Query 021177
Match_columns 316
No_of_seqs 306 out of 2947
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 13:53:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 9.4E-33 3.2E-37 233.1 18.0 165 3-189 12-181 (213)
2 3tyt_A Heterogeneous nuclear r 100.0 1.9E-31 6.4E-36 223.3 21.3 180 4-185 2-203 (205)
3 3md3_A Nuclear and cytoplasmic 100.0 3E-31 1E-35 214.5 20.7 159 7-187 1-165 (166)
4 1fxl_A Paraneoplastic encephal 100.0 3.1E-31 1E-35 214.6 19.8 152 5-176 1-159 (167)
5 1b7f_A Protein (SXL-lethal pro 100.0 7.1E-31 2.4E-35 212.8 21.2 150 5-174 2-158 (168)
6 1l3k_A Heterogeneous nuclear r 100.0 6E-31 2E-35 218.7 20.0 167 4-190 11-184 (196)
7 3pgw_A U1-A; protein-RNA compl 100.0 6.1E-30 2.1E-34 224.9 24.9 180 3-187 6-281 (282)
8 2yh0_A Splicing factor U2AF 65 100.0 8.7E-30 3E-34 212.1 23.4 178 4-189 2-194 (198)
9 3nmr_A Cugbp ELAV-like family 100.0 6.5E-30 2.2E-34 208.5 18.9 162 5-186 2-174 (175)
10 2qfj_A FBP-interacting repress 100.0 1E-29 3.4E-34 214.6 20.6 173 5-190 27-206 (216)
11 2g4b_A Splicing factor U2AF 65 100.0 1.6E-29 5.4E-34 205.8 19.6 155 4-186 2-171 (172)
12 2cjk_A Nuclear polyadenylated 100.0 1.9E-30 6.5E-35 210.2 13.1 158 4-188 1-165 (167)
13 2adc_A Polypyrimidine tract-bi 100.0 2.9E-29 9.8E-34 214.0 20.9 179 3-188 31-227 (229)
14 1fje_B Nucleolin RBD12, protei 100.0 1.7E-30 5.8E-35 212.3 12.4 162 3-188 10-173 (175)
15 1qm9_A Polypyrimidine tract-bi 100.0 3.6E-29 1.2E-33 208.6 19.3 176 5-187 2-195 (198)
16 3sde_A Paraspeckle component 1 100.0 2.8E-28 9.7E-33 211.9 18.5 157 4-189 20-179 (261)
17 3smz_A Protein raver-1, ribonu 100.0 5.9E-28 2E-32 212.4 20.7 166 4-190 93-265 (284)
18 3smz_A Protein raver-1, ribonu 100.0 1.6E-27 5.6E-32 209.6 21.4 151 4-188 20-174 (284)
19 2ghp_A U4/U6 snRNA-associated 100.0 7.8E-28 2.7E-32 212.5 19.1 166 5-188 116-290 (292)
20 2ghp_A U4/U6 snRNA-associated 100.0 2.5E-27 8.6E-32 209.2 18.9 153 4-188 39-196 (292)
21 4f25_A Polyadenylate-binding p 99.9 4.6E-23 1.6E-27 156.4 9.3 108 5-124 4-112 (115)
22 3pgw_S U1-70K; protein-RNA com 99.9 8.3E-21 2.8E-25 175.6 19.4 82 4-85 100-184 (437)
23 3lqv_A PRE-mRNA branch site pr 99.9 1.1E-21 3.8E-26 148.7 9.1 106 2-135 4-109 (115)
24 4fxv_A ELAV-like protein 1; RN 99.9 2.2E-21 7.6E-26 142.9 9.9 78 5-82 18-98 (99)
25 3s8s_A Histone-lysine N-methyl 99.8 2.8E-20 9.6E-25 139.6 10.2 81 3-83 3-86 (110)
26 1x4a_A Splicing factor, argini 99.8 5E-20 1.7E-24 138.2 11.4 83 2-84 18-100 (109)
27 2fy1_A RNA-binding motif prote 99.8 1.1E-19 3.7E-24 137.8 12.8 85 1-85 2-88 (116)
28 2hvz_A Splicing factor, argini 99.8 2.4E-20 8.3E-25 138.0 8.6 100 7-118 1-100 (101)
29 2lxi_A RNA-binding protein 10; 99.8 1.8E-20 6.2E-25 135.8 7.5 79 6-84 1-84 (91)
30 1whw_A Hypothetical protein ri 99.8 1.9E-19 6.4E-24 132.6 13.0 83 3-85 5-90 (99)
31 1sjq_A Polypyrimidine tract-bi 99.8 4.1E-20 1.4E-24 136.2 9.2 82 2-86 12-95 (105)
32 3r27_A HnRNP L, heterogeneous 99.8 8.2E-20 2.8E-24 133.2 10.1 79 3-84 18-98 (100)
33 2dnz_A Probable RNA-binding pr 99.8 2.6E-19 8.9E-24 130.8 12.6 82 3-84 2-86 (95)
34 2a3j_A U1 small nuclear ribonu 99.8 1.1E-19 3.7E-24 139.6 10.9 81 3-83 26-110 (127)
35 2cpf_A RNA binding motif prote 99.8 9E-20 3.1E-24 134.1 10.0 83 3-85 2-90 (98)
36 2x1f_A MRNA 3'-END-processing 99.8 1.3E-19 4.6E-24 132.6 10.7 80 5-84 1-83 (96)
37 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.2E-19 4.1E-24 129.7 9.9 79 3-81 4-85 (85)
38 1x5t_A Splicing factor 3B subu 99.8 1.7E-19 5.9E-24 132.0 10.9 83 3-85 2-88 (96)
39 2dgs_A DAZ-associated protein 99.8 3.5E-19 1.2E-23 131.2 12.5 82 3-85 7-91 (99)
40 2dgo_A Cytotoxic granule-assoc 99.8 4E-19 1.4E-23 134.6 13.1 84 3-86 12-98 (115)
41 2wbr_A GW182, gawky, LD47780P; 99.8 1.1E-19 3.9E-24 127.8 9.1 75 4-81 5-79 (89)
42 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.8E-19 1.3E-23 132.0 12.5 83 3-85 12-95 (103)
43 1x5u_A Splicing factor 3B subu 99.8 3.7E-19 1.3E-23 132.5 12.3 83 3-85 12-97 (105)
44 2kn4_A Immunoglobulin G-bindin 99.8 6.1E-19 2.1E-23 141.2 14.4 138 42-190 10-151 (158)
45 2dgv_A HnRNP M, heterogeneous 99.8 1.6E-19 5.4E-24 131.1 9.9 83 2-84 4-87 (92)
46 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.1E-19 3.8E-24 130.5 9.0 80 3-82 3-85 (87)
47 2dnm_A SRP46 splicing factor; 99.8 2.2E-19 7.5E-24 133.3 10.9 83 3-85 10-95 (103)
48 1nu4_A U1A RNA binding domain; 99.8 5.6E-20 1.9E-24 134.9 7.5 84 1-84 3-90 (97)
49 2ad9_A Polypyrimidine tract-bi 99.8 1.8E-19 6E-24 136.1 10.3 82 3-87 28-111 (119)
50 1x4d_A Matrin 3; structural ge 99.8 8.5E-20 2.9E-24 134.4 8.4 79 3-84 12-93 (102)
51 3pgw_S U1-70K; protein-RNA com 99.8 4.3E-19 1.5E-23 164.2 15.1 159 23-188 9-181 (437)
52 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.1E-19 7.1E-24 133.1 10.2 82 4-85 10-94 (102)
53 2div_A TRNA selenocysteine ass 99.8 1.5E-19 5.3E-24 133.1 9.5 83 2-84 5-95 (99)
54 2e5h_A Zinc finger CCHC-type a 99.8 3.2E-19 1.1E-23 130.0 11.0 78 4-81 14-94 (94)
55 2lkz_A RNA-binding protein 5; 99.8 8.3E-20 2.8E-24 133.0 7.8 79 4-82 7-94 (95)
56 2do0_A HnRNP M, heterogeneous 99.8 5.3E-19 1.8E-23 133.6 12.4 83 3-85 12-96 (114)
57 2i2y_A Fusion protein consists 99.8 4.2E-19 1.4E-23 140.9 12.3 138 42-189 10-148 (150)
58 2do4_A Squamous cell carcinoma 99.8 2.9E-19 1E-23 131.8 10.6 82 3-84 14-97 (100)
59 3md1_A Nuclear and cytoplasmic 99.8 2.3E-19 7.8E-24 127.7 9.6 78 6-83 1-81 (83)
60 2cq1_A PTB-like protein L; RRM 99.8 3.8E-19 1.3E-23 131.0 11.0 80 3-85 12-93 (101)
61 1x5s_A Cold-inducible RNA-bind 99.8 3.4E-19 1.2E-23 132.0 10.8 83 3-85 9-94 (102)
62 2d9p_A Polyadenylate-binding p 99.8 3.2E-19 1.1E-23 132.4 10.6 83 3-85 12-95 (103)
63 2cq0_A Eukaryotic translation 99.8 2.4E-19 8.2E-24 133.0 9.9 82 3-84 12-96 (103)
64 2dgu_A Heterogeneous nuclear r 99.8 7.7E-19 2.6E-23 130.3 12.5 78 4-86 9-86 (103)
65 2dgx_A KIAA0430 protein; RRM d 99.8 4.2E-19 1.4E-23 130.0 10.9 81 4-84 7-91 (96)
66 1wex_A Hypothetical protein (r 99.8 4.3E-19 1.5E-23 131.5 11.1 80 3-85 12-93 (104)
67 2cq3_A RNA-binding protein 9; 99.8 9.7E-19 3.3E-23 129.7 12.9 83 3-85 12-95 (103)
68 2cqd_A RNA-binding region cont 99.8 1.5E-18 5E-23 131.6 14.1 81 3-84 14-97 (116)
69 2cph_A RNA binding motif prote 99.8 8E-19 2.7E-23 131.1 12.1 83 3-85 12-99 (107)
70 2dnq_A RNA-binding protein 4B; 99.8 7.5E-19 2.6E-23 127.0 11.2 78 3-85 5-82 (90)
71 1p27_B RNA-binding protein 8A; 99.8 3.5E-19 1.2E-23 132.9 9.5 81 4-84 21-104 (106)
72 2dnh_A Bruno-like 5, RNA bindi 99.8 5.7E-19 1.9E-23 131.5 10.6 82 4-85 13-99 (105)
73 4a8x_A RNA-binding protein wit 99.8 5.3E-19 1.8E-23 127.2 10.1 81 4-84 2-86 (88)
74 2ywk_A Putative RNA-binding pr 99.8 2.6E-19 9E-24 130.8 8.6 80 3-82 13-94 (95)
75 2cqc_A Arginine/serine-rich sp 99.8 3E-19 1E-23 130.4 8.8 80 3-82 12-94 (95)
76 2cpz_A CUG triplet repeat RNA- 99.8 3.9E-19 1.3E-23 134.6 9.7 82 4-85 23-107 (115)
77 1wi8_A EIF-4B, eukaryotic tran 99.8 6.7E-19 2.3E-23 130.9 10.6 81 3-85 12-96 (104)
78 1x4h_A RNA-binding protein 28; 99.8 1.1E-18 3.9E-23 131.1 11.9 82 4-85 13-103 (111)
79 1oo0_B CG8781-PA, drosophila Y 99.8 5.5E-19 1.9E-23 132.7 10.1 81 4-84 24-107 (110)
80 2dgt_A RNA-binding protein 30; 99.8 1.2E-18 4E-23 126.6 11.4 78 3-85 7-84 (92)
81 1s79_A Lupus LA protein; RRM, 99.8 4.2E-19 1.4E-23 131.5 9.0 78 4-82 9-88 (103)
82 3ns6_A Eukaryotic translation 99.8 1.7E-19 5.8E-24 133.1 6.5 80 3-82 3-92 (100)
83 2dgp_A Bruno-like 4, RNA bindi 99.8 7.7E-19 2.6E-23 131.0 10.2 83 3-85 10-98 (106)
84 1x4c_A Splicing factor, argini 99.8 2.8E-18 9.6E-23 128.4 13.2 77 4-84 13-94 (108)
85 3p5t_L Cleavage and polyadenyl 99.8 9.1E-20 3.1E-24 131.9 4.8 78 7-84 2-84 (90)
86 2dnp_A RNA-binding protein 14; 99.8 1E-18 3.5E-23 126.3 10.4 77 3-84 6-82 (90)
87 1why_A Hypothetical protein ri 99.8 1.1E-18 3.6E-23 128.1 10.5 79 3-84 14-94 (97)
88 2kxn_B Transformer-2 protein h 99.8 4.7E-19 1.6E-23 136.8 9.0 82 3-84 43-127 (129)
89 2dng_A Eukaryotic translation 99.8 1.2E-18 4.1E-23 129.2 10.7 81 3-85 12-95 (103)
90 3s7r_A Heterogeneous nuclear r 99.8 1.2E-18 4.1E-23 125.1 10.4 77 3-80 8-87 (87)
91 2khc_A Testis-specific RNP-typ 99.8 6.6E-19 2.3E-23 134.0 9.5 79 3-81 37-118 (118)
92 3ucg_A Polyadenylate-binding p 99.8 1.3E-18 4.3E-23 125.5 10.4 78 5-83 5-85 (89)
93 3ulh_A THO complex subunit 4; 99.8 7.3E-19 2.5E-23 131.3 9.3 79 3-81 26-106 (107)
94 2jrs_A RNA-binding protein 39; 99.8 5.9E-19 2E-23 132.0 8.9 81 3-83 23-106 (108)
95 2nlw_A Eukaryotic translation 99.8 1.2E-18 4E-23 129.8 10.3 80 4-83 13-100 (105)
96 2la6_A RNA-binding protein FUS 99.8 8.2E-19 2.8E-23 129.2 9.3 79 3-81 10-99 (99)
97 2krb_A Eukaryotic translation 99.8 4.7E-19 1.6E-23 125.5 7.5 72 6-77 1-80 (81)
98 3ex7_B RNA-binding protein 8A; 99.8 1.1E-18 3.6E-23 134.4 10.2 83 4-86 20-105 (126)
99 2jvr_A Nucleolar protein 3; RN 99.8 8.6E-19 3E-23 131.2 9.3 79 4-83 26-105 (111)
100 2xnq_A Nuclear polyadenylated 99.8 1.8E-18 6.2E-23 126.8 10.7 76 3-83 19-95 (97)
101 2err_A Ataxin-2-binding protei 99.8 1E-18 3.5E-23 131.0 9.5 81 3-83 26-107 (109)
102 2dis_A Unnamed protein product 99.8 3.3E-18 1.1E-22 128.2 12.3 83 3-85 5-94 (109)
103 2dhg_A TRNA selenocysteine ass 99.8 1.2E-18 4.1E-23 129.5 9.7 82 3-84 6-91 (104)
104 1u6f_A Tcubp1, RNA-binding pro 99.8 2.4E-18 8.3E-23 134.7 11.8 83 3-85 39-124 (139)
105 2cpe_A RNA-binding protein EWS 99.8 1.4E-18 4.9E-23 131.1 10.1 83 3-85 12-105 (113)
106 2cpi_A CCR4-NOT transcription 99.8 5E-19 1.7E-23 133.1 7.4 81 4-84 13-102 (111)
107 1x4f_A Matrin 3; structural ge 99.8 4E-19 1.4E-23 132.7 6.6 80 2-84 21-103 (112)
108 1x4e_A RNA binding motif, sing 99.8 2.2E-19 7.5E-24 128.4 4.9 79 3-81 2-83 (85)
109 2fc9_A NCL protein; structure 99.8 2.2E-18 7.5E-23 127.3 10.4 80 4-84 13-92 (101)
110 2cq2_A Hypothetical protein LO 99.8 1.8E-18 6.2E-23 129.2 9.9 80 2-84 21-107 (114)
111 2ytc_A PRE-mRNA-splicing facto 99.8 1.9E-18 6.4E-23 123.5 9.4 76 3-81 9-85 (85)
112 2rs2_A Musashi-1, RNA-binding 99.8 3.5E-18 1.2E-22 128.0 11.2 80 4-84 23-105 (109)
113 2cpj_A Non-POU domain-containi 99.8 2E-18 6.8E-23 127.1 9.6 78 4-84 13-90 (99)
114 1x4g_A Nucleolysin TIAR; struc 99.8 3.3E-18 1.1E-22 128.2 10.9 78 4-84 23-100 (109)
115 2kvi_A Nuclear polyadenylated 99.8 1.3E-18 4.5E-23 127.3 8.5 77 3-84 7-84 (96)
116 2cpx_A Hypothetical protein FL 99.8 1.9E-18 6.7E-23 130.7 9.7 81 4-85 23-107 (115)
117 2kt5_A RNA and export factor-b 99.8 3.5E-18 1.2E-22 131.1 11.2 82 4-85 33-116 (124)
118 2mss_A Protein (musashi1); RNA 99.8 1E-18 3.5E-23 121.8 7.5 72 8-80 1-75 (75)
119 2dh8_A DAZ-associated protein 99.8 1.2E-18 4E-23 129.7 8.2 82 3-85 13-97 (105)
120 2jvo_A Nucleolar protein 3; nu 99.8 1.9E-18 6.4E-23 129.2 9.3 77 3-84 28-104 (108)
121 2cpd_A Apobec-1 stimulating pr 99.8 6.3E-18 2.2E-22 124.4 11.9 76 4-84 13-90 (99)
122 3n9u_C Cleavage and polyadenyl 99.8 2E-18 6.7E-23 137.6 9.8 78 5-82 54-136 (156)
123 2cqp_A RNA-binding protein 12; 99.8 8.6E-19 2.9E-23 128.8 7.0 80 4-83 13-95 (98)
124 2e5j_A Methenyltetrahydrofolat 99.8 1.6E-18 5.5E-23 127.1 8.4 79 4-84 17-95 (97)
125 1p1t_A Cleavage stimulation fa 99.8 1.6E-18 5.6E-23 128.7 8.2 81 4-84 6-89 (104)
126 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.5E-18 1.5E-22 135.9 11.2 82 4-85 37-121 (156)
127 2cqh_A IGF-II mRNA-binding pro 99.8 2.3E-18 7.8E-23 125.2 8.7 79 2-84 4-84 (93)
128 1whx_A Hypothetical protein ri 99.8 2.7E-18 9.3E-23 129.0 9.2 78 4-84 8-85 (111)
129 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.5E-18 5.1E-23 128.0 7.6 78 4-83 17-98 (100)
130 1fjc_A Nucleolin RBD2, protein 99.8 1.1E-18 3.7E-23 127.7 6.7 79 4-84 14-92 (96)
131 2la4_A Nuclear and cytoplasmic 99.8 1.7E-18 5.9E-23 127.9 7.7 76 4-82 25-100 (101)
132 2m2b_A RNA-binding protein 10; 99.8 2.2E-18 7.6E-23 133.5 8.5 81 3-84 20-109 (131)
133 2ek1_A RNA-binding protein 12; 99.7 7.6E-19 2.6E-23 128.3 5.4 79 4-82 13-94 (95)
134 2cq4_A RNA binding motif prote 99.7 3.7E-18 1.3E-22 129.0 9.3 78 5-83 24-104 (114)
135 2kn4_A Immunoglobulin G-bindin 99.7 8.8E-18 3E-22 134.4 12.0 82 4-85 68-152 (158)
136 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.7E-18 5.8E-23 121.3 6.8 73 7-80 1-76 (77)
137 2lea_A Serine/arginine-rich sp 99.7 1.9E-18 6.6E-23 134.5 7.8 82 4-85 45-129 (135)
138 2dgw_A Probable RNA-binding pr 99.7 6.4E-18 2.2E-22 122.3 10.0 79 3-83 7-87 (91)
139 1wf1_A RNA-binding protein RAL 99.7 5E-18 1.7E-22 127.4 9.6 75 5-84 26-101 (110)
140 2jwn_A Embryonic polyadenylate 99.7 6.7E-18 2.3E-22 129.5 10.4 79 5-84 35-116 (124)
141 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 7E-18 2.4E-22 132.2 10.6 78 3-80 60-140 (140)
142 2fc8_A NCL protein; structure 99.7 3.6E-18 1.2E-22 126.4 8.4 82 3-84 12-93 (102)
143 1wg5_A Heterogeneous nuclear r 99.7 7.1E-18 2.4E-22 125.3 9.9 80 4-84 13-95 (104)
144 2cqg_A TDP-43, TAR DNA-binding 99.7 1.1E-17 3.8E-22 124.0 10.8 81 3-85 12-95 (103)
145 3beg_B Splicing factor, argini 99.7 5.5E-18 1.9E-22 128.2 9.3 80 106-188 13-93 (115)
146 2ki2_A SS-DNA binding protein 99.7 1E-18 3.4E-23 126.3 4.9 77 7-84 2-81 (90)
147 3egn_A RNA-binding protein 40; 99.7 2.4E-18 8.1E-23 135.5 7.4 82 3-84 42-131 (143)
148 2cpy_A RNA-binding protein 12; 99.7 4.1E-18 1.4E-22 128.8 8.3 80 3-83 12-94 (114)
149 1wg1_A KIAA1579 protein, homol 99.7 3.9E-18 1.3E-22 122.7 7.6 78 3-84 2-79 (88)
150 1rk8_A CG8781-PA, CG8781-PA pr 99.7 6.4E-18 2.2E-22 136.3 9.3 82 4-85 70-154 (165)
151 1x4b_A Heterogeneous nuclear r 99.7 1.3E-17 4.6E-22 126.3 10.6 80 5-85 26-108 (116)
152 1x5o_A RNA binding motif, sing 99.7 9.2E-18 3.2E-22 126.8 9.1 79 4-82 23-111 (114)
153 1iqt_A AUF1, heterogeneous nuc 99.7 3.8E-18 1.3E-22 118.9 6.3 72 8-80 1-75 (75)
154 1fj7_A Nucleolin RBD1, protein 99.7 1.1E-18 3.8E-23 128.9 3.7 80 4-84 15-96 (101)
155 1wez_A HnRNP H', FTP-3, hetero 99.7 6.9E-18 2.3E-22 124.8 7.9 80 3-84 12-93 (102)
156 1x5p_A Negative elongation fac 99.7 3.4E-17 1.2E-21 119.9 11.6 76 4-84 13-88 (97)
157 2i2y_A Fusion protein consists 99.7 9.9E-18 3.4E-22 133.0 9.3 78 4-83 71-148 (150)
158 2e5g_A U6 snRNA-specific termi 99.7 2.3E-17 7.8E-22 120.2 10.5 78 3-84 5-83 (94)
159 1x4c_A Splicing factor, argini 99.7 9.6E-17 3.3E-21 120.0 14.1 83 103-188 9-92 (108)
160 2db1_A Heterogeneous nuclear r 99.7 5.6E-18 1.9E-22 128.8 6.9 78 4-82 15-97 (118)
161 2diu_A KIAA0430 protein; struc 99.7 1.8E-17 6.1E-22 117.7 8.9 74 4-84 6-85 (96)
162 3beg_B Splicing factor, argini 99.7 1.4E-17 4.6E-22 126.0 8.3 75 4-82 14-93 (115)
163 2hgl_A HNRPF protein, heteroge 99.7 9.2E-18 3.2E-22 130.3 7.0 78 4-82 42-124 (136)
164 1wel_A RNA-binding protein 12; 99.7 1.3E-17 4.6E-22 127.8 7.8 78 4-82 23-103 (124)
165 2f3j_A RNA and export factor b 99.7 2.6E-17 8.7E-22 134.0 9.9 81 4-84 86-168 (177)
166 2e44_A Insulin-like growth fac 99.7 3.6E-17 1.2E-21 119.6 9.6 79 4-83 13-92 (96)
167 1sjr_A Polypyrimidine tract-bi 99.7 4.6E-17 1.6E-21 129.1 10.5 77 7-84 47-125 (164)
168 3q2s_C Cleavage and polyadenyl 99.7 2.2E-17 7.7E-22 139.9 8.9 78 5-82 67-149 (229)
169 2lmi_A GRSF-1, G-rich sequence 99.7 1.1E-17 3.8E-22 124.9 6.2 79 3-82 8-91 (107)
170 3zzy_A Polypyrimidine tract-bi 99.7 4.8E-17 1.6E-21 124.3 9.7 76 8-85 30-108 (130)
171 2dnn_A RNA-binding protein 12; 99.7 5.7E-17 1.9E-21 121.0 9.9 75 6-82 16-92 (109)
172 2hzc_A Splicing factor U2AF 65 99.7 3.4E-17 1.2E-21 117.4 8.3 74 2-79 2-86 (87)
173 1wf0_A TDP-43, TAR DNA-binding 99.7 3.7E-17 1.3E-21 117.5 7.7 79 2-84 1-79 (88)
174 3d2w_A TAR DNA-binding protein 99.7 7.1E-17 2.4E-21 116.2 9.0 76 3-84 8-85 (89)
175 2dha_A FLJ20171 protein; RRM d 99.7 1.1E-17 3.8E-22 127.5 5.0 79 3-82 20-104 (123)
176 2xs2_A Deleted in azoospermia- 99.7 1.8E-17 6.1E-22 122.6 5.6 79 4-84 7-87 (102)
177 2e5i_A Heterogeneous nuclear r 99.7 1.1E-16 3.9E-21 121.7 10.0 77 5-84 22-103 (124)
178 2hgn_A Heterogeneous nuclear r 99.7 1.8E-17 6.3E-22 129.0 5.7 79 4-84 44-124 (139)
179 2lcw_A RNA-binding protein FUS 99.5 2E-18 6.9E-23 130.9 0.0 82 3-84 4-96 (116)
180 2hgm_A HNRPF protein, heteroge 99.7 9.3E-17 3.2E-21 122.7 8.7 77 4-82 40-120 (126)
181 2dnl_A Cytoplasmic polyadenyla 99.7 2.9E-16 9.8E-21 118.6 10.8 75 3-80 5-85 (114)
182 2bz2_A Negative elongation fac 99.7 1.5E-16 5.3E-21 121.2 9.2 76 4-84 37-112 (121)
183 2pe8_A Splicing factor 45; RRM 99.7 2.3E-16 7.8E-21 116.9 9.5 80 3-82 5-93 (105)
184 1rk8_A CG8781-PA, CG8781-PA pr 99.7 5E-16 1.7E-20 125.1 11.9 135 50-189 11-152 (165)
185 3md3_A Nuclear and cytoplasmic 99.7 2.9E-16 9.9E-21 126.0 9.8 79 3-81 84-165 (166)
186 2qfj_A FBP-interacting repress 99.7 4.5E-16 1.5E-20 130.6 10.8 81 4-84 123-206 (216)
187 2j8a_A Histone-lysine N-methyl 99.7 2.1E-16 7E-21 118.7 7.5 78 6-83 2-96 (136)
188 4f02_A Polyadenylate-binding p 99.6 3E-16 1E-20 131.7 9.0 79 5-83 102-181 (213)
189 2lea_A Serine/arginine-rich sp 99.6 4E-16 1.4E-20 121.3 7.7 120 45-189 4-127 (135)
190 2cjk_A Nuclear polyadenylated 99.6 3.9E-16 1.3E-20 125.6 7.7 78 5-83 86-166 (167)
191 2g4b_A Splicing factor U2AF 65 99.6 5.6E-16 1.9E-20 125.3 8.6 76 5-80 93-171 (172)
192 1fje_B Nucleolin RBD12, protei 99.6 5.4E-16 1.8E-20 125.9 8.3 77 4-82 97-173 (175)
193 2yh0_A Splicing factor U2AF 65 99.6 8.9E-16 3.1E-20 127.0 9.7 81 4-84 112-195 (198)
194 4fxv_A ELAV-like protein 1; RN 99.6 3.3E-15 1.1E-19 109.6 11.5 76 109-188 19-98 (99)
195 2jvr_A Nucleolar protein 3; RN 99.6 1.3E-15 4.5E-20 113.8 9.4 79 107-189 26-105 (111)
196 2dit_A HIV TAT specific factor 99.6 2.6E-15 8.8E-20 112.9 10.3 81 3-84 12-103 (112)
197 3u1l_A PRE-mRNA-splicing facto 99.6 7.5E-16 2.6E-20 130.1 8.0 78 4-84 132-230 (240)
198 1b7f_A Protein (SXL-lethal pro 99.6 1.8E-15 6E-20 121.8 9.6 77 4-80 87-168 (168)
199 1l3k_A Heterogeneous nuclear r 99.6 2E-15 6.7E-20 124.7 9.8 80 5-85 103-185 (196)
200 2fy1_A RNA-binding motif prote 99.6 9.3E-15 3.2E-19 110.5 12.6 80 107-190 5-87 (116)
201 3ex7_B RNA-binding protein 8A; 99.6 3.5E-15 1.2E-19 114.6 10.2 81 106-190 19-103 (126)
202 3nmr_A Cugbp ELAV-like family 99.6 1.6E-15 5.4E-20 122.9 8.6 77 5-81 94-175 (175)
203 3v4m_A Splicing factor U2AF 65 99.6 2.5E-15 8.6E-20 111.3 8.8 81 2-82 1-96 (105)
204 2voo_A Lupus LA protein; RNA-b 99.6 2.7E-15 9.1E-20 123.8 9.6 76 6-82 109-186 (193)
205 1fxl_A Paraneoplastic encephal 99.6 3.2E-15 1.1E-19 120.0 9.3 76 5-80 87-167 (167)
206 2cqi_A Nucleolysin TIAR; RNA r 99.6 5.3E-14 1.8E-18 104.0 14.6 82 105-190 11-94 (103)
207 4f25_A Polyadenylate-binding p 99.6 1.6E-14 5.6E-19 109.0 11.3 77 109-189 5-83 (115)
208 3pgw_A U1-A; protein-RNA compl 99.6 8E-15 2.7E-19 128.2 10.9 76 4-81 205-281 (282)
209 2dnm_A SRP46 splicing factor; 99.6 1.8E-14 6.3E-19 106.5 11.0 84 103-190 7-94 (103)
210 1x4a_A Splicing factor, argini 99.6 4.5E-14 1.5E-18 105.5 13.1 83 104-190 17-100 (109)
211 2cq3_A RNA-binding protein 9; 99.6 8.1E-14 2.8E-18 103.0 14.3 82 105-190 11-94 (103)
212 3s8s_A Histone-lysine N-methyl 99.6 2.6E-14 8.9E-19 106.9 11.7 78 108-189 5-86 (110)
213 1whw_A Hypothetical protein ri 99.6 5E-14 1.7E-18 103.3 12.8 81 107-191 6-90 (99)
214 2wbr_A GW182, gawky, LD47780P; 99.6 2.5E-14 8.7E-19 100.6 10.4 73 108-186 6-78 (89)
215 2do0_A HnRNP M, heterogeneous 99.6 1.3E-13 4.5E-18 103.8 15.2 81 105-189 11-94 (114)
216 2cq0_A Eukaryotic translation 99.6 5.2E-14 1.8E-18 104.0 12.7 82 105-190 11-96 (103)
217 1x5s_A Cold-inducible RNA-bind 99.6 3.6E-14 1.2E-18 104.6 11.6 82 105-190 8-93 (102)
218 2cqb_A Peptidyl-prolyl CIS-tra 99.6 3.3E-14 1.1E-18 104.9 11.3 81 106-190 9-93 (102)
219 2d9p_A Polyadenylate-binding p 99.6 4E-14 1.4E-18 104.6 11.8 82 105-190 11-94 (103)
220 2dgo_A Cytotoxic granule-assoc 99.6 2.2E-13 7.4E-18 102.7 16.0 82 105-190 11-96 (115)
221 1qm9_A Polypyrimidine tract-bi 99.6 7.7E-15 2.6E-19 121.5 8.5 77 4-82 118-196 (198)
222 2dgs_A DAZ-associated protein 99.6 5.5E-14 1.9E-18 103.1 12.1 81 105-190 6-90 (99)
223 2dgx_A KIAA0430 protein; RRM d 99.6 5.2E-14 1.8E-18 102.6 11.8 80 106-189 6-90 (96)
224 2dnq_A RNA-binding protein 4B; 99.6 6.1E-14 2.1E-18 101.0 12.0 76 107-190 6-81 (90)
225 3tyt_A Heterogeneous nuclear r 99.5 6.5E-15 2.2E-19 122.7 7.5 77 4-80 121-204 (205)
226 1sjq_A Polypyrimidine tract-bi 99.5 2.9E-14 1E-18 104.8 9.9 77 107-189 14-92 (105)
227 2dgt_A RNA-binding protein 30; 99.5 1.1E-13 3.6E-18 100.1 12.9 78 105-190 6-83 (92)
228 2adc_A Polypyrimidine tract-bi 99.5 2E-14 7E-19 121.9 10.5 77 4-82 149-227 (229)
229 2dnz_A Probable RNA-binding pr 99.5 6.4E-14 2.2E-18 101.9 11.7 79 108-190 4-86 (95)
230 2do4_A Squamous cell carcinoma 99.5 1.4E-13 4.7E-18 101.1 13.6 81 106-190 14-97 (100)
231 2cqc_A Arginine/serine-rich sp 99.5 1.1E-13 3.9E-18 100.5 12.9 80 104-187 10-93 (95)
232 2cpz_A CUG triplet repeat RNA- 99.5 1.8E-13 6.3E-18 103.1 14.5 81 106-190 22-106 (115)
233 2dng_A Eukaryotic translation 99.5 1.5E-13 5E-18 101.6 13.4 80 105-190 11-94 (103)
234 2div_A TRNA selenocysteine ass 99.5 7.9E-14 2.7E-18 102.2 11.8 84 106-189 6-94 (99)
235 2dnh_A Bruno-like 5, RNA bindi 99.5 1.4E-13 4.8E-18 102.0 13.3 83 107-190 13-98 (105)
236 3bs9_A Nucleolysin TIA-1 isofo 99.5 7.7E-14 2.6E-18 99.7 11.4 78 107-188 4-85 (87)
237 2dgu_A Heterogeneous nuclear r 99.5 1.7E-13 5.8E-18 101.2 13.6 76 107-190 9-84 (103)
238 4a8x_A RNA-binding protein wit 99.5 5.9E-14 2E-18 100.5 10.7 77 109-189 4-85 (88)
239 1wi8_A EIF-4B, eukaryotic tran 99.5 9.5E-14 3.3E-18 102.8 12.0 80 105-190 11-95 (104)
240 2cph_A RNA binding motif prote 99.5 1.2E-13 4E-18 102.8 12.6 82 105-190 11-98 (107)
241 1x4d_A Matrin 3; structural ge 99.5 3.6E-14 1.2E-18 104.2 9.4 77 107-189 13-92 (102)
242 1x5u_A Splicing factor 3B subu 99.5 1.1E-13 3.7E-18 102.6 12.2 82 104-189 10-95 (105)
243 2e5j_A Methenyltetrahydrofolat 99.5 7.1E-14 2.4E-18 102.1 11.0 80 105-189 15-94 (97)
244 2cpf_A RNA binding motif prote 99.5 9.1E-14 3.1E-18 101.7 11.6 79 108-190 4-89 (98)
245 3mdf_A Peptidyl-prolyl CIS-tra 99.5 8E-14 2.7E-18 99.1 10.8 76 107-186 5-84 (85)
246 1x4h_A RNA-binding protein 28; 99.5 1.7E-13 5.9E-18 102.5 13.2 82 105-190 11-102 (111)
247 2dgp_A Bruno-like 4, RNA bindi 99.5 9.5E-14 3.2E-18 103.1 11.6 82 105-190 9-97 (106)
248 3ulh_A THO complex subunit 4; 99.5 1.3E-13 4.3E-18 102.6 12.1 80 103-186 23-105 (107)
249 3tht_A Alkylated DNA repair pr 99.5 2.7E-14 9.4E-19 126.9 9.8 77 2-81 14-97 (345)
250 2ywk_A Putative RNA-binding pr 99.5 9.7E-14 3.3E-18 100.9 11.1 79 105-187 12-93 (95)
251 1x5t_A Splicing factor 3B subu 99.5 6.8E-14 2.3E-18 101.9 10.2 79 108-190 4-87 (96)
252 2dnp_A RNA-binding protein 14; 99.5 1.4E-13 4.8E-18 99.0 11.7 75 107-189 7-81 (90)
253 2e5h_A Zinc finger CCHC-type a 99.5 1.4E-13 4.9E-18 99.8 11.8 80 103-186 10-93 (94)
254 2cq1_A PTB-like protein L; RRM 99.5 2.1E-13 7E-18 100.2 12.6 79 106-190 12-92 (101)
255 2cpi_A CCR4-NOT transcription 99.5 1.1E-13 3.9E-18 103.7 11.3 81 106-190 12-102 (111)
256 2dgv_A HnRNP M, heterogeneous 99.5 1.3E-13 4.4E-18 99.6 11.2 80 106-189 5-86 (92)
257 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.3E-13 4.5E-18 100.8 11.2 76 5-84 9-91 (100)
258 1why_A Hypothetical protein ri 99.5 1.6E-13 5.5E-18 100.2 11.7 77 107-189 15-93 (97)
259 1jmt_A Splicing factor U2AF 35 99.5 4.8E-15 1.6E-19 109.7 3.2 70 11-80 20-103 (104)
260 1x4g_A Nucleolysin TIAR; struc 99.5 1.8E-13 6.2E-18 102.2 11.9 78 107-190 23-100 (109)
261 1u6f_A Tcubp1, RNA-binding pro 99.5 3.5E-13 1.2E-17 105.2 13.9 82 105-190 38-123 (139)
262 3md1_A Nuclear and cytoplasmic 99.5 2.1E-13 7.1E-18 96.5 11.5 76 110-189 2-81 (83)
263 2hvz_A Splicing factor, argini 99.5 8.3E-14 2.8E-18 102.5 9.7 76 110-190 1-76 (101)
264 1wf1_A RNA-binding protein RAL 99.5 1.7E-13 5.9E-18 102.5 11.5 75 107-189 25-100 (110)
265 2dhg_A TRNA selenocysteine ass 99.5 2E-13 7E-18 100.9 11.7 80 106-189 6-90 (104)
266 1wex_A Hypothetical protein (r 99.5 2.2E-13 7.4E-18 100.6 11.7 78 106-189 12-91 (104)
267 2x1f_A MRNA 3'-END-processing 99.5 1.6E-13 5.4E-18 100.0 10.9 77 109-189 2-82 (96)
268 2la6_A RNA-binding protein FUS 99.5 2.2E-13 7.4E-18 99.9 11.4 79 104-186 8-98 (99)
269 1p27_B RNA-binding protein 8A; 99.5 1.8E-13 6.3E-18 101.5 11.0 80 106-189 20-103 (106)
270 3r27_A HnRNP L, heterogeneous 99.5 1.8E-13 6.1E-18 99.6 10.6 76 107-188 19-96 (100)
271 2cpe_A RNA-binding protein EWS 99.5 2.8E-13 9.4E-18 101.8 11.9 82 105-190 11-104 (113)
272 2e44_A Insulin-like growth fac 99.5 2.1E-13 7.3E-18 99.3 11.0 81 105-189 11-92 (96)
273 2fc9_A NCL protein; structure 99.5 1.6E-13 5.6E-18 100.9 10.4 81 106-190 12-92 (101)
274 1oo0_B CG8781-PA, drosophila Y 99.5 2.2E-13 7.4E-18 101.9 11.2 80 106-189 23-106 (110)
275 2cpd_A Apobec-1 stimulating pr 99.5 7.1E-13 2.4E-17 97.1 13.7 76 106-189 12-89 (99)
276 3ue2_A Poly(U)-binding-splicin 99.5 4.6E-14 1.6E-18 106.6 7.4 79 4-82 18-108 (118)
277 2lkz_A RNA-binding protein 5; 99.5 6.8E-14 2.3E-18 101.6 8.0 79 106-188 6-94 (95)
278 2cpj_A Non-POU domain-containi 99.5 2.6E-13 8.8E-18 99.5 11.2 79 106-190 12-90 (99)
279 2cqh_A IGF-II mRNA-binding pro 99.5 1.1E-13 3.9E-18 100.2 9.1 77 107-190 6-84 (93)
280 2jvo_A Nucleolar protein 3; nu 99.5 1.6E-13 5.3E-18 102.3 10.1 77 106-190 28-104 (108)
281 2ad9_A Polypyrimidine tract-bi 99.5 1.9E-13 6.6E-18 102.9 10.6 79 106-190 28-108 (119)
282 2ytc_A PRE-mRNA-splicing facto 99.5 2.6E-13 9E-18 96.4 10.7 76 105-186 8-84 (85)
283 2lxi_A RNA-binding protein 10; 99.5 5.9E-14 2E-18 101.3 7.2 76 110-189 2-83 (91)
284 1h2v_Z 20 kDa nuclear CAP bind 99.5 4.6E-13 1.6E-17 106.6 13.1 79 107-189 37-119 (156)
285 2cqp_A RNA-binding protein 12; 99.5 1.9E-13 6.4E-18 100.0 9.9 80 106-189 12-95 (98)
286 1sjr_A Polypyrimidine tract-bi 99.5 2.6E-13 8.8E-18 107.5 11.2 81 107-189 44-124 (164)
287 2dh8_A DAZ-associated protein 99.5 4.3E-13 1.5E-17 99.4 11.9 81 105-190 12-96 (105)
288 2kxn_B Transformer-2 protein h 99.5 1.9E-13 6.4E-18 105.2 9.9 81 105-189 42-126 (129)
289 2jrs_A RNA-binding protein 39; 99.5 4.7E-13 1.6E-17 99.7 11.8 80 106-189 23-106 (108)
290 2err_A Ataxin-2-binding protei 99.5 2.2E-13 7.4E-18 101.7 9.9 79 106-188 26-106 (109)
291 2dgw_A Probable RNA-binding pr 99.5 9.1E-13 3.1E-17 94.9 12.4 79 105-189 6-87 (91)
292 2khc_A Testis-specific RNP-typ 99.5 5.1E-13 1.8E-17 101.1 11.6 78 105-186 36-117 (118)
293 2cqd_A RNA-binding region cont 99.5 9.1E-13 3.1E-17 99.4 12.9 81 104-189 12-96 (116)
294 2cpx_A Hypothetical protein FL 99.5 6.4E-13 2.2E-17 100.1 11.8 80 107-190 23-106 (115)
295 2kvi_A Nuclear polyadenylated 99.5 2.1E-13 7.3E-18 99.3 8.7 75 107-189 8-83 (96)
296 2xnq_A Nuclear polyadenylated 99.5 6.4E-13 2.2E-17 97.0 11.1 76 105-188 18-94 (97)
297 3s6e_A RNA-binding protein 39; 99.5 2.5E-13 8.6E-18 101.8 9.1 78 4-82 5-92 (114)
298 3sde_A Paraspeckle component 1 99.5 1.5E-13 5.3E-18 118.8 8.9 81 4-84 94-180 (261)
299 1x5p_A Negative elongation fac 99.5 2E-12 6.7E-17 94.3 13.4 77 106-190 12-88 (97)
300 3p5t_L Cleavage and polyadenyl 99.5 1E-13 3.5E-18 99.8 6.4 76 110-189 2-83 (90)
301 2cq4_A RNA binding motif prote 99.4 2.3E-13 7.8E-18 102.5 8.6 77 108-189 24-104 (114)
302 2e5i_A Heterogeneous nuclear r 99.4 2E-12 6.8E-17 98.2 13.8 77 109-189 25-102 (124)
303 2kt5_A RNA and export factor-b 99.4 1.2E-12 4.2E-17 100.0 12.7 82 104-189 30-114 (124)
304 3ucg_A Polyadenylate-binding p 99.4 7.8E-13 2.7E-17 94.8 10.8 75 109-188 6-84 (89)
305 3s7r_A Heterogeneous nuclear r 99.4 9E-13 3.1E-17 94.1 11.0 75 106-185 8-86 (87)
306 2la4_A Nuclear and cytoplasmic 99.4 4.3E-13 1.5E-17 98.6 9.3 74 108-187 26-99 (101)
307 1wez_A HnRNP H', FTP-3, hetero 99.4 6.5E-13 2.2E-17 97.8 10.2 78 105-188 11-91 (102)
308 3zzy_A Polypyrimidine tract-bi 99.4 9.4E-13 3.2E-17 100.4 11.2 81 107-189 26-106 (130)
309 2jwn_A Embryonic polyadenylate 99.4 8.5E-13 2.9E-17 100.8 11.1 77 108-189 35-115 (124)
310 2ek1_A RNA-binding protein 12; 99.4 2.2E-13 7.5E-18 99.0 7.5 77 107-187 13-93 (95)
311 2cqg_A TDP-43, TAR DNA-binding 99.4 3.6E-12 1.2E-16 94.0 14.2 79 105-189 11-93 (103)
312 3lqv_A PRE-mRNA branch site pr 99.4 6.1E-13 2.1E-17 100.2 10.2 79 107-189 6-85 (115)
313 1x5o_A RNA binding motif, sing 99.4 2E-12 6.8E-17 97.2 12.9 83 106-188 22-111 (114)
314 1wg5_A Heterogeneous nuclear r 99.4 1.1E-12 3.6E-17 97.1 11.2 80 104-188 10-93 (104)
315 3ns6_A Eukaryotic translation 99.4 2.5E-13 8.6E-18 99.7 7.5 76 109-188 6-92 (100)
316 1x4f_A Matrin 3; structural ge 99.4 5.5E-13 1.9E-17 99.3 9.4 78 106-189 22-102 (112)
317 2a3j_A U1 small nuclear ribonu 99.4 6.9E-13 2.3E-17 101.5 10.1 80 106-189 26-110 (127)
318 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1.2E-12 4.2E-17 102.0 11.8 79 103-185 57-139 (140)
319 1s79_A Lupus LA protein; RRM, 99.4 7E-13 2.4E-17 97.8 9.7 73 108-185 10-85 (103)
320 3n9u_C Cleavage and polyadenyl 99.4 8.8E-13 3E-17 104.8 11.0 77 108-188 54-136 (156)
321 2fc8_A NCL protein; structure 99.4 1.4E-12 4.8E-17 96.0 11.3 79 105-190 11-93 (102)
322 1whx_A Hypothetical protein ri 99.4 3.1E-13 1.1E-17 101.2 7.8 75 108-188 9-83 (111)
323 2e5g_A U6 snRNA-specific termi 99.4 1.4E-12 4.9E-17 94.5 11.0 73 108-187 7-80 (94)
324 2dnn_A RNA-binding protein 12; 99.4 7.7E-13 2.6E-17 98.5 9.6 76 106-187 13-91 (109)
325 1x4b_A Heterogeneous nuclear r 99.4 1.1E-12 3.8E-17 98.9 10.6 78 108-190 26-107 (116)
326 1x4e_A RNA binding motif, sing 99.4 2.1E-13 7.4E-18 96.9 6.2 68 108-175 4-75 (85)
327 2db1_A Heterogeneous nuclear r 99.4 1.1E-12 3.8E-17 99.3 10.4 79 105-188 13-97 (118)
328 1p1t_A Cleavage stimulation fa 99.4 4.3E-13 1.5E-17 99.2 7.8 78 108-189 7-88 (104)
329 1fjc_A Nucleolin RBD2, protein 99.4 7.3E-13 2.5E-17 96.4 8.6 79 106-189 13-91 (96)
330 2hgn_A Heterogeneous nuclear r 99.4 8.6E-14 2.9E-18 108.2 3.7 118 46-188 2-122 (139)
331 2krb_A Eukaryotic translation 99.4 5.3E-13 1.8E-17 94.0 7.5 66 110-175 2-75 (81)
332 1nu4_A U1A RNA binding domain; 99.4 5.7E-13 2E-17 97.1 7.8 80 106-189 5-89 (97)
333 2nlw_A Eukaryotic translation 99.4 1.5E-12 5E-17 96.5 10.1 79 107-188 13-99 (105)
334 2cq2_A Hypothetical protein LO 99.4 9E-13 3.1E-17 98.3 8.6 80 107-188 23-105 (114)
335 2m2b_A RNA-binding protein 10; 99.4 7.7E-13 2.6E-17 102.1 8.5 78 107-189 21-108 (131)
336 2hgl_A HNRPF protein, heteroge 99.4 9.2E-13 3.2E-17 102.0 8.9 79 104-187 39-123 (136)
337 2diu_A KIAA0430 protein; struc 99.4 1.6E-12 5.4E-17 92.3 9.0 72 109-190 9-85 (96)
338 2rs2_A Musashi-1, RNA-binding 99.4 1.9E-12 6.6E-17 96.5 10.1 79 107-190 23-105 (109)
339 2cpy_A RNA-binding protein 12; 99.4 1.5E-12 5.1E-17 98.0 9.1 78 106-188 12-93 (114)
340 2j76_E EIF-4B, EIF4B, eukaryot 99.4 4.1E-13 1.4E-17 98.6 5.8 78 105-188 15-97 (100)
341 2mss_A Protein (musashi1); RNA 99.4 6.8E-13 2.3E-17 91.9 6.5 69 111-184 1-73 (75)
342 1wel_A RNA-binding protein 12; 99.4 2E-12 6.9E-17 98.8 9.2 80 104-188 20-103 (124)
343 1uaw_A Mouse-musashi-1; RNP-ty 99.4 8.4E-13 2.9E-17 91.9 6.4 71 110-185 1-75 (77)
344 1wg1_A KIAA1579 protein, homol 99.4 1.8E-12 6.1E-17 92.8 8.0 74 108-188 4-77 (88)
345 2hzc_A Splicing factor U2AF 65 99.4 3.1E-12 1.1E-16 91.2 9.1 71 107-184 4-85 (87)
346 2dis_A Unnamed protein product 99.4 4.9E-12 1.7E-16 94.2 10.3 78 108-189 7-92 (109)
347 2f3j_A RNA and export factor b 99.3 4.9E-12 1.7E-16 102.7 10.8 79 105-187 84-165 (177)
348 3egn_A RNA-binding protein 40; 99.3 4.4E-12 1.5E-16 99.4 9.8 80 107-190 43-131 (143)
349 3d2w_A TAR DNA-binding protein 99.3 7.3E-12 2.5E-16 89.7 9.8 77 106-189 8-84 (89)
350 2lmi_A GRSF-1, G-rich sequence 99.3 1.3E-12 4.3E-17 97.2 5.9 77 106-187 8-90 (107)
351 2ki2_A SS-DNA binding protein 99.3 8.2E-13 2.8E-17 94.9 4.6 74 110-188 2-79 (90)
352 2bz2_A Negative elongation fac 99.3 6.7E-12 2.3E-16 95.4 9.3 76 106-189 36-111 (121)
353 3q2s_C Cleavage and polyadenyl 99.3 4.5E-12 1.6E-16 107.2 9.1 76 108-187 67-148 (229)
354 1fj7_A Nucleolin RBD1, protein 99.3 7.8E-12 2.7E-16 91.8 8.7 77 107-189 15-95 (101)
355 2dha_A FLJ20171 protein; RRM d 99.3 4.3E-12 1.5E-16 96.5 7.3 76 107-187 21-103 (123)
356 1wf0_A TDP-43, TAR DNA-binding 99.3 5.5E-12 1.9E-16 90.2 7.0 74 108-190 4-79 (88)
357 2xs2_A Deleted in azoospermia- 99.3 7.1E-12 2.4E-16 92.2 7.8 75 107-187 7-84 (102)
358 2hgm_A HNRPF protein, heteroge 99.3 5.5E-12 1.9E-16 96.1 7.4 76 105-186 38-118 (126)
359 1iqt_A AUF1, heterogeneous nuc 99.3 4.1E-12 1.4E-16 87.9 5.7 64 111-175 1-68 (75)
360 2lcw_A RNA-binding protein FUS 98.9 3.7E-13 1.3E-17 101.7 0.0 79 108-190 6-96 (116)
361 2dit_A HIV TAT specific factor 99.3 1E-10 3.4E-15 87.6 12.7 80 107-190 13-103 (112)
362 2j8a_A Histone-lysine N-methyl 99.3 2.4E-11 8.2E-16 91.3 9.1 75 110-188 3-95 (136)
363 1owx_A Lupus LA protein, SS-B, 99.2 4.6E-11 1.6E-15 89.6 9.8 75 4-81 16-94 (121)
364 2dnl_A Cytoplasmic polyadenyla 99.2 1.7E-11 5.9E-16 92.1 7.1 60 107-167 6-72 (114)
365 2voo_A Lupus LA protein; RNA-b 99.2 2.7E-10 9.2E-15 93.7 14.3 118 54-187 63-185 (193)
