Query 021180
Match_columns 316
No_of_seqs 228 out of 1349
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 08:13:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00254 40S ribosomal protein 100.0 1.5E-85 3.3E-90 610.5 23.0 220 7-226 3-222 (249)
2 TIGR01012 Sa_S2_E_A ribosomal 100.0 2.1E-74 4.6E-79 520.7 19.9 195 15-210 2-196 (196)
3 KOG0830 40S ribosomal protein 100.0 1.2E-73 2.5E-78 523.5 14.9 223 34-257 1-226 (254)
4 PRK04020 rps2P 30S ribosomal p 100.0 5E-70 1.1E-74 494.9 18.2 195 15-210 8-202 (204)
5 COG0052 RpsB Ribosomal protein 100.0 8.9E-63 1.9E-67 456.0 15.9 178 16-194 3-228 (252)
6 PRK12311 rpsB 30S ribosomal pr 100.0 4E-57 8.8E-62 434.9 16.4 173 19-192 1-222 (326)
7 PRK05299 rpsB 30S ribosomal pr 100.0 5.4E-57 1.2E-61 422.3 16.7 177 15-192 2-227 (258)
8 TIGR01011 rpsB_bact ribosomal 100.0 2.5E-56 5.4E-61 410.4 17.3 174 17-191 2-224 (225)
9 CHL00067 rps2 ribosomal protei 100.0 8.4E-55 1.8E-59 401.4 16.2 177 13-190 4-229 (230)
10 cd01425 RPS2 Ribosomal protein 100.0 1.2E-54 2.6E-59 389.7 15.3 166 22-188 1-193 (193)
11 PF00318 Ribosomal_S2: Ribosom 100.0 1.9E-51 4E-56 373.9 16.8 168 22-190 1-211 (211)
12 KOG0832 Mitochondrial/chloropl 100.0 2.1E-48 4.5E-53 356.2 15.9 182 10-192 40-243 (251)
13 PRK12570 N-acetylmuramic acid- 96.4 0.056 1.2E-06 52.2 12.8 146 56-205 38-223 (296)
14 cd05007 SIS_Etherase N-acetylm 96.1 0.045 9.8E-07 51.6 10.1 146 56-205 29-214 (257)
15 PRK05441 murQ N-acetylmuramic 96.0 0.13 2.9E-06 49.6 12.9 147 55-205 41-227 (299)
16 TIGR00274 N-acetylmuramic acid 95.5 0.19 4.2E-06 48.4 11.8 147 55-205 36-222 (291)
17 PRK00414 gmhA phosphoheptose i 94.2 1.5 3.3E-05 39.5 13.4 109 58-169 26-164 (192)
18 PRK10892 D-arabinose 5-phospha 94.1 1.3 2.9E-05 42.3 13.4 136 55-193 25-183 (326)
19 TIGR03127 RuMP_HxlB 6-phospho 93.9 1.5 3.3E-05 38.2 12.4 86 72-165 27-121 (179)
20 cd05006 SIS_GmhA Phosphoheptos 93.7 3.4 7.3E-05 36.1 14.3 107 59-168 16-153 (177)
21 cd05005 SIS_PHI Hexulose-6-pho 93.5 2.2 4.7E-05 37.4 12.8 108 54-169 10-130 (179)
22 PRK13938 phosphoheptose isomer 93.2 1.7 3.8E-05 39.6 12.0 112 57-169 26-166 (196)
23 PRK10886 DnaA initiator-associ 92.3 1.9 4.1E-05 39.4 11.0 115 59-173 24-169 (196)
24 PF13580 SIS_2: SIS domain; PD 92.3 0.7 1.5E-05 39.2 7.6 94 59-152 18-137 (138)
25 PRK13936 phosphoheptose isomer 92.2 1.4 2.9E-05 39.8 9.8 106 60-171 27-169 (197)
26 PRK02947 hypothetical protein; 92.2 2.6 5.7E-05 39.4 12.0 96 59-155 23-143 (246)
27 PRK00331 glucosamine--fructose 91.8 1.9 4E-05 45.2 11.6 121 72-194 286-423 (604)
28 PRK11557 putative DNA-binding 91.4 2.3 5E-05 39.6 10.7 91 72-167 125-226 (278)
29 PRK11302 DNA-binding transcrip 91.2 2.4 5.1E-05 39.5 10.6 92 72-167 125-225 (284)
30 PF10087 DUF2325: Uncharacteri 90.6 1.2 2.7E-05 35.6 7.1 75 77-151 1-81 (97)
31 cd05710 SIS_1 A subgroup of th 90.5 2.5 5.4E-05 34.8 9.0 61 120-180 45-113 (120)
32 PRK15482 transcriptional regul 90.1 3.8 8.1E-05 38.6 11.0 49 120-168 180-234 (285)
33 TIGR00441 gmhA phosphoheptose 89.5 8.5 0.00018 33.2 11.9 50 120-169 77-132 (154)
34 cd05008 SIS_GlmS_GlmD_1 SIS (S 89.4 2.5 5.5E-05 34.2 8.1 46 120-165 44-95 (126)
35 cd05013 SIS_RpiR RpiR-like pro 89.3 4 8.6E-05 32.8 9.2 97 73-170 11-114 (139)
36 TIGR00393 kpsF KpsF/GutQ famil 89.1 3.4 7.5E-05 38.0 9.7 75 119-193 44-136 (268)
37 cd05009 SIS_GlmS_GlmD_2 SIS (S 89.1 12 0.00026 31.0 12.5 117 72-193 10-141 (153)
38 PRK14101 bifunctional glucokin 89.0 3.8 8.2E-05 43.3 11.1 94 72-168 465-566 (638)
39 PRK13937 phosphoheptose isomer 88.9 12 0.00027 33.3 12.9 103 59-167 21-157 (188)
40 PRK08674 bifunctional phosphog 87.4 13 0.00027 36.2 12.9 127 60-194 13-159 (337)
41 PRK11337 DNA-binding transcrip 87.0 6.2 0.00013 37.1 10.2 48 120-167 185-238 (292)
42 PRK11382 frlB fructoselysine-6 86.9 9.1 0.0002 37.3 11.6 108 60-169 30-145 (340)
43 cd05014 SIS_Kpsf KpsF-like pro 85.5 5.8 0.00013 32.2 8.1 49 119-167 44-98 (128)
44 PF01380 SIS: SIS domain SIS d 81.1 9.7 0.00021 30.6 7.7 95 72-171 2-110 (131)
45 COG2103 Predicted sugar phosph 80.8 20 0.00044 35.0 10.8 148 55-206 39-226 (298)
46 COG0279 GmhA Phosphoheptose is 80.0 29 0.00064 31.7 10.9 114 56-169 21-164 (176)
47 PRK15408 autoinducer 2-binding 79.7 17 0.00036 35.3 10.1 98 65-165 12-124 (336)
48 TIGR01135 glmS glucosamine--fr 79.0 14 0.00029 38.8 9.8 119 73-194 289-425 (607)
49 cd06325 PBP1_ABC_uncharacteriz 77.4 4.6 9.9E-05 36.2 5.1 93 63-155 118-221 (281)
50 TIGR01470 cysG_Nterm siroheme 76.6 6.5 0.00014 35.9 5.9 67 73-149 30-98 (205)
51 PRK07765 para-aminobenzoate sy 76.3 7.2 0.00016 35.7 6.2 75 77-152 2-83 (214)
52 PRK11543 gutQ D-arabinose 5-ph 76.3 17 0.00036 34.5 8.9 47 119-165 86-138 (321)
53 COG1737 RpiR Transcriptional r 76.3 20 0.00044 34.0 9.4 49 119-167 174-228 (281)
54 PTZ00295 glucosamine-fructose- 73.0 30 0.00065 36.8 10.5 47 122-168 369-421 (640)
55 PLN02981 glucosamine:fructose- 72.6 35 0.00075 36.8 11.0 93 71-166 359-460 (680)
56 cd06295 PBP1_CelR Ligand bindi 72.0 8.2 0.00018 34.6 5.3 45 121-166 63-107 (275)
57 cd06294 PBP1_ycjW_transcriptio 69.8 17 0.00036 32.3 6.8 59 121-183 59-118 (270)
58 cd06278 PBP1_LacI_like_2 Ligan 69.3 19 0.00041 31.8 7.0 45 121-166 53-97 (266)
59 PRK13566 anthranilate synthase 68.9 38 0.00082 37.0 10.3 75 74-152 525-605 (720)
60 PF13241 NAD_binding_7: Putati 68.6 1.6 3.4E-05 35.3 -0.1 42 122-167 60-103 (103)
61 PRK05670 anthranilate synthase 66.6 12 0.00027 33.1 5.2 71 78-152 2-79 (189)
62 PRK11070 ssDNA exonuclease Rec 66.4 28 0.0006 37.0 8.6 96 59-155 52-160 (575)
63 cd06267 PBP1_LacI_sugar_bindin 66.1 23 0.0005 30.8 6.8 59 121-183 54-112 (264)
64 PF04007 DUF354: Protein of un 66.0 23 0.00051 35.0 7.5 92 61-158 12-116 (335)
65 cd06271 PBP1_AglR_RafR_like Li 63.9 28 0.00061 30.7 7.0 58 121-182 58-115 (268)
66 cd03786 GT1_UDP-GlcNAc_2-Epime 63.5 43 0.00092 31.5 8.5 37 120-160 275-311 (363)
67 COG1880 CdhB CO dehydrogenase/ 62.4 38 0.00083 30.7 7.4 94 64-166 27-153 (170)
68 TIGR01815 TrpE-clade3 anthrani 62.1 58 0.0013 35.6 10.2 75 74-152 515-595 (717)
69 PTZ00394 glucosamine-fructose- 61.8 63 0.0014 34.8 10.3 96 71-168 350-453 (670)
