 43211110 000 0111100 00 011235679999999999999999999999998 77777764
Q ss_pred cC--CCeEEEEEecCHHHHHHHHHHhCCceecccccce--EEEEEeec
Q 021177 144 DR--GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS--YVRVREYD 187 (316)
Q Consensus 144 ~~--~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~--~i~v~~~~ 187 (316)
.. ..++|||+|.+.++|.+|+..||+..+.++.... .+++..++
T Consensus 431 ~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 431 KDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFST 478 (481)
T ss_pred CCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEecc
Confidence 33 2379999999999999999999999999853221 35665554
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=9.2e-25 Score=205.48 Aligned_cols=176 Identities=23% Similarity=0.358 Sum_probs=137.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccC-CceEEEEEccc
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAHG 82 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~-g~~l~v~~a~~ 82 (316)
.++|||+|||+++++++|+++|++||.|.+++|+. ++.++|||||+|.+.++|++|++.||+..+. |+.|.|.++..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 58999999999999999999999999999999964 5789999999999999999999999998885 77776654421
Q ss_pred CCC---------CC----------------------CCCC--CCCCC-----C-------------CC-----C------
Q 021177 83 GRR---------HS----------------------SSMD--RYSSY-----S-------------SG-----G------ 100 (316)
Q Consensus 83 ~~~---------~~----------------------~~~~--~~~~~-----~-------------~~-----~------ 100 (316)
... .. .... ....+ . .. +
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 100 00 0000 00000 0 00 0
Q ss_pred ----C---CCCCCCCCceEEEeCCCCCCCHHHHHHHHhhc--CCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCce
Q 021177 101 ----S---RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171 (316)
Q Consensus 101 ----~---~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~ 171 (316)
. .........+|||+||+..+++++|+++|.+| |.|+.+.+..+ ||||+|++.++|++|++.||+..
T Consensus 218 wA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg----fAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 218 WAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD----YAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred eecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC----eEEEEeCCHHHHHHHHHHhCCCE
Confidence 0 00011234689999999999999999999999 99999988764 99999999999999999999999
Q ss_pred ecccccceEEEEEeeccC
Q 021177 172 FRNAFSRSYVRVREYDSR 189 (316)
Q Consensus 172 ~~g~~~~~~i~v~~~~~~ 189 (316)
+.| +.|.|..+.+.
T Consensus 294 i~G----r~I~V~~Akp~ 307 (578)
T TIGR01648 294 LEG----SEIEVTLAKPV 307 (578)
T ss_pred ECC----EEEEEEEccCC
Confidence 999 58888877654
No 12
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=3.1e-26 Score=190.71 Aligned_cols=143 Identities=29% Similarity=0.536 Sum_probs=132.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCCCC
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (316)
-+|||||||..+++.+|+.+|++||+|.+|.|+ |.||||..++...|..|+.+|||..|+|..|.|+-++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs-- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS-- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccC--
Confidence 469999999999999999999999999999998 7899999999999999999999999999999999988653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHH
Q 021177 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 166 (316)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~ 166 (316)
...++++|+|+.+.++.++|+..|.+||.|..|+|+++ |+||.|+-.++|..|+..
T Consensus 76 --------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~ 131 (346)
T KOG0109|consen 76 --------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRG 131 (346)
T ss_pred --------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhc
Confidence 12459999999999999999999999999999999998 999999999999999999
Q ss_pred hCCceecccccceE
Q 021177 167 LDRSEFRNAFSRSY 180 (316)
Q Consensus 167 l~g~~~~g~~~~~~ 180 (316)
||+.++.|+..++.
T Consensus 132 l~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 132 LDNTEFQGKRMHVQ 145 (346)
T ss_pred ccccccccceeeee
Confidence 99999999744433
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=1.7e-24 Score=206.71 Aligned_cols=177 Identities=19% Similarity=0.271 Sum_probs=135.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcC------------CCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCccc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKY------------GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~------------G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~ 70 (316)
+...++|||||||+.+|+++|.++|..+ +.|..+.+. ..+|||||+|.+.++|..||. |||+.|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---KEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---CCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 4578899999999999999999999975 345555543 458999999999999999996 999999
Q ss_pred CCceEEEEEcccCCCCCCCC-----CCCCCCCCC----CCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEE
Q 021177 71 DGYRLRVELAHGGRRHSSSM-----DRYSSYSSG----GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 141 (316)
Q Consensus 71 ~g~~l~v~~a~~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~ 141 (316)
.|..|.|.........+... ......... ...........+|||+|||..+++++|.++|..||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 99999997544322111000 000000000 011112345679999999999999999999999999999999
Q ss_pred eecC----CCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeec
Q 021177 142 FRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (316)
Q Consensus 142 ~~~~----~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (316)
+.+. ..|||||+|.+.++|..|+..|||..+.|. .|.|..+.
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~----~l~v~~a~ 373 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN----KLHVQRAC 373 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCe----EEEEEECc
Confidence 8764 347999999999999999999999999984 67777654
No 14
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.1e-25 Score=183.00 Aligned_cols=164 Identities=22% Similarity=0.340 Sum_probs=145.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
+..++|.|.-||.++|++||+.+|...|+|+.|+++. +|++-|||||-|.++++|++|+..|||..+..+.|+|.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 4456789999999999999999999999999999954 7899999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecC
Q 021177 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTS 156 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~ 156 (316)
.+... ...+..|||.+||..+++.+|+++|.+||.|....+..+..+ |.+||.|+.
T Consensus 119 RPSs~--------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDK 178 (360)
T KOG0145|consen 119 RPSSD--------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDK 178 (360)
T ss_pred cCChh--------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecc
Confidence 86432 233569999999999999999999999999999888877654 699999999
Q ss_pred HHHHHHHHHHhCCceecccccceEEEEEeeccC
Q 021177 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (316)
Q Consensus 157 ~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (316)
..+|+.|+..|||..-.|. ..+|.|.++...
T Consensus 179 r~EAe~AIk~lNG~~P~g~--tepItVKFannP 209 (360)
T KOG0145|consen 179 RIEAEEAIKGLNGQKPSGC--TEPITVKFANNP 209 (360)
T ss_pred hhHHHHHHHhccCCCCCCC--CCCeEEEecCCc
Confidence 9999999999999998885 346888876543
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=3.2e-24 Score=204.84 Aligned_cols=179 Identities=20% Similarity=0.299 Sum_probs=138.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
++.++|||+|||..+|+++|.++|+.||.|..+.|.. +|.++|||||+|.+.++|..|+..|||+.|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999999853 6789999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCC--CCCC--CCCC----CCCCCCCCceEEEeCCCCCC----------CHHHHHHHHhhcCCeEEEEEe
Q 021177 81 HGGRRHSSSMDRY--SSYS--SGGS----RGVSRRSDYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVF 142 (316)
Q Consensus 81 ~~~~~~~~~~~~~--~~~~--~~~~----~~~~~~~~~~l~V~nl~~~~----------t~~~l~~~f~~~G~v~~~~~~ 142 (316)
............. .... .... ......+..+|+|.|+...- ..++|+++|.+||.|..+.|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 7543322111000 0000 0000 01112345688999986421 136799999999999999998
Q ss_pred ecC-------CCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEee
Q 021177 143 RDR-------GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 143 ~~~-------~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
.+. ..|++||+|.+.++|++|+.+|||..|.|+ .|.+...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr----~v~~~~~ 499 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDR----VVVAAFY 499 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCe----EEEEEEe
Confidence 752 126999999999999999999999999994 6666654
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.92 E-value=3.4e-24 Score=206.78 Aligned_cols=178 Identities=19% Similarity=0.310 Sum_probs=144.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccC----CceEEEE
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD----GYRLRVE 78 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~----g~~l~v~ 78 (316)
..++|||+|||.++|+++|+++|+.||+|..+.+.. ++.++|||||+|.+.++|.+|++.|||..+. |+.|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 457899999999999999999999999999999964 5678999999999999999999999999999 9999998
Q ss_pred EcccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC---CeEEEEEec
Q 021177 79 LAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYT 155 (316)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~~~afV~f~ 155 (316)
++.......... ...+..............+|||+||+..+++++|+++|.+||.|..+.+..+.. .|||||+|.
T Consensus 257 ~a~~k~er~~~~--~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 257 RAQKRAEREAEL--RRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFS 334 (562)
T ss_pred cccChhhhHHHH--HhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeC
Confidence 876543221000 000000000111233466899999999999999999999999999999998753 379999999
Q ss_pred CHHHHHHHHHHhCCceecccccceEEEEEeecc
Q 021177 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (316)
Q Consensus 156 ~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (316)
+.++|.+|+..|||..+.|+ .+.|..+..
T Consensus 335 ~~~~A~~A~~~~~g~~~~gk----~l~V~~a~~ 363 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGGK----PLYVALAQR 363 (562)
T ss_pred CHHHHHHHHHHhcCCeeCCc----eeEEEeccC
Confidence 99999999999999999994 777766554
No 17
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.8e-24 Score=188.97 Aligned_cols=167 Identities=21% Similarity=0.399 Sum_probs=142.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCccc-CC--ceEEEE
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF-DG--YRLRVE 78 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~-~g--~~l~v~ 78 (316)
+.-+||||-||..++|.||+++|++||.|.+|.|.. ++.++|||||.|.+.++|.+|+..|++... .| .+|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 456799999999999999999999999999999955 678999999999999999999999988644 34 578888
Q ss_pred EcccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC---eEEEEEec
Q 021177 79 LAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYT 155 (316)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~f~ 155 (316)
++......- ..+.+|||+-|+..+++.+++++|.+||.|++|.|.++..+ |||||.|.
T Consensus 113 ~Ad~E~er~-------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fs 173 (510)
T KOG0144|consen 113 YADGERERI-------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFS 173 (510)
T ss_pred ccchhhhcc-------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEe
Confidence 887654321 22569999999999999999999999999999999998765 79999999
Q ss_pred CHHHHHHHHHHhCCce-ecccccceEEEEEeeccCCCc
Q 021177 156 SYDDMKYAIRKLDRSE-FRNAFSRSYVRVREYDSRRSY 192 (316)
Q Consensus 156 ~~~~A~~A~~~l~g~~-~~g~~~~~~i~v~~~~~~r~~ 192 (316)
+.+-|..|++.|||.. +.|. ..++-|.+++..+++
T Consensus 174 tke~A~~Aika~ng~~tmeGc--s~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 174 TKEMAVAAIKALNGTQTMEGC--SQPLVVKFADTQKDK 209 (510)
T ss_pred hHHHHHHHHHhhccceeeccC--CCceEEEecccCCCc
Confidence 9999999999999965 4453 357888887776543
No 18
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=8.3e-24 Score=185.63 Aligned_cols=175 Identities=22% Similarity=0.311 Sum_probs=138.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCccc-CCceEEEEEcc
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF-DGYRLRVELAH 81 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~-~g~~l~v~~a~ 81 (316)
.+-||||.||.++.|++|.-+|++.|+|-+++|+. +|.++|||||.|.+.+.|++|++.||+.+| .|+.|.|..+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 46799999999999999999999999999999954 689999999999999999999999999998 59998888754
Q ss_pred cCC-------CCCC------------------------CCCC--CCCC-----CCC------------------------
Q 021177 82 GGR-------RHSS------------------------SMDR--YSSY-----SSG------------------------ 99 (316)
Q Consensus 82 ~~~-------~~~~------------------------~~~~--~~~~-----~~~------------------------ 99 (316)
.+. ++.+ ..+. ...+ ...
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 221 0000 0000 0000 000
Q ss_pred -------CCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCcee
Q 021177 100 -------GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172 (316)
Q Consensus 100 -------~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~ 172 (316)
............|||.||+.++|++.|+++|.+||.|+.+..++| ||||.|.+.++|.+|++.+||+++
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkel 318 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKEL 318 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCcee
Confidence 000001123458999999999999999999999999999999987 999999999999999999999999
Q ss_pred cccccceEEEEEeecc
Q 021177 173 RNAFSRSYVRVREYDS 188 (316)
Q Consensus 173 ~g~~~~~~i~v~~~~~ 188 (316)
+|. .|.+..+++
T Consensus 319 dG~----~iEvtLAKP 330 (506)
T KOG0117|consen 319 DGS----PIEVTLAKP 330 (506)
T ss_pred cCc----eEEEEecCC
Confidence 995 666665554
No 19
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=2.9e-24 Score=167.59 Aligned_cols=162 Identities=24% Similarity=0.347 Sum_probs=139.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
+...|||||||+..++++.|+++|-+.|+|.++.|+. +...+|||||||.++|+|+-|++.||...+.|++|+|.-+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4578999999999999999999999999999999965 5678999999999999999999999999999999999887
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEE-EEeecCC----CeEEEEEec
Q 021177 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRG----GMTGIVDYT 155 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~-~~~~~~~----~~~afV~f~ 155 (316)
..... ....+..+||+||.+.+++..|.+.|+.||.+... .++.++. .+++||.|.
T Consensus 87 s~~~~-------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~ 147 (203)
T KOG0131|consen 87 SAHQK-------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYA 147 (203)
T ss_pred ccccc-------------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEech
Confidence 62221 11224699999999999999999999999998763 5555544 359999999
Q ss_pred CHHHHHHHHHHhCCceecccccceEEEEEeecc
Q 021177 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (316)
Q Consensus 156 ~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (316)
+.+.+.+|+..+||..+.+ +++++.....
T Consensus 148 sfeasd~ai~s~ngq~l~n----r~itv~ya~k 176 (203)
T KOG0131|consen 148 SFEASDAAIGSMNGQYLCN----RPITVSYAFK 176 (203)
T ss_pred hHHHHHHHHHHhccchhcC----CceEEEEEEe
Confidence 9999999999999999998 4677766544
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=3.9e-23 Score=194.81 Aligned_cols=177 Identities=20% Similarity=0.307 Sum_probs=137.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
.++|||+|||..+|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 58999999999999999999999999999999964 467899999999999999999999999999999999999653
Q ss_pred CCCCCCCC------------C------------------C---CC---CCCC------------------------CC--
Q 021177 83 GRRHSSSM------------D------------------R---YS---SYSS------------------------GG-- 100 (316)
Q Consensus 83 ~~~~~~~~------------~------------------~---~~---~~~~------------------------~~-- 100 (316)
........ . . .. .... ..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 21100000 0 0 00 0000 00
Q ss_pred ----C-CCC---CCCCCceEEEeCCCCCCC----------HHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHH
Q 021177 101 ----S-RGV---SRRSDYRVLVTGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKY 162 (316)
Q Consensus 101 ----~-~~~---~~~~~~~l~V~nl~~~~t----------~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~ 162 (316)
. ..+ ...+...|+|.||....+ .+||.+.|.+||.|..+.+......|++||+|.+.++|..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 0 000 113456788888855443 3689999999999999999877777899999999999999
Q ss_pred HHHHhCCceecccccceEEEEEee
Q 021177 163 AIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 163 A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
|+..|||..++|+ .|.+...
T Consensus 426 A~~~lnGr~f~gr----~i~~~~~ 445 (457)
T TIGR01622 426 AFQALNGRYFGGK----MITAAFV 445 (457)
T ss_pred HHHHhcCcccCCe----EEEEEEE
Confidence 9999999999994 6666554
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1.8e-22 Score=181.17 Aligned_cols=180 Identities=20% Similarity=0.299 Sum_probs=147.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
.||||++||+.+|.++|.++|+.+|+|..+.+.. .+..+|||||.|.-+++++.|+..+++..|.|+.|.|.++...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 8999999999999999999999999999999965 3467999999999999999999999999999999999998865
Q ss_pred CCCCCCCC--CC---CCCCCCCC-CCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC---eEEEEEe
Q 021177 84 RRHSSSMD--RY---SSYSSGGS-RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDY 154 (316)
Q Consensus 84 ~~~~~~~~--~~---~~~~~~~~-~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~f 154 (316)
........ +. .+..+... -.....+.+.|+|.|||+.+...+|+.+|+.||.|..+.|+....+ |||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 43331100 00 00000000 0011223789999999999999999999999999999999987766 6999999
Q ss_pred cCHHHHHHHHHHhCCceecccccceEEEEEeeccCC
Q 021177 155 TSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (316)
Q Consensus 155 ~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~~r 190 (316)
....+|..|++.+|+..|.| +.+-|+++-...
T Consensus 166 k~~~dA~~Al~~~N~~~i~g----R~VAVDWAV~Kd 197 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDG----RPVAVDWAVDKD 197 (678)
T ss_pred eeHHHHHHHHHhccCceecC----ceeEEeeecccc
Confidence 99999999999999999999 577777655443
No 22
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=2.2e-22 Score=165.03 Aligned_cols=164 Identities=38% Similarity=0.618 Sum_probs=133.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCCCC
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (316)
..+|||+||+.+.+.+|..+|..||.|.++.|+ .||+||+|.++.+|..|+..|||..|.|..+.|+++......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 358999999999999999999999999999998 789999999999999999999999999999999998864322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHH
Q 021177 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 166 (316)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~ 166 (316)
..........+......++......+.|.+++..+.+++|.+.|.++|.+....+.. +++||+|.+.++|..|++.
T Consensus 77 ~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~----~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 77 RGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARR----NFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred cCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhc----cccceeehhhhhhhhcchh
Confidence 210000000001122344556778999999999999999999999999996554422 3799999999999999999
Q ss_pred hCCceecccccceEEEE
Q 021177 167 LDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 167 l~g~~~~g~~~~~~i~v 183 (316)
+++.++.+. .+.+
T Consensus 153 l~~~~~~~~----~l~~ 165 (216)
T KOG0106|consen 153 LDGKKLNGR----RISV 165 (216)
T ss_pred ccchhhcCc----eeee
Confidence 999999994 5655
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=3.1e-21 Score=158.60 Aligned_cols=177 Identities=23% Similarity=0.333 Sum_probs=141.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCC--ceEEEEEc
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELA 80 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g--~~l~v~~a 80 (316)
..+|||.+||..+|..||.++|++||.|..-+|.. +|.++|.|||.|...++|+.|+..|||..-.| .+|.|+|+
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 45799999999999999999999999999888843 68899999999999999999999999988766 47999999
Q ss_pred ccCCCCCCCCCCC-------CCCCCC--------------------CC----------------CCCCCCCCceEEEeCC
Q 021177 81 HGGRRHSSSMDRY-------SSYSSG--------------------GS----------------RGVSRRSDYRVLVTGL 117 (316)
Q Consensus 81 ~~~~~~~~~~~~~-------~~~~~~--------------------~~----------------~~~~~~~~~~l~V~nl 117 (316)
..+.......... ..+.+. .. -++....++.|||-||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 8654322110000 000000 00 0112235689999999
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEee
Q 021177 118 PSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 118 ~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
.+++++.-|.++|..||.|.++.+++|..+ ||+||.+.+.++|..|+..|||..+.++ -+.|.+.
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r----vLQVsFK 355 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR----VLQVSFK 355 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccce----EEEEEEe
Confidence 999999999999999999999999998653 7999999999999999999999999984 5555554
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=5.5e-21 Score=171.66 Aligned_cols=171 Identities=21% Similarity=0.384 Sum_probs=134.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
+.-.|.|.|||+.+.+.+|..+|+.||.|.+|.|+. +|+..|||||.|.+..+|.+|++.+||..|+|++|-|.||-.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 355799999999999999999999999999999964 667779999999999999999999999999999999999865
Q ss_pred CCCCCCCC-----------------------C--------------CC-CC-----CC---C-------------CCCC-
Q 021177 83 GRRHSSSM-----------------------D--------------RY-SS-----YS---S-------------GGSR- 102 (316)
Q Consensus 83 ~~~~~~~~-----------------------~--------------~~-~~-----~~---~-------------~~~~- 102 (316)
........ + .. .. .. . .+..
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 43211100 0 00 00 00 0 0000
Q ss_pred ----------CCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHh-
Q 021177 103 ----------GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKL- 167 (316)
Q Consensus 103 ----------~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l- 167 (316)
......+.+|||.|||+++++++|.++|.+||+|.++.++.++.+ |.|||.|.++.+|+.|+...
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 001113479999999999999999999999999999999988765 69999999999999999876
Q ss_pred ----CC-ceeccc
Q 021177 168 ----DR-SEFRNA 175 (316)
Q Consensus 168 ----~g-~~~~g~ 175 (316)
.| ..++|+
T Consensus 356 pa~e~g~~ll~GR 368 (678)
T KOG0127|consen 356 PASEDGSVLLDGR 368 (678)
T ss_pred ccCCCceEEEecc
Confidence 23 455664
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=9e-22 Score=168.79 Aligned_cols=166 Identities=21% Similarity=0.353 Sum_probs=138.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
+.||||.|...+.|+-|+..|.+||+|+.|.|.+ |++.+|||||||+-+|.|..|++.|||.+++|+.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 5799999999999999999999999999999954 6899999999999999999999999999999999999742211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHH
Q 021177 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDD 159 (316)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~ 159 (316)
.....-- ..-......-.+|||..+.++.+++||+..|+.||+|.+|.+...+.+ ||+||+|.+..+
T Consensus 194 pQAQpiI---------D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs 264 (544)
T KOG0124|consen 194 PQAQPII---------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 264 (544)
T ss_pred cccchHH---------HHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccc
Confidence 1000000 000001123469999999999999999999999999999999998765 699999999999
Q ss_pred HHHHHHHhCCceecccccceEEEEEe
Q 021177 160 MKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 160 A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
...|+..||-..++| ..++|..
T Consensus 265 ~~eAiasMNlFDLGG----QyLRVGk 286 (544)
T KOG0124|consen 265 QSEAIASMNLFDLGG----QYLRVGK 286 (544)
T ss_pred hHHHhhhcchhhccc----ceEeccc
Confidence 999999999999999 4666654
No 26
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=2.5e-20 Score=144.78 Aligned_cols=79 Identities=48% Similarity=0.793 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
.-.++||||||+..+|+.||..+|..||+|..|+|.. .+.|||||||+++.+|+.|+..|||..|.|..|.|+++...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 4578999999999999999999999999999999965 56899999999999999999999999999999999998865
Q ss_pred C
Q 021177 84 R 84 (316)
Q Consensus 84 ~ 84 (316)
.
T Consensus 86 ~ 86 (195)
T KOG0107|consen 86 P 86 (195)
T ss_pred c
Confidence 4
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=4.1e-20 Score=166.69 Aligned_cols=149 Identities=25% Similarity=0.348 Sum_probs=132.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCCCC
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (316)
.+|||| +++|+..|.++|+++|+|..+++-.+..+-|||||.|.++++|.+|++.||...+.|++|.+-|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~-- 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP-- 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC--
Confidence 469999 999999999999999999999993211289999999999999999999999999999999999977432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC--eEEEEEecCHHHHHHHH
Q 021177 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAI 164 (316)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~--~~afV~f~~~~~A~~A~ 164 (316)
..+||.||++.++..+|.++|+.||.|..|.+..+.++ || ||+|++.++|.+|+
T Consensus 77 -----------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai 132 (369)
T KOG0123|consen 77 -----------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAI 132 (369)
T ss_pred -----------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHH
Confidence 13999999999999999999999999999999988776 68 99999999999999
Q ss_pred HHhCCceecccccceEEEEEeecc
Q 021177 165 RKLDRSEFRNAFSRSYVRVREYDS 188 (316)
Q Consensus 165 ~~l~g~~~~g~~~~~~i~v~~~~~ 188 (316)
+.+||..+.|+ .|-+.....
T Consensus 133 ~~~ng~ll~~k----ki~vg~~~~ 152 (369)
T KOG0123|consen 133 EKLNGMLLNGK----KIYVGLFER 152 (369)
T ss_pred HHhcCcccCCC----eeEEeeccc
Confidence 99999999995 565554433
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.82 E-value=8.4e-20 Score=169.00 Aligned_cols=164 Identities=23% Similarity=0.405 Sum_probs=136.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CC----CCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PP----RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~----~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
+|||.||++++|.++|..+|...|.|..+.|.. ++ -+.|||||+|.++++|+.|++.|+|..++|+.|.|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 399999999999999999999999999998843 22 245999999999999999999999999999999999988
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCH
Q 021177 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSY 157 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~ 157 (316)
...... .+..-+.....+.|+|.|+|..++..+++++|..||.+..+.++.... .|||||+|-++
T Consensus 597 ~k~~~~-----------~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~ 665 (725)
T KOG0110|consen 597 NKPAST-----------VGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTP 665 (725)
T ss_pred Cccccc-----------cccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCc
Confidence 221110 011112233367999999999999999999999999999999997622 26899999999
Q ss_pred HHHHHHHHHhCCceecccccceEEEEEee
Q 021177 158 DDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 158 ~~A~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
.+|..|+++|....+-|+ .+-++.+
T Consensus 666 ~ea~nA~~al~STHlyGR----rLVLEwA 690 (725)
T KOG0110|consen 666 REAKNAFDALGSTHLYGR----RLVLEWA 690 (725)
T ss_pred HHHHHHHHhhcccceech----hhheehh
Confidence 999999999999999884 4444443
No 29
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=1.1e-18 Score=135.72 Aligned_cols=78 Identities=24% Similarity=0.278 Sum_probs=71.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeec
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (316)
..++|||+||+..+++.||+.+|.+||.+..++|..++. +||||||+++.||+.|+..|||..|.| ..|+|+...