366 2pe8_A Splicing factor 45; RRM 99.2 1.4E-10 4.9E-15 85.5 11.1 77 108-188 7-93 (105)
367 2dnr_A Synaptojanin-1; RRM dom 99.2 8.4E-11 2.9E-15 82.7 7.7 73 4-82 5-85 (91)
368 3u1l_A PRE-mRNA-splicing facto 99.1 1E-10 3.5E-15 98.7 8.5 78 106-189 131-229 (240)
369 3v4m_A Splicing factor U2AF 65 99.1 6E-10 2.1E-14 82.2 8.9 75 109-187 5-95 (105)
370 3ue2_A Poly(U)-binding-splicin 99.1 9E-10 3.1E-14 82.9 9.5 76 108-187 19-107 (118)
371 3tht_A Alkylated DNA repair pr 99.0 4.1E-10 1.4E-14 100.1 8.3 66 106-173 15-82 (345)
372 3s6e_A RNA-binding protein 39; 99.0 1.3E-09 4.6E-14 81.4 9.8 76 108-187 6-91 (114)
373 1jmt_A Splicing factor U2AF 35 99.0 3E-10 1E-14 83.7 4.7 68 114-185 20-102 (104)
374 2d9o_A DNAJ (HSP40) homolog, s 99.0 1.3E-08 4.6E-13 74.0 12.0 64 119-189 27-90 (100)
375 1ufw_A Synaptojanin 2; RNP dom 98.9 1.9E-09 6.6E-14 76.1 6.5 72 4-81 13-93 (95)
376 1owx_A Lupus LA protein, SS-B, 98.9 6.6E-09 2.3E-13 77.8 9.1 70 104-175 13-86 (121)
377 3dxb_A Thioredoxin N-terminall 98.9 3E-09 1E-13 89.5 7.4 77 6-82 124-212 (222)
378 2l9w_A U4/U6 snRNA-associated- 98.7 5E-08 1.7E-12 70.2 8.1 72 5-79 20-96 (117)
379 2dnr_A Synaptojanin-1; RRM dom 98.6 1.5E-07 5E-12 66.2 8.6 72 108-188 6-85 (91)
380 1ufw_A Synaptojanin 2; RNP dom 98.5 7.4E-07 2.5E-11 62.9 8.2 71 107-186 13-92 (95)
381 2dhx_A Poly (ADP-ribose) polym 98.4 3.8E-06 1.3E-10 60.0 11.2 73 3-81 5-82 (104)
382 3dxb_A Thioredoxin N-terminall 98.2 3.9E-06 1.3E-10 70.2 7.6 62 122-187 142-211 (222)
383 1wey_A Calcipressin 1; structu 98.1 3.1E-05 1.1E-09 55.6 9.1 78 3-83 2-84 (104)
384 2l9w_A U4/U6 snRNA-associated- 98.0 4.1E-05 1.4E-09 55.2 9.2 71 108-184 20-95 (117)
385 1whv_A Poly(A)-specific ribonu 97.7 7.3E-05 2.5E-09 52.7 6.4 54 6-65 16-69 (100)
386 1uw4_A UPF3X; nonsense mediate 97.7 0.00011 3.9E-09 51.7 7.2 65 7-71 2-71 (91)
387 1wwh_A Nucleoporin 35, nucleop 97.7 0.00017 5.9E-09 53.2 8.0 70 6-80 24-94 (119)
388 3ctr_A Poly(A)-specific ribonu 97.6 0.0001 3.4E-09 52.2 4.9 54 7-66 7-60 (101)
389 2l08_A Regulator of nonsense t 97.2 0.0011 3.9E-08 46.9 6.5 67 5-71 8-79 (97)
390 1uw4_A UPF3X; nonsense mediate 96.9 0.011 3.7E-07 41.5 9.9 68 110-177 2-75 (91)
391 3p3d_A Nucleoporin 53; structu 96.9 0.0025 8.6E-08 47.6 6.3 76 4-81 5-97 (132)
392 1wey_A Calcipressin 1; structu 96.8 0.0046 1.6E-07 44.3 7.4 73 109-187 5-82 (104)
393 1wwh_A Nucleoporin 35, nucleop 96.7 0.0078 2.7E-07 44.3 8.1 65 106-174 21-85 (119)
394 1whv_A Poly(A)-specific ribonu 96.6 0.014 4.9E-07 41.1 8.3 54 110-168 17-70 (100)
395 2dhx_A Poly (ADP-ribose) polym 96.5 0.028 9.7E-07 40.0 9.6 71 108-187 7-82 (104)
396 3pq1_A Poly(A) RNA polymerase; 96.4 0.0016 5.6E-08 59.7 3.3 56 5-63 52-107 (464)
397 3ctr_A Poly(A)-specific ribonu 96.1 0.01 3.5E-07 41.9 5.2 53 111-168 8-60 (101)
398 2l08_A Regulator of nonsense t 95.3 0.046 1.6E-06 38.6 6.0 70 109-178 9-84 (97)
399 3pq1_A Poly(A) RNA polymerase; 93.7 0.054 1.8E-06 49.7 4.3 55 109-165 53-107 (464)
400 3d45_A Poly(A)-specific ribonu 92.5 0.24 8.2E-06 46.2 6.9 54 7-66 441-494 (507)
401 3p3d_A Nucleoporin 53; structu 92.2 0.36 1.2E-05 36.0 6.2 65 109-175 7-89 (132)
402 2g0c_A ATP-dependent RNA helic 82.6 3.9 0.00013 26.9 6.1 68 8-81 2-75 (76)
403 3d45_A Poly(A)-specific ribonu 75.3 10 0.00036 35.1 8.5 56 109-169 440-495 (507)
404 3ts2_A Protein LIN-28 homolog 63.2 1.3 4.6E-05 33.8 -0.3 29 21-54 2-30 (148)
405 3lpe_A Putative transcription 50.4 57 0.002 22.2 6.7 34 32-67 39-72 (92)
406 4eyt_A Telomerase associated p 49.5 59 0.002 22.1 8.1 69 4-79 10-78 (129)
407 4e8u_A Putative uncharacterize 48.5 24 0.00082 27.4 4.6 51 8-58 14-75 (172)
408 3j21_T 50S ribosomal protein L 45.1 68 0.0023 21.7 6.0 55 9-63 25-81 (86)
409 2k5n_A Putative cold-shock pro 33.1 18 0.00062 23.8 1.5 19 31-54 5-23 (74)
410 2e5p_A Protein PHF1, PHD finge 32.6 25 0.00084 22.5 1.9 21 31-56 28-48 (68)
411 2kcm_A Cold shock domain famil 31.0 21 0.00071 23.5 1.5 11 45-55 12-22 (74)
412 3h7h_B Transcription elongatio 30.7 73 0.0025 22.5 4.5 35 32-68 40-74 (106)
413 1vq8_S 50S ribosomal protein L 29.7 1.1E+02 0.0038 20.6 5.0 54 9-62 24-79 (85)
414 3cam_A Cold-shock domain famil 29.2 23 0.0008 22.7 1.5 19 31-54 4-22 (67)
415 1c9o_A CSPB, cold-shock protei 29.1 23 0.0008 22.5 1.5 19 31-54 4-22 (66)
416 2eqj_A Metal-response element- 28.9 31 0.0011 22.1 1.9 11 45-55 41-51 (66)
417 2od0_A Hypothetical protein VP 27.9 52 0.0018 23.0 3.3 27 18-49 4-30 (105)
418 3a0j_A Cold shock protein; OB- 27.6 26 0.00088 22.9 1.5 19 31-54 4-22 (73)
419 1g6p_A Cold shock protein TMCS 26.7 28 0.00094 22.2 1.5 10 45-54 12-21 (66)
420 4eyt_A Telomerase associated p 24.7 1.7E+02 0.0057 19.9 8.0 56 108-167 11-66 (129)
421 2m0o_A PHD finger protein 1; t 24.6 40 0.0014 22.2 1.9 21 31-56 45-65 (79)
422 1h95_A CSD, Y-box binding prot 24.4 31 0.0011 22.9 1.5 9 45-53 20-28 (79)
423 3ulj_A LIN28B, DNA-binding pro 23.9 32 0.0011 23.6 1.5 8 45-52 20-27 (90)
424 3i2z_B RNA chaperone, negative 23.7 34 0.0011 22.2 1.5 20 30-54 7-26 (71)
425 3fut_A Dimethyladenosine trans 22.8 64 0.0022 27.0 3.5 32 6-38 110-141 (271)
426 4e8u_A Putative uncharacterize 22.1 2.2E+02 0.0075 22.0 6.0 48 110-158 13-73 (172)
427 3swz_A Steroid 17-alpha-hydrox 21.9 97 0.0033 27.7 4.9 59 9-74 17-79 (494)
428 3aqq_A Calcium-regulated heat 21.3 45 0.0015 25.2 2.0 19 31-54 65-83 (147)
429 1nz8_A Transcription antitermi 20.9 1.4E+02 0.0047 21.2 4.6 24 44-67 61-89 (119)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=9.4e-33 Score=233.05 Aligned_cols=165 Identities=24% Similarity=0.345 Sum_probs=144.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
+.|.+||||+|||+++|+++|+++|++||+|.+|+|+. ++.++|||||+|.+.++|.+|+..+|+..+.|+.|.+.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 46789999999999999999999999999999999954 578899999999999999999999999999999999998
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC--eEEEEEecCH
Q 021177 80 AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSY 157 (316)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~--~~afV~f~~~ 157 (316)
+....... .....+|||+|||..+++++|.++|.+||.|..+.+..+..+ |||||+|.+.
T Consensus 92 ~~~~~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~ 153 (213)
T 4f02_A 92 SQRDPSLR------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQ 153 (213)
T ss_dssp CCCCTHHH------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSH
T ss_pred cccccccc------------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCH
Confidence 76432111 112458999999999999999999999999999999887654 7999999999
Q ss_pred HHHHHHHHHhCCceecccccceEEEEEeeccC
Q 021177 158 DDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (316)
Q Consensus 158 ~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (316)
++|.+|++.|||..+.| +.|.|..+..+
T Consensus 154 ~~a~~Ai~~lng~~~~g----~~i~V~~a~~~ 181 (213)
T 4f02_A 154 EAAERAIEKMNGMLLND----RKVFVGRFKSR 181 (213)
T ss_dssp HHHHHHHHHHTTCEETT----EECEEEECCCH
T ss_pred HHHHHHHHHhCCCEECC----EEEEEEEcCCC
Confidence 99999999999999999 58888876543
No 2
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.9e-31 Score=223.30 Aligned_cols=180 Identities=16% Similarity=0.202 Sum_probs=144.7
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 4 RSSRTLYVGNLP-GDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 4 ~~~~~l~V~nLp-~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
-++++|||+||| ..+|+++|+++|++||.|.+|+|+.+ .+|||||+|.++++|++|++.|||..+.|+.|.|.+++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 478999999999 79999999999999999999999754 379999999999999999999999999999999999875
Q ss_pred CCCCCCCC----CCC---CCCCCCC--C--------CCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCe--EEEEEee
Q 021177 83 GRRHSSSM----DRY---SSYSSGG--S--------RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDV--CFSQVFR 143 (316)
Q Consensus 83 ~~~~~~~~----~~~---~~~~~~~--~--------~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v--~~~~~~~ 143 (316)
....+... ... ..+.... . ......+..+|||+|||+.+++++|+++|.+||.| ..+.+..
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 43211100 000 0000000 0 00112356789999999999999999999999999 8888887
Q ss_pred cCC--CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 144 DRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 144 ~~~--~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
+.. .++|||+|.+.++|.+|+..|||..+.|.....++.+..
T Consensus 160 ~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 160 GKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp CCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 643 379999999999999999999999999987666666543
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3e-31 Score=214.45 Aligned_cols=159 Identities=23% Similarity=0.364 Sum_probs=141.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCC
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (316)
++|||+|||+++|+++|+++|++||+|.++.+.. ++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 6899999999999999999999999999999954 46788999999999999999999899999999999999987543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHH
Q 021177 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDM 160 (316)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A 160 (316)
.. ......+|+|+|||..+++++|.++|.+||.|..+.+..+..+ |||||+|.+.++|
T Consensus 81 ~~------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 142 (166)
T 3md3_A 81 QS------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 142 (166)
T ss_dssp CC------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHH
T ss_pred CC------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 21 1234679999999999999999999999999999999987432 6999999999999
Q ss_pred HHHHHHhCCceecccccceEEEEEeec
Q 021177 161 KYAIRKLDRSEFRNAFSRSYVRVREYD 187 (316)
Q Consensus 161 ~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (316)
.+|+..|||..+.| ..|.+..++
T Consensus 143 ~~A~~~l~g~~~~g----~~i~v~~a~ 165 (166)
T 3md3_A 143 QNAMDSMQGQDLNG----RPLRINWAA 165 (166)
T ss_dssp HHHHHHHTTCEETT----EECEEEESC
T ss_pred HHHHHHhCCCccCC----cEEEEEecC
Confidence 99999999999998 577777653
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.98 E-value=3.1e-31 Score=214.61 Aligned_cols=152 Identities=24% Similarity=0.370 Sum_probs=137.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
++++|||+|||+++|+++|+++|+.||+|.++.+.. ++.++|||||+|.++++|.+|++.|||..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 468999999999999999999999999999999954 67788999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCH
Q 021177 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSY 157 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~ 157 (316)
.... .....+|+|+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.
T Consensus 81 ~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 81 PSSA--------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp CCCG--------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCcc--------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 5331 12356899999999999999999999999999999988753 36999999999
Q ss_pred HHHHHHHHHhCCceecccc
Q 021177 158 DDMKYAIRKLDRSEFRNAF 176 (316)
Q Consensus 158 ~~A~~A~~~l~g~~~~g~~ 176 (316)
++|.+|++.|||..+.|+.
T Consensus 141 ~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 141 IEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp HHHHHHHHHHTTCCCTTCS
T ss_pred HHHHHHHHHhcCCccCCCc
Confidence 9999999999999999853
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.98 E-value=7.1e-31 Score=212.85 Aligned_cols=150 Identities=27% Similarity=0.387 Sum_probs=137.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
++++|||+|||+++|+++|+++|+.||+|..+.+.. ++.++|||||+|.++++|++|++.|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 689999999999999999999999999999999953 67789999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCH
Q 021177 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSY 157 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~ 157 (316)
.... .....+|+|+|||..+++++|.++|.+||.|..+.+..+... +||||+|.+.
T Consensus 82 ~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 82 PGGE--------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp CCSS--------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCcc--------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 5432 123579999999999999999999999999999999987632 6999999999
Q ss_pred HHHHHHHHHhCCceecc
Q 021177 158 DDMKYAIRKLDRSEFRN 174 (316)
Q Consensus 158 ~~A~~A~~~l~g~~~~g 174 (316)
++|.+|+..|||..+.|
T Consensus 142 ~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 142 EEAQEAISALNNVIPEG 158 (168)
T ss_dssp HHHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHhcCCEecC
Confidence 99999999999999987
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=6e-31 Score=218.75 Aligned_cols=167 Identities=17% Similarity=0.297 Sum_probs=139.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||+++|+++|+++|+.||+|.+|.++. ++.++|||||+|.++++|.+|+. +++..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 5678999999999999999999999999999999954 57789999999999999999998 5999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecC
Q 021177 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTS 156 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~ 156 (316)
........ ........+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+
T Consensus 90 ~~~~~~~~--------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~ 155 (196)
T 1l3k_A 90 VSREDSQR--------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 155 (196)
T ss_dssp CC-------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cCcccccc--------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECC
Confidence 75432111 11223457999999999999999999999999999999998753 3699999999
Q ss_pred HHHHHHHHHHhCCceecccccceEEEEEeeccCC
Q 021177 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (316)
Q Consensus 157 ~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~~r 190 (316)
.++|.+|+.. ++..+.| ..+.|..+..+.
T Consensus 156 ~~~A~~A~~~-~~~~~~G----~~i~v~~a~~k~ 184 (196)
T 1l3k_A 156 HDSVDKIVIQ-KYHTVNG----HNCEVRKALSKQ 184 (196)
T ss_dssp HHHHHHHHHC-SCCEETT----EECEEEECC---
T ss_pred HHHHHHHHHh-CCcEECC----EEEEEEecCChh
Confidence 9999999976 7999999 578887766543
No 7
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=6.1e-30 Score=224.89 Aligned_cols=180 Identities=19% Similarity=0.298 Sum_probs=146.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~ 78 (316)
..++++|||+|||+++|+++|+ ++|+.||.|..|.+..++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 5789999999999999999966 899999999999998889999999999999999999999999999999999999
Q ss_pred EcccCCCCCCCC-----CC---------------------C----------------------------------CCCCC
Q 021177 79 LAHGGRRHSSSM-----DR---------------------Y----------------------------------SSYSS 98 (316)
Q Consensus 79 ~a~~~~~~~~~~-----~~---------------------~----------------------------------~~~~~ 98 (316)
++.......... .+ . ..+..
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 986543200000 00 0 00000
Q ss_pred C-------C-C-----------------------CCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC
Q 021177 99 G-------G-S-----------------------RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG 147 (316)
Q Consensus 99 ~-------~-~-----------------------~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~ 147 (316)
. + . .........+|||+|||..+++++|+++|.+||.|..+.+..+. .
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~ 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-H 244 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-C
Confidence 0 0 0 00112345789999999999999999999999999999999665 3
Q ss_pred eEEEEEecCHHHHHHHHHHhCCceec-ccccceEEEEEeec
Q 021177 148 MTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREYD 187 (316)
Q Consensus 148 ~~afV~f~~~~~A~~A~~~l~g~~~~-g~~~~~~i~v~~~~ 187 (316)
+||||+|.+.++|.+|++.|||..+. | ..|.|..++
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~~ak 281 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQN----NAMKISFAK 281 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCC----CEEEEEEec
Confidence 69999999999999999999999999 7 578877653
No 8
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=8.7e-30 Score=212.05 Aligned_cols=178 Identities=22% Similarity=0.366 Sum_probs=144.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKY----G-------PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g 72 (316)
.++++|||+|||+++|+++|+++|+.| | .|.++.+. .++|||||+|.++++|++|+ .|||..+.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 578999999999999999999999999 5 66666663 55899999999999999999 699999999
Q ss_pred ceEEEEEcccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----Ce
Q 021177 73 YRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GM 148 (316)
Q Consensus 73 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~ 148 (316)
+.|.|.++..............................+|+|+|||..+++++|.++|.+||.|..+.+..++. .+
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 99999998765433222111111111112222335678999999999999999999999999999999998753 36
Q ss_pred EEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeeccC
Q 021177 149 TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (316)
Q Consensus 149 ~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (316)
||||+|.+.++|.+|++.|||..+.| ..+.+..+..+
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 194 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQRASVG 194 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETT----EECEEEESCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCCC
Confidence 99999999999999999999999998 58888877554
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=6.5e-30 Score=208.48 Aligned_cols=162 Identities=15% Similarity=0.286 Sum_probs=137.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CC--CCCcEEEEEECCHHHHHHHHHhCCCcccC---CceEE
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PP--RPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLR 76 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~--~~~g~aFVef~~~e~A~~A~~~l~g~~~~---g~~l~ 76 (316)
++++|||+|||+++|+++|+++|++||+|.++.++. ++ .++|||||+|.++++|++|++.|||..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 678999999999999999999999999999999954 22 67899999999999999999999998775 67888
Q ss_pred EEEcccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC---eEEEEE
Q 021177 77 VELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVD 153 (316)
Q Consensus 77 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~ 153 (316)
+.++...... .....+|+|+|||..+++++|+++|.+||.|..+.+..++.+ |||||+
T Consensus 82 ~~~~~~~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~ 142 (175)
T 3nmr_A 82 MKPADSEKNN-------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVT 142 (175)
T ss_dssp EEECGGGCCS-------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEE
T ss_pred Eccccccccc-------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEE
Confidence 8887654321 123569999999999999999999999999999999987653 699999
Q ss_pred ecCHHHHHHHHHHhCCceecccccceEEEEEee
Q 021177 154 YTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 154 f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
|.+.++|.+|++.|||..+.+.. .+.|.|..+
T Consensus 143 f~~~~~A~~A~~~l~g~~~~~g~-~~~l~V~~a 174 (175)
T 3nmr_A 143 FTTRAMAQTAIKAMHQAQTMEGC-SSPMVVKFA 174 (175)
T ss_dssp ESSHHHHHHHHHHHTTSCCCTTC-SSCCEEEEC
T ss_pred ECCHHHHHHHHHHhcCCcccCCC-CCCeEEEec
Confidence 99999999999999998876410 135665543
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=1e-29 Score=214.57 Aligned_cols=173 Identities=20% Similarity=0.302 Sum_probs=143.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
+.++|||+|||+++|+++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 468999999999999999999999999999999954 57889999999999999999999999999999999998865
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCH
Q 021177 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSY 157 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~ 157 (316)
.......... ..........+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.
T Consensus 107 ~~~~~~~~~~---------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~ 177 (216)
T 2qfj_A 107 NIGQAQPIID---------QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKA 177 (216)
T ss_dssp CCGGGHHHHH---------HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred Cccccchhhh---------hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCH
Confidence 4321100000 0000113457999999999999999999999999999999998753 36999999999
Q ss_pred HHHHHHHHHhCCceecccccceEEEEEeeccCC
Q 021177 158 DDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (316)
Q Consensus 158 ~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~~r 190 (316)
++|.+|+..|||..+.| +.|.|..+....
T Consensus 178 ~~A~~A~~~l~g~~~~g----~~i~V~~a~~~~ 206 (216)
T 2qfj_A 178 QSSQDAVSSMNLFDLGG----QYLRVGKAVTPP 206 (216)
T ss_dssp HHHHHHHHHHTTCBCSS----SBCEEEECSSCS
T ss_pred HHHHHHHHHccCCEeCC----cEEEEEEecCCC
Confidence 99999999999999999 478888776553
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.6e-29 Score=205.78 Aligned_cols=155 Identities=23% Similarity=0.406 Sum_probs=136.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKY----G-------PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g 72 (316)
+++++|||+|||+++|+++|+++|++| | .|.++.+. .++|||||+|.++++|.+|+ .|||..+.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 478999999999999999999999999 6 77877775 44899999999999999999 699999999
Q ss_pred ceEEEEEcccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----Ce
Q 021177 73 YRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GM 148 (316)
Q Consensus 73 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~ 148 (316)
+.|.|.++..... .....+|+|+|||..+++++|.++|.+||.|..+.+..++. .|
T Consensus 78 ~~i~v~~~~~~~~--------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g 137 (172)
T 2g4b_A 78 QSLKIRRPHDYQP--------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 137 (172)
T ss_dssp EECEEECCSSCCC--------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEE
T ss_pred ceeeecCCcccCC--------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcce
Confidence 9999998654321 12267999999999999999999999999999999998853 26
Q ss_pred EEEEEecCHHHHHHHHHHhCCceecccccceEEEEEee
Q 021177 149 TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 149 ~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
||||+|.+.++|.+|++.|||..+.| +.+.|..+
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~A 171 (172)
T 2g4b_A 138 YAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQRA 171 (172)
T ss_dssp EEEEEESSTTHHHHHHHHHTTCEETT----EECEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHcCCCEECC----eEEEEEeC
Confidence 99999999999999999999999999 46766643
No 12
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.9e-30 Score=210.19 Aligned_cols=158 Identities=19% Similarity=0.376 Sum_probs=138.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
+++++|||+|||+++|+++|+++|++||+|.++.++. ++.++|||||+|.++++|.+|+. ++..++|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccc
Confidence 4689999999999999999999999999999999954 57899999999999999999999 467899999999987
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecC
Q 021177 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTS 156 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~ 156 (316)
..... .....+|+|+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+
T Consensus 79 ~~~~~--------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 138 (167)
T 2cjk_A 79 IPRDE--------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDS 138 (167)
T ss_dssp CCHHH--------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESS
T ss_pred cchhh--------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECC
Confidence 64321 12356999999999999999999999999999999987753 3799999999
Q ss_pred HHHHHHHHHHhCCceecccccceEEEEEeecc
Q 021177 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (316)
Q Consensus 157 ~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (316)
.++|.+|++ +++..+.| ..|.|..+.+
T Consensus 139 ~~~a~~A~~-~~~~~~~g----~~i~V~~a~p 165 (167)
T 2cjk_A 139 ADAVDRVCQ-NKFIDFKD----RKIEIKRAEP 165 (167)
T ss_dssp HHHHHHHHH-CSEECSSS----SCEEEEECCC
T ss_pred HHHHHHHHh-CCCEEeCC----eEEEEeecCC
Confidence 999999997 89999998 4788877654
No 13
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=2.9e-29 Score=214.03 Aligned_cols=179 Identities=18% Similarity=0.207 Sum_probs=143.9
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 3 SRSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 3 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
..++++|||+|||+ ++|+++|+++|+.||.|.+|.|..+. +|||||+|.++++|++|++.|||..+.|+.|.|.++.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 35789999999999 99999999999999999999997654 7999999999999999999999999999999999987
Q ss_pred cCCCCCCCCC-----CCCCCCCCC--C--------CCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcC-CeEEEEEeecC
Q 021177 82 GGRRHSSSMD-----RYSSYSSGG--S--------RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDR 145 (316)
Q Consensus 82 ~~~~~~~~~~-----~~~~~~~~~--~--------~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G-~v~~~~~~~~~ 145 (316)
.......... ....+.... . ......+..+|+|+|||..+++++|+++|.+|| .|..+.+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~- 187 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 187 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-
Confidence 5532111100 000000000 0 011124568999999999999999999999999 9999998653
Q ss_pred CCeEEEEEecCHHHHHHHHHHhCCceec-ccccceEEEEEeecc
Q 021177 146 GGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREYDS 188 (316)
Q Consensus 146 ~~~~afV~f~~~~~A~~A~~~l~g~~~~-g~~~~~~i~v~~~~~ 188 (316)
..+||||+|.+.++|.+|+..|||..+. | ..+.+..++.
T Consensus 188 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g----~~l~v~~a~~ 227 (229)
T 2adc_A 188 DRKMALIQMGSVEEAVQALIDLHNHDLGEN----HHLRVSFSKS 227 (229)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCBSSSS----CBCEEEECSS
T ss_pred CCcEEEEEECCHHHHHHHHHHHCCCccCCC----CeEEEEEecC
Confidence 2469999999999999999999999998 7 4777776543
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.7e-30 Score=212.27 Aligned_cols=162 Identities=16% Similarity=0.241 Sum_probs=138.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEe--ccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i--~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
..+.++|||+|||+++|+++|+++|+.||.|..+.+ ..++.++|||||+|.++++|.+|++ |||..+.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 467899999999999999999999999997766333 3367889999999999999999996 9999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHH
Q 021177 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDM 160 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A 160 (316)
...... ......+|||+|||..+++++|.++|.+||.|..+ .......+||||+|.+.++|
T Consensus 89 ~~~~~~------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 89 KGRDSK------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp CCSSCS------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHH
T ss_pred CCcccc------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHH
Confidence 754321 12346799999999999999999999999999887 22334457999999999999
Q ss_pred HHHHHHhCCceecccccceEEEEEeecc
Q 021177 161 KYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (316)
Q Consensus 161 ~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (316)
.+|+..|||..+.| +.|.+..+.+
T Consensus 150 ~~A~~~l~g~~~~g----~~i~v~~a~~ 173 (175)
T 1fje_B 150 EKNLEEKQGAEIDG----RSVSLYYTGE 173 (175)
T ss_dssp HHHHHHHTEEEETT----EEEEEEECSS
T ss_pred HHHHHHhCCCEECC----eEEEEEecCC
Confidence 99999999999999 5888887654
No 15
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=3.6e-29 Score=208.59 Aligned_cols=176 Identities=18% Similarity=0.208 Sum_probs=141.6
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 5 SSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 5 ~~~~l~V~nLp~-~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
++++|||+|||+ ++|+++|+++|+.||.|..|.+..+. +|||||+|.++++|++|+..|||..+.|+.|.|.++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 368999999999 99999999999999999999997654 789999999999999999999999999999999998765
Q ss_pred CCCCCCCC-----CCCCCCCC----------CCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcC-CeEEEEEeecCCC
Q 021177 84 RRHSSSMD-----RYSSYSSG----------GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGG 147 (316)
Q Consensus 84 ~~~~~~~~-----~~~~~~~~----------~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~ 147 (316)
........ ....+... ........+..+|+|+|||..+++++|.++|.+|| .|..+.+..+. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~ 158 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-R 158 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-S
T ss_pred CcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-C
Confidence 32211100 00000000 00111224578999999999999999999999999 99999986643 4
Q ss_pred eEEEEEecCHHHHHHHHHHhCCceec-ccccceEEEEEeec
Q 021177 148 MTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREYD 187 (316)
Q Consensus 148 ~~afV~f~~~~~A~~A~~~l~g~~~~-g~~~~~~i~v~~~~ 187 (316)
++|||+|.+.++|.+|+..|||..+. |+ .+.+..++
T Consensus 159 g~afV~f~~~~~A~~A~~~l~g~~~~~g~----~l~v~~a~ 195 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLHNHDLGENH----HLRVSFSK 195 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHTSSCCSSCC----SCCEEEEC
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCCC----eEEEEeec
Confidence 69999999999999999999999998 64 66666554
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=2.8e-28 Score=211.91 Aligned_cols=157 Identities=24% Similarity=0.311 Sum_probs=137.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
.+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++|||||+|.+.++|.+|+..|||..+.|+.|.|.++..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR---DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-
Confidence 3567999999999999999999999999999999963 489999999999999999999999999999999999763
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC---eEEEEEecCHHHH
Q 021177 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDM 160 (316)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~f~~~~~A 160 (316)
..+|+|+|||..+++++|.++|.+||.|..+.+..+..+ |||||+|.+.++|
T Consensus 96 -------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 96 -------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp -------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHH
T ss_pred -------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHH
Confidence 348999999999999999999999999999999988543 6999999999999
Q ss_pred HHHHHHhCCceecccccceEEEEEeeccC
Q 021177 161 KYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (316)
Q Consensus 161 ~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (316)
.+|+..||+..+......+.+.|......
T Consensus 151 ~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 151 RKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 99999996554442222357777776543
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=5.9e-28 Score=212.41 Aligned_cols=166 Identities=19% Similarity=0.222 Sum_probs=146.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||+++|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4578999999999999999999999999999999853 6788999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCC-CHHHHHHHHhhcCCeEEEEEeecCCC---eEEEEEecC
Q 021177 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTS 156 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~-t~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~f~~ 156 (316)
....... ......+|+|+|||..+ ++++|.++|..||.|..+.+..+..+ |+|||+|.+
T Consensus 173 ~~~~~~~-----------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 235 (284)
T 3smz_A 173 DAGQLTP-----------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYET 235 (284)
T ss_dssp CGGGCCT-----------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSS
T ss_pred CCCCCCc-----------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCC
Confidence 7654221 12346799999999995 99999999999999999999887544 699999999
Q ss_pred HHHHHHHHHHhCCceecccccceEEEEEeeccCC
Q 021177 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (316)
Q Consensus 157 ~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~~r 190 (316)
.++|.+|+..|||..+.| ..+.+..+.+..