70 cd03812 GT1_CapH_like This fam 61.6 79 0.0017 29.0 9.8 89 59-151 207-296 (358)
71 PRK15484 lipopolysaccharide 1, 61.5 30 0.00065 33.7 7.3 98 59-160 208-315 (380)
72 TIGR00315 cdhB CO dehydrogenas 61.4 71 0.0015 28.6 9.0 81 76-156 29-137 (162)
73 PRK05562 precorrin-2 dehydroge 61.0 21 0.00046 33.5 5.8 31 123-153 86-118 (223)
74 TIGR03088 stp2 sugar transfera 60.9 46 0.001 31.4 8.3 100 57-161 207-311 (374)
75 cd06283 PBP1_RegR_EndR_KdgR_li 60.0 32 0.0007 30.3 6.7 43 121-164 54-96 (267)
76 PF02421 FeoB_N: Ferrous iron 59.8 13 0.00029 32.8 4.1 74 77-153 2-113 (156)
77 cd05017 SIS_PGI_PMI_1 The memb 59.4 15 0.00032 30.0 4.1 56 119-175 40-106 (119)
78 cd03420 SirA_RHOD_Pry_redox Si 59.2 20 0.00043 27.0 4.5 52 63-114 14-65 (69)
79 PRK11009 aphA acid phosphatase 58.7 83 0.0018 29.6 9.4 110 53-168 96-224 (237)
80 cd06273 PBP1_GntR_like_1 This 57.3 39 0.00085 30.0 6.8 57 122-182 55-111 (268)
81 cd01748 GATase1_IGP_Synthase T 56.3 33 0.00071 30.5 6.1 34 121-154 35-80 (198)
82 cd01743 GATase1_Anthranilate_S 56.2 35 0.00076 29.9 6.2 72 78-152 1-78 (184)
83 PF01206 TusA: Sulfurtransfera 55.3 25 0.00055 26.0 4.4 43 62-104 14-56 (70)
84 PRK05749 3-deoxy-D-manno-octul 55.0 58 0.0013 31.9 8.1 91 59-151 246-350 (425)
85 cd03808 GT1_cap1E_like This fa 55.0 1.3E+02 0.0028 26.7 9.7 97 60-161 204-302 (359)
86 PF13407 Peripla_BP_4: Peripla 53.6 44 0.00096 29.6 6.5 34 121-155 54-89 (257)
87 cd06274 PBP1_FruR Ligand bindi 53.6 41 0.00088 29.9 6.3 58 121-182 54-111 (264)
88 TIGR02128 G6PI_arch bifunction 53.5 1.8E+02 0.0039 28.3 11.1 59 121-180 65-134 (308)
89 cd05844 GT1_like_7 Glycosyltra 53.4 57 0.0012 30.2 7.5 90 59-151 203-300 (367)
90 PLN02846 digalactosyldiacylgly 53.3 52 0.0011 34.1 7.7 92 54-152 238-331 (462)
91 cd04949 GT1_gtfA_like This fam 53.2 60 0.0013 30.5 7.6 90 57-151 217-308 (372)
92 PRK06456 acetolactate synthase 53.2 66 0.0014 33.4 8.5 72 61-134 196-285 (572)
93 cd06299 PBP1_LacI_like_13 Liga 53.0 56 0.0012 28.9 7.1 44 121-165 54-97 (265)
94 CHL00101 trpG anthranilate syn 52.9 53 0.0011 29.2 6.8 72 78-152 2-79 (190)
95 PRK15395 methyl-galactoside AB 52.2 1.2E+02 0.0026 28.8 9.5 34 121-155 80-115 (330)
96 cd06285 PBP1_LacI_like_7 Ligan 51.8 55 0.0012 29.1 6.8 56 121-182 54-109 (265)
97 PTZ00295 glucosamine-fructose- 51.6 2E+02 0.0042 30.7 11.9 118 72-193 493-626 (640)
98 PRK06774 para-aminobenzoate sy 50.8 55 0.0012 29.0 6.6 70 78-152 2-79 (191)
99 cd03818 GT1_ExpC_like This fam 50.7 97 0.0021 29.9 8.8 102 56-161 224-339 (396)
100 cd00291 SirA_YedF_YeeD SirA, Y 50.7 35 0.00075 24.9 4.5 43 62-104 13-55 (69)
101 COG0560 SerB Phosphoserine pho 50.6 33 0.00072 31.4 5.3 98 65-172 82-190 (212)
102 PF00205 TPP_enzyme_M: Thiamin 50.2 42 0.00091 27.8 5.5 69 64-134 3-89 (137)
103 cd06318 PBP1_ABC_sugar_binding 50.1 86 0.0019 28.1 7.9 44 121-165 54-101 (282)
104 PLN02335 anthranilate synthase 50.0 51 0.0011 30.4 6.5 77 73-152 16-98 (222)
105 COG0028 IlvB Thiamine pyrophos 49.3 1.1E+02 0.0025 32.2 9.6 106 60-168 188-316 (550)
106 cd06292 PBP1_LacI_like_10 Liga 48.9 60 0.0013 28.9 6.6 59 121-183 54-118 (273)
107 cd06272 PBP1_hexuronate_repres 48.8 56 0.0012 29.0 6.4 58 121-183 50-107 (261)
108 TIGR02815 agaS_fam putative su 48.6 2.8E+02 0.0061 27.5 11.9 112 75-188 42-176 (372)
109 COG1879 RbsB ABC-type sugar tr 48.5 73 0.0016 29.8 7.4 70 88-158 52-128 (322)
110 cd06305 PBP1_methylthioribose_ 47.9 73 0.0016 28.3 7.0 42 121-163 54-97 (273)
111 TIGR00566 trpG_papA glutamine 47.5 51 0.0011 29.4 5.8 71 78-152 2-79 (188)
112 cd06270 PBP1_GalS_like Ligand 47.0 63 0.0014 28.8 6.5 58 121-182 54-111 (268)
113 PRK06718 precorrin-2 dehydroge 46.8 50 0.0011 30.0 5.8 28 120-148 68-97 (202)
114 cd03819 GT1_WavL_like This fam 46.3 58 0.0013 29.9 6.2 97 59-159 200-301 (355)
115 cd01536 PBP1_ABC_sugar_binding 46.1 66 0.0014 28.1 6.3 33 122-154 181-217 (267)
116 TIGR01591 Fdh-alpha formate de 45.9 2.5E+02 0.0054 29.6 11.5 107 42-151 57-190 (671)
117 cd06277 PBP1_LacI_like_1 Ligan 45.7 65 0.0014 28.7 6.3 41 121-163 57-97 (268)
118 PRK00945 acetyl-CoA decarbonyl 45.3 2E+02 0.0043 26.0 9.2 80 77-156 37-145 (171)
119 COG0449 GlmS Glucosamine 6-pho 44.9 61 0.0013 34.9 6.8 74 124-197 332-420 (597)
120 cd03422 YedF YedF is a bacteri 43.8 55 0.0012 24.6 4.7 41 64-104 15-55 (69)
121 cd06300 PBP1_ABC_sugar_binding 43.0 39 0.00084 30.2 4.4 43 121-164 59-103 (272)
122 cd06306 PBP1_TorT-like TorT-li 42.7 83 0.0018 28.3 6.6 31 121-151 56-87 (268)
123 cd03796 GT1_PIG-A_like This fa 42.6 75 0.0016 30.7 6.7 98 54-156 203-303 (398)
124 PRK07649 para-aminobenzoate/an 42.2 88 0.0019 28.2 6.6 71 78-152 2-79 (195)
125 KOG1401 Acetylornithine aminot 42.0 45 0.00098 34.4 5.1 65 49-113 88-164 (433)
126 cd06308 PBP1_sensor_kinase_lik 41.6 1E+02 0.0022 27.6 6.9 34 121-155 55-90 (270)
127 cd04795 SIS SIS domain. SIS (S 41.6 75 0.0016 23.5 5.2 33 120-152 45-81 (87)
128 PF04413 Glycos_transf_N: 3-De 41.5 34 0.00074 30.7 3.8 86 62-151 34-124 (186)
129 COG0608 RecJ Single-stranded D 41.5 1.6E+02 0.0035 30.3 9.1 96 57-155 17-122 (491)
130 PRK10637 cysG siroheme synthas 41.3 67 0.0015 32.8 6.3 26 123-148 73-100 (457)
131 cd06279 PBP1_LacI_like_3 Ligan 40.9 58 0.0013 29.6 5.3 42 121-164 55-96 (283)
132 PRK13181 hisH imidazole glycer 40.8 95 0.0021 27.7 6.6 35 120-154 35-81 (199)
133 PRK15179 Vi polysaccharide bio 40.7 1.5E+02 0.0032 32.4 9.1 113 54-171 527-645 (694)
134 cd03821 GT1_Bme6_like This fam 40.7 1.1E+02 0.0024 27.3 7.1 75 75-151 234-311 (375)
135 PF14336 DUF4392: Domain of un 40.4 1.5E+02 0.0032 28.7 8.2 21 136-156 166-186 (291)
136 TIGR03590 PseG pseudaminic aci 40.2 3E+02 0.0064 25.9 10.1 115 46-169 5-127 (279)
137 cd03822 GT1_ecORF704_like This 40.1 1.1E+02 0.0023 27.8 6.9 76 75-151 216-299 (366)
138 cd06317 PBP1_ABC_sugar_binding 39.9 77 0.0017 28.1 5.9 35 121-156 55-91 (275)
139 cd06307 PBP1_uncharacterized_s 39.9 1E+02 0.0022 27.6 6.7 31 122-152 58-90 (275)
140 PF13528 Glyco_trans_1_3: Glyc 39.6 63 0.0014 30.0 5.4 35 121-158 93-127 (318)
141 COG1648 CysG Siroheme synthase 39.5 92 0.002 28.8 6.4 29 123-151 73-103 (210)
142 PRK09259 putative oxalyl-CoA d 39.3 1.2E+02 0.0025 31.6 7.8 73 60-134 201-284 (569)
