Query 021178
Match_columns 316
No_of_seqs 187 out of 751
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 13:54:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 9.8E-18 3.3E-22 126.9 5.5 60 171-237 2-61 (63)
2 4gat_A Nitrogen regulatory pro 99.6 1.5E-16 5.3E-21 121.2 4.2 55 173-234 6-60 (66)
3 2kae_A GATA-type transcription 99.5 1.4E-15 4.8E-20 117.5 1.4 42 172-213 4-45 (71)
4 2vut_I AREA, nitrogen regulato 99.5 5.3E-15 1.8E-19 104.4 3.3 36 177-213 2-37 (43)
5 1gnf_A Transcription factor GA 99.5 1.2E-14 4E-19 104.0 3.7 38 175-213 3-40 (46)
6 4hc9_A Trans-acting T-cell-spe 99.5 2.5E-14 8.5E-19 118.5 5.0 57 173-236 56-112 (115)
7 4hc9_A Trans-acting T-cell-spe 99.1 1.7E-11 5.8E-16 101.6 4.0 38 174-212 3-40 (115)
8 1dl6_A Transcription factor II 65.8 2.7 9.3E-05 30.4 1.8 32 174-208 9-40 (58)
9 3cw2_K Translation initiation 63.7 2.9 9.8E-05 35.5 1.8 30 177-207 104-133 (139)
10 2d74_B Translation initiation 59.8 3 0.0001 35.9 1.2 29 177-206 105-133 (148)
11 1nee_A EIF-2-beta, probable tr 55.6 3 0.0001 35.3 0.6 29 177-206 103-131 (138)
12 3k7a_M Transcription initiatio 55.3 4.2 0.00014 38.0 1.6 32 175-207 20-51 (345)
13 1k81_A EIF-2-beta, probable tr 54.3 1.4 5E-05 29.4 -1.3 28 178-206 2-29 (36)
14 2g2k_A EIF-5, eukaryotic trans 49.6 3 0.0001 36.7 -0.4 31 177-207 97-128 (170)
15 2e9h_A EIF-5, eukaryotic trans 44.4 4.1 0.00014 35.4 -0.4 30 177-206 104-134 (157)
16 1pft_A TFIIB, PFTFIIBN; N-term 40.4 6.2 0.00021 27.1 0.1 30 176-208 5-34 (50)
17 2iqj_A Stromal membrane-associ 39.9 9.9 0.00034 31.9 1.3 33 176-210 27-59 (134)
18 2owa_A Arfgap-like finger doma 39.4 10 0.00035 32.1 1.3 33 176-210 36-68 (138)
19 2b0o_E UPLC1; arfgap, structur 39.3 9.8 0.00034 33.8 1.3 29 176-206 42-70 (301)
20 3cng_A Nudix hydrolase; struct 38.2 9.3 0.00032 31.6 0.9 32 175-206 2-33 (189)
21 2crr_A Stromal membrane-associ 38.0 12 0.00042 31.5 1.6 33 176-210 29-61 (141)
22 4bbr_M Transcription initiatio 33.4 7.6 0.00026 36.6 -0.5 31 176-207 21-51 (345)
23 2olm_A Nucleoporin-like protei 31.4 17 0.00059 30.6 1.5 31 176-208 25-55 (140)
24 2crw_A ARF GAP 3, ADP-ribosyla 31.3 18 0.0006 31.0 1.5 33 176-210 29-61 (149)
25 2p57_A GTPase-activating prote 30.6 13 0.00043 31.9 0.5 33 176-210 37-69 (144)
26 3dwd_A ADP-ribosylation factor 30.6 17 0.00058 31.3 1.3 33 176-210 38-70 (147)
27 2qiy_C Ubiquitin carboxyl-term 30.2 16 0.00056 26.3 0.9 13 41-53 15-28 (48)
28 3k1f_M Transcription initiatio 29.0 14 0.00047 33.4 0.4 34 174-208 19-52 (197)
29 1qyp_A RNA polymerase II; tran 28.2 6.3 0.00022 27.9 -1.5 33 176-208 15-53 (57)
30 1pqv_S STP-alpha, transcriptio 26.7 13 0.00043 34.7 -0.2 35 175-209 267-307 (309)
31 3sub_A ADP-ribosylation factor 23.2 28 0.00096 30.4 1.3 32 176-209 22-53 (163)
32 2yrc_A Protein transport prote 21.8 23 0.00079 25.8 0.4 38 169-206 2-41 (59)
33 3po3_S Transcription elongatio 21.6 17 0.00059 31.5 -0.3 35 175-209 136-176 (178)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.70 E-value=9.8e-18 Score=126.93 Aligned_cols=60 Identities=30% Similarity=0.582 Sum_probs=48.9
Q ss_pred CCCCCCcccccCCCCCCCccccCCCCCCccchhHhHHHHhhhhhhHHHhhcCcccccCCCccccccc
Q 021178 171 NSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAESGTTTAKDNSSFSKIKL 237 (316)