T Consensus 236 ~~~A~~A~~~l~g~~~~g----~~l~v~~a~~~~ 265 (284)
T 3smz_A 236 AEMAEEAQQQADGLSLGG----SHLRVSFCAPGP 265 (284)
T ss_dssp HHHHHHHHHHHTTCEETT----EECEEEECCSSS
T ss_pred HHHHHHHHHHhCCCccCC----eEEEEEEecCCC
Confidence 999999999999999998 588888876543
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.6e-27 Score=209.57 Aligned_cols=151 Identities=24% Similarity=0.280 Sum_probs=137.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
.++++|||+|||+++|+++|.++|+.|| |..+.+ +.++|||||+|.++++|.+|+..|||..+.|+.|.|.++..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~- 94 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT- 94 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCC-
Confidence 3679999999999999999999999999 999988 45689999999999999999999999999999999998442
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHH
Q 021177 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDD 159 (316)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~ 159 (316)
..+|||+|||..+++++|.++|.+||.|..+.+..+..+ |||||+|.+.++
T Consensus 95 -------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 149 (284)
T 3smz_A 95 -------------------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS 149 (284)
T ss_dssp -------------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred -------------------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHH
Confidence 359999999999999999999999999999999877543 699999999999
Q ss_pred HHHHHHHhCCceecccccceEEEEEeecc
Q 021177 160 MKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (316)
Q Consensus 160 A~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (316)
|..|+..+||..+.| ..+.+.....
T Consensus 150 a~~A~~~l~~~~~~g----~~i~v~~a~~ 174 (284)
T 3smz_A 150 AARAKSDLLGKPLGP----RTLYVHWTDA 174 (284)
T ss_dssp HHHHHHHHTTCEETT----EECEEEECCG
T ss_pred HHHHHHHhCCCEeCC----cEEEEEECCC
Confidence 999999999999998 5777777644
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=7.8e-28 Score=212.48 Aligned_cols=166 Identities=16% Similarity=0.275 Sum_probs=140.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
+.++|||+|||+.+|+++|.++|+.|| .|..+.++. .+.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999965 35789999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCC-CCHHHHHHHHhhcCCeEEEEEeecCC-----CeEEEEEec
Q 021177 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRG-----GMTGIVDYT 155 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~-~t~~~l~~~f~~~G~v~~~~~~~~~~-----~~~afV~f~ 155 (316)
+....... ........+|+|+|||.. +++++|.++|.+||.|..+.+..+.. .|||||+|.
T Consensus 196 ~~~~~~~~-------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~ 262 (292)
T 2ghp_A 196 PLEKSKRT-------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFE 262 (292)
T ss_dssp CC----------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEES
T ss_pred CCcccccc-------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeC
Confidence 54422111 112345679999999999 99999999999999999999988654 479999999
Q ss_pred CHHHHHHHHHHhCCceecccccceEEEEEeecc
Q 021177 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (316)
Q Consensus 156 ~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (316)
+.++|.+|+ .|||..+.| +.|.|..+.+
T Consensus 263 ~~~~A~~A~-~l~g~~~~g----~~i~V~~a~~ 290 (292)
T 2ghp_A 263 NKDSAERAL-QMNRSLLGN----REISVSLADK 290 (292)
T ss_dssp SHHHHHHHG-GGTTEEETT----EEEEEEECCC
T ss_pred CHHHHHHHH-HhcCCEECC----cEEEEEEecC
Confidence 999999999 999999998 5888887654
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=2.5e-27 Score=209.21 Aligned_cols=153 Identities=21% Similarity=0.296 Sum_probs=134.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccC-CCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~-~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
.+.++|||+|||+++|+++|+++|+.||+|..|.|..+ ..++|||||+|.++++|.+|++ |||..+.|+.|.|.++.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~- 116 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT- 116 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-
Confidence 56899999999999999999999999999999999653 3358999999999999999996 99999999999999853
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcC-CeEEEEEeecC---CCeEEEEEecCHH
Q 021177 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDR---GGMTGIVDYTSYD 158 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G-~v~~~~~~~~~---~~~~afV~f~~~~ 158 (316)
..+|||+|||..+++++|.++|.+|| .|..+.+..+. ..+||||+|.+.+
T Consensus 117 --------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~ 170 (292)
T 2ghp_A 117 --------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKE 170 (292)
T ss_dssp --------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHH
T ss_pred --------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHH
Confidence 46999999999999999999999999 99999998765 3479999999999
Q ss_pred HHHHHHHHhCCceecccccceEEEEEeecc
Q 021177 159 DMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (316)
Q Consensus 159 ~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (316)
+|..|+..|||..+.| ..+.+..+.+
T Consensus 171 ~a~~A~~~l~g~~~~g----~~l~v~~a~~ 196 (292)
T 2ghp_A 171 DARYCVEKLNGLKIEG----YTLVTKVSNP 196 (292)
T ss_dssp HHHHHHHHHTTCEETT----EECEEEECCC
T ss_pred HHHHHHHHhCCCEeCC----cEEEEEECCC
Confidence 9999999999999998 5777776653
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=4.6e-23 Score=156.40 Aligned_cols=108 Identities=19% Similarity=0.320 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~-~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
.+.+|||+|||+++|+++|+++|++||.|.+|+|+. .+.++|||||+|.+.++|++|++.|||..|+|+.|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 467899999999999999999999999999999965 3457899999999999999999999999999999999998754
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHH
Q 021177 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQ 124 (316)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 124 (316)
...... .........+|||+|||+.+|++
T Consensus 84 ~~~~~~------------~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 84 KEREAE------------LGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp CC---------------------------------------
T ss_pred cccccc------------cccccCCCCceEeCCCCCCcccc
Confidence 322111 01112234579999999998876
No 22
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.86 E-value=8.3e-21 Score=175.63 Aligned_cols=82 Identities=34% Similarity=0.583 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||+.||+++|.++|++||.|+.|.|+. +++++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 5678999999999999999999999999999999964 6788999999999999999999999999999999999999
Q ss_pred ccCCC
Q 021177 81 HGGRR 85 (316)
Q Consensus 81 ~~~~~ 85 (316)
.....
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86543
No 23
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.86 E-value=1.1e-21 Score=148.74 Aligned_cols=106 Identities=29% Similarity=0.434 Sum_probs=95.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
...++++|||+|||+++|+++|+++|+.||.|..+.++.++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 45789999999999999999999999999999999998888889999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCC
Q 021177 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD 135 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~ 135 (316)
..... .+++...++++|+++|.+||.
T Consensus 84 ~~~~~----------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF----------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT----------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh----------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 54321 346677889999999999985
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=2.2e-21 Score=142.87 Aligned_cols=78 Identities=26% Similarity=0.425 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
..++|||+|||+++|+++|+++|++||+|..+.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.+|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 457899999999999999999999999999999953 57889999999999999999999999999999999999987
Q ss_pred c
Q 021177 82 G 82 (316)
Q Consensus 82 ~ 82 (316)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=139.57 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..|.++|||+|||+++|+++|+++|++||+|.++.|+. +++++|||||+|.+.++|++|++.|||..++|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 46889999999999999999999999999999999954 578899999999999999999999999999999999999
Q ss_pred cccC
Q 021177 80 AHGG 83 (316)
Q Consensus 80 a~~~ 83 (316)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8643
No 26
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5e-20 Score=138.24 Aligned_cols=83 Identities=59% Similarity=1.058 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++|||||+|.+.++|++|++.||+..|.|+.|.|+++.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 34678999999999999999999999999999999998888889999999999999999999999999999999999988
Q ss_pred cCC
Q 021177 82 GGR 84 (316)
Q Consensus 82 ~~~ 84 (316)
...
T Consensus 98 ~~~ 100 (109)
T 1x4a_A 98 SGR 100 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 27
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=137.84 Aligned_cols=85 Identities=27% Similarity=0.492 Sum_probs=78.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEE
Q 021177 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (316)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~ 78 (316)
|..++.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3467889999999999999999999999999999999965 67889999999999999999999999999999999999
Q ss_pred EcccCCC
Q 021177 79 LAHGGRR 85 (316)
Q Consensus 79 ~a~~~~~ 85 (316)
++.....
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9986543
No 28
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=2.4e-20 Score=137.96 Aligned_cols=100 Identities=41% Similarity=0.583 Sum_probs=83.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCCCC
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (316)
++|||+|||+++|+++|+++|++||+|..+.+..+ ++|||||+|.+.++|++|++.|||..+.|+.|.|.++......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999765 7899999999999999999999999999999999999875422
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEeCCC
Q 021177 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLP 118 (316)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~ 118 (316)
... +..........++||+||+
T Consensus 79 ~~~----------~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SRF----------DRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCC----------CSCCCSCCCCSCCCSCCCC
T ss_pred ccC----------CCCCccccCCCceecCCCC
Confidence 111 1111122345689999986
No 29
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-20 Score=135.82 Aligned_cols=79 Identities=18% Similarity=0.320 Sum_probs=71.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhC-CCcccCCceEEEEEc
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELA 80 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l-~g~~~~g~~l~v~~a 80 (316)
+++|||+|||+++|+++|+++|++|| +|.+|+|+. ++.++|||||+|.+.++|++|++.| ++..++|++|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 899999854 5789999999999999999999877 456899999999998
Q ss_pred ccCC
Q 021177 81 HGGR 84 (316)
Q Consensus 81 ~~~~ 84 (316)
.+..
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7644
No 30
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-19 Score=132.61 Aligned_cols=83 Identities=31% Similarity=0.476 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..++++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 56889999999999999999999999999999999954 578899999999999999999999999999999999999
Q ss_pred cccCCC
Q 021177 80 AHGGRR 85 (316)
Q Consensus 80 a~~~~~ 85 (316)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987654
No 31
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.1e-20 Score=136.17 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCC--CcccCCceEEEEE
Q 021177 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVEL 79 (316)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~--g~~~~g~~l~v~~ 79 (316)
+..+.++|||+|||+++|+++|+++|++||+|.+|.|+.+ +|||||+|.+.++|++|++.|+ +..|.|++|.|.+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3468899999999999999999999999999999999754 8999999999999999999776 4789999999999
Q ss_pred cccCCCC
Q 021177 80 AHGGRRH 86 (316)
Q Consensus 80 a~~~~~~ 86 (316)
+......
T Consensus 89 A~~~~~~ 95 (105)
T 1sjq_A 89 SNHKELK 95 (105)
T ss_dssp CSSSSCC
T ss_pred cCCCCCC
Confidence 9875543
No 32
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=8.2e-20 Score=133.24 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcc--cCCceEEEEEc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN--FDGYRLRVELA 80 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~--~~g~~l~v~~a 80 (316)
..|+++|||+|||.++|+++|+++|++||.|.++.+.. .+|||||+|.+.++|.+|++.|||.. +.|++|.|+++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 46899999999999999999999999999999999974 48999999999999999999999875 78999999998
Q ss_pred ccCC
Q 021177 81 HGGR 84 (316)
Q Consensus 81 ~~~~ 84 (316)
+.+.
T Consensus 95 ~~k~ 98 (100)
T 3r27_A 95 TSQK 98 (100)
T ss_dssp SCSC
T ss_pred cccc
Confidence 8643
No 33
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=130.78 Aligned_cols=82 Identities=29% Similarity=0.447 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..++++|||+|||+++|+++|+++|++||+|..+.+.. ++.++|||||+|.+.++|++|++.|||..+.|+.|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45889999999999999999999999999999999965 478899999999999999999999999999999999999
Q ss_pred cccCC
Q 021177 80 AHGGR 84 (316)
Q Consensus 80 a~~~~ 84 (316)
+....
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 98654
No 34
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=139.58 Aligned_cols=81 Identities=20% Similarity=0.382 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~ 78 (316)
..|+++|||+|||+.+++++|+ ++|++||+|.+|.+..++.++|||||+|.+.++|.+|+..|||..|.|++|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4678999999999999999876 699999999999998888999999999999999999999999999999999999
Q ss_pred EcccC
Q 021177 79 LAHGG 83 (316)
Q Consensus 79 ~a~~~ 83 (316)
|+...
T Consensus 106 ~a~~~ 110 (127)
T 2a3j_A 106 FSETP 110 (127)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 98854
No 35
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=9e-20 Score=134.07 Aligned_cols=83 Identities=24% Similarity=0.409 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc------CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~------~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~ 76 (316)
+.+.++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 56899999999999999999999999999999999964 336789999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 021177 77 VELAHGGRR 85 (316)
Q Consensus 77 v~~a~~~~~ 85 (316)
|.++.....
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999986553
No 36
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1.3e-19 Score=132.63 Aligned_cols=80 Identities=29% Similarity=0.625 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
|+++|||+|||.++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 689999999999999999999999999999999964 47889999999999999999999999999999999999998
Q ss_pred cCC
Q 021177 82 GGR 84 (316)
Q Consensus 82 ~~~ 84 (316)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 37
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=1.2e-19 Score=129.71 Aligned_cols=79 Identities=33% Similarity=0.541 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEec---cCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~---~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||+++|+++|+++|++||+|..+.++ .++.++|||||+|.+.++|++|++.|||..+.|+.|.|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4688999999999999999999999999999999994 3577899999999999999999999999999999999999
Q ss_pred cc
Q 021177 80 AH 81 (316)
Q Consensus 80 a~ 81 (316)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 38
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=132.01 Aligned_cols=83 Identities=23% Similarity=0.419 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEE-Eecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDI-DLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i-~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~ 78 (316)
..++++|||+|||+++|+++|+++|++||.|..+ .|+. ++.++|||||+|.++++|++|+..|||..+.|+.|.|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4588999999999999999999999999999999 8854 57889999999999999999999999999999999999
Q ss_pred EcccCCC
Q 021177 79 LAHGGRR 85 (316)
Q Consensus 79 ~a~~~~~ 85 (316)
++.....
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9986553
No 39
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.5e-19 Score=131.17 Aligned_cols=82 Identities=23% Similarity=0.492 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||.++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|++ |||..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 46889999999999999999999999999999999964 57789999999999999999999 999999999999999
Q ss_pred cccCCC
Q 021177 80 AHGGRR 85 (316)
Q Consensus 80 a~~~~~ 85 (316)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 986553
No 40
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=4e-19 Score=134.56 Aligned_cols=84 Identities=24% Similarity=0.425 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||+++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35788999999999999999999999999999999954 577899999999999999999999999999999999999
Q ss_pred cccCCCC
Q 021177 80 AHGGRRH 86 (316)
Q Consensus 80 a~~~~~~ 86 (316)
+......
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9876543
No 41
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.1e-19 Score=127.83 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
-.+.-|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|++|++.|||..+.|++|.|++|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 3577899999999999999999999999999999964 69999999999999999999999999999999999984
No 42
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.8e-19 Score=131.98 Aligned_cols=83 Identities=30% Similarity=0.442 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccC-CCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~-~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
..+.++|||+|||+++|+++|+++|++||.|..|.|..+ ..++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 467899999999999999999999999999999999653 4468999999999999999999999999999999999998
Q ss_pred cCCC
Q 021177 82 GGRR 85 (316)
Q Consensus 82 ~~~~ 85 (316)
....
T Consensus 92 ~~~~ 95 (103)
T 2cqi_A 92 TPSS 95 (103)
T ss_dssp CTTC
T ss_pred CCcc
Confidence 7553
No 43
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.7e-19 Score=132.47 Aligned_cols=83 Identities=29% Similarity=0.441 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 36789999999999999999999999999999999955 578899999999999999999999999999999999999
Q ss_pred cccCCC
Q 021177 80 AHGGRR 85 (316)
Q Consensus 80 a~~~~~ 85 (316)
+.....
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 987553
No 44
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=6.1e-19 Score=141.24 Aligned_cols=138 Identities=17% Similarity=0.052 Sum_probs=101.7
Q ss_pred CCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCC
Q 021177 42 PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSA 121 (316)
Q Consensus 42 ~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~ 121 (316)
..++|||||+|.++++|++|+..+++....+..+.+........... ...............+|||+|||+.+
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~v~nl~~~~ 82 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE-------GSHHHHHHMDVEGMTSLKVDNLTYRT 82 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-------CCCCSSCCCCCCBCCEEEEESCCTTC
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-------cccccccccCCCCCCEEEEeCCCCCC
Confidence 36799999999999999999988776433333333221111000000 00001111223456799999999999
Q ss_pred CHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeeccCC
Q 021177 122 SWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (316)
Q Consensus 122 t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~~r 190 (316)
++++|+++|.+||.|..+.+..++. .|||||+|.+.++|..|++.|||..+.| ..|.|..+...+
T Consensus 83 ~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~~ 151 (158)
T 2kn4_A 83 SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARYGR 151 (158)
T ss_dssp CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS----SEEEEEEECCSS
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEECCCCC
Confidence 9999999999999999999988753 3799999999999999999999999998 588898887653
No 45
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=1.6e-19 Score=131.15 Aligned_cols=83 Identities=25% Similarity=0.423 Sum_probs=77.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~-~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
...+.++|||+|||+++|+++|+++|++||+|..+.+.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 357889999999999999999999999999999999965 6778999999999999999999999999999999999998
Q ss_pred ccCC
Q 021177 81 HGGR 84 (316)
Q Consensus 81 ~~~~ 84 (316)
....
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8654
No 46
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=130.52 Aligned_cols=80 Identities=26% Similarity=0.428 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||.++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|++|++.|||..++|+.|.|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 45788999999999999999999999999999999954 577899999999999999999999999999999999999
Q ss_pred ccc
Q 021177 80 AHG 82 (316)
Q Consensus 80 a~~ 82 (316)
+..
T Consensus 83 a~~ 85 (87)
T 3bs9_A 83 ATR 85 (87)
T ss_dssp EC-
T ss_pred cCC
Confidence 875
No 47
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=133.25 Aligned_cols=83 Identities=40% Similarity=0.578 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 35789999999999999999999999999999999964 478899999999999999999999999999999999999
Q ss_pred cccCCC
Q 021177 80 AHGGRR 85 (316)
Q Consensus 80 a~~~~~ 85 (316)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 986543
No 48
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.80 E-value=5.6e-20 Score=134.89 Aligned_cols=84 Identities=26% Similarity=0.513 Sum_probs=76.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEE
Q 021177 1 MSSRSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (316)
Q Consensus 1 ~~~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~ 76 (316)
|+..++++|||+|||+++|+++|+ ++|++||.|..|.+..++.++|||||+|.+.++|.+|+..|||..+.|+.|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456899999999999999999999 9999999999999987777889999999999999999999999999999999
Q ss_pred EEEcccCC
Q 021177 77 VELAHGGR 84 (316)
Q Consensus 77 v~~a~~~~ 84 (316)
|.++....
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99988643
No 49
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=136.13 Aligned_cols=82 Identities=17% Similarity=0.228 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCC--cccCCceEEEEEc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELA 80 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g--~~~~g~~l~v~~a 80 (316)
..|+++|||+|||+++|+++|+++|++||+|.+|.|+.+ +|||||+|.+.++|++|++.|++ ..|.|++|.|.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 468899999999999999999999999999999999754 79999999999999999998874 6899999999999
Q ss_pred ccCCCCC
Q 021177 81 HGGRRHS 87 (316)
Q Consensus 81 ~~~~~~~ 87 (316)
.......
T Consensus 105 ~~k~~~~ 111 (119)
T 2ad9_A 105 NHKELKT 111 (119)
T ss_dssp SSSSCCC
T ss_pred cCCCCCc
Confidence 8765443
No 50
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=8.5e-20 Score=134.38 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCc--ccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY--NFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~--~~~g~~l~v~~ 79 (316)
.+|+++|||+|||+ ++|+++|+++|++||+|.+|.|+.+ +|||||+|.+.++|.+|++.||+. .|.|++|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 46899999999999 9999999999999999999999753 689999999999999999988864 59999999999
Q ss_pred cccCC
Q 021177 80 AHGGR 84 (316)
Q Consensus 80 a~~~~ 84 (316)
+....
T Consensus 89 a~~~~ 93 (102)
T 1x4d_A 89 SQKYK 93 (102)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 98544
No 51
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=4.3e-19 Score=164.16 Aligned_cols=159 Identities=15% Similarity=0.152 Sum_probs=102.6
Q ss_pred HHHHhhcCCCeeEEEe----ccC-CCCCcEE-----EEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCCCCCCCCCC
Q 021177 23 VEDLFYKYGPIVDIDL----KIP-PRPPGYA-----FLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDR 92 (316)
Q Consensus 23 L~~~F~~~G~V~~i~i----~~~-~~~~g~a-----FVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~ 92 (316)
|..||.++|+|..|.. +.. ....+|+ |++|.+..++..++..++.....++............... .
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~---~ 85 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVET---E 85 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHH---h
Confidence 7899999999988733 211 1234444 8888887766655544443322221100000000000000 0
Q ss_pred CCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhC
Q 021177 93 YSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLD 168 (316)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~ 168 (316)
...+...........+..+|||+|||..+++++|.++|.+||.|..|.|+.+.. .|||||+|.+.++|.+|+..||
T Consensus 86 ~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 165 (437)
T 3pgw_S 86 LKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 (437)
T ss_pred hhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC
Confidence 000000001111223467999999999999999999999999999999987643 3799999999999999999999
Q ss_pred CceecccccceEEEEEeecc
Q 021177 169 RSEFRNAFSRSYVRVREYDS 188 (316)
Q Consensus 169 g~~~~g~~~~~~i~v~~~~~ 188 (316)
|..|.| ..|.|..+..
T Consensus 166 g~~i~g----r~i~V~~a~~ 181 (437)
T 3pgw_S 166 GKKIDG----RRVLVDVERG 181 (437)
T ss_pred CCEECC----EEEEEEEeCC
Confidence 999999 5788877664
No 52
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=133.12 Aligned_cols=82 Identities=33% Similarity=0.528 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 5789999999999999999999999999999999954 4788999999999999999999999999999999999999
Q ss_pred ccCCC
Q 021177 81 HGGRR 85 (316)
Q Consensus 81 ~~~~~ 85 (316)
.....
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 53
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=133.06 Aligned_cols=83 Identities=24% Similarity=0.396 Sum_probs=76.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCee-EEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCce---
Q 021177 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIV-DIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR--- 74 (316)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~-~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~--- 74 (316)
+..++++|||+|||+++|+++|+++|++||+|. .+.|.. ++.++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 467899999999999999999999999999999 999953 5788899999999999999999999999999999
Q ss_pred -EEEEEcccCC
Q 021177 75 -LRVELAHGGR 84 (316)
Q Consensus 75 -l~v~~a~~~~ 84 (316)
|.|.++....
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999988654
No 54
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.2e-19 Score=130.03 Aligned_cols=78 Identities=27% Similarity=0.442 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||+++|+++|+++|++||+|..+.+.. ++.++|||||+|.+.++|++|++.|||..+.|+.|.|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 5678999999999999999999999999999999965 4778999999999999999999999999999999999997
Q ss_pred c
Q 021177 81 H 81 (316)
Q Consensus 81 ~ 81 (316)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 55
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=8.3e-20 Score=133.03 Aligned_cols=79 Identities=19% Similarity=0.337 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC--eeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCc----ccCCce
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGP--IVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGY----NFDGYR 74 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~--V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~----~~~g~~ 74 (316)
..-.||||+|||+++|+++|+++|++||. |.+|+++. ++.++|||||+|.+.++|++|++.|||. .++|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45678999999999999999999999995 67888854 5889999999999999999999999997 489999
Q ss_pred EEEEEccc
Q 021177 75 LRVELAHG 82 (316)
Q Consensus 75 l~v~~a~~ 82 (316)
|.|+||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 56
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.3e-19 Score=133.64 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
..++++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 46789999999999999999999999999999999954 5677899999999999999999999999999999999998
Q ss_pred ccCCC
Q 021177 81 HGGRR 85 (316)
Q Consensus 81 ~~~~~ 85 (316)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 76543
No 57
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=4.2e-19 Score=140.95 Aligned_cols=138 Identities=20% Similarity=0.137 Sum_probs=110.3
Q ss_pred CCCCcEEEEEECCHHHHHHHHHhC-CCcccCCceEEEEEcccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCC
Q 021177 42 PRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS 120 (316)
Q Consensus 42 ~~~~g~aFVef~~~e~A~~A~~~l-~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~ 120 (316)
...+|+++|+|.+.++|++|++.| ||..++| .|.+.++......... .................+|||+|||+.
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~V~nl~~~ 84 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEG----SHHHHHHMHRDSCPLDCKVYVGNLGNN 84 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECS----SSSCCCCSCSSSSTTSCEEEEESCCSC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccc----cccccccccccCCCCCCEEEEeCCCCC
Confidence 467899999999999999999999 9999999 9999987643211000 000011112233455789999999999
Q ss_pred CCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeeccC
Q 021177 121 ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (316)
Q Consensus 121 ~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (316)
+++++|+++|.+||.|..+.+..+ ..|||||+|.+.++|..|+..|||..+.| ..|.|..+.++
T Consensus 85 ~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 148 (150)
T 2i2y_A 85 GNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCG----CRVRVELSNGE 148 (150)
T ss_dssp CSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSS----SCCEEEECCCC
T ss_pred CCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEcCCC
Confidence 999999999999999999999887 45799999999999999999999999998 47788776554
No 58
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=131.82 Aligned_cols=82 Identities=24% Similarity=0.469 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
..+.++|||+|||+++|+++|+++|++||+|..+.|.. ++.++|||||+|.+.++|++|++.|||..+.|+.|.|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 35689999999999999999999999999999999954 5677899999999999999999999999999999999998
Q ss_pred ccCC
Q 021177 81 HGGR 84 (316)
Q Consensus 81 ~~~~ 84 (316)
.+..
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8654
No 59
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=2.3e-19 Score=127.65 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=72.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
+.+|||+|||+++|+++|+++|++||+|..+.++. ++.++|||||+|.+.++|++|+..|||..++|+.|.|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999953 578899999999999999999999999999999999999875
Q ss_pred C
Q 021177 83 G 83 (316)
Q Consensus 83 ~ 83 (316)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 60
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.8e-19 Score=130.95 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhC--CCcccCCceEEEEEc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR--DGYNFDGYRLRVELA 80 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l--~g~~~~g~~l~v~~a 80 (316)
..|+++|||+|||+++|+++|+++|++||.|.+|.|..+ +|||||+|.+.++|++|++.| ++..+.|++|.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 468899999999999999999999999999999998754 899999999999999999976 567899999999999
Q ss_pred ccCCC
Q 021177 81 HGGRR 85 (316)
Q Consensus 81 ~~~~~ 85 (316)
.....
T Consensus 89 ~~~~~ 93 (101)
T 2cq1_A 89 NHKEL 93 (101)
T ss_dssp SCSSC
T ss_pred CcccC
Confidence 86553
No 61
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=131.96 Aligned_cols=83 Identities=33% Similarity=0.577 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 36889999999999999999999999999999999965 567899999999999999999999999999999999999
Q ss_pred cccCCC
Q 021177 80 AHGGRR 85 (316)
Q Consensus 80 a~~~~~ 85 (316)
+.....
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 986553
No 62
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.2e-19 Score=132.39 Aligned_cols=83 Identities=23% Similarity=0.336 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~-~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
..+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 46789999999999999999999999999999999965 56788999999999999999999999999999999999998
Q ss_pred cCCC
Q 021177 82 GGRR 85 (316)
Q Consensus 82 ~~~~ 85 (316)
....
T Consensus 92 ~~~~ 95 (103)
T 2d9p_A 92 RKEE 95 (103)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7553
No 63
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=133.05 Aligned_cols=82 Identities=34% Similarity=0.558 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 35689999999999999999999999999999999954 578899999999999999999999999999999999999
Q ss_pred cccCC
Q 021177 80 AHGGR 84 (316)
Q Consensus 80 a~~~~ 84 (316)
+....
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 88654
No 64
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=7.7e-19 Score=130.30 Aligned_cols=78 Identities=21% Similarity=0.424 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
.+.++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|++.|||..|.|+.|.|.++...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 577999999999999999999999999999999997 679999999999999999999999999999999999876
Q ss_pred CCC
Q 021177 84 RRH 86 (316)
Q Consensus 84 ~~~ 86 (316)
...
T Consensus 84 ~~~ 86 (103)
T 2dgu_A 84 DQK 86 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 65
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.2e-19 Score=130.00 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 4 RSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
.+.++|||+|||+++|+++|+ ++|++||+|.+|.|+.+...+|||||+|.+.++|++|++.|||..++|+.|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 467899999999999999999 9999999999999976543489999999999999999999999999999999999
Q ss_pred cccCC
Q 021177 80 AHGGR 84 (316)
Q Consensus 80 a~~~~ 84 (316)
+....
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 97643
No 66
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.3e-19 Score=131.47 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCc--ccCCceEEEEEc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY--NFDGYRLRVELA 80 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~--~~~g~~l~v~~a 80 (316)
..|+++|||+|||+++|+++|+++|++||+|..|.|... +|||||+|.+.++|.+|++.|++. .+.|++|.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 357899999999999999999999999999999998743 899999999999999999988664 589999999999
Q ss_pred ccCCC
Q 021177 81 HGGRR 85 (316)
Q Consensus 81 ~~~~~ 85 (316)
.....
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 87553
No 67
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.7e-19 Score=129.75 Aligned_cols=83 Identities=24% Similarity=0.442 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccC-CCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~-~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
..+.++|||+|||+++|+++|+++|++||.|..|.|..+ ..++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 367899999999999999999999999999999999653 3579999999999999999999999999999999999998
Q ss_pred cCCC
Q 021177 82 GGRR 85 (316)
Q Consensus 82 ~~~~ 85 (316)
....
T Consensus 92 ~~~~ 95 (103)
T 2cq3_A 92 ARVM 95 (103)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 7653
No 68
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=131.65 Aligned_cols=81 Identities=26% Similarity=0.405 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||+++|+++|+++|++||+|..|.|.. +++++|||||+|.+.++|++|+..|++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 46789999999999999999999999999999999964 578899999999999999999999998 89999999999
Q ss_pred cccCC
Q 021177 80 AHGGR 84 (316)
Q Consensus 80 a~~~~ 84 (316)
+....
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97644
No 69
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8e-19 Score=131.10 Aligned_cols=83 Identities=24% Similarity=0.440 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc----CCCCCcEEEEEECCHHHHHHHHHhC-CCcccCCceEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI----PPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRV 77 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~----~~~~~g~aFVef~~~e~A~~A~~~l-~g~~~~g~~l~v 77 (316)
..+.++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++|+..| ||..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 36789999999999999999999999999999999943 5788999999999999999999999 999999999999
Q ss_pred EEcccCCC
Q 021177 78 ELAHGGRR 85 (316)
Q Consensus 78 ~~a~~~~~ 85 (316)
.++.....
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987543
No 70
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.5e-19 Score=127.02 Aligned_cols=78 Identities=33% Similarity=0.642 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
..+.++|||+|||+++|+++|+++|++||+|..+.+. +|||||+|.+.++|++|++.|||..+.|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 4688999999999999999999999999999999998 78999999999999999999999999999999999886
Q ss_pred CCC
Q 021177 83 GRR 85 (316)
Q Consensus 83 ~~~ 85 (316)
...
T Consensus 80 ~~~ 82 (90)
T 2dnq_A 80 KSK 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 71
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.5e-19 Score=132.87 Aligned_cols=81 Identities=25% Similarity=0.502 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.++++|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4678899999999999999999999999999999954 4778999999999999999999999999999999999998
Q ss_pred ccCC
Q 021177 81 HGGR 84 (316)
Q Consensus 81 ~~~~ 84 (316)
....
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8643
No 72
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=5.7e-19 Score=131.46 Aligned_cols=82 Identities=26% Similarity=0.355 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCC---ceEEEE
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG---YRLRVE 78 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g---~~l~v~ 78 (316)
.+.++|||+|||+++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..+.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4689999999999999999999999999999999964 56778999999999999999999999999998 999999
Q ss_pred EcccCCC
Q 021177 79 LAHGGRR 85 (316)
Q Consensus 79 ~a~~~~~ 85 (316)
++.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987653
No 73
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=5.3e-19 Score=127.18 Aligned_cols=81 Identities=27% Similarity=0.516 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccC---CC-CCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PR-PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~---~~-~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
-..++|||+|||+++|+++|+++|++||.|..+.++.+ +. ++|||||+|.+.++|++|++.|||..++|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 46789999999999999999999999999999999543 22 799999999999999999999999999999999999
Q ss_pred cccCC
Q 021177 80 AHGGR 84 (316)
Q Consensus 80 a~~~~ 84 (316)
+....
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87543
No 74
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=2.6e-19 Score=130.77 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.++++|++|++.|||..+.|+.|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 46789999999999999999999999999999999964 4677899999999999999999999999999999999997
Q ss_pred cc
Q 021177 81 HG 82 (316)
Q Consensus 81 ~~ 82 (316)
..
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 75
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3e-19 Score=130.42 Aligned_cols=80 Identities=34% Similarity=0.544 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..++++|||+|||+++|+++|+++|++||+|..+.++. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35788999999999999999999999999999999964 467889999999999999999999999999999999999
Q ss_pred ccc
Q 021177 80 AHG 82 (316)
Q Consensus 80 a~~ 82 (316)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 76
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=3.9e-19 Score=134.63 Aligned_cols=82 Identities=20% Similarity=0.426 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||+++|+++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4678999999999999999999999999999999954 5778899999999999999999999999999999999998
Q ss_pred ccCCC
Q 021177 81 HGGRR 85 (316)
Q Consensus 81 ~~~~~ 85 (316)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 86553
No 77
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.7e-19 Score=130.87 Aligned_cols=81 Identities=25% Similarity=0.444 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccC----CCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~----~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~ 78 (316)
..+.++|||+|||+++|+++|+++|+.|| |..|.|+.+ +.++|||||+|.+.++|++|+ .|||..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 46789999999999999999999999999 999999653 778999999999999999999 799999999999999
Q ss_pred EcccCCC
Q 021177 79 LAHGGRR 85 (316)
Q Consensus 79 ~a~~~~~ 85 (316)
++.....
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9986543
No 78
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=131.14 Aligned_cols=82 Identities=21% Similarity=0.438 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCC------CcccCCce
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRD------GYNFDGYR 74 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~------g~~~~g~~ 74 (316)
.+.++|||+|||+++|+++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|++|+..|| |..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 5789999999999999999999999999999999964 57889999999999999999999999 99999999
Q ss_pred EEEEEcccCCC
Q 021177 75 LRVELAHGGRR 85 (316)
Q Consensus 75 l~v~~a~~~~~ 85 (316)
|.|.++.....
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999886543
No 79
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=5.5e-19 Score=132.71 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||+++|+++|+++|++||.|..+.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 5678899999999999999999999999999999953 5788999999999999999999999999999999999998
Q ss_pred ccCC
Q 021177 81 HGGR 84 (316)
Q Consensus 81 ~~~~ 84 (316)
....
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 8654
No 80
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=126.57 Aligned_cols=78 Identities=36% Similarity=0.635 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
..+.++|||+|||+++|+++|+++|++||.|..+.+. ++||||+|.+.++|++|+..|||..+.|+.|.|.++..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4678999999999999999999999999999999997 66999999999999999999999999999999999986
Q ss_pred CCC
Q 021177 83 GRR 85 (316)
Q Consensus 83 ~~~ 85 (316)
...
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 81
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.2e-19 Score=131.48 Aligned_cols=78 Identities=15% Similarity=0.398 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
.+.++|||+|||+++|+++|.++|++||+|.+|.|+. ++.++|||||+|.++++|++|+. ++|..++|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 4678999999999999999999999999999999965 37789999999999999999999 99999999999999876
Q ss_pred c
Q 021177 82 G 82 (316)
Q Consensus 82 ~ 82 (316)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 82
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=1.7e-19 Score=133.08 Aligned_cols=80 Identities=24% Similarity=0.365 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCC------CCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCC-
Q 021177 3 SRSSRTLYVGNLPG------DTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG- 72 (316)
Q Consensus 3 ~~~~~~l~V~nLp~------~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g- 72 (316)
...+++|||+|||. ++++++|+++|++||.|..+.|+. +++++|||||+|.+.++|++|++.|||..+.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34678999999999 999999999999999999999953 57899999999999999999999999999999
Q ss_pred ceEEEEEccc
Q 021177 73 YRLRVELAHG 82 (316)
Q Consensus 73 ~~l~v~~a~~ 82 (316)
+.|.|.++.+
T Consensus 83 r~l~V~~a~~ 92 (100)
T 3ns6_A 83 HRLFLYTMKD 92 (100)
T ss_dssp CBCEEEESHH
T ss_pred eEEEEEECch
Confidence 9999999875
No 83
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=7.7e-19 Score=130.98 Aligned_cols=83 Identities=19% Similarity=0.339 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCccc---CCceEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---DGYRLR 76 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~---~g~~l~ 76 (316)
..+.++|||+|||.++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 46789999999999999999999999999999999965 578899999999999999999999999887 899999
Q ss_pred EEEcccCCC
Q 021177 77 VELAHGGRR 85 (316)
Q Consensus 77 v~~a~~~~~ 85 (316)
|.++.....
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999986543
No 84
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-18 Score=128.37 Aligned_cols=77 Identities=23% Similarity=0.322 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCC-----ceEEEE
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-----YRLRVE 78 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g-----~~l~v~ 78 (316)
.+.++|||+|||+++|+++|+++|++||+|..|.|+.+ |||||+|.+.++|++|++.|||..|.| +.|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 56789999999999999999999999999999999764 899999999999999999999999999 999999
Q ss_pred EcccCC
Q 021177 79 LAHGGR 84 (316)
Q Consensus 79 ~a~~~~ 84 (316)
++....
T Consensus 89 ~a~~~~ 94 (108)
T 1x4c_A 89 VDGPRS 94 (108)
T ss_dssp ESSCCS
T ss_pred eCCCCC
Confidence 998754
No 85
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=9.1e-20 Score=131.90 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=68.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G--~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
.+|||+|||+++|+++|+++|++|| .|.++.+.. ++.++|||||+|.+.++|++|++.|||..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999854 67889999999999999999999999999999999999988
Q ss_pred cCC
Q 021177 82 GGR 84 (316)
Q Consensus 82 ~~~ 84 (316)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 86
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=126.32 Aligned_cols=77 Identities=31% Similarity=0.566 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
..+.++|||+|||+++|+++|+++|++||.|..+.+. ++||||+|.+.++|++|+..|||..+.|+.|.|.++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 4678999999999999999999999999999999997 66999999999999999999999999999999999986
Q ss_pred CC
Q 021177 83 GR 84 (316)
Q Consensus 83 ~~ 84 (316)
..
T Consensus 81 ~~ 82 (90)
T 2dnp_A 81 GQ 82 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 87
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=128.09 Aligned_cols=79 Identities=27% Similarity=0.501 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccC--CceEEEEEc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD--GYRLRVELA 80 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~--g~~l~v~~a 80 (316)
..++++|||+|||+++|+++|+++|++||+|..+.+... +|||||+|.+.++|++|++.|||..+. |+.|.|.++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 357899999999999999999999999999999999743 789999999999999999999999999 999999998
Q ss_pred ccCC
Q 021177 81 HGGR 84 (316)
Q Consensus 81 ~~~~ 84 (316)
....
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8643
No 88
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=4.7e-19 Score=136.82 Aligned_cols=82 Identities=34% Similarity=0.570 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..++++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 46789999999999999999999999999999999964 578899999999999999999999999999999999999
Q ss_pred cccCC
Q 021177 80 AHGGR 84 (316)
Q Consensus 80 a~~~~ 84 (316)
+....
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 88654
No 89
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.2e-18 Score=129.24 Aligned_cols=81 Identities=27% Similarity=0.520 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||+++|+++|+++|++|| |..|.|+. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 46789999999999999999999999997 99999954 4778999999999999999999 7999999999999999
Q ss_pred cccCCC
Q 021177 80 AHGGRR 85 (316)
Q Consensus 80 a~~~~~ 85 (316)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 886543
No 90
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.2e-18 Score=125.07 Aligned_cols=77 Identities=27% Similarity=0.551 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||+++|+++|+++|++||.|..+.++. ++.++|||||+|.+.++|++|++ +++..++|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 46889999999999999999999999999999999953 57889999999999999999997 688899999999987
Q ss_pred c
Q 021177 80 A 80 (316)
Q Consensus 80 a 80 (316)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 91
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=6.6e-19 Score=133.97 Aligned_cols=79 Identities=20% Similarity=0.450 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35678999999999999999999999999999999964 578899999999999999999999999999999999998
Q ss_pred cc
Q 021177 80 AH 81 (316)
Q Consensus 80 a~ 81 (316)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 92
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=1.3e-18 Score=125.50 Aligned_cols=78 Identities=24% Similarity=0.474 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
+.++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|++|+ .|||..+.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999953 6788999999999999999999 799999999999999987
Q ss_pred cC
Q 021177 82 GG 83 (316)
Q Consensus 82 ~~ 83 (316)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 93
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=7.3e-19 Score=131.34 Aligned_cols=79 Identities=24% Similarity=0.395 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
..+.++|||+|||+.+|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..+.|+.|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 35789999999999999999999999999999999953 6778999999999999999999999999999999999997
Q ss_pred c
Q 021177 81 H 81 (316)
Q Consensus 81 ~ 81 (316)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 94
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=5.9e-19 Score=132.00 Aligned_cols=81 Identities=27% Similarity=0.479 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||+.+|+++|+++|++||.|..+.++. ++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45789999999999999999999999999999999953 577899999999999999999999999999999999999
Q ss_pred cccC
Q 021177 80 AHGG 83 (316)
Q Consensus 80 a~~~ 83 (316)
+...