143 TIGR01855 IMP_synth_hisH imida 39.2 95 0.0021 27.7 6.3 16 138-153 64-79 (196)
144 cd06282 PBP1_GntR_like_2 Ligan 39.1 1.2E+02 0.0025 26.7 6.8 35 121-156 54-89 (266)
145 TIGR03457 sulphoacet_xsc sulfo 39.1 1.2E+02 0.0025 31.7 7.8 72 61-134 185-274 (579)
146 PLN02275 transferase, transfer 39.1 68 0.0015 31.0 5.7 73 76-151 262-339 (371)
147 PRK15490 Vi polysaccharide bio 39.0 1.3E+02 0.0028 32.3 8.1 99 57-161 411-511 (578)
148 cd01575 PBP1_GntR Ligand-bindi 38.8 1.4E+02 0.0031 26.1 7.4 35 121-155 54-88 (268)
149 PLN02501 digalactosyldiacylgly 38.6 99 0.0021 34.3 7.3 94 53-152 555-649 (794)
150 PRK01710 murD UDP-N-acetylmura 38.4 2.5E+02 0.0054 28.3 9.9 62 121-183 76-140 (458)
151 PF06258 Mito_fiss_Elm1: Mitoc 38.3 2.6E+02 0.0055 27.3 9.6 102 42-151 152-255 (311)
152 PRK00299 sulfur transfer prote 38.3 67 0.0015 25.0 4.6 41 64-104 25-65 (81)
153 TIGR02634 xylF D-xylose ABC tr 38.2 1.3E+02 0.0028 28.1 7.2 35 121-156 53-89 (302)
154 PRK06048 acetolactate synthase 38.2 1.3E+02 0.0029 31.2 8.0 72 61-134 196-285 (561)
155 PRK00331 glucosamine--fructose 37.9 5E+02 0.011 27.3 13.3 115 74-193 460-590 (604)
156 PRK05858 hypothetical protein; 37.8 1.3E+02 0.0029 31.0 7.9 72 61-134 192-274 (542)
157 TIGR00888 guaA_Nterm GMP synth 37.4 1.2E+02 0.0025 26.7 6.5 19 135-153 60-78 (188)
158 COG2222 AgaS Predicted phospho 37.2 4.3E+02 0.0094 26.3 12.5 127 57-184 18-155 (340)
159 cd06297 PBP1_LacI_like_12 Liga 37.1 1.2E+02 0.0026 27.2 6.8 57 122-184 55-111 (269)
160 TIGR01672 AphA HAD superfamily 36.8 1.3E+02 0.0028 28.3 7.0 97 65-168 119-224 (237)
161 cd04951 GT1_WbdM_like This fam 36.7 1.6E+02 0.0034 27.0 7.5 92 59-156 203-296 (360)
162 cd01574 PBP1_LacI Ligand-bindi 36.3 1.6E+02 0.0034 26.0 7.2 35 121-156 55-89 (264)
163 cd04962 GT1_like_5 This family 36.1 1.8E+02 0.004 26.9 7.9 72 75-150 227-299 (371)
164 TIGR02149 glgA_Coryne glycogen 36.0 1.4E+02 0.0031 28.1 7.3 45 107-151 264-310 (388)
165 cd06287 PBP1_LacI_like_8 Ligan 35.9 3.1E+02 0.0067 24.9 9.3 31 121-151 55-85 (269)
166 cd03423 SirA SirA (also known 35.4 78 0.0017 23.7 4.4 51 63-113 14-64 (69)
167 cd03820 GT1_amsD_like This fam 35.3 2.2E+02 0.0047 25.1 8.0 89 59-151 193-282 (348)
168 PRK08007 para-aminobenzoate sy 35.3 89 0.0019 27.8 5.5 71 78-152 2-79 (187)
169 PRK06882 acetolactate synthase 35.2 1.8E+02 0.0038 30.3 8.4 73 62-136 196-286 (574)
170 cd03421 SirA_like_N SirA_like_ 35.1 1E+02 0.0022 22.7 4.9 39 63-102 14-52 (67)
171 TIGR00173 menD 2-succinyl-5-en 35.0 3E+02 0.0064 27.6 9.7 103 62-168 201-324 (432)
172 CHL00197 carA carbamoyl-phosph 34.7 1.4E+02 0.0031 30.2 7.4 71 76-152 193-270 (382)
173 PRK00025 lpxB lipid-A-disaccha 34.7 2.3E+02 0.0051 26.9 8.6 85 59-154 204-289 (380)
174 PRK15427 colanic acid biosynth 34.5 1.4E+02 0.003 29.6 7.2 102 56-161 234-343 (406)
175 cd06311 PBP1_ABC_sugar_binding 34.5 93 0.002 27.8 5.5 60 121-184 59-122 (274)
176 KOG1554 COP9 signalosome, subu 34.2 17 0.00037 35.8 0.7 40 103-146 142-183 (347)
177 TIGR01441 GPR GPR endopeptidas 34.1 34 0.00074 34.5 2.8 57 121-186 173-255 (358)
178 PTZ00394 glucosamine-fructose- 34.1 4.1E+02 0.0089 28.8 11.1 114 73-193 524-656 (670)
179 cd01542 PBP1_TreR_like Ligand- 34.1 1.1E+02 0.0025 26.8 6.0 21 63-84 103-123 (259)
180 cd06298 PBP1_CcpA_like Ligand- 33.9 91 0.002 27.5 5.3 32 121-152 54-85 (268)
181 cd06301 PBP1_rhizopine_binding 33.9 1.4E+02 0.0031 26.5 6.6 34 122-156 56-91 (272)
182 PRK08857 para-aminobenzoate sy 33.8 1.7E+02 0.0038 25.9 7.1 71 78-152 2-79 (193)
183 cd06319 PBP1_ABC_sugar_binding 33.7 1.7E+02 0.0037 26.0 7.1 61 121-185 54-117 (277)
184 cd06302 PBP1_LsrB_Quorum_Sensi 33.7 1E+02 0.0022 28.4 5.8 35 121-156 55-91 (298)
185 cd01742 GATase1_GMP_Synthase T 33.5 1.7E+02 0.0038 25.2 6.9 16 138-153 63-78 (181)
186 cd01540 PBP1_arabinose_binding 33.2 1.5E+02 0.0032 26.7 6.6 32 121-152 53-86 (289)
187 TIGR01823 PabB-fungal aminodeo 33.1 1.2E+02 0.0026 33.3 7.0 78 74-153 4-94 (742)
188 TIGR00118 acolac_lg acetolacta 33.1 1.8E+02 0.0039 30.1 8.0 71 62-134 191-279 (558)
189 PRK08322 acetolactate synthase 32.9 2.4E+02 0.0053 28.9 8.9 72 61-134 185-274 (547)
190 cd06296 PBP1_CatR_like Ligand- 32.3 1E+02 0.0022 27.4 5.3 34 121-155 54-87 (270)
191 cd03813 GT1_like_3 This family 32.3 1.9E+02 0.0042 29.1 7.9 86 59-150 308-399 (475)
192 PRK05637 anthranilate synthase 32.2 1.5E+02 0.0032 27.2 6.5 73 76-152 2-80 (208)
193 PRK08978 acetolactate synthase 32.2 1.9E+02 0.0042 29.8 8.0 73 61-135 185-275 (548)
194 cd01741 GATase1_1 Subgroup of 32.0 2E+02 0.0043 25.0 7.1 36 119-154 43-90 (188)
195 cd06289 PBP1_MalI_like Ligand- 32.0 1.1E+02 0.0025 26.8 5.6 45 121-166 54-99 (268)
196 cd02767 MopB_ydeP The MopB_yde 31.7 3.1E+02 0.0067 29.1 9.5 100 50-155 78-201 (574)
197 cd01141 TroA_d Periplasmic bin 31.6 62 0.0013 27.8 3.8 35 117-151 64-98 (186)
198 PRK08199 thiamine pyrophosphat 31.6 1.9E+02 0.0042 29.9 8.0 71 62-134 194-282 (557)
199 CHL00099 ilvB acetohydroxyacid 31.5 1.9E+02 0.0041 30.3 7.9 72 61-134 206-295 (585)
200 PRK06895 putative anthranilate 31.5 1.7E+02 0.0038 25.8 6.7 71 76-152 2-79 (190)
201 cd03811 GT1_WabH_like This fam 31.5 2.2E+02 0.0048 25.0 7.4 73 75-151 220-293 (353)
202 PRK02858 germination protease; 31.3 40 0.00087 34.1 2.8 57 121-186 183-265 (369)
203 cd06312 PBP1_ABC_sugar_binding 31.3 1.4E+02 0.003 26.7 6.1 32 121-152 56-89 (271)
204 TIGR02417 fruct_sucro_rep D-fr 31.2 1.3E+02 0.0027 28.0 6.0 45 121-166 115-160 (327)
205 COG1954 GlpP Glycerol-3-phosph 31.1 44 0.00096 30.7 2.8 125 17-150 14-149 (181)
206 cd01538 PBP1_ABC_xylose_bindin 31.0 91 0.002 28.5 5.0 35 121-156 54-90 (288)
207 cd01537 PBP1_Repressors_Sugar_ 31.0 88 0.0019 27.0 4.6 33 122-154 178-216 (264)
208 PRK07710 acetolactate synthase 30.9 2.1E+02 0.0045 29.8 8.1 71 62-134 205-293 (571)
209 PRK09939 putative oxidoreducta 30.7 2.7E+02 0.0058 30.8 9.1 103 47-154 119-245 (759)
210 TIGR03087 stp1 sugar transfera 30.7 2.5E+02 0.0055 27.1 8.2 68 75-151 259-328 (397)
211 PF01973 MAF_flag10: Protein o 30.7 1.3E+02 0.0028 26.0 5.6 73 75-150 24-98 (170)
212 PRK13170 hisH imidazole glycer 30.6 1.7E+02 0.0037 26.2 6.5 14 139-152 64-77 (196)