Q Consensus 171 ~~~~~~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~~k~~~aa~~ng~~~kke~~qstR~K~ 237 (316)
++......|++|++++||+||+||+|+ +|||||||||++++. .++..+.+++++++++|+
T Consensus 2 ~~~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~------~RP~~~~~~~i~~R~Rk~ 61 (63)
T 3dfx_A 2 AARRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI------NRPLTMKKEGIQTRNRKM 61 (63)
T ss_dssp CCCCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS------CCCGGGCCSSCCCCC---
T ss_pred CCCCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC------CCCcCcCCCccccccCCC
Confidence 346678899999999999999999996 999999999988754 367788888887766554
No 2
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.62 E-value=1.5e-16 Score=121.19 Aligned_cols=55 Identities=35% Similarity=0.639 Sum_probs=45.3
Q ss_pred CCCCcccccCCCCCCCccccCCCCCCccchhHhHHHHhhhhhhHHHhhcCcccccCCCcccc
Q 021178 173 NNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAESGTTTAKDNSSFSK 234 (316)
Q Consensus 173 ~~~~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~~k~~~aa~~ng~~~kke~~qstR 234 (316)
.+..+.|++|++++||+||+||+|. +|||||||||+++.. .++..++++.|+.++
T Consensus 6 ~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~------~RP~~~k~~~ik~R~ 60 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV------VRPLSLKTDVIKKRN 60 (66)
T ss_dssp SSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCS------CCCGGGCCSCCCCCC
T ss_pred CCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCC------CCchhhccccccccc
Confidence 4678999999999999999999995 999999999988654 366777776665443
No 3
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.52 E-value=1.4e-15 Score=117.50 Aligned_cols=42 Identities=40% Similarity=0.570 Sum_probs=32.3
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCCccchhHhHHHHhhhh
Q 021178 172 SNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK 213 (316)
Q Consensus 172 ~~~~~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~~k 213 (316)
.......|+||+|++||+||+|+.+..+|||||||||+++..
T Consensus 4 ~~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 4 MNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNK 45 (71)
T ss_dssp ----CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHS
T ss_pred CCCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCC
Confidence 356788999999999999999544334899999999988754
No 4
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.51 E-value=5.3e-15 Score=104.41 Aligned_cols=36 Identities=47% Similarity=1.024 Sum_probs=33.0
Q ss_pred cccccCCCCCCCccccCCCCCCccchhHhHHHHhhhh
Q 021178 177 RICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK 213 (316)
Q Consensus 177 ~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~~k 213 (316)
+.|++|++++||+||+||+|. +|||||||||++++.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCC
Confidence 579999999999999999996 999999999988754
No 5
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.49 E-value=1.2e-14 Score=104.00 Aligned_cols=38 Identities=42% Similarity=0.957 Sum_probs=34.3
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHhHHHHhhhh
Q 021178 175 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK 213 (316)
Q Consensus 175 ~~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~~k 213 (316)
..+.|++|++++||+||+||+|. +|||||||||+++..