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-GfAFVEFed~RDA~DAvr~LDG~~~cG----~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-GFAFVEFEDPRDAEDAVRYLDGKDICG----SRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-CceEEeccCcccHHHHHhhcCCccccC----ceEEEEeec
Confidence 367999999999999999999999999999999999554 699999999999999999999999999 688888877
Q ss_pred cCC
Q 021177 188 SRR 190 (316)
Q Consensus 188 ~~r 190 (316)
...
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 654
No 30
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.81 E-value=4.7e-19 Score=141.12 Aligned_cols=81 Identities=38% Similarity=0.594 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
+.-.+|.|-||...+|.++|+.+|++||.|-+|.|+. |+.++|||||-|.+..+|+.|++.|+|.+++|+.|.|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 3457899999999999999999999999999999965 6889999999999999999999999999999999999998
Q ss_pred ccCC
Q 021177 81 HGGR 84 (316)
Q Consensus 81 ~~~~ 84 (316)
+...
T Consensus 91 rygr 94 (256)
T KOG4207|consen 91 RYGR 94 (256)
T ss_pred hcCC
Confidence 8654
No 31
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.81 E-value=1.4e-18 Score=141.11 Aligned_cols=172 Identities=22% Similarity=0.325 Sum_probs=140.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHH----HhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEE
Q 021177 1 MSSRSSRTLYVGNLPGDTRMREVED----LFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (316)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~t~~~L~~----~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~ 76 (316)
|+..|+.||||.||+..+..++|+. +|++||+|.+|....+.+.+|-|||.|.+.+.|-.|+..|+|..|-|+++.
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4567888999999999999999888 999999999999988999999999999999999999999999999999999
Q ss_pred EEEcccCCCCCCC-----C-------------------CCCCCCC-C-CCCC----CCCCCCCceEEEeCCCCCCCHHHH
Q 021177 77 VELAHGGRRHSSS-----M-------------------DRYSSYS-S-GGSR----GVSRRSDYRVLVTGLPSSASWQDL 126 (316)
Q Consensus 77 v~~a~~~~~~~~~-----~-------------------~~~~~~~-~-~~~~----~~~~~~~~~l~V~nl~~~~t~~~l 126 (316)
++||+.....-.. . .+...+. . .... .+..++...+++.|||.+++.+.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 9999854311100 0 0000000 0 0000 122456779999999999999999
Q ss_pred HHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceec
Q 021177 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (316)
Q Consensus 127 ~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~ 173 (316)
..+|.+|.....+.+..... +.|||+|.+...|..|...+++..+.
T Consensus 164 ~~lf~qf~g~keir~i~~~~-~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRS-GIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred HHHHhhCcccceeEeccCCC-ceeEEecchhhhhHHHhhhhccceec
Confidence 99999999999988887554 37999999999999999999998876
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.81 E-value=7.7e-18 Score=159.16 Aligned_cols=78 Identities=23% Similarity=0.444 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
..++|||+|||+++++++|+++|+.||+|..+.|.. ++.++|||||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999964 46789999999999999999999999999999999999876
Q ss_pred c
Q 021177 82 G 82 (316)
Q Consensus 82 ~ 82 (316)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2e-18 Score=155.81 Aligned_cols=168 Identities=23% Similarity=0.368 Sum_probs=140.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccC-CCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~-~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
++...|||.||++.+|..+|.++|+.||+|..|++..+ ..++|| ||+|.+++.|++|++.|||..+.|++|.|.....
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 45555999999999999999999999999999999653 238999 9999999999999999999999999999998776
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC---eEEEEEecCHHH
Q 021177 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDD 159 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~f~~~~~ 159 (316)
......... . .....+.++|.|++..+++..|.+.|..+|.|..+.++.+..+ +|+||+|++.++
T Consensus 153 ~~er~~~~~-----------~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~ 220 (369)
T KOG0123|consen 153 KEEREAPLG-----------E-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPED 220 (369)
T ss_pred hhhhccccc-----------c-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhH
Confidence 543222100 1 1233568899999999999999999999999999999986544 699999999999
Q ss_pred HHHHHHHhCCceecccccceEEEEEeecc
Q 021177 160 MKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (316)
Q Consensus 160 A~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (316)
|..|++.+++..+.++ .+.+..+..
T Consensus 221 a~~av~~l~~~~~~~~----~~~V~~aqk 245 (369)
T KOG0123|consen 221 AKKAVETLNGKIFGDK----ELYVGRAQK 245 (369)
T ss_pred HHHHHHhccCCcCCcc----ceeeccccc
Confidence 9999999999999863 555555443
No 34
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.79 E-value=1.4e-19 Score=156.53 Aligned_cols=168 Identities=16% Similarity=0.126 Sum_probs=120.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccC------CCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~------~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~ 76 (316)
+.....|.|.||.+.+|.++|+.||...|+|.++.|..+ ......|||.|.|...+..|.+ |.+++|-|..|.
T Consensus 4 g~~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdrali 82 (479)
T KOG4676|consen 4 GSSLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALI 82 (479)
T ss_pred CCCCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEE
Confidence 345569999999999999999999999999999999541 2345689999999999999987 777777777776
Q ss_pred EEEcccCCCCCC--------CCCCCCCCCCCC------------------CCCCCCC----------CCceEEEeCCCCC
Q 021177 77 VELAHGGRRHSS--------SMDRYSSYSSGG------------------SRGVSRR----------SDYRVLVTGLPSS 120 (316)
Q Consensus 77 v~~a~~~~~~~~--------~~~~~~~~~~~~------------------~~~~~~~----------~~~~l~V~nl~~~ 120 (316)
|.........-. ...-+......+ -..|+.+ ...+++|++|+..
T Consensus 83 v~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~ 162 (479)
T KOG4676|consen 83 VRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISA 162 (479)
T ss_pred EEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhh
Confidence 665432211000 000000000000 0001111 1247899999999
Q ss_pred CCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCcee
Q 021177 121 ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172 (316)
Q Consensus 121 ~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~ 172 (316)
+...++.+.|..+|+|.+.++.......+|.++|........|+. ++|..+
T Consensus 163 ~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~ 213 (479)
T KOG4676|consen 163 AILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRER 213 (479)
T ss_pred hcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhh
Confidence 999999999999999999999988777789999999998888884 555444
No 35
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.9e-18 Score=143.10 Aligned_cols=139 Identities=22% Similarity=0.346 Sum_probs=115.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
|++++.+|||||||..++||+-|..||+++|.|..++|+.+ .|+|.|+
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 56789999999999999999999999999999999998743 4556665
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecC
Q 021177 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTS 156 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~ 156 (316)
..+...+. +.....-.++|+.|...++-++|++.|.+||+|..+++++|..+ ||+||.|.+
T Consensus 49 ~~p~nQsk---------------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~ 113 (321)
T KOG0148|consen 49 TAPGNQSK---------------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPN 113 (321)
T ss_pred cCcccCCC---------------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccc
Confidence 54321111 11122458999999999999999999999999999999998765 699999999
Q ss_pred HHHHHHHHHHhCCceecccccceEEEEEeeccCC
Q 021177 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (316)
Q Consensus 157 ~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~~r 190 (316)
.++|+.|+..|||..+.+ +.|+...+.++.
T Consensus 114 k~dAEnAI~~MnGqWlG~----R~IRTNWATRKp 143 (321)
T KOG0148|consen 114 KEDAENAIQQMNGQWLGR----RTIRTNWATRKP 143 (321)
T ss_pred hHHHHHHHHHhCCeeecc----ceeeccccccCc
Confidence 999999999999999988 588877766554
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=5.6e-18 Score=133.57 Aligned_cols=82 Identities=29% Similarity=0.499 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
..+++|||+|||+++|+++|+++|++||+|.++.|+. +++++|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999999954 5788999999999999999999999999999999999998
Q ss_pred ccCCC
Q 021177 81 HGGRR 85 (316)
Q Consensus 81 ~~~~~ 85 (316)
.....
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76543
No 37
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.77 E-value=4.1e-18 Score=153.91 Aligned_cols=174 Identities=22% Similarity=0.340 Sum_probs=127.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
|-..||||||..++|+++|+.+|++||+|+.|.+.. +|.++|||||+|.+.++|.+|+..|||.++.|+.|+|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 334499999999999999999999999999999953 78999999999999999999999999999999999998755
Q ss_pred cCCCCCCC---------CCCC-CCCCCCC------------------------------------------CCCCCC---
Q 021177 82 GGRRHSSS---------MDRY-SSYSSGG------------------------------------------SRGVSR--- 106 (316)
Q Consensus 82 ~~~~~~~~---------~~~~-~~~~~~~------------------------------------------~~~~~~--- 106 (316)
.....+.. .+.. -.++..+ ....+.
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 33222211 0000 0000000 000000
Q ss_pred ----CCCceEEEeCCCCC--CC--------HHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCcee
Q 021177 107 ----RSDYRVLVTGLPSS--AS--------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172 (316)
Q Consensus 107 ----~~~~~l~V~nl~~~--~t--------~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~ 172 (316)
.+...+.+.|+-.. .| .+++.+.+.++|.|..|.+..+.. |+.||.|.+.++|..|+.+|||.+|
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF 515 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWF 515 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhh
Confidence 12223344444211 11 357888899999999998887766 7999999999999999999999999
Q ss_pred cccccce
Q 021177 173 RNAFSRS 179 (316)
Q Consensus 173 ~g~~~~~ 179 (316)
.|+.+..
T Consensus 516 ~gr~Ita 522 (549)
T KOG0147|consen 516 AGRMITA 522 (549)
T ss_pred ccceeEE
Confidence 9975443
No 38
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.75 E-value=3.8e-17 Score=131.83 Aligned_cols=170 Identities=23% Similarity=0.334 Sum_probs=132.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCC----CcEEEEEECCHHHHHHHHHhCCCcccC---CceEEE
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRP----PGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLRV 77 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~----~g~aFVef~~~e~A~~A~~~l~g~~~~---g~~l~v 77 (316)
.-+||||.+||.++...+|..||..|--.+...++.|++. +.+|||.|.+..+|.+|+..|||+.|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4789999999999999999999999988888888665433 479999999999999999999999996 788999
Q ss_pred EEcccCCCCCCCCCCCCCCCC---------------------------------C-CC----------------------
Q 021177 78 ELAHGGRRHSSSMDRYSSYSS---------------------------------G-GS---------------------- 101 (316)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~---------------------------------~-~~---------------------- 101 (316)
++++.....+....-.++... + ..
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 998865422211000000000 0 00
Q ss_pred ----------CCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCce
Q 021177 102 ----------RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171 (316)
Q Consensus 102 ----------~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~ 171 (316)
.........+|||.||..++++++|+.+|+.|.....+.+........||++|++.+.|..|+..|+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 0000113358999999999999999999999998888887766666699999999999999999999988
Q ss_pred ecc
Q 021177 172 FRN 174 (316)
Q Consensus 172 ~~g 174 (316)
+..
T Consensus 273 ~s~ 275 (284)
T KOG1457|consen 273 LSS 275 (284)
T ss_pred ecc
Confidence 753
No 39
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.75 E-value=9.8e-18 Score=146.31 Aligned_cols=159 Identities=19% Similarity=0.330 Sum_probs=134.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEE
Q 021177 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (316)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v 77 (316)
|+..+.++||||+|++.+|++.|++.|.+||+|.++.++. ++.++||+||+|.+++.+.+++. ...+.|+|+.|.+
T Consensus 1 ~~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 1 SESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEP 79 (311)
T ss_pred CCccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccc
Confidence 3456889999999999999999999999999999999965 67899999999999999999987 6677899999999
Q ss_pred EEcccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEE
Q 021177 78 ELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVD 153 (316)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~ 153 (316)
+.+.+......... .....+|||++||..++++++++.|.+||.|..+.++.+... +|+||.
T Consensus 80 k~av~r~~~~~~~~--------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~ 145 (311)
T KOG4205|consen 80 KRAVSREDQTKVGR--------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVT 145 (311)
T ss_pred eeccCccccccccc--------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeE
Confidence 88776553222110 113569999999999999999999999999999988887654 699999
Q ss_pred ecCHHHHHHHHHHhCCceeccc
Q 021177 154 YTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 154 f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
|.+.+.+.+++ ...-..+.++
T Consensus 146 ~~~e~sVdkv~-~~~f~~~~gk 166 (311)
T KOG4205|consen 146 FDSEDSVDKVT-LQKFHDFNGK 166 (311)
T ss_pred eccccccceec-ccceeeecCc
Confidence 99999999888 5666777775
No 40
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.74 E-value=1.4e-18 Score=156.85 Aligned_cols=169 Identities=20% Similarity=0.301 Sum_probs=138.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
+++.+|+|+--|+..+++.+|.++|+.+|+|.+|.++. ++.++|.|||+|.+.+.+..|+. |.|..+.|.+|.|+.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 35678899999999999999999999999999999954 56889999999999999999997 999999999999998
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEec
Q 021177 80 AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYT 155 (316)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~ 155 (316)
....+.... ........++ ...+...|||+||..++++.+|..+|+.||.|+.+.+..+.. .||+||+|.
T Consensus 255 sEaeknr~a--~~s~a~~~k~----~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~ 328 (549)
T KOG0147|consen 255 SEAEKNRAA--NASPALQGKG----FTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFV 328 (549)
T ss_pred cHHHHHHHH--hccccccccc----cccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEe
Confidence 654332211 0111111111 112223399999999999999999999999999999998853 379999999
Q ss_pred CHHHHHHHHHHhCCceecccccc
Q 021177 156 SYDDMKYAIRKLDRSEFRNAFSR 178 (316)
Q Consensus 156 ~~~~A~~A~~~l~g~~~~g~~~~ 178 (316)
+.++|.+|+++|||.++.|..++
T Consensus 329 ~~~~ar~a~e~lngfelAGr~ik 351 (549)
T KOG0147|consen 329 NKEDARKALEQLNGFELAGRLIK 351 (549)
T ss_pred cHHHHHHHHHHhccceecCceEE
Confidence 99999999999999999996433
No 41
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=2.8e-17 Score=144.22 Aligned_cols=80 Identities=28% Similarity=0.425 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcc-cC--CceEEEEE
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYN-FD--GYRLRVEL 79 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~-~~--g~~l~v~~ 79 (316)
++++||||-|+..+||.+|+++|++||.|++|.|.. ++.++|||||.|.+.|.|..|++.|||.. +. ..+|.|.|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 367899999999999999999999999999999966 57899999999999999999999999953 44 46899999
Q ss_pred cccCC
Q 021177 80 AHGGR 84 (316)
Q Consensus 80 a~~~~ 84 (316)
+...+
T Consensus 203 ADtqk 207 (510)
T KOG0144|consen 203 ADTQK 207 (510)
T ss_pred cccCC
Confidence 87544
No 42
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=7.4e-17 Score=135.45 Aligned_cols=86 Identities=35% Similarity=0.581 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEec---cCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~---~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
++|-+||||+-|+.+++|..|+..|+.||+|+.|.|+ .||+++|||||+|+++.+...|++..+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 5889999999999999999999999999999999995 4799999999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 021177 80 AHGGRRHSS 88 (316)
Q Consensus 80 a~~~~~~~~ 88 (316)
......+.+
T Consensus 178 ERgRTvkgW 186 (335)
T KOG0113|consen 178 ERGRTVKGW 186 (335)
T ss_pred ccccccccc
Confidence 776544333
No 43
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.73 E-value=8.9e-17 Score=128.23 Aligned_cols=81 Identities=20% Similarity=0.148 Sum_probs=73.2
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccc
Q 021177 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (316)
Q Consensus 103 ~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 178 (316)
++.......|.|.||.+.++.++|..+|++||.|-+|.|..++.+ |||||.|....+|+.|+++|+|..++|+
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR--- 83 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR--- 83 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccc---
Confidence 556677889999999999999999999999999999999998765 7999999999999999999999999994
Q ss_pred eEEEEEeec
Q 021177 179 SYVRVREYD 187 (316)
Q Consensus 179 ~~i~v~~~~ 187 (316)
+++|..++
T Consensus 84 -elrVq~ar 91 (256)
T KOG4207|consen 84 -ELRVQMAR 91 (256)
T ss_pred -eeeehhhh
Confidence 77776544
No 44
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.72 E-value=7.4e-16 Score=131.96 Aligned_cols=182 Identities=19% Similarity=0.249 Sum_probs=139.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEec--cCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLK--IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~--------i~i~--~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~ 73 (316)
.-++.|||.|||.++|.+++.++|++||-|.. |+|. ..|+.+|-|.|.|...+++..|+..|++..+.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 34667999999999999999999999997765 4442 3689999999999999999999999999999999
Q ss_pred eEEEEEcccCCCCCCCCCCCC----------------CCCCCCC--CCCCCCCCceEEEeCCCC----CCC-------HH
Q 021177 74 RLRVELAHGGRRHSSSMDRYS----------------SYSSGGS--RGVSRRSDYRVLVTGLPS----SAS-------WQ 124 (316)
Q Consensus 74 ~l~v~~a~~~~~~~~~~~~~~----------------~~~~~~~--~~~~~~~~~~l~V~nl~~----~~t-------~~ 124 (316)
.|.|+.|+......-...... ...-.+. ...-.....+|.+.|+-. ..+ ++
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 999999875432211111100 0000010 112234567888998743 122 45
Q ss_pred HHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeeccC
Q 021177 125 DLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (316)
Q Consensus 125 ~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (316)
+|.+.+.+||.|..+.+....+.|.+.|.|.+.++|..++..|+|..++| +.|....+++.
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg----Rql~A~i~DG~ 352 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDG----RQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecc----eEEEEEEeCCc
Confidence 77888999999999999988888999999999999999999999999999 46666665554
No 45
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=3.7e-17 Score=120.63 Aligned_cols=80 Identities=36% Similarity=0.537 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEe---ccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i---~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
..++|||||||+.-+||++|.+||+.||+|..|.| ..+..+.|||||+|...++|..|++.++|..++.++|.+.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 56899999999999999999999999999999999 335678999999999999999999999999999999999997
Q ss_pred ccC
Q 021177 81 HGG 83 (316)
Q Consensus 81 ~~~ 83 (316)
..-
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 643
No 46
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=9.7e-16 Score=126.85 Aligned_cols=171 Identities=21% Similarity=0.325 Sum_probs=134.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcc-cCC--ceEEEEE
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYN-FDG--YRLRVEL 79 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~-~~g--~~l~v~~ 79 (316)
+.++||||-|...-.|||++.+|..||+|.+|.+.. +|.+||+|||.|.+..+|..|+..|+|.. +.| ..|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 678999999999999999999999999999999964 78899999999999999999999999953 444 4699998
Q ss_pred cccCCCCC-----------------------------------------------CC-----------------------
Q 021177 80 AHGGRRHS-----------------------------------------------SS----------------------- 89 (316)
Q Consensus 80 a~~~~~~~-----------------------------------------------~~----------------------- 89 (316)
+...++.. ..
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 75322100 00
Q ss_pred -----CC--------------CCC-----CCCC-----------------C-----------------------------
Q 021177 90 -----MD--------------RYS-----SYSS-----------------G----------------------------- 99 (316)
Q Consensus 90 -----~~--------------~~~-----~~~~-----------------~----------------------------- 99 (316)
.. ... .+.. +
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 00 000 0000 0
Q ss_pred ---------CCCC---------CCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCH
Q 021177 100 ---------GSRG---------VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSY 157 (316)
Q Consensus 100 ---------~~~~---------~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~ 157 (316)
+... ..-+.++.|||-.||.+..+.+|-++|-.||.|...++..|+.+ .|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 0000 00126789999999999999999999999999999999887654 5999999999
Q ss_pred HHHHHHHHHhCCceeccc
Q 021177 158 DDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 158 ~~A~~A~~~l~g~~~~g~ 175 (316)
.+|+.|+..|||..|+=+
T Consensus 338 ~SaQaAIqAMNGFQIGMK 355 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMK 355 (371)
T ss_pred hhHHHHHHHhcchhhhhh
Confidence 999999999999999875
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.67 E-value=1.5e-16 Score=110.04 Aligned_cols=68 Identities=41% Similarity=0.748 Sum_probs=64.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEE
Q 021177 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (316)
Q Consensus 9 l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~ 76 (316)
|||+|||+++|+++|+++|++||.|..+.+.. ++..++||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999965 477899999999999999999999999999999885
No 48
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.66 E-value=6.6e-16 Score=130.24 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCC
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (316)
..++|||+|||+.+|+++|+++|+.||+|++|.|..++..+|||||+|.++++|+.|+. |||..|.|+.|.|.++....
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 36899999999999999999999999999999998777678999999999999999996 99999999999999987543
No 49
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.66 E-value=3.6e-15 Score=133.41 Aligned_cols=166 Identities=23% Similarity=0.296 Sum_probs=126.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~-~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
....|.+.+|||++|++||.++|+.| .|+.+.+.. +|++.|-|||||.++|++++|++ .|...+..+.|.|-.+...
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 45568899999999999999999999 688888866 59999999999999999999999 8888888899999876654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEE-EEEeec---CCCeEEEEEecCHHH
Q 021177 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRD---RGGMTGIVDYTSYDD 159 (316)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~-~~~~~~---~~~~~afV~f~~~~~ 159 (316)
..... .. .. +.. .....-.|.+.+||+.|+++||.++|.-.-.|.. +.++.+ +.++-|||+|++++.
T Consensus 87 e~d~~-~~-~~-----g~~--s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ 157 (510)
T KOG4211|consen 87 EADWV-MR-PG-----GPN--SSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQES 157 (510)
T ss_pred ccccc-cc-CC-----CCC--CCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHH
Confidence 32111 11 00 000 0124568999999999999999999997665555 334444 344789999999999
Q ss_pred HHHHHHHhCCceecccccceEEEEEee
Q 021177 160 MKYAIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 160 A~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
|++|+ .-|...|.. +.|.|..+
T Consensus 158 ae~Al-~rhre~iGh----RYIEvF~S 179 (510)
T KOG4211|consen 158 AEIAL-GRHRENIGH----RYIEVFRS 179 (510)
T ss_pred HHHHH-HHHHHhhcc----ceEEeehh
Confidence 99999 455556554 56666543
No 50
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.65 E-value=7.8e-16 Score=145.42 Aligned_cols=128 Identities=22% Similarity=0.268 Sum_probs=100.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~--G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
..++|||+||+.++|+++|+++|+.| |+|+.|.+. ++||||+|.+.++|++|++.|||..|+|+.|.|.|+++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 46789999999999999999999999 999999876 67999999999999999999999999999999999986
Q ss_pred CCCCCCCC-CCCCCCC-------CCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeE
Q 021177 83 GRRHSSSM-DRYSSYS-------SGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC 137 (316)
Q Consensus 83 ~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~ 137 (316)
........ .+..... .........+...+++++|+++.+++..+.++|..+|.|.
T Consensus 307 ~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 307 VDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred CCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 54321100 0000000 0001112233567999999999999999999999888754
No 51
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.65 E-value=8.6e-15 Score=127.92 Aligned_cols=177 Identities=18% Similarity=0.217 Sum_probs=142.8
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCC
Q 021177 6 SRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (316)
Q Consensus 6 ~~~l~V~nLp~~-~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (316)
+.+|.|.||... +|.+-|..+|.-||.|..|+|...+ +..|.|+|.+..+|..|+++|+|..+.|++|.|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 578999999765 9999999999999999999996544 3679999999999999999999999999999999999876
Q ss_pred CCCCCCCCC-----CCCCCCC----------CCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeE
Q 021177 85 RHSSSMDRY-----SSYSSGG----------SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT 149 (316)
Q Consensus 85 ~~~~~~~~~-----~~~~~~~----------~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~ 149 (316)
...+....+ ..|.... ...-.-++..++++.|+|..+++++|++.|..-|...+......+...+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~km 454 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKM 454 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcce
Confidence 544321111 1111111 0111235667999999999999999999999999998887777777779
Q ss_pred EEEEecCHHHHHHHHHHhCCceecccccceEEEEEeec
Q 021177 150 GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (316)
Q Consensus 150 afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (316)
+++++++.++|..|+-.+++..+.+. ..++|.+.+
T Consensus 455 al~q~~sveeA~~ali~~hnh~lgen---~hlRvSFSk 489 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGEN---HHLRVSFSK 489 (492)
T ss_pred eecccCChhHhhhhccccccccCCCC---ceEEEEeec
Confidence 99999999999999999999998763 366666654
No 52
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=3e-15 Score=139.14 Aligned_cols=170 Identities=21% Similarity=0.260 Sum_probs=132.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
...+.|+|+|||..+..++|..+|..||+|..+.|+..| .-++|+|.++.+|.+|+..|....+...++.+.|+...
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCccc---ceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 356889999999999999999999999999999776322 24999999999999999999999999999999987654
Q ss_pred CCC--CCCCCCC----CC-----------CCCC-CC--C-----C-----CCCCCCceEEEeCCCCCCCHHHHHHHHhhc
Q 021177 84 RRH--SSSMDRY----SS-----------YSSG-GS--R-----G-----VSRRSDYRVLVTGLPSSASWQDLKDHMRRA 133 (316)
Q Consensus 84 ~~~--~~~~~~~----~~-----------~~~~-~~--~-----~-----~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~ 133 (316)
... +...+.. .. ..+. .. . . ......++|||.||++.++.++|...|.++
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 332 1100000 00 0000 00 0 0 011123349999999999999999999999
Q ss_pred CCeEEEEEeecCCC-------eEEEEEecCHHHHHHHHHHhCCceecccc
Q 021177 134 GDVCFSQVFRDRGG-------MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (316)
Q Consensus 134 G~v~~~~~~~~~~~-------~~afV~f~~~~~A~~A~~~l~g~~~~g~~ 176 (316)
|.|..+.|...+.. |||||+|.+.++|+.|+..|+|..++|+.