213 PRK10014 DNA-binding transcrip 30.5 1.8E+02 0.0039 27.1 6.9 44 121-165 119-163 (342)
214 PF11238 DUF3039: Protein of u 30.5 36 0.00078 25.9 1.7 19 136-154 15-33 (58)
215 PRK08266 hypothetical protein; 30.4 2.1E+02 0.0044 29.5 7.9 73 62-136 195-277 (542)
216 PRK07789 acetolactate synthase 30.3 1.9E+02 0.0041 30.5 7.7 73 61-135 220-310 (612)
217 PRK13818 ribosome-binding fact 30.3 78 0.0017 26.8 4.0 65 146-212 31-97 (121)
218 PF01497 Peripla_BP_2: Peripla 30.3 1.5E+02 0.0033 26.0 6.1 41 116-156 54-94 (238)
219 TIGR02137 HSK-PSP phosphoserin 29.9 98 0.0021 28.0 4.9 92 65-169 73-171 (203)
220 PRK06965 acetolactate synthase 29.9 2.1E+02 0.0047 29.9 8.0 73 61-135 210-300 (587)
221 TIGR02193 heptsyl_trn_I lipopo 29.8 3.2E+02 0.007 25.6 8.6 33 120-156 252-284 (319)
222 PRK08527 acetolactate synthase 29.7 2.1E+02 0.0045 29.7 7.8 73 60-134 191-281 (563)
223 PF01075 Glyco_transf_9: Glyco 29.4 1.3E+02 0.0028 26.9 5.6 81 66-154 127-211 (247)
224 PRK09107 acetolactate synthase 29.3 2.7E+02 0.0057 29.4 8.6 72 61-134 201-292 (595)
225 cd06323 PBP1_ribose_binding Pe 29.2 3.1E+02 0.0068 24.0 7.9 59 122-180 181-249 (268)
226 cd03801 GT1_YqgM_like This fam 29.2 2.1E+02 0.0046 25.2 6.8 74 75-151 230-305 (374)
227 TIGR01481 ccpA catabolite cont 29.0 1.7E+02 0.0038 27.0 6.5 34 121-155 114-147 (329)
228 cd06314 PBP1_tmGBP Periplasmic 29.0 1.8E+02 0.0039 26.0 6.5 57 121-182 54-113 (271)
229 PF00534 Glycos_transf_1: Glyc 28.6 64 0.0014 26.7 3.2 95 56-152 27-123 (172)
230 cd03809 GT1_mtfB_like This fam 28.6 3.7E+02 0.008 24.2 8.5 31 120-150 270-301 (365)
231 COG3535 Uncharacterized conser 28.6 50 0.0011 33.2 2.9 38 121-170 294-331 (357)
232 PRK13143 hisH imidazole glycer 28.6 1.9E+02 0.0041 25.9 6.4 20 135-154 61-80 (200)
233 PRK05718 keto-hydroxyglutarate 28.5 1.9E+02 0.0042 26.7 6.6 81 64-149 28-112 (212)
234 PRK06276 acetolactate synthase 28.5 2.2E+02 0.0048 29.8 7.8 72 61-134 192-281 (586)
235 PRK00421 murC UDP-N-acetylmura 28.4 1.9E+02 0.0042 29.1 7.1 57 121-178 65-124 (461)
236 cd06273 PBP1_GntR_like_1 This 28.3 1.6E+02 0.0035 26.0 5.9 35 121-155 177-217 (268)
237 PF07085 DRTGG: DRTGG domain; 28.3 55 0.0012 26.1 2.7 29 123-151 62-91 (105)
238 TIGR03254 oxalate_oxc oxalyl-C 28.2 2.2E+02 0.0048 29.5 7.7 71 62-134 196-277 (554)
239 PRK14987 gluconate operon tran 28.1 1.2E+02 0.0027 28.2 5.4 35 121-155 118-152 (331)
240 TIGR02918 accessory Sec system 28.0 2E+02 0.0044 29.7 7.4 108 54-168 329-444 (500)
241 COG1519 KdtA 3-deoxy-D-manno-o 28.0 1.3E+02 0.0027 31.2 5.7 89 53-151 57-152 (419)
242 cd01635 Glycosyltransferase_GT 27.8 2.9E+02 0.0063 22.9 7.2 92 58-151 118-211 (229)
243 PRK07418 acetolactate synthase 27.7 2.5E+02 0.0055 29.6 8.1 73 60-134 212-302 (616)
244 TIGR00696 wecB_tagA_cpsF bacte 27.3 2.5E+02 0.0054 25.2 7.0 80 67-148 39-128 (177)
245 cd02752 MopB_Formate-Dh-Na-lik 27.3 5.3E+02 0.011 28.0 10.5 127 49-182 67-235 (649)
246 PRK07525 sulfoacetaldehyde ace 26.9 2.4E+02 0.0052 29.5 7.8 72 61-134 189-278 (588)
247 cd03807 GT1_WbnK_like This fam 26.7 2.6E+02 0.0055 24.9 7.0 88 59-150 208-297 (365)
248 cd06323 PBP1_ribose_binding Pe 26.7 2.2E+02 0.0047 25.0 6.4 32 122-153 55-88 (268)
249 cd06320 PBP1_allose_binding Pe 26.7 2.6E+02 0.0055 24.9 7.0 92 64-155 110-219 (275)
250 cd06313 PBP1_ABC_sugar_binding 26.6 1.9E+02 0.0042 26.1 6.3 35 122-157 55-91 (272)
251 COG0449 GlmS Glucosamine 6-pho 26.5 8.6E+02 0.019 26.4 12.5 116 72-193 452-583 (597)
252 PRK08155 acetolactate synthase 26.5 2E+02 0.0044 29.8 7.1 73 61-135 200-290 (564)
253 PF10740 DUF2529: Protein of u 26.5 2.4E+02 0.0052 25.8 6.6 87 61-152 23-115 (172)
254 COG0518 GuaA GMP synthase - Gl 26.3 2.9E+02 0.0062 25.3 7.3 72 77-152 3-86 (198)
255 cd03805 GT1_ALG2_like This fam 25.9 3E+02 0.0065 25.9 7.6 97 57-157 224-334 (392)
256 cd01542 PBP1_TreR_like Ligand- 25.8 1.4E+02 0.003 26.2 5.1 31 121-151 54-84 (259)
257 PF00117 GATase: Glutamine ami 25.8 95 0.0021 27.0 3.9 33 120-152 40-79 (192)
258 PRK11018 hypothetical protein; 25.8 1.6E+02 0.0036 22.7 4.8 39 66-104 26-64 (78)
259 PRK00994 F420-dependent methyl 25.7 98 0.0021 30.0 4.2 36 121-156 59-98 (277)
260 cd06322 PBP1_ABC_sugar_binding 25.7 2.4E+02 0.0052 24.9 6.6 35 121-156 54-90 (267)
261 cd06343 PBP1_ABC_ligand_bindin 25.7 5.7E+02 0.012 24.1 9.5 73 75-147 144-225 (362)
262 COG1029 FwdB Formylmethanofura 25.7 1.4E+02 0.003 30.7 5.4 43 60-102 67-109 (429)
263 TIGR00661 MJ1255 conserved hyp 25.7 3.5E+02 0.0076 25.6 8.0 31 121-154 92-122 (321)
264 PRK12362 germination protease; 25.5 4.6E+02 0.0099 26.2 8.9 51 121-180 171-247 (318)
265 cd01147 HemV-2 Metal binding p 25.4 1.1E+02 0.0024 27.5 4.4 41 113-153 65-106 (262)
266 cd03816 GT1_ALG1_like This fam 25.4 2.5E+02 0.0055 27.6 7.3 97 55-155 243-350 (415)
267 cd03794 GT1_wbuB_like This fam 25.4 3.3E+02 0.007 24.4 7.4 35 120-154 292-332 (394)
268 PRK11269 glyoxylate carboligas 25.1 2.5E+02 0.0054 29.4 7.4 72 61-134 192-282 (591)
269 PLN02470 acetolactate synthase 25.0 3E+02 0.0065 28.8 8.0 72 61-134 204-291 (585)
270 PRK06725 acetolactate synthase 24.8 2.8E+02 0.006 29.0 7.8 73 61-135 203-293 (570)
271 PF03808 Glyco_tran_WecB: Glyc 24.8 3.6E+02 0.0079 23.6 7.5 83 68-152 40-132 (172)
272 PLN02347 GMP synthetase 24.8 1.9E+02 0.0041 30.6 6.5 73 76-152 11-93 (536)
273 cd06271 PBP1_AglR_RafR_like Li 24.8 2.1E+02 0.0046 25.0 6.1 34 121-154 180-219 (268)
274 cd03800 GT1_Sucrose_synthase T 24.6 2.4E+02 0.0052 26.3 6.6 32 120-151 300-332 (398)
275 PRK06154 hypothetical protein; 24.6 3E+02 0.0065 28.8 7.9 72 61-134 203-292 (565)
276 cd01545 PBP1_SalR Ligand-bindi 24.4 1.6E+02 0.0035 25.9 5.2 35 121-156 55-90 (270)
277 cd06533 Glyco_transf_WecG_TagA 24.4 3.4E+02 0.0073 23.8 7.2 83 66-149 36-128 (171)
278 cd06334 PBP1_ABC_ligand_bindin 24.3 6.4E+02 0.014 24.2 10.3 73 75-147 140-221 (351)
279 PF06925 MGDG_synth: Monogalac 24.2 88 0.0019 27.0 3.4 35 121-156 88-126 (169)
280 KOG1924 RhoA GTPase effector D 24.2 2.3E+02 0.0049 32.0 7.0 8 153-160 397-404 (1102)
281 cd06298 PBP1_CcpA_like Ligand- 24.1 2.1E+02 0.0046 25.1 5.9 32 123-154 178-215 (268)