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQ 40 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCS
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCC
Confidence 46789999999999999999995 999999999988643
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.47 E-value=2.5e-14 Score=118.54 Aligned_cols=57 Identities=32% Similarity=0.592 Sum_probs=47.3
Q ss_pred CCCCcccccCCCCCCCccccCCCCCCccchhHhHHHHhhhhhhHHHhhcCcccccCCCcccccc
Q 021178 173 NNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAESGTTTAKDNSSFSKIK 236 (316)
Q Consensus 173 ~~~~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~~k~~~aa~~ng~~~kke~~qstR~K 236 (316)
......|++|+|+.||+||+||+| ++|||||||||+++... ++..++++.|+.+++|
T Consensus 56 ~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~------rp~~~~~~~i~~r~r~ 112 (115)
T 4hc9_A 56 RRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNIN------RPLTMKKEGIQTRNRK 112 (115)
T ss_dssp CCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC------CCGGGCCSSCCCCC--
T ss_pred ccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCC------CCccccccchhhcccc
Confidence 456789999999999999999999 89999999999887543 6788888877765544
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.15 E-value=1.7e-11 Score=101.59 Aligned_cols=38 Identities=42% Similarity=0.937 Sum_probs=32.5
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchhHhHHHHhhh
Q 021178 174 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 212 (316)
Q Consensus 174 ~~~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~~ 212 (316)
...+.|+||++++||+||+|++| .+|||||||||+.+.
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G 40 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNG 40 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHS
T ss_pred CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhcc
Confidence 35789999999999999999999 799999999997653
No 8
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=65.82 E-value=2.7 Score=30.44 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=22.9
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchhHhHHH
Q 021178 174 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 208 (316)
Q Consensus 174 ~~~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~ 208 (316)
.....|.+|+.+. +-.....| ..+|..||+-+
T Consensus 9 l~~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl 40 (58)
T 1dl6_A 9 LPRVTCPNHPDAI--LVEDYRAG-DMICPECGLVV 40 (58)
T ss_dssp CSCCSBTTBSSSC--CEECSSSC-CEECTTTCCEE
T ss_pred cccccCcCCCCCc--eeEeCCCC-eEEeCCCCCEE
Confidence 3455799998755 44445567 68999999854
No 9
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=63.72 E-value=2.9 Score=35.53 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=20.3
Q ss_pred cccccCCCCCCCccccCCCCCCccchhHhHH
Q 021178 177 RICSDCNTTTTPLWRSGPRGPKSLCNACGIR 207 (316)
Q Consensus 177 ~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~ 207 (316)
-.|..|+...|-+-+.+..- -.-|+|||-.