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8753
No 95
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=129.78 Aligned_cols=80 Identities=28% Similarity=0.422 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHhhcCCCeeEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCc-eE
Q 021177 4 RSSRTLYVGNLPGDT------RMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RL 75 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~------t~~~L~~~F~~~G~V~~i~i~~-~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~-~l 75 (316)
..+++|||+|||+.+ |+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|.+|+..|||..|.|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 457899999999999 7899999999999999999963 678899999999999999999999999999998 99
Q ss_pred EEEEcccC
Q 021177 76 RVELAHGG 83 (316)
Q Consensus 76 ~v~~a~~~ 83 (316)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998743
No 96
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=8.2e-19 Score=129.18 Aligned_cols=79 Identities=29% Similarity=0.429 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccC
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~--------i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~ 71 (316)
..+.++|||+|||.++|+++|+++|++||.|.. +.+.. ++.++|||||+|.+.++|++|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 357899999999999999999999999999999 88853 5788999999999999999999999999999
Q ss_pred CceEEEEEcc
Q 021177 72 GYRLRVELAH 81 (316)
Q Consensus 72 g~~l~v~~a~ 81 (316)
|+.|.|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 97
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=4.7e-19 Score=125.49 Aligned_cols=72 Identities=29% Similarity=0.494 Sum_probs=67.2
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhhcCCCeeEEEec-cCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCc-eEEE
Q 021177 6 SRTLYVGNLPGDT------RMREVEDLFYKYGPIVDIDLK-IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RLRV 77 (316)
Q Consensus 6 ~~~l~V~nLp~~~------t~~~L~~~F~~~G~V~~i~i~-~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~-~l~v 77 (316)
+++|||+|||..+ |+++|+++|++||+|..+.|+ .++.++|||||+|.+.++|++|+..|||..++|+ +|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 789999999999999999996 3678999999999999999999999999999999 8876
No 98
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=1.1e-18 Score=134.44 Aligned_cols=83 Identities=24% Similarity=0.482 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||+++|+++|.++|++||.|..|.|+. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 4678999999999999999999999999999999953 6788999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 021177 81 HGGRRH 86 (316)
Q Consensus 81 ~~~~~~ 86 (316)
......
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 866543
No 99
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=8.6e-19 Score=131.20 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
...++|||+|||+++|+++|+++|++|| +|..+.+.. ..++|||||+|.+.++|++|++.|||..|+|+.|.|+++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4567999999999999999999999999 999999853 35799999999999999999999999999999999999875
Q ss_pred C
Q 021177 83 G 83 (316)
Q Consensus 83 ~ 83 (316)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 100
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.77 E-value=1.8e-18 Score=126.77 Aligned_cols=76 Identities=26% Similarity=0.506 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 3 SRSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 3 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
..++++|||+|||+ ++|+++|+++|+.||.|..+.+. +|||||+|.+.++|++|+..|||..+.|+.|.|++++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 46789999999998 99999999999999999999995 8999999999999999999999999999999999987
Q ss_pred cC
Q 021177 82 GG 83 (316)
Q Consensus 82 ~~ 83 (316)
..
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 101
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1e-18 Score=130.98 Aligned_cols=81 Identities=25% Similarity=0.464 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~-~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
..+.++|||+|||.++|+++|+++|++||+|..+.+.. .+.++|||||+|.+.++|++|+..|||..++|+.|.|.++.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999965 34579999999999999999999999999999999999987
Q ss_pred cC
Q 021177 82 GG 83 (316)
Q Consensus 82 ~~ 83 (316)
..
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 102
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.3e-18 Score=128.16 Aligned_cols=83 Identities=23% Similarity=0.316 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEec-c---CCCCCcEEEEEECCHHHHHHHHHhCC--CcccCCceE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP-IVDIDLK-I---PPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRL 75 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-V~~i~i~-~---~~~~~g~aFVef~~~e~A~~A~~~l~--g~~~~g~~l 75 (316)
+.+.++|||+|||+++|+++|+++|+.||. |..+.++ . ++.++|||||+|.+.++|++|+..|| +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 467899999999999999999999999998 9999996 3 45789999999999999999999996 589999999
Q ss_pred EEEEcccCCC
Q 021177 76 RVELAHGGRR 85 (316)
Q Consensus 76 ~v~~a~~~~~ 85 (316)
.|.++.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999986553
No 103
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=129.48 Aligned_cols=82 Identities=22% Similarity=0.336 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc-CCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcc-cCCceEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYK-YGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYN-FDGYRLRVE 78 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~-~~g~~l~v~ 78 (316)
..+.++|||+|||+++|+++|+++|++ ||.|..|.|+. ++.++|||||+|.+.++|++|++.|||.. +.|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 467899999999999999999999999 99999999954 67789999999999999999999999999 999999999
Q ss_pred EcccCC
Q 021177 79 LAHGGR 84 (316)
Q Consensus 79 ~a~~~~ 84 (316)
++....
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 987654
No 104
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-18 Score=134.73 Aligned_cols=83 Identities=31% Similarity=0.586 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||.++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999954 567899999999999999999999999999999999999
Q ss_pred cccCCC
Q 021177 80 AHGGRR 85 (316)
Q Consensus 80 a~~~~~ 85 (316)
+.....
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987654
No 105
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=131.05 Aligned_cols=83 Identities=27% Similarity=0.464 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCee--------EEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccC
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIV--------DIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~--------~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~ 71 (316)
..+.++|||+|||+++|+++|+++|++||.|. .|.|.. ++.++|||||+|.+.++|++|++.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 35789999999999999999999999999999 688853 5788999999999999999999999999999
Q ss_pred CceEEEEEcccCCC
Q 021177 72 GYRLRVELAHGGRR 85 (316)
Q Consensus 72 g~~l~v~~a~~~~~ 85 (316)
|+.|.|.++.....
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999886543
No 106
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5e-19 Score=133.14 Aligned_cols=81 Identities=22% Similarity=0.286 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHhhcCCCeeEEEeccC------CCCCcEEEEEECCHHHHHHHHHhCCCcccCCce
Q 021177 4 RSSRTLYVGNLPGDTRMREVE---DLFYKYGPIVDIDLKIP------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~---~~F~~~G~V~~i~i~~~------~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~ 74 (316)
.+.++|||+|||+++|+++|. ++|++||+|..+.|+.+ +.++|||||+|.++++|++|++.|||..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 467899999999999999999 99999999999999643 256699999999999999999999999999999
Q ss_pred EEEEEcccCC
Q 021177 75 LRVELAHGGR 84 (316)
Q Consensus 75 l~v~~a~~~~ 84 (316)
|.|.++....
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999988654
No 107
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4e-19 Score=132.71 Aligned_cols=80 Identities=25% Similarity=0.272 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCC--CcccCCceEEEE
Q 021177 2 SSRSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVE 78 (316)
Q Consensus 2 ~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~--g~~~~g~~l~v~ 78 (316)
...|+++|||+|||++ +|+++|+++|++||+|.+|.|.. ++|||||+|.+.++|++|++.|| +..|.|+.|.|.
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 3568999999999998 99999999999999999999963 48999999999999999999885 466999999999
Q ss_pred EcccCC
Q 021177 79 LAHGGR 84 (316)
Q Consensus 79 ~a~~~~ 84 (316)
++....
T Consensus 98 ~a~~~~ 103 (112)
T 1x4f_A 98 LSEKYK 103 (112)
T ss_dssp EECSCS
T ss_pred ECcccc
Confidence 987644
No 108
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-19 Score=128.41 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
+.++++|||+|||+++|+++|+++|++||+|..+.|+. ++.++|||||+|.+.++|++|++.|||..+.|+.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 46899999999999999999999999999999999954 578899999999999999999999999999999988766
Q ss_pred cc
Q 021177 80 AH 81 (316)
Q Consensus 80 a~ 81 (316)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 109
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=127.34 Aligned_cols=80 Identities=26% Similarity=0.398 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
.+.++|||+|||+++|+++|+++|++||.|.-+ ...++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~-~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVP-QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECC-BCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEE-ECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 578999999999999999999999999988322 2246788999999999999999999999999999999999999865
Q ss_pred C
Q 021177 84 R 84 (316)
Q Consensus 84 ~ 84 (316)
.
T Consensus 92 ~ 92 (101)
T 2fc9_A 92 G 92 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 110
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=129.21 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=72.6
Q ss_pred CCCCCCeEEE--cCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCccc-----CCce
Q 021177 2 SSRSSRTLYV--GNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF-----DGYR 74 (316)
Q Consensus 2 ~~~~~~~l~V--~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~-----~g~~ 74 (316)
..+|+++||| |||++++|+++|+++|++||+|..|.|+. .+|||||+|.+.++|++|++.|||..+ .|++
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4678999999 77999999999999999999999998864 389999999999999999999999988 6889
Q ss_pred EEEEEcccCC
Q 021177 75 LRVELAHGGR 84 (316)
Q Consensus 75 l~v~~a~~~~ 84 (316)
|.|.++....
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999987543
No 111
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=123.49 Aligned_cols=76 Identities=28% Similarity=0.460 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhC-CCcccCCceEEEEEcc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELAH 81 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l-~g~~~~g~~l~v~~a~ 81 (316)
..+.++|||+|||+++|+++|+++|++||.|..+.+.. ++|||||+|.+.++|++|+..| ||..+.|+.|.|+|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 35778999999999999999999999999999999975 3799999999999999999988 9999999999999974
No 112
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=3.5e-18 Score=128.05 Aligned_cols=80 Identities=18% Similarity=0.356 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||.++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..+ |..++|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 5789999999999999999999999999999999964 4788999999999999999999965 69999999999998
Q ss_pred ccCC
Q 021177 81 HGGR 84 (316)
Q Consensus 81 ~~~~ 84 (316)
....
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8654
No 113
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=127.11 Aligned_cols=78 Identities=32% Similarity=0.464 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
.+.++|||+|||+++|+++|+++|++||+|..|.+.. .+|||||+|.+.++|++|++.|||..+.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 5678999999999999999999999999999999974 3899999999999999999999999999999999998865
Q ss_pred C
Q 021177 84 R 84 (316)
Q Consensus 84 ~ 84 (316)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 114
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-18 Score=128.19 Aligned_cols=78 Identities=21% Similarity=0.385 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
.+.++|||+|||.++|+++|+++|++||.|..|.|..+ +|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 46789999999999999999999999999999999754 899999999999999999999999999999999998865
Q ss_pred C
Q 021177 84 R 84 (316)
Q Consensus 84 ~ 84 (316)
.
T Consensus 100 ~ 100 (109)
T 1x4g_A 100 P 100 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 115
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.3e-18 Score=127.31 Aligned_cols=77 Identities=25% Similarity=0.476 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 3 SRSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 3 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
..++++|||+|||+ ++|+++|+++|++||.|..+.+. +|||||+|.+.++|++|+..|||..+.|+.|.|+++.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 46889999999998 99999999999999999999996 8999999999999999999999999999999999998
Q ss_pred cCC
Q 021177 82 GGR 84 (316)
Q Consensus 82 ~~~ 84 (316)
...
T Consensus 82 ~~~ 84 (96)
T 2kvi_A 82 SNA 84 (96)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 116
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=130.74 Aligned_cols=81 Identities=23% Similarity=0.414 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCe----eEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPI----VDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V----~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
.++++|||+|||+++|+++|+++|+.||.| ..+.+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 577999999999999999999999999998 455554 788899999999999999999999999999999999999
Q ss_pred cccCCC
Q 021177 80 AHGGRR 85 (316)
Q Consensus 80 a~~~~~ 85 (316)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 987653
No 117
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=3.5e-18 Score=131.14 Aligned_cols=82 Identities=23% Similarity=0.362 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
.++++|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 5678999999999999999999999999999999954 57789999999999999999999999999999999999998
Q ss_pred cCCC
Q 021177 82 GGRR 85 (316)
Q Consensus 82 ~~~~ 85 (316)
....
T Consensus 113 ~~~~ 116 (124)
T 2kt5_A 113 SQID 116 (124)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6553
No 118
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=1e-18 Score=121.77 Aligned_cols=72 Identities=22% Similarity=0.376 Sum_probs=67.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
+|||+|||+++|+++|+++|++||+|..+.++. ++.++|||||+|.++++|++|++ |||..++|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999954 57889999999999999999998 9999999999999875
No 119
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=129.74 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.++++|++|+.. |+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 46889999999999999999999999999999999954 567889999999999999999997 99999999999999
Q ss_pred cccCCC
Q 021177 80 AHGGRR 85 (316)
Q Consensus 80 a~~~~~ 85 (316)
+.....
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 886553
No 120
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=1.9e-18 Score=129.25 Aligned_cols=77 Identities=29% Similarity=0.510 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
..++++|||+|||+++|+++|+++|++||.|..+.+. +|||||+|.+.++|++|+..|||..+.|+.|.|.++..
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3578999999999999999999999999999999998 89999999999999999999999999999999999886
Q ss_pred CC
Q 021177 83 GR 84 (316)
Q Consensus 83 ~~ 84 (316)
..
T Consensus 103 ~~ 104 (108)
T 2jvo_A 103 PA 104 (108)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 121
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.3e-18 Score=124.38 Aligned_cols=76 Identities=30% Similarity=0.433 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
.+.++|||+|||+++|+++|+++|++| |.|..+.+. +|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578899999999999999999999999 999999886 7899999999999999999999999999999999998
Q ss_pred cCC
Q 021177 82 GGR 84 (316)
Q Consensus 82 ~~~ 84 (316)
...
T Consensus 88 ~~~ 90 (99)
T 2cpd_A 88 PVD 90 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 122
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=137.63 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEec---cCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G--~V~~i~i~---~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
+.++|||+|||+++|+++|+++|+.|| .|.+|.|+ .++.++|||||+|.+.++|++|+..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 99999995 3688999999999999999999999999999999999999
Q ss_pred ccc
Q 021177 80 AHG 82 (316)
Q Consensus 80 a~~ 82 (316)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 123
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8.6e-19 Score=128.78 Aligned_cols=80 Identities=23% Similarity=0.325 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEec---cCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~---~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
...++|||+|||+++|+++|+++|++||.|..+.++ .++.++|||||+|.++++|++|++.|||..|.|+.|.|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456889999999999999999999999999866553 46788999999999999999999999999999999999998
Q ss_pred ccC
Q 021177 81 HGG 83 (316)
Q Consensus 81 ~~~ 83 (316)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 753
No 124
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=127.12 Aligned_cols=79 Identities=30% Similarity=0.487 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
..+++|||+|||+++|+++|+++|+.||.|. +.+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLT-WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEE-EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEE-cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4589999999999999999999999999997 5554 3567999999999999999999999999999999999998864
Q ss_pred C
Q 021177 84 R 84 (316)
Q Consensus 84 ~ 84 (316)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 125
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=128.70 Aligned_cols=81 Identities=36% Similarity=0.684 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||+++|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|++|++.|||..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 3568999999999999999999999999999999953 5778999999999999999999999999999999999998
Q ss_pred ccCC
Q 021177 81 HGGR 84 (316)
Q Consensus 81 ~~~~ 84 (316)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8644
No 126
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=4.5e-18 Score=135.91 Aligned_cols=82 Identities=33% Similarity=0.474 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4789999999999999999999999999999999954 4678899999999999999999999999999999999999
Q ss_pred ccCCC
Q 021177 81 HGGRR 85 (316)
Q Consensus 81 ~~~~~ 85 (316)
.....
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86543
No 127
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=125.25 Aligned_cols=79 Identities=25% Similarity=0.390 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCC-cccCCceEEEEE
Q 021177 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGP-IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVEL 79 (316)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g-~~~~g~~l~v~~ 79 (316)
+..+.++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..++|+.|.|.+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 3568899999999999999999999999999 7776664 389999999999999999999999 999999999999
Q ss_pred cccCC
Q 021177 80 AHGGR 84 (316)
Q Consensus 80 a~~~~ 84 (316)
+....
T Consensus 80 a~~~~ 84 (93)
T 2cqh_A 80 SVSKK 84 (93)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 98654
No 128
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.7e-18 Score=129.04 Aligned_cols=78 Identities=27% Similarity=0.303 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
++.++|||+|||+++|+++|+++|++||.|..|.|+. .+|||||+|.+.++|++|+..|||..|.|+.|.|+|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 3567999999999999999999999999999999874 5899999999999999999999999999999999998864
Q ss_pred C
Q 021177 84 R 84 (316)
Q Consensus 84 ~ 84 (316)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 129
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=128.03 Aligned_cols=78 Identities=27% Similarity=0.491 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc----CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI----PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~----~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
.+.++|||+|||.++|+++|+++|+.|| |..+.|.. +++++|||||+|.+.++|++|+ .|||..|.|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 5689999999999999999999999999 99999953 5788999999999999999999 7999999999999999
Q ss_pred cccC
Q 021177 80 AHGG 83 (316)
Q Consensus 80 a~~~ 83 (316)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8754
No 130
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-18 Score=127.72 Aligned_cols=79 Identities=24% Similarity=0.348 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
.+.++|||+|||+++|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|++|+..|||..+.|+.|.|.++...
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 567899999999999999999999999999887 567788999999999999999999999999999999999998764
Q ss_pred C
Q 021177 84 R 84 (316)
Q Consensus 84 ~ 84 (316)
.
T Consensus 92 ~ 92 (96)
T 1fjc_A 92 G 92 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 131
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.7e-18 Score=127.90 Aligned_cols=76 Identities=24% Similarity=0.428 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
...++|||+|||.++|+++|+++|+.||.|.++.+. .++|||||+|.+.++|++|+..|||..++|+.|.|.+++.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 357899999999999999999999999999999997 4589999999999999999999999999999999999864
No 132
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=2.2e-18 Score=133.53 Aligned_cols=81 Identities=19% Similarity=0.365 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE--EEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCc----ccCCc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGY----NFDGY 73 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~--i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~----~~~g~ 73 (316)
..+.++|||+|||+++|+++|+++|++||.|.. |+|+. ++.++|||||+|.+. +|.+|+..|||. .++|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 467899999999999999999999999999966 88854 678999999999999 999999999999 99999
Q ss_pred eEEEEEcccCC
Q 021177 74 RLRVELAHGGR 84 (316)
Q Consensus 74 ~l~v~~a~~~~ 84 (316)
.|.|.++....
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998754
No 133
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=7.6e-19 Score=128.29 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEec---cCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~---~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||+++|+++|+++|++||.|..+.++ .++.++|||||+|.++++|++|++.|||..|.|+.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 356899999999999999999999999999876664 35778999999999999999999999999999999999987
Q ss_pred cc
Q 021177 81 HG 82 (316)
Q Consensus 81 ~~ 82 (316)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 134
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=128.99 Aligned_cols=78 Identities=27% Similarity=0.458 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
+.++|||+|||.++|+++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 457999999999999999999999999999999964 4788999999999999999999 899999999999999987
Q ss_pred cC
Q 021177 82 GG 83 (316)
Q Consensus 82 ~~ 83 (316)
..
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 135
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.75 E-value=8.8e-18 Score=134.43 Aligned_cols=82 Identities=38% Similarity=0.568 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||+++|+++|+++|+.||.|..+.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3578999999999999999999999999999999964 6789999999999999999999999999999999999999
Q ss_pred ccCCC
Q 021177 81 HGGRR 85 (316)
Q Consensus 81 ~~~~~ 85 (316)
.....
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87553
No 136
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=121.28 Aligned_cols=73 Identities=16% Similarity=0.373 Sum_probs=68.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
++|||+|||+++|+++|+++|++||+|..+.++. ++.++|||||+|.+.++|++|+..++ ..++|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5799999999999999999999999999999954 57889999999999999999999888 9999999999986
No 137
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.9e-18 Score=134.48 Aligned_cols=82 Identities=38% Similarity=0.568 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||+++|+++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4678999999999999999999999999999999954 5788999999999999999999999999999999999999
Q ss_pred ccCCC
Q 021177 81 HGGRR 85 (316)
Q Consensus 81 ~~~~~ 85 (316)
.....
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86553
No 138
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.4e-18 Score=122.34 Aligned_cols=79 Identities=16% Similarity=0.288 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
..+.++|||+|||+++|+++|+++|+.| .|..+.|+. ++.++|||||+|.+.++|++|+. |||..|.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3578999999999999999999999999 999999964 57789999999999999999999 9999999999999998
Q ss_pred ccC
Q 021177 81 HGG 83 (316)
Q Consensus 81 ~~~ 83 (316)
...
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 764
No 139
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=5e-18 Score=127.42 Aligned_cols=75 Identities=28% Similarity=0.595 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 5 SSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 5 ~~~~l~V~nLp~~-~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
++++|||+|||++ +|+++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-----KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-----TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 9999999999999999999993 899999999999999999999999999999999998754
Q ss_pred C
Q 021177 84 R 84 (316)
Q Consensus 84 ~ 84 (316)
.
T Consensus 101 ~ 101 (110)
T 1wf1_A 101 K 101 (110)
T ss_dssp C
T ss_pred C
Confidence 4
No 140
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=6.7e-18 Score=129.55 Aligned_cols=79 Identities=27% Similarity=0.495 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEec---cCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~---~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
+.++|||+|||.++|+++|+++|++||.|..|.|. .++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45899999999999999999999999999999995 36788999999999999999999 699999999999999988
Q ss_pred cCC
Q 021177 82 GGR 84 (316)
Q Consensus 82 ~~~ 84 (316)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 141
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=7e-18 Score=132.17 Aligned_cols=78 Identities=33% Similarity=0.569 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||+++|+++|+++|++||+|..+.++. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35789999999999999999999999999999999954 578899999999999999999999999999999999987
Q ss_pred c
Q 021177 80 A 80 (316)
Q Consensus 80 a 80 (316)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 142
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.6e-18 Score=126.36 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
..+.++|||+|||+++|+++|+++|+.|+.|.-+.-..++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 36789999999999999999999999997666555455788899999999999999999999999999999999999986
Q ss_pred CC
Q 021177 83 GR 84 (316)
Q Consensus 83 ~~ 84 (316)
..
T Consensus 92 ~~ 93 (102)
T 2fc8_A 92 KG 93 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 143
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.1e-18 Score=125.27 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD-IDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~-i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||+++|+++|+++|++||.|.. |.|.. +++++|||||+|.++++|++|+.. |+..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 56799999999999999999999999999998 77754 678899999999999999999996 999999999999987
Q ss_pred ccCC
Q 021177 81 HGGR 84 (316)
Q Consensus 81 ~~~~ 84 (316)
....
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 6543
No 144
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=123.95 Aligned_cols=81 Identities=19% Similarity=0.400 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++|+. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 46789999999999999999999999999999999954 57889999999999999999999 57899999999999
Q ss_pred cccCCC
Q 021177 80 AHGGRR 85 (316)
Q Consensus 80 a~~~~~ 85 (316)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 886543
No 145
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.74 E-value=5.5e-18 Score=128.20 Aligned_cols=80 Identities=55% Similarity=1.010 Sum_probs=66.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceeccccc-ceEEEEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS-RSYVRVR 184 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~-~~~i~v~ 184 (316)
.....+|||+|||+.+++++|+++|.+||.|..+.+..+ +||||+|.+.++|++|++.||+..+.|+.. ...+++.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 356789999999999999999999999999999999877 799999999999999999999999999642 2246666
Q ss_pred eecc
Q 021177 185 EYDS 188 (316)
Q Consensus 185 ~~~~ 188 (316)
.+..
T Consensus 90 ~~~~ 93 (115)
T 3beg_B 90 VDGP 93 (115)
T ss_dssp ECC-
T ss_pred cCCC
Confidence 6544
No 146
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=1e-18 Score=126.34 Aligned_cols=77 Identities=30% Similarity=0.592 Sum_probs=69.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
++|||+|||+++|+++|+++|++||+|..+.+.. ++.++|||||+|.+.+ |.+|+..|||..++|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5899999999999999999999999999999964 4788999999999999 99999999999999999999998865
Q ss_pred C
Q 021177 84 R 84 (316)
Q Consensus 84 ~ 84 (316)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 147
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=135.48 Aligned_cols=82 Identities=24% Similarity=0.419 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCce
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~--------i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~ 74 (316)
..++++|||+|||+++|+++|+++|+.||.|.. +.+..++.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 468899999999999999999999999999876 555667899999999999999999999999999999999
Q ss_pred EEEEEcccCC
Q 021177 75 LRVELAHGGR 84 (316)
Q Consensus 75 l~v~~a~~~~ 84 (316)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998654
No 148
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.1e-18 Score=128.76 Aligned_cols=80 Identities=14% Similarity=0.124 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCe-eEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPI-VDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V-~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||+++|+++|+++|+.||.| ..|.|+. ++.++|||||+|.+.++|++|+.. ||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3578999999999999999999999999999 7888854 678899999999999999999996 99999999999999
Q ss_pred cccC
Q 021177 80 AHGG 83 (316)
Q Consensus 80 a~~~ 83 (316)
+...
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8754
No 149
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.74 E-value=3.9e-18 Score=122.71 Aligned_cols=78 Identities=31% Similarity=0.405 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
++..++|||+|||+++|+++|+++|++| +|..+.+. .++|||||+|.++++|++|++.|||..+.|+.|.|+++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4678999999999999999999999999 99999985 5689999999999999999999999999999999999875
Q ss_pred CC
Q 021177 83 GR 84 (316)
Q Consensus 83 ~~ 84 (316)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 150
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=6.4e-18 Score=136.27 Aligned_cols=82 Identities=23% Similarity=0.409 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||+++|+++|.++|++||.|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4567899999999999999999999999999999953 6778999999999999999999999999999999999999
Q ss_pred ccCCC
Q 021177 81 HGGRR 85 (316)
Q Consensus 81 ~~~~~ 85 (316)
.....
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 86543
No 151
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=126.31 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
+.++|||+|||+++|+++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|++|+.. +|..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 358999999999999999999999999999999964 478899999999999999999996 9999999999999988
Q ss_pred cCCC
Q 021177 82 GGRR 85 (316)
Q Consensus 82 ~~~~ 85 (316)
....
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6543
No 152
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.2e-18 Score=126.80 Aligned_cols=79 Identities=19% Similarity=0.325 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCccc--------CCc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF--------DGY 73 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~--------~g~ 73 (316)
.+.++|||+|||+++|+++|+++|+.||.|..+.|+. ++.++|||||+|.+.++|++|+..|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 5778999999999999999999999999999999954 577889999999999999999999999999 578
Q ss_pred eEEEEEccc
Q 021177 74 RLRVELAHG 82 (316)
Q Consensus 74 ~l~v~~a~~ 82 (316)
+|.|.|+.+
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 899999874
No 153
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=3.8e-18 Score=118.87 Aligned_cols=72 Identities=19% Similarity=0.461 Sum_probs=67.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
+|||+|||+++|+++|+++|++||+|..+.++. ++.++|||||+|.++++|++|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999954 47889999999999999999999 6999999999999875
No 154
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-18 Score=128.91 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEe--ccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i--~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
.+.++|||+|||+++|+++|+++|+.||.|....+ ..++.++|||||+|.+.++|++|++ |||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 47889999999999999999999999998887222 2357889999999999999999999 99999999999999988
Q ss_pred cCC
Q 021177 82 GGR 84 (316)
Q Consensus 82 ~~~ 84 (316)
...
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 155
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.9e-18 Score=124.79 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
..+.++|||+|||+++|+++|+++|++||.| .|.|+. +++++|||||+|.++++|++|++ +|+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3577899999999999999999999999955 888853 67889999999999999999996 8999999999999987
Q ss_pred ccCC
Q 021177 81 HGGR 84 (316)
Q Consensus 81 ~~~~ 84 (316)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7544
No 156
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.4e-17 Score=119.93 Aligned_cols=76 Identities=26% Similarity=0.482 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
.+.++|||+|| ++|+++|+++|++||+|..|.|. .++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 57789999996 99999999999999999999995 56899999999999999999999999999999999998865
Q ss_pred C
Q 021177 84 R 84 (316)
Q Consensus 84 ~ 84 (316)
.
T Consensus 88 ~ 88 (97)
T 1x5p_A 88 P 88 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 157
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.73 E-value=9.9e-18 Score=133.00 Aligned_cols=78 Identities=45% Similarity=0.735 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
.+.++|||+|||+++|+++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.+.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 46789999999999999999999999999999999765 6899999999999999999999999999999999998764
No 158
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=120.16 Aligned_cols=78 Identities=21% Similarity=0.424 Sum_probs=68.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~-~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
.+..++|||+|||+++|+++|+++|++||.|..|.+.. ++ + ||||+|.+.++|++|+. |||..|+|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g--~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKG--V-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSC--C-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCC--c-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 35678999999999999999999999999999983322 23 2 99999999999999999 99999999999999876
Q ss_pred cCC
Q 021177 82 GGR 84 (316)
Q Consensus 82 ~~~ 84 (316)
...
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 544
No 159
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=9.6e-17 Score=119.96 Aligned_cols=83 Identities=54% Similarity=0.963 Sum_probs=72.8
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceeccc-ccceEE
Q 021177 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA-FSRSYV 181 (316)
Q Consensus 103 ~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~-~~~~~i 181 (316)
+++.....+|||+|||+.+++++|+++|.+||.|..+.+..+ +||||+|.+.++|++|++.||+..+.|+ .....|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 344556789999999999999999999999999999999987 6999999999999999999999999982 223478
Q ss_pred EEEeecc
Q 021177 182 RVREYDS 188 (316)
Q Consensus 182 ~v~~~~~ 188 (316)
.|..+..
T Consensus 86 ~V~~a~~ 92 (108)
T 1x4c_A 86 RVKVDGP 92 (108)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 8888765
No 160
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=5.6e-18 Score=128.76 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEE
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~ 78 (316)
.+.++|||+|||+++|+++|+++|+.||. |..|.|+. +++++|||||+|.++++|++|++ |||..|.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 56789999999999999999999999999 89999854 47889999999999999999999 99999999999999
Q ss_pred Eccc
Q 021177 79 LAHG 82 (316)
Q Consensus 79 ~a~~ 82 (316)
++..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9864
No 161
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=117.72 Aligned_cols=74 Identities=27% Similarity=0.358 Sum_probs=67.4
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHhhcC-CCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEE
Q 021177 4 RSSRT-LYVGNLPGDTRMRE----VEDLFYKY-GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (316)
Q Consensus 4 ~~~~~-l~V~nLp~~~t~~~----L~~~F~~~-G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v 77 (316)
.|+.| |||+|||..+++++ |.++|++| |+|.+| ++ |+|||+|.+.++|.+|++.|||..+.|++|.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 57788 99999999999988 55899999 599998 33 99999999999999999999999999999999
Q ss_pred EEcccCC
Q 021177 78 ELAHGGR 84 (316)
Q Consensus 78 ~~a~~~~ 84 (316)
.+++...
T Consensus 79 ~~A~~~s 85 (96)
T 2diu_A 79 SFTPKNR 85 (96)
T ss_dssp ESSCCSC
T ss_pred EecCCCc
Confidence 9998655
No 162
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=1.4e-17 Score=126.05 Aligned_cols=75 Identities=24% Similarity=0.346 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCce-----EEEE
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR-----LRVE 78 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~-----l~v~ 78 (316)
...++|||+|||+++|+++|+++|++||+|..|.|+.+ |||||+|.+.++|++|++.|||..|+|+. |.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45689999999999999999999999999999999754 99999999999999999999999999998 6776
Q ss_pred Eccc
Q 021177 79 LAHG 82 (316)
Q Consensus 79 ~a~~ 82 (316)
.+..
T Consensus 90 ~~~~ 93 (115)
T 3beg_B 90 VDGP 93 (115)
T ss_dssp ECC-
T ss_pred cCCC
Confidence 6554
No 163
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=9.2e-18 Score=130.27 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEE
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~ 78 (316)
.+.++|||+|||+++|+++|+++|++||. |..|.|+. .++++|||||+|.++++|++|++ |||..|+|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 46789999999999999999999999999 88898854 47889999999999999999999 99999999999999
Q ss_pred Eccc
Q 021177 79 LAHG 82 (316)
Q Consensus 79 ~a~~ 82 (316)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 9764
No 164
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-17 Score=127.85 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEe--ccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD-IDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~-i~i--~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||+++|+++|+++|+.||.|.. +.+ ..++.++|||||+|.+.++|++|+. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 46689999999999999999999999999976 333 3478889999999999999999999 9999999999999998
Q ss_pred cc
Q 021177 81 HG 82 (316)
Q Consensus 81 ~~ 82 (316)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 165
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.71 E-value=2.6e-17 Score=134.01 Aligned_cols=81 Identities=23% Similarity=0.368 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
.++++|||+|||+.+|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|+++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4678999999999999999999999999999999965 57889999999999999999999999999999999999987
Q ss_pred cCC
Q 021177 82 GGR 84 (316)
Q Consensus 82 ~~~ 84 (316)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 643
No 166
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=119.59 Aligned_cols=79 Identities=15% Similarity=0.372 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEE-eccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDID-LKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~-i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
...++|||+|||+++|+++|+++|++||.|..+. ++.+. ..+.|||+|.+.++|++|+..|||..+.|+.|.|.++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3578999999999999999999999999999994 65432 245599999999999999999999999999999999886
Q ss_pred C
Q 021177 83 G 83 (316)
Q Consensus 83 ~ 83 (316)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 167
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=4.6e-17 Score=129.06 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=69.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCC--ceEEEEEcccCC
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGGR 84 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g--~~l~v~~a~~~~ 84 (316)
.+|||+||++.+|+++|+++|++||+|++|.|.. ..++|||||+|.+.++|++|++.|||..|.| +.|.|+|++...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4578999999999999999999999999999853 3357899999999999999999999999965 999999998764
No 168
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=2.2e-17 Score=139.93 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G--~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..++|||+|||+++|+++|+++|++|| +|+.|.|+. +++++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999954 678899999999999999999999999999999999999
Q ss_pred ccc
Q 021177 80 AHG 82 (316)
Q Consensus 80 a~~ 82 (316)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 874
No 169
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=124.90 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v 77 (316)
..+.++|||+|||+++|+++|+++|+.||. |..|.|.. .+.++|||||+|.+.++|++|+. |||..++|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 457889999999999999999999999998 89999954 47889999999999999999999 9999999999999
Q ss_pred EEccc
Q 021177 78 ELAHG 82 (316)
Q Consensus 78 ~~a~~ 82 (316)
.++..
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 99764
No 170
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=4.8e-17 Score=124.27 Aligned_cols=76 Identities=22% Similarity=0.323 Sum_probs=68.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcE-EEEEECCHHHHHHHHHhCCCcccCC--ceEEEEEcccCC
Q 021177 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGGR 84 (316)
Q Consensus 8 ~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~-aFVef~~~e~A~~A~~~l~g~~~~g--~~l~v~~a~~~~ 84 (316)
.|||+||++.+|+++|+++|++||+|.+|.|.. +.+|| |||+|.+.++|++|++.|||..|.| +.|.|+|++...
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~--~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 456999999999999999999999999999864 23688 9999999999999999999999988 899999998765
Q ss_pred C
Q 021177 85 R 85 (316)
Q Consensus 85 ~ 85 (316)
.
T Consensus 108 l 108 (130)
T 3zzy_A 108 L 108 (130)
T ss_dssp C
T ss_pred e
Confidence 3
No 171
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.7e-17 Score=121.00 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=69.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
..+|||+|||+++|+++|+++|+.| .|..|.|+. +++++|||||+|.++++|++|+. |||..|+|+.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 899999964 47889999999999999999995 999999999999988764
No 172
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.70 E-value=3.4e-17 Score=117.38 Aligned_cols=74 Identities=31% Similarity=0.587 Sum_probs=68.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCccc
Q 021177 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKY----G-------PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (316)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~ 70 (316)
++++.++|||+|||+++|+++|+++|++| | .|.++.+..+ +|||||+|.++++|++|+ .|||..+
T Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 2 PLGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp CSGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45788999999999999999999999999 8 9999998743 899999999999999999 8999999
Q ss_pred CCceEEEEE
Q 021177 71 DGYRLRVEL 79 (316)
Q Consensus 71 ~g~~l~v~~ 79 (316)
.|+.|.|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999874
No 173
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.7e-17 Score=117.54 Aligned_cols=79 Identities=24% Similarity=0.443 Sum_probs=67.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
++.++++|||+|||+++|+++|+++|++||+|..+.|+.+ ++|||||+|.+.++|++|.. .+..+.|+.|.|.++.
T Consensus 1 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 1 GSSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 3568899999999999999999999999999999999754 68999999999999986543 2455689999999987
Q ss_pred cCC
Q 021177 82 GGR 84 (316)
Q Consensus 82 ~~~ 84 (316)
...
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 174
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=7.1e-17 Score=116.21 Aligned_cols=76 Identities=24% Similarity=0.462 Sum_probs=62.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcc--cCCceEEEEEc
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN--FDGYRLRVELA 80 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~--~~g~~l~v~~a 80 (316)
..+..+|||+|||+++|+++|+++|++||+|.++.|+.+ ++|||||+|.++++|++ |+|.. +.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 357899999999999999999999999999999999763 79999999999999984 34444 56999999998
Q ss_pred ccCC
Q 021177 81 HGGR 84 (316)
Q Consensus 81 ~~~~ 84 (316)
.+..
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 7543
No 175
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=127.52 Aligned_cols=79 Identities=22% Similarity=0.230 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCe----eEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPI----VDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V----~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~ 76 (316)
..+..+|||+|||+++|+++|+++|++||.| ..|.|+. +++++|||||+|.++++|++|++ +|+..|.|+.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALR-KHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHT-TTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeeCCeEEE
Confidence 3567899999999999999999999999986 5787753 68889999999999999999999 499999999999
Q ss_pred EEEccc
Q 021177 77 VELAHG 82 (316)
Q Consensus 77 v~~a~~ 82 (316)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 176
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=1.8e-17 Score=122.62 Aligned_cols=79 Identities=22% Similarity=0.447 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
.++++|||+|||+++|+++|+++|+.||.|..+.|+. ++.++|||||+|.+.++|++|+. +|..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4578999999999999999999999999999999954 57788999999999999999999 9999999999999987
Q ss_pred cCC
Q 021177 82 GGR 84 (316)
Q Consensus 82 ~~~ 84 (316)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 644
No 177
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=1.1e-16 Score=121.67 Aligned_cols=77 Identities=21% Similarity=0.218 Sum_probs=68.6
Q ss_pred CCCe--EEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcE-EEEEECCHHHHHHHHHhCCCcccCC--ceEEEEE
Q 021177 5 SSRT--LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (316)
Q Consensus 5 ~~~~--l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~-aFVef~~~e~A~~A~~~l~g~~~~g--~~l~v~~ 79 (316)
|+++ |||+||++.+|+++|+++|++||+|.+|.|... .|| |||+|.+.++|.+|++.|||..|.| +.|.|++
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 4555 569999999999999999999999999999642 486 9999999999999999999999987 5899999
Q ss_pred cccCC
Q 021177 80 AHGGR 84 (316)
Q Consensus 80 a~~~~ 84 (316)
++...
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98654
No 178
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=1.8e-17 Score=129.00 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
.+.++|||+|||+++|+++|+++|++|| |..|.|+. +++++|||||+|.++++|++|+ .+|+..|.|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4678999999999999999999999999 67998854 4788999999999999999999 599999999999999987
Q ss_pred cCC
Q 021177 82 GGR 84 (316)
Q Consensus 82 ~~~ 84 (316)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 644
No 179
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2e-18 Score=130.88 Aligned_cols=82 Identities=28% Similarity=0.407 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccC
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~--------i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~ 71 (316)
..+.++|||+|||+++|+++|+++|++||.|.. +.|+. ++.++|||||+|.+.++|++|+..|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 357899999999999999999999999999998 77753 5788999999999999999999999999999
Q ss_pred CceEEEEEcccCC
Q 021177 72 GYRLRVELAHGGR 84 (316)
Q Consensus 72 g~~l~v~~a~~~~ 84 (316)
|+.|.|.++....
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999988654
No 180
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=9.3e-17 Score=122.69 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCee--EEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIV--DIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~--~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
.+.++|||+|||+++|+++|+++|++| .|. .|.|+. +++++|||||+|.++++|++|++ +++..|.|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 457899999999999999999999999 677 888854 47889999999999999999998 688999999999988
Q ss_pred ccc
Q 021177 80 AHG 82 (316)
Q Consensus 80 a~~ 82 (316)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 754
No 181
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.9e-16 Score=118.55 Aligned_cols=75 Identities=32% Similarity=0.500 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---C---CCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---P---PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~---~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~ 76 (316)
..++++|||+|||+++|+++|+++|++||+|. +.++. + +.++|||||+|.++++|++|++.|++ ++|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEE
Confidence 46789999999999999999999999999999 66643 2 68899999999999999999998843 6666666
Q ss_pred EEEc
Q 021177 77 VELA 80 (316)
Q Consensus 77 v~~a 80 (316)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6543
No 182
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.67 E-value=1.5e-16 Score=121.19 Aligned_cols=76 Identities=26% Similarity=0.482 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
.++++|||+|| ++|+++|+++|++||+|..|.|. .++|||||+|.+.++|++|+..|||..+.|+.|.|.++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 57899999996 79999999999999999999996 56899999999999999999999999999999999998865
Q ss_pred C
Q 021177 84 R 84 (316)
Q Consensus 84 ~ 84 (316)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 183
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=2.3e-16 Score=116.94 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHhhcCCCeeEEEeccC----CCCCcEEEEEECCHHHHHHHHHhCCCcccCCc
Q 021177 3 SRSSRTLYVGNLPG-----DTRMREVEDLFYKYGPIVDIDLKIP----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (316)
Q Consensus 3 ~~~~~~l~V~nLp~-----~~t~~~L~~~F~~~G~V~~i~i~~~----~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~ 73 (316)
..|+++|+|.||.. +-++++|+++|++||+|.++.|+.+ ++++|||||+|.++++|.+|++.|||..|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 57999999999963 2478999999999999999999643 57899999999999999999999999999999
Q ss_pred eEEEEEccc
Q 021177 74 RLRVELAHG 82 (316)
Q Consensus 74 ~l~v~~a~~ 82 (316)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 184
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.67 E-value=5e-16 Score=125.09 Aligned_cols=135 Identities=15% Similarity=0.105 Sum_probs=72.0
Q ss_pred EEECCHHHHHHHHHhCCCcccC--CceEEEEEcccCCCCCCCCCCCC-CCCCCCCCCCCCCCCceEEEeCCCCCCCHHHH
Q 021177 50 LEFEDYRDAEDAIRGRDGYNFD--GYRLRVELAHGGRRHSSSMDRYS-SYSSGGSRGVSRRSDYRVLVTGLPSSASWQDL 126 (316)
Q Consensus 50 Vef~~~e~A~~A~~~l~g~~~~--g~~l~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 126 (316)
.+|.+.++|..|+..|++.... |+.+.+.++....... ...... ........+......++|||+|||+.+++++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHS-YERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEI 89 (165)
T ss_dssp --------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccC-ccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 7899999999999999986664 6566555532211000 000000 00001112223456789999999999999999
Q ss_pred HHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeeccC
Q 021177 127 KDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (316)
Q Consensus 127 ~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (316)
.++|.+||.|..+.+..+..+ +||||+|.+.++|..|+..|||..+.| ..|.|..+...