282 PRK10653 D-ribose transporter 23.9 2.9E+02 0.0062 25.3 6.9 120 63-182 135-277 (295)
283 TIGR00644 recJ single-stranded 23.8 7.6E+02 0.017 25.8 10.7 93 60-154 38-143 (539)
284 PRK06490 glutamine amidotransf 23.8 3.6E+02 0.0078 25.1 7.6 73 76-152 8-93 (239)
285 cd06330 PBP1_Arsenic_SBP_like 23.7 6E+02 0.013 23.6 9.8 83 64-146 126-220 (346)
286 PRK07586 hypothetical protein; 23.6 2.2E+02 0.0048 29.1 6.6 70 61-132 186-272 (514)
287 cd01149 HutB Hemin binding pro 23.6 98 0.0021 27.7 3.7 39 113-151 49-87 (235)
288 cd06320 PBP1_allose_binding Pe 23.2 1.3E+02 0.0029 26.7 4.5 41 122-163 57-99 (275)
289 cd01543 PBP1_XylR Ligand-bindi 23.1 2.7E+02 0.0058 24.8 6.4 43 121-166 49-91 (265)
290 PRK12564 carbamoyl phosphate s 23.0 2.7E+02 0.0059 27.9 7.0 71 76-152 178-255 (360)
291 cd06284 PBP1_LacI_like_6 Ligan 23.0 3.3E+02 0.0072 23.8 6.9 33 121-154 54-86 (267)
292 cd01391 Periplasmic_Binding_Pr 22.9 2.5E+02 0.0054 23.7 5.9 34 122-155 58-92 (269)
293 TIGR01368 CPSaseIIsmall carbam 22.7 2.6E+02 0.0056 28.1 6.7 70 77-153 175-251 (358)
294 TIGR03449 mycothiol_MshA UDP-N 22.7 3E+02 0.0066 26.2 7.1 32 120-151 300-332 (405)
295 PF01646 Herpes_UL24: Herpes v 22.6 1.5E+02 0.0032 27.1 4.6 32 179-210 108-140 (179)
296 PRK09922 UDP-D-galactose:(gluc 22.5 3.5E+02 0.0076 25.7 7.4 78 71-153 206-288 (359)
297 PRK13816 ribosome-binding fact 22.5 1.3E+02 0.0028 25.9 4.0 67 146-212 32-104 (131)
298 COG0794 GutQ Predicted sugar p 22.5 6.4E+02 0.014 23.5 11.4 97 73-170 37-142 (202)
299 cd01744 GATase1_CPSase Small c 22.3 2.8E+02 0.006 24.2 6.2 20 135-154 59-78 (178)
300 TIGR01491 HAD-SF-IB-PSPlk HAD- 22.2 3.3E+02 0.0072 23.1 6.6 100 65-171 85-192 (201)
301 PRK09130 NADH dehydrogenase su 22.2 8.9E+02 0.019 26.3 11.1 86 75-160 305-408 (687)
302 KOG2862 Alanine-glyoxylate ami 22.1 3.1E+02 0.0067 27.8 7.0 98 72-172 89-207 (385)
303 cd01537 PBP1_Repressors_Sugar_ 22.1 3.9E+02 0.0085 22.9 7.1 32 121-152 54-86 (264)
304 COG3914 Spy Predicted O-linked 22.1 3.6E+02 0.0078 29.3 7.8 103 41-152 431-538 (620)
305 PRK01368 murD UDP-N-acetylmura 22.0 2.7E+02 0.0058 28.4 6.8 63 120-183 61-127 (454)
306 TIGR01135 glmS glucosamine--fr 21.7 9.5E+02 0.021 25.2 12.6 115 74-193 462-593 (607)
307 smart00481 POLIIIAc DNA polyme 21.7 96 0.0021 22.5 2.7 22 135-156 18-39 (67)
308 PRK10307 putative glycosyl tra 21.5 2.8E+02 0.006 26.8 6.6 91 59-154 244-340 (412)
309 COG1817 Uncharacterized protei 21.5 2.5E+02 0.0054 28.3 6.2 91 61-156 12-115 (346)
310 PLN02573 pyruvate decarboxylas 21.5 2.6E+02 0.0055 29.4 6.7 70 62-134 214-303 (578)
311 PF02481 DNA_processg_A: DNA r 21.4 1.1E+02 0.0025 28.0 3.7 93 75-204 44-141 (212)
312 PRK08327 acetolactate synthase 21.4 3.3E+02 0.0071 28.4 7.5 72 61-134 209-291 (569)
313 COG0513 SrmB Superfamily II DN 21.4 1.5E+02 0.0033 30.8 5.0 97 34-152 243-345 (513)
314 PRK04690 murD UDP-N-acetylmura 21.3 3E+02 0.0065 28.0 7.0 62 120-182 67-137 (468)
315 TIGR00236 wecB UDP-N-acetylglu 21.1 3.9E+02 0.0084 25.5 7.4 30 122-155 274-303 (365)
316 PRK03369 murD UDP-N-acetylmura 21.0 3E+02 0.0066 28.2 7.0 85 49-150 14-99 (488)
317 PRK00521 rbfA ribosome-binding 21.0 1.4E+02 0.003 25.0 3.9 64 146-212 34-99 (120)
318 cd03799 GT1_amsK_like This is 21.0 3.7E+02 0.0081 24.4 7.0 90 59-151 194-291 (355)
319 cd01144 BtuF Cobalamin binding 20.8 1.3E+02 0.0028 26.9 3.9 38 114-151 49-86 (245)
320 COG0771 MurD UDP-N-acetylmuram 20.8 3.7E+02 0.008 27.9 7.6 125 50-187 10-137 (448)
321 cd06831 PLPDE_III_ODC_like_AZI 20.6 3.2E+02 0.0069 27.4 6.9 102 49-159 14-115 (394)
322 cd02763 MopB_2 The MopB_2 CD i 20.6 8.1E+02 0.017 26.7 10.4 99 50-151 70-190 (679)
323 PRK07064 hypothetical protein; 20.6 4E+02 0.0087 27.3 7.8 70 62-134 193-276 (544)
324 PRK12474 hypothetical protein; 20.5 2.2E+02 0.0048 29.2 6.0 70 61-132 190-276 (518)
325 PRK07092 benzoylformate decarb 20.4 3.7E+02 0.0081 27.6 7.6 69 62-132 196-282 (530)
326 PRK11303 DNA-binding transcrip 20.4 2.3E+02 0.005 26.2 5.6 45 121-166 116-161 (328)
327 TIGR03590 PseG pseudaminic aci 20.2 3.5E+02 0.0075 25.4 6.8 31 121-155 240-270 (279)
328 cd06317 PBP1_ABC_sugar_binding 20.1 3.9E+02 0.0085 23.5 6.8 34 122-155 187-224 (275)
No 1
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=100.00 E-value=1.5e-85 Score=610.53 Aligned_cols=220 Identities=63% Similarity=1.057 Sum_probs=213.2
Q ss_pred CCCcccCCcHHHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCch
Q 021180 7 TAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPY 86 (316)
Q Consensus 7 ~~~~~l~~ke~~i~~LLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~ 86 (316)
.++++|+++++++++||++|+||||++||++|++||||+|.||+|||||+|||++|++|+++|++++++++|||||||++
T Consensus 3 ~~~~~~~~~~~~i~~lL~agvHlG~~~~np~M~~YIy~~r~dGi~IIdL~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr~~ 82 (249)
T PTZ00254 3 SGPKVLTPKEDDIKKMLACKCHIGTKNLENAMKKYVYKRTKEGVHIINLAKTWEKLKLAARVIAAIENPADVVVVSSRPY 82 (249)
T ss_pred CCcccCCCCHHHHHHHHhcCceeccCcCCCcccccEecccCCCCEEEcHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCHH
Confidence 35789999999999999999999999999999999999877899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEec
Q 021180 87 GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (316)
Q Consensus 87 ~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP 166 (316)
++++|+|||++||++||++||+||+||||++.+|++||+|||+||+.|||||+||+++||||||||||||||++||||||
T Consensus 83 ~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTds~p~~VDy~IP 162 (249)
T PTZ00254 83 GQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPRTDHQAIREASYVNIPVIALCDTDSPLEYVDIAIP 162 (249)
T ss_pred HHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCCCCcccCceeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhcCCCCCCCccceeecccccCcccccchhHHHHhhhh
Q 021180 167 ANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETAAID 226 (316)
Q Consensus 167 ~NndS~~SI~Li~~lLaraVl~~rG~i~~~~~w~v~~dl~fyrdpee~e~~e~~~~~~~~ 226 (316)
|||||.+||+||||+|+|+|+++||+++|+++|+|||||||||||||+|++|+++++..+
T Consensus 163 ~Ndds~~SI~li~~lLar~Vl~~rG~~~r~~~~~v~~d~f~~r~~~~~~~~~~~~~~~~~ 222 (249)
T PTZ00254 163 CNNRGKESIALMYWLLAREVLRLRGTLPRDEEWDVMVDLFFWRDPEEAEEKEEAAAETAG 222 (249)