T Consensus 104 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSW-YIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTT-TSSCCC----
T ss_pred eECCCCCCcCcEEEEeCCeE-EEEecCCCCC
Confidence 57999999999998865333 2459999963
No 10
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=59.75 E-value=3 Score=35.87 Aligned_cols=29 Identities=28% Similarity=0.565 Sum_probs=22.5
Q ss_pred cccccCCCCCCCccccCCCCCCccchhHhH
Q 021178 177 RICSDCNTTTTPLWRSGPRGPKSLCNACGI 206 (316)
Q Consensus 177 ~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL 206 (316)
..|..|+...|-+-+.+..- -.-|+|||-
T Consensus 105 VlC~~C~sPdT~L~k~~r~~-~l~C~ACGa 133 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFH-FLKCEACGA 133 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSB-CCCCSSSCC
T ss_pred EECCCCCCcCcEEEEeCCEE-EEEecCCCC
Confidence 57999999999998765322 235999996
No 11
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=55.61 E-value=3 Score=35.34 Aligned_cols=29 Identities=38% Similarity=0.784 Sum_probs=22.4
Q ss_pred cccccCCCCCCCccccCCCCCCccchhHhH
Q 021178 177 RICSDCNTTTTPLWRSGPRGPKSLCNACGI 206 (316)
Q Consensus 177 ~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL 206 (316)
-.|..|+...|-+-+.+..- -.-|+|||-
T Consensus 103 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRIS-LLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTT-EEECSTTSC
T ss_pred EECCCCCCcCcEEEEcCCeE-EEEccCCCC
Confidence 57999999999998865332 234999985
No 12
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=55.34 E-value=4.2 Score=37.98 Aligned_cols=32 Identities=22% Similarity=0.598 Sum_probs=21.3
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHhHH
Q 021178 175 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIR 207 (316)
Q Consensus 175 ~~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~ 207 (316)
....|.+|+.+.+-+-..-..| ..+|..||+-
T Consensus 20 ~~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~V 51 (345)
T 3k7a_M 20 IVLTCPECKVYPPKIVERFSEG-DVVCALCGLV 51 (345)
T ss_dssp CCCCCSTTCCSCCCCCCCSSSC-SCCCSSSCCC
T ss_pred CCCcCcCCCCCCCceEEECCCC-CEecCCCCeE
Confidence 4557999988743232344567 6889999974
No 13
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=54.26 E-value=1.4 Score=29.36 Aligned_cols=28 Identities=32% Similarity=0.725 Sum_probs=20.8
Q ss_pred ccccCCCCCCCccccCCCCCCccchhHhH
Q 021178 178 ICSDCNTTTTPLWRSGPRGPKSLCNACGI 206 (316)
Q Consensus 178 ~CsnC~Tt~TPlWRrGP~G~~~LCNACGL 206 (316)
.|..|+..+|-+=+++..- -.-|+|||-
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCC
Confidence 5999999999998854222 123999995
No 14
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=49.58 E-value=3 Score=36.65 Aligned_cols=31 Identities=29% Similarity=0.702 Sum_probs=22.4
Q ss_pred cccccCCCCCCCccccCCCCCC-ccchhHhHH
Q 021178 177 RICSDCNTTTTPLWRSGPRGPK-SLCNACGIR 207 (316)
Q Consensus 177 ~~CsnC~Tt~TPlWRrGP~G~~-~LCNACGL~ 207 (316)
..|..|+...|-+-+....+-- .-|+|||-.
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYR 128 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCc
Confidence 4699999999999884322311 249999964
No 15
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.35 E-value=4.1 Score=35.38 Aligned_cols=30 Identities=27% Similarity=0.685 Sum_probs=21.5
Q ss_pred cccccCCCCCCCccccCCCCC-CccchhHhH
Q 021178 177 RICSDCNTTTTPLWRSGPRGP-KSLCNACGI 206 (316)
Q Consensus 177 ~~CsnC~Tt~TPlWRrGP~G~-~~LCNACGL 206 (316)
..|..|+..+|-+-+....+- -.-|+|||-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa 134 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGY 134 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCC
Confidence 569999999999986322221 124999996
No 16
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=40.42 E-value=6.2 Score=27.05 Aligned_cols=30 Identities=27% Similarity=0.728 Sum_probs=20.2
Q ss_pred CcccccCCCCCCCccccCCCCCCccchhHhHHH
Q 021178 176 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 208 (316)
Q Consensus 176 ~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~ 208 (316)
...|-+|+.+ ++-.....| ..+|..||+-|
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG-EIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT-EEEESSSCCBC
T ss_pred cEeCcCCCCc--ceEEcCCCC-eEECcccCCcc
Confidence 4569999773 443333445 67899999855
No 17
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=39.89 E-value=9.9 Score=31.85 Aligned_cols=33 Identities=30% Similarity=0.709 Sum_probs=26.5
Q ss_pred CcccccCCCCCCCccccCCCCCCccchhHhHHHHh
Q 021178 176 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 210 (316)
Q Consensus 176 ~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk 210 (316)
-..|++|+... |.|-.-.-| -.+|-.|.-..+.