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~~~ 152 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QTIQVDWCFVK 152 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEESEEC
T ss_pred HHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC----EEEEEEEecCC
Confidence 999999999999999987543 699999999999999999999999999 57888876654
No 185
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.9e-16 Score=126.04 Aligned_cols=79 Identities=23% Similarity=0.428 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEec---cCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~---~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..+.++|||+|||+.+|+++|+++|++||.|..+.+. .++.++|||||+|.+.++|.+|+..|||..++|+.|.|.|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 3567899999999999999999999999999999995 3578899999999999999999999999999999999999
Q ss_pred cc
Q 021177 80 AH 81 (316)
Q Consensus 80 a~ 81 (316)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 85
No 186
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=4.5e-16 Score=130.60 Aligned_cols=81 Identities=25% Similarity=0.454 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||.++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4568999999999999999999999999999999954 5778999999999999999999999999999999999998
Q ss_pred ccCC
Q 021177 81 HGGR 84 (316)
Q Consensus 81 ~~~~ 84 (316)
....
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 187
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.1e-16 Score=118.70 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=68.5
Q ss_pred CCeEEEcCC----CCCCCHHHHHHHhhcCCCeeEEEec---cCCCCCcEEEEEECC----HHH----HHHHHH--hCCCc
Q 021177 6 SRTLYVGNL----PGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFED----YRD----AEDAIR--GRDGY 68 (316)
Q Consensus 6 ~~~l~V~nL----p~~~t~~~L~~~F~~~G~V~~i~i~---~~~~~~g~aFVef~~----~e~----A~~A~~--~l~g~ 68 (316)
..+|||+|| |+.+++++|+++|+.||+|..+.+. .||.++|||||+|.+ +++ |.+|+. .|||.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 378999999 9999999999999999999999994 478999999999996 434 788888 78999
Q ss_pred ccCCceEEEEEcccC
Q 021177 69 NFDGYRLRVELAHGG 83 (316)
Q Consensus 69 ~~~g~~l~v~~a~~~ 83 (316)
.|+|+.|.|.+....
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999986643
No 188
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.65 E-value=3e-16 Score=131.75 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc-CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccC
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~-~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (316)
...+|||+|||+++|+++|+++|+.||.|..+.|+. .+.++|||||+|.+.++|++|++.|||..|+|+.|.|.++...
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 457899999999999999999999999999999964 4557899999999999999999999999999999999998753
No 189
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.63 E-value=4e-16 Score=121.28 Aligned_cols=120 Identities=15% Similarity=0.066 Sum_probs=72.6
Q ss_pred CcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHH
Q 021177 45 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQ 124 (316)
Q Consensus 45 ~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 124 (316)
..++|++|.+...|..|+..++|....|..- +.+ +..++......+|||+|||..++++
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~--------------------~~~~~~~~~~~~l~V~nLp~~~te~ 62 (135)
T 2lea_A 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSY--------------------GRPPPDVEGMTSLKVDNLTYRTSPD 62 (135)
T ss_dssp --------------------------------CCS--------------------CCSCSSGGGCCCEEEECCCSSCHHH
T ss_pred cccccccccCCCchhhhhhhccCCCCCCCCC-CCc--------------------CCCCCCCCCCCEEEEeCCCCCCCHH
Confidence 3478999999999999999998865544431 000 1112334456799999999999999
Q ss_pred HHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeeccC
Q 021177 125 DLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (316)
Q Consensus 125 ~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (316)
+|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|+..||+..+.| ..|.|..++..
T Consensus 63 ~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g----~~l~V~~a~~~ 127 (135)
T 2lea_A 63 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARYG 127 (135)
T ss_dssp HHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS----SCCEEEECCCC
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCCC
Confidence 9999999999999999987643 3699999999999999999999999999 47888877654
No 190
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=3.9e-16 Score=125.62 Aligned_cols=78 Identities=19% Similarity=0.492 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
+.++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|++ ++|..++|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 467899999999999999999999999999999954 57889999999999999999998 99999999999999987
Q ss_pred cC
Q 021177 82 GG 83 (316)
Q Consensus 82 ~~ 83 (316)
+.
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 191
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.63 E-value=5.6e-16 Score=125.29 Aligned_cols=76 Identities=29% Similarity=0.541 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
+.++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..++|+.|.|.+|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 468999999999999999999999999999999943 5778999999999999999999999999999999999987
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.63 E-value=5.4e-16 Score=125.88 Aligned_cols=77 Identities=25% Similarity=0.366 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
.+.++|||+|||+++|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..++|+.|.|.|+.+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 356899999999999999999999999999988 66788999999999999999999999999999999999999875
No 193
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.63 E-value=8.9e-16 Score=127.00 Aligned_cols=81 Identities=30% Similarity=0.524 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a 80 (316)
.+.++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..++|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5679999999999999999999999999999999953 6778999999999999999999999999999999999998
Q ss_pred ccCC
Q 021177 81 HGGR 84 (316)
Q Consensus 81 ~~~~ 84 (316)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8643
No 194
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.63 E-value=3.3e-15 Score=109.62 Aligned_cols=76 Identities=21% Similarity=0.355 Sum_probs=69.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEEEEE
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~ 184 (316)
+++|||+|||..+++++|+++|.+||.|..+.+..++.+ |||||+|.+.++|++|++.|||..+.| +.|.|.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g----r~l~V~ 94 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS----KTIKVS 94 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC----EEEEEE
Confidence 568999999999999999999999999999999987653 699999999999999999999999999 588888
Q ss_pred eecc
Q 021177 185 EYDS 188 (316)
Q Consensus 185 ~~~~ 188 (316)
.+++
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 7643
No 195
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.62 E-value=1.3e-15 Score=113.81 Aligned_cols=79 Identities=33% Similarity=0.519 Sum_probs=71.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcC-CeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
....+|||+|||+.+++++|+++|.+|| .|..+.+......|||||+|.+.++|++|++.|||..+.| +.|.|+.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G----r~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG----SVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT----EEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEE
Confidence 3467999999999999999999999999 9999999766667899999999999999999999999999 5888888
Q ss_pred eccC
Q 021177 186 YDSR 189 (316)
Q Consensus 186 ~~~~ 189 (316)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 7654
No 196
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.6e-15 Score=112.90 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCC-----------HHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccC
Q 021177 3 SRSSRTLYVGNLPGDTR-----------MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t-----------~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~ 71 (316)
..++++|+|.||....+ +++|+++|++||+|..|.| .+..++|||||+|.+.++|++|+..|||..|+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 35789999999954432 6899999999999999977 44568999999999999999999999999999
Q ss_pred CceEEEEEcccCC
Q 021177 72 GYRLRVELAHGGR 84 (316)
Q Consensus 72 g~~l~v~~a~~~~ 84 (316)
|+.|.|.++.+..
T Consensus 91 gr~l~v~~a~~~~ 103 (112)
T 2dit_A 91 GRQITAQAWDGTT 103 (112)
T ss_dssp TEECEEEECCSCC
T ss_pred CcEEEEEEeCCCC
Confidence 9999999987643
No 197
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.61 E-value=7.5e-16 Score=130.14 Aligned_cols=78 Identities=24% Similarity=0.347 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCccc----
Q 021177 4 RSSRTLYVGNLPGDT---------RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---- 70 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~---------t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~---- 70 (316)
.++++||||||+..+ |+++|+++|++||+|++|.|+. ++|||||+|.+.++|+.|++.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 568999999999998 7999999999999999999974 489999999999999999999999999
Q ss_pred --------CCceEEEEEcccCC
Q 021177 71 --------DGYRLRVELAHGGR 84 (316)
Q Consensus 71 --------~g~~l~v~~a~~~~ 84 (316)
.|+.|.|.||....
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp STTGGGGGGSCCCEEEECC---
T ss_pred cccccccCCCCEEEEEEccCCC
Confidence 89999999998543
No 198
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.61 E-value=1.8e-15 Score=121.79 Aligned_cols=77 Identities=32% Similarity=0.526 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCC--ceEEEE
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVE 78 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g--~~l~v~ 78 (316)
.+.++|||+|||..+|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999954 56778999999999999999999999999988 999998
Q ss_pred Ec
Q 021177 79 LA 80 (316)
Q Consensus 79 ~a 80 (316)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 199
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.61 E-value=2e-15 Score=124.73 Aligned_cols=80 Identities=23% Similarity=0.436 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
+.++|||+|||+++|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+.. +|..|+|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 568999999999999999999999999999999954 578899999999999999999984 8999999999999988
Q ss_pred cCCC
Q 021177 82 GGRR 85 (316)
Q Consensus 82 ~~~~ 85 (316)
....
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 7653
No 200
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=9.3e-15 Score=110.49 Aligned_cols=80 Identities=14% Similarity=0.241 Sum_probs=71.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC---CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
....+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.|||..+.| ..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g----~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG----KAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS----SBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 3467999999999999999999999999999999998763 3799999999999999999999999999 47888
Q ss_pred EeeccCC
Q 021177 184 REYDSRR 190 (316)
Q Consensus 184 ~~~~~~r 190 (316)
..+....
T Consensus 81 ~~a~~~~ 87 (116)
T 2fy1_A 81 EQAKKPS 87 (116)
T ss_dssp EECCCSS
T ss_pred EECCCCC
Confidence 8876543
No 201
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=3.5e-15 Score=114.57 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=71.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
.....+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.||+..+.|. .|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l 94 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ----PI 94 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS----BC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe----EE
Confidence 34578999999999999999999999999999999987753 36999999999999999999999999994 77
Q ss_pred EEEeeccCC
Q 021177 182 RVREYDSRR 190 (316)
Q Consensus 182 ~v~~~~~~r 190 (316)
.|..+....
T Consensus 95 ~v~~a~~~~ 103 (126)
T 3ex7_B 95 SVDWCFVRG 103 (126)
T ss_dssp EEEESEESS
T ss_pred EEEEecCCC
Confidence 777766543
No 202
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.60 E-value=1.6e-15 Score=122.86 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccC---CceEEEEE
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLRVEL 79 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~---g~~l~v~~ 79 (316)
+.++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|++.|||..+. |++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 568999999999999999999999999999999954 5678999999999999999999999998776 49999998
Q ss_pred cc
Q 021177 80 AH 81 (316)
Q Consensus 80 a~ 81 (316)
|.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 203
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.60 E-value=2.5e-15 Score=111.35 Aligned_cols=81 Identities=23% Similarity=0.397 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCC--CCCCC--------HHHHHHHhhcCCCeeEEEeccC-----CCCCcEEEEEECCHHHHHHHHHhCC
Q 021177 2 SSRSSRTLYVGNL--PGDTR--------MREVEDLFYKYGPIVDIDLKIP-----PRPPGYAFLEFEDYRDAEDAIRGRD 66 (316)
Q Consensus 2 ~~~~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~V~~i~i~~~-----~~~~g~aFVef~~~e~A~~A~~~l~ 66 (316)
++.|+++|.+.|+ |..+. +++|+++|++||+|.+|.|+.+ +.++|||||+|.++++|.+|++.||
T Consensus 1 ~g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 1 GGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp CCSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC
Confidence 3579999999999 44443 3689999999999999999653 3578999999999999999999999
Q ss_pred CcccCCceEEEEEccc
Q 021177 67 GYNFDGYRLRVELAHG 82 (316)
Q Consensus 67 g~~~~g~~l~v~~a~~ 82 (316)
|..|+|+.|.|.++..
T Consensus 81 G~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 81 GRKFANRVVVTKYCDP 96 (105)
T ss_dssp TCEETTEECEEEEECH
T ss_pred CCEeCCCEEEEEEeCH
Confidence 9999999999999754
No 204
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=2.7e-15 Score=123.81 Aligned_cols=76 Identities=16% Similarity=0.412 Sum_probs=69.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEccc
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 82 (316)
.++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.++++|++|+..+ +..++|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 47999999999999999999999999999999964 5778999999999999999999855 5699999999998764
No 205
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.59 E-value=3.2e-15 Score=119.97 Aligned_cols=76 Identities=32% Similarity=0.588 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCce--EEEEE
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR--LRVEL 79 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~--l~v~~ 79 (316)
+.++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|++.|||..+.|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 568899999999999999999999999999999953 5678999999999999999999999999999965 88877
Q ss_pred c
Q 021177 80 A 80 (316)
Q Consensus 80 a 80 (316)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 206
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.3e-14 Score=103.96 Aligned_cols=82 Identities=10% Similarity=0.080 Sum_probs=73.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC--eEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~--~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
......+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|++|++.||+..+.| ..|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG----KEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC----CeEE
Confidence 3456789999999999999999999999999999999987543 799999999999999999999999998 5899
Q ss_pred EEeeccCC
Q 021177 183 VREYDSRR 190 (316)
Q Consensus 183 v~~~~~~r 190 (316)
|..+....
T Consensus 87 V~~a~~~~ 94 (103)
T 2cqi_A 87 VNWATTPS 94 (103)
T ss_dssp EEECCCTT
T ss_pred EEECCCCc
Confidence 98877654
No 207
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.58 E-value=1.6e-14 Score=108.98 Aligned_cols=77 Identities=22% Similarity=0.327 Sum_probs=69.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC--eEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEee
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~--~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
..+|||+|||+.+++++|+++|.+||.|..+.+..+..+ |||||+|.+.++|++|++.||+..+.| +.|.|..+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g----~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEEC
Confidence 458999999999999999999999999999999987654 699999999999999999999999999 57888776
Q ss_pred ccC
Q 021177 187 DSR 189 (316)
Q Consensus 187 ~~~ 189 (316)
..+
T Consensus 81 ~~~ 83 (115)
T 4f25_A 81 KSR 83 (115)
T ss_dssp SCC
T ss_pred CCc
Confidence 543
No 208
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.57 E-value=8e-15 Score=128.24 Aligned_cols=76 Identities=21% Similarity=0.375 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccC-CceEEEEEcc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAH 81 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~-g~~l~v~~a~ 81 (316)
.++++|||+|||..+|+++|+++|+.||.|..|.+..+. +|||||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 367899999999999999999999999999999997433 589999999999999999999999999 9999999986
No 209
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.8e-14 Score=106.46 Aligned_cols=84 Identities=19% Similarity=0.152 Sum_probs=73.6
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccc
Q 021177 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (316)
Q Consensus 103 ~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 178 (316)
.+......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.||+..+.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---- 82 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG---- 82 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT----
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC----
Confidence 34455678999999999999999999999999999999988754 3699999999999999999999999999
Q ss_pred eEEEEEeeccCC
Q 021177 179 SYVRVREYDSRR 190 (316)
Q Consensus 179 ~~i~v~~~~~~r 190 (316)
..|.|..+...+
T Consensus 83 ~~l~V~~a~~~~ 94 (103)
T 2dnm_A 83 RELRVQVARYGR 94 (103)
T ss_dssp BCCEEEECSSCC
T ss_pred cEEEEEECCcCC
Confidence 478888876543
No 210
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.5e-14 Score=105.48 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=73.1
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC-CeEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 104 ~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
+......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.||+..+.| ..|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG----YRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 3445678999999999999999999999999999999977654 4799999999999999999999999998 5888
Q ss_pred EEeeccCC
Q 021177 183 VREYDSRR 190 (316)
Q Consensus 183 v~~~~~~r 190 (316)
|..+...+
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 88876653
No 211
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8.1e-14 Score=102.95 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=73.2
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC--CeEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|+..||+..+.| ..|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKIE 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 345678999999999999999999999999999999998754 4799999999999999999999999999 5888
Q ss_pred EEeeccCC
Q 021177 183 VREYDSRR 190 (316)
Q Consensus 183 v~~~~~~r 190 (316)
|..+....
T Consensus 87 v~~a~~~~ 94 (103)
T 2cq3_A 87 VNNATARV 94 (103)
T ss_dssp EEECCSSC
T ss_pred EEEcccCC
Confidence 88876653
No 212
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.57 E-value=2.6e-14 Score=106.88 Aligned_cols=78 Identities=17% Similarity=0.084 Sum_probs=70.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
+..+|||+|||+.+++++|+++|.+||.|..+.++.++.+ |||||+|.+.++|++|++.|||..+.| +.|.|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g----r~i~V 80 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG----NIIHA 80 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC----eEEEE
Confidence 4579999999999999999999999999999999988653 699999999999999999999999999 57888
Q ss_pred EeeccC
Q 021177 184 REYDSR 189 (316)
Q Consensus 184 ~~~~~~ 189 (316)
..+...
T Consensus 81 ~~a~~~ 86 (110)
T 3s8s_A 81 QLDIKG 86 (110)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 876543
No 213
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=5e-14 Score=103.26 Aligned_cols=81 Identities=16% Similarity=0.131 Sum_probs=72.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
....+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.||+..+.| ..+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 81 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG----RMLH 81 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS----CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 4567999999999999999999999999999999988763 3699999999999999999999999998 5888
Q ss_pred EEeeccCCC
Q 021177 183 VREYDSRRS 191 (316)
Q Consensus 183 v~~~~~~r~ 191 (316)
|..+.....
T Consensus 82 V~~a~~~~~ 90 (99)
T 1whw_A 82 VLPSTIKKE 90 (99)
T ss_dssp EEECCCCST
T ss_pred EEEcCCCcc
Confidence 888776643
No 214
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.56 E-value=2.5e-14 Score=100.55 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=67.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEee
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
....|+|+||++.+++++|+++|.+||+|..+++.. ..|||||+|.+.++|.+|++.||+..+.| +.|+|..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g----r~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLAN----TTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETT----EEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECC----cEEEEEEC
Confidence 356899999999999999999999999999999876 45799999999999999999999999999 58888765
No 215
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-13 Score=103.77 Aligned_cols=81 Identities=21% Similarity=0.315 Sum_probs=72.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC---eEEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
......+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|++|++.||+..+.| ..|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 86 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD----RPM 86 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC----CEE
Confidence 3455789999999999999999999999999999999987653 699999999999999999999999998 578
Q ss_pred EEEeeccC
Q 021177 182 RVREYDSR 189 (316)
Q Consensus 182 ~v~~~~~~ 189 (316)
.|..+...
T Consensus 87 ~v~~a~~~ 94 (114)
T 2do0_A 87 HVKMDERA 94 (114)
T ss_dssp EEEECSCC
T ss_pred EEEEcccC
Confidence 88876543
No 216
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.2e-14 Score=103.97 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=73.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~ 180 (316)
......+|||+|||..+++++|+++|.+||.|..+.+..++.. +||||+|.+.++|++|++.||+..+.| ..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 86 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH----LI 86 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC----cE
Confidence 3456789999999999999999999999999999999987543 699999999999999999999999999 58
Q ss_pred EEEEeeccCC
Q 021177 181 VRVREYDSRR 190 (316)
Q Consensus 181 i~v~~~~~~r 190 (316)
|.|..+....
T Consensus 87 l~v~~a~~~~ 96 (103)
T 2cq0_A 87 LNVEWAKPST 96 (103)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 8888876653
No 217
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.6e-14 Score=104.63 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=72.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~ 180 (316)
......+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|.+|++.||+..+.| ..
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 83 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG----RQ 83 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS----CC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----eE
Confidence 344578999999999999999999999999999999988753 3699999999999999999999999999 47
Q ss_pred EEEEeeccCC
Q 021177 181 VRVREYDSRR 190 (316)
Q Consensus 181 i~v~~~~~~r 190 (316)
|.|..+....
T Consensus 84 l~v~~a~~~~ 93 (102)
T 1x5s_A 84 IRVDQAGKSS 93 (102)
T ss_dssp CEEEEEECCC
T ss_pred EEEEECCCCC
Confidence 7887776543
No 218
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.3e-14 Score=104.89 Aligned_cols=81 Identities=21% Similarity=0.196 Sum_probs=72.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
..+..+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|++|++.||+..+.| ..|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 84 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTI 84 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEE
Confidence 34578999999999999999999999999999999987643 3699999999999999999999999998 589
Q ss_pred EEEeeccCC
Q 021177 182 RVREYDSRR 190 (316)
Q Consensus 182 ~v~~~~~~r 190 (316)
.|..+....
T Consensus 85 ~V~~a~~~~ 93 (102)
T 2cqb_A 85 RVNLAKPMR 93 (102)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 998876654
No 219
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4e-14 Score=104.60 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=72.2
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeec--CCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD--RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~--~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
.....++|||+|||+.+++++|+++|.+||.|..+.+..+ ...+||||+|.+.++|++|++.||+..+.| ..+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT----KPLY 86 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS----SBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC----cEEE
Confidence 3446789999999999999999999999999999999987 223699999999999999999999999998 4788
Q ss_pred EEeeccCC
Q 021177 183 VREYDSRR 190 (316)
Q Consensus 183 v~~~~~~r 190 (316)
|..+....
T Consensus 87 V~~a~~~~ 94 (103)
T 2d9p_A 87 VALAQRKE 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEEecccc
Confidence 88876653
No 220
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.56 E-value=2.2e-13 Score=102.73 Aligned_cols=82 Identities=17% Similarity=0.240 Sum_probs=73.2
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~ 180 (316)
......+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|++|++.||+..+.| ..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 86 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----RQ 86 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT----EE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----EE
Confidence 4456789999999999999999999999999999999987542 699999999999999999999999999 58
Q ss_pred EEEEeeccCC
Q 021177 181 VRVREYDSRR 190 (316)
Q Consensus 181 i~v~~~~~~r 190 (316)
|.|..+....
T Consensus 87 l~V~~a~~~~ 96 (115)
T 2dgo_A 87 IRTNWATRKP 96 (115)
T ss_dssp CEEEESSCCC
T ss_pred EEEEEccCCC
Confidence 8888876653
No 221
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.55 E-value=7.7e-15 Score=121.52 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccC-CceEEEEEcc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAH 81 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~-g~~l~v~~a~ 81 (316)
.++++|||+|||..+|+++|+++|+.|| .|..+.+..+ .+|||||+|.+.++|.+|+..|||..+. |+.|.|.|++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 3589999999999999999999999999 9999999543 3799999999999999999999999999 9999999987
Q ss_pred c
Q 021177 82 G 82 (316)
Q Consensus 82 ~ 82 (316)
+
T Consensus 196 ~ 196 (198)
T 1qm9_A 196 S 196 (198)
T ss_dssp C
T ss_pred c
Confidence 5
No 222
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=5.5e-14 Score=103.07 Aligned_cols=81 Identities=16% Similarity=0.305 Sum_probs=71.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~ 180 (316)
......+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|++|++ +|+..+.| ..
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~~ 80 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG----KK 80 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS----CB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC----eE
Confidence 345578999999999999999999999999999999988753 3699999999999999998 99999999 47
Q ss_pred EEEEeeccCC
Q 021177 181 VRVREYDSRR 190 (316)
Q Consensus 181 i~v~~~~~~r 190 (316)
+.|..+....
T Consensus 81 l~V~~a~~~~ 90 (99)
T 2dgs_A 81 VEVKRAEPRD 90 (99)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCc
Confidence 8888776553
No 223
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.2e-14 Score=102.63 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=71.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHHhhcCCeEEEEEeecCC-CeEEEEEecCHHHHHHHHHHhCCceecccccceE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~----~~f~~~G~v~~~~~~~~~~-~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~ 180 (316)
.....+|||+|||+.+++++|+ ++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.|||..+.| +.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g----r~ 81 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS----KK 81 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT----EE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC----eE
Confidence 3456799999999999999999 9999999999999997654 4799999999999999999999999999 58
Q ss_pred EEEEeeccC
Q 021177 181 VRVREYDSR 189 (316)
Q Consensus 181 i~v~~~~~~ 189 (316)
|.|..+...
T Consensus 82 l~V~~a~~~ 90 (96)
T 2dgx_A 82 ILVSLATGA 90 (96)
T ss_dssp EEEEECCCS
T ss_pred EEEEEcCCC
Confidence 999887654
No 224
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=6.1e-14 Score=100.97 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=69.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEee
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
.+..+|||+|||..+++++|+++|.+||.|..+.+. .+||||+|.+.++|++|++.||+..+.| ..+.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHG----VNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSS----CBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCC----cEEEEEEC
Confidence 457899999999999999999999999999999998 3599999999999999999999999999 47888887
Q ss_pred ccCC
Q 021177 187 DSRR 190 (316)
Q Consensus 187 ~~~r 190 (316)
....
T Consensus 78 ~~~~ 81 (90)
T 2dnq_A 78 KNKS 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6654
No 225
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.55 E-value=6.5e-15 Score=122.74 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCe--eEEEeccC-CCCCcEEEEEECCHHHHHHHHHhCCCcccCCc----eEE
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPI--VDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY----RLR 76 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V--~~i~i~~~-~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~----~l~ 76 (316)
.|+++|||+|||+++|+++|+++|++||.| ..+++..+ +..+|||||+|.+.++|.+|+..|||..|.|. ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 367899999999999999999999999999 89988653 45579999999999999999999999999876 677
Q ss_pred EEEc
Q 021177 77 VELA 80 (316)
Q Consensus 77 v~~a 80 (316)
|+++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7764
No 226
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.9e-14 Score=104.82 Aligned_cols=77 Identities=6% Similarity=0.080 Sum_probs=67.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCC--ceecccccceEEEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVRVR 184 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g--~~~~g~~~~~~i~v~ 184 (316)
.+..+|||+|||+.+++++|+++|.+||.|..+.++.+ .|||||+|++.++|+.|++.+++ ..+.| +.|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G----r~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETT----EECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEEE
Confidence 44679999999999999999999999999999999876 47999999999999999998864 78888 578777
Q ss_pred eeccC
Q 021177 185 EYDSR 189 (316)
Q Consensus 185 ~~~~~ 189 (316)
.+..+
T Consensus 88 ~A~~~ 92 (105)
T 1sjq_A 88 FSNHK 92 (105)
T ss_dssp CCSSS
T ss_pred EcCCC
Confidence 76554
No 227
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-13 Score=100.11 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=70.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~ 184 (316)
......+|||+|||..+++++|+++|.+||.|..+.+..+ ||||+|.+.++|.+|+..||+..+.| ..+.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQG----KRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETT----EEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCC----cEEEEE
Confidence 3455789999999999999999999999999999999865 99999999999999999999999998 588898
Q ss_pred eeccCC
Q 021177 185 EYDSRR 190 (316)
Q Consensus 185 ~~~~~r 190 (316)
.+....
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 876653
No 228
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=2e-14 Score=121.91 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccC-CceEEEEEcc
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAH 81 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~-g~~l~v~~a~ 81 (316)
.++++|||+|||+.+|+++|+++|++|| .|..+.+... .+|||||+|.+.++|.+|+..|||..+. |+.|.|.|++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 3579999999999999999999999999 9999999542 3799999999999999999999999999 9999999987
Q ss_pred c
Q 021177 82 G 82 (316)
Q Consensus 82 ~ 82 (316)
+
T Consensus 227 ~ 227 (229)
T 2adc_A 227 S 227 (229)
T ss_dssp S
T ss_pred C
Confidence 5
No 229
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=6.4e-14 Score=101.86 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=71.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
+..+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|++|++.||+..+.| ..|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 79 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG----RPMRV 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS----SCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC----cEEEE
Confidence 467999999999999999999999999999999998754 3699999999999999999999999999 47888
Q ss_pred EeeccCC
Q 021177 184 REYDSRR 190 (316)
Q Consensus 184 ~~~~~~r 190 (316)
..+..+.
T Consensus 80 ~~a~~~~ 86 (95)
T 2dnz_A 80 GHVTERL 86 (95)
T ss_dssp EESSCCC
T ss_pred EEccccc
Confidence 8876654
No 230
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-13 Score=101.12 Aligned_cols=81 Identities=20% Similarity=0.335 Sum_probs=72.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC---eEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
.....+|||+|||..+++++|.++|.+||.|..+.+..+..+ +||||+|.+.++|++|++.||+..+.| ..|.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 89 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE----NIIK 89 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS----CEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 345679999999999999999999999999999999987643 699999999999999999999999999 5888
Q ss_pred EEeeccCC
Q 021177 183 VREYDSRR 190 (316)
Q Consensus 183 v~~~~~~r 190 (316)
|..+....
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 88876543
No 231
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-13 Score=100.50 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=71.2
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccce
Q 021177 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (316)
Q Consensus 104 ~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~ 179 (316)
....+..+|||+|||..+++++|+++|.+||.|..+.+..++.+ +||||+|.+.++|++|++.||+..+.| .
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 85 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----R 85 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT----E
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----E
Confidence 34456789999999999999999999999999999999987553 699999999999999999999999999 5
Q ss_pred EEEEEeec
Q 021177 180 YVRVREYD 187 (316)
Q Consensus 180 ~i~v~~~~ 187 (316)
.|.|..++
T Consensus 86 ~l~v~~a~ 93 (95)
T 2cqc_A 86 RIRVSGPS 93 (95)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 78887654
No 232
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.54 E-value=1.8e-13 Score=103.14 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=72.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
.....+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|++|++.||+..+.| ..|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 97 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM----KRL 97 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 345689999999999999999999999999999999987643 699999999999999999999999999 588
Q ss_pred EEEeeccCC
Q 021177 182 RVREYDSRR 190 (316)
Q Consensus 182 ~v~~~~~~r 190 (316)
.|..+....
T Consensus 98 ~V~~a~~~~ 106 (115)
T 2cpz_A 98 KVQLKRSKN 106 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEEcCCCC
Confidence 888876553
No 233
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=1.5e-13 Score=101.55 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=71.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~ 180 (316)
+..+..+|||+|||..+++++|+++|.+|| |..+.+..+..+ +||||+|.+.++|++|+ .||+..+.| ..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~ 84 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD----RS 84 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT----EE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC----eE
Confidence 445678999999999999999999999997 999999988653 69999999999999999 999999999 58
Q ss_pred EEEEeeccCC
Q 021177 181 VRVREYDSRR 190 (316)
Q Consensus 181 i~v~~~~~~r 190 (316)
|.|..+....
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2dng_A 85 LRVDIAEGRK 94 (103)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 8888876654
No 234
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=7.9e-14 Score=102.21 Aligned_cols=84 Identities=8% Similarity=0.088 Sum_probs=73.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeE-EEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC-FSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~-~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~ 180 (316)
..+..+|||+|||..+++++|+++|.+||.|. .+.+..++.+ +||||+|.+.++|++|++.||+..+.|......
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34578999999999999999999999999999 9999987643 699999999999999999999999999754445
Q ss_pred EEEEeeccC
Q 021177 181 VRVREYDSR 189 (316)
Q Consensus 181 i~v~~~~~~ 189 (316)
+++..+...
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 888876554
No 235
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.54 E-value=1.4e-13 Score=101.99 Aligned_cols=83 Identities=22% Similarity=0.214 Sum_probs=71.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC---eEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
....+|||+|||..+++++|+++|.+||.|..+.+..++.+ +||||+|.+.++|++|++.||+..+.|.. ...|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~-~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGA-SSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTC-SSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCC-CccEEE
Confidence 45789999999999999999999999999999999987653 69999999999999999999999988710 136778
Q ss_pred EeeccCC
Q 021177 184 REYDSRR 190 (316)
Q Consensus 184 ~~~~~~r 190 (316)
..+....
T Consensus 92 ~~a~~~~ 98 (105)
T 2dnh_A 92 KFADTDK 98 (105)
T ss_dssp EESCSSC
T ss_pred EECccCc
Confidence 7776654
No 236
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.54 E-value=7.7e-14 Score=99.66 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=68.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
.+..+|||+|||..+++++|+++|.+||.|..+.+..++.+ +||||+|.+.++|++|++.||+..+.| ..+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 79 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----RQIR 79 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 34679999999999999999999999999999999987532 699999999999999999999999999 5777
Q ss_pred EEeecc
Q 021177 183 VREYDS 188 (316)
Q Consensus 183 v~~~~~ 188 (316)
+..+..
T Consensus 80 v~~a~~ 85 (87)
T 3bs9_A 80 TNWATR 85 (87)
T ss_dssp EEEEC-
T ss_pred EEecCC
Confidence 777654
No 237
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.54 E-value=1.7e-13 Score=101.23 Aligned_cols=76 Identities=9% Similarity=0.170 Sum_probs=69.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEee
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+ ||||+|.+.++|++|++.||+..+.| ..|.|..+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD----YAFIHFDERDGAVKAMEEMNGKDLEG----ENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESSHHHHHHHHHHHTTEEETT----EEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----EEEEEeCCHHHHHHHHHHHCCCccCC----CEEEEEEc
Confidence 45679999999999999999999999999999998854 99999999999999999999999998 58888887
Q ss_pred ccCC
Q 021177 187 DSRR 190 (316)
Q Consensus 187 ~~~r 190 (316)
....
T Consensus 81 ~~~~ 84 (103)
T 2dgu_A 81 KPPD 84 (103)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6653
No 238
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.53 E-value=5.9e-14 Score=100.46 Aligned_cols=77 Identities=10% Similarity=0.180 Sum_probs=69.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-----CCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~-----~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
..+|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|++|++.|||..+.| ..+.+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG----QEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC----eEEEE
Confidence 5699999999999999999999999999999998776 34699999999999999999999999999 57888
Q ss_pred EeeccC
Q 021177 184 REYDSR 189 (316)
Q Consensus 184 ~~~~~~ 189 (316)
..+...
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 877554
No 239
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9.5e-14 Score=102.77 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=71.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC-----CeEEEEEecCHHHHHHHHHHhCCceecccccce
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~-----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~ 179 (316)
+..+..+|||+|||..+++++|+++|.+|| |..+.+..+.. .+||||+|.+.++|++|+ .||+..+.| .
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~ 84 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN----K 84 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT----E
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC----c
Confidence 445678999999999999999999999999 99999988754 369999999999999999 999999999 5
Q ss_pred EEEEEeeccCC
Q 021177 180 YVRVREYDSRR 190 (316)
Q Consensus 180 ~i~v~~~~~~r 190 (316)
.|.|..+..+.
T Consensus 85 ~l~V~~a~~~~ 95 (104)
T 1wi8_A 85 RIRVDVADQAQ 95 (104)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEccCCC
Confidence 88888876654
No 240
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-13 Score=102.76 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=72.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-----CCeEEEEEecCHHHHHHHHHHh-CCceecccccc
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKL-DRSEFRNAFSR 178 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~-----~~~~afV~f~~~~~A~~A~~~l-~g~~~~g~~~~ 178 (316)
......+|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|++|++.| |+..+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g---- 86 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG---- 86 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS----
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC----
Confidence 34567899999999999999999999999999999998772 2369999999999999999999 9999999
Q ss_pred eEEEEEeeccCC
Q 021177 179 SYVRVREYDSRR 190 (316)
Q Consensus 179 ~~i~v~~~~~~r 190 (316)
..|.|..+....
T Consensus 87 ~~l~v~~a~~~~ 98 (107)
T 2cph_A 87 RRLVLEWADSEV 98 (107)
T ss_dssp CBCEEEECCCCC
T ss_pred CEEEEEeCCCCC
Confidence 478888876654
No 241
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3.6e-14 Score=104.19 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=68.2
Q ss_pred CCCceEEEeCCCC-CCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCc--eecccccceEEEE
Q 021177 107 RSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS--EFRNAFSRSYVRV 183 (316)
Q Consensus 107 ~~~~~l~V~nl~~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~--~~~g~~~~~~i~v 183 (316)
.+..+|||+|||+ .+++++|+++|.+||.|..+.++.++ +||||+|++.++|..|++.||+. .+.| +.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVFG----KPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEETT----EECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceECC----cEEEE
Confidence 3577999999999 99999999999999999999998764 59999999999999999998864 5888 58888
Q ss_pred EeeccC
Q 021177 184 REYDSR 189 (316)
Q Consensus 184 ~~~~~~ 189 (316)
..+...
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 887654
No 242
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-13 Score=102.63 Aligned_cols=82 Identities=28% Similarity=0.345 Sum_probs=72.5
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccce
Q 021177 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (316)
Q Consensus 104 ~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~ 179 (316)
.......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.||+..+.| .
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 85 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG----K 85 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS----C
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC----e
Confidence 3445678999999999999999999999999999999988763 2699999999999999999999999999 4
Q ss_pred EEEEEeeccC
Q 021177 180 YVRVREYDSR 189 (316)
Q Consensus 180 ~i~v~~~~~~ 189 (316)
.|.|..+...
T Consensus 86 ~l~v~~a~~~ 95 (105)
T 1x5u_A 86 PIRVNKASAH 95 (105)
T ss_dssp BCEEEETTTT
T ss_pred EEEEEECCCC
Confidence 7888887654
No 243
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=7.1e-14 Score=102.11 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=70.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~ 184 (316)
......+|||+|||+.+++++|+++|.+||.|. +.+..+...+||||+|.+.++|++|++.|||..+.|+ .+.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD----TLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSS----CCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCc----EEEEE
Confidence 345578999999999999999999999999997 6777777778999999999999999999999999994 78887
Q ss_pred eeccC
Q 021177 185 EYDSR 189 (316)
Q Consensus 185 ~~~~~ 189 (316)
.+..+
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 76554
No 244
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=9.1e-14 Score=101.66 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=70.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC-------CeEEEEEecCHHHHHHHHHHhCCceecccccceE
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-------GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~-------~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~ 180 (316)
+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|+..||+..+.| ..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG----HK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT----EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 357999999999999999999999999999999987654 2699999999999999999999999999 58
Q ss_pred EEEEeeccCC
Q 021177 181 VRVREYDSRR 190 (316)
Q Consensus 181 i~v~~~~~~r 190 (316)
|.|..+....
T Consensus 80 l~V~~a~~~~ 89 (98)
T 2cpf_A 80 LEVRISERAT 89 (98)
T ss_dssp CEEECSSCSS
T ss_pred EEEEEccCCC
Confidence 8888876543
No 245
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.53 E-value=8e-14 Score=99.12 Aligned_cols=76 Identities=21% Similarity=0.194 Sum_probs=67.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
.+..+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|.+|++.|||..+.| ..+.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 80 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTIR 80 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 4567999999999999999999999999999999987743 3699999999999999999999999998 4777
Q ss_pred EEee
Q 021177 183 VREY 186 (316)
Q Consensus 183 v~~~ 186 (316)
+..+
T Consensus 81 v~~a 84 (85)
T 3mdf_A 81 VNLA 84 (85)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6654
No 246
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-13 Score=102.55 Aligned_cols=82 Identities=10% Similarity=0.155 Sum_probs=72.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhC------Cceecc
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLD------RSEFRN 174 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~------g~~~~g 174 (316)
...+..+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|.+|++.+| +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 345678999999999999999999999999999999997754 3699999999999999999999 999998
Q ss_pred cccceEEEEEeeccCC
Q 021177 175 AFSRSYVRVREYDSRR 190 (316)
Q Consensus 175 ~~~~~~i~v~~~~~~r 190 (316)
..+.|..+..+.
T Consensus 91 ----~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 ----RQLKVDLAVTRD 102 (111)
T ss_dssp ----CEEEEECCCCCC
T ss_pred ----EEEEEEECCCCc
Confidence 588888876653
No 247
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.53 E-value=9.5e-14 Score=103.11 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=71.4
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCcee---ccccc
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEF---RNAFS 177 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~---~g~~~ 177 (316)
......+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|.+|++.||+..+ .|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--- 85 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN--- 85 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC---
Confidence 345578999999999999999999999999999999998654 36999999999999999999999987 66
Q ss_pred ceEEEEEeeccCC
Q 021177 178 RSYVRVREYDSRR 190 (316)
Q Consensus 178 ~~~i~v~~~~~~r 190 (316)
..+.|..+....
T Consensus 86 -~~l~v~~a~~~~ 97 (106)
T 2dgp_A 86 -RPIQVKPADSES 97 (106)
T ss_dssp -SCCEEEECCCCS
T ss_pred -ceEEEEECCccc
Confidence 478888776543
No 248
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.52 E-value=1.3e-13 Score=102.63 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=70.3
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC---eEEEEEecCHHHHHHHHHHhCCceecccccce
Q 021177 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (316)
Q Consensus 103 ~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~ 179 (316)
++...+..+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|++|++.||+..+.| .