T ss_pred CCCchHHHHHHHHHHHHHHHHHhhCccccCCCCCcCceeccccChhhhhhHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999887664443
No 2
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=100.00 E-value=2.1e-74 Score=520.73 Aligned_cols=195 Identities=56% Similarity=0.972 Sum_probs=192.2
Q ss_pred cHHHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHH
Q 021180 15 KEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKF 94 (316)
Q Consensus 15 ke~~i~~LLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kf 94 (316)
+++++++||+||+||||++|||+|++||||+|+||+|||||+|||++|++|+++|.++. +++|||||||++++++|++|
T Consensus 2 ~~~~i~~ll~agvH~Gh~~~np~M~~yI~~~r~~gi~IIdL~kT~~~L~~A~~~i~~i~-~~~ILfVgtk~~~~~~V~~~ 80 (196)
T TIGR01012 2 KLVPVDKYLAAGVHIGTQNKTKDMEKFIYKVRSDGLYVLDLRKTDERLRVAAKFLVRIE-PEDILVVSARIYGQKPVLKF 80 (196)
T ss_pred ccccHHHHHhCCeecCCCcCCCCCccceeeecCCCCEEEcHHHHHHHHHHHHHHHHHhh-CCeEEEEecCHHHHHHHHHH
Confidence 56799999999999999999999999999999889999999999999999999999998 99999999999999999999
Q ss_pred HHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchh
Q 021180 95 AKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHS 174 (316)
Q Consensus 95 A~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~S 174 (316)
|+++|++||++||+||+||||.+..|++||+|||+||+.|++||+||+++||||||||||||||++|||||||||||.+|
T Consensus 81 A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~dp~~vdypIP~Ndds~~S 160 (196)
T TIGR01012 81 AKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRADHQALKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGRHS 160 (196)
T ss_pred HHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCCCCccCCEEECCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCccceeecccccC
Q 021180 175 IGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 210 (316)
Q Consensus 175 I~Li~~lLaraVl~~rG~i~~~~~w~v~~dl~fyrd 210 (316)
|.|+||+|+|+|+++||+++++++|+||||+|||||
T Consensus 161 i~li~~lla~ail~~~g~~~~~~~~~~~~d~f~~~~ 196 (196)
T TIGR01012 161 LALIYWLLAREILRMRGTISRDQDWDVMYEEFFYRD 196 (196)
T ss_pred HHHHHHHHHHHHHHhhCccCCCCCCccChhhhcccC
Confidence 999999999999999999999999999999999997
No 3
>KOG0830 consensus 40S ribosomal protein SA (P40)/Laminin receptor 1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-73 Score=523.50 Aligned_cols=223 Identities=57% Similarity=0.981 Sum_probs=198.9
Q ss_pred CCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccC
Q 021180 34 CDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFT 113 (316)
Q Consensus 34 ~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLT 113 (316)
++++|++|||++|+||||||||++||+||.+|+|.|++|+|+++|.++|+|+++||+|+|||.++|+++|+|||+||+||
T Consensus 1 ~~~~~~~y~~~~~~d~~~i~~~~~twekl~~aar~i~aienp~dv~v~ssr~~gqravlkfa~~tgatpiag~ftpg~ft 80 (254)
T KOG0830|consen 1 LNFQMEQYIYKRRSDGIYIINLGRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFT 80 (254)
T ss_pred CCcccccccccccCCceEEeeccccHHHHHHHHHHHhhccCccceEEEccCCcchhHHHHHHHhhCCCcccccccccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHHHHHHHHhhcCC
Q 021180 114 NQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 193 (316)
Q Consensus 114 N~~~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lLaraVl~~rG~i 193 (316)
||+|.+|+|||||||+|||.|||+|+|++++|+|||+||||||++++||++|||||||.|||+++||+|+|+||+|||++
T Consensus 81 n~iq~~f~epr~lvvtdpr~d~q~~~E~s~~n~p~ialcnTDSpL~~VDIAIPcNNKG~hSVgl~ww~LareVLrmrgti 160 (254)
T KOG0830|consen 81 NQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLCYVDIAIPCNNKGAHSVGVMWWMLAREVLRMRGTI 160 (254)
T ss_pred hHHHHhhcCCceeeecCcccccchhhhhhhcCCceEEEecCCCccceeeeeeecCCCCcccchhhhhhhhHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCccceeecccccCcccccchhHHHHhhhhhhhhhc-ccCCCCCCCCCCccc-CCCCCCCCCC
Q 021180 194 RP-GHKWDVMVDLFFYREPEETKQAEEEETAAIDYATAEY-NTNLTSGDQWPSQIA-DGGWAGGEVQ 257 (316)
Q Consensus 194 ~~-~~~w~v~~dl~fyrdpee~e~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~ 257 (316)
++ .++|++||||||||||||+|++||+.+.. ++-.+++ ..-..++.+|..... .+.|.+....
T Consensus 161 s~~~~~~~~m~dl~FyrDpeE~e~eeqAa~~k-a~t~eefqge~ta~a~eftatq~~vadw~e~~q~ 226 (254)
T KOG0830|consen 161 SRLQHPWEVMPDLYFYRDPEETEKEEQAAAEK-AVTKEEFQGEWTAPAPEFTATQPEVADWSEGMQV 226 (254)
T ss_pred hhhccchhhcCCcccccCccccchhhhcccch-hhcccccccccccCCccccccCcccccccccccc
Confidence 97 99999999999999999999966654322 2222222 001124556654333 6667766544
No 4
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=100.00 E-value=5e-70 Score=494.86 Aligned_cols=195 Identities=41% Similarity=0.704 Sum_probs=190.6
Q ss_pred cHHHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHH
Q 021180 15 KEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKF 94 (316)
Q Consensus 15 ke~~i~~LLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kf 94 (316)
+..++++||++|+||||+.+||+|++||||+|+||+|||||+|||++|++|+++|..+ ++++|||||||++++++|++|
T Consensus 8 ~~v~i~~ll~ag~H~Gh~~~np~Mk~yIyg~r~~gi~IIdL~kT~~~L~~A~~~i~~~-~~~~ILfVgTk~~~~~~v~k~ 86 (204)
T PRK04020 8 LLVPLEEYLAAGVHIGTQQKTKDMERFIYRVRPDGLYVLDVRKTDERIRIAAKFLSRY-EPEKILVVSSRQYGQKPVQKF 86 (204)
T ss_pred ceeeHHHHHhCCeEcCCCcCCCCCcccEeeecCCCCEEEcHHHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHH
Confidence 3467999999999999999999999999999988999999999999999999999998 789999999999999999999
Q ss_pred HHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchh
Q 021180 95 AKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHS 174 (316)
Q Consensus 95 A~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~S 174 (316)
|+++|++||++||+||+|||++..+|++||+|||+||+.|++||+||+++||||||||||||||++|||||||||||.+|
T Consensus 87 A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~dp~~VdypIP~Ndds~~S 166 (204)
T PRK04020 87 AEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNLTSNVDLVIPTNNKGRKA 166 (204)
T ss_pred HHHhCCeeecCccCCCcCcCcchhccCCCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCCCcccCceeECCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCccceeecccccC
Q 021180 175 IGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE 210 (316)
Q Consensus 175 I~Li~~lLaraVl~~rG~i~~~~~w~v~~dl~fyrd 210 (316)
|+|++|+|+++|+++||+++++++|+||+|+|++|.