T Consensus 27 N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~ 59 (134)
T 2iqj_A 27 NKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRN 59 (134)
T ss_dssp GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred CCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhc
Confidence 46799999874 999999999 7899999654433
No 18
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=39.35 E-value=10 Score=32.06 Aligned_cols=33 Identities=33% Similarity=0.694 Sum_probs=26.4
Q ss_pred CcccccCCCCCCCccccCCCCCCccchhHhHHHHh
Q 021178 176 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 210 (316)
Q Consensus 176 ~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk 210 (316)
-..|++|+... |.|-.-.-| -.+|-.|.-..|.
T Consensus 36 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~ 68 (138)
T 2owa_A 36 NRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRK 68 (138)
T ss_dssp GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHT
T ss_pred CCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhC
Confidence 45799999865 999999999 7899999654433
No 19
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=39.34 E-value=9.8 Score=33.78 Aligned_cols=29 Identities=31% Similarity=0.676 Sum_probs=24.6
Q ss_pred CcccccCCCCCCCccccCCCCCCccchhHhH
Q 021178 176 VRICSDCNTTTTPLWRSGPRGPKSLCNACGI 206 (316)
Q Consensus 176 ~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL 206 (316)
-..|.+|+... |.|-.-.-| ..+|-.|.-
T Consensus 42 n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~ 70 (301)
T 2b0o_E 42 NSQCCDCGAAD-PTWLSTNLG-VLTCIQCSG 70 (301)
T ss_dssp TTBCTTTCCBS-CCEEETTTT-EEECHHHHH
T ss_pred CCcCCCCCCCC-CCeEEeecC-eEEcHHHHH
Confidence 45799999965 999999999 789999943
No 20
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=38.20 E-value=9.3 Score=31.57 Aligned_cols=32 Identities=22% Similarity=0.572 Sum_probs=25.8
Q ss_pred CCcccccCCCCCCCccccCCCCCCccchhHhH
Q 021178 175 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGI 206 (316)
Q Consensus 175 ~~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL 206 (316)
..+.|..|++..+.....|..+....|-.||.
T Consensus 2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 2 HMKFCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp -CCBCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred CcccCchhCCccccccccCCCCcceECCCCCC
Confidence 45789999999988777777776678999994
No 21
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.95 E-value=12 Score=31.50 Aligned_cols=33 Identities=30% Similarity=0.685 Sum_probs=26.1
Q ss_pred CcccccCCCCCCCccccCCCCCCccchhHhHHHHh
Q 021178 176 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 210 (316)
Q Consensus 176 ~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk 210 (316)
-..|++|+.. -|.|-.-.-| -.+|-.|.-..+.
T Consensus 29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~ 61 (141)
T 2crr_A 29 NKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRN 61 (141)
T ss_dssp GSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHH
T ss_pred CCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhc
Confidence 3579999986 5999998889 7899999654433
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=33.45 E-value=7.6 Score=36.57 Aligned_cols=31 Identities=23% Similarity=0.624 Sum_probs=19.6
Q ss_pred CcccccCCCCCCCccccCCCCCCccchhHhHH
Q 021178 176 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIR 207 (316)
Q Consensus 176 ~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~ 207 (316)
...|-+|+...+-+--+-..| ..+|..||+-
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G-~~vC~~CGlV 51 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLV 51 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGT-EEEETTTCBE
T ss_pred CCcCCCCCCCCCceeEECCCC-cEEeCCCCCC
Confidence 446999987433333334556 6889999873
No 23
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=31.42 E-value=17 Score=30.58 Aligned_cols=31 Identities=26% Similarity=0.587 Sum_probs=25.4
Q ss_pred CcccccCCCCCCCccccCCCCCCccchhHhHHH
Q 021178 176 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 208 (316)
Q Consensus 176 ~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~ 208 (316)
-..|++|+.. -|.|-.-.-| -.+|-.|.-..