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~ 589 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHK 589 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCce
Confidence 99999988866543 89999999999999999999999999973
No 53
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.60 E-value=4.6e-14 Score=124.33 Aligned_cols=170 Identities=25% Similarity=0.364 Sum_probs=130.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFY-KYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~-~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
-.+.+||+|||+++.+.+|++||. +.|+|+.|.+.. .++++|+|.|||+++|.+++|++.||...+.|++|+|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 356799999999999999999996 569999999965 58999999999999999999999999999999999998654
Q ss_pred cCCCCC-----------------------------------------CCCCCCC------CCC-------------CCC-
Q 021177 82 GGRRHS-----------------------------------------SSMDRYS------SYS-------------SGG- 100 (316)
Q Consensus 82 ~~~~~~-----------------------------------------~~~~~~~------~~~-------------~~~- 100 (316)
...... ...++.. .+. ...
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 311000 0000000 000 000
Q ss_pred ----CCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC---eEEEEEecCHHHHHHHHHHhCCceec
Q 021177 101 ----SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFR 173 (316)
Q Consensus 101 ----~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~ 173 (316)
...-..+-..++||.||.+.+....|.+.|.-.|.|..+.+--++.+ +++.++|.++-+|-+|+..+++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 00112233458999999999999999999999999999888766543 79999999999999999999875544
Q ss_pred c
Q 021177 174 N 174 (316)
Q Consensus 174 g 174 (316)
.
T Consensus 283 ~ 283 (608)
T KOG4212|consen 283 D 283 (608)
T ss_pred c
Confidence 3
No 54
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.60 E-value=5.8e-15 Score=122.55 Aligned_cols=78 Identities=21% Similarity=0.206 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
...||||+||++.+|+++|+++|+.||+|.+|.|..++..++||||+|.++++|+.|+. |||..|.|+.|.|..+...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCccc
Confidence 45899999999999999999999999999999998888888999999999999999996 9999999999999987643
No 55
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=7.3e-15 Score=104.46 Aligned_cols=81 Identities=36% Similarity=0.464 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
+-++-|||.|||.++|.+++.++|.+||.|.+|++=.+...+|.|||.|++..+|++|+++|+|..+.++.|.|-+..+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 45678999999999999999999999999999999767777999999999999999999999999999999999987654
Q ss_pred C
Q 021177 84 R 84 (316)
Q Consensus 84 ~ 84 (316)
.
T Consensus 96 ~ 96 (124)
T KOG0114|consen 96 D 96 (124)
T ss_pred H
Confidence 3
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=5e-15 Score=121.32 Aligned_cols=80 Identities=36% Similarity=0.587 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEec---cCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~---~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
+++.+|.|.||+.++++++|.+||.+||.|..+.|. .||.++|||||.|...++|.+|+..|||.-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 578899999999999999999999999999999994 48999999999999999999999999999999999999998
Q ss_pred ccC
Q 021177 81 HGG 83 (316)
Q Consensus 81 ~~~ 83 (316)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 863
No 57
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.58 E-value=4.3e-14 Score=123.83 Aligned_cols=141 Identities=27% Similarity=0.456 Sum_probs=109.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
..+|||+|||..+|+++|.++|..||.|..+.+.. ++.++|||||+|.++++|..|+..++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999954 579999999999999999999999999999999999999753
Q ss_pred -CCCCCCCCCC-CC--CCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC
Q 021177 83 -GRRHSSSMDR-YS--SYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG 146 (316)
Q Consensus 83 -~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~ 146 (316)
.......... .. .................+++.+++..++..++...|..+|.+....+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 1111111000 00 0000111223345567899999999999999999999999997666665444
No 58
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.58 E-value=5.8e-15 Score=102.12 Aligned_cols=68 Identities=32% Similarity=0.665 Sum_probs=61.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEE
Q 021177 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (316)
Q Consensus 9 l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~ 76 (316)
|||+|||+++|+++|.++|+.||.|..+.+.. ++..+++|||+|.++++|.+|++.++|..++|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999954 356789999999999999999999999999999874
No 59
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=3e-14 Score=130.59 Aligned_cols=172 Identities=21% Similarity=0.296 Sum_probs=127.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.....|||+|||..++++++.++...||.++...+.. ++.++||||.+|.++..+..|+..|||+.+.+++|.|+.+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 3456799999999999999999999999999998843 5789999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCC--CCCCCCC--CCCCCCCCCCceEEEeCC------CCCCC----HHHHHHHHhhcCCeEEEEEeec-C
Q 021177 81 HGGRRHSSSMDR--YSSYSSG--GSRGVSRRSDYRVLVTGL------PSSAS----WQDLKDHMRRAGDVCFSQVFRD-R 145 (316)
Q Consensus 81 ~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~l~V~nl------~~~~t----~~~l~~~f~~~G~v~~~~~~~~-~ 145 (316)
............ ......- ...+....+...|.+.|+ -.+.. .++++..+.+||.|..|.+..+ .
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 765433222111 0000000 001112222333333332 11111 2356677789999999999987 2
Q ss_pred ------CCeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 146 ------GGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 146 ------~~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
+.|..||+|.+.++++.|+++|+|.+|.|+
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 236899999999999999999999999994
No 60
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.55 E-value=2.8e-14 Score=128.30 Aligned_cols=80 Identities=31% Similarity=0.490 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCC--ceEEEEE
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g--~~l~v~~ 79 (316)
..++|||+|||+++|+++|+++|++||+|+.+.|+. +++++|||||+|.+.++|++|++.||+..+.| ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999953 67889999999999999999999999999876 6899999
Q ss_pred cccCC
Q 021177 80 AHGGR 84 (316)
Q Consensus 80 a~~~~ 84 (316)
+....
T Consensus 272 a~~~~ 276 (346)
T TIGR01659 272 AEEHG 276 (346)
T ss_pred CCccc
Confidence 87644
No 61
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1e-15 Score=119.87 Aligned_cols=81 Identities=31% Similarity=0.528 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEec---cCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~---~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.++.-|||||||..+||.||.-.|++||+|.+|.++ .||+++||||+.|++..+...|+..|||..|.|+.|.|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 356789999999999999999999999999999994 48999999999999999999999999999999999999986
Q ss_pred ccCC
Q 021177 81 HGGR 84 (316)
Q Consensus 81 ~~~~ 84 (316)
....
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 6544
No 62
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.54 E-value=3.7e-14 Score=123.99 Aligned_cols=180 Identities=17% Similarity=0.188 Sum_probs=136.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCC--cccCCceEEEEEc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELA 80 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g--~~~~g~~l~v~~a 80 (316)
..+++.|.++|||+++||+||.+++.+||+|..+.+... +.-|||||.++++|...+..+.. -.+.|++|.|+|+
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG---knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG---KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeecc---chhhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 358999999999999999999999999999999998642 45799999999999986654444 2457899999987
Q ss_pred ccCCCCCCCCCC-----------------CCCCCCC---CCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEE
Q 021177 81 HGGRRHSSSMDR-----------------YSSYSSG---GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ 140 (316)
Q Consensus 81 ~~~~~~~~~~~~-----------------~~~~~~~---~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~ 140 (316)
............ ..+.... ....+....--.++|+|+-..++-+.|..+|++||.|..|.
T Consensus 102 n~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIi 181 (492)
T KOG1190|consen 102 NHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKII 181 (492)
T ss_pred hHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEE
Confidence 644322211100 0000000 01111222344678899999999999999999999999999
Q ss_pred EeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeec
Q 021177 141 VFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (316)
Q Consensus 141 ~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (316)
.+...++.-|.|+|.++..|+.|...|+|..+.+. .+.++++...
T Consensus 182 TF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyng--cCtLrId~Sk 226 (492)
T KOG1190|consen 182 TFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNG--CCTLRIDFSK 226 (492)
T ss_pred EEecccchhhhhhccchhhHHHHHHhccCCcccCc--eeEEEeehhh
Confidence 99888888899999999999999999999998763 2566666543
No 63
>smart00362 RRM_2 RNA recognition motif.
Probab=99.53 E-value=6.9e-14 Score=96.37 Aligned_cols=71 Identities=44% Similarity=0.778 Sum_probs=65.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccC-CCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEE
Q 021177 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (316)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~-~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~ 78 (316)
+|||+|||..+++++|+++|++||+|..+.+..+ +.++|+|||+|.+.++|+.|+..++|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999998653 5678999999999999999999999999999998863
No 64
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=5e-14 Score=120.01 Aligned_cols=81 Identities=23% Similarity=0.443 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~-~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
.+..+.|+|.|||....+-||+.+|++||+|.+|.|+. +.-+||||||+|+++++|++|-+.|||..+.|++|.|..+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 35568899999999999999999999999999999976 45689999999999999999999999999999999999876
Q ss_pred cC
Q 021177 82 GG 83 (316)
Q Consensus 82 ~~ 83 (316)
..
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 54
No 65
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=1e-12 Score=113.52 Aligned_cols=75 Identities=24% Similarity=0.478 Sum_probs=68.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
..|||..+.++++++||+..|+.||+|..|++.. .+..+|||||||.+..+-..|+..||-..++|+.|.|.-+-
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 5799999999999999999999999999999944 35679999999999999999999999999999999998543
No 66
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=8.9e-14 Score=113.64 Aligned_cols=76 Identities=26% Similarity=0.423 Sum_probs=69.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
-++||||||+|.++.+.|++.|++||+|.+..++. ++++||||||+|.|.+.|.+|.+. .+-.|+|++-.|+++..
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 46899999999999999999999999999998854 789999999999999999999983 44578999999999876
No 67
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.51 E-value=7.9e-13 Score=104.29 Aligned_cols=80 Identities=25% Similarity=0.365 Sum_probs=71.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
....++|||+|||+.+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.||+..+.| +.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G----r~l 106 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG----RHI 106 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 45567999999999999999999999999999999998754 3799999999999999999999999999 578
Q ss_pred EEEeeccC
Q 021177 182 RVREYDSR 189 (316)
Q Consensus 182 ~v~~~~~~ 189 (316)
.|.....+
T Consensus 107 ~V~~a~~~ 114 (144)
T PLN03134 107 RVNPANDR 114 (144)
T ss_pred EEEeCCcC
Confidence 88776544
No 68
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=4.6e-14 Score=105.24 Aligned_cols=78 Identities=24% Similarity=0.465 Sum_probs=72.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCC
Q 021177 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (316)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (316)
-|||+++.+.+|+++|.+.|..||+|++|.+.. ||..+|||.|+|++.++|++|+..|||..+.|++|.|.|+....
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 489999999999999999999999999999954 78899999999999999999999999999999999999987654
Q ss_pred C
Q 021177 85 R 85 (316)
Q Consensus 85 ~ 85 (316)
+
T Consensus 154 p 154 (170)
T KOG0130|consen 154 P 154 (170)
T ss_pred C
Confidence 3
No 69
>PLN03213 repressor of silencing 3; Provisional
Probab=99.49 E-value=1.2e-13 Score=123.56 Aligned_cols=77 Identities=19% Similarity=0.334 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc-CCCCCcEEEEEECCH--HHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDY--RDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~-~~~~~g~aFVef~~~--e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
....+||||||++.+|+++|..+|..||.|..|.|+. +| +|||||+|... .++.+|+..|||..+.|+.|+|+.|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 4567899999999999999999999999999999975 34 99999999988 7899999999999999999999988
Q ss_pred cc
Q 021177 81 HG 82 (316)
Q Consensus 81 ~~ 82 (316)
++
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 63
No 70
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=3.7e-12 Score=107.47 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=68.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
.+-.||||.-|+.++++..|+..|.+||.|+.|.++.+.. .|||||+|++..++..|.+..+|.+|+|+ .|-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr----ri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR----RIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc----EEE
Confidence 5678999999999999999999999999999999998844 37999999999999999999999999995 555
Q ss_pred EEeec
Q 021177 183 VREYD 187 (316)
Q Consensus 183 v~~~~ 187 (316)
|+..+
T Consensus 175 VDvER 179 (335)
T KOG0113|consen 175 VDVER 179 (335)
T ss_pred EEecc
Confidence 55444
No 71
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=7.8e-14 Score=112.49 Aligned_cols=84 Identities=31% Similarity=0.551 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
...+|||||+|...||+.-|...|-+||.|.+|.++. +++.+|||||+|...|+|..|+..||+.++.|+.|.|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3578999999999999999999999999999999965 5788999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 021177 81 HGGRRHS 87 (316)
Q Consensus 81 ~~~~~~~ 87 (316)
++.+...
T Consensus 88 kP~kike 94 (298)
T KOG0111|consen 88 KPEKIKE 94 (298)
T ss_pred CCccccC
Confidence 9876443
No 72
>smart00360 RRM RNA recognition motif.
Probab=99.44 E-value=5.7e-13 Score=91.38 Aligned_cols=68 Identities=41% Similarity=0.710 Sum_probs=62.6
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEE
Q 021177 11 VGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (316)
Q Consensus 11 V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~ 78 (316)
|+|||..+++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999999954 46778999999999999999999999999999998873
No 73
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.43 E-value=9.8e-13 Score=91.05 Aligned_cols=72 Identities=40% Similarity=0.739 Sum_probs=66.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCC--CCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP--RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~--~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
+|+|+|||+.+++++|.++|+.||.|..+.+.... .+.++|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999996532 5689999999999999999999999999999998864
No 74
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.42 E-value=9.2e-13 Score=86.76 Aligned_cols=56 Identities=36% Similarity=0.622 Sum_probs=50.9
Q ss_pred HHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 23 VEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 23 L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
|.++|++||+|..+.+.... +++|||+|.+.++|.+|++.|||..+.|++|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999996543 599999999999999999999999999999999985
No 75
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.40 E-value=9.6e-13 Score=120.11 Aligned_cols=78 Identities=33% Similarity=0.651 Sum_probs=74.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
++|||||||+++++++|.++|+..|.|.+++++. +|+++|||||+|.++++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999964 6899999999999999999999999999999999999998754
Q ss_pred C
Q 021177 84 R 84 (316)
Q Consensus 84 ~ 84 (316)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 76
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.7e-13 Score=117.90 Aligned_cols=80 Identities=26% Similarity=0.395 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEec---cCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~---~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
-|.++|||..|.|-+|+++|..+|+.||+|..|.++ .||.+-.||||||.+.+++++|+-.|++..|+++.|+|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 378899999999999999999999999999999995 47888889999999999999999999999999999999997
Q ss_pred ccC
Q 021177 81 HGG 83 (316)
Q Consensus 81 ~~~ 83 (316)
..-
T Consensus 317 QSV 319 (479)
T KOG0415|consen 317 QSV 319 (479)
T ss_pred hhh
Confidence 653
No 77
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=3.1e-12 Score=100.70 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=72.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC-CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEee
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
...+|||+|||.++.+.+|+++|.+||.|..|.+...+. ..||||+|+++.+|+.|+..-||..++| ..++|+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg----~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG----CRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCc----ceEEEEec
Confidence 357999999999999999999999999999999987665 3699999999999999999999999999 59999998
Q ss_pred ccCC
Q 021177 187 DSRR 190 (316)
Q Consensus 187 ~~~r 190 (316)
+..+
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 8775
No 78
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.38 E-value=4.9e-12 Score=87.11 Aligned_cols=64 Identities=20% Similarity=0.379 Sum_probs=59.2
Q ss_pred EEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC---CeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 112 l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
|||+|||..+++++|.++|.+||.+..+.+..+.. .++|||+|.+.++|+.|++.+||..+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 79999999999999999999999999999998632 26999999999999999999999999984
No 79
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=2.2e-12 Score=114.33 Aligned_cols=77 Identities=29% Similarity=0.511 Sum_probs=71.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCCC
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 85 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (316)
-+.|||.||+.++|++.|.++|++||+|+.|+.+ +-||||.|.+.++|.+||+.|||.+|+|..|.|.+|++...
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 4679999999999999999999999999999877 56999999999999999999999999999999999998654
Q ss_pred CC
Q 021177 86 HS 87 (316)
Q Consensus 86 ~~ 87 (316)
.+
T Consensus 334 ~k 335 (506)
T KOG0117|consen 334 KK 335 (506)
T ss_pred hc
Confidence 43
No 80
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.34 E-value=1.1e-10 Score=101.48 Aligned_cols=179 Identities=15% Similarity=0.170 Sum_probs=136.4
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 4 RSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 4 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
-+.+++.|.+|... +.-+-|.++|..||.|+.|++++|. .|.|.||+.|....+.|+++||+..+.|.+|.|.+++.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 46788999999765 7778899999999999999998764 67999999999999999999999999999999999886
Q ss_pred CCCCCCC---------------CCCCCCCCCCCC--CCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCe-EEEEEeec
Q 021177 83 GRRHSSS---------------MDRYSSYSSGGS--RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRD 144 (316)
Q Consensus 83 ~~~~~~~---------------~~~~~~~~~~~~--~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v-~~~~~~~~ 144 (316)
.-..+.. ..+...+..... -.....+...|+.-|.|..+|++.|.++|..-+.. ..+.+...
T Consensus 363 ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~ 442 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPL 442 (494)
T ss_pred cccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecc
Confidence 5432221 011111111111 12234577899999999999999999999976643 44555543
Q ss_pred CCC--eEEEEEecCHHHHHHHHHHhCCceecccccceEEEEE
Q 021177 145 RGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (316)
Q Consensus 145 ~~~--~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~ 184 (316)
+.. .-+.+||++.++|..|+..+|...+.++...-+..+.
T Consensus 443 kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilK 484 (494)
T KOG1456|consen 443 KSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILK 484 (494)
T ss_pred cccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeee
Confidence 332 3689999999999999999999999887655444443
No 81
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.30 E-value=3.9e-12 Score=106.91 Aligned_cols=77 Identities=38% Similarity=0.669 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
.++++|+||||.+.+|.+||+..|++||.|.++.|. ++|+||.|.-.++|..|+..|||.+|.|++++|+++...
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 578999999999999999999999999999999998 789999999999999999999999999999999998765
Q ss_pred CC
Q 021177 84 RR 85 (316)
Q Consensus 84 ~~ 85 (316)
-.
T Consensus 151 lr 152 (346)
T KOG0109|consen 151 LR 152 (346)
T ss_pred cc
Confidence 43
No 82
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=8.9e-11 Score=106.27 Aligned_cols=167 Identities=21% Similarity=0.249 Sum_probs=116.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc-----CCCCCc---EEEEEECCHHHHHHHHHhCCCcccCCceEE
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-----PPRPPG---YAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~-----~~~~~g---~aFVef~~~e~A~~A~~~l~g~~~~g~~l~ 76 (316)
=+++||||+||++++|++|...|..||.+..=+-.. -..++| |+|+.|+++.++..-+... ......+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC---~~~~~~~y 334 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC---SEGEGNYY 334 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH---hhcccceE
Confidence 367899999999999999999999999776432211 113466 9999999999988766433 22444444
Q ss_pred EEEcccCCCCCCCCCCCCCCCCC---CCCCCCCCCCceEEEeCCCCCCCHHHHHHHHh-hcCCeEEEEEeecCCC----e
Q 021177 77 VELAHGGRRHSSSMDRYSSYSSG---GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMR-RAGDVCFSQVFRDRGG----M 148 (316)
Q Consensus 77 v~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~-~~G~v~~~~~~~~~~~----~ 148 (316)
+..+......+....++...... .....+.++..||||++||..++.++|..+|. -||.|.++-|-.|+.- |
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 44433333222111111111110 11334566788999999999999999999999 7999999999988543 5
Q ss_pred EEEEEecCHHHHHHHHHH----hCCceecc
Q 021177 149 TGIVDYTSYDDMKYAIRK----LDRSEFRN 174 (316)
Q Consensus 149 ~afV~f~~~~~A~~A~~~----l~g~~~~g 174 (316)
-|-|+|.+..+-.+|+.+ ++..++..
T Consensus 415 aGRVtFsnqqsYi~AIsarFvql~h~d~~K 444 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISARFVQLDHTDIDK 444 (520)
T ss_pred cceeeecccHHHHHHHhhheEEEeccccce
Confidence 688999999999999865 45555544
No 83
>smart00361 RRM_1 RNA recognition motif.
Probab=99.25 E-value=2.8e-11 Score=83.49 Aligned_cols=58 Identities=26% Similarity=0.457 Sum_probs=51.7
Q ss_pred HHHHHHHhh----cCCCeeEEE-ec---cC--CCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEE
Q 021177 20 MREVEDLFY----KYGPIVDID-LK---IP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (316)
Q Consensus 20 ~~~L~~~F~----~~G~V~~i~-i~---~~--~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v 77 (316)
+++|+++|+ +||.|..+. +. .+ ++++|||||+|.+.++|.+|+..|||..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999998 999999985 32 23 788999999999999999999999999999999976
No 84
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.24 E-value=4.7e-10 Score=99.39 Aligned_cols=74 Identities=22% Similarity=0.342 Sum_probs=63.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEec--cCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK--IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~--~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
...+||+||...+..+.|.+.|.-.|+|+.|.+- +.+.++|||.|+|.++-.|-.|+..|++..+..++.++..
T Consensus 215 ~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 215 HNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred cceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 4579999999999999999999999999999884 3578899999999999999999998887666666555554
No 85
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=3.6e-11 Score=102.78 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=71.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC--eEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~--~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
.....+|+|.|+|....+.||..+|.+||.|.+++|+.+..+ ||+||+|++.+||++|.++|||..+.| ++|.|
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEG----RkIEV 168 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEG----RKIEV 168 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeec----eEEEE
Confidence 345679999999999999999999999999999999987654 899999999999999999999999999 57877
Q ss_pred Eeecc
Q 021177 184 REYDS 188 (316)
Q Consensus 184 ~~~~~ 188 (316)
..+..
T Consensus 169 n~ATa 173 (376)
T KOG0125|consen 169 NNATA 173 (376)
T ss_pred eccch
Confidence 76554
No 86
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.23 E-value=7.6e-11 Score=99.79 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=67.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC-CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeec
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (316)
..+|||+|||+.+++++|+++|..||.|..+.+..+.. .+||||+|++.++|+.|+ .|||..+.| +.+.|....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~g----r~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVD----QSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCC----ceEEEEecc
Confidence 46999999999999999999999999999999998864 579999999999999999 599999999 477777754
Q ss_pred c
Q 021177 188 S 188 (316)
Q Consensus 188 ~ 188 (316)
.
T Consensus 79 ~ 79 (260)
T PLN03120 79 D 79 (260)
T ss_pred C
Confidence 3
No 87
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=4.7e-11 Score=89.29 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=69.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
..++.|||.++...+++++|.+.|..||+|.+++++.+..+ |||.|+|++.++|+.|++++||..+.|. .+.
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q----~v~ 145 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ----NVS 145 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC----cee
Confidence 45789999999999999999999999999999999998776 5999999999999999999999999994 666
Q ss_pred EEee
Q 021177 183 VREY 186 (316)
Q Consensus 183 v~~~ 186 (316)
|+..
T Consensus 146 VDw~ 149 (170)
T KOG0130|consen 146 VDWC 149 (170)
T ss_pred EEEE
Confidence 6653
No 88
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.22 E-value=3.4e-10 Score=98.42 Aligned_cols=168 Identities=15% Similarity=0.196 Sum_probs=128.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhC--CCcccCCceEEEEEcc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR--DGYNFDGYRLRVELAH 81 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l--~g~~~~g~~l~v~~a~ 81 (316)
.++-+|.|.+|-..+++.+|.+-++.||.|..+.+... +..|.|+|++.+.|+.++..- +...+.|+.-.+.++.
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~---~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySt 105 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH---KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYST 105 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc---cceeeeeeccccchhhheehhccCcccccCchhhcccch
Confidence 46778999999999999999999999999999988532 457999999999999998622 4456678887777764
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCceEE--EeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHH
Q 021177 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVL--VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDD 159 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~ 159 (316)
........ ..+..+...|. |-|--+.+|.+.|..++...|+|..|.|++. ++-.|+|||++.+.
T Consensus 106 sq~i~R~g-------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~ 171 (494)
T KOG1456|consen 106 SQCIERPG-------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEV 171 (494)
T ss_pred hhhhccCC-------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHH
Confidence 43321110 00111223333 4555677999999999999999999999887 55579999999999
Q ss_pred HHHHHHHhCCceecccccceEEEEEeeccCC
Q 021177 160 MKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (316)
Q Consensus 160 A~~A~~~l~g~~~~g~~~~~~i~v~~~~~~r 190 (316)
|++|...|||..|-.. -+.++++.+++.+
T Consensus 172 AqrAk~alNGADIYsG--CCTLKIeyAkP~r 200 (494)
T KOG1456|consen 172 AQRAKAALNGADIYSG--CCTLKIEYAKPTR 200 (494)
T ss_pred HHHHHhhccccccccc--ceeEEEEecCcce
Confidence 9999999999988642 2567777776643
No 89
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=1.6e-11 Score=99.29 Aligned_cols=141 Identities=18% Similarity=0.259 Sum_probs=115.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
...+||||+|+...|+++-|.++|-+-|+|..|.|+. ++..+ ||||+|.++.++.-|++.|||..+.+..|++.+-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 5679999999999999999999999999999999965 55666 99999999999999999999999999999998754
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC---eEEEEEecCHH
Q 021177 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYD 158 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~f~~~~ 158 (316)
+..-. -|...++++.+.+.|...|.+..+.+..+..+ .++|+.+....