T Consensus 167 I~li~~ll~~aIl~~kg~~~~~~~~~v~~~~f~~~~ 202 (204)
T PRK04020 167 LALVYWLLAREILRERGEIKPDEDLPVPVEDFETKL 202 (204)
T ss_pred HHHHHHHHHHHHHHhhCccCCCCCCCcCHHHHhhhh
Confidence 999999999999999999999999999999999985
No 5
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-63 Score=456.03 Aligned_cols=178 Identities=34% Similarity=0.535 Sum_probs=168.7
Q ss_pred HHHHHHHHHcCceeccc--cCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHH
Q 021180 16 EADIQMMLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVL 92 (316)
Q Consensus 16 e~~i~~LLaAgvHlG~~--~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~ILfVstr~~~q~aV~ 92 (316)
.+++++||+||+||||+ +|||+|++|||+.| ||||||||.||+++|..|+++|..+ +++++|||||||.|++++|+
T Consensus 3 ~vsm~~lLeAGvHfGhqtr~wnpkm~~fIf~~R-ngihIIDL~kT~~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~ 81 (252)
T COG0052 3 VVSMKQLLEAGVHFGHQTRRWNPKMKPFIFGER-NGIHIIDLQKTLERLREAYKFLRRIAANGGKILFVGTKKQAQEPVK 81 (252)
T ss_pred cCCHHHHHHcCccccccccccCCcccccceeec-CCcEEEEHHHHHHHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHH
Confidence 37899999999999984 59999999999999 6999999999999999999999998 68999999999999999999
Q ss_pred HHHHHcCCceecCCccCCccCCccccc-----c----------------------------------------cCCceEE
Q 021180 93 KFAKYTHAHAIAGRHTPGTFTNQMQTS-----F----------------------------------------NEPRLLI 127 (316)
Q Consensus 93 kfA~~tGa~~I~grw~pGtLTN~~~~~-----f----------------------------------------~eP~llV 127 (316)
+||++||++||++||+|||||||.+.+ + +.||+||
T Consensus 82 ~~A~r~g~~yV~~RwLgG~LTN~~ti~~si~rl~~lE~~~~~~~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l~ 161 (252)
T COG0052 82 EFAERTGAYYVNGRWLGGMLTNFKTIRKSIKRLKELEKMEEDGFDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLF 161 (252)
T ss_pred HHHHHhCCceecCcccCccccCchhHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhcchhhccCCCCEEE
Confidence 999999999999999999999987632 2 3499999
Q ss_pred EeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHHHHHHHHhhcCCC
Q 021180 128 LTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIR 194 (316)
Q Consensus 128 V~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lLaraVl~~rG~i~ 194 (316)
|+||+.|++||+||+++||||||||||||+|+.|||+||||||+.+||.|++|+|+++|+++|+...
T Consensus 162 ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd~VD~~IP~Ndda~rsi~Li~~~lA~ai~e~r~~~~ 228 (252)
T COG0052 162 VIDPRKEKIAVKEANKLGIPVVALVDTNCDPDGVDYVIPGNDDAIRSIALIYWLLARAILEGRGGAL 228 (252)
T ss_pred EeCCcHhHHHHHHHHHcCCCEEEEecCCCCCccCceeecCCChHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998654
No 6
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=100.00 E-value=4e-57 Score=434.86 Aligned_cols=173 Identities=27% Similarity=0.374 Sum_probs=164.6
Q ss_pred HHHHHHcCceeccc--cCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHHHH
Q 021180 19 IQMMLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLKFA 95 (316)
Q Consensus 19 i~~LLaAgvHlG~~--~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~ILfVstr~~~q~aV~kfA 95 (316)
+++||++|+||||+ +|||+|++||||.|+ |+|||||.+|+.+|++|++||..+ +++++|||||||++++++|+++|
T Consensus 1 ~~~Ll~agvH~Gh~~~~wnpkM~~yIyg~R~-gihIIDL~kT~~~L~~A~~~i~~~~~~gg~iLfVgTk~~~~~~V~~~A 79 (326)
T PRK12311 1 MRQLLEAGVHFGHQSHRWNPKMAPYIFGTRN-NIHIIDLAQTVPLLHRALQAVSDTVAKGGRVLFVGTKRQAQDAVADAA 79 (326)
T ss_pred ChhHHhCCeecccCCCCCCCcccCceecccC-CcEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHH
Confidence 47899999999985 599999999999996 999999999999999999999987 89999999999999999999999
Q ss_pred HHcCCceecCCccCCccCCccccc--------------------c--------------------------cCCceEEEe
Q 021180 96 KYTHAHAIAGRHTPGTFTNQMQTS--------------------F--------------------------NEPRLLILT 129 (316)
Q Consensus 96 ~~tGa~~I~grw~pGtLTN~~~~~--------------------f--------------------------~eP~llVV~ 129 (316)
++||++||++||+|||||||.+.+ | ++||+|||+
T Consensus 80 ~~~g~~yV~~RWlgG~LTN~~ti~~si~~l~~l~~~~~~~~~~~~~kke~~~~~r~~~kl~k~l~Gi~~m~~~Pd~viv~ 159 (326)
T PRK12311 80 KRSAQYFVNSRWLGGTLTNWKTISGSIQRLRKLDEVLSSGEANGYTKKERLTLQRERDKLDRALGGIKDMGGLPDLLFVI 159 (326)
T ss_pred HHhCCeeeCCeecCcccCCHHHHHHHHHHHHHHHHHhhcCccccCCHHHHHHHHHHHHHHHHhccchhhcccCCCEEEEe
Confidence 999999999999999999998531 1 389999999
Q ss_pred CCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHHHHHHHHhhcC
Q 021180 130 DPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 192 (316)
Q Consensus 130 DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lLaraVl~~rG~ 192 (316)
||+.|++||+||+++||||||||||||||++|||||||||||.+||.|++++|+++|++++..
T Consensus 160 d~~~e~~AI~EA~kl~IPvIaivDTn~dp~~IdypIP~NDds~~si~li~~~la~ai~~g~~~ 222 (326)
T PRK12311 160 DTNKEDIAIQEAQRLGIPVAAIVDTNCDPDGITYPVPGNDDAGRAIALYCDLIARAAIDGISR 222 (326)
T ss_pred CCccchHHHHHHHHcCCCEEEEeeCCCCccccceeecCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999863
No 7
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=100.00 E-value=5.4e-57 Score=422.32 Aligned_cols=177 Identities=29% Similarity=0.398 Sum_probs=168.2
Q ss_pred cHHHHHHHHHcCceeccc--cCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHH
Q 021180 15 KEADIQMMLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAV 91 (316)
Q Consensus 15 ke~~i~~LLaAgvHlG~~--~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~ILfVstr~~~q~aV 91 (316)
+..++++||++|+||||+ +|||+|++||||.| +|+|||||.+|+.+|++|+++|..+ +++++||||||+++.+++|
T Consensus 2 ~~~~i~~Ll~agvH~Gh~~~~wnp~m~~yIyg~r-~gi~IIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~V 80 (258)
T PRK05299 2 AVVSMKQLLEAGVHFGHQTRRWNPKMKPYIFGER-NGIHIIDLQKTVPMLDEAYNFVRDVAANGGKILFVGTKKQAQEAI 80 (258)
T ss_pred CcCCHHHHHhcCcccccccCcCCCccccceeccc-CCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEECcHHHHHHH
Confidence 346799999999999985 49999999999999 6999999999999999999999997 8999999999999999999
Q ss_pred HHHHHHcCCceecCCccCCccCCccccc-----------------c-----------------------------cCCce
Q 021180 92 LKFAKYTHAHAIAGRHTPGTFTNQMQTS-----------------F-----------------------------NEPRL 125 (316)
Q Consensus 92 ~kfA~~tGa~~I~grw~pGtLTN~~~~~-----------------f-----------------------------~eP~l 125 (316)
+++|++||++||++||+||+||||.+.+ | ++||+
T Consensus 81 ~~~A~~~~~~yv~~rWlgG~LTN~~ti~~~i~~l~~l~~~~~~~~~~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~ 160 (258)
T PRK05299 81 AEEAERCGMPYVNHRWLGGMLTNFKTIRKSIKRLKELEKMEEDGTFEKLTKKEALMLTRELEKLEKSLGGIKDMGGLPDA 160 (258)
T ss_pred HHHHHHhCCeeeCCeecCeeccCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHhccCccccccCCCE
Confidence 9999999999999999999999997621 1 58999
Q ss_pred EEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHHHHHHHHhhcC
Q 021180 126 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 192 (316)
Q Consensus 126 lVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lLaraVl~~rG~ 192 (316)
|||+||..|++||+||.++||||||||||||||++|||||||||||.+||.|++++|+++|+++||.