T Consensus 25 N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiH 55 (140)
T 2olm_A 25 NRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSL 55 (140)
T ss_dssp GGSCTTTCSS-CCCEEETTTT-EEECHHHHHHH
T ss_pred CCcCCCCCCC-CCCceeeccC-EEEchhccchh
Confidence 4679999986 6999999889 78999996533
No 24
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.26 E-value=18 Score=31.03 Aligned_cols=33 Identities=33% Similarity=0.736 Sum_probs=26.2
Q ss_pred CcccccCCCCCCCccccCCCCCCccchhHhHHHHh
Q 021178 176 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 210 (316)
Q Consensus 176 ~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk 210 (316)
-..|++|+.. -|.|-.-.-| -.+|-.|.-..|.
T Consensus 29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~ 61 (149)
T 2crw_A 29 NKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRS 61 (149)
T ss_dssp TSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHH
T ss_pred CCcCCCCcCC-CCCcEEeccC-EEEchhcchhhcc
Confidence 4579999975 6999999889 7899999654443
No 25
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=30.62 E-value=13 Score=31.88 Aligned_cols=33 Identities=33% Similarity=0.679 Sum_probs=26.2
Q ss_pred CcccccCCCCCCCccccCCCCCCccchhHhHHHHh
Q 021178 176 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 210 (316)
Q Consensus 176 ~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk 210 (316)
-..|.+|+.. -|.|-.-.-| -.+|-.|.-..+.
T Consensus 37 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~ 69 (144)
T 2p57_A 37 NKACFDCGAK-NPSWASITYG-VFLCIDCSGVHRS 69 (144)
T ss_dssp GGBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHH
T ss_pred CCcCCCCcCC-CCCeEEeccC-EEEhhhchHHHcC
Confidence 4579999986 5999988889 6899999664443
No 26
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=30.57 E-value=17 Score=31.28 Aligned_cols=33 Identities=30% Similarity=0.689 Sum_probs=26.5
Q ss_pred CcccccCCCCCCCccccCCCCCCccchhHhHHHHh
Q 021178 176 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 210 (316)
Q Consensus 176 ~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk 210 (316)
-..|++|+... |.|-.-.-| -.+|-.|.-..+.
T Consensus 38 N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~ 70 (147)
T 3dwd_A 38 NNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRG 70 (147)
T ss_dssp TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred CCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhc
Confidence 45799999874 999999889 7899999754433
No 27
>2qiy_C Ubiquitin carboxyl-terminal hydrolase 3; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae}
Probab=30.21 E-value=16 Score=26.31 Aligned_cols=13 Identities=23% Similarity=0.800 Sum_probs=7.3
Q ss_pred Ccc-cCcCeeecCC
Q 021178 41 AAS-VSRPIFLNSS 53 (316)
Q Consensus 41 ~ss-~s~~~~fn~~ 53 (316)
+.+ +++|+|||..