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 98 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG----R 98 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT----E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC----c
Confidence 344566889999999999999999999999999999999987643 699999999999999999999999999 4
Q ss_pred EEEEEee
Q 021177 180 YVRVREY 186 (316)
Q Consensus 180 ~i~v~~~ 186 (316)
.|.|..+
T Consensus 99 ~l~V~~a 105 (107)
T 3ulh_A 99 PMNIQLV 105 (107)
T ss_dssp ECEEEEE
T ss_pred EEEEEEe
Confidence 6776654
No 249
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.52 E-value=2.7e-14 Score=126.91 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=67.8
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccC---Cc--e
Q 021177 2 SSRSSRTLYVGN--LPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GY--R 74 (316)
Q Consensus 2 ~~~~~~~l~V~n--Lp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~---g~--~ 74 (316)
++.|+++||||| |+..+|+++|+++|++||+|..|.|.. .+|||||+|.+.++|++|++.|||..+. |+ .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 468999999999 578999999999999999999998864 4899999999999999999999998883 45 5
Q ss_pred EEEEEcc
Q 021177 75 LRVELAH 81 (316)
Q Consensus 75 l~v~~a~ 81 (316)
|.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777764
No 250
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.52 E-value=9.7e-14 Score=100.89 Aligned_cols=79 Identities=22% Similarity=0.283 Sum_probs=70.4
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC---eEEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
......+|||+|||..+++++|+++|.+||.|..+.+..++.+ +||||+|.+.++|.+|++.||+..+.| ..|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 87 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG----RPI 87 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC----CEE
Confidence 4456789999999999999999999999999999999987653 699999999999999999999999999 477
Q ss_pred EEEeec
Q 021177 182 RVREYD 187 (316)
Q Consensus 182 ~v~~~~ 187 (316)
.|..++
T Consensus 88 ~V~~a~ 93 (95)
T 2ywk_A 88 NVSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 776653
No 251
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=6.8e-14 Score=101.92 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=70.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEE-EEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~-~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
+.++|||+|||..+++++|.++|.+||.|..+ .+..++. .+||||+|.+.++|++|++.||+..+.| ..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN----RPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT----EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 46799999999999999999999999999999 8887643 3699999999999999999999999998 5888
Q ss_pred EEeeccCC
Q 021177 183 VREYDSRR 190 (316)
Q Consensus 183 v~~~~~~r 190 (316)
|..+....
T Consensus 80 v~~a~~~~ 87 (96)
T 1x5t_A 80 VSYAFKKD 87 (96)
T ss_dssp EEESCCCC
T ss_pred EEEecccC
Confidence 88876553
No 252
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-13 Score=99.04 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=68.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEee
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
....+|||+|||..+++++|+++|.+||.|..+.+..+ ||||+|.+.++|++|++.||+..+.| ..+.|..+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKG----KRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETT----EECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEEC
Confidence 45679999999999999999999999999999999865 99999999999999999999999999 58888887
Q ss_pred ccC
Q 021177 187 DSR 189 (316)
Q Consensus 187 ~~~ 189 (316)
...
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 655
No 253
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-13 Score=99.78 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=70.7
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccc
Q 021177 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (316)
Q Consensus 103 ~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 178 (316)
+....+..+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|++|++.||+..+.|
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---- 85 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG---- 85 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT----
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC----
Confidence 34455678999999999999999999999999999999988754 3699999999999999999999999999
Q ss_pred eEEEEEee
Q 021177 179 SYVRVREY 186 (316)
Q Consensus 179 ~~i~v~~~ 186 (316)
..+.|..+
T Consensus 86 ~~l~v~~a 93 (94)
T 2e5h_A 86 RVIKASIA 93 (94)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEec
Confidence 57777654
No 254
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.1e-13 Score=100.15 Aligned_cols=79 Identities=8% Similarity=0.087 Sum_probs=68.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHh--CCceecccccceEEEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL--DRSEFRNAFSRSYVRV 183 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l--~g~~~~g~~~~~~i~v 183 (316)
..+..+|||+|||+.+++++|+++|.+||.|..+.+..+ .+||||+|++.++|..|++.+ ++..+.| +.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRN----QPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETT----EECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC----cEEEE
Confidence 345789999999999999999999999999999988875 579999999999999999977 5677888 58888
Q ss_pred EeeccCC
Q 021177 184 REYDSRR 190 (316)
Q Consensus 184 ~~~~~~r 190 (316)
..+....
T Consensus 86 ~~a~~~~ 92 (101)
T 2cq1_A 86 QYSNHKE 92 (101)
T ss_dssp EECSCSS
T ss_pred EEcCccc
Confidence 8876543
No 255
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.1e-13 Score=103.66 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=72.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHH---HHHhhcCCeEEEEEeecCC-------CeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 106 RRSDYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDRG-------GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~---~~f~~~G~v~~~~~~~~~~-------~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
.....+|||+|||+.+++++|. ++|.+||.|..+.+..+.. .|||||+|.+.++|++|++.||+..+.|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g- 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG- 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT-
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC-
Confidence 3456799999999999999999 9999999999999987754 2699999999999999999999999999
Q ss_pred ccceEEEEEeeccCC
Q 021177 176 FSRSYVRVREYDSRR 190 (316)
Q Consensus 176 ~~~~~i~v~~~~~~r 190 (316)
+.|.|..+..+.
T Consensus 91 ---r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 ---RTLKASLGTTKY 102 (111)
T ss_dssp ---EEEEEESCCCCS
T ss_pred ---EEEEEEeccccc
Confidence 589998876653
No 256
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.52 E-value=1.3e-13 Score=99.59 Aligned_cols=80 Identities=21% Similarity=0.390 Sum_probs=69.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC--CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.||+..+.|+ .+.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~----~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGR----EIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB----CCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc----EEEE
Confidence 34568999999999999999999999999999999987532 37999999999999999999999999994 6777
Q ss_pred EeeccC
Q 021177 184 REYDSR 189 (316)
Q Consensus 184 ~~~~~~ 189 (316)
..+...
T Consensus 81 ~~a~~~ 86 (92)
T 2dgv_A 81 RIDRNA 86 (92)
T ss_dssp EECSCC
T ss_pred EEcCCC
Confidence 766554
No 257
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-13 Score=100.81 Aligned_cols=76 Identities=24% Similarity=0.360 Sum_probs=64.8
Q ss_pred CCCeEEEcCCC-------CCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEE
Q 021177 5 SSRTLYVGNLP-------GDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (316)
Q Consensus 5 ~~~~l~V~nLp-------~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v 77 (316)
....|.|.-.. ..+|+++|+++|++||+|.+|.|+ +.++|||||+|.+.++|++|++.+++ +.|++|.|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 45567776554 468999999999999999999997 46799999999999999999997554 67999999
Q ss_pred EEcccCC
Q 021177 78 ELAHGGR 84 (316)
Q Consensus 78 ~~a~~~~ 84 (316)
.|+....
T Consensus 85 ~~a~~~~ 91 (100)
T 2d9o_A 85 SWLEGQP 91 (100)
T ss_dssp ECSSCCC
T ss_pred EEccCCC
Confidence 9987654
No 258
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.6e-13 Score=100.18 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=69.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceec--ccccceEEEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR--NAFSRSYVRVR 184 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~--g~~~~~~i~v~ 184 (316)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|++|++.||+..+. | ..+.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g----~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPD----RRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSS----CBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCC----cEEEEE
Confidence 44679999999999999999999999999999998876 469999999999999999999999999 7 478888
Q ss_pred eeccC
Q 021177 185 EYDSR 189 (316)
Q Consensus 185 ~~~~~ 189 (316)
.+..+
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 77654
No 259
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.51 E-value=4.8e-15 Score=109.66 Aligned_cols=70 Identities=21% Similarity=0.367 Sum_probs=60.7
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEE
Q 021177 11 VGNLPGDTRMREVEDLF------------YKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (316)
Q Consensus 11 V~nLp~~~t~~~L~~~F------------~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~ 76 (316)
+.|||..+|+++|+++| ++||+|.+|.|+. +++++|||||+|.++++|.+|+..|||..++|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45566667777777666 9999999999965 357899999999999999999999999999999999
Q ss_pred EEEc
Q 021177 77 VELA 80 (316)
Q Consensus 77 v~~a 80 (316)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 260
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.8e-13 Score=102.15 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=70.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEee
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
...++|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|.+|+..||+..+.| ..+.|..+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEG----HVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETT----EECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECC----cEEEEEec
Confidence 45679999999999999999999999999999999887 5699999999999999999999999999 58888887
Q ss_pred ccCC
Q 021177 187 DSRR 190 (316)
Q Consensus 187 ~~~r 190 (316)
....
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6654
No 261
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.51 E-value=3.5e-13 Score=105.16 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=73.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~ 180 (316)
......+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|.+|++.||+..+.| ..
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 113 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN----KR 113 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS----CE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eE
Confidence 345568999999999999999999999999999999998765 3699999999999999999999999999 58
Q ss_pred EEEEeeccCC
Q 021177 181 VRVREYDSRR 190 (316)
Q Consensus 181 i~v~~~~~~r 190 (316)
|.|..+....
T Consensus 114 l~v~~a~~~~ 123 (139)
T 1u6f_A 114 LKVALAASGH 123 (139)
T ss_dssp EEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 8888876653
No 262
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.51 E-value=2.1e-13 Score=96.49 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=68.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 110 ~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
.+|||+|||..+++++|.++|.+||.|..+.+..++. .+||||+|.+.++|++|++.|||..+.| ..+.+..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----RPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC----cEEEEEe
Confidence 5899999999999999999999999999999998754 3699999999999999999999999998 5788877
Q ss_pred eccC
Q 021177 186 YDSR 189 (316)
Q Consensus 186 ~~~~ 189 (316)
+.++
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 6543
No 263
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=8.3e-14 Score=102.50 Aligned_cols=76 Identities=21% Similarity=0.197 Sum_probs=69.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeeccC
Q 021177 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (316)
Q Consensus 110 ~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (316)
++|||+|||..+++++|+++|.+||.|..+.+..+ ..+||||+|.+.++|++|++.||+..+.|+ .+.|..+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGS----RVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSC----CCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCc----EEEEEEccCC
Confidence 47999999999999999999999999999999988 567999999999999999999999999994 7888877654
Q ss_pred C
Q 021177 190 R 190 (316)
Q Consensus 190 r 190 (316)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 264
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.50 E-value=1.7e-13 Score=102.45 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=67.4
Q ss_pred CCCceEEEeCCCCC-CCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 107 RSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 107 ~~~~~l~V~nl~~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
....+|||+|||+. +++++|+++|.+||.|..+.+ ..+||||+|.+.++|++|++.||+..+.| ..|.|..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAG----QTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETT----EECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEE
Confidence 34579999999999 999999999999999999998 34699999999999999999999999999 5788888
Q ss_pred eccC
Q 021177 186 YDSR 189 (316)
Q Consensus 186 ~~~~ 189 (316)
+...
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7644
No 265
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2e-13 Score=100.92 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=70.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhh-cCCeEEEEEeecCCC---eEEEEEecCHHHHHHHHHHhCCce-ecccccceE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSE-FRNAFSRSY 180 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~-~G~v~~~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~-~~g~~~~~~ 180 (316)
..+..+|||+|||..+++++|+++|.+ ||.|..+.+..+..+ +||||+|.+.++|.+|++.||+.. +.|+ .
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~----~ 81 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK----P 81 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS----C
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCE----e
Confidence 345689999999999999999999999 999999999987633 699999999999999999999999 9984 6
Q ss_pred EEEEeeccC
Q 021177 181 VRVREYDSR 189 (316)
Q Consensus 181 i~v~~~~~~ 189 (316)
+.|..+...
T Consensus 82 l~v~~a~~~ 90 (104)
T 2dhg_A 82 VRLSVAIPK 90 (104)
T ss_dssp CCCCBCCCC
T ss_pred EEEEEccCC
Confidence 777666544
No 266
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.2e-13 Score=100.63 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=67.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCc--eecccccceEEEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS--EFRNAFSRSYVRV 183 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~--~~~g~~~~~~i~v 183 (316)
..+..+|||+|||+.+++++|+++|.+||.|..+.+..+ .+||||+|++.++|.+|++.|++. .+.| +.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G----r~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAG----QQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSS----SBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEE
Confidence 345689999999999999999999999999999988764 469999999999999999988654 4778 47888
Q ss_pred EeeccC
Q 021177 184 REYDSR 189 (316)
Q Consensus 184 ~~~~~~ 189 (316)
..+...
T Consensus 86 ~~a~~~ 91 (104)
T 1wex_A 86 NYSTSK 91 (104)
T ss_dssp EECSSS
T ss_pred EEccCc
Confidence 887654
No 267
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.50 E-value=1.6e-13 Score=100.04 Aligned_cols=77 Identities=12% Similarity=0.212 Sum_probs=70.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEE
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~ 184 (316)
..+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|++|++.|||..+.| ..+.|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS----RFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEE
Confidence 56999999999999999999999999999999988754 3799999999999999999999999999 588888
Q ss_pred eeccC
Q 021177 185 EYDSR 189 (316)
Q Consensus 185 ~~~~~ 189 (316)
.+...
T Consensus 78 ~a~~~ 82 (96)
T 2x1f_A 78 YSSNS 82 (96)
T ss_dssp ECSCS
T ss_pred EcCCC
Confidence 87654
No 268
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-13 Score=99.88 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=69.3
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEE--------EEEeecCC----CeEEEEEecCHHHHHHHHHHhCCce
Q 021177 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSE 171 (316)
Q Consensus 104 ~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~--------~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~ 171 (316)
++.....+|||+|||..+++++|+++|.+||.|.. +.+..++. .|||||+|.+.++|++|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34556789999999999999999999999999999 99988754 2699999999999999999999999
Q ss_pred ecccccceEEEEEee
Q 021177 172 FRNAFSRSYVRVREY 186 (316)
Q Consensus 172 ~~g~~~~~~i~v~~~ 186 (316)
+.|+ .+.|..+
T Consensus 88 ~~g~----~l~V~~A 98 (99)
T 2la6_A 88 FSGN----PIKVSFA 98 (99)
T ss_dssp SSSS----BCEEEEC
T ss_pred eCCc----EEEEEec
Confidence 9994 6666553
No 269
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.8e-13 Score=101.55 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=70.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
.....+|||+|||..+++++|.++|.+||.|..+.+..++.+ |||||+|.+.++|++|+..|||..+.|+ .+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ----PI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS----BC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc----EE
Confidence 345689999999999999999999999999999999987653 7999999999999999999999999994 77
Q ss_pred EEEeeccC
Q 021177 182 RVREYDSR 189 (316)
Q Consensus 182 ~v~~~~~~ 189 (316)
.|..+...
T Consensus 96 ~V~~a~~~ 103 (106)
T 1p27_B 96 SVDWCFVR 103 (106)
T ss_dssp EEEESEES
T ss_pred EEEeecCC
Confidence 77766543
No 270
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.50 E-value=1.8e-13 Score=99.63 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=67.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCce--ecccccceEEEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE--FRNAFSRSYVRVR 184 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~--~~g~~~~~~i~v~ 184 (316)
.+..+|||+|||..+++++|.++|.+||.|..+.+... .|+|||+|++.++|..|++.+++.. +.| +.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~--kg~AFVef~~~~~A~~Av~~ln~~~~~i~G----r~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK--KRQALVEFEDVLGACNAVNYAADNQIYIAG----HPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCEEETT----EEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhcCCCceeCC----cEEEEE
Confidence 45679999999999999999999999999999998854 4699999999999999999999876 667 588888
Q ss_pred eecc
Q 021177 185 EYDS 188 (316)
Q Consensus 185 ~~~~ 188 (316)
.+..
T Consensus 93 ~S~~ 96 (100)
T 3r27_A 93 YSTS 96 (100)
T ss_dssp ECSC
T ss_pred eccc
Confidence 8654
No 271
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.8e-13 Score=101.81 Aligned_cols=82 Identities=22% Similarity=0.350 Sum_probs=71.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeE--------EEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCcee
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEF 172 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~--------~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~ 172 (316)
......+|||+|||..+++++|+++|.+||.|. .+.+..++. .+||||+|.+.++|++|++.||+..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 688887743 36999999999999999999999999
Q ss_pred cccccceEEEEEeeccCC
Q 021177 173 RNAFSRSYVRVREYDSRR 190 (316)
Q Consensus 173 ~g~~~~~~i~v~~~~~~r 190 (316)
.| ..|.|..+....
T Consensus 91 ~g----~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QG----SKLKVSLARKKP 104 (113)
T ss_dssp TT----EECEEECSSCCC
T ss_pred CC----CEEEEEECCCCC
Confidence 98 588888876653
No 272
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.1e-13 Score=99.26 Aligned_cols=81 Identities=22% Similarity=0.288 Sum_probs=71.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEE-EEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~-~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
......+|||+|||+.+++++|+++|.+||.|..+ .+..++.++.|||+|.+.++|..|+..|||..+.|+ .+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~----~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENF----TLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSC----BCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCc----EEEE
Confidence 34456899999999999999999999999999999 588888777899999999999999999999999994 7777
Q ss_pred EeeccC
Q 021177 184 REYDSR 189 (316)
Q Consensus 184 ~~~~~~ 189 (316)
..+...
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 776543
No 273
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.6e-13 Score=100.90 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=66.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
.....+|||+|||..+++++|+++|.+||.|..+........+||||+|.+.++|++|+..||+..+.| ..|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG----RAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC----eEEEEEE
Confidence 345789999999999999999999999998832222112234799999999999999999999999998 5888888
Q ss_pred eccCC
Q 021177 186 YDSRR 190 (316)
Q Consensus 186 ~~~~r 190 (316)
+....
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 76653
No 274
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.49 E-value=2.2e-13 Score=101.88 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=71.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
.....+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|..|+..|||..+.| ..+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l 98 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QTI 98 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----cEE
Confidence 34578999999999999999999999999999999987753 3699999999999999999999999998 588
Q ss_pred EEEeeccC
Q 021177 182 RVREYDSR 189 (316)
Q Consensus 182 ~v~~~~~~ 189 (316)
.|..+...
T Consensus 99 ~V~~a~~~ 106 (110)
T 1oo0_B 99 QVDWCFVK 106 (110)
T ss_dssp EEEESEES
T ss_pred EEEEcccC
Confidence 88876654
No 275
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.1e-13 Score=97.09 Aligned_cols=76 Identities=18% Similarity=0.144 Sum_probs=68.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhc--CCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
.....+|||+|||..+++++|+++|.+| |.|..+.+.. +||||+|.+.++|.+|+..||+..+.| ..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVLDG----SPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEETT----EEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEeCC----cEEEE
Confidence 3456899999999999999999999999 9999988764 499999999999999999999999998 58888
Q ss_pred EeeccC
Q 021177 184 REYDSR 189 (316)
Q Consensus 184 ~~~~~~ 189 (316)
..+...
T Consensus 84 ~~a~~~ 89 (99)
T 2cpd_A 84 TLAKPV 89 (99)
T ss_dssp ECCCCC
T ss_pred EECCCC
Confidence 887654
No 276
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.49 E-value=4.6e-14 Score=106.56 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCC--CC---CHHHHHHHhhcCCCeeEEEeccC-------CCCCcEEEEEECCHHHHHHHHHhCCCcccC
Q 021177 4 RSSRTLYVGNLPG--DT---RMREVEDLFYKYGPIVDIDLKIP-------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (316)
Q Consensus 4 ~~~~~l~V~nLp~--~~---t~~~L~~~F~~~G~V~~i~i~~~-------~~~~g~aFVef~~~e~A~~A~~~l~g~~~~ 71 (316)
.|+++|++.|+-. ++ .+++|+++|++||+|.+|.|+.+ +.++|||||+|.++++|.+|++.|||..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4899999999942 22 36899999999999999999542 345699999999999999999999999999
Q ss_pred CceEEEEEccc
Q 021177 72 GYRLRVELAHG 82 (316)
Q Consensus 72 g~~l~v~~a~~ 82 (316)
|+.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999764
No 277
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.49 E-value=6.8e-14 Score=101.58 Aligned_cols=79 Identities=10% Similarity=0.090 Sum_probs=67.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCC--eEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCce----eccc
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSE----FRNA 175 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~--v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~----~~g~ 175 (316)
.....+|||+|||+.+|+++|.++|++||. +..+.+..++. .|||||+|.+.++|++|++.||+.. ++|
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G- 84 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG- 84 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT-
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC-
Confidence 345679999999999999999999999995 66888887754 3699999999999999999999974 777
Q ss_pred ccceEEEEEeecc
Q 021177 176 FSRSYVRVREYDS 188 (316)
Q Consensus 176 ~~~~~i~v~~~~~ 188 (316)
+.+.|..++.
T Consensus 85 ---r~i~V~~Aks 94 (95)
T 2lkz_A 85 ---KTIGVDFAKS 94 (95)
T ss_dssp ---EEEEEEECCC
T ss_pred ---EEEEEEEccC
Confidence 5888887653
No 278
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=2.6e-13 Score=99.48 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=70.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|++|++.||+..+.| ..+.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRG----KQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTT----BCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCC----ceEEEEE
Confidence 345679999999999999999999999999999999865 4699999999999999999999999999 4788887
Q ss_pred eccCC
Q 021177 186 YDSRR 190 (316)
Q Consensus 186 ~~~~r 190 (316)
+....
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 76543
No 279
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-13 Score=100.17 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=66.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCC-eEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCC-ceecccccceEEEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR-SEFRNAFSRSYVRVR 184 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~-v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g-~~~~g~~~~~~i~v~ 184 (316)
...++|||+|||..+++++|+++|.+||. |..+.+.. .+||||+|.+.++|++|++.||+ ..+.| ..+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK---SGYAFVDYPDQNWAIRAIETLSGKVELHG----KIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE---TTEEEECCSCHHHHHHHHHHHTTTCEETT----EECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC---CCEEEEEECCHHHHHHHHHHccCCeeECC----EEEEEE
Confidence 34679999999999999999999999999 66565542 46999999999999999999999 99998 588888
Q ss_pred eeccCC
Q 021177 185 EYDSRR 190 (316)
Q Consensus 185 ~~~~~r 190 (316)
.+....
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 876653
No 280
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.49 E-value=1.6e-13 Score=102.32 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=69.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
.....+|||+|||..+++++|+++|.+||.|..+.+. .|||||+|.+.++|++|++.|||..+.| ..+.|..
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFAN----QPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETT----EECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEE
Confidence 3457899999999999999999999999999999998 4699999999999999999999999998 5888888
Q ss_pred eccCC
Q 021177 186 YDSRR 190 (316)
Q Consensus 186 ~~~~r 190 (316)
+....
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 76543
No 281
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.9e-13 Score=102.93 Aligned_cols=79 Identities=6% Similarity=0.076 Sum_probs=69.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCC--ceecccccceEEEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVRV 183 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g--~~~~g~~~~~~i~v 183 (316)
..+..+|||+|||+.+++++|+++|.+||.|..+.++.+ .+||||+|++.++|.+|++.+++ ..+.| +.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G----r~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTT----BCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECC----eEEEE
Confidence 345679999999999999999999999999999999876 46999999999999999998874 57888 47888
Q ss_pred EeeccCC
Q 021177 184 REYDSRR 190 (316)
Q Consensus 184 ~~~~~~r 190 (316)
..+....
T Consensus 102 ~~a~~k~ 108 (119)
T 2ad9_A 102 QFSNHKE 108 (119)
T ss_dssp EECSSSS
T ss_pred EEccCCC
Confidence 8876543
No 282
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=2.6e-13 Score=96.42 Aligned_cols=76 Identities=14% Similarity=0.217 Sum_probs=66.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHh-CCceecccccceEEEE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL-DRSEFRNAFSRSYVRV 183 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l-~g~~~~g~~~~~~i~v 183 (316)
......+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|.+|+..| ++..+.|+ .+.+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g~----~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNGR----RLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETTE----ECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECCC----EEEE
Confidence 3455689999999999999999999999999999999875 469999999999999999999 99999984 6666
Q ss_pred Eee
Q 021177 184 REY 186 (316)
Q Consensus 184 ~~~ 186 (316)
..+
T Consensus 82 ~~a 84 (85)
T 2ytc_A 82 KWG 84 (85)
T ss_dssp EEC
T ss_pred Eec
Confidence 553
No 283
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.48 E-value=5.9e-14 Score=101.25 Aligned_cols=76 Identities=14% Similarity=0.247 Sum_probs=66.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcC-CeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhC-CceecccccceEEEE
Q 021177 110 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLD-RSEFRNAFSRSYVRV 183 (316)
Q Consensus 110 ~~l~V~nl~~~~t~~~l~~~f~~~G-~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~-g~~~~g~~~~~~i~v 183 (316)
.+|||+|||..+++++|+++|.+|| .|..+.++.++. .|||||+|.+.++|++|++.++ +..+.| +.+.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----r~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG----QKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT----EEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC----EEEEE
Confidence 5899999999999999999999999 899999987654 3799999999999999998875 557888 58888
Q ss_pred EeeccC
Q 021177 184 REYDSR 189 (316)
Q Consensus 184 ~~~~~~ 189 (316)
..+.++
T Consensus 78 ~~a~~~ 83 (91)
T 2lxi_A 78 HYSDPK 83 (91)
T ss_dssp ECCCSC
T ss_pred EEcCCC
Confidence 877654
No 284
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.48 E-value=4.6e-13 Score=106.60 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=71.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
....+|||+|||..+++++|+++|.+||.|..|.+..+..+ +||||+|.+.++|++|++.||+..+.| ..|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD----RIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 45689999999999999999999999999999999988653 699999999999999999999999998 5888
Q ss_pred EEeeccC
Q 021177 183 VREYDSR 189 (316)
Q Consensus 183 v~~~~~~ 189 (316)
|..+...
T Consensus 113 V~~a~~~ 119 (156)
T 1h2v_Z 113 TDWDAGF 119 (156)
T ss_dssp EEEESCC
T ss_pred EEECCCC
Confidence 8888654
No 285
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.9e-13 Score=99.98 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=68.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
.....+|||+|||..+++++|+++|.+||.|..+.++.++. .+||||+|.+.++|++|++.||+..+.| +.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l 87 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS----RKV 87 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT----EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC----eEE
Confidence 34568999999999999999999999999998766665543 3799999999999999999999999999 578
Q ss_pred EEEeeccC
Q 021177 182 RVREYDSR 189 (316)
Q Consensus 182 ~v~~~~~~ 189 (316)
.|..+..+
T Consensus 88 ~V~~a~~~ 95 (98)
T 2cqp_A 88 KLVLGSGP 95 (98)
T ss_dssp EEEESSCS
T ss_pred EEEEcCCC
Confidence 88876543
No 286
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.48 E-value=2.6e-13 Score=107.50 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=70.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEee
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
....+|||+||++.+++++|+++|.+||.|..+.+..+..++||||+|.+.++|++|++.|||..+.|. .+.|+|+.+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~--g~~L~V~~A 121 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLRIDFS 121 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS--CSCEEEEEC
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC--CcEEEEEEe
Confidence 335679999999999999999999999999999998776678999999999999999999999999651 147888887
Q ss_pred ccC
Q 021177 187 DSR 189 (316)
Q Consensus 187 ~~~ 189 (316)
+..
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 654
No 287
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=4.3e-13 Score=99.37 Aligned_cols=81 Identities=14% Similarity=0.207 Sum_probs=71.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~ 180 (316)
......+|||+|||+.+++++|+++|.+||.|..+.+..++.+ +||||+|.+.++|++|+.. |+..+.| ..
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g----~~ 86 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG----RN 86 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC----EE
Confidence 4456789999999999999999999999999999999987543 6999999999999999988 9999999 57
Q ss_pred EEEEeeccCC
Q 021177 181 VRVREYDSRR 190 (316)
Q Consensus 181 i~v~~~~~~r 190 (316)
|.|..+....
T Consensus 87 l~V~~a~~~~ 96 (105)
T 2dh8_A 87 IDPKPCTPRG 96 (105)
T ss_dssp EBCCCSCCSS
T ss_pred EEEEEccCCC
Confidence 8887766543
No 288
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.48 E-value=1.9e-13 Score=105.25 Aligned_cols=81 Identities=19% Similarity=0.207 Sum_probs=71.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~ 180 (316)
...+..+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|++|++.||+..+.| ..
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g----~~ 117 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----RR 117 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS----SC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----EE
Confidence 345678999999999999999999999999999999987743 3699999999999999999999999999 47
Q ss_pred EEEEeeccC
Q 021177 181 VRVREYDSR 189 (316)
Q Consensus 181 i~v~~~~~~ 189 (316)
|.|..+...
T Consensus 118 l~V~~a~~~ 126 (129)
T 2kxn_B 118 IRVDFSITK 126 (129)
T ss_dssp CEESCCSSS
T ss_pred EEEEEecCC
Confidence 788776554
No 289
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.47 E-value=4.7e-13 Score=99.73 Aligned_cols=80 Identities=18% Similarity=0.203 Sum_probs=70.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
.....+|||+|||..+++++|+++|.+||.|..+.+..++.+ |||||+|.+.++|+.|++.+||..+.| ..|
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g----~~l 98 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG----RPM 98 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS----SCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 345689999999999999999999999999999999987543 699999999999999999999999999 477
Q ss_pred EEEeeccC
Q 021177 182 RVREYDSR 189 (316)
Q Consensus 182 ~v~~~~~~ 189 (316)
.|..+..+
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 77776543
No 290
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.2e-13 Score=101.75 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=70.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC--CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
.....+|||+|||..+++++|+++|.+||.|..+.+..+.. .|||||+|.+.++|++|++.|||..+.| ..+.|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V 101 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKIEV 101 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEE
Confidence 44578999999999999999999999999999999987754 4799999999999999999999999999 57888
Q ss_pred Eeecc
Q 021177 184 REYDS 188 (316)
Q Consensus 184 ~~~~~ 188 (316)
..+..
T Consensus 102 ~~a~~ 106 (109)
T 2err_A 102 NNATA 106 (109)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 77654
No 291
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=9.1e-13 Score=94.91 Aligned_cols=79 Identities=18% Similarity=0.258 Sum_probs=69.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC---eEEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
......+|||+|||+.+++++|+++|.+| .|..+.+..+..+ |||||+|.+.++|++|+. +|+..+.| +.|
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g----r~i 79 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG----RYI 79 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT----EEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC----cEE
Confidence 34456899999999999999999999999 9999999987443 699999999999999999 99999999 588
Q ss_pred EEEeeccC
Q 021177 182 RVREYDSR 189 (316)
Q Consensus 182 ~v~~~~~~ 189 (316)
.|..+...
T Consensus 80 ~v~~a~~~ 87 (91)
T 2dgw_A 80 EVFREKSG 87 (91)
T ss_dssp EEEEESSC
T ss_pred EEEECCcC
Confidence 88877554
No 292
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.47 E-value=5.1e-13 Score=101.13 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=68.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~ 180 (316)
......+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|++|++.|||..+.|+ .
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~ 111 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK----R 111 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE----E
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE----E
Confidence 345678999999999999999999999999999999987743 36999999999999999999999999994 6
Q ss_pred EEEEee
Q 021177 181 VRVREY 186 (316)
Q Consensus 181 i~v~~~ 186 (316)
|.|+.+
T Consensus 112 l~V~~a 117 (118)
T 2khc_A 112 LKVQLK 117 (118)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 666543
No 293
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=9.1e-13 Score=99.45 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=70.9
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccce
Q 021177 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (316)
Q Consensus 104 ~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~ 179 (316)
.......+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|++|++.+++ .+.| .
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g----~ 86 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG----R 86 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT----E
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC----E
Confidence 3445678999999999999999999999999999999998754 36999999999999999999998 8888 5
Q ss_pred EEEEEeeccC
Q 021177 180 YVRVREYDSR 189 (316)
Q Consensus 180 ~i~v~~~~~~ 189 (316)
.|.|..+...
T Consensus 87 ~l~V~~a~~~ 96 (116)
T 2cqd_A 87 KANVNLAYLG 96 (116)
T ss_dssp ECEEEESTTT
T ss_pred EEEEEEcccC
Confidence 8888887543
No 294
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=6.4e-13 Score=100.10 Aligned_cols=80 Identities=8% Similarity=0.086 Sum_probs=70.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCe----EEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v----~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
.+..+|||+|||..+++++|.++|.+||.| ..+.+......+||||+|.+.++|+.|++.||+..+.| ..|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG----KILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS----CBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC----cEEE
Confidence 456899999999999999999999999998 56666655666899999999999999999999999998 4788
Q ss_pred EEeeccCC
Q 021177 183 VREYDSRR 190 (316)
Q Consensus 183 v~~~~~~r 190 (316)
|..+....
T Consensus 99 v~~a~~~~ 106 (115)
T 2cpx_A 99 IEFGKNKK 106 (115)
T ss_dssp EEECCCCS
T ss_pred EEEccCCC
Confidence 88876654
No 295
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=2.1e-13 Score=99.34 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=66.2
Q ss_pred CCCceEEEeCCCC-CCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 107 RSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 107 ~~~~~l~V~nl~~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
.+..+|||+|||+ .+++++|.++|.+||.|..+.+. .+||||+|.+.++|..|++.||+..+.|+ .+.|..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGK----KLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTT----TBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCc----EEEEEE
Confidence 4578999999998 99999999999999999999986 35999999999999999999999999985 666666
Q ss_pred eccC
Q 021177 186 YDSR 189 (316)
Q Consensus 186 ~~~~ 189 (316)
+...
T Consensus 80 a~~~ 83 (96)
T 2kvi_A 80 SSSN 83 (96)
T ss_dssp EECC
T ss_pred cCcC
Confidence 6543
No 296
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.46 E-value=6.4e-13 Score=96.97 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=67.5
Q ss_pred CCCCCceEEEeCCCC-CCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 105 SRRSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
...+..+|||+|||. .+++++|+++|.+||.|..+.+. .|||||+|.+.++|.+|+..|||..+.| ..+.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFG----KKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETT----EECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECC----EEEEE
Confidence 345678999999998 99999999999999999999985 4699999999999999999999999998 57888
Q ss_pred Eeecc
Q 021177 184 REYDS 188 (316)
Q Consensus 184 ~~~~~ 188 (316)
..+..
T Consensus 90 ~~a~~ 94 (97)
T 2xnq_A 90 EVSSS 94 (97)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 77654
No 297
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.46 E-value=2.5e-13 Score=101.78 Aligned_cols=78 Identities=14% Similarity=0.170 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCc
Q 021177 4 RSSRTLYVGNLPGDT----------RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~----------t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~ 73 (316)
-|+++|.+.|+=..- .+++|+++|++||.|.+|.|..+ .++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 478999999994322 23578999999999999999654 3589999999999999999999999999999
Q ss_pred eEEEEEccc
Q 021177 74 RLRVELAHG 82 (316)
Q Consensus 74 ~l~v~~a~~ 82 (316)
.|.|.++..
T Consensus 84 ~i~v~~~~~ 92 (114)
T 3s6e_A 84 MITAAYVPL 92 (114)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEEcH
Confidence 999999753
No 298
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.45 E-value=1.5e-13 Score=118.79 Aligned_cols=81 Identities=22% Similarity=0.235 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc--CCCCCcEEEEEECCHHHHHHHHHhCC-CcccC---CceEEE
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRD-GYNFD---GYRLRV 77 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~--~~~~~g~aFVef~~~e~A~~A~~~l~-g~~~~---g~~l~v 77 (316)
.+.++|||+|||+.+|+++|.++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|| |..+. |++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999954 67789999999999999999999995 44544 999999
Q ss_pred EEcccCC
Q 021177 78 ELAHGGR 84 (316)
Q Consensus 78 ~~a~~~~ 84 (316)
.++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9987653
No 299
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2e-12 Score=94.34 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=67.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
..+.++|||+|| .+++++|+++|.+||.|..+.+. ...+||||+|.+.++|.+|+..||+..+.| ..+.|..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETT----EEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEE
Confidence 345679999996 89999999999999999999885 445799999999999999999999999998 5888888
Q ss_pred eccCC
Q 021177 186 YDSRR 190 (316)
Q Consensus 186 ~~~~r 190 (316)
+....
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 76653
No 300
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.45 E-value=1e-13 Score=99.81 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=64.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcC--CeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 110 YRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 110 ~~l~V~nl~~~~t~~~l~~~f~~~G--~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
.+|||+|||..+++++|+++|.+|| .|..+.+..++.+ |||||+|.+.++|++|++.|||..+.|+ .|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr----~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ----NPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC----CCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE----EEEE
Confidence 4799999999999999999999999 9999999987543 6999999999999999999999999994 7777
Q ss_pred EeeccC
Q 021177 184 REYDSR 189 (316)
Q Consensus 184 ~~~~~~ 189 (316)
..+...
T Consensus 78 ~~~~~~ 83 (90)
T 3p5t_L 78 TPSNKL 83 (90)
T ss_dssp CCC---
T ss_pred EECCCC
Confidence 766543
No 301
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.3e-13 Score=102.46 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=69.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
...+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|+ .||+..+.| ..|.|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V 98 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG----VPIIV 98 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT----EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC----eEEEE
Confidence 457999999999999999999999999999999997654 369999999999999999 999999999 58888
Q ss_pred EeeccC
Q 021177 184 REYDSR 189 (316)
Q Consensus 184 ~~~~~~ 189 (316)
..+...
T Consensus 99 ~~a~~~ 104 (114)
T 2cq4_A 99 QASQAE 104 (114)
T ss_dssp EEHHHH
T ss_pred EecCCC
Confidence 876654
No 302
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=2e-12 Score=98.18 Aligned_cols=77 Identities=10% Similarity=0.047 Sum_probs=66.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeE-EEEEecCHHHHHHHHHHhCCceecccccceEEEEEeec
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT-GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~-afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (316)
...|||+||++.+++++|.++|.+||.|..+.+... . |+ |||+|.+.++|..|++.|||..+.|. .+.|+|..++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~-Gf~aFVef~~~~~A~~A~~~LnG~~i~g~--~~~l~V~~Ak 100 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-N-GIQAMVEFESVLCAQKAKAALNGADIYAG--CCTLKIEYAR 100 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-S-SEEEEEEESSHHHHHHHHHHHTTCCCBTT--BSEEEEECCS
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-C-CCEEEEEECCHHHHHHHHHHhCCCEecCC--CeEEEEEEec
Confidence 345789999999999999999999999999998764 3 65 99999999999999999999999873 2478888876
Q ss_pred cC
Q 021177 188 SR 189 (316)
Q Consensus 188 ~~ 189 (316)
..
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 303
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.45 E-value=1.2e-12 Score=99.98 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=72.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC---CeEEEEEecCHHHHHHHHHHhCCceecccccceE
Q 021177 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (316)
Q Consensus 104 ~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~ 180 (316)
+.....++|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|.+|++.||+..+.| ..
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~ 105 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG----RP 105 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS----CE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC----cE
Confidence 3456678999999999999999999999999999999998763 3699999999999999999999999999 47
Q ss_pred EEEEeeccC
Q 021177 181 VRVREYDSR 189 (316)
Q Consensus 181 i~v~~~~~~ 189 (316)
|.|..+...
T Consensus 106 l~V~~a~~~ 114 (124)
T 2kt5_A 106 MDIQLVASQ 114 (124)
T ss_dssp EEEEEECCT
T ss_pred EEEEEeCCC
Confidence 888876553
No 304
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.45 E-value=7.8e-13 Score=94.77 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=67.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEE
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~ 184 (316)
..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|+ .+|+..+.| ..+.+.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g----~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG----RQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT----EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC----cEEEEE
Confidence 46999999999999999999999999999999998753 369999999999999999 999999999 588888
Q ss_pred eecc
Q 021177 185 EYDS 188 (316)
Q Consensus 185 ~~~~ 188 (316)
.++.
T Consensus 81 ~a~~ 84 (89)
T 3ucg_A 81 PKRT 84 (89)
T ss_dssp ETTT
T ss_pred EccC
Confidence 7654
No 305
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.44 E-value=9e-13 Score=94.07 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=65.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
.....+|||+|||..+++++|+++|.+||.|..+.+..++. .|||||+|.+.++|++|++ +++..+.| ..+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~~i 82 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG----RVI 82 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC----EEE
Confidence 34567999999999999999999999999999999998765 3699999999999999995 58888988 466
Q ss_pred EEEe
Q 021177 182 RVRE 185 (316)
Q Consensus 182 ~v~~ 185 (316)
.|..
T Consensus 83 ~v~~ 86 (87)
T 3s7r_A 83 DPKK 86 (87)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6654
No 306
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=4.3e-13 Score=98.64 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=65.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeec
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (316)
..++|||+|||..+++++|+++|.+||.|..+.+. ...+||||+|.+.++|..|+..|||..+.| ..+.|..++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQG----RNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETT----EECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEecc
Confidence 46799999999999999999999999999999988 345799999999999999999999999999 466665543
No 307
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=6.5e-13 Score=97.84 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=66.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC---eEEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
......+|||+|||+.+++++|+++|.+||.+ .+.++.++.+ +||||+|.+.++|++|+ .+|+..+.|+ .|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr----~i 84 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHR----YV 84 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSS----CC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCc----EE
Confidence 34556899999999999999999999999955 8998887643 69999999999999999 5799999984 66
Q ss_pred EEEeecc
Q 021177 182 RVREYDS 188 (316)
Q Consensus 182 ~v~~~~~ 188 (316)
.|..+..
T Consensus 85 ~V~~~~~ 91 (102)
T 1wez_A 85 ELFLNST 91 (102)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 6666543
No 308
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.44 E-value=9.4e-13 Score=100.45 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=69.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEee
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
.....|+|+||++.+++++|.++|.+||.|..+.+.....+.+|||+|.+.++|..|++.|||..+.|. .+.|+++.+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~--~~~LrI~~a 103 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLRIDFS 103 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETT--EEEEEEEEC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCC--CcEEEEEec
Confidence 345678899999999999999999999999999888765433499999999999999999999999872 357888887
Q ss_pred ccC
Q 021177 187 DSR 189 (316)
Q Consensus 187 ~~~ 189 (316)
+..
T Consensus 104 k~~ 106 (130)
T 3zzy_A 104 KLT 106 (130)
T ss_dssp SCS
T ss_pred CCC
Confidence 654
No 309
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.44 E-value=8.5e-13 Score=100.82 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=68.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
...+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|.+|+ .|||..+.| ..|.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG----RTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC----eEEEE
Confidence 357999999999999999999999999999999988743 369999999999999999 899999999 58888
Q ss_pred EeeccC
Q 021177 184 REYDSR 189 (316)
Q Consensus 184 ~~~~~~ 189 (316)
...+..