T Consensus 86 G~sha-----------------------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~ 136 (267)
T KOG4454|consen 86 GNSHA-----------------------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLC 136 (267)
T ss_pred CCCcc-----------------------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhh
Confidence 32210 14456777788888889998888888766542 47889888888
Q ss_pred HHHHHHHHhCCceecc
Q 021177 159 DMKYAIRKLDRSEFRN 174 (316)
Q Consensus 159 ~A~~A~~~l~g~~~~g 174 (316)
....++...++....-
T Consensus 137 ~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 137 AVPFALDLYQGLELFQ 152 (267)
T ss_pred cCcHHhhhhcccCcCC
Confidence 8888887777766543
No 90
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.18 E-value=2.4e-10 Score=78.78 Aligned_cols=64 Identities=25% Similarity=0.425 Sum_probs=57.6
Q ss_pred EEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC---CeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 112 l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
|+|+|||+.+++++|.++|..+|.|..+.+..++. .++|||+|.+.++|..|+..+++..+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 68999999999999999999999999999998764 36999999999999999999999999984
No 91
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=2.5e-10 Score=94.02 Aligned_cols=80 Identities=26% Similarity=0.295 Sum_probs=72.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~ 180 (316)
.....++|.|.||+.++++.+|+++|.+||.|..+++..++.+ |||||.|.+.++|++|++.|||.-+++ .-
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~----LI 260 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN----LI 260 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce----EE
Confidence 4456789999999999999999999999999999999999876 599999999999999999999999887 67
Q ss_pred EEEEeecc
Q 021177 181 VRVREYDS 188 (316)
Q Consensus 181 i~v~~~~~ 188 (316)
++|+.+++
T Consensus 261 LrvEwskP 268 (270)
T KOG0122|consen 261 LRVEWSKP 268 (270)
T ss_pred EEEEecCC
Confidence 88887765
No 92
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.17 E-value=9.2e-11 Score=110.48 Aligned_cols=78 Identities=29% Similarity=0.510 Sum_probs=72.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCCC
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 85 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (316)
++|||||+|+.++++.||.++|+.||+|..|.|+. ++|+|||.+..-.+|.+|+..|.+..+.++.|+|.|+.....
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~---~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP---PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc---CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 68999999999999999999999999999999974 489999999999999999999999999999999999987654
Q ss_pred C
Q 021177 86 H 86 (316)
Q Consensus 86 ~ 86 (316)
.
T Consensus 498 k 498 (894)
T KOG0132|consen 498 K 498 (894)
T ss_pred c
Confidence 3
No 93
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.15 E-value=1.4e-10 Score=101.07 Aligned_cols=176 Identities=19% Similarity=0.203 Sum_probs=118.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcC----CCeeEEEe-cc-CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKY----GPIVDIDL-KI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~----G~V~~i~i-~~-~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
--|...+||.++|+.|+.++|.+- |.++.|.+ .. +|+..|-|||.|..+++|+.|+. -|...++-+.|.+-.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHHH
Confidence 346788999999999999999632 23444444 33 78999999999999999999997 4544555444443322
Q ss_pred ccCC-------CCCCCC--CCCCCCCC--CCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEE---EEEeecCC
Q 021177 81 HGGR-------RHSSSM--DRYSSYSS--GGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF---SQVFRDRG 146 (316)
Q Consensus 81 ~~~~-------~~~~~~--~~~~~~~~--~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~---~~~~~~~~ 146 (316)
.... ...... ....+... .....+.......|.+.+||+.++.++|-++|..|...+. +++..+..
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 1100 000000 00000111 1112233445678999999999999999999998875443 66666544
Q ss_pred C---eEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeec
Q 021177 147 G---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (316)
Q Consensus 147 ~---~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (316)
+ |-|||+|.+.++|..|..+.++....+ ++|.+....
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~----RYiEvfp~S 360 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHKKLMKS----RYIEVFPCS 360 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHHhhccc----ceEEEeecc
Confidence 3 789999999999999998888887755 577776543
No 94
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=1.5e-10 Score=85.87 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=69.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
...++|||+||+.-+++++|.++|.++|+|..|.+-.+..+ |||||+|.+.++|+.|+..++|..++. +.|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd----r~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD----RPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc----ccee
Confidence 34679999999999999999999999999999888776554 699999999999999999999999998 5788
Q ss_pred EEeecc
Q 021177 183 VREYDS 188 (316)
Q Consensus 183 v~~~~~ 188 (316)
++.+.+
T Consensus 110 ~D~D~G 115 (153)
T KOG0121|consen 110 IDWDAG 115 (153)
T ss_pred eecccc
Confidence 877654
No 95
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=4.6e-10 Score=80.19 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=69.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC-eEEEEEecCHHHHHHHHHHhCCceecccccceEEEEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~-~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~ 184 (316)
+.-...|||.|||..+|.+++-++|.+||.|..+.+-..+++ |.|||.|++..+|.+|++.|+|..+.+ +.+.+-
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~----ryl~vl 90 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN----RYLVVL 90 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC----ceEEEE
Confidence 344678999999999999999999999999999999877665 799999999999999999999999998 577766
Q ss_pred eecc
Q 021177 185 EYDS 188 (316)
Q Consensus 185 ~~~~ 188 (316)
...+
T Consensus 91 yyq~ 94 (124)
T KOG0114|consen 91 YYQP 94 (124)
T ss_pred ecCH
Confidence 5443
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.13 E-value=4.7e-10 Score=93.54 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=67.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC-eEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEee
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~-~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
.+.+|+|+||++.+++++|+++|..||+|.++.+..+... ++|||+|++.++|+.|+ .|+|..+.+ ..|.+..+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d----~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVD----QRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCC----ceEEEEeC
Confidence 3579999999999999999999999999999999988654 69999999999999999 899999998 46777765
Q ss_pred cc
Q 021177 187 DS 188 (316)
Q Consensus 187 ~~ 188 (316)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 43
No 97
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=5.3e-11 Score=113.72 Aligned_cols=158 Identities=20% Similarity=0.264 Sum_probs=132.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccC--CCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~--~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
..++|||+|||+..+++.+|+..|..+|.|..|.|..+ +....||||.|.+...+..|...+.+..|....+.+.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 46789999999999999999999999999999999653 4456699999999999999999899888766666655543
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHH
Q 021177 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMK 161 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~ 161 (316)
.. ....+.+++++|...+....|...|..||.|..|.+-.... |++|.|++...|+
T Consensus 450 ~k----------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~--yayi~yes~~~aq 505 (975)
T KOG0112|consen 450 PK----------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP--YAYIQYESPPAAQ 505 (975)
T ss_pred cc----------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc--ceeeecccCccch
Confidence 21 12356899999999999999999999999999988876544 9999999999999
Q ss_pred HHHHHhCCceecccccceEEEEEeec
Q 021177 162 YAIRKLDRSEFRNAFSRSYVRVREYD 187 (316)
Q Consensus 162 ~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (316)
.|+..|-|..+++... .++|..+.
T Consensus 506 ~a~~~~rgap~G~P~~--r~rvdla~ 529 (975)
T KOG0112|consen 506 AATHDMRGAPLGGPPR--RLRVDLAS 529 (975)
T ss_pred hhHHHHhcCcCCCCCc--cccccccc
Confidence 9999999999988643 36665544
No 98
>PLN03213 repressor of silencing 3; Provisional
Probab=99.10 E-value=4.2e-10 Score=101.14 Aligned_cols=77 Identities=17% Similarity=0.287 Sum_probs=70.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCH--HHHHHHHHHhCCceecccccceEEEEEe
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSY--DDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~--~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
...+|||+||++.+++++|...|..||.|..+.|++....|||||+|... .++.+|+..|||..+.| +.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG----R~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG----GRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC----ceeEEee
Confidence 35799999999999999999999999999999999777778999999987 78999999999999999 5898888
Q ss_pred ecc
Q 021177 186 YDS 188 (316)
Q Consensus 186 ~~~ 188 (316)
++.
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 765
No 99
>smart00362 RRM_2 RNA recognition motif.
Probab=99.08 E-value=1.3e-09 Score=74.65 Aligned_cols=65 Identities=22% Similarity=0.356 Sum_probs=59.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecC--CCeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR--GGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 111 ~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~--~~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
+|+|.|||..+++++|.++|.+||.+..+.+..+. ..++|||+|.+.++|+.|+..+++..+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~ 67 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGR 67 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCE
Confidence 48999999999999999999999999999888765 336999999999999999999999999884
No 100
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=7.7e-10 Score=101.88 Aligned_cols=169 Identities=21% Similarity=0.328 Sum_probs=130.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcC-----------C-CeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCccc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKY-----------G-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~-----------G-~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~ 70 (316)
+.....++|+++|+.++++.+..+|..- | .|..+.+. ..++||||+|.+.++|..|+. +++..+
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n---~~~nfa~ie~~s~~~at~~~~-~~~~~f 247 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN---LEKNFAFIEFRSISEATEAMA-LDGIIF 247 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec---ccccceeEEecCCCchhhhhc-ccchhh
Confidence 3456779999999999999999999653 2 46666664 347899999999999999998 999999
Q ss_pred CCceEEEEEcccCCCCCCCCCC---CCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC-
Q 021177 71 DGYRLRVELAHGGRRHSSSMDR---YSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG- 146 (316)
Q Consensus 71 ~g~~l~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~- 146 (316)
.|..+++.-.......+..... ...+...............++|++||...++.++.|+...||.+....++.+..
T Consensus 248 ~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~ 327 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT 327 (500)
T ss_pred CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc
Confidence 9999887654433322221111 011112222233345567999999999999999999999999999888887755
Q ss_pred ---CeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 147 ---GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 147 ---~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
.+|||.+|.+...+..|+..|||..+.++
T Consensus 328 g~skg~af~ey~dpsvtd~A~agLnGm~lgd~ 359 (500)
T KOG0120|consen 328 GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK 359 (500)
T ss_pred ccccceeeeeeeCCcchhhhhcccchhhhcCc
Confidence 36999999999999999999999999984
No 101
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.05 E-value=6.5e-10 Score=89.51 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcC-CCeeEEEe---ccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKY-GPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~-G~V~~i~i---~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
....+||+.+|.-+-+.+|..+|.++ |.|..+++ ..||.++|||||||++++.|+-|.+.||+..|.|+.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999999 78888888 459999999999999999999999999999999999999986
Q ss_pred ccC
Q 021177 81 HGG 83 (316)
Q Consensus 81 ~~~ 83 (316)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 544
No 102
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.02 E-value=6.2e-10 Score=87.78 Aligned_cols=80 Identities=20% Similarity=0.408 Sum_probs=71.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeE----EEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVD----IDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~----i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
+.+|||+||.+.+++..|.++|+.||.+.. +....|+.++|||||.|.+.|.+.+|+..|||..+..++|.|.++.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 467999999999999999999999998876 2224578999999999999999999999999999999999999988
Q ss_pred cCCC
Q 021177 82 GGRR 85 (316)
Q Consensus 82 ~~~~ 85 (316)
....
T Consensus 176 k~~~ 179 (203)
T KOG0131|consen 176 KKDT 179 (203)
T ss_pred ecCC
Confidence 6554
No 103
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=8.2e-10 Score=95.42 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=70.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCe----EEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~----~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
.++...|||..|.+-++.++|+-+|+.||.|..|.++.+..+| ||||+|++.+++++|.-+|++..|+. +.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD----rRI 311 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD----RRI 311 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc----ceE
Confidence 4678899999999999999999999999999999999998775 99999999999999999999999998 466
Q ss_pred EEEeec
Q 021177 182 RVREYD 187 (316)
Q Consensus 182 ~v~~~~ 187 (316)
.|.+..
T Consensus 312 HVDFSQ 317 (479)
T KOG0415|consen 312 HVDFSQ 317 (479)
T ss_pred Eeehhh
Confidence 666533
No 104
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=4.9e-10 Score=93.33 Aligned_cols=81 Identities=22% Similarity=0.440 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
-+.|+|||.-||...++.||.+.|-+||.|.+.++.. |..+|-||||.|.++.+|+.|+..|||..|.=+.|+|.+.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 4679999999999999999999999999999999843 6789999999999999999999999999999999999987
Q ss_pred ccCC
Q 021177 81 HGGR 84 (316)
Q Consensus 81 ~~~~ 84 (316)
.++.
T Consensus 363 RPkd 366 (371)
T KOG0146|consen 363 RPKD 366 (371)
T ss_pred Cccc
Confidence 6554
No 105
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=1.3e-09 Score=94.20 Aligned_cols=76 Identities=30% Similarity=0.566 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHH-hCCCcccCCceEEEEEccc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR-GRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~-~l~g~~~~g~~l~v~~a~~ 82 (316)
+..+||||+||-..+++.+|++.|.+||+|+.|.+... +++|||+|.+.+.|+.|.. .+|...|+|+.|.|.|..+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 34679999999999999999999999999999999642 6799999999999999875 4566788999999999887
No 106
>smart00360 RRM RNA recognition motif.
Probab=98.96 E-value=4.9e-09 Score=71.44 Aligned_cols=62 Identities=21% Similarity=0.388 Sum_probs=56.6
Q ss_pred EeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 114 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 114 V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
|+|||..+++++|.++|.+||.|..+.+..++. .++|||+|.+.++|..|+..+++..+.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~ 66 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGR 66 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCc
Confidence 578999999999999999999999999988765 46999999999999999999999999874
No 107
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=1.7e-09 Score=88.76 Aligned_cols=72 Identities=14% Similarity=0.208 Sum_probs=60.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
-++|||++|+|.+..+.|...|++||+|+.+.++.|+.+ ||+||+|.+.++|.+|++..| -.|+|+...+.+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnl 87 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNL 87 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccch
Confidence 468999999999999999999999999999999988765 699999999999999996543 345664333333
No 108
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.94 E-value=1.3e-08 Score=69.98 Aligned_cols=65 Identities=22% Similarity=0.395 Sum_probs=60.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC---CeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 111 ~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
+|+|.|||..+++++|.++|..+|.+..+.+..++. .++|||+|.+.++|..|++.+++..+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~ 68 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGR 68 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 478999999999999999999999999999998764 57999999999999999999999998884
No 109
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.91 E-value=4.5e-09 Score=96.10 Aligned_cols=81 Identities=25% Similarity=0.403 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCC---CCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP---RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~---~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
-.++|||.+|...+...+|+.||++||+|...+++... -.+-||||++.+.++|.++|.+|+.+.++|+.|.|+-++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 35789999999999999999999999999999996532 335699999999999999999999999999999999987
Q ss_pred cCCC
Q 021177 82 GGRR 85 (316)
Q Consensus 82 ~~~~ 85 (316)
....
T Consensus 484 NEp~ 487 (940)
T KOG4661|consen 484 NEPG 487 (940)
T ss_pred cCcc
Confidence 6543
No 110
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.88 E-value=1.5e-08 Score=66.45 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=47.8
Q ss_pred HHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 126 LKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 126 l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
|.++|++||+|..+.+..+. +++|||+|.+.++|..|+..|||..+.|+ .+.+..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~----~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGR----PLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTE----EEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCc----EEEEEE
Confidence 67899999999999998776 56999999999999999999999999994 676654
No 111
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.80 E-value=2.2e-08 Score=84.60 Aligned_cols=79 Identities=25% Similarity=0.442 Sum_probs=71.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
+.+|+|.|||..|+++||.++|..||.++.+.+.. .|.+.|.|=|.|...++|..|++.+||..++|+.+++......
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 46799999999999999999999999999888855 6888999999999999999999999999999999999886654
Q ss_pred C
Q 021177 84 R 84 (316)
Q Consensus 84 ~ 84 (316)
.
T Consensus 163 ~ 163 (243)
T KOG0533|consen 163 S 163 (243)
T ss_pred c
Confidence 3
No 112
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=1e-09 Score=86.41 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=69.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEEEEE
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~ 184 (316)
..-|||+|||.+.|+.||--.|++||+|.+|.++++..+ ||||+.|+++.+..-|+..|||..+.| +.|+|+
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g----RtirVD 110 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG----RTIRVD 110 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc----eeEEee
Confidence 568999999999999999999999999999999998765 699999999999999999999999999 588887
Q ss_pred eec
Q 021177 185 EYD 187 (316)
Q Consensus 185 ~~~ 187 (316)
.-.
T Consensus 111 Hv~ 113 (219)
T KOG0126|consen 111 HVS 113 (219)
T ss_pred ecc
Confidence 644
No 113
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=4.2e-09 Score=96.38 Aligned_cols=165 Identities=19% Similarity=0.162 Sum_probs=103.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
-++++|+|-|||..|++++|..+|+.||+|+.|++ +....|.+||+|.|..+|+.|++.|++..+.|+.|+.......
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 46789999999999999999999999999999665 3445889999999999999999999999999999982111100
Q ss_pred CCCCCCCCC--CCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHH
Q 021177 84 RRHSSSMDR--YSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMK 161 (316)
Q Consensus 84 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~ 161 (316)
..... ... ...+.......++-....--.++.|++..+..-++..+..+|.+..-...... .--+++|.+..++.
T Consensus 151 ~~~~~-~~~~~~~~~~~p~a~s~pgg~~~~~~~g~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~--hq~~~~~~~~~s~a 227 (549)
T KOG4660|consen 151 AMGLQ-SGTSFLNHFGSPLANSPPGGWPRGQLFGMLSPTRSSILLEHISSVDGSSPGRETPLLN--HQRFVEFADNRSYA 227 (549)
T ss_pred cchhc-ccchhhhhccchhhcCCCCCCcCCcceeeeccchhhhhhhcchhccCccccccccchh--hhhhhhhccccchh
Confidence 00000 000 00000000001111111111223388888887777777778777652111111 14678888888885
Q ss_pred HHHHHhCCceecc
Q 021177 162 YAIRKLDRSEFRN 174 (316)
Q Consensus 162 ~A~~~l~g~~~~g 174 (316)
.+...+ |..+.+
T Consensus 228 ~~~~~~-G~~~s~ 239 (549)
T KOG4660|consen 228 FSEPRG-GFLISN 239 (549)
T ss_pred hcccCC-ceecCC
Confidence 555422 444444
No 114
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=6.8e-09 Score=84.23 Aligned_cols=83 Identities=20% Similarity=0.211 Sum_probs=73.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
...+|||++|..++++.-|...|-.||.|..+.++.+-. .+|+||+|+..+||..|+..||+.++.| +.|+|
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G----rtirV 84 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG----RTIRV 84 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc----eeEEE
Confidence 357999999999999999999999999999999987743 3799999999999999999999999999 58999
Q ss_pred EeeccCCCcCC
Q 021177 184 REYDSRRSYSR 194 (316)
Q Consensus 184 ~~~~~~r~~~r 194 (316)
..+.+.+-..+
T Consensus 85 N~AkP~kikeg 95 (298)
T KOG0111|consen 85 NLAKPEKIKEG 95 (298)
T ss_pred eecCCccccCC
Confidence 98887654433
No 115
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.78 E-value=1.5e-08 Score=85.83 Aligned_cols=80 Identities=25% Similarity=0.420 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.+.+||+|+...+|.+++...|+.||.|..+.|+. .++++|||||+|.+.+.+..|+. |||..+.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 4678999999999999999999999999999888854 46899999999999999999999 9999999999999997
Q ss_pred ccCC
Q 021177 81 HGGR 84 (316)
Q Consensus 81 ~~~~ 84 (316)
.-..
T Consensus 178 r~~~ 181 (231)
T KOG4209|consen 178 RTNV 181 (231)
T ss_pred eeec
Confidence 7653
No 116
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.77 E-value=8.4e-10 Score=97.41 Aligned_cols=142 Identities=24% Similarity=0.377 Sum_probs=115.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCc-ccCCceEEEEEcccC
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY-NFDGYRLRVELAHGG 83 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~--G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~-~~~g~~l~v~~a~~~ 83 (316)
..+|+|||.+.++.++|..+|... |--..+.|. .||+||.+.+..+|.+|++.++|. .+.|+.+.|++.-++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 468999999999999999999754 222222222 689999999999999999999994 778999999987654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-ecCCCeEEEEEecCHHHHHH
Q 021177 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF-RDRGGMTGIVDYTSYDDMKY 162 (316)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~-~~~~~~~afV~f~~~~~A~~ 162 (316)
.. ....+.|.|+|+...++.|..+...||.++.|... .+..+...-|+|...+.+..
T Consensus 77 kq----------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ 134 (584)
T KOG2193|consen 77 KQ----------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQ 134 (584)
T ss_pred HH----------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 42 13368899999999999999999999999998654 44444455688999999999
Q ss_pred HHHHhCCceeccc
Q 021177 163 AIRKLDRSEFRNA 175 (316)
Q Consensus 163 A~~~l~g~~~~g~ 175 (316)
|+.+++|..+.+.
T Consensus 135 ai~kl~g~Q~en~ 147 (584)
T KOG2193|consen 135 AIHKLNGPQLENQ 147 (584)
T ss_pred HHHhhcchHhhhh
Confidence 9999999998773
No 117
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.73 E-value=2.9e-07 Score=83.34 Aligned_cols=167 Identities=21% Similarity=0.247 Sum_probs=112.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVD-IDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~-i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
..-+|.+.+||+.||++||.++|+..-.|.+ |.++. .+.+.|-|||+|++++.|++|+. -|...|.-+.|.|-.+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 5568999999999999999999999866665 33332 46788999999999999999998 67777777788876543
Q ss_pred cCCC---------C---CCCCCC-----C---------------------------------------CCCCCC--CCC-
Q 021177 82 GGRR---------H---SSSMDR-----Y---------------------------------------SSYSSG--GSR- 102 (316)
Q Consensus 82 ~~~~---------~---~~~~~~-----~---------------------------------------~~~~~~--~~~- 102 (316)
.... . +..-+. . ..+... ...
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 1100 0 000000 0 000000 000
Q ss_pred ---CCC-----------CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC---CeEEEEEecCHHHHHHHHH
Q 021177 103 ---GVS-----------RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIR 165 (316)
Q Consensus 103 ---~~~-----------~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~~~afV~f~~~~~A~~A~~ 165 (316)
++. ......++..+||...+..++..+|...-.+ .++|...+. ++-|+|+|.+.++|..|+
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Am- 338 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAM- 338 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhh-
Confidence 000 0112467778999999999999999976555 455554443 468999999999999999
Q ss_pred HhCCceecc
Q 021177 166 KLDRSEFRN 174 (316)
Q Consensus 166 ~l~g~~~~g 174 (316)
.-++..+..
T Consensus 339 skd~anm~h 347 (510)
T KOG4211|consen 339 GKDGANMGH 347 (510)
T ss_pred ccCCcccCc
Confidence 455666554
No 118
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.70 E-value=9.7e-08 Score=83.35 Aligned_cols=75 Identities=24% Similarity=0.388 Sum_probs=67.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEE
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~ 184 (316)
..+|||+|||..+++++|.++|.+||.+..+.+..+.. .|+|||+|.+.++|..|+..+++..+.| ..+.+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~----~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG----RPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC----ceeEee
Confidence 58999999999999999999999999999999988752 3799999999999999999999999999 477777
Q ss_pred eec
Q 021177 185 EYD 187 (316)
Q Consensus 185 ~~~ 187 (316)
...
T Consensus 191 ~~~ 193 (306)
T COG0724 191 KAQ 193 (306)
T ss_pred ccc
Confidence 654
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=1.8e-09 Score=103.04 Aligned_cols=133 Identities=23% Similarity=0.310 Sum_probs=111.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEec---cCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~---~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
+..++||.||++.+.+.+|...|..+|.+..+.+. ..+..+|+||++|..+++|.+|+...+++ +.|+
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~gK-------- 736 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC-FFGK-------- 736 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh-hhhh--------
Confidence 34578999999999999999999999988888773 36788999999999999999999944443 3331
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC---CeEEEEEecCHH
Q 021177 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYD 158 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~~~afV~f~~~~ 158 (316)
..++|.|.|...|.++++.++.++|.+....++.... .|.++|.|.+..
T Consensus 737 ----------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea 788 (881)
T KOG0128|consen 737 ----------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEA 788 (881)
T ss_pred ----------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcc
Confidence 2678899999999999999999999999987776544 378999999999
Q ss_pred HHHHHHHHhCCceecc
Q 021177 159 DMKYAIRKLDRSEFRN 174 (316)
Q Consensus 159 ~A~~A~~~l~g~~~~g 174 (316)
+|..++..++...+..
T Consensus 789 ~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 789 DASRKVASVDVAGKRE 804 (881)
T ss_pred hhhhhcccchhhhhhh
Confidence 9999998877766654
No 120
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.68 E-value=4.3e-08 Score=89.38 Aligned_cols=77 Identities=29% Similarity=0.557 Sum_probs=66.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
+..+|||+|||.++++++|.++|..||.|+...|.. .++...||||+|.+.++++.|+. -+-..++|++|.|+--+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEecc
Confidence 345599999999999999999999999999988832 24444899999999999999998 66888999999999755
Q ss_pred c
Q 021177 82 G 82 (316)
Q Consensus 82 ~ 82 (316)
.