T Consensus 15 ~~~~ie~Plf~NT~ 28 (48)
T 2qiy_C 15 SSNLIQLPLFINTT 28 (48)
T ss_dssp ------CCEEESSC
T ss_pred cccceeeeeEeeCC
Confidence 356 7999999975
No 28
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=29.02 E-value=14 Score=33.37 Aligned_cols=34 Identities=24% Similarity=0.585 Sum_probs=23.1
Q ss_pred CCCcccccCCCCCCCccccCCCCCCccchhHhHHH
Q 021178 174 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 208 (316)
Q Consensus 174 ~~~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~ 208 (316)
.....|-.|+...+-+--.-..| ..+|..||+-+
T Consensus 19 n~~~~CPECGs~~t~IV~D~erG-E~VCsdCGLVL 52 (197)
T 3k1f_M 19 NIVLTCPECKVYPPKIVERFSEG-DVVCALCGLVL 52 (197)
T ss_dssp CCCCCCTTTCCSSCCEEEEGGGT-EEEETTTCBBC
T ss_pred ccCeECcCCCCcCCeEEEeCCCC-EEEEcCCCCCc
Confidence 34568999998544333333446 68999999843
No 29
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=28.20 E-value=6.3 Score=27.86 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=23.4
Q ss_pred CcccccCCCCC----CCccccCCCCCC--ccchhHhHHH
Q 021178 176 VRICSDCNTTT----TPLWRSGPRGPK--SLCNACGIRQ 208 (316)
Q Consensus 176 ~~~CsnC~Tt~----TPlWRrGP~G~~--~LCNACGL~~ 208 (316)
...|..|+-.. +.+||...++.. +.|..||-.|
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEe
Confidence 56799999854 346787776622 3699999765
No 30
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=26.69 E-value=13 Score=34.75 Aligned_cols=35 Identities=26% Similarity=0.576 Sum_probs=25.3
Q ss_pred CCcccccCCCCCCCcc----ccCCCCCC--ccchhHhHHHH
Q 021178 175 TVRICSDCNTTTTPLW----RSGPRGPK--SLCNACGIRQR 209 (316)
Q Consensus 175 ~~~~CsnC~Tt~TPlW----RrGP~G~~--~LCNACGL~~r 209 (316)
....|..|+-...-.| |.+.+|-. +.|..||-+|+
T Consensus 267 ~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 267 DRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred ccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 3568999998887665 55655532 36999999884
No 31
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=23.24 E-value=28 Score=30.43 Aligned_cols=32 Identities=34% Similarity=0.651 Sum_probs=25.6
Q ss_pred CcccccCCCCCCCccccCCCCCCccchhHhHHHH
Q 021178 176 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQR 209 (316)
Q Consensus 176 ~~~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~r 209 (316)
-..|++|+.. -|.|-.-.-| -.+|-.|.-..|
T Consensus 22 N~~CaDCga~-~P~WaS~nlG-vflCi~CSGiHR 53 (163)
T 3sub_A 22 NNKCFDCGIS-NPDWVSVNHG-IFLCINCSGVHR 53 (163)
T ss_dssp GGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHH
T ss_pred CCccccCCCC-CCCeEEecCC-eeEHHhhhHHhc
Confidence 3579999986 6999999889 789999954333
No 32
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=21.80 E-value=23 Score=25.83 Aligned_cols=38 Identities=32% Similarity=0.500 Sum_probs=31.0
Q ss_pred CCCCCCCCccccc--CCCCCCCccccCCCCCCccchhHhH
Q 021178 169 SSNSNNTVRICSD--CNTTTTPLWRSGPRGPKSLCNACGI 206 (316)
Q Consensus 169 s~~~~~~~~~Csn--C~Tt~TPlWRrGP~G~~~LCNACGL 206 (316)
++.......+|.. |++---|.++=...|..-.||-|+.
T Consensus 2 ~~~~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~ 41 (59)
T 2yrc_A 2 SSGSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQ 41 (59)
T ss_dssp CCSSCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCC
T ss_pred CccCCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCC
Confidence 3445677889998 9999999998777776678999976
No 33
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=21.64 E-value=17 Score=31.49 Aligned_cols=35 Identities=26% Similarity=0.576 Sum_probs=23.4
Q ss_pred CCcccccCCCCCCCcc----ccCCCCCC--ccchhHhHHHH
Q 021178 175 TVRICSDCNTTTTPLW----RSGPRGPK--SLCNACGIRQR 209 (316)
Q Consensus 175 ~~~~CsnC~Tt~TPlW----RrGP~G~~--~LCNACGL~~r 209 (316)
....|..|+-...-.| |++.++.- +.|..||-+|+
T Consensus 136 ~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 136 DRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 4568999998774433 55555522 35999998773
Done!