T Consensus 110 ~~a~~~ 115 (124)
T 2jwn_A 110 LPKRTN 115 (124)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 887643
No 310
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.44 E-value=2.2e-13 Score=98.98 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=66.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
+...+|||+|||+.+++++|+++|.+||.|..+.+..++.. +||||+|.+.++|++|++.||+..+.| +.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----r~l~ 88 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS----RKVK 88 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC----cEEE
Confidence 34689999999999999999999999999987777765433 699999999999999999999999999 5777
Q ss_pred EEeec
Q 021177 183 VREYD 187 (316)
Q Consensus 183 v~~~~ 187 (316)
|..+.
T Consensus 89 v~~a~ 93 (95)
T 2ek1_A 89 LSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 76643
No 311
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.6e-12 Score=93.97 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=68.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~ 180 (316)
......+|||+|||..+++++|+++|.+||.|..+.+..++.+ +||||+|.+.++|++|+. ++..+.| ..
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g----~~ 84 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG----RW 84 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT----EE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC----eE
Confidence 3445679999999999999999999999999999999987643 699999999999999998 4678888 58
Q ss_pred EEEEeeccC
Q 021177 181 VRVREYDSR 189 (316)
Q Consensus 181 i~v~~~~~~ 189 (316)
+.|..+..+
T Consensus 85 l~v~~a~~~ 93 (103)
T 2cqg_A 85 CDCKLPNSK 93 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEEecCCC
Confidence 888887654
No 312
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.44 E-value=6.1e-13 Score=100.22 Aligned_cols=79 Identities=20% Similarity=0.231 Sum_probs=70.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC-CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
.+..+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+.| ..+.+..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN----RYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS----CBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEE
Confidence 4467999999999999999999999999999999987654 4799999999999999999999999998 4777777
Q ss_pred eccC
Q 021177 186 YDSR 189 (316)
Q Consensus 186 ~~~~ 189 (316)
+...
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 6543
No 313
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2e-12 Score=97.24 Aligned_cols=83 Identities=16% Similarity=0.253 Sum_probs=71.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC---eEEEEEecCHHHHHHHHHHhCCceecccc----cc
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAF----SR 178 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~g~~----~~ 178 (316)
.....+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|++|++.|||..+.+.. ..
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345689999999999999999999999999999999987643 69999999999999999999999997654 34
Q ss_pred eEEEEEeecc
Q 021177 179 SYVRVREYDS 188 (316)
Q Consensus 179 ~~i~v~~~~~ 188 (316)
..+.+..+++
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 5677777653
No 314
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.1e-12 Score=97.11 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=67.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEE-EEEeecCC---CeEEEEEecCHHHHHHHHHHhCCceecccccce
Q 021177 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (316)
Q Consensus 104 ~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~-~~~~~~~~---~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~ 179 (316)
+......+|||+|||+.+++++|+++|.+||.|.. +.+..+.. .|||||+|.+.++|++|+.. |+..+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr---- 84 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR---- 84 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc----
Confidence 34456789999999999999999999999999987 77776633 37999999999999999987 99999984
Q ss_pred EEEEEeecc
Q 021177 180 YVRVREYDS 188 (316)
Q Consensus 180 ~i~v~~~~~ 188 (316)
.|.|.....
T Consensus 85 ~i~v~~~~~ 93 (104)
T 1wg5_A 85 YIEIFKSSR 93 (104)
T ss_dssp CCEEEEECT
T ss_pred EEEEEECCH
Confidence 666666543
No 315
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.43 E-value=2.5e-13 Score=99.74 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=68.0
Q ss_pred CceEEEeCCCC------CCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecc-ccc
Q 021177 109 DYRVLVTGLPS------SASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRN-AFS 177 (316)
Q Consensus 109 ~~~l~V~nl~~------~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g-~~~ 177 (316)
.++|||+|||. .+++++|.++|.+||.|..+.++.++.+ |||||+|.+.++|++|++.|||..+.| +
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r-- 83 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH-- 83 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC--
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe--
Confidence 57999999999 9999999999999999999999988753 699999999999999999999999998 5
Q ss_pred ceEEEEEeecc
Q 021177 178 RSYVRVREYDS 188 (316)
Q Consensus 178 ~~~i~v~~~~~ 188 (316)
.|.|..+.+
T Consensus 84 --~l~V~~a~~ 92 (100)
T 3ns6_A 84 --RLFLYTMKD 92 (100)
T ss_dssp --BCEEEESHH
T ss_pred --EEEEEECch
Confidence 666665543
No 316
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=5.5e-13 Score=99.33 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=67.1
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCC--ceecccccceEEE
Q 021177 106 RRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVR 182 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g--~~~~g~~~~~~i~ 182 (316)
..+..+|||+|||++ +++++|+++|.+||.|..+.+... .+||||+|++.++|..|++.|++ ..+.| +.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G----r~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM--KSQAFIEMETREDAMAMVDHCLKKALWFQG----RCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHHHSCCCSSS----SCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEE
Confidence 445789999999998 999999999999999999999754 46999999999999999998864 55888 4788
Q ss_pred EEeeccC
Q 021177 183 VREYDSR 189 (316)
Q Consensus 183 v~~~~~~ 189 (316)
|..+...
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 8876554
No 317
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=6.9e-13 Score=101.52 Aligned_cols=80 Identities=10% Similarity=0.115 Sum_probs=68.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHHhhcCCeEEEEEeec-CCCeEEEEEecCHHHHHHHHHHhCCceecccccceE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~----~~f~~~G~v~~~~~~~~-~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~ 180 (316)
..+..+|||+|||+.+++++|+ ++|.+||.|..+.+... ...|||||+|.+.++|..|+..|||..+.|+ .
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr----~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN----P 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS----C
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC----E
Confidence 3456799999999999999876 69999999999988653 3458999999999999999999999999994 7
Q ss_pred EEEEeeccC
Q 021177 181 VRVREYDSR 189 (316)
Q Consensus 181 i~v~~~~~~ 189 (316)
|.|..+...
T Consensus 102 l~V~~a~~~ 110 (127)
T 2a3j_A 102 LVITFSETP 110 (127)
T ss_dssp CEEEECCCC
T ss_pred EEEEEccCc
Confidence 778776543
No 318
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-12 Score=102.01 Aligned_cols=79 Identities=23% Similarity=0.217 Sum_probs=69.4
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccc
Q 021177 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (316)
Q Consensus 103 ~~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 178 (316)
........+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|++|++.||+..+.|
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---- 132 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG---- 132 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT----
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC----
Confidence 34455678999999999999999999999999999999987743 4799999999999999999999999998
Q ss_pred eEEEEEe
Q 021177 179 SYVRVRE 185 (316)
Q Consensus 179 ~~i~v~~ 185 (316)
..|.|..
T Consensus 133 ~~l~v~~ 139 (140)
T 2ku7_A 133 RTIRVNL 139 (140)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 4676654
No 319
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=7e-13 Score=97.78 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=65.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC---CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEE
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~ 184 (316)
...+|||+|||+.+++++|.++|.+||.|..+.+..++. .|||||+|.+.++|..|+. +++..+.|+ .+.|.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr----~l~V~ 84 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKET----DLLIL 84 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTT----TCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCE----EEEEE
Confidence 457999999999999999999999999999999998654 3799999999999999998 999999995 55665
Q ss_pred e
Q 021177 185 E 185 (316)
Q Consensus 185 ~ 185 (316)
.
T Consensus 85 ~ 85 (103)
T 1s79_A 85 F 85 (103)
T ss_dssp E
T ss_pred E
Confidence 4
No 320
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.43 E-value=8.8e-13 Score=104.82 Aligned_cols=77 Identities=19% Similarity=0.117 Sum_probs=68.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcC--CeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G--~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
...+|||+|||+.+++++|+++|.+|| .|..+.++.+..+ |||||+|.+.++|++|++.|||..+.| +.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G----r~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG----EKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT----EEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----eEe
Confidence 457999999999999999999999999 9999999987543 699999999999999999999999999 578
Q ss_pred EEEeecc
Q 021177 182 RVREYDS 188 (316)
Q Consensus 182 ~v~~~~~ 188 (316)
.|..+..
T Consensus 130 ~V~~a~~ 136 (156)
T 3n9u_C 130 DVRPATR 136 (156)
T ss_dssp EEEECCH
T ss_pred EEEEcCC
Confidence 8877643
No 321
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.4e-12 Score=96.00 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=66.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~ 180 (316)
......+|||+|||..+++++|+++|..|+ .+.++.+.. .+||||+|.+.++|++|++.||+..+.| ..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG----NK 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC----eE
Confidence 345678999999999999999999999875 444554432 2699999999999999999999999999 58
Q ss_pred EEEEeeccCC
Q 021177 181 VRVREYDSRR 190 (316)
Q Consensus 181 i~v~~~~~~r 190 (316)
|.|..+....
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2fc8_A 84 VTLDWAKPKG 93 (102)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 8888877654
No 322
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=3.1e-13 Score=101.22 Aligned_cols=75 Identities=21% Similarity=0.305 Sum_probs=67.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeec
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (316)
..++|||+|||..+++++|+++|.+||.|..+.+.. ..+||||+|.+.++|+.|+..|||..+.|+ .|.|..+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~----~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHV----PLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSS----BCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCe----EEEEEECC
Confidence 457999999999999999999999999999998875 446999999999999999999999999994 77777765
Q ss_pred c
Q 021177 188 S 188 (316)
Q Consensus 188 ~ 188 (316)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 323
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.4e-12 Score=94.50 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=62.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC-eEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEee
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~-~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~ 186 (316)
...+|||+|||+.+++++|+++|.+||.|..+ ..+..+ .||||+|.+.++|.+|++ ||+..+.| ..+.|..+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g----~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGG----HRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETT----EECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECC----EEEEEEEC
Confidence 35699999999999999999999999999987 333322 299999999999999999 99999999 46766654
Q ss_pred c
Q 021177 187 D 187 (316)
Q Consensus 187 ~ 187 (316)
.
T Consensus 80 ~ 80 (94)
T 2e5g_A 80 E 80 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 324
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=7.7e-13 Score=98.47 Aligned_cols=76 Identities=28% Similarity=0.328 Sum_probs=66.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC---CeEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
.....+|||+|||+.+++++|+++|..| .|..+.+..++. .|||||+|.+.++|++|+ .+|+..+.| +.|.
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g----r~i~ 86 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ----RYVE 86 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETT----EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECC----eEEE
Confidence 3445799999999999999999999999 899999987754 379999999999999999 799999999 5777
Q ss_pred EEeec
Q 021177 183 VREYD 187 (316)
Q Consensus 183 v~~~~ 187 (316)
|..+.
T Consensus 87 V~~a~ 91 (109)
T 2dnn_A 87 VSPAT 91 (109)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 76654
No 325
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.1e-12 Score=98.94 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=69.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
...+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|++|+.. ++..+.| ..|.|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g----~~l~V 100 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG----RVVEP 100 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT----EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC----EEEEE
Confidence 457999999999999999999999999999999998754 36999999999999999987 9999998 58888
Q ss_pred EeeccCC
Q 021177 184 REYDSRR 190 (316)
Q Consensus 184 ~~~~~~r 190 (316)
..+..+.
T Consensus 101 ~~a~~~~ 107 (116)
T 1x4b_A 101 KRAVARE 107 (116)
T ss_dssp ECCSSCC
T ss_pred EECCCCc
Confidence 8876653
No 326
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.1e-13 Score=96.91 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=62.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
+..+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|++|++.|||..+.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 75 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence 467999999999999999999999999999999988754 36999999999999999999999999884
No 327
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.42 E-value=1.1e-12 Score=99.30 Aligned_cols=79 Identities=27% Similarity=0.378 Sum_probs=69.2
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCC---eEEEEEeecCCC---eEEEEEecCHHHHHHHHHHhCCceecccccc
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~---v~~~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 178 (316)
......+|||+|||+.+++++|+++|..||. |..+.+..+..+ |||||+|.+.++|++|++ +|+..+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g---- 87 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH---- 87 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT----
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC----
Confidence 3456789999999999999999999999999 889999877554 699999999999999998 99999998
Q ss_pred eEEEEEeecc
Q 021177 179 SYVRVREYDS 188 (316)
Q Consensus 179 ~~i~v~~~~~ 188 (316)
+.|.|..+..
T Consensus 88 r~i~V~~a~~ 97 (118)
T 2db1_A 88 RYIEVFKSHR 97 (118)
T ss_dssp EEEEEEEECH
T ss_pred eEEEEEECCH
Confidence 5788876543
No 328
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.3e-13 Score=99.16 Aligned_cols=78 Identities=28% Similarity=0.356 Sum_probs=69.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
..++|||+|||..+++++|+++|.+||.|..+.+..++.. +||||+|.+.++|++|++.|||..+.|+ .+.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v 82 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR----ALRV 82 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS----CBEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc----EEEE
Confidence 3579999999999999999999999999999999987543 6999999999999999999999999984 7788
Q ss_pred EeeccC
Q 021177 184 REYDSR 189 (316)
Q Consensus 184 ~~~~~~ 189 (316)
..+...
T Consensus 83 ~~a~~~ 88 (104)
T 1p1t_A 83 DNAASE 88 (104)
T ss_dssp EETTCT
T ss_pred EeCCCc
Confidence 776654
No 329
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.41 E-value=7.3e-13 Score=96.40 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=67.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
.....+|||+|||..+++++|+++|.+||.|..+ .......|||||+|.+.++|.+|+..||+..+.| ..|.+..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEE
Confidence 3456899999999999999999999999998877 2222334799999999999999999999999999 5888888
Q ss_pred eccC
Q 021177 186 YDSR 189 (316)
Q Consensus 186 ~~~~ 189 (316)
+..+
T Consensus 88 a~~~ 91 (96)
T 1fjc_A 88 TGEK 91 (96)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 7554
No 330
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.41 E-value=8.6e-14 Score=108.18 Aligned_cols=118 Identities=12% Similarity=0.106 Sum_probs=64.8
Q ss_pred cEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHH
Q 021177 46 GYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (316)
Q Consensus 46 g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 125 (316)
++||.+|..++.+..++.++..+ +.|...--.. .............+|||+|||+.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~------------------g~~~~~~~~~~~~~lfV~nLp~~~te~d 62 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGS------------------GDSEFTVQSTTGHCVHMRGLPYKATEND 62 (139)
T ss_dssp --------------------------------------------------------------CCCCEECCSCCTTCCHHH
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCC------------------CCcccCCCCCCCCEEEEeCCCCCCCHHH
Confidence 67888888888887777655433 2222210000 0001112234567999999999999999
Q ss_pred HHHHHhhcCCeEEEEEeecCC---CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeecc
Q 021177 126 LKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (316)
Q Consensus 126 l~~~f~~~G~v~~~~~~~~~~---~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (316)
|+++|.+|| +..+.++.++. .|||||+|.+.++|++|+ .+|+..+.|+ .|.|.....
T Consensus 63 L~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR----~i~V~~a~~ 122 (139)
T 2hgn_A 63 IYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHR----YIELFLNST 122 (139)
T ss_dssp HHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC----CCCCEECCC
T ss_pred HHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCE----EEEEEECCC
Confidence 999999999 66899887754 369999999999999999 8999999995 566655443
No 331
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.41 E-value=5.3e-13 Score=93.98 Aligned_cols=66 Identities=11% Similarity=0.108 Sum_probs=59.5
Q ss_pred ceEEEeCCCCCC------CHHHHHHHHhhcCCeEEEEEeecC--CCeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 110 YRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRDR--GGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 110 ~~l~V~nl~~~~------t~~~l~~~f~~~G~v~~~~~~~~~--~~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
++|||+|||..+ ++++|+++|.+||.|..+.+.... ..|||||+|.+.++|.+|++.|||..+.|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 589999999999 679999999999999999988432 237999999999999999999999999985
No 332
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.40 E-value=5.7e-13 Score=97.14 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=69.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHHhhcCCeEEEEEeec-CCCeEEEEEecCHHHHHHHHHHhCCceecccccceE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~----~~f~~~G~v~~~~~~~~-~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~ 180 (316)
..+..+|||+|||..+++++|+ ++|.+||.|..+.+... ...+||||+|.+.++|..|+..|||..+.| ..
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD----KP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC----cE
Confidence 3457899999999999999999 99999999999988742 223699999999999999999999999998 58
Q ss_pred EEEEeeccC
Q 021177 181 VRVREYDSR 189 (316)
Q Consensus 181 i~v~~~~~~ 189 (316)
+.+..+...
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 888877654
No 333
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.40 E-value=1.5e-12 Score=96.51 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=67.3
Q ss_pred CCCceEEEeCCCCCC------CHHHHHHHHhhcCCeEEEEEeecC--CCeEEEEEecCHHHHHHHHHHhCCceecccccc
Q 021177 107 RSDYRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRDR--GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~------t~~~l~~~f~~~G~v~~~~~~~~~--~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 178 (316)
...++|||+|||+.+ ++++|.++|.+||.|..+.+.... ..|||||+|.+.++|.+|+..|||..+.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~--- 89 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ--- 89 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT---
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC---
Confidence 346799999999999 789999999999999999988432 237999999999999999999999999982
Q ss_pred eEEEEEeecc
Q 021177 179 SYVRVREYDS 188 (316)
Q Consensus 179 ~~i~v~~~~~ 188 (316)
..+.|..+..
T Consensus 90 ~~l~V~~a~~ 99 (105)
T 2nlw_A 90 HTFRVNLFTD 99 (105)
T ss_dssp CEEEEECSCC
T ss_pred ceEEEEEcch
Confidence 1777776643
No 334
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=9e-13 Score=98.26 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=65.9
Q ss_pred CCCceEEE--eCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCcee-cccccceEEEE
Q 021177 107 RSDYRVLV--TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF-RNAFSRSYVRV 183 (316)
Q Consensus 107 ~~~~~l~V--~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~-~g~~~~~~i~v 183 (316)
.+..+||| +||++.+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|++|++.|||..+ ..-.....+.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 34678999 779999999999999999999999888753 47999999999999999999999988 21111357777
Q ss_pred Eeecc
Q 021177 184 REYDS 188 (316)
Q Consensus 184 ~~~~~ 188 (316)
.....
T Consensus 101 ~~a~~ 105 (114)
T 2cq2_A 101 NFVEK 105 (114)
T ss_dssp EEESC
T ss_pred Eeccc
Confidence 77654
No 335
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.40 E-value=7.7e-13 Score=102.13 Aligned_cols=78 Identities=6% Similarity=0.127 Sum_probs=68.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEE--EEEeecCC----CeEEEEEecCHHHHHHHHHHhCCc----eecccc
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--SQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRS----EFRNAF 176 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~--~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~----~~~g~~ 176 (316)
....+|||+|||+.+++++|+++|.+||.|.. +.++.++. .|||||+|.+. +|.+|+..||+. .+.|+
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr- 98 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK- 98 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE-
Confidence 45679999999999999999999999999976 89988763 36999999999 999999999999 99984
Q ss_pred cceEEEEEeeccC
Q 021177 177 SRSYVRVREYDSR 189 (316)
Q Consensus 177 ~~~~i~v~~~~~~ 189 (316)
.|.|..+...
T Consensus 99 ---~l~V~~a~~~ 108 (131)
T 2m2b_A 99 ---TINVEFAKGS 108 (131)
T ss_dssp ---CCCCEECCCS
T ss_pred ---EEEEEECCCC
Confidence 6777776553
No 336
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.40 E-value=9.2e-13 Score=101.99 Aligned_cols=79 Identities=24% Similarity=0.338 Sum_probs=69.2
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHhhcCC---eEEEEEeecCCC---eEEEEEecCHHHHHHHHHHhCCceeccccc
Q 021177 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (316)
Q Consensus 104 ~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~---v~~~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 177 (316)
++.....+|||+|||+.+++++|+++|.+||. |..+.+..++.+ |||||+|.+.++|++|++ +|+..+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g--- 114 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGH--- 114 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS---
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC---
Confidence 44456789999999999999999999999999 788999887654 699999999999999998 99999999
Q ss_pred ceEEEEEeec
Q 021177 178 RSYVRVREYD 187 (316)
Q Consensus 178 ~~~i~v~~~~ 187 (316)
+.|.|..+.
T Consensus 115 -r~i~V~~a~ 123 (136)
T 2hgl_A 115 -RYIEVFKSH 123 (136)
T ss_dssp -SEEEEEECC
T ss_pred -EEEEEEECC
Confidence 478777653
No 337
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.6e-12 Score=92.28 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=62.6
Q ss_pred CceEEEeCCCCCCCHHH----HHHHHhhc-CCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 109 DYRVLVTGLPSSASWQD----LKDHMRRA-GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~----l~~~f~~~-G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
.+.|||+|||..+++++ |.++|.+| |+|..+ .+|+|||+|.+.++|.+|++.|||..+.| +.|++
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~g----r~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFG----NRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSS----SCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCC----ceEEE
Confidence 44499999999999887 56899999 599988 23799999999999999999999999999 48888
Q ss_pred EeeccCC
Q 021177 184 REYDSRR 190 (316)
Q Consensus 184 ~~~~~~r 190 (316)
..+...+
T Consensus 79 ~~A~~~s 85 (96)
T 2diu_A 79 SFTPKNR 85 (96)
T ss_dssp ESSCCSC
T ss_pred EecCCCc
Confidence 8876654
No 338
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.39 E-value=1.9e-12 Score=96.53 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=67.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
....+|||+|||..+++++|+++|.+||.|..+.+..+.. .|||||+|.+.++|.+|+..+ +..+.| ..+.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g----~~l~ 97 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS----KTID 97 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC----EEEE
Confidence 4567999999999999999999999999999999998754 369999999999999999876 488888 5888
Q ss_pred EEeeccCC
Q 021177 183 VREYDSRR 190 (316)
Q Consensus 183 v~~~~~~r 190 (316)
+..+..+.
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 88876543
No 339
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.5e-12 Score=97.99 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=68.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCe-EEEEEeecCC---CeEEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v-~~~~~~~~~~---~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
.....+|||+|||+.+++++|+++|.+||.| ..+.++.+.. .|||||+|.+.++|++|++. |+..+.| +.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g----r~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG----REA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT----EEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC----eEE
Confidence 3456799999999999999999999999999 7888887663 37999999999999999977 9999999 588
Q ss_pred EEEeecc
Q 021177 182 RVREYDS 188 (316)
Q Consensus 182 ~v~~~~~ 188 (316)
.|..+..
T Consensus 87 ~v~~a~~ 93 (114)
T 2cpy_A 87 FVHVVTL 93 (114)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 8877654
No 340
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.38 E-value=4.1e-13 Score=98.58 Aligned_cols=78 Identities=18% Similarity=0.324 Sum_probs=65.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-----CCeEEEEEecCHHHHHHHHHHhCCceecccccce
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~-----~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~ 179 (316)
.....++|||+|||..+++++|+++|.+|| |..+.+..+. ..|||||+|.+.++|.+|+ .|||..+.|+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~---- 88 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR---- 88 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB----
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe----
Confidence 345678999999999999999999999999 9999998775 2379999999999999999 9999999994
Q ss_pred EEEEEeecc
Q 021177 180 YVRVREYDS 188 (316)
Q Consensus 180 ~i~v~~~~~ 188 (316)
.+.|..+..
T Consensus 89 ~l~V~~a~~ 97 (100)
T 2j76_E 89 RIRVDVADQ 97 (100)
T ss_dssp CCCCEECCC
T ss_pred EEEEEeccC
Confidence 666666543
No 341
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.38 E-value=6.8e-13 Score=91.91 Aligned_cols=69 Identities=22% Similarity=0.315 Sum_probs=61.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEE
Q 021177 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (316)
Q Consensus 111 ~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~ 184 (316)
+|||+|||+.+++++|+++|.+||.|..+.+..++. .|||||+|.+.++|++|++ +|+..+.|+ .+.+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~----~l~v~ 73 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNK----MVECK 73 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSC----CCEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCE----EEEEE
Confidence 589999999999999999999999999999987753 3799999999999999996 999999995 55554
No 342
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2e-12 Score=98.77 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=65.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEE-EeecCC---CeEEEEEecCHHHHHHHHHHhCCceecccccce
Q 021177 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ-VFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (316)
Q Consensus 104 ~~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~-~~~~~~---~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~ 179 (316)
.+.....+|||+|||+.+++++|.++|..||.|..+. +..+.. .|||||+|.+.++|.+|++ +|+..+.|+
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr---- 94 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR---- 94 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS----
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc----
Confidence 3445678999999999999999999999999998743 333332 3799999999999999998 999999995
Q ss_pred EEEEEeecc
Q 021177 180 YVRVREYDS 188 (316)
Q Consensus 180 ~i~v~~~~~ 188 (316)
.|.|..+..
T Consensus 95 ~i~V~~a~~ 103 (124)
T 1wel_A 95 FIQVHPITK 103 (124)
T ss_dssp CBEEEEECH
T ss_pred EEEEEECCH
Confidence 677766543
No 343
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=8.4e-13 Score=91.88 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=62.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 110 ~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
++|||+|||..+++++|+++|.+||.|..+.+..++. .|||||+|.+.++|++|++.++ ..+.|+ .+.+..
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~----~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSK----TIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSC----CCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCE----EEEEEe
Confidence 3799999999999999999999999999999988754 3699999999999999999999 888885 555543
No 344
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.36 E-value=1.8e-12 Score=92.79 Aligned_cols=74 Identities=22% Similarity=0.312 Sum_probs=66.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeec
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (316)
...+|||+|||+.+++++|+++|.+| .|..+.+. ...|||||+|.+.++|++|++.|||..+.| ..+.+..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG----KDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETT----EEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECC----cEEEEEEcC
Confidence 35699999999999999999999999 99999885 455799999999999999999999999999 588888765
Q ss_pred c
Q 021177 188 S 188 (316)
Q Consensus 188 ~ 188 (316)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 345
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.36 E-value=3.1e-12 Score=91.21 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=63.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhc----C-------CeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
....+|||+|||+.+++++|+++|.+| | .|..+.+..+ .+||||+|.+.++|.+|+ .||+..+.|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 346799999999999999999999999 8 8999988865 579999999999999999 9999999994
Q ss_pred ccceEEEEE
Q 021177 176 FSRSYVRVR 184 (316)
Q Consensus 176 ~~~~~i~v~ 184 (316)
.+.|.
T Consensus 81 ----~l~V~ 85 (87)
T 2hzc_A 81 ----SLKIR 85 (87)
T ss_dssp ----ECEEE
T ss_pred ----EEEEe
Confidence 55554
No 346
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.9e-12 Score=94.23 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=67.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCC-eEEEEEe-ecC----CCeEEEEEecCHHHHHHHHHHhC--Cceecccccce
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVF-RDR----GGMTGIVDYTSYDDMKYAIRKLD--RSEFRNAFSRS 179 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~-v~~~~~~-~~~----~~~~afV~f~~~~~A~~A~~~l~--g~~~~g~~~~~ 179 (316)
+.++|||+|||..+++++|.++|.+||. |..+.+. .+. ..+||||+|.+.++|..|++.|| +..+.| .
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g----~ 82 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG----H 82 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT----B
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC----C
Confidence 4679999999999999999999999998 9999888 443 34799999999999999999996 588988 4
Q ss_pred EEEEEeeccC
Q 021177 180 YVRVREYDSR 189 (316)
Q Consensus 180 ~i~v~~~~~~ 189 (316)
.+.|..+...
T Consensus 83 ~l~V~~a~~~ 92 (109)
T 2dis_A 83 QIAVDWAEPE 92 (109)
T ss_dssp CCEEEESCSS
T ss_pred eEEEEEcCCC
Confidence 7888877654
No 347
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.35 E-value=4.9e-12 Score=102.68 Aligned_cols=79 Identities=16% Similarity=0.144 Sum_probs=69.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC---CeEEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
.....++|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.||+..+.|+ .|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr----~l 159 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGR----PM 159 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSS----BC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCE----EE
Confidence 345678999999999999999999999999999999988753 37999999999999999999999999995 66
Q ss_pred EEEeec
Q 021177 182 RVREYD 187 (316)
Q Consensus 182 ~v~~~~ 187 (316)
.|..+.
T Consensus 160 ~V~~a~ 165 (177)
T 2f3j_A 160 DIQLVA 165 (177)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 666654
No 348
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.34 E-value=4.4e-12 Score=99.36 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=67.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEE--------EEEe-ecCCCeEEEEEecCHHHHHHHHHHhCCceeccccc
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVF-RDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~--------~~~~-~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 177 (316)
.+..+|||+|||+.+++++|.++|.+||.|.. +.+. .....|||||+|.+.++|.+|+..|||..+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g--- 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG--- 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC---
Confidence 34679999999999999999999999998875 3333 23445899999999999999999999999999
Q ss_pred ceEEEEEeeccCC
Q 021177 178 RSYVRVREYDSRR 190 (316)
Q Consensus 178 ~~~i~v~~~~~~r 190 (316)
..|.|..+....
T Consensus 120 -~~l~V~~a~~~~ 131 (143)
T 3egn_A 120 -KPMVVQFARSAR 131 (143)
T ss_dssp -EECEEEECCCSC
T ss_pred -cEEEEEECCCCC
Confidence 588888876543
No 349
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.33 E-value=7.3e-12 Score=89.74 Aligned_cols=77 Identities=10% Similarity=0.106 Sum_probs=60.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
..+..+|||+|||+.+++++|+++|++||.|..+.+..+ ..|||||+|.+.++|+ ++++..+.+. ...+.+..
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~----~~~~~~~~~~--g~~v~v~~ 80 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQ----SLCGEDLIIK--GISVHISN 80 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHH----HHTTCEEEET--TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHH----HHcCCCcccC--CEEEEEEE
Confidence 345779999999999999999999999999999999876 4579999999999988 3566665521 25777776
Q ss_pred eccC
Q 021177 186 YDSR 189 (316)
Q Consensus 186 ~~~~ 189 (316)
+.++
T Consensus 81 a~~k 84 (89)
T 3d2w_A 81 AEPK 84 (89)
T ss_dssp CC--
T ss_pred cCCC
Confidence 6543
No 350
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.33 E-value=1.3e-12 Score=97.23 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=66.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCC---eEEEEEeecCC---CeEEEEEecCHHHHHHHHHHhCCceecccccce
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~---v~~~~~~~~~~---~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~ 179 (316)
.....+|||+|||+.+++++|+++|..||. |..+.+..+.. .|||||+|.+.++|++|+. +|+..+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr---- 82 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQR---- 82 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS----
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCe----
Confidence 345779999999999999999999999988 88999987754 3699999999999999998 999999985
Q ss_pred EEEEEeec
Q 021177 180 YVRVREYD 187 (316)
Q Consensus 180 ~i~v~~~~ 187 (316)
.|.|..+.
T Consensus 83 ~i~V~~a~ 90 (107)
T 2lmi_A 83 YVEVYEIN 90 (107)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 55555543
No 351
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.33 E-value=8.2e-13 Score=94.92 Aligned_cols=74 Identities=27% Similarity=0.349 Sum_probs=64.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 110 ~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
++|||+|||..+++++|+++|.+||.|..+.+..++. .|||||+|.+.+ |.+|+..|||..+.|+ .+.+..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~----~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR----TIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS----SCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCe----EEEEEE
Confidence 4899999999999999999999999999999987754 479999999999 9999999999999995 566665
Q ss_pred ecc
Q 021177 186 YDS 188 (316)
Q Consensus 186 ~~~ 188 (316)
+..
T Consensus 77 a~~ 79 (90)
T 2ki2_A 77 ANP 79 (90)
T ss_dssp C--
T ss_pred cCC
Confidence 543
No 352
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.32 E-value=6.7e-12 Score=95.36 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=66.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEe
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~ 185 (316)
..+..+|||+|+ .+++++|+++|.+||.|..+.+. ...+||||+|.+.++|.+|++.||+..+.| ..+.|..
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g----~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSS----CBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEE
Confidence 345789999996 69999999999999999999886 445799999999999999999999999998 4788887
Q ss_pred eccC
Q 021177 186 YDSR 189 (316)
Q Consensus 186 ~~~~ 189 (316)
+...
T Consensus 108 a~~~ 111 (121)
T 2bz2_A 108 ARKQ 111 (121)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 7654
No 353
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.32 E-value=4.5e-12 Score=107.19 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=67.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcC--CeEEEEEeecCCC----eEEEEEecCHHHHHHHHHHhCCceecccccceEE
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G--~v~~~~~~~~~~~----~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i 181 (316)
..++|||+||++.+++++|+++|.+|| .|..+.|+.++.+ +||||+|.+.++|++|++.||+..|.|+ .|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr----~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ----NP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB----CC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE----Ee
Confidence 456899999999999999999999999 9999999988643 6999999999999999999999999994 77
Q ss_pred EEEeec
Q 021177 182 RVREYD 187 (316)
Q Consensus 182 ~v~~~~ 187 (316)
.|..+.
T Consensus 143 ~V~~a~ 148 (229)
T 3q2s_C 143 VVTPVN 148 (229)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 777654
No 354
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.30 E-value=7.8e-12 Score=91.80 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=64.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEee----cCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR----DRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~----~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
....+|||+|||..+++++|+++|.+||.|.. .++. ....+||||+|.+.++|++|++ ||+..+.| ..|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g----~~l~ 88 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG----NEIK 88 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT----BCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC----cEEE
Confidence 35679999999999999999999999998876 3332 2345799999999999999998 99999998 4788
Q ss_pred EEeeccC
Q 021177 183 VREYDSR 189 (316)
Q Consensus 183 v~~~~~~ 189 (316)
|..+..+
T Consensus 89 V~~a~~~ 95 (101)
T 1fj7_A 89 LEKPKGR 95 (101)
T ss_dssp EECCSCC
T ss_pred EEEcCCC
Confidence 8877554
No 355
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=4.3e-12 Score=96.47 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=64.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCe----EEEEEeecCCC---eEEEEEecCHHHHHHHHHHhCCceecccccce
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v----~~~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~ 179 (316)
....+|||+|||+.+++++|+++|.+||.| ..+.++.+..+ |||||+|.+.++|++|++. |+..+.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR---- 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR---- 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe----
Confidence 456799999999999999999999999975 57888876543 7999999999999999976 99988884
Q ss_pred EEEEEeec
Q 021177 180 YVRVREYD 187 (316)
Q Consensus 180 ~i~v~~~~ 187 (316)
.|.|..+.
T Consensus 96 ~i~V~~a~ 103 (123)
T 2dha_A 96 YIELFRST 103 (123)
T ss_dssp EECCEEEC
T ss_pred EEEEEECC
Confidence 66665543
No 356
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=5.5e-12 Score=90.19 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=60.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCcee--cccccceEEEEEe
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF--RNAFSRSYVRVRE 185 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~--~g~~~~~~i~v~~ 185 (316)
...+|||+|||..+++++|+++|.+||.|..+.+..+ ..+||||+|.+.++|++| ++..+ .| ..+.+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~----~~~~~~~~g----~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSL----CGEDLIIKG----ISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHT----TTCEEEETT----EEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHH----hcCCceeCC----EEEEEEe
Confidence 3579999999999999999999999999999999876 457999999999999754 44444 44 5777777
Q ss_pred eccCC
Q 021177 186 YDSRR 190 (316)
Q Consensus 186 ~~~~r 190 (316)
+..+.
T Consensus 75 a~~~~ 79 (88)
T 1wf0_A 75 AEPKH 79 (88)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 65543
No 357
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.29 E-value=7.1e-12 Score=92.20 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=65.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC---eEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
....+|||+|||..+++++|.++|.+||.|..+.+..+..+ |||||+|.+.++|++|+. ++..+.|. .+.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~----~l~v 80 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK----KLKL 80 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTE----ECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCE----EEEE
Confidence 34679999999999999999999999999999999987643 799999999999999997 88888884 5665
Q ss_pred Eeec
Q 021177 184 REYD 187 (316)
Q Consensus 184 ~~~~ 187 (316)
....
T Consensus 81 ~~a~ 84 (102)
T 2xs2_A 81 GPAI 84 (102)
T ss_dssp EEEE
T ss_pred EECC
Confidence 5544
No 358
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.29 E-value=5.5e-12 Score=96.14 Aligned_cols=76 Identities=14% Similarity=0.178 Sum_probs=62.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHhhcCCeE--EEEEeecCC---CeEEEEEecCHHHHHHHHHHhCCceecccccce
Q 021177 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC--FSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (316)
Q Consensus 105 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~--~~~~~~~~~---~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~ 179 (316)
......+|||+|||+.+++++|+++|.+| .|. .+.+..++. .|||||+|.+.++|++|++ +++..+.|+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR---- 111 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHR---- 111 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTB----
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCE----
Confidence 34556799999999999999999999999 666 888887654 3799999999999999997 477889885
Q ss_pred EEEEEee
Q 021177 180 YVRVREY 186 (316)
Q Consensus 180 ~i~v~~~ 186 (316)
.|.|...
T Consensus 112 ~I~V~~a 118 (126)
T 2hgm_A 112 YIEVFKS 118 (126)
T ss_dssp CCCCEEE
T ss_pred EEEEEEC
Confidence 4555443
No 359
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.28 E-value=4.1e-12 Score=87.89 Aligned_cols=64 Identities=11% Similarity=0.161 Sum_probs=58.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 111 ~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
+|||+|||..+++++|+++|.+||.|..+.+..++. .|||||+|.+.++|.+|++ +++..+.|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~ 68 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLS 68 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTB
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCE
Confidence 589999999999999999999999999999987644 4799999999999999997 488889885
No 360
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.93 E-value=3.7e-13 Score=101.66 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=69.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEE--------EEEeecCC----CeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~--------~~~~~~~~----~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
+..+|||+|||..+++++|+++|.+||.|.. +.+..++. .+||||+|.+.++|++|+..||+..+.|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g- 84 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG- 84 (116)
Confidence 4679999999999999999999999999998 77877643 3699999999999999999999999998
Q ss_pred ccceEEEEEeeccCC
Q 021177 176 FSRSYVRVREYDSRR 190 (316)
Q Consensus 176 ~~~~~i~v~~~~~~r 190 (316)
..|.|..+..+.
T Consensus 85 ---~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 ---NPIKVSFATRRA 96 (116)
Confidence 478887776553
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1e-10 Score=87.57 Aligned_cols=80 Identities=16% Similarity=0.296 Sum_probs=66.9
Q ss_pred CCCceEEEeCCCCCCC-----------HHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceeccc
Q 021177 107 RSDYRVLVTGLPSSAS-----------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t-----------~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~ 175 (316)
.+..+|+|.||..... +++|+++|.+||.|..+.+......|||||+|.+.++|++|+..|||..+.|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g- 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG- 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT-
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC-
Confidence 4567999999954432 5799999999999999977544456899999999999999999999999998
Q ss_pred ccceEEEEEeeccCC
Q 021177 176 FSRSYVRVREYDSRR 190 (316)
Q Consensus 176 ~~~~~i~v~~~~~~r 190 (316)
+.|.+..+....
T Consensus 92 ---r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 ---RQITAQAWDGTT 103 (112)
T ss_dssp ---EECEEEECCSCC
T ss_pred ---cEEEEEEeCCCC
Confidence 588888876643
No 362
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.26 E-value=2.4e-11 Score=91.26 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=65.8
Q ss_pred ceEEEeCC----CCCCCHHHHHHHHhhcCCeEEEEEeecCCC----eEEEEEecC----HHH----HHHHHH--HhCCce
Q 021177 110 YRVLVTGL----PSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTS----YDD----MKYAIR--KLDRSE 171 (316)
Q Consensus 110 ~~l~V~nl----~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~afV~f~~----~~~----A~~A~~--~l~g~~ 171 (316)
..|+|+|| |+.+++.+|+++|..||+|..+.+..|+.+ |||||+|.+ +.+ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 999999999999999999999999999887 599999996 433 788988 789999
Q ss_pred ecccccceEEEEEeecc
Q 021177 172 FRNAFSRSYVRVREYDS 188 (316)
Q Consensus 172 ~~g~~~~~~i~v~~~~~ 188 (316)
+.| +.|+|..++.
T Consensus 83 I~G----r~irV~ln~~ 95 (136)
T 2j8a_A 83 IMG----FKFEVILNKH 95 (136)
T ss_dssp ETT----EEEEEEECCT
T ss_pred ecC----cEEEEEECcc
Confidence 999 5888887654
No 363
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=4.6e-11 Score=89.60 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECC-HHHHHHHHHhCC--CcccCCceEEEEE
Q 021177 4 RSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFED-YRDAEDAIRGRD--GYNFDGYRLRVEL 79 (316)
Q Consensus 4 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~-~e~A~~A~~~l~--g~~~~g~~l~v~~ 79 (316)
.+.+.|||+||++. ++.++|+++|++||+|..|.+..+ ...|||+|.+ +++|+.|+..|| |..|.|..++++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g---~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG---AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT---CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC---CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 46788999999999 999999999999999999999754 3379999999 899999999994 7889999999887
Q ss_pred cc
Q 021177 80 AH 81 (316)
Q Consensus 80 a~ 81 (316)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 364
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.7e-11 Score=92.08 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=53.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-------CCeEEEEEecCHHHHHHHHHHh
Q 021177 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-------GGMTGIVDYTSYDDMKYAIRKL 167 (316)
Q Consensus 107 ~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~-------~~~~afV~f~~~~~A~~A~~~l 167 (316)
...++|||+|||+.+++++|+++|.+||.|. +.++.+. ..|||||+|.+.++|++|++.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 3467999999999999999999999999999 7776543 2479999999999999999998
No 365
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.22 E-value=2.7e-10 Score=93.71 Aligned_cols=118 Identities=14% Similarity=0.207 Sum_probs=81.8
Q ss_pred CHHHHHHHHHhC--CCcccCCceEEEEEcccCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHh
Q 021177 54 DYRDAEDAIRGR--DGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMR 131 (316)
Q Consensus 54 ~~e~A~~A~~~l--~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~f~ 131 (316)
+.+.+..|+... ....+.+....|..... .+.+.... .........+|||+|||..+++++|+++|.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~-~p~p~~~~----------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~ 131 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPS-KPLPEVTD----------EYKNDVKNRSVYIKGFPTDATLDDIKEWLE 131 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTT-SCCCCCCH----------HHHHHHHHTEEEEECCCTTCCHHHHHHHHT
T ss_pred CHHHHHHHHhhcccceEEEecccceEEeccc-CCCcccch----------hhhhccccCEEEecCCCCcCCHHHHHHHHh
Confidence 667778888766 45555555444543311 00000000 000011246999999999999999999999
Q ss_pred hcCCeEEEEEeecCCC---eEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeec
Q 021177 132 RAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (316)
Q Consensus 132 ~~G~v~~~~~~~~~~~---~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (316)
+||.|..+.+..+..+ |||||+|.+.++|.+|+..++ ..+.| +.+.|....