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 3
No 121
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.67 E-value=4e-08 Score=92.18 Aligned_cols=78 Identities=24% Similarity=0.447 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccC------CCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~------~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
.++|||+||++.++++.|...|..||+|..++|++. .....+|||-|.+-.+|++|++.|+|..+.+..+++.|
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 467999999999999999999999999999999652 35577999999999999999999999999999999999
Q ss_pred cccC
Q 021177 80 AHGG 83 (316)
Q Consensus 80 a~~~ 83 (316)
++.-
T Consensus 254 gk~V 257 (877)
T KOG0151|consen 254 GKAV 257 (877)
T ss_pred cccc
Confidence 8643
No 122
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.67 E-value=4.4e-08 Score=86.11 Aligned_cols=83 Identities=24% Similarity=0.515 Sum_probs=73.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
..++||||+||.+++++++++.|++||.|..+.++. +..++||+||.|.+++.+++++. ..-+.|.|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 356899999999999999999999999999988855 46789999999999999999997 88899999999999988
Q ss_pred cCCCCCC
Q 021177 82 GGRRHSS 88 (316)
Q Consensus 82 ~~~~~~~ 88 (316)
+......
T Consensus 175 pk~~~~~ 181 (311)
T KOG4205|consen 175 PKEVMQS 181 (311)
T ss_pred chhhccc
Confidence 7664443
No 123
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.65 E-value=6.6e-08 Score=88.73 Aligned_cols=79 Identities=25% Similarity=0.335 Sum_probs=72.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 110 ~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
..+||+|+|+++++++|.++|...|.|..++++.|+.+ ||||++|.+.++|..|++.|||.++.| +.+++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g----r~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG----RKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC----ceEEeec
Confidence 79999999999999999999999999999999998765 599999999999999999999999999 6888888
Q ss_pred eccCCCc
Q 021177 186 YDSRRSY 192 (316)
Q Consensus 186 ~~~~r~~ 192 (316)
......+
T Consensus 95 ~~~~~~~ 101 (435)
T KOG0108|consen 95 ASNRKNA 101 (435)
T ss_pred ccccchh
Confidence 7665433
No 124
>smart00361 RRM_1 RNA recognition motif.
Probab=98.64 E-value=2e-07 Score=64.06 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=44.9
Q ss_pred HHHHHHHHh----hcCCeEEEE-EeecC------CCeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 123 WQDLKDHMR----RAGDVCFSQ-VFRDR------GGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 123 ~~~l~~~f~----~~G~v~~~~-~~~~~------~~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
+++|.++|. +||.|..+. +..++ ..|+|||+|.+.++|.+|+..|||..+.|+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr 65 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGR 65 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 467888888 999999985 54432 247999999999999999999999999994
No 125
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.62 E-value=2.1e-07 Score=64.22 Aligned_cols=71 Identities=27% Similarity=0.420 Sum_probs=49.9
Q ss_pred CeEEEcCCCCCCCHHH----HHHHhhcCC-CeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 7 RTLYVGNLPGDTRMRE----VEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~----L~~~F~~~G-~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
..|+|.|||.+.+... |++|+..|| +|..|. .+.|+|.|.+++.|..|.+.|+|-.+.|.+|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4699999999988876 566777885 888762 5789999999999999999999999999999999975
Q ss_pred cCC
Q 021177 82 GGR 84 (316)
Q Consensus 82 ~~~ 84 (316)
...
T Consensus 76 ~~r 78 (90)
T PF11608_consen 76 KNR 78 (90)
T ss_dssp -S-
T ss_pred Ccc
Confidence 443
No 126
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.55 E-value=5.1e-07 Score=65.45 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=63.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccC----CceEEE
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD----GYRLRV 77 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~--G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~----g~~l~v 77 (316)
+||.|.|||...|.++|.+++... |...-+.++. ++...|||||-|.+++.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998754 6666677754 4678999999999999999999999998885 556777
Q ss_pred EEccc
Q 021177 78 ELAHG 82 (316)
Q Consensus 78 ~~a~~ 82 (316)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77764
No 127
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.55 E-value=1.3e-07 Score=82.90 Aligned_cols=170 Identities=20% Similarity=0.241 Sum_probs=127.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCC-cccCCceEEEEEc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVELA 80 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g-~~~~g~~l~v~~a 80 (316)
...++|++++..++.+.++..++..+|.+....+.. ....++++++.|+..+.+..|+. +.+ ....+..+...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCccc
Confidence 367899999999999999999999999877776632 45678999999999999999998 555 4666666555544
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEE-EeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEec
Q 021177 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVL-VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYT 155 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~ 155 (316)
........ ............+++ |.+++..++.++|..+|..+|.|..+.+...+.. ++++|.|.
T Consensus 166 ~~~~~~~~----------n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~ 235 (285)
T KOG4210|consen 166 TRRGLRPK----------NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFS 235 (285)
T ss_pred cccccccc----------chhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhh
Confidence 43221000 011111112233455 9999999999999999999999999999987765 58999999
Q ss_pred CHHHHHHHHHHhCCceecccccceEEEEEeeccCC
Q 021177 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (316)
Q Consensus 156 ~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~~r 190 (316)
....+..++.. +...+.+ ..+.++...+++
T Consensus 236 ~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 236 AGNSKKLALND-QTRSIGG----RPLRLEEDEPRP 265 (285)
T ss_pred hchhHHHHhhc-ccCcccC----cccccccCCCCc
Confidence 99999999977 7777777 466666665554
No 128
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.47 E-value=2.8e-06 Score=74.67 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=108.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEE---eccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDID---LKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~---i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
+++..|...+||+..++.+|-.+|...-...... +...+.-.|.|.|.|.++|.-+-|++ -+.+.+.++.|.|.-+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 5667788999999999999999997653222221 12345667899999999999999998 6778888899988765
Q ss_pred ccCCCCCCCCCCCCCCCC-CCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhc----CCeEEEEEe---ecCCCeEEEE
Q 021177 81 HGGRRHSSSMDRYSSYSS-GGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRA----GDVCFSQVF---RDRGGMTGIV 152 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~----G~v~~~~~~---~~~~~~~afV 152 (316)
.......- ..+.. ....-.+......|...+||.++++.++.++|..- |..+.+-++ .++.+|-|||
T Consensus 137 ~ge~f~~i-----agg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFv 211 (508)
T KOG1365|consen 137 TGEEFLKI-----AGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFV 211 (508)
T ss_pred CchhheEe-----cCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEE
Confidence 54332111 11111 11112223344567778999999999999999722 233333333 3445689999
Q ss_pred EecCHHHHHHHHHH
Q 021177 153 DYTSYDDMKYAIRK 166 (316)
Q Consensus 153 ~f~~~~~A~~A~~~ 166 (316)
.|...++|+.|+.+
T Consensus 212 lfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 212 LFACEEDAQFALRK 225 (508)
T ss_pred EecCHHHHHHHHHH
Confidence 99999999999954
No 129
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.39 E-value=3.1e-08 Score=86.90 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=54.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccC
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~ 71 (316)
.+||+|++|+..+...++-++|+.+|+|....+.. +-...||.|+|....+...|+. ++|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as-k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS-KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc-cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 37899999999999999999999999999877742 2235588899999999999998 7887765
No 130
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.37 E-value=4.3e-07 Score=75.55 Aligned_cols=75 Identities=19% Similarity=0.352 Sum_probs=66.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEe---ccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i---~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..-.||+|.|...++++.|-..|.+|-.....++ ..|++++||+||.|.++.++..|+..|||..++.++|++.-
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 4567999999999999999999999987666666 44899999999999999999999999999999999987654
No 131
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.35 E-value=3.8e-07 Score=74.46 Aligned_cols=66 Identities=24% Similarity=0.389 Sum_probs=55.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCccc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~ 70 (316)
....||||.||.++|||++|+.+|+.|-...-++|...+- ...||++|++.+.|..||..|+|..+
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g-~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG-MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC-cceEeecHHHHHHHHHHHHHhhccee
Confidence 4556899999999999999999999998777777743221 34899999999999999999999655
No 132
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.30 E-value=1e-06 Score=73.65 Aligned_cols=63 Identities=22% Similarity=0.337 Sum_probs=53.3
Q ss_pred HHHHHHhh-cCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 21 REVEDLFY-KYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 21 ~~L~~~F~-~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
++|...|+ +||+|+.+++-. ..+..|.+||.|..+++|++|++.|||..|.|++|..++....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 45555666 999999998732 3467899999999999999999999999999999999986643
No 133
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.28 E-value=1.3e-06 Score=72.39 Aligned_cols=71 Identities=21% Similarity=0.284 Sum_probs=63.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeecc
Q 021177 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (316)
Q Consensus 110 ~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (316)
..+||++||+.+.+.+|+++|..||.+..+.+... |+||+|++..+|..|+..+|+..+.|. .+.++...+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g----f~fv~fed~rda~Dav~~l~~~~l~~e----~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNG----FGFVEFEDPRDADDAVHDLDGKELCGE----RLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecc----cceeccCchhhhhcccchhcCceecce----eeeeecccc
Confidence 37899999999999999999999999999988864 899999999999999999999999994 366666654
No 134
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.26 E-value=4.5e-06 Score=68.68 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=65.8
Q ss_pred CceEEEeCCCCCCCHHHHHH----HHhhcCCeEEEEEeecCC-CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 109 DYRVLVTGLPSSASWQDLKD----HMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~----~f~~~G~v~~~~~~~~~~-~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
..+|||.||+..+..++|+. +|++||.|..|.....+. .|-|||.|.+.+.|-.|+.+|+|..+-|+ ++++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK----~mri 84 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGK----PMRI 84 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCc----hhhe
Confidence 34999999999999998877 999999999998886544 47999999999999999999999999996 6666
Q ss_pred Eeecc
Q 021177 184 REYDS 188 (316)
Q Consensus 184 ~~~~~ 188 (316)
..+..
T Consensus 85 qyA~s 89 (221)
T KOG4206|consen 85 QYAKS 89 (221)
T ss_pred ecccC
Confidence 66544
No 135
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.26 E-value=2.5e-06 Score=78.55 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=67.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
....|||.+|...+...+|+.+|.+||.|+-+.++.+... .|+||+|.+.++|.++|+.||..++.| +-|.|
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG----rmISV 479 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG----RMISV 479 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc----eeeee
Confidence 3468999999999999999999999999999999877432 599999999999999999999999999 47777
Q ss_pred Eeecc
Q 021177 184 REYDS 188 (316)
Q Consensus 184 ~~~~~ 188 (316)
+..+.
T Consensus 480 EkaKN 484 (940)
T KOG4661|consen 480 EKAKN 484 (940)
T ss_pred eeccc
Confidence 76553
No 136
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.24 E-value=3.7e-06 Score=80.14 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=65.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeec
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (316)
..+||||++|+..+++.||..+|+.||+|..|.++... ++|||.+....+|.+|+.+|.+..+.++ .|++..+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~~k----~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVADK----TIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhcccccce----eeEEeeec
Confidence 45799999999999999999999999999999888665 5999999999999999999999999884 56565554
Q ss_pred c
Q 021177 188 S 188 (316)
Q Consensus 188 ~ 188 (316)
+
T Consensus 494 g 494 (894)
T KOG0132|consen 494 G 494 (894)
T ss_pred c
Confidence 4
No 137
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.18 E-value=1e-06 Score=71.83 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=67.0
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC--eEEEEEecCHHHHHHHHHHhCCceecccccce
Q 021177 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (316)
Q Consensus 104 ~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~--~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~ 179 (316)
++.+...+|+|+|+...++++-|.|+|-+.|.|..+.|..+..+ .||||+|++.....-|++-+||..+.+....+
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhc
Confidence 34566789999999999999999999999999999999876554 59999999999999999999999998865444
No 138
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.17 E-value=9.4e-06 Score=76.51 Aligned_cols=175 Identities=12% Similarity=0.020 Sum_probs=119.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
+.+.+-+.+++.+....+++++|... .|....|.. .+-..|-++|+|....++.+|++ -|.+.+-.+.+.+..+-
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 34556678999999999999999764 455444432 23337899999999999999998 67777778888877543
Q ss_pred cCCCCCC--------------CCCCCCCCC-----CCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEE-EEE
Q 021177 82 GGRRHSS--------------SMDRYSSYS-----SGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQV 141 (316)
Q Consensus 82 ~~~~~~~--------------~~~~~~~~~-----~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~-~~~ 141 (316)
....... .+.+..... .+.....+......|||..||..++..++.++|.....|++ |.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 2211100 000100000 00111234456789999999999999999999999888887 666
Q ss_pred eecCCC---eEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 142 FRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 142 ~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
...+.+ +.|||+|...+++..|...-+...+.. +.|+|..
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~----r~irv~s 510 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH----RIIRVDS 510 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCc----eEEEeec
Confidence 655443 589999999999988885555444443 5677654
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.16 E-value=7e-06 Score=69.55 Aligned_cols=74 Identities=24% Similarity=0.314 Sum_probs=65.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC---eEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
..+|+|.|||..+..+||+++|.+||.+..+-+..++.+ |.|-|.|...+||..|++++|+..++|. .+.+..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~----~mk~~~ 158 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGR----PMKIEI 158 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCc----eeeeEE
Confidence 468999999999999999999999999999888888776 7999999999999999999999999996 455544
Q ss_pred e
Q 021177 186 Y 186 (316)
Q Consensus 186 ~ 186 (316)
.
T Consensus 159 i 159 (243)
T KOG0533|consen 159 I 159 (243)
T ss_pred e
Confidence 3
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.16 E-value=2.8e-05 Score=71.25 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=62.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecC----CCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~----~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
...+|||.|||.+++..+|+++|.+||.|....|.... ...||||+|++.++++.|+.+- -..+++ .++.|
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~----~kl~V 361 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG----RKLNV 361 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCC----eeEEE
Confidence 44569999999999999999999999999987666532 2269999999999999999665 555555 58888
Q ss_pred EeeccC
Q 021177 184 REYDSR 189 (316)
Q Consensus 184 ~~~~~~ 189 (316)
++.+..
T Consensus 362 eek~~~ 367 (419)
T KOG0116|consen 362 EEKRPG 367 (419)
T ss_pred Eecccc
Confidence 887664
No 141
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.16 E-value=9.9e-06 Score=70.52 Aligned_cols=76 Identities=17% Similarity=0.276 Sum_probs=63.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHh-CCceecccccceEEEEEe
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL-DRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l-~g~~~~g~~~~~~i~v~~ 185 (316)
..-.+|||++|...+++.+|.++|.+||+|..+.+..... +|||+|.+.+.|+.|.++. |...++| .++.+..
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G----~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVING----FRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecc----eEEEEEe
Confidence 3457999999999999999999999999999999887654 9999999999999988775 5556667 4677765
Q ss_pred ecc
Q 021177 186 YDS 188 (316)
Q Consensus 186 ~~~ 188 (316)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 444
No 142
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.06 E-value=3.6e-06 Score=73.68 Aligned_cols=80 Identities=29% Similarity=0.403 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEe---ccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~--------i~i---~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~ 73 (316)
..-+|||.+||..+++++|..+|.+||.|.. |+| +.|+.+|+-|.|.|.++..|+.|+..+++..|.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4568999999999999999999999997764 233 34789999999999999999999999999999999
Q ss_pred eEEEEEcccCC
Q 021177 74 RLRVELAHGGR 84 (316)
Q Consensus 74 ~l~v~~a~~~~ 84 (316)
+|+|.++....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998876443
No 143
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.00 E-value=2.5e-05 Score=63.41 Aligned_cols=73 Identities=15% Similarity=0.158 Sum_probs=61.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhc-CCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccce
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRA-GDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~-G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~ 179 (316)
.....++|..+|..+.+.++...|.++ |.+....+.++..+ |||||+|++.+.|.-|.+.||++.+.++...+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 345578899999999999999999988 67777777665443 69999999999999999999999999975444
No 144
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.95 E-value=2.2e-05 Score=58.32 Aligned_cols=70 Identities=16% Similarity=0.314 Sum_probs=43.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCC-----cccCCceEEEEE
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG-----YNFDGYRLRVEL 79 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g-----~~~~g~~l~v~~ 79 (316)
..|+|.+++..++-++|+++|+.||.|..|.+... -..|||-|.+++.|++|+..+.- ..+.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 46899999999999999999999999999998642 34799999999999999875533 344555555544
No 145
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.91 E-value=2.7e-05 Score=65.04 Aligned_cols=152 Identities=18% Similarity=0.221 Sum_probs=106.3
Q ss_pred EEcCCCCCCCHHH-H--HHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCC
Q 021177 10 YVGNLPGDTRMRE-V--EDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (316)
Q Consensus 10 ~V~nLp~~~t~~~-L--~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (316)
+++|+-..+..+- | ...|+.|-.....++.. .+.-.+++|+.|.....-.++...-++..+.-..+. .+....
T Consensus 100 ~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR--~a~gts 177 (290)
T KOG0226|consen 100 FQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVR--LAAGTS 177 (290)
T ss_pred cccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCccee--eccccc
Confidence 4555555555444 2 55666666555555533 345678999999988887777776666666555533 322221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHH
Q 021177 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDM 160 (316)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A 160 (316)
...... .--.....+||-+.|..+++.+.|...|.+|-......+.++..+ ||+||.|.+..++
T Consensus 178 wedPsl------------~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~ 245 (290)
T KOG0226|consen 178 WEDPSL------------AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADY 245 (290)
T ss_pred cCCccc------------ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHH
Confidence 111000 001133568999999999999999999999998888888877543 6999999999999
Q ss_pred HHHHHHhCCceeccc
Q 021177 161 KYAIRKLDRSEFRNA 175 (316)
Q Consensus 161 ~~A~~~l~g~~~~g~ 175 (316)
..|+..|||..++.+
T Consensus 246 ~rAmrem~gkyVgsr 260 (290)
T KOG0226|consen 246 VRAMREMNGKYVGSR 260 (290)
T ss_pred HHHHHhhcccccccc
Confidence 999999999999874
No 146
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=1.1e-05 Score=74.41 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=60.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccc
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 178 (316)
+..+|+|-|||..++.++|..+|..||+|..+..-.... +.+||+|.+..+|+.|+++|++.++.|+..+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~-~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR-GIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC-ceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 456999999999999999999999999999865544333 5799999999999999999999999996443
No 147
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.89 E-value=3.8e-05 Score=49.39 Aligned_cols=53 Identities=30% Similarity=0.509 Sum_probs=43.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHH
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~ 62 (316)
++.|-|.+.+++..+. +...|..||+|..+.+.. ...+.||.|.+..+|++|+
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~---~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE---STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC---CCcEEEEEECCHHHHHhhC
Confidence 3678899999887755 555888999999998862 2569999999999999985
No 148
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.84 E-value=1e-05 Score=67.62 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=58.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccC-----------CCCCc----EEEEEECCHHHHHHHHHhCCCccc
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-----------PRPPG----YAFLEFEDYRDAEDAIRGRDGYNF 70 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~-----------~~~~g----~aFVef~~~e~A~~A~~~l~g~~~ 70 (316)
.-.||+++||+.+...-|+++|+.||+|-.|.+... +...+ -|.|||.+...|+.....|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999999999999321 11111 288999999999999999999999
Q ss_pred CCce
Q 021177 71 DGYR 74 (316)
Q Consensus 71 ~g~~ 74 (316)
.|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9875
No 149
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.84 E-value=0.00016 Score=63.05 Aligned_cols=77 Identities=25% Similarity=0.455 Sum_probs=66.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEE--------EEEeecCCC---eEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~--------~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
.-.+.|||.|||.++|.+++.++|.++|.|.. |.+..+..+ |-|.+.|...++..-|+..|++..+.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg- 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG- 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC-
Confidence 34567999999999999999999999998764 677776655 689999999999999999999999998
Q ss_pred ccceEEEEEeec
Q 021177 176 FSRSYVRVREYD 187 (316)
Q Consensus 176 ~~~~~i~v~~~~ 187 (316)
..|+|+.+.
T Consensus 211 ---~~~rVerAk 219 (382)
T KOG1548|consen 211 ---KKLRVERAK 219 (382)
T ss_pred ---cEEEEehhh
Confidence 488888754
No 150
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.84 E-value=1.3e-05 Score=70.30 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=71.7
Q ss_pred CCCCCeEE-EcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEE
Q 021177 3 SRSSRTLY-VGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (316)
Q Consensus 3 ~~~~~~l~-V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~ 78 (316)
..++.++| |+||+.++++++|+..|..+|.|..+.++. ++.++|||||+|.+...+..|+.. +...+.|.++.+.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 45666777 999999999999999999999999999954 678999999999999999999986 8899999999998
Q ss_pred EcccCC
Q 021177 79 LAHGGR 84 (316)
Q Consensus 79 ~a~~~~ 84 (316)
......
T Consensus 260 ~~~~~~ 265 (285)
T KOG4210|consen 260 EDEPRP 265 (285)
T ss_pred cCCCCc
Confidence 876543
No 151
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.76 E-value=2.4e-05 Score=68.12 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=63.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G--~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
...+|||||.|.+|++||.+.+...| .|.++++.. .|++||||.|.......+++.++.|....|+|+.-.|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 34689999999999999999999888 556666633 589999999999999999999999999999998766653
No 152
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.76 E-value=8.3e-05 Score=64.57 Aligned_cols=75 Identities=24% Similarity=0.392 Sum_probs=60.9
Q ss_pred CeEEEcCCCCCCCHHHH------HHHhhcCCCeeEEEecc-CC---CCCc-E-EEEEECCHHHHHHHHHhCCCcccCCce
Q 021177 7 RTLYVGNLPGDTRMREV------EDLFYKYGPIVDIDLKI-PP---RPPG-Y-AFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L------~~~F~~~G~V~~i~i~~-~~---~~~g-~-aFVef~~~e~A~~A~~~l~g~~~~g~~ 74 (316)
.-+||-+||+.+-.+++ .++|.+||+|..|.+.. +. ...+ + .||.|.+.|+|..|+...+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 34799999999888883 46899999999999943 21 1111 2 499999999999999999999999999
Q ss_pred EEEEEcc
Q 021177 75 LRVELAH 81 (316)
Q Consensus 75 l~v~~a~ 81 (316)
|+..+..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9998754
No 153
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.73 E-value=0.00018 Score=52.64 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=54.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEec----------cCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK----------IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~----------~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~ 73 (316)
...+.|.|-+.|+. ..+.|.+.|++||.|.+..-. ..........|.|.++.+|.+||. .||..+.|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 34677899999988 667888999999999887510 011235689999999999999998 999999987
Q ss_pred eE-EEEEcc
Q 021177 74 RL-RVELAH 81 (316)
Q Consensus 74 ~l-~v~~a~ 81 (316)
.+ -|.+..
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 54 466653
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.72 E-value=8.9e-05 Score=55.01 Aligned_cols=59 Identities=22% Similarity=0.405 Sum_probs=39.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCc
Q 021177 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS 170 (316)
Q Consensus 110 ~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~ 170 (316)
..|++.+++..++.++|++.|.+||.|.+|.+..... .|+|.|.+.+.|+.|+.++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 4688899999999999999999999999998887544 7999999999999999887544
No 155
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.71 E-value=0.00051 Score=49.90 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=55.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhh--cCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 110 YRVLVTGLPSSASWQDLKDHMRR--AGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 110 ~~l~V~nl~~~~t~~~l~~~f~~--~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
+||.|.|+|...+.++|.+++.. .|....+.++.|-. .|||||.|.+++.|..-.+.++|..+..-
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 58999999999999999888875 35666677776643 48999999999999999999999998753
No 156
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.69 E-value=0.00018 Score=68.38 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=66.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC-------CeEEEEEecCHHHHHHHHHHhCCceecccccce
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-------GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~-------~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~ 179 (316)
+..+.+||+||++.++++.|...|..||.+..+.++.... ..++||.|-+..||+.|++.|+|..+.+.