T Consensus 161 iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~dp~~IdypIP~Ndds~~si~li~~~l~~ai~~g~~~ 227 (258)
T PRK05299 161 LFVVDPNKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLYTSKIADAILEGRQG 227 (258)
T ss_pred EEEeCCCccHHHHHHHHHhCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999984
No 8
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=100.00 E-value=2.5e-56 Score=410.39 Aligned_cols=174 Identities=29% Similarity=0.414 Sum_probs=165.7
Q ss_pred HHHHHHHHcCceeccc--cCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHH
Q 021180 17 ADIQMMLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLK 93 (316)
Q Consensus 17 ~~i~~LLaAgvHlG~~--~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~ILfVstr~~~q~aV~k 93 (316)
.++++||++|+||||+ +|||+|++||||+| +|+|||||.+|+.+|++|+++|..+ +++++|||||||++.+++|++
T Consensus 2 ~~~~~ll~ag~H~Gh~~~~wnp~m~~yIyg~r-~g~~IIdL~~T~~~L~~A~~~i~~~~~~~g~iLfV~tk~~~~~~v~~ 80 (225)
T TIGR01011 2 VSMKDLLEAGVHFGHQTRRWNPKMKPFIFGER-NGIHIIDLQKTLQLLKEAYNFVKDVAANGGKILFVGTKKQAKEIIKE 80 (225)
T ss_pred cCHHHHHHcCcccccccCcCCcccccceeeee-CCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence 3689999999999984 59999999999999 5999999999999999999999987 899999999999999999999
Q ss_pred HHHHcCCceecCCccCCccCCccccc-----------------c-----------------------------cCCceEE
Q 021180 94 FAKYTHAHAIAGRHTPGTFTNQMQTS-----------------F-----------------------------NEPRLLI 127 (316)
Q Consensus 94 fA~~tGa~~I~grw~pGtLTN~~~~~-----------------f-----------------------------~eP~llV 127 (316)
+|+++|++||++||+||+||||.+.+ | ++||+||
T Consensus 81 ~a~~~~~~yv~~rWlgG~LTN~~~i~~~i~~l~~l~~~~~~~~f~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~vi 160 (225)
T TIGR01011 81 EAERCGMFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEEDGTFDDLTKKEALMLSREKEKLEKSLGGIKDMKKLPDLLF 160 (225)
T ss_pred HHHHhCCcccCCeecCeeccCHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHhccCccccccCCCEEE
Confidence 99999999999999999999997631 1 5899999
Q ss_pred EeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHHHHHHHHhhc
Q 021180 128 LTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191 (316)
Q Consensus 128 V~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lLaraVl~~rG 191 (316)
|+||..|++||+||.++||||||||||||||++|||||||||||.+||.|++++|+++|+++|+
T Consensus 161 i~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~g~~ 224 (225)
T TIGR01011 161 VIDPVKEKIAVAEARKLGIPVVAIVDTNCDPDLVDYPIPGNDDAIRSIRLLTNLIADAVLEGKQ 224 (225)
T ss_pred EeCCCccHHHHHHHHHcCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999985
No 9
>CHL00067 rps2 ribosomal protein S2
Probab=100.00 E-value=8.4e-55 Score=401.38 Aligned_cols=177 Identities=26% Similarity=0.363 Sum_probs=168.0
Q ss_pred CCcHHHHHHHHHcCceeccc--cCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHH
Q 021180 13 SQKEADIQMMLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQR 89 (316)
Q Consensus 13 ~~ke~~i~~LLaAgvHlG~~--~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~ILfVstr~~~q~ 89 (316)
.|...++++||++|+||||+ +|||+|++||||+| ||+|||||.+|+.+|++|+++|..+ +++++|||||||++.++
T Consensus 4 ~~~~~~i~~Ll~a~~h~Gh~~~~~np~m~~yIyg~r-~g~~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~t~~~~~~ 82 (230)
T CHL00067 4 RMWNINLEEMLEAGVHFGHQTRKWNPKMAPYIYAER-NGIHIINLVQTARFLSEACDLVFDAASKGKKFLFVGTKKQAAD 82 (230)
T ss_pred cccccCHHHHHhcCeEeccCcCcCCCchhhhhhccc-CCcEEEcHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHH
Confidence 34557899999999999986 69999999999999 5999999999999999999999998 89999999999999999
Q ss_pred HHHHHHHHcCCceecCCccCCccCCccccc---------------------------------------c-------cCC
Q 021180 90 AVLKFAKYTHAHAIAGRHTPGTFTNQMQTS---------------------------------------F-------NEP 123 (316)
Q Consensus 90 aV~kfA~~tGa~~I~grw~pGtLTN~~~~~---------------------------------------f-------~eP 123 (316)
+|+++|+++|++||++||+||+||||.+.+ | ++|
T Consensus 83 ~v~~~a~~~~~~yv~~rWigG~LTN~~~i~~~i~~~~~l~~~~~~~~~~~~~kk~~~~~~~~~~kl~k~~~Gi~~m~~~P 162 (230)
T CHL00067 83 LVASAAIRARCHYVNKRWLGGMLTNWSTTKTRLQKLRDLRMEEKTGLFNRLPKKEAAILKRQLSRLEKYLGGIKYMTKLP 162 (230)
T ss_pred HHHHHHHHhCCcCccCcccCCcccCHHHHHHHHHHHHHHHHHhhccchhcccHhHHHHHHHHHHHHHHhhccccccccCC
Confidence 999999999999999999999999998631 1 689
Q ss_pred ceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHHHHHHHHhh
Q 021180 124 RLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190 (316)
Q Consensus 124 ~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lLaraVl~~r 190 (316)
++|||+||..|++||+||.++||||||||||||||++|||||||||||.+||.|++++|+++|++++
T Consensus 163 ~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~G~ 229 (230)
T CHL00067 163 DIVIIIDQQEEYTALRECRKLGIPTISILDTNCDPDLADIPIPANDDAIASIKLILNKLTTAICEGR 229 (230)
T ss_pred CEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCCccccceeeecCCchHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999875
No 10
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=100.00 E-value=1.2e-54 Score=389.70 Aligned_cols=166 Identities=43% Similarity=0.666 Sum_probs=159.8
Q ss_pred HHHcCceecccc--CCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHc
Q 021180 22 MLAAEVHLGTKN--CDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYT 98 (316)
Q Consensus 22 LLaAgvHlG~~~--~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~ILfVstr~~~q~aV~kfA~~t 98 (316)
||++|+|+||+. |||+|++||||+| ||+|||||++|+.+|++|+++|..+ .++++|||||||++.+++|+++|+++
T Consensus 1 ll~ag~h~G~~~~~wnp~m~~yiyg~r-~~~~Iidl~~T~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~ 79 (193)
T cd01425 1 LLEAGVHLGHKTRRWNPKMKPYIYGER-NGIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERT 79 (193)
T ss_pred CCccceEeCCCcCCCCccchhheeccc-CCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 689999999865 7999999999999 6999999999999999999999998 78999999999999999999999999
Q ss_pred CCceecCCccCCccCCcccc------------------------cccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecC
Q 021180 99 HAHAIAGRHTPGTFTNQMQT------------------------SFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDT 154 (316)
Q Consensus 99 Ga~~I~grw~pGtLTN~~~~------------------------~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DT 154 (316)
|++|+++||+||+||||.+. .+++||+|||+||..|+++|+||+++||||||||||
T Consensus 80 ~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dt 159 (193)
T cd01425 80 GSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDT 159 (193)
T ss_pred CCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecC
Confidence 99999999999999999876 468999999999999999999999999999999999
Q ss_pred CCCCCcceEEecCCCCCchhHHHHHHHHHHHHHH
Q 021180 155 DSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQ 188 (316)
Q Consensus 155 ds~~~~VD~pIP~NndS~~SI~Li~~lLaraVl~ 188 (316)
||++++|||||||||||.+|+.|++++|+++|++
T Consensus 160 n~~~~~i~ypIP~Nd~s~~si~li~~~l~~ai~~ 193 (193)
T cd01425 160 NCDPDLIDYPIPANDDSIRSIALILWLLARAILE 193 (193)
T ss_pred CCCCccceEEeecCCchHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999974
No 11
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=100.00 E-value=1.9e-51 Score=373.87 Aligned_cols=168 Identities=39% Similarity=0.579 Sum_probs=157.1
Q ss_pred HHHcCceeccc--cCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHc
Q 021180 22 MLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYT 98 (316)
Q Consensus 22 LLaAgvHlG~~--~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~ILfVstr~~~q~aV~kfA~~t 98 (316)
||++|+||||+ +|||+|++||||+| +|+|||||.+|+++|++|+++|..+ +++++