T Consensus 132 ~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G----r~l~V~~~~ 185 (193)
T 2voo_A 132 DKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKE----TDLLILFKD 185 (193)
T ss_dssp TSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETT----EECEEEETT
T ss_pred cCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECC----EEEEEEEhH
Confidence 9999999999986543 799999999999999997655 58888 467766543
No 366
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.21 E-value=1.4e-10 Score=85.54 Aligned_cols=77 Identities=14% Similarity=0.175 Sum_probs=65.1
Q ss_pred CCceEEEeCCCC-----CCCHHHHHHHHhhcCCeEEEEEeecC-----CCeEEEEEecCHHHHHHHHHHhCCceeccccc
Q 021177 108 SDYRVLVTGLPS-----SASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (316)
Q Consensus 108 ~~~~l~V~nl~~-----~~t~~~l~~~f~~~G~v~~~~~~~~~-----~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 177 (316)
+..+|+|.|+.. +-++++|+++|.+||.|..+.+..++ ..|+|||+|.+.++|.+|+..|||..+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G--- 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG--- 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC---
Confidence 456899999963 23689999999999999999999864 24899999999999999999999999999
Q ss_pred ceEEEEEeecc
Q 021177 178 RSYVRVREYDS 188 (316)
Q Consensus 178 ~~~i~v~~~~~ 188 (316)
+.|.+..+..
T Consensus 84 -r~i~v~~a~~ 93 (105)
T 2pe8_A 84 -RVVKACFYNL 93 (105)
T ss_dssp -EECEEEECCH
T ss_pred -cEEEEEEcCH
Confidence 5777777653
No 367
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=8.4e-11 Score=82.69 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=62.4
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceE
Q 021177 4 RSSRTLYVGNLP----GDTRM----REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRL 75 (316)
Q Consensus 4 ~~~~~l~V~nLp----~~~t~----~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l 75 (316)
-|.-||+|.-.+ .++-+ .+|.+.|++||+|..+++.. +.+||+|.+.++|.+|+. |||..+.|+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-----d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-----DKMWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-----SSEEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-----CCEEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 366788888776 23444 67899999999999999984 349999999999999999 99999999999
Q ss_pred EEEEccc
Q 021177 76 RVELAHG 82 (316)
Q Consensus 76 ~v~~a~~ 82 (316)
+|+++.+
T Consensus 79 kV~lkt~ 85 (91)
T 2dnr_A 79 TIALKSP 85 (91)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9999774
No 368
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.14 E-value=1e-10 Score=98.73 Aligned_cols=78 Identities=13% Similarity=0.208 Sum_probs=67.5
Q ss_pred CCCCceEEEeCCCCCC---------CHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCcee----
Q 021177 106 RRSDYRVLVTGLPSSA---------SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF---- 172 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~---------t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~---- 172 (316)
.....+|||+||+..+ ++++|.++|.+||.|..+.++.. .|||||+|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 4457899999999998 79999999999999999999865 46999999999999999999999999
Q ss_pred --------cccccceEEEEEeeccC
Q 021177 173 --------RNAFSRSYVRVREYDSR 189 (316)
Q Consensus 173 --------~g~~~~~~i~v~~~~~~ 189 (316)
.| ..|.|..+...
T Consensus 209 ~~e~~~~~~g----r~L~V~wA~~~ 229 (240)
T 3u1l_A 209 DKEWDDRREG----TGLLVKWANED 229 (240)
T ss_dssp STTGGGGGGS----CCCEEEECC--
T ss_pred cccccccCCC----CEEEEEEccCC
Confidence 55 57778776543
No 369
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.07 E-value=6e-10 Score=82.19 Aligned_cols=75 Identities=20% Similarity=0.172 Sum_probs=62.4
Q ss_pred CceEEEeCCC--CCCC--------HHHHHHHHhhcCCeEEEEEeecCC------CeEEEEEecCHHHHHHHHHHhCCcee
Q 021177 109 DYRVLVTGLP--SSAS--------WQDLKDHMRRAGDVCFSQVFRDRG------GMTGIVDYTSYDDMKYAIRKLDRSEF 172 (316)
Q Consensus 109 ~~~l~V~nl~--~~~t--------~~~l~~~f~~~G~v~~~~~~~~~~------~~~afV~f~~~~~A~~A~~~l~g~~~ 172 (316)
...|.+.|+- ..+. +++|++.|++||.|..+.+..+.. .|++||+|.+.++|.+|+..|||..+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 5688889983 3332 368999999999999999987742 47999999999999999999999999
Q ss_pred cccccceEEEEEeec
Q 021177 173 RNAFSRSYVRVREYD 187 (316)
Q Consensus 173 ~g~~~~~~i~v~~~~ 187 (316)
.| +.|.+....
T Consensus 85 ~G----R~i~v~~~~ 95 (105)
T 3v4m_A 85 AN----RVVVTKYCD 95 (105)
T ss_dssp TT----EECEEEEEC
T ss_pred CC----CEEEEEEeC
Confidence 99 577776654
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.05 E-value=9e-10 Score=82.88 Aligned_cols=76 Identities=14% Similarity=0.255 Sum_probs=63.3
Q ss_pred CCceEEEeCCCCC--C---CHHHHHHHHhhcCCeEEEEEeecCCC--------eEEEEEecCHHHHHHHHHHhCCceecc
Q 021177 108 SDYRVLVTGLPSS--A---SWQDLKDHMRRAGDVCFSQVFRDRGG--------MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (316)
Q Consensus 108 ~~~~l~V~nl~~~--~---t~~~l~~~f~~~G~v~~~~~~~~~~~--------~~afV~f~~~~~A~~A~~~l~g~~~~g 174 (316)
+..+|++.|+-.. + -+++|++.|.+||.|..+.+..+..+ |++||+|.+.++|.+|+..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4568999998432 2 26899999999999999999987532 799999999999999999999999999
Q ss_pred cccceEEEEEeec
Q 021177 175 AFSRSYVRVREYD 187 (316)
Q Consensus 175 ~~~~~~i~v~~~~ 187 (316)
+.|.+....
T Consensus 99 ----R~i~v~~~~ 107 (118)
T 3ue2_A 99 ----RKVVAEVYD 107 (118)
T ss_dssp ----EECEEEEEC
T ss_pred ----cEEEEEEcC
Confidence 577776654
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.04 E-value=4.1e-10 Score=100.11 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=59.0
Q ss_pred CCCCceEEEeC--CCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceec
Q 021177 106 RRSDYRVLVTG--LPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (316)
Q Consensus 106 ~~~~~~l~V~n--l~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~ 173 (316)
..+..+|||+| |+..+++++|+++|.+||+|..+.+.. ..+||||+|.+.++|++|++.|||..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 34567999999 578999999999999999999887764 4579999999999999999999999995
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.04 E-value=1.3e-09 Score=81.38 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=63.4
Q ss_pred CCceEEEeCCCCCCC----------HHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceeccccc
Q 021177 108 SDYRVLVTGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t----------~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 177 (316)
+...|.+.|+-.... +++|++.|.+||.|..+.+..+...|++||+|.+.++|.+|+..|||..++|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G--- 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG--- 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT---
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 456788888743222 3588999999999999999887767899999999999999999999999999
Q ss_pred ceEEEEEeec
Q 021177 178 RSYVRVREYD 187 (316)
Q Consensus 178 ~~~i~v~~~~ 187 (316)
+.|.+....
T Consensus 83 -R~i~v~~~~ 91 (114)
T 3s6e_A 83 -KMITAAYVP 91 (114)
T ss_dssp -EECEEEEEC
T ss_pred -EEEEEEEEc
Confidence 577777654
No 373
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.99 E-value=3e-10 Score=83.68 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=55.9
Q ss_pred EeCCCCCCCHHHHHHHH------------hhcCCeEEEEEeecCC---CeEEEEEecCHHHHHHHHHHhCCceecccccc
Q 021177 114 VTGLPSSASWQDLKDHM------------RRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (316)
Q Consensus 114 V~nl~~~~t~~~l~~~f------------~~~G~v~~~~~~~~~~---~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 178 (316)
+.||+..+++++|++.| ++||.|..+.+..+.. .|||||+|.+.++|.+|+..|||..+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr--- 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ--- 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTE---
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCE---
Confidence 45677777777766655 9999999999998753 47999999999999999999999999994
Q ss_pred eEEEEEe
Q 021177 179 SYVRVRE 185 (316)
Q Consensus 179 ~~i~v~~ 185 (316)
.|.+..
T Consensus 97 -~i~v~~ 102 (104)
T 1jmt_A 97 -PIHAEL 102 (104)
T ss_dssp -ECCEEE
T ss_pred -EEEEEE
Confidence 555543
No 374
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=1.3e-08 Score=74.03 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeeccC
Q 021177 119 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (316)
Q Consensus 119 ~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (316)
..+++++|+++|.+||.|..+.+.. ...|||||+|.+.++|+.|++.+++ +.| ..|.|......
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g----~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LVD----NPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CSS----SBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CCC----CeEEEEEccCC
Confidence 5689999999999999999999883 4557999999999999999988555 345 47778776554
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1.9e-09 Score=76.08 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=61.3
Q ss_pred CCCCeEEEcCCCCC-----CCH----HHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCce
Q 021177 4 RSSRTLYVGNLPGD-----TRM----REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (316)
Q Consensus 4 ~~~~~l~V~nLp~~-----~t~----~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~ 74 (316)
=|.-||+|.-+++. +-+ .+|.+.|++||+|..+++..+ -+||+|.+.++|.+|+. |||..+.|+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 47788999888743 333 568899999999999999854 39999999999999999 9999999999
Q ss_pred EEEEEcc
Q 021177 75 LRVELAH 81 (316)
Q Consensus 75 l~v~~a~ 81 (316)
|+|.+..
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9998743
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=6.6e-09 Score=77.83 Aligned_cols=70 Identities=13% Similarity=0.223 Sum_probs=62.2
Q ss_pred CCCCCCceEEEeCCCCC-CCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecC-HHHHHHHHHHhC--Cceeccc
Q 021177 104 VSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS-YDDMKYAIRKLD--RSEFRNA 175 (316)
Q Consensus 104 ~~~~~~~~l~V~nl~~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~-~~~A~~A~~~l~--g~~~~g~ 175 (316)
.....+..|+|+||+.. ++.++|+++|++||.|.+|.+..+.. .|||+|.+ ..+|..|+.++| +..+.|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 44567889999999999 99999999999999999999998876 69999999 899999999994 6667774
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.88 E-value=3e-09 Score=89.45 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=63.7
Q ss_pred CCeEEEcCCC-----CCCCHHHHHHHhhcCCCeeEEEecc-------CCCCCcEEEEEECCHHHHHHHHHhCCCcccCCc
Q 021177 6 SRTLYVGNLP-----GDTRMREVEDLFYKYGPIVDIDLKI-------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (316)
Q Consensus 6 ~~~l~V~nLp-----~~~t~~~L~~~F~~~G~V~~i~i~~-------~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~ 73 (316)
+..+.+.|+- ..-.+++|.+.|++||+|..+.+.. +++++|++||+|.+.++|.+|+..|||..++|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 4445555542 2345688999999999999999942 347889999999999999999999999999999
Q ss_pred eEEEEEccc
Q 021177 74 RLRVELAHG 82 (316)
Q Consensus 74 ~l~v~~a~~ 82 (316)
.|.|.+...
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999753
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.72 E-value=5e-08 Score=70.20 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcC-----CCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKY-----GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~-----G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..++|-+-|||..+++..|+.+++++ |.|..|.+..+ -+=|+|+|.+...|.+|.-.|+|..|+|++|.|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 47899999999999999999999999 99999999654 45699999999999999988999999999999864
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=1.5e-07 Score=66.17 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=58.8
Q ss_pred CCceEEEeCCCC----CCCH----HHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccce
Q 021177 108 SDYRVLVTGLPS----SASW----QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (316)
Q Consensus 108 ~~~~l~V~nl~~----~~t~----~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~ 179 (316)
+..+|+|.-.+. +.-. .+|.+.|.+||+|..+++..+. +||+|.+.++|.+|++ |||.++.| +
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~G----r 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLN----R 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETT----E
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCC----e
Confidence 355777776652 2333 5799999999999999999875 9999999999999997 99999999 5
Q ss_pred EEEEEeecc
Q 021177 180 YVRVREYDS 188 (316)
Q Consensus 180 ~i~v~~~~~ 188 (316)
.++|..+.+
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 788777654
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=7.4e-07 Score=62.89 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=59.0
Q ss_pred CCCceEEEeCCCCC-----CCH----HHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceeccccc
Q 021177 107 RSDYRVLVTGLPSS-----ASW----QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (316)
Q Consensus 107 ~~~~~l~V~nl~~~-----~t~----~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 177 (316)
++..+|+|.-++.. .-. .+|.+.|..||+|..+++..+. +||+|.+.++|.+|++ |||.++.|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~G--- 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKG--- 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETT---
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCC---
Confidence 34678999887643 222 4689999999999999999884 9999999999999997 99999999
Q ss_pred ceEEEEEee
Q 021177 178 RSYVRVREY 186 (316)
Q Consensus 178 ~~~i~v~~~ 186 (316)
+.++|...
T Consensus 85 -r~L~V~~k 92 (95)
T 1ufw_A 85 -RAVKISGP 92 (95)
T ss_dssp -EEEEEECC
T ss_pred -eEEEEecc
Confidence 57777654
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=3.8e-06 Score=60.01 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=62.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc-----CCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEE
Q 021177 3 SRSSRTLYVGNLPGDTRMREVEDLFYK-----YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~L~~~F~~-----~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v 77 (316)
+.-.++|.|.|||+.+.++.|.-+|++ =|+|..+... .+-|+|+|.+.+.|++.++ -..+.+.|..|.|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-----~~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV 78 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-----GCGGVLTFREPADAERVLA-QADHELHGAQLSL 78 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-----TTEEEEEESSHHHHHHHHT-CSCCBSSSSBCEE
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-----CCcEEEEEcChHHHHHHhc-CCcceecCeEEEE
Confidence 346789999999999999999999987 2699999886 2679999999999999998 3477889999999
Q ss_pred EEcc
Q 021177 78 ELAH 81 (316)
Q Consensus 78 ~~a~ 81 (316)
....
T Consensus 79 ~P~~ 82 (104)
T 2dhx_A 79 RPAP 82 (104)
T ss_dssp EECC
T ss_pred EcCC
Confidence 7744
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.17 E-value=3.9e-06 Score=70.19 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=52.8
Q ss_pred CHHHHHHHHhhcCCeEEEEEeecCCC--------eEEEEEecCHHHHHHHHHHhCCceecccccceEEEEEeec
Q 021177 122 SWQDLKDHMRRAGDVCFSQVFRDRGG--------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (316)
Q Consensus 122 t~~~l~~~f~~~G~v~~~~~~~~~~~--------~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v~~~~ 187 (316)
.+++|.+.|.+||.|..+.+..+..+ |++||+|.+.++|.+|+..|||..+.|+ .|.+....
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr----~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR----KVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS----BCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe----EEEEEEcC
Confidence 46789999999999999999865332 7999999999999999999999999995 66666543
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.05 E-value=3.1e-05 Score=55.57 Aligned_cols=78 Identities=19% Similarity=0.126 Sum_probs=65.0
Q ss_pred CCCCCeEEEcCCCCCC-C----HHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEE
Q 021177 3 SRSSRTLYVGNLPGDT-R----MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (316)
Q Consensus 3 ~~~~~~l~V~nLp~~~-t----~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v 77 (316)
+.-.++|+|+||+..+ + .+.++++|..|+++..+..... =.=.-|.|.++++|.+|-..||+..+.|+.|+|
T Consensus 2 s~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CSCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3457899999998865 3 2567899999999988877532 224789999999999999999999999999999
Q ss_pred EEcccC
Q 021177 78 ELAHGG 83 (316)
Q Consensus 78 ~~a~~~ 83 (316)
.++...
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998843
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.02 E-value=4.1e-05 Score=55.17 Aligned_cols=71 Identities=13% Similarity=0.104 Sum_probs=63.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhc-----CCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRA-----GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~-----G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
...+|-+-|||..++...|+.+...+ |.+..+.+..+-. -|+|+|.+...|.+|.-+++|.+|.| +.++
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~g----r~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQG----KVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETT----EEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecC----eEEE
Confidence 35688999999999999999999999 9999998887765 49999999999999999999999998 4666
Q ss_pred EE
Q 021177 183 VR 184 (316)
Q Consensus 183 v~ 184 (316)
+.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.75 E-value=7.3e-05 Score=52.72 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=44.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhC
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l 65 (316)
...++| ++|+.+...||.++|+.||.|.--+|.. .-|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidD-----TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDD-----TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEET-----TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcC-----CeEEEEecCHHHHHHHHHhc
Confidence 345677 9999999999999999999655444442 37999999999999999865
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.72 E-value=0.00011 Score=51.72 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=54.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccC-----CCCCcEEEEEECCHHHHHHHHHhCCCcccC
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~-----~~~~g~aFVef~~~e~A~~A~~~l~g~~~~ 71 (316)
++|.|.+||+.+|++++.+.++.+.++........ ...-.-|||.|.+.+++..-.+.++|..|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 57999999999999999999999998877766321 122357999999999999999999998874
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.69 E-value=0.00017 Score=53.18 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=58.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCC-ceEEEEEc
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-YRLRVELA 80 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g-~~l~v~~a 80 (316)
.+-|.|-+.|+.. .+.|...|++||+|.+.... ....+-.|.|.+..+|++||. .||+.++| -.|-|.+.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 5678999999885 77888999999999998873 235799999999999999998 89999985 55667664
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.55 E-value=0.0001 Score=52.18 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=43.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCC
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~ 66 (316)
..++| ++|+.+.-.||.++|+.||.|.--+|. -.-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE-----TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhcc
Confidence 35667 999999999999999999944433333 2379999999999999999664
No 389
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.16 E-value=0.0011 Score=46.89 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=51.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEecc---C--CCCCcEEEEEECCHHHHHHHHHhCCCcccC
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---P--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~---~--~~~~g~aFVef~~~e~A~~A~~~l~g~~~~ 71 (316)
-+-+|.|..||+.+|++++.+.++.+-++....... + ...-.-|||.|.+.++...-.+.++|..|.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 355799999999999999998888876654333321 1 112246999999999999999999998874
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.94 E-value=0.011 Score=41.51 Aligned_cols=68 Identities=13% Similarity=0.322 Sum_probs=57.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC------eEEEEEecCHHHHHHHHHHhCCceeccccc
Q 021177 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (316)
Q Consensus 110 ~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~------~~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 177 (316)
.+|.|.+||+.+|++++.+.+.....+........... .-|||.|.+.+++..-.+.++|..+.+...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg 75 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKG 75 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCC
Confidence 47899999999999999999999988777666554321 379999999999999999999999876543
No 391
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.85 E-value=0.0025 Score=47.62 Aligned_cols=76 Identities=20% Similarity=0.275 Sum_probs=56.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEE-ecc---------------CC-CCCcEEEEEECCHHHHHHHHHhCC
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDID-LKI---------------PP-RPPGYAFLEFEDYRDAEDAIRGRD 66 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~-i~~---------------~~-~~~g~aFVef~~~e~A~~A~~~l~ 66 (316)
....-|.|-+.|+.. ...|.+.|++||.|.+-. +.. .. ...++..|.|.++.+|.+|+. .|
T Consensus 5 ~~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 345668888886654 556788999999998722 110 00 125688999999999999998 99
Q ss_pred CcccCCceEEEEEcc
Q 021177 67 GYNFDGYRLRVELAH 81 (316)
Q Consensus 67 g~~~~g~~l~v~~a~ 81 (316)
|..|.|.-|-|.+..
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999988888764
No 392
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.85 E-value=0.0046 Score=44.29 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=59.9
Q ss_pred CceEEEeCCCCCC-C----HHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEEE
Q 021177 109 DYRVLVTGLPSSA-S----WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (316)
Q Consensus 109 ~~~l~V~nl~~~~-t----~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~v 183 (316)
.++|+|.||+.++ . .+.++++|..|+++........-. -..|.|.+.++|.+|...||+..+.|+ ++++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g~----~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGK----EMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTE----ECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecCc----eeEE
Confidence 3589999998765 2 257899999999988876665432 478999999999999999999999994 7788
Q ss_pred Eeec
Q 021177 184 REYD 187 (316)
Q Consensus 184 ~~~~ 187 (316)
....
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 7765
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.73 E-value=0.0078 Score=44.31 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=53.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecc
Q 021177 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (316)
Q Consensus 106 ~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g 174 (316)
......|.|-++|... ...+-..|.+||.|..... ..++....|.|.+..+|++|+ ..||..+.|
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g 85 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKAL-SKDGRIFGE 85 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHH-TTTTCEETT
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHH-HhCCeEecC
Confidence 3446789999998885 6677889999999998776 334459999999999999999 679999986
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.61 E-value=0.014 Score=41.07 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=44.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhC
Q 021177 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168 (316)
Q Consensus 110 ~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~ 168 (316)
..++| ++|.++...||.++|+.||.|..-.+. + .-|||.|.+.+.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid-D---TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-D---TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE-T---TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc-C---CeEEEEecCHHHHHHHHHhcc
Confidence 35555 999999999999999999966544444 3 279999999999999998663
No 395
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.54 E-value=0.028 Score=40.01 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=54.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhh-----cCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCCceecccccceEEE
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRR-----AGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~-----~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~~~i~ 182 (316)
...+|.|.|||..+.++.|+-.|+. -|+|..+.... .-|+|+|.+...|+..+.+ ....+.+ ..+.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~----~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHG----AQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSS----SBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecC----eEEE
Confidence 3579999999999999999999997 25777777765 3699999999999998843 3455555 3566
Q ss_pred EEeec
Q 021177 183 VREYD 187 (316)
Q Consensus 183 v~~~~ 187 (316)
|...-
T Consensus 78 V~P~~ 82 (104)
T 2dhx_A 78 LRPAP 82 (104)
T ss_dssp EEECC
T ss_pred EEcCC
Confidence 65543
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.41 E-value=0.0016 Score=59.74 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=43.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHH
Q 021177 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (316)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~ 63 (316)
..++|+|. .|..+++.+|.+.|++||+|.++.+..+. .-||.|||.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh
Confidence 45789997 79999999999999999999999996532 3699999999999998876
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.07 E-value=0.01 Score=41.93 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=42.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhC
Q 021177 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168 (316)
Q Consensus 111 ~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~ 168 (316)
.++| ++|.++...||.++|+.||.|..-.+. +. -|||.|.+.+.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid-DT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-DT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE-TT---EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEEEEEEc-CC---eEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999944433333 32 69999999999999998764
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.26 E-value=0.046 Score=38.62 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=52.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCC------eEEEEEecCHHHHHHHHHHhCCceecccccc
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~------~~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 178 (316)
..+|.|..||+.+|++++.+.+...-++........... .-|||.|.+.++...-.+..+|..+.+....
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~ 84 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGL 84 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCC
Confidence 458999999999999999888886655433332222111 2689999999999999999999999775443
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.67 E-value=0.054 Score=49.74 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=42.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHH
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIR 165 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~ 165 (316)
...|+|. .|..+++.+|.+.|.+||.|..+.+..+.. .||.|||.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-eEEEEEeCCHHHHHHHHh
Confidence 4589997 699999999999999999999998887543 699999999999887764
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.49 E-value=0.24 Score=46.21 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=44.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCC
Q 021177 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (316)
Q Consensus 7 ~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~ 66 (316)
..++|+ +|+.+...+|.++|+.||.|.-.++- ...|||.|.+.+.|..++..+.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wid-----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECS-----SSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEc-----CCeEEEEECCHHHHHHHHHHHH
Confidence 467776 99999999999999999976544333 3479999999999999998775
No 401
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.21 E-value=0.36 Score=35.96 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=47.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEE-EEe--------------ecC---CCeEEEEEecCHHHHHHHHHHhCCc
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVF--------------RDR---GGMTGIVDYTSYDDMKYAIRKLDRS 170 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~-~~~--------------~~~---~~~~afV~f~~~~~A~~A~~~l~g~ 170 (316)
...|.|-+.|+..+. .+-+.|++||.|..- ... .-+ ++....|+|.+..+|.+|+ ..||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 457888888666554 456789999998762 111 111 2347899999999999999 78999
Q ss_pred eeccc
Q 021177 171 EFRNA 175 (316)
Q Consensus 171 ~~~g~ 175 (316)
.+.|.
T Consensus 85 ii~G~ 89 (132)
T 3p3d_A 85 VFNGV 89 (132)
T ss_dssp EETTE
T ss_pred EeCcE
Confidence 99884
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=82.60 E-value=3.9 Score=26.93 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=43.6
Q ss_pred eEEEcCC-CCCCCHHHHHHHhhcCC-----CeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEEcc
Q 021177 8 TLYVGNL-PGDTRMREVEDLFYKYG-----PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (316)
Q Consensus 8 ~l~V~nL-p~~~t~~~L~~~F~~~G-----~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 81 (316)
+|||..= -..++..+|..++..-+ .|-.|.+. ..|.||+-.. +.|..++..|++..+.|+.+.|+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4555311 23477778888877655 56667775 4589999854 55788888899999999999988754
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=75.32 E-value=10 Score=35.13 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=43.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHhCC
Q 021177 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 169 (316)
Q Consensus 109 ~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g 169 (316)
...++|+ +|..+...+|.+.|+.||.+. +..+.+ ..|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~widd---t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISWIDD---TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEECSS---SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEEEcC---CeEEEEECCHHHHHHHHHHHHh
Confidence 3466665 888999999999999999654 333333 2799999999999999988853
No 404
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=63.18 E-value=1.3 Score=33.82 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=20.7
Q ss_pred HHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECC
Q 021177 21 REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFED 54 (316)
Q Consensus 21 ~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~ 54 (316)
+|+.++|...|.|+.+... +|||||+-.+
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~~ 30 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMTA 30 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeCc
Confidence 5667788888999987664 8999999863
No 405
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=50.37 E-value=57 Score=22.23 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=27.0
Q ss_pred CeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCC
Q 021177 32 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (316)
Q Consensus 32 ~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g 67 (316)
.|..+.++. .-+||.||++...++...++..+.|
T Consensus 39 ~i~~v~vP~--~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASE--SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECT--TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEec--ccCCEEEEEEecchhHHHHHHCCCC
Confidence 466666653 3589999999999999999987766
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=49.47 E-value=59 Score=22.11 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=53.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCceEEEEE
Q 021177 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (316)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~l~v~~ 79 (316)
..++-|.|-|||..+-..++.-.....|---.+... -|-|.|.|.+.++...|++.|-+. +..+|.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 456788999999999999988888888866666665 578999999999999998765332 344566655
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=48.52 E-value=24 Score=27.42 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=37.2
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--hcCCCeeEEEeccCCCCCcEEEEEECCHHHH
Q 021177 8 TLYVGNLPG-D--------TRMREVEDLF--YKYGPIVDIDLKIPPRPPGYAFLEFEDYRDA 58 (316)
Q Consensus 8 ~l~V~nLp~-~--------~t~~~L~~~F--~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A 58 (316)
++.|-|+|. . ....+|.+.| ..|.+++-..+....-..|+|.|+|...-..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHH
Confidence 466788887 2 4557899977 9998888666654444578999999976543
No 408
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.15 E-value=68 Score=21.72 Aligned_cols=55 Identities=9% Similarity=0.130 Sum_probs=38.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhcC-C-CeeEEEeccCCCCCcEEEEEECCHHHHHHHHH
Q 021177 9 LYVGNLPGDTRMREVEDLFYKY-G-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (316)
Q Consensus 9 l~V~nLp~~~t~~~L~~~F~~~-G-~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~ 63 (316)
-|+-.+...++..||++.++.+ | +|..+..........-|||.+....+|.....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 4555678899999999988874 4 56666554332233469999998888776544
No 409
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=33.08 E-value=18 Score=23.77 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=12.6
Q ss_pred CCeeEEEeccCCCCCcEEEEEECC
Q 021177 31 GPIVDIDLKIPPRPPGYAFLEFED 54 (316)
Q Consensus 31 G~V~~i~i~~~~~~~g~aFVef~~ 54 (316)
|.|+.+.-. +|||||+=.+
T Consensus 5 G~Vkwfn~~-----KGfGFI~~~d 23 (74)
T 2k5n_A 5 GTITTWFKD-----KGFGFIKDEN 23 (74)
T ss_dssp EEEEEEETT-----TTEEEEEESS
T ss_pred eEEEEEECC-----CCeEEEecCC
Confidence 555554432 8999998764
No 410
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.64 E-value=25 Score=22.51 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=14.3
Q ss_pred CCeeEEEeccCCCCCcEEEEEECCHH
Q 021177 31 GPIVDIDLKIPPRPPGYAFLEFEDYR 56 (316)
Q Consensus 31 G~V~~i~i~~~~~~~g~aFVef~~~e 56 (316)
|.|..|... ++.|||.|+|-.
T Consensus 28 GtV~kV~~~-----~~~ClV~FeD~s 48 (68)
T 2e5p_A 28 GTIKKVDSA-----REVCLVQFEDDS 48 (68)
T ss_dssp EEEEEEETT-----TTEEEEEETTTE
T ss_pred eEEEEEecC-----CcEEEEEEccCC
Confidence 556655433 678999998753
No 411
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=30.98 E-value=21 Score=23.50 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=8.9
Q ss_pred CcEEEEEECCH
Q 021177 45 PGYAFLEFEDY 55 (316)
Q Consensus 45 ~g~aFVef~~~ 55 (316)
+|||||+-.+-
T Consensus 12 KGfGFI~~~dG 22 (74)
T 2kcm_A 12 KKYGFIQGDDG 22 (74)
T ss_dssp TTEEEEEETTS
T ss_pred CCEEEEecCCC
Confidence 89999987653
No 412
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=30.74 E-value=73 Score=22.47 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=27.7
Q ss_pred CeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCc
Q 021177 32 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (316)
Q Consensus 32 ~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~ 68 (316)
.|..+..+ ...+||-|||=.++.++..|++.+.+.
T Consensus 40 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAP--EHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEEC--TTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEec--CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 46666554 346999999999999999999877654
No 413
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=29.67 E-value=1.1e+02 Score=20.59 Aligned_cols=54 Identities=11% Similarity=0.074 Sum_probs=37.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhcC-C-CeeEEEeccCCCCCcEEEEEECCHHHHHHHH
Q 021177 9 LYVGNLPGDTRMREVEDLFYKY-G-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (316)
Q Consensus 9 l~V~nLp~~~t~~~L~~~F~~~-G-~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~ 62 (316)
-|+-.+...+|..||++.++.+ | +|..|.-........-|||.+....+|....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHH
Confidence 4555678899999999988764 5 6666655433322345999998877765544
No 414
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=29.20 E-value=23 Score=22.66 Aligned_cols=19 Identities=16% Similarity=0.386 Sum_probs=12.2
Q ss_pred CCeeEEEeccCCCCCcEEEEEECC
Q 021177 31 GPIVDIDLKIPPRPPGYAFLEFED 54 (316)
Q Consensus 31 G~V~~i~i~~~~~~~g~aFVef~~ 54 (316)
|.|+...-. +|||||+=.+
T Consensus 4 G~Vk~fn~~-----kGfGFI~~~~ 22 (67)
T 3cam_A 4 GIVKWFNDA-----KGFGFITPDE 22 (67)
T ss_dssp EEEEEEETT-----TTEEEEEETT
T ss_pred EEEEEEECC-----CCeEEEecCC
Confidence 555554332 8999998543
No 415
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=29.14 E-value=23 Score=22.52 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=12.3
Q ss_pred CCeeEEEeccCCCCCcEEEEEECC
Q 021177 31 GPIVDIDLKIPPRPPGYAFLEFED 54 (316)
Q Consensus 31 G~V~~i~i~~~~~~~g~aFVef~~ 54 (316)
|.|+.+.-. +|||||+=.+
T Consensus 4 G~Vk~fn~~-----kGfGFI~~~~ 22 (66)
T 1c9o_A 4 GKVKWFNNE-----KGYGFIEVEG 22 (66)
T ss_dssp EEEEEEETT-----TTEEEEEETT
T ss_pred eEEEEEECC-----CCeEEEecCC
Confidence 555554432 8999998653
No 416
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=28.94 E-value=31 Score=22.11 Aligned_cols=11 Identities=36% Similarity=0.531 Sum_probs=9.4
Q ss_pred CcEEEEEECCH
Q 021177 45 PGYAFLEFEDY 55 (316)
Q Consensus 45 ~g~aFVef~~~ 55 (316)
+|.|+|.|.|-
T Consensus 41 ~gtC~V~F~D~ 51 (66)
T 2eqj_A 41 KQSCFIIFEDS 51 (66)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 78999999874
No 417
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=27.88 E-value=52 Score=22.97 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=22.0
Q ss_pred CCHHHHHHHhhcCCCeeEEEeccCCCCCcEEE
Q 021177 18 TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAF 49 (316)
Q Consensus 18 ~t~~~L~~~F~~~G~V~~i~i~~~~~~~g~aF 49 (316)
.+++.|.++|+..|.|..-.|. .||||
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF-----Gg~~l 30 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF-----GGFGL 30 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET-----TEEEE
T ss_pred hHHHHHHHHHhccCCceEeecc-----CcEEE
Confidence 4678899999999999998886 45555
No 418
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=27.57 E-value=26 Score=22.89 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=12.2
Q ss_pred CCeeEEEeccCCCCCcEEEEEECC
Q 021177 31 GPIVDIDLKIPPRPPGYAFLEFED 54 (316)
Q Consensus 31 G~V~~i~i~~~~~~~g~aFVef~~ 54 (316)
|.|+.+.-. +|||||+-.+
T Consensus 4 G~Vk~fn~~-----kGfGFI~~~~ 22 (73)
T 3a0j_A 4 GRVKWFNAE-----KGYGFIEREG 22 (73)
T ss_dssp EEEEEEETT-----TTEEEEECTT
T ss_pred EEEEEEECC-----CCEEEEecCC
Confidence 555554432 8999998543
No 419
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=26.67 E-value=28 Score=22.19 Aligned_cols=10 Identities=30% Similarity=0.870 Sum_probs=8.3
Q ss_pred CcEEEEEECC
Q 021177 45 PGYAFLEFED 54 (316)
Q Consensus 45 ~g~aFVef~~ 54 (316)
+|||||+-.+
T Consensus 12 kGfGFI~~~~ 21 (66)
T 1g6p_A 12 KGYGFITKDE 21 (66)
T ss_dssp TTEEEEEETT
T ss_pred CCEEEEecCC
Confidence 8999998654
No 420
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=24.66 E-value=1.7e+02 Score=19.86 Aligned_cols=56 Identities=14% Similarity=0.323 Sum_probs=46.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCeEEEEEecCHHHHHHHHHHh
Q 021177 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167 (316)
Q Consensus 108 ~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l 167 (316)
..+-+.|-|+|..+-..++--...-.|---+|..... .|+|.|.+.++..-|+.++
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyidg----qamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG----QAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS----CEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC----eeEEEecCChHHHHHHHHH
Confidence 3567888999999988888777788888778877754 5999999999999999887
No 421
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=24.63 E-value=40 Score=22.17 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=14.3
Q ss_pred CCeeEEEeccCCCCCcEEEEEECCHH
Q 021177 31 GPIVDIDLKIPPRPPGYAFLEFEDYR 56 (316)
Q Consensus 31 G~V~~i~i~~~~~~~g~aFVef~~~e 56 (316)
|.|..|... ++.|+|.|.|..
T Consensus 45 GTI~kV~~~-----~e~ClV~F~D~S 65 (79)
T 2m0o_A 45 GTIKKVDSA-----REVCLVQFEDDS 65 (79)
T ss_dssp EEEEEEETT-----TTEEEEEETTSC
T ss_pred EEEEEeccC-----CCEEEEEEcCCC
Confidence 555555433 678999998754
No 422
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.42 E-value=31 Score=22.86 Aligned_cols=9 Identities=33% Similarity=0.829 Sum_probs=7.7
Q ss_pred CcEEEEEEC
Q 021177 45 PGYAFLEFE 53 (316)
Q Consensus 45 ~g~aFVef~ 53 (316)
+|||||+=.
T Consensus 20 kGfGFI~~~ 28 (79)
T 1h95_A 20 NGYGFINRN 28 (79)
T ss_dssp TTEEEEEEG
T ss_pred CCcEEEecC
Confidence 899999864
No 423
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=23.93 E-value=32 Score=23.56 Aligned_cols=8 Identities=25% Similarity=0.891 Sum_probs=7.0
Q ss_pred CcEEEEEE
Q 021177 45 PGYAFLEF 52 (316)
Q Consensus 45 ~g~aFVef 52 (316)
+||+||+-
T Consensus 20 KGfGFI~~ 27 (90)
T 3ulj_A 20 MGFGFISM 27 (90)
T ss_dssp TTEEEEEE
T ss_pred CCeEEeEe
Confidence 89999974
No 424
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=23.67 E-value=34 Score=22.16 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=13.2
Q ss_pred CCCeeEEEeccCCCCCcEEEEEECC
Q 021177 30 YGPIVDIDLKIPPRPPGYAFLEFED 54 (316)
Q Consensus 30 ~G~V~~i~i~~~~~~~g~aFVef~~ 54 (316)
.|.|+.+.-. +|||||+-.+
T Consensus 7 ~G~Vk~fn~~-----kGfGFI~~~~ 26 (71)
T 3i2z_B 7 KGNVKWFNES-----KGFGFITPED 26 (71)
T ss_dssp EEEEEEEETT-----TTEEEEEETT
T ss_pred cEEEEEEECC-----CCcEEEecCC
Confidence 3666654332 8999998754
No 425
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=22.84 E-value=64 Score=26.96 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=26.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeeEEEe
Q 021177 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (316)
Q Consensus 6 ~~~l~V~nLp~~~t~~~L~~~F~~~G~V~~i~i 38 (316)
..-+.|+|||++++..-|.+++.. +.+..+.+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 346789999999999999999988 66665444
No 426
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=22.11 E-value=2.2e+02 Score=21.99 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=32.3
Q ss_pred ceEEEeCCCCC---------CCHHHHHHHH--hhcCCeEEEEEeecCCC--eEEEEEecCHH
Q 021177 110 YRVLVTGLPSS---------ASWQDLKDHM--RRAGDVCFSQVFRDRGG--MTGIVDYTSYD 158 (316)
Q Consensus 110 ~~l~V~nl~~~---------~t~~~l~~~f--~~~G~v~~~~~~~~~~~--~~afV~f~~~~ 158 (316)
..+.|.|+|.. ....+|.+.| ..|..+....+ .+..+ +++.|+|..--
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l-~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPL-WNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEE-ECSSBEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEec-ccCCCCceeEEEEecCCh
Confidence 36677777762 3457899977 88988774444 44333 68999998643
No 427
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=21.95 E-value=97 Score=27.73 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=41.2
Q ss_pred EEEcCCCCCCC----HHHHHHHhhcCCCeeEEEeccCCCCCcEEEEEECCHHHHHHHHHhCCCcccCCce
Q 021177 9 LYVGNLPGDTR----MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (316)
Q Consensus 9 l~V~nLp~~~t----~~~L~~~F~~~G~V~~i~i~~~~~~~g~aFVef~~~e~A~~A~~~l~g~~~~g~~ 74 (316)
-+||||+.-.. ...+.++..+||+|..+++- +.-+|...+++.|+.++. -++..+.+++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 46888764321 35677888899999988873 345677889999999886 3445555443
No 428
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=21.26 E-value=45 Score=25.18 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=12.7
Q ss_pred CCeeEEEeccCCCCCcEEEEEECC
Q 021177 31 GPIVDIDLKIPPRPPGYAFLEFED 54 (316)
Q Consensus 31 G~V~~i~i~~~~~~~g~aFVef~~ 54 (316)
|.|+.+.- .+|||||+-.+
T Consensus 65 GtVKwFn~-----~KGfGFI~~dd 83 (147)
T 3aqq_A 65 GVCKCFCR-----SKGHGFITPAD 83 (147)
T ss_dssp EEEEEEET-----TTTEEEEEESS
T ss_pred eEEEEEeC-----CCCeEEeccCC
Confidence 55554433 28999999864
No 429
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=20.94 E-value=1.4e+02 Score=21.23 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=19.7
Q ss_pred CCcEEEEEECCHH-----HHHHHHHhCCC
Q 021177 44 PPGYAFLEFEDYR-----DAEDAIRGRDG 67 (316)
Q Consensus 44 ~~g~aFVef~~~e-----~A~~A~~~l~g 67 (316)
-.||.||++.-.+ ++...+....|
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~g 89 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPG 89 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTT
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCC
Confidence 5799999998777 77888887766
Done!