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~---- 247 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY---- 247 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee----
Confidence 4567899999999999999999999999999999987643 24999999999999999999999999883
Q ss_pred EEEEEeec
Q 021177 180 YVRVREYD 187 (316)
Q Consensus 180 ~i~v~~~~ 187 (316)
++++...+
T Consensus 248 e~K~gWgk 255 (877)
T KOG0151|consen 248 EMKLGWGK 255 (877)
T ss_pred eeeecccc
Confidence 66655543
No 157
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00013 Score=67.53 Aligned_cols=75 Identities=27% Similarity=0.425 Sum_probs=60.6
Q ss_pred CCeEEEcCCCCCCCH------HHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccC-CceEE
Q 021177 6 SRTLYVGNLPGDTRM------REVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLR 76 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~------~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~-g~~l~ 76 (316)
...|+|.|+|---.. .-|..+|+++|+|..+.++. .|..+||.|++|.+..+|+.|++.|||..++ .+.+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 457899999864222 23667999999999999974 4668999999999999999999999998886 55677
Q ss_pred EEEc
Q 021177 77 VELA 80 (316)
Q Consensus 77 v~~a 80 (316)
|..-
T Consensus 138 v~~f 141 (698)
T KOG2314|consen 138 VRLF 141 (698)
T ss_pred eehh
Confidence 6643
No 158
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.57 E-value=0.00021 Score=67.65 Aligned_cols=76 Identities=21% Similarity=0.373 Sum_probs=65.0
Q ss_pred CCCC-eEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEe--ccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 4 RSSR-TLYVGNLPGDTRMREVEDLFYKYGPIVD-IDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 4 ~~~~-~l~V~nLp~~~t~~~L~~~F~~~G~V~~-i~i--~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
.+.+ +|-+.|+|.+++.+||.++|.-|-.+-+ |.+ ..+|++.|-|.|.|++.++|..|...|++..|..+.+.+.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3444 7889999999999999999999965443 333 44789999999999999999999999999999999988754
No 159
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.54 E-value=0.00015 Score=60.84 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=44.4
Q ss_pred HHHHHHHh-hcCCeEEEEEeecCCC---eEEEEEecCHHHHHHHHHHhCCceecccccc
Q 021177 124 QDLKDHMR-RAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (316)
Q Consensus 124 ~~l~~~f~-~~G~v~~~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 178 (316)
++|...|. +||+|+.+.+-.+-.. |-++|.|...++|++|++.||+..+.|+.+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ 141 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIH 141 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcce
Confidence 45555555 9999999877665443 5799999999999999999999999996443
No 160
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.50 E-value=9e-05 Score=68.91 Aligned_cols=77 Identities=10% Similarity=0.194 Sum_probs=66.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCccc---CCceEEEEE
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFY-KYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---DGYRLRVEL 79 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~---~g~~l~v~~ 79 (316)
.+++.|||.||-.-.|.-+|+.|+. .+|.|++.+|-. -+..|||.|.+.++|.+....|||..+ +++.|.+.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk---IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK---IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHH---hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 5788999999999999999999999 778898887721 166899999999999999999999887 577888888
Q ss_pred cccC
Q 021177 80 AHGG 83 (316)
Q Consensus 80 a~~~ 83 (316)
....
T Consensus 519 ~~~d 522 (718)
T KOG2416|consen 519 VRAD 522 (718)
T ss_pred cchh
Confidence 7643
No 161
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.46 E-value=0.00037 Score=59.23 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=65.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
.....++|+|+...++.++++.+|+.||.+..+.+..+... +|+||+|.+.+.++.|+. ||+..+.|. .+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~----~i~ 173 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGP----AIE 173 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccc----cce
Confidence 34568999999999999999999999999998888876544 599999999999999997 999999995 555
Q ss_pred EEeecc
Q 021177 183 VREYDS 188 (316)
Q Consensus 183 v~~~~~ 188 (316)
+...+-
T Consensus 174 vt~~r~ 179 (231)
T KOG4209|consen 174 VTLKRT 179 (231)
T ss_pred eeeeee
Confidence 555443
No 162
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.43 E-value=0.001 Score=46.31 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=45.6
Q ss_pred ceEEEeCCCCCCCHHH----HHHHHhhcC-CeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEE
Q 021177 110 YRVLVTGLPSSASWQD----LKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (316)
Q Consensus 110 ~~l~V~nl~~~~t~~~----l~~~f~~~G-~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~ 184 (316)
..|+|.|||...+... |++++..+| .|..+. ++.|.|.|.+++.|..|.+.|+|..+.| .+|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG----~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFG----NKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSS----S--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhccccccc----ceEEEE
Confidence 4789999999988765 556666665 555552 2479999999999999999999999999 478877
Q ss_pred eecc
Q 021177 185 EYDS 188 (316)
Q Consensus 185 ~~~~ 188 (316)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 7543
No 163
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00063 Score=62.60 Aligned_cols=61 Identities=21% Similarity=0.377 Sum_probs=55.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEeccC---CCCCcEEEEEECCHHHHHHHHH
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFY-KYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIR 63 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~V~~i~i~~~---~~~~g~aFVef~~~e~A~~A~~ 63 (316)
-+|.+|||||+||.-+|.++|-.+|+ -||.|..+-|-.+ +-++|-|=|.|.+..+-.+||.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 47899999999999999999999999 8999999999544 5689999999999999999987
No 164
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.41 E-value=0.00014 Score=65.15 Aligned_cols=63 Identities=29% Similarity=0.383 Sum_probs=54.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccC--------CCC--------CcEEEEEECCHHHHHHHHHhCCC
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--------PRP--------PGYAFLEFEDYRDAEDAIRGRDG 67 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~--------~~~--------~g~aFVef~~~e~A~~A~~~l~g 67 (316)
++++|.+-|||.+-.-+.|.+||..+|.|+.|.|-.. +.+ +-+|+|||.+.+.|.+|.+.|+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 7899999999999999999999999999999999332 222 45799999999999999997755
No 165
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.27 E-value=0.00076 Score=56.70 Aligned_cols=102 Identities=27% Similarity=0.241 Sum_probs=82.2
Q ss_pred HHHHHHHhCCCcccCCceEEEEEcccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCe
Q 021177 57 DAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDV 136 (316)
Q Consensus 57 ~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v 136 (316)
-|..|...|++....|+.|.|.|+.. ..|+|.||...++.+.+.+.|..||.|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~---------------------------a~l~V~nl~~~~sndll~~~f~~fg~~ 58 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH---------------------------AELYVVNLMQGASNDLLEQAFRRFGPI 58 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc---------------------------ceEEEEecchhhhhHHHHHhhhhcCcc
Confidence 45667777899999999999999874 389999999999999999999999999
Q ss_pred EEEEEeecCC---CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 137 CFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 137 ~~~~~~~~~~---~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
....+..+.. ++-++|+|.....|.+|.......-+.+........|+.
T Consensus 59 e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 59 ERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred chheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 9876665533 357899999999999999888666666644444444443
No 166
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.22 E-value=0.002 Score=44.83 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=43.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCC
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~ 66 (316)
...+|+ +|..+...||.++|+.||.|.--.|.. .-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d-----TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND-----TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEECT-----TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC-----CcEEEEeecHHHHHHHHHHhc
Confidence 345666 999999999999999999999888764 479999999999999998775
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.16 E-value=0.0013 Score=42.18 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=41.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHH
Q 021177 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 164 (316)
Q Consensus 110 ~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~ 164 (316)
+.|-|.+.+....+..| ..|..||+|..+.+... ....+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~~--~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPES--TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCCC--CcEEEEEECCHHHHHhhC
Confidence 36778888876665544 58889999999888732 238999999999999985
No 168
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.15 E-value=0.002 Score=49.99 Aligned_cols=54 Identities=26% Similarity=0.447 Sum_probs=46.5
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 22 EVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 22 ~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
+|.+.|..||+|.=+++. .+.-+|+|.+-++|.+|+. |+|..+.|+.|+|....
T Consensus 52 ~ll~~~~~~GevvLvRfv-----~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV-----GDTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE-----TTCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE--
T ss_pred HHHHHHHhCCceEEEEEe-----CCeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCC
Confidence 678889999999988887 3568999999999999999 99999999999999754
No 169
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.04 E-value=0.00097 Score=65.16 Aligned_cols=82 Identities=28% Similarity=0.408 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCC--ceEEEEEc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELA 80 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g--~~l~v~~a 80 (316)
..+++.++|++|.+++....|...|..||.|..|.+-. ...||||.|++...|+.|++.|-|..|.| +.|.|.++
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h---gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH---GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc---CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 35788999999999999999999999999999988853 36699999999999999999999999975 57999998
Q ss_pred ccCCCCC
Q 021177 81 HGGRRHS 87 (316)
Q Consensus 81 ~~~~~~~ 87 (316)
......+
T Consensus 529 ~~~~~~P 535 (975)
T KOG0112|consen 529 SPPGATP 535 (975)
T ss_pred cCCCCCh
Confidence 8655433
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.03 E-value=0.0018 Score=55.48 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=50.9
Q ss_pred HHHHHHHhhcCCCeeEEEeccC-C---CCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 20 MREVEDLFYKYGPIVDIDLKIP-P---RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 20 ~~~L~~~F~~~G~V~~i~i~~~-~---~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
++++.+..++||+|..|.|... + .-.--.||+|...++|.+|+-.|||.+|+|+.+...|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4568888999999999988442 1 112358999999999999999999999999998877754
No 171
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.01 E-value=0.00068 Score=65.84 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=71.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEec--cCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCC
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK--IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~--~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (316)
..|+|.|.|+..|.+++..++..+|.+.++.++ ..|+++|-|||.|.++.+|..++..+++..+.-+.+.|..+.+..
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~ 816 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPER 816 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCcc
Confidence 468999999999999999999999999999874 368999999999999999999999899988888888888876644
Q ss_pred CCC
Q 021177 85 RHS 87 (316)
Q Consensus 85 ~~~ 87 (316)
..+
T Consensus 817 ~K~ 819 (881)
T KOG0128|consen 817 DKK 819 (881)
T ss_pred ccc
Confidence 333
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.0069 Score=56.50 Aligned_cols=66 Identities=26% Similarity=0.315 Sum_probs=54.9
Q ss_pred CceEEEeCCCCCCC------HHHHHHHHhhcCCeEEEEEeecCCC---eEEEEEecCHHHHHHHHHHhCCceecc
Q 021177 109 DYRVLVTGLPSSAS------WQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (316)
Q Consensus 109 ~~~l~V~nl~~~~t------~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~g 174 (316)
...|+|.|+|.--. ...|..+|+++|++.+..++-+..+ ||.|++|.++.+|+.|++.+||..++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 45788888886432 2356789999999999999966554 699999999999999999999999975
No 173
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.61 E-value=6.5e-05 Score=70.83 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=65.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
|.-++||+||...+..+-+..+...||-|..+.... |||++|.....+..|+..++-..++|+.+.+.....
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q 110 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQ 110 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhh
Confidence 567899999999999999999999999999988763 999999999999999999999999999988887543
No 174
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.58 E-value=0.02 Score=42.76 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=51.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcC-CCeeEEEeccCCCCCc-EEEEEECCHHHHHHHHHhCCCcccC
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKY-GPIVDIDLKIPPRPPG-YAFLEFEDYRDAEDAIRGRDGYNFD 71 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~-G~V~~i~i~~~~~~~g-~aFVef~~~e~A~~A~~~l~g~~~~ 71 (316)
....+.+...|..++.++|..+.+.+ ..|..++|..++.+.. .+.++|.+.++|+.-+..+||+.|.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34455565666666677787777776 4777888877776544 5888999999999999999998885
No 175
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.44 E-value=0.0037 Score=56.32 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=55.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeec---CCC--------------eEEEEEecCHHHHHHHHHHhCC
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---RGG--------------MTGIVDYTSYDDMKYAIRKLDR 169 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~--------------~~afV~f~~~~~A~~A~~~l~g 169 (316)
.+..+|.+.|||.+-..+.|.++|..+|.|..|.|... +.. .+|+|+|+..+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 35779999999999999999999999999999999877 221 2799999999999999988854
Q ss_pred c
Q 021177 170 S 170 (316)
Q Consensus 170 ~ 170 (316)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 176
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.44 E-value=0.011 Score=51.83 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=58.0
Q ss_pred CCCCCceEEEeCCCCCCCHHH------HHHHHhhcCCeEEEEEeecCCC-----e--EEEEEecCHHHHHHHHHHhCCce
Q 021177 105 SRRSDYRVLVTGLPSSASWQD------LKDHMRRAGDVCFSQVFRDRGG-----M--TGIVDYTSYDDMKYAIRKLDRSE 171 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~------l~~~f~~~G~v~~~~~~~~~~~-----~--~afV~f~~~~~A~~A~~~l~g~~ 171 (316)
......-+||-+|++.+..++ -.++|.+||.|..|.+.+.... + -.||.|.+.+||..++.+.+|..
T Consensus 110 RVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 110 RVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred eeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 344566889999999877665 3689999999999998875421 2 24999999999999999999999
Q ss_pred eccc
Q 021177 172 FRNA 175 (316)
Q Consensus 172 ~~g~ 175 (316)
++|+
T Consensus 190 ~DGr 193 (480)
T COG5175 190 LDGR 193 (480)
T ss_pred ccCc
Confidence 9995
No 177
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.34 E-value=0.012 Score=50.61 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=46.4
Q ss_pred HHHHHHHHhhcCCeEEEEEeecCCC-----eEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 123 WQDLKDHMRRAGDVCFSQVFRDRGG-----MTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 123 ~~~l~~~f~~~G~v~~~~~~~~~~~-----~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
+.++.+.+.+||.|..|.|...++. --.||+|+..++|.+|+-.|||..|+|+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr 357 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGR 357 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecce
Confidence 3467889999999999988877654 2689999999999999999999999995
No 178
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.33 E-value=0.017 Score=42.33 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=46.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEEE-E----------eecCCCeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ-V----------FRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~-~----------~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
...|.|-+.|+. ....+-+.|++||.|.... + .....+....|.|.+..+|.+|+ ..||..+.|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~ 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGS 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTC
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCc
Confidence 456888888887 5566778999999998764 1 11122348999999999999999 7899999884
No 179
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.21 E-value=0.0052 Score=57.63 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=56.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhh-cCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecc
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~-~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g 174 (316)
.......|+|.||-...|.-+|++++.+ .|.|...+|-+-+. .|||.|.+.++|.....+|||..+..
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKS--hCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKS--HCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhc--ceeEecccHHHHHHHHHHHhccccCC
Confidence 3456789999999999999999999994 56666665544433 69999999999999999999988864
No 180
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.19 E-value=0.0091 Score=52.78 Aligned_cols=70 Identities=20% Similarity=0.273 Sum_probs=58.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEE--------EEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceec
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~--------~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~ 173 (316)
.....+|||.+||..+++.+|.++|.++|.|.. |++.++.. .+-|.|.|++...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345679999999999999999999999997743 44444443 358999999999999999999999999
Q ss_pred cc
Q 021177 174 NA 175 (316)
Q Consensus 174 g~ 175 (316)
+.
T Consensus 143 gn 144 (351)
T KOG1995|consen 143 GN 144 (351)
T ss_pred CC
Confidence 84
No 181
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.09 E-value=0.0043 Score=52.28 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=58.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC---------e-------EEEEEecCHHHHHHHHHHhCCcee
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---------M-------TGIVDYTSYDDMKYAIRKLDRSEF 172 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---------~-------~afV~f~~~~~A~~A~~~l~g~~~ 172 (316)
.-.||++++|+.+....|+++|..||.|-.+.+...... + -|.|+|.+...|....+.||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 358999999999999999999999999999988643211 1 378999999999999999999999
Q ss_pred ccc
Q 021177 173 RNA 175 (316)
Q Consensus 173 ~g~ 175 (316)
+|+
T Consensus 154 ggk 156 (278)
T KOG3152|consen 154 GGK 156 (278)
T ss_pred CCC
Confidence 985
No 182
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.91 E-value=0.029 Score=43.17 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=54.9
Q ss_pred CCCeEEEcCCCCCC----CHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 5 SSRTLYVGNLPGDT----RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 5 ~~~~l~V~nLp~~~----t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
|-.||.|.=|..++ +...+...++.||+|..|.+- .+..|.|.|.|..+|-+|+..++. ...|..+.+.|-
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 44567776555554 334467778999999999874 256899999999999999998876 667888888774
Q ss_pred c
Q 021177 81 H 81 (316)
Q Consensus 81 ~ 81 (316)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 3
No 183
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=95.60 E-value=0.015 Score=50.96 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=11.1
Q ss_pred CcEEEEEECCHHHHHHHHH
Q 021177 45 PGYAFLEFEDYRDAEDAIR 63 (316)
Q Consensus 45 ~g~aFVef~~~e~A~~A~~ 63 (316)
+.-.||-|..+.-|..++.
T Consensus 173 RT~v~vry~pe~iACaciy 191 (367)
T KOG0835|consen 173 RTDVFVRYSPESIACACIY 191 (367)
T ss_pred ccceeeecCHHHHHHHHHH
Confidence 4456777765555555554
No 184
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.60 E-value=0.012 Score=48.10 Aligned_cols=80 Identities=19% Similarity=0.142 Sum_probs=50.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-CCCeeEEEe---ccC-----CCCCcEEEEEECCHHHHHHHHHhCCCcccCCc-
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYK-YGPIVDIDL---KIP-----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY- 73 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~V~~i~i---~~~-----~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~- 73 (316)
.....|.|.+||+++|++++++.++. ++....+.. ... ...-.-|||.|.+.+++..-...++|..|.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45678999999999999999998887 676622222 111 11234699999999999999999999877432
Q ss_pred ----eEEEEEcccC
Q 021177 74 ----RLRVELAHGG 83 (316)
Q Consensus 74 ----~l~v~~a~~~ 83 (316)
.-.|++|...
T Consensus 85 g~~~~~~VE~Apyq 98 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQ 98 (176)
T ss_dssp S-EEEEEEEE-SS-
T ss_pred CCCcceeEEEcchh
Confidence 4566666553
No 185
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.46 E-value=0.015 Score=49.14 Aligned_cols=74 Identities=28% Similarity=0.369 Sum_probs=59.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCccc----CCceEEEEEc
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF----DGYRLRVELA 80 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~----~g~~l~v~~a 80 (316)
..|||.||+.-++.+.+.+-|+.||+|..-.+.. .+++.+-++|+|...-.|.+|+..+.-..| .+.+..|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 6799999999999999999999999998866644 467888999999999999999987743323 3555555543
No 186
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.40 E-value=0.0071 Score=53.09 Aligned_cols=74 Identities=30% Similarity=0.438 Sum_probs=58.2
Q ss_pred eEEEcCCCCCCCHHHHHH---HhhcCCCeeEEEeccCC------CCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEE
Q 021177 8 TLYVGNLPGDTRMREVED---LFYKYGPIVDIDLKIPP------RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (316)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~---~F~~~G~V~~i~i~~~~------~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~ 78 (316)
-+||-+|+..+-.+.+.+ .|.+||.|..|.+..+. ...--+||+|...++|..|+...+|+.++|+.|+..
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 467888888877666654 78899999999985422 111238999999999999999999999999997776
Q ss_pred Ecc
Q 021177 79 LAH 81 (316)
Q Consensus 79 ~a~ 81 (316)
+..
T Consensus 159 ~gt 161 (327)
T KOG2068|consen 159 LGT 161 (327)
T ss_pred hCC
Confidence 644
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.18 E-value=0.15 Score=33.61 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=40.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcC----CCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhC
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKY----GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~----G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l 65 (316)
.+|+|.++. +++.++|+.+|..| ++. .|....+ .-|=|.|.+++.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 468999984 68999999999999 533 3333322 25789999999999999754
No 188
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.04 E-value=0.1 Score=35.97 Aligned_cols=58 Identities=24% Similarity=0.354 Sum_probs=37.0
Q ss_pred CCCHHHHHHHhhcCC-----CeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 17 DTRMREVEDLFYKYG-----PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 17 ~~t~~~L~~~F~~~G-----~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.++..+|..++...+ .|-.|.+. ..|+||+-. .+.|..++..|++..+.|+++.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 578889999988775 56667776 469999985 45789999999999999999999864
No 189
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.74 E-value=0.02 Score=52.42 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 4 RSSRTLYVGNLPGDT-RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~-t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
.+.+.|-+..+|..+ |.++|-..|.+||+|..|.+-.. .--|.|+|.+..+|-.|.. .++..|+++.|+|-|.+.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 345566666667664 56889999999999999998543 3468999999999988887 899999999999999876
Q ss_pred CC
Q 021177 83 GR 84 (316)
Q Consensus 83 ~~ 84 (316)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 43
No 190
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.59 E-value=0.077 Score=45.97 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=52.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCce-EEEEE
Q 021177 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR-LRVEL 79 (316)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~-l~v~~ 79 (316)
=|-|-++|+.- ...|..+|++||+|.+.... ..-.+-+|.|...-+|.+|+. .||++|+|.. |-|..
T Consensus 199 WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 199 WVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKP 266 (350)
T ss_pred eEEEeccCccc-hhHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeee
Confidence 36666777653 34678899999999997665 234689999999999999998 8999998875 44544
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.51 E-value=0.13 Score=48.15 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=54.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhh--cCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCC--ceecccccceEE
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRR--AGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYV 181 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~--~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g--~~~~g~~~~~~i 181 (316)
.+.|.+..||..+..++++.+|+- +-.+..|.+..+.+ =||+|++..||+.|...|.. +.|.|+.+..+|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n---WyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN---WYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc---eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 457888999999999999999994 67888888887754 68999999999999876632 344454443333
No 192
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.46 E-value=0.11 Score=47.39 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=59.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcC-CCeeEEEeccCCCCCcE-EEEEECCHHHHHHHHHhCCCcccCC
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKY-GPIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGRDGYNFDG 72 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~-G~V~~i~i~~~~~~~g~-aFVef~~~e~A~~A~~~l~g~~~~g 72 (316)
+++.|+|-.+|..+|-.||..+...+ -.|.+|++..++.+..| +.|.|.+.++|...++.+||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37889999999999999999988766 47889999888776554 8999999999999999999998853
No 193
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.23 E-value=0.071 Score=49.92 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=56.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc--CCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCC--cccCCceEEEEE
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYK--YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVEL 79 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~--~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g--~~~~g~~l~v~~ 79 (316)
.-|.|.+..||.++.+++|+-||.. |-++.+|.+.. ..-=||+|+++.||+.|++.|.- ..|.|++|...+
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~----N~nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH----NDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee----cCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 3466889999999999999999965 78999998853 22469999999999999876644 456677665443
No 194
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.22 E-value=0.19 Score=41.18 Aligned_cols=62 Identities=29% Similarity=0.365 Sum_probs=45.4
Q ss_pred CHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCC--CcccCCceEEEEEcccC
Q 021177 19 RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVELAHGG 83 (316)
Q Consensus 19 t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~--g~~~~g~~l~v~~a~~~ 83 (316)
..+.|.++|..|+.+..+..... =+=..|.|.+.+.|..|...|+ +..+.|..+.|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999998888877521 2358899999999999999999 99999999999998543
No 195
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=94.06 E-value=0.087 Score=46.28 Aligned_cols=12 Identities=0% Similarity=0.125 Sum_probs=7.1
Q ss_pred CCCHHHHHHHHh
Q 021177 120 SASWQDLKDHMR 131 (316)
Q Consensus 120 ~~t~~~l~~~f~ 131 (316)
.++++++.+++.
T Consensus 212 d~~k~eid~ic~ 223 (367)
T KOG0835|consen 212 DTTKREIDEICY 223 (367)
T ss_pred CCcHHHHHHHHH
Confidence 456666666554
No 196
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.05 E-value=0.47 Score=31.32 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=42.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhc---CCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHh
Q 021177 110 YRVLVTGLPSSASWQDLKDHMRRA---GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167 (316)
Q Consensus 110 ~~l~V~nl~~~~t~~~l~~~f~~~---G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l 167 (316)
..|+|.|+. +++.++++.+|..| .....+..+.+. -|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 478899884 58889999999998 234456666654 4889999999999999764
No 197
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.96 E-value=0.39 Score=37.50 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=39.8
Q ss_pred HHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 125 DLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 125 ~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
+|-+.|..||++.-+++..+ .-.|+|.+-..|.+|+ .++|.++.|+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaal-s~dg~~v~g~ 97 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAAL-SLDGIQVNGR 97 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHH-HGCCSEETTE
T ss_pred HHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHH-ccCCcEECCE
Confidence 67788889999998888875 4799999999999999 7999999995
No 198
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.87 E-value=0.78 Score=32.14 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=41.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCC
Q 021177 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 169 (316)
Q Consensus 111 ~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g 169 (316)
..+|. .|......||.++|..||.|.-..+... -|||...+.+.|..++..++.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dT----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDT----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEEEECTT----EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCC----cEEEEeecHHHHHHHHHHhcc
Confidence 44555 9999999999999999999987666644 699999999999998887754
No 199
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.44 E-value=1.1 Score=30.12 Aligned_cols=55 Identities=25% Similarity=0.486 Sum_probs=43.6
Q ss_pred CCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEE
Q 021177 17 DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (316)
Q Consensus 17 ~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v 77 (316)
.++.++|+..+..|+ -.+|.... .|| ||.|.+.++|++++...+|..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDDR----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEecC----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 578899999999995 33444432 454 89999999999999999999888777665
No 200
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=91.00 E-value=6.5 Score=34.37 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=97.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCC----------CCCcEEEEEECCHHHHHHHH----HhCCC--cc
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP----------RPPGYAFLEFEDYRDAEDAI----RGRDG--YN 69 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~----------~~~g~aFVef~~~e~A~~A~----~~l~g--~~ 69 (316)
++.|.+.|+..+++-..+...|-+||+|+.|++.... +...-..+.|-+.+.|-.-+ +.|.- ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999995432 33457889999998877644 22222 34
Q ss_pred cCCceEEEEEcccCCCCCCC-CCCCCCCC----CCCC-CCCCCCCCceEEEeCCCCCCCHHHH-HHHH---hhcC----C
Q 021177 70 FDGYRLRVELAHGGRRHSSS-MDRYSSYS----SGGS-RGVSRRSDYRVLVTGLPSSASWQDL-KDHM---RRAG----D 135 (316)
Q Consensus 70 ~~g~~l~v~~a~~~~~~~~~-~~~~~~~~----~~~~-~~~~~~~~~~l~V~nl~~~~t~~~l-~~~f---~~~G----~ 135 (316)
+....|.+.+..-.-..... .+....+. ..-. .-....+.+.|.|.= ...+..+++ .+.+ ..-+ -
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhccCCCceEE
Confidence 56778888886632211110 01111110 0000 112233445566653 234433332 2222 2223 3
Q ss_pred eEEEEEeecCC------CeEEEEEecCHHHHHHHHHHhCC
Q 021177 136 VCFSQVFRDRG------GMTGIVDYTSYDDMKYAIRKLDR 169 (316)
Q Consensus 136 v~~~~~~~~~~------~~~afV~f~~~~~A~~A~~~l~g 169 (316)
++.+.++.... ..||.+.|-+..-|.+.++.+..
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 45566654322 24999999999999998877753
No 201
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.67 E-value=0.17 Score=49.76 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=59.4
Q ss_pred EEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCccc--CCceEEEEEcccCC
Q 021177 10 YVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF--DGYRLRVELAHGGR 84 (316)
Q Consensus 10 ~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~--~g~~l~v~~a~~~~ 84 (316)
++-|.+-..|-.-|-.+|+.||.|.+.+...+ -..|.|+|...+.|..|++.|+|..+ .|-+.+|.+++.-.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~---~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRD---LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccc---ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 34455567788889999999999999988532 45799999999999999999999876 58889999887544
No 202
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.13 E-value=0.87 Score=37.14 Aligned_cols=69 Identities=12% Similarity=0.183 Sum_probs=46.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhh-cCCe---EEEEEeecCC------CeEEEEEecCHHHHHHHHHHhCCceeccccc
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRR-AGDV---CFSQVFRDRG------GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~-~G~v---~~~~~~~~~~------~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 177 (316)
..+|.|.+||+.+|++++.+.+.. ++.. .++.-..... -.-|||.|.+.+++..-...++|..+.+...
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 468999999999999999887775 6655 2332111111 1379999999999999999999988876443
No 203
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=89.96 E-value=0.014 Score=52.70 Aligned_cols=77 Identities=16% Similarity=0.304 Sum_probs=65.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
++.+.|.|||+...++-|..|...||.|+.|....+.......-|+|...+.+..|+..|+|..+....++|.|-..
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 56789999999999999999999999999988755433344455788999999999999999999999999887543
No 204
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.75 E-value=2.5 Score=40.28 Aligned_cols=78 Identities=22% Similarity=0.407 Sum_probs=61.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcC----CCeeEEEeccC-----------CCCC---------------------
Q 021177 3 SRSSRTLYVGNLPGD-TRMREVEDLFYKY----GPIVDIDLKIP-----------PRPP--------------------- 45 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~V~~i~i~~~-----------~~~~--------------------- 45 (316)
+.+++.|-|-||.|+ +...+|.-+|+.| |.|..|.|..+ -+.+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 467889999999996 8999999999877 69999998221 0111
Q ss_pred ------------------cEEEEEECCHHHHHHHHHhCCCcccC--CceEEEEEc
Q 021177 46 ------------------GYAFLEFEDYRDAEDAIRGRDGYNFD--GYRLRVELA 80 (316)
Q Consensus 46 ------------------g~aFVef~~~e~A~~A~~~l~g~~~~--g~~l~v~~a 80 (316)
=||.|+|.+.+.|.+.+..++|..|. |..|-+.|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 17999999999999999999999996 445555553
No 205
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=88.23 E-value=0.28 Score=43.13 Aligned_cols=8 Identities=0% Similarity=0.451 Sum_probs=3.2
Q ss_pred HHHHHHhh
Q 021177 125 DLKDHMRR 132 (316)
Q Consensus 125 ~l~~~f~~ 132 (316)
+|.+-|++
T Consensus 228 qId~~ie~ 235 (453)
T KOG2888|consen 228 QIDEKIEE 235 (453)
T ss_pred HHHHHHHh
Confidence 34444443
No 206
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=87.89 E-value=6.4 Score=29.36 Aligned_cols=64 Identities=9% Similarity=0.057 Sum_probs=46.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcC-CeEEEEEeecCCC--eEEEEEecCHHHHHHHHHHhCCceecc
Q 021177 111 RVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (316)
Q Consensus 111 ~l~V~nl~~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~--~~afV~f~~~~~A~~A~~~l~g~~~~g 174 (316)
.+.+...|..++..+|..+...+- .|..+.+.++... ..+.++|.+..+|.+-...+||+.+..
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444555566666766655543 5667788877543 478999999999999999999999875
No 207
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=87.44 E-value=0.64 Score=41.22 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=54.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCC--eEEEEEeecC----CCeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~--v~~~~~~~~~----~~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
...+||+||-|-+|.+||.+.....|- +..++++.+. ..|||.|...+.....+.++.|-.+.+.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 457999999999999999998887763 3344444443 237999999999999999999999999885
No 208
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.24 E-value=1.3 Score=40.99 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=53.2
Q ss_pred EEEeCCCCCC-CHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeecc
Q 021177 112 VLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (316)
Q Consensus 112 l~V~nl~~~~-t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (316)
+-+.-.|... +.++|...|.+||+|..|.+-.... -|.|+|.+..+|-.|. +.++..|++ +.|++.....
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~--~a~vTF~t~aeag~a~-~s~~avlnn----r~iKl~whnp 445 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL--HAVVTFKTRAEAGEAY-ASHGAVLNN----RFIKLFWHNP 445 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCchh--hheeeeeccccccchh-ccccceecC----ceeEEEEecC
Confidence 3333344443 5679999999999999998877632 5899999999997777 688888988 4677766554
No 209
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=87.06 E-value=0.97 Score=35.62 Aligned_cols=120 Identities=17% Similarity=0.117 Sum_probs=76.6
Q ss_pred EEEcCCC--CCCCHHHHHHHhhcC-CCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCCC
Q 021177 9 LYVGNLP--GDTRMREVEDLFYKY-GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 85 (316)
Q Consensus 9 l~V~nLp--~~~t~~~L~~~F~~~-G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (316)
..||.+. ...+-..|.+.+... +....+.+..- ..++..+.|.+++++.+++. .....++|..+.++...+...
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~ 94 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL--GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFN 94 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe--CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccc
Confidence 4455553 235666666666542 33333333221 26799999999999999987 555667787777776553221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCC-CCHHHHHHHHhhcCCeEEEEEeecC
Q 021177 86 HSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDR 145 (316)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~-~t~~~l~~~f~~~G~v~~~~~~~~~ 145 (316)
.... .......-|.|.|||.. .+++-+..+.+.+|++..++.....
T Consensus 95 ~~~~--------------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 95 PSEV--------------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred cccc--------------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 1110 00112335677899988 6778889999999999998877554
No 210
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=86.60 E-value=2.8 Score=32.53 Aligned_cols=62 Identities=8% Similarity=0.112 Sum_probs=45.6
Q ss_pred CCCceEEEeCCCCCC----CHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCce
Q 021177 107 RSDYRVLVTGLPSSA----SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~----t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~ 171 (316)
++..+|.|.=|..++ +...+-...+.||+|..+...-.. -|.|.|++..+|-+|+.+++...
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcCCC
Confidence 345677776555443 334455667789999998776543 69999999999999999887643
No 211
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=84.99 E-value=3 Score=36.47 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=52.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
+.-|.|-++|+... ..|..+|.+||+|.+.... .++.+-+|.|.+..+|++|+ ..||..|+|. .-|-|..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KAL-skng~ii~g~---vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKAL-SKNGTIIDGD---VMIGVKP 266 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhh-hhcCeeeccc---eEEeeee
Confidence 34566667765543 4566789999999887666 44558999999999999999 6789999884 4444444
No 212
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=84.44 E-value=2.3 Score=30.31 Aligned_cols=72 Identities=22% Similarity=0.338 Sum_probs=44.7
Q ss_pred EEEEECCHHHHHHHHHhCCC--cccCCceEEEEEcccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHH
Q 021177 48 AFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (316)
Q Consensus 48 aFVef~~~e~A~~A~~~l~g--~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 125 (316)
|.|+|.++.-|+..++ +.. ..+++..+.|............ -.--......+|.|.|||...++++
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k-----------~qv~~~vs~rtVlvsgip~~l~ee~ 68 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQK-----------FQVFSGVSKRTVLVSGIPDVLDEEE 68 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceE-----------EEEEEcccCCEEEEeCCCCCCChhh
Confidence 6899999999999987 333 3445666666553322111000 0000123456899999999999999
Q ss_pred HHHHHh
Q 021177 126 LKDHMR 131 (316)
Q Consensus 126 l~~~f~ 131 (316)
|++...
T Consensus 69 l~D~Le 74 (88)
T PF07292_consen 69 LRDKLE 74 (88)
T ss_pred heeeEE
Confidence 886543
No 213
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=82.10 E-value=5.7 Score=38.22 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=27.6
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHHhhcCCeEEEEEeecC
Q 021177 106 RRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDR 145 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~-~t~~~l~~~f~~~G~v~~~~~~~~~ 145 (316)
......+.|.+.+.+ +...---+.+.+.|++..|.+....
T Consensus 58 QenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRpr 98 (1027)
T KOG3580|consen 58 QENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPR 98 (1027)
T ss_pred ccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccc
Confidence 345667888887764 4444445667789999988887654
No 214
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=81.77 E-value=0.74 Score=40.77 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=53.3
Q ss_pred CceEEEeCCCCCCCHHHH---HHHHhhcCCeEEEEEeecCC----C---eEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 109 DYRVLVTGLPSSASWQDL---KDHMRRAGDVCFSQVFRDRG----G---MTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l---~~~f~~~G~v~~~~~~~~~~----~---~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
...+||-+|+.....+.+ .+.|.+||.|..+.+..++. . .-++|+|+..++|..|+...+|..++|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh
Confidence 456778888877655444 35788999999999888662 1 2589999999999999999999999885
No 215
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.15 E-value=7.1 Score=36.18 Aligned_cols=66 Identities=11% Similarity=0.173 Sum_probs=57.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhc-CCeEEEEEeecCCC--eEEEEEecCHHHHHHHHHHhCCceecc
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRA-GDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~-G~v~~~~~~~~~~~--~~afV~f~~~~~A~~A~~~l~g~~~~g 174 (316)
...|.|-.+|..++..||-.|+..+ ..|..+.+++++.. ..+.|.|.+.++|..-.+.+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 6789999999999999999999865 46778888887543 478999999999999999999999875
No 216
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=79.77 E-value=0.33 Score=47.78 Aligned_cols=12 Identities=8% Similarity=0.008 Sum_probs=7.1
Q ss_pred CCceEEEeCCCC
Q 021177 108 SDYRVLVTGLPS 119 (316)
Q Consensus 108 ~~~~l~V~nl~~ 119 (316)
...+.|++++..
T Consensus 144 ~~qR~f~gvvtk 155 (1194)
T KOG4246|consen 144 EPQRRFAGVVTK 155 (1194)
T ss_pred Ccceeeehhhhh
Confidence 345677776543
No 217
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=79.48 E-value=9.7 Score=31.27 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=43.4
Q ss_pred CCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhC--CceecccccceEEEEEee
Q 021177 121 ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD--RSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 121 ~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~--g~~~~g~~~~~~i~v~~~ 186 (316)
-..+.|+++|..++.+........=. -..|.|.+.++|..|...++ +..+.|. .+++...
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~----~l~~yf~ 68 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGK----RLRVYFG 68 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTE----E-EEE--
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCC----ceEEEEc
Confidence 34578999999999988877665432 58899999999999999999 8999984 5666655
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=77.82 E-value=17 Score=24.69 Aligned_cols=58 Identities=14% Similarity=0.247 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHhhcC-----CeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEE
Q 021177 118 PSSASWQDLKDHMRRAG-----DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (316)
Q Consensus 118 ~~~~t~~~l~~~f~~~G-----~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~ 184 (316)
-..++..+|-.++...+ .|-.+.+..+ |+||+-.. +.|..++..+++..+.|+ ++.++
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~-~~a~~v~~~l~~~~~~gk----~v~ve 72 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPE-EVAEKVLEALNGKKIKGK----KVRVE 72 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-T-T-HHHHHHHHTT--SSS--------EE
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECH-HHHHHHHHHhcCCCCCCe----eEEEE
Confidence 34678888888888765 4455666655 88888654 478899999999999995 55554
No 219
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=76.99 E-value=1.3 Score=43.86 Aligned_cols=70 Identities=17% Similarity=0.167 Sum_probs=53.7
Q ss_pred EeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeec
Q 021177 114 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (316)
Q Consensus 114 V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (316)
+.|.+-..+-.-|..+|.+||.|..++..++-+ .|.|+|...+.|..|.++++|+++--- +.+.+|.+++
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~--g~Ps~V~~ak 372 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVT--GAPSRVSFAK 372 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccccc--CCceeEEecc
Confidence 334444556667899999999999999987654 799999999999999999999887421 1345555544
No 220
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=76.95 E-value=2.1 Score=41.35 Aligned_cols=66 Identities=15% Similarity=0.041 Sum_probs=57.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
+.++..++||+|+...+..+-++.+...+|.|..+.... |||.+|....-+..|+..++...++|.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 456678999999999999999999999999998886665 899999999999999988887777664
No 221
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=76.36 E-value=1.2 Score=38.33 Aligned_cols=67 Identities=19% Similarity=0.477 Sum_probs=44.8
Q ss_pred CCCCeEEEcCCCCC------------CCHHHHHHHhhcCCCeeEEEecc--------CCCC-----CcE---------EE
Q 021177 4 RSSRTLYVGNLPGD------------TRMREVEDLFYKYGPIVDIDLKI--------PPRP-----PGY---------AF 49 (316)
Q Consensus 4 ~~~~~l~V~nLp~~------------~t~~~L~~~F~~~G~V~~i~i~~--------~~~~-----~g~---------aF 49 (316)
.-..|||+.+||-. -+++-|+..|+.||.|..|.|+. +++. .|| ||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 34568999998753 45678999999999999999842 2322 333 34
Q ss_pred EEECCHHHHHHHHHhCCCccc
Q 021177 50 LEFEDYRDAEDAIRGRDGYNF 70 (316)
Q Consensus 50 Vef~~~e~A~~A~~~l~g~~~ 70 (316)
|+|...-.-..|+..|-|+.+
T Consensus 227 vqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchH
Confidence 555555555556666666554
No 222
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=74.10 E-value=13 Score=26.21 Aligned_cols=57 Identities=11% Similarity=0.183 Sum_probs=42.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-CC-CeeEEEeccCCCCCcEEEEEECCHHHHHHHHHh
Q 021177 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG 64 (316)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~-~G-~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~ 64 (316)
.-|+-.++..++..+|.+.++. || +|..|..........=|||.+.....|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 3556667899999999999987 45 677776644333344699999999888876543
No 223
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=73.00 E-value=16 Score=25.34 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=40.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-CC-CeeEEEeccCCCCCcEEEEEECCHHHHHHHHH
Q 021177 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (316)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~-~G-~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~ 63 (316)
.-|+-.++..++..||.+.++. || +|..|..........=|||.+...+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 4567778999999999999987 45 66666664333334469999998888877654
No 224
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=69.30 E-value=24 Score=30.75 Aligned_cols=16 Identities=31% Similarity=0.119 Sum_probs=6.7
Q ss_pred EEECCHHHHHHHHHhC
Q 021177 50 LEFEDYRDAEDAIRGR 65 (316)
Q Consensus 50 Vef~~~e~A~~A~~~l 65 (316)
+-|+|....+-.+..|
T Consensus 57 lgfEDdVViefvynqL 72 (354)
T KOG2146|consen 57 LGFEDDVVIEFVYNQL 72 (354)
T ss_pred hccccchhHHHHHHHH
Confidence 3344444444444333
No 225
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=68.34 E-value=6.4 Score=31.86 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=54.7
Q ss_pred CCeEEEcCCCCCCCH-----HHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCc-eEEEEE
Q 021177 6 SRTLYVGNLPGDTRM-----REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RLRVEL 79 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~-----~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~-~l~v~~ 79 (316)
..++.+.+|+..+-. ....++|.+|-+..-..+. ++.+..-|-|.+++.|..|...+++..|.|+ .++..+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 345888888776433 2345577766665555544 2356777899999999999999999999988 788777
Q ss_pred cccCC
Q 021177 80 AHGGR 84 (316)
Q Consensus 80 a~~~~ 84 (316)
+...-
T Consensus 87 aQ~~~ 91 (193)
T KOG4019|consen 87 AQPGH 91 (193)
T ss_pred ccCCC
Confidence 76543
No 226
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=62.09 E-value=19 Score=23.72 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=17.0
Q ss_pred HHHHHHhhcCCCeeEEEec
Q 021177 21 REVEDLFYKYGPIVDIDLK 39 (316)
Q Consensus 21 ~~L~~~F~~~G~V~~i~i~ 39 (316)
.+|+++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6799999999999998884
No 227
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=61.61 E-value=33 Score=31.53 Aligned_cols=77 Identities=21% Similarity=0.411 Sum_probs=57.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcC----CCeeEEEecc-------------CC----------------------
Q 021177 3 SRSSRTLYVGNLPGD-TRMREVEDLFYKY----GPIVDIDLKI-------------PP---------------------- 42 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~V~~i~i~~-------------~~---------------------- 42 (316)
+.+++.|-|-||.|+ +...+|..+|+.| |+|..|.|.. .|
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 578899999999996 8889999999866 6788777711 01
Q ss_pred ----CC----------Cc-------------------EEEEEECCHHHHHHHHHhCCCcccCCc--eEEEEE
Q 021177 43 ----RP----------PG-------------------YAFLEFEDYRDAEDAIRGRDGYNFDGY--RLRVEL 79 (316)
Q Consensus 43 ----~~----------~g-------------------~aFVef~~~e~A~~A~~~l~g~~~~g~--~l~v~~ 79 (316)
.. .| ||.|++.+.+.++..+..++|..+... .+-+.|
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRf 294 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRF 294 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeee
Confidence 00 11 788999999999999999999888643 344444
No 228
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=61.55 E-value=40 Score=22.55 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecc
Q 021177 120 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (316)
Q Consensus 120 ~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g 174 (316)
.++-++++..+.+|+-.. +..+..| -||.|.+..+|+++....+|..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~---I~~d~tG--fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR---IRDDRTG--FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCcce---EEecCCE--EEEEECChHHHHHHHHhcCCCEEEE
Confidence 467889999999886443 3344432 5899999999999999999998876
No 229
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=61.00 E-value=6.4 Score=29.66 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=27.7
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHH
Q 021177 8 TLYVGNLPGD---------TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDA 58 (316)
Q Consensus 8 ~l~V~nLp~~---------~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A 58 (316)
++.|-|++.. ++.++|.+.|..|..++-.-+.......|++.|+|...-..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHH
Confidence 4567777554 46678999999998876544433334478999999976554
No 230
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=60.35 E-value=20 Score=25.41 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=35.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEEC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFE 53 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~ 53 (316)
+...-|||||++..+-+.-...+.+..+.-.-+-+..+....||+|-.+-
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 35566999999999888776666666655555555444457899998873
No 231
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=59.14 E-value=1.6 Score=43.26 Aligned_cols=13 Identities=8% Similarity=0.123 Sum_probs=6.1
Q ss_pred CcEEEEEECCHHH
Q 021177 45 PGYAFLEFEDYRD 57 (316)
Q Consensus 45 ~g~aFVef~~~e~ 57 (316)
..|+.+......+
T Consensus 59 ~~y~~t~~~~~qq 71 (1194)
T KOG4246|consen 59 SVYGSTSLSSSQQ 71 (1194)
T ss_pred ccccccchhhhhh
Confidence 3455555544443
No 232
>PF14893 PNMA: PNMA
Probab=58.85 E-value=7.6 Score=35.03 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=38.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhh----cCCCeeEEEecc-CCCCCcEEEEEECCHHH
Q 021177 1 MSSRSSRTLYVGNLPGDTRMREVEDLFY----KYGPIVDIDLKI-PPRPPGYAFLEFEDYRD 57 (316)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~----~~G~V~~i~i~~-~~~~~g~aFVef~~~e~ 57 (316)
|+-++.+.|.|.+||.+|++++|.+.+. ..|...-+.-+. ......-|+|+|...-+
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n 74 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVN 74 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccc
Confidence 6678899999999999999999998765 445433222211 11123468888875443
No 233
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.99 E-value=22 Score=32.57 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=42.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEeccCCCCCcEEEEEECCHHHHHHHHHh
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGP-IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG 64 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~-V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~ 64 (316)
..+|-|.++|.....+||...|+.||. --+|+.+. ...||-.|.....|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD----dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD----DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEee----cceeEEeecchHHHHHHhhc
Confidence 467889999999999999999999962 22222222 33699999999999999983
No 234
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=56.01 E-value=13 Score=33.78 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=50.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEecc-----CCCCCcEEEEEECCHHHHHHHHHhCCCccc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKI-----PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-~V~~i~i~~-----~~~~~g~aFVef~~~e~A~~A~~~l~g~~~ 70 (316)
.-..|.|.+||+.+|+.++.+-..++- .|....+.. ..+.-+.|||.|..+++...-...++|..|
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 346788999999999999999888874 444444431 123356799999999998888888898665
No 235
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=54.77 E-value=56 Score=28.57 Aligned_cols=52 Identities=12% Similarity=0.087 Sum_probs=38.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHH
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYD 158 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~ 158 (316)
....+-|+++||+.++...||+..+.+.+.+- ..+.....-+.||+.|.+..
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcceeEecCCcc
Confidence 34456799999999999999999999887653 33334444457999997643
No 236
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=53.47 E-value=8.4 Score=32.55 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=30.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEe
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i 38 (316)
...+||+-|||..+|++.|..+.+++|.+..+.+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 5678999999999999999999999997776655
No 237
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=51.06 E-value=21 Score=28.95 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=33.1
Q ss_pred CCHHHHHHHhhcC-CCeeEEEecc--CC--CCCcEEEEEECCHHHHHHHHH
Q 021177 18 TRMREVEDLFYKY-GPIVDIDLKI--PP--RPPGYAFLEFEDYRDAEDAIR 63 (316)
Q Consensus 18 ~t~~~L~~~F~~~-G~V~~i~i~~--~~--~~~g~aFVef~~~e~A~~A~~ 63 (316)
.|+++|..+...- |++..+.+.. .+ .-+|-.||.|.+.++|.+.++
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 4555555544433 6999999843 22 457889999999999998776
No 238
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=49.07 E-value=28 Score=30.41 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=35.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHH
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYR 56 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e 56 (316)
.-||++||+.++...||+..+.+.|-+- +.|.+.|+ .|-||+.|-+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~-~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGH-FGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc-eeEeeecC-CcceeEecCCcc
Confidence 4499999999999999999998876332 23323332 567999997653
No 239
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=46.17 E-value=37 Score=30.35 Aligned_cols=32 Identities=25% Similarity=0.204 Sum_probs=23.0
Q ss_pred EEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 48 AFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 48 aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
|||.|+++.+|..|.+.+.... +..+.++.|.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC
Confidence 7999999999999999554432 3444555544
No 240
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=44.13 E-value=41 Score=24.44 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=33.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCH
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDY 55 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~ 55 (316)
...-||||+++..+-+.--..+-+.++.=.-+-+..+....||+|-.+-+.
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 455699999988887765555555555433333334455569999887654
No 241
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=43.82 E-value=78 Score=19.63 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCC-CeeEEEeccCCCCCcEEEEEECCHHHHHHHH
Q 021177 20 MREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (316)
Q Consensus 20 ~~~L~~~F~~~G-~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~ 62 (316)
-.++-++|...| .|..+.+.......+...+.+.+.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 345667777776 8888877544345677888888888877765
No 242
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=43.19 E-value=79 Score=24.80 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=37.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-CC-CeeEEEeccCCCCCcEEEEEECCHHHHHHHH
Q 021177 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (316)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~-~G-~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~ 62 (316)
+-|+-.+....+..||.+.++. || +|..|.........-=|||.+....+|....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVA 139 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHH
Confidence 4566667889999999999987 44 5555555332222336999998877765443
No 243
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.99 E-value=2.1e+02 Score=27.92 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=54.7
Q ss_pred CCCceEEEeCCCCC-CCHHHHHHHHhhc----CCeEEEEEeec--------------C-------------C--------
Q 021177 107 RSDYRVLVTGLPSS-ASWQDLKDHMRRA----GDVCFSQVFRD--------------R-------------G-------- 146 (316)
Q Consensus 107 ~~~~~l~V~nl~~~-~t~~~l~~~f~~~----G~v~~~~~~~~--------------~-------------~-------- 146 (316)
....+|-|.|+.|. +...+|.-+|..| |.|..+.|... + .
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45678999999997 7889999888854 57777777521 2 0
Q ss_pred ---------------C-eEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 147 ---------------G-MTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 147 ---------------~-~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
. .||.|+|.+.+.|.......+|.++...
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 0 2899999999999999999999999763
No 244
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=41.37 E-value=44 Score=23.41 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=24.6
Q ss_pred CeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCc
Q 021177 32 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (316)
Q Consensus 32 ~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~ 68 (316)
.|.++..+ ...+||-|||=.++.++..|++.+.+.
T Consensus 33 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAP--DSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE---TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEe--CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 45555443 346999999999999999999877663
No 245
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=40.01 E-value=16 Score=25.97 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHh
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLF 27 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F 27 (316)
-..++|.|.|||..+.+++|++.+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 356899999999999999998654
No 246
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=39.44 E-value=1.1e+02 Score=19.91 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=30.6
Q ss_pred CHHHHHHHhhcCC-CeeEEEeccCCCCCcEEEEEECCHHHHHHHHH
Q 021177 19 RMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (316)
Q Consensus 19 t~~~L~~~F~~~G-~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~ 63 (316)
.-.+|-++|.+.| .|.++.....+. +++.-+.+.+.+.|.+++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALK 58 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHH
Confidence 3466888888876 788887744433 5666667777777777776
No 247
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=37.69 E-value=67 Score=24.14 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=24.7
Q ss_pred eEEEeCCCCC---------CCHHHHHHHHhhcCCeEEEEEeecCCC--eEEEEEecCHH
Q 021177 111 RVLVTGLPSS---------ASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYD 158 (316)
Q Consensus 111 ~l~V~nl~~~---------~t~~~l~~~f~~~G~v~~~~~~~~~~~--~~afV~f~~~~ 158 (316)
.+.|.|++.. .+.++|.+.|..|..+.. ....+..+ +++.|+|..--
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv-~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKV-KPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEE-EEEEETTEEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCcee-EECcCCCCCcEEEEEEECCCh
Confidence 5666666543 356789999999988864 44444443 68999997643
No 248
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=34.73 E-value=5.4 Score=37.88 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=51.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccC---CCCCcEEEEEECCHHHHHHHHHhCCCcccCC
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~---~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g 72 (316)
..++|++.||+++++-++|..+...+--+..+.+... ..-..++.|.|.---....|...||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4678999999999999999999999877777666321 2234578889987777677777777765543
No 249
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=34.34 E-value=1.1e+02 Score=20.71 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=40.8
Q ss_pred HHHHHHhhcCC-CeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 21 REVEDLFYKYG-PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 21 ~~L~~~F~~~G-~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
++|.+-|..+| .|..+.-+. ++.+...-||+.....+... .|+=..+.|+.+.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46888888888 777776644 34566778888876654444 455567789998888654
No 250
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=33.68 E-value=1.4e+02 Score=20.07 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=40.3
Q ss_pred HHHHHHhhcCC-CeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 21 REVEDLFYKYG-PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 21 ~~L~~~F~~~G-~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
++|.+-|...| +|..+.-+. ++.+...-||+.+...+.+.++ +=..+.+..+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCC
Confidence 56778888888 666665543 4566678899988776644443 34567788888887553
No 251
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=33.67 E-value=34 Score=19.82 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHhhcCCC
Q 021177 16 GDTRMREVEDLFYKYGP 32 (316)
Q Consensus 16 ~~~t~~~L~~~F~~~G~ 32 (316)
.++++++|++.|.+.++
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46889999999988754
No 252
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=33.41 E-value=80 Score=22.41 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=30.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc-CCCeeEEEeccCCCCCcEEEEEECC
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYK-YGPIVDIDLKIPPRPPGYAFLEFED 54 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~-~G~V~~i~i~~~~~~~g~aFVef~~ 54 (316)
...-||||+++..+-+.--..+-+. .++=.-+-+..+....||+|-.+-+
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 4566999999888776544444444 3333223333345567888887765
No 253
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=33.28 E-value=2.2e+02 Score=21.77 Aligned_cols=71 Identities=15% Similarity=0.077 Sum_probs=49.7
Q ss_pred CCCeEEEcCCCCC---CCHHHHHHHhhcCC-CeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 5 SSRTLYVGNLPGD---TRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 5 ~~~~l~V~nLp~~---~t~~~L~~~F~~~G-~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
+...|.|...... .+..++.+..+.-| .++.+..- .+..-|.|.++++-.+|.+.|....=++-.|.+..+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4456777776444 56778888888877 56666553 347889999999999998877765545555555443
No 254
>PRK15464 cold shock-like protein CspH; Provisional
Probab=32.52 E-value=31 Score=23.35 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=12.6
Q ss_pred CCeeEEEeccCCCCCcEEEEEECC
Q 021177 31 GPIVDIDLKIPPRPPGYAFLEFED 54 (316)
Q Consensus 31 G~V~~i~i~~~~~~~g~aFVef~~ 54 (316)
|.|+.+.-. +|||||+=.+
T Consensus 7 G~Vk~fn~~-----KGfGFI~~~~ 25 (70)
T PRK15464 7 GIVKTFDRK-----SGKGFIIPSD 25 (70)
T ss_pred EEEEEEECC-----CCeEEEccCC
Confidence 566655432 8999997654
No 255
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=31.44 E-value=1.8e+02 Score=22.93 Aligned_cols=33 Identities=33% Similarity=0.361 Sum_probs=25.8
Q ss_pred eeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCC
Q 021177 33 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (316)
Q Consensus 33 V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g 67 (316)
|.++.++. .-+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp~--~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPP--ELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccC--CCCcEEEEEEEChHHHHHHHhcCCC
Confidence 66666543 3589999999988999999987765
No 256
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=31.35 E-value=66 Score=29.40 Aligned_cols=66 Identities=15% Similarity=0.257 Sum_probs=48.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC-------eEEEEEecCHHHHHHHHHHhCCceecc
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-------MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~-------~~afV~f~~~~~A~~A~~~l~g~~~~g 174 (316)
...+.|.+||+..++++|.+....+-.-.+...+..... +.+||.|...++...-....+|..+-.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 457889999999999999888777654444333332111 368999999999888888888887754
No 257
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=30.30 E-value=23 Score=31.91 Aligned_cols=50 Identities=14% Similarity=0.006 Sum_probs=40.5
Q ss_pred CCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCc
Q 021177 18 TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (316)
Q Consensus 18 ~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~ 68 (316)
++...|.+++++.|.|..-.|..+ .+-|.|||-...+++++++++.|.+.
T Consensus 273 ~~~p~iF~~i~~~G~v~~~EM~rt-FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 273 WPPPPIFKWLQKAGNVEREEMYRT-FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCCcHHHHHHHHhcCCCHHHHHHH-hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 445779999999998887666433 33688999999999999999988875
No 258
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=30.12 E-value=1.2e+02 Score=20.53 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=27.7
Q ss_pred HhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcc
Q 021177 26 LFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 69 (316)
Q Consensus 26 ~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~ 69 (316)
-+..||.|..+-=. ..|+.+ |-+.++++..++.|....
T Consensus 16 ~L~kfG~i~Y~Skk-----~kYvvl-Yvn~~~~e~~~~kl~~l~ 53 (71)
T PF09902_consen 16 QLRKFGDIHYVSKK-----MKYVVL-YVNEEDVEEIIEKLKKLK 53 (71)
T ss_pred hHhhcccEEEEECC-----ccEEEE-EECHHHHHHHHHHHhcCC
Confidence 34789999886543 346655 779999999998777643
No 259
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=29.53 E-value=41 Score=22.51 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=24.8
Q ss_pred CCeeEEEeccCCCCCcEEEEEECCH-HHH---HHHHHhCCC--cccCCceEEEEEcccC
Q 021177 31 GPIVDIDLKIPPRPPGYAFLEFEDY-RDA---EDAIRGRDG--YNFDGYRLRVELAHGG 83 (316)
Q Consensus 31 G~V~~i~i~~~~~~~g~aFVef~~~-e~A---~~A~~~l~g--~~~~g~~l~v~~a~~~ 83 (316)
|.|+.+.-. +|||||+=.+. +++ ..|+. ..| ..-.|..+........
T Consensus 4 G~Vk~f~~~-----kGfGFI~~~~g~~dvfvH~s~~~-~~g~~~l~~G~~V~f~~~~~~ 56 (68)
T TIGR02381 4 GIVKWFNNA-----KGFGFICPEGVDGDIFAHYSTIQ-MDGYRTLKAGQKVQFEVVQGP 56 (68)
T ss_pred eEEEEEeCC-----CCeEEEecCCCCccEEEEHHHhh-hcCCCCCCCCCEEEEEEEECC
Confidence 666665433 89999977652 221 12332 122 2335666666655543
No 260
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=29.46 E-value=1.5e+02 Score=21.41 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=34.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-------C-CCeeEEEe--------ccCCCCCc-EEEEEECCHHHHHHHHH
Q 021177 8 TLYVGNLPGDTRMREVEDLFYK-------Y-GPIVDIDL--------KIPPRPPG-YAFLEFEDYRDAEDAIR 63 (316)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~-------~-G~V~~i~i--------~~~~~~~g-~aFVef~~~e~A~~A~~ 63 (316)
++|| |.++++++++..+.+. . |.|..+.- +..+...| |.++.|.-+.++.+.++
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 3444 4677888877665543 3 46666554 12344556 68889987777777765
No 261
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=29.42 E-value=42 Score=22.98 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=11.7
Q ss_pred CCeeEEEeccCCCCCcEEEEEEC
Q 021177 31 GPIVDIDLKIPPRPPGYAFLEFE 53 (316)
Q Consensus 31 G~V~~i~i~~~~~~~g~aFVef~ 53 (316)
|.|+.+.- .+|||||+=.
T Consensus 4 G~Vkwfn~-----~KGfGFI~~~ 21 (74)
T PRK09937 4 GTVKWFNN-----AKGFGFICPE 21 (74)
T ss_pred eEEEEEeC-----CCCeEEEeeC
Confidence 55555443 2899999654
No 262
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=29.27 E-value=39 Score=22.71 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=12.4
Q ss_pred CCeeEEEeccCCCCCcEEEEEECC
Q 021177 31 GPIVDIDLKIPPRPPGYAFLEFED 54 (316)
Q Consensus 31 G~V~~i~i~~~~~~~g~aFVef~~ 54 (316)
|.|+.+.- .+|||||+=.+
T Consensus 6 G~Vk~f~~-----~kGyGFI~~~~ 24 (69)
T PRK09507 6 GNVKWFNE-----SKGFGFITPED 24 (69)
T ss_pred eEEEEEeC-----CCCcEEEecCC
Confidence 55655443 28999997654
No 263
>PRK14998 cold shock-like protein CspD; Provisional
Probab=29.23 E-value=43 Score=22.84 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=12.7
Q ss_pred CCeeEEEeccCCCCCcEEEEEECC
Q 021177 31 GPIVDIDLKIPPRPPGYAFLEFED 54 (316)
Q Consensus 31 G~V~~i~i~~~~~~~g~aFVef~~ 54 (316)
|.|+.+.-. +|||||.=.+
T Consensus 4 G~Vkwfn~~-----kGfGFI~~~~ 22 (73)
T PRK14998 4 GTVKWFNNA-----KGFGFICPEG 22 (73)
T ss_pred eEEEEEeCC-----CceEEEecCC
Confidence 666655433 8999997654
No 264
>PRK10943 cold shock-like protein CspC; Provisional
Probab=29.13 E-value=39 Score=22.68 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=12.4
Q ss_pred CCeeEEEeccCCCCCcEEEEEECC
Q 021177 31 GPIVDIDLKIPPRPPGYAFLEFED 54 (316)
Q Consensus 31 G~V~~i~i~~~~~~~g~aFVef~~ 54 (316)
|.|+.+.- .+|||||+=.+
T Consensus 6 G~Vk~f~~-----~kGfGFI~~~~ 24 (69)
T PRK10943 6 GQVKWFNE-----SKGFGFITPAD 24 (69)
T ss_pred eEEEEEeC-----CCCcEEEecCC
Confidence 55555443 28999997654
No 265
>PRK15463 cold shock-like protein CspF; Provisional
Probab=28.89 E-value=39 Score=22.80 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=12.7
Q ss_pred CCeeEEEeccCCCCCcEEEEEECC
Q 021177 31 GPIVDIDLKIPPRPPGYAFLEFED 54 (316)
Q Consensus 31 G~V~~i~i~~~~~~~g~aFVef~~ 54 (316)
|.|+.+.-. +|||||+=.+
T Consensus 7 G~Vk~fn~~-----kGfGFI~~~~ 25 (70)
T PRK15463 7 GIVKTFDGK-----SGKGLITPSD 25 (70)
T ss_pred EEEEEEeCC-----CceEEEecCC
Confidence 566655432 8999997654
No 266
>PHA03164 hypothetical protein; Provisional
Probab=27.53 E-value=17 Score=24.78 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=20.1
Q ss_pred EEEEEeeeecchhhhhhhhhhhcccccC
Q 021177 285 FYVFIMPCTVNCAKIHLLLICSCLFTSN 312 (316)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (316)
.++|++..+.+++.|..+.+++-+|.++
T Consensus 57 tftFlvLtgLaIamILfiifvlyvFnVn 84 (88)
T PHA03164 57 TFTFLVLTGLAIAMILFIIFVLYVFNVN 84 (88)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHheeec
Confidence 4677777777777777777777777664
No 267
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=27.23 E-value=1.5e+02 Score=28.50 Aligned_cols=40 Identities=40% Similarity=0.623 Sum_probs=34.9
Q ss_pred CcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCC
Q 021177 45 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (316)
Q Consensus 45 ~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (316)
..|+++.|+++..+.+|+..++|..+.+..+.+..+....
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEV 102 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccc
Confidence 5699999999999999999999999999888888766443
No 268
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=27.18 E-value=51 Score=21.57 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=13.3
Q ss_pred CCeeEEEeccCCCCCcEEEEEECCH
Q 021177 31 GPIVDIDLKIPPRPPGYAFLEFEDY 55 (316)
Q Consensus 31 G~V~~i~i~~~~~~~g~aFVef~~~ 55 (316)
|.|+.+.-. +|||||+-.+.
T Consensus 3 G~V~~~~~~-----kgyGFI~~~~~ 22 (66)
T PF00313_consen 3 GTVKWFDDE-----KGYGFITSDDG 22 (66)
T ss_dssp EEEEEEETT-----TTEEEEEETTS
T ss_pred EEEEEEECC-----CCceEEEEccc
Confidence 455554432 79999998754
No 269
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.09 E-value=75 Score=21.40 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.6
Q ss_pred cEEEEEECCHHHHHHHHHhCCCcccC
Q 021177 46 GYAFLEFEDYRDAEDAIRGRDGYNFD 71 (316)
Q Consensus 46 g~aFVef~~~e~A~~A~~~l~g~~~~ 71 (316)
.+++|.|.+..+|.+|-+.|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 47899999999999999878765543
No 270
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.33 E-value=4.2e+02 Score=26.16 Aligned_cols=101 Identities=14% Similarity=0.122 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCC--Cccc------CCceEEEEEcccCCCCC
Q 021177 16 GDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNF------DGYRLRVELAHGGRRHS 87 (316)
Q Consensus 16 ~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~--g~~~------~g~~l~v~~a~~~~~~~ 87 (316)
|..-.++|.+.|..-+-|..+.+.. .||-++......-+....+.+. +..+ .|++|.|+++.++.
T Consensus 56 P~eiA~~i~~~l~~~~~~~~veiaG----pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNp--- 128 (577)
T COG0018 56 PREIAEEIAEKLDTDEIIEKVEIAG----PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANP--- 128 (577)
T ss_pred HHHHHHHHHHhccccCcEeEEEEcC----CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCC---
Confidence 3334566777777766688887752 4566665554444444433333 2222 57899999977544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcC-CeEEEEEeec
Q 021177 88 SSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRD 144 (316)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G-~v~~~~~~~~ 144 (316)
..-++||.+-..+=-+-|-.++...| .|.....+.|
T Consensus 129 ---------------------tkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD 165 (577)
T COG0018 129 ---------------------TGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVND 165 (577)
T ss_pred ---------------------CCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECc
Confidence 23566777766666777777777777 4444444444
No 271
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=26.28 E-value=1.4e+02 Score=21.72 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=37.7
Q ss_pred CCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCC
Q 021177 17 DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (316)
Q Consensus 17 ~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g 67 (316)
+-++++|..+...-|.|.+|.+..+.-..=-|.+...+..+++..++.|+.
T Consensus 8 ~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 8 DEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 345788888889888999999955433344577889999999999987754
No 272
>PRK09890 cold shock protein CspG; Provisional
Probab=25.63 E-value=48 Score=22.35 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=12.6
Q ss_pred CCeeEEEeccCCCCCcEEEEEECC
Q 021177 31 GPIVDIDLKIPPRPPGYAFLEFED 54 (316)
Q Consensus 31 G~V~~i~i~~~~~~~g~aFVef~~ 54 (316)
|.|+.+.-. +|||||+=.+
T Consensus 7 G~Vk~f~~~-----kGfGFI~~~~ 25 (70)
T PRK09890 7 GLVKWFNAD-----KGFGFITPDD 25 (70)
T ss_pred EEEEEEECC-----CCcEEEecCC
Confidence 666655432 8999997653
No 273
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=25.45 E-value=2.5e+02 Score=20.65 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHH
Q 021177 21 REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (316)
Q Consensus 21 ~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~ 63 (316)
.+|..++..+|.-..-.........-||++++.|.+..-+++.
T Consensus 27 PE~~a~lk~agi~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAGIRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcCCceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 3577788888754443333333456799999996666555553
No 274
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=25.22 E-value=1.4e+02 Score=26.40 Aligned_cols=55 Identities=7% Similarity=0.094 Sum_probs=42.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC-----------CeEEEEEecCHHHHH
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-----------GMTGIVDYTSYDDMK 161 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~-----------~~~afV~f~~~~~A~ 161 (316)
...+.|...|+...++--.+-..|.+||.|+.++++.+.. .....+-|-+.+.+.
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 3456788899999999999999999999999999997761 125667777666544
No 275
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.21 E-value=1.4e+02 Score=28.63 Aligned_cols=59 Identities=22% Similarity=0.409 Sum_probs=43.3
Q ss_pred EEcCCCCCCCH---HHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceE
Q 021177 10 YVGNLPGDTRM---REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRL 75 (316)
Q Consensus 10 ~V~nLp~~~t~---~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l 75 (316)
.||||+.-... ..+..+=++||+|-.+++= ..-.|...+.+.|+.|+. -|+..+.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG------~~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG------SVPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec------CceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 46777554333 4466666799999988872 124677889999999998 77888888886
No 276
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=24.49 E-value=51 Score=22.17 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=11.6
Q ss_pred CCeeEEEeccCCCCCcEEEEEEC
Q 021177 31 GPIVDIDLKIPPRPPGYAFLEFE 53 (316)
Q Consensus 31 G~V~~i~i~~~~~~~g~aFVef~ 53 (316)
|.|+.+.-. +|||||+=.
T Consensus 7 G~Vk~f~~~-----kGfGFI~~~ 24 (70)
T PRK10354 7 GIVKWFNAD-----KGFGFITPD 24 (70)
T ss_pred EEEEEEeCC-----CCcEEEecC
Confidence 555554332 899999754
No 277
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=24.30 E-value=3.1e+02 Score=20.64 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=18.7
Q ss_pred CCCCCCHHHHHHHhhcCCCeeEEEec
Q 021177 14 LPGDTRMREVEDLFYKYGPIVDIDLK 39 (316)
Q Consensus 14 Lp~~~t~~~L~~~F~~~G~V~~i~i~ 39 (316)
||+-+++ |-+.|+.=|+|.+|...
T Consensus 11 lPPYTnK--LSDYfeSPGKI~svItv 34 (145)
T TIGR02542 11 LPPYTNK--LSDYFESPGKIQSVITV 34 (145)
T ss_pred cCCccch--hhHHhcCCCceEEEEEE
Confidence 6666554 88999999999997653
No 278
>PF15063 TC1: Thyroid cancer protein 1
Probab=23.24 E-value=52 Score=22.54 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.3
Q ss_pred EEcCCCCCCCHHHHHHHhhcCCCee
Q 021177 10 YVGNLPGDTRMREVEDLFYKYGPIV 34 (316)
Q Consensus 10 ~V~nLp~~~t~~~L~~~F~~~G~V~ 34 (316)
-+.||=.++..++|+.||..-|..+
T Consensus 29 asaNIFe~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 29 ASANIFENVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred hhhhhhhccCHHHHHHHHHHccchh
Confidence 3678888999999999999999654
No 279
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=22.46 E-value=4.2e+02 Score=26.04 Aligned_cols=96 Identities=11% Similarity=0.087 Sum_probs=61.4
Q ss_pred cEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCCCCCCCCCCCCCCCCCCCC----CCCCCCCceEEEeCCCCCC
Q 021177 46 GYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSR----GVSRRSDYRVLVTGLPSSA 121 (316)
Q Consensus 46 g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~V~nl~~~~ 121 (316)
--|||++.++...+-..+.|+-..+.+-.|. ..+++-.+.-.++-..+...... .|.-.....+|+.+|+...
T Consensus 237 i~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ie---g~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSl 313 (621)
T COG0445 237 IPCYITYTNEKTHEIIRDNLHRSPMYSGEIE---GVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSL 313 (621)
T ss_pred cceeeecCChHHHHHHHHhhhhCchhccccc---ccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccC
Confidence 3699999999888877777776555443332 11222222222222333333322 2333456799999999999
Q ss_pred CHHHHHHHHhhcCCeEEEEEeec
Q 021177 122 SWQDLKDHMRRAGDVCFSQVFRD 144 (316)
Q Consensus 122 t~~~l~~~f~~~G~v~~~~~~~~ 144 (316)
.++.-.++....-..+++.+.+.
T Consensus 314 P~dVQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 314 PEDVQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred CHHHHHHHHHhCcccccceeecc
Confidence 98888888888888888888875
No 280
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=22.46 E-value=32 Score=23.07 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=18.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFY 28 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~ 28 (316)
.-++++|||+||..+-+++=..++.
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHH
Confidence 3578999999999877766444443
No 281
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=22.31 E-value=38 Score=31.12 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=44.7
Q ss_pred CCCeEEEcCCCCCCCHH--------HHHHHhhc--CCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHH
Q 021177 5 SSRTLYVGNLPGDTRMR--------EVEDLFYK--YGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIR 63 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~--------~L~~~F~~--~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~ 63 (316)
..+.+|+.++....+.+ ++...|.. .+.+..+.+.. .....|..|++|...+.|+++..
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 44567777777665555 89999999 67777777733 44667889999999999998774
No 282
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=21.59 E-value=2.7e+02 Score=19.85 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=23.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-CC-CeeEEEe
Q 021177 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDL 38 (316)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~-~G-~V~~i~i 38 (316)
..|+-.++..+|..||++.|+. || +|..|..
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT 53 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNT 53 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEE
Confidence 4566677899999999999987 44 5555555
No 283
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=21.58 E-value=72 Score=20.75 Aligned_cols=10 Identities=30% Similarity=0.830 Sum_probs=8.5
Q ss_pred CcEEEEEECC
Q 021177 45 PGYAFLEFED 54 (316)
Q Consensus 45 ~g~aFVef~~ 54 (316)
+|||||.=.+
T Consensus 12 kGfGFI~~~~ 21 (65)
T cd04458 12 KGFGFITPDD 21 (65)
T ss_pred CCeEEEecCC
Confidence 8999998776
No 284
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=21.47 E-value=1.2e+02 Score=26.52 Aligned_cols=32 Identities=25% Similarity=0.101 Sum_probs=25.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEe
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i 38 (316)
....|+|||+++|-.-|..+++..-.+..+.+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 45789999999999999999988766644444
No 285
>PRK02302 hypothetical protein; Provisional
Probab=21.40 E-value=2e+02 Score=20.51 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=26.7
Q ss_pred hhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcc
Q 021177 27 FYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 69 (316)
Q Consensus 27 F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~ 69 (316)
+.+||.|..+--. ..|+.+ |-+.++|+..++.|....
T Consensus 23 LrkfG~I~Y~Skk-----~kYvvl-Yvn~~~~e~~~~kl~~l~ 59 (89)
T PRK02302 23 LSKYGDIVYHSKR-----SRYLVL-YVNKEDVEQKLEELSKLK 59 (89)
T ss_pred HhhcCcEEEEecc-----ccEEEE-EECHHHHHHHHHHHhcCC
Confidence 4789999886532 346654 779999999988776543
No 286
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=21.12 E-value=2.1e+02 Score=23.78 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=36.7
Q ss_pred CCHHHHHHHhhcCCC---eeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccC
Q 021177 18 TRMREVEDLFYKYGP---IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (316)
Q Consensus 18 ~t~~~L~~~F~~~G~---V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~ 71 (316)
.|.+++.+....+|. |....+..-|+.++=+...-.++++|..+...|-|+.+.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 467788877777663 555555555566663443455889999999888888775
No 287
>PRK02886 hypothetical protein; Provisional
Probab=20.59 E-value=2.2e+02 Score=20.27 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=26.8
Q ss_pred hhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcc
Q 021177 27 FYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 69 (316)
Q Consensus 27 F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~ 69 (316)
+..||.|..+--. ..|+.+ |-+.++|+..++.|....
T Consensus 21 LrkyG~I~Y~Skr-----~kYvvl-Yvn~~~~e~~~~kl~~l~ 57 (87)
T PRK02886 21 LRKFGNVHYVSKR-----LKYAVL-YCDMEQVEDIMNKLSSLP 57 (87)
T ss_pred HhhcCcEEEEecc-----ccEEEE-EECHHHHHHHHHHHhcCC
Confidence 4789999886542 346654 779999999988776643
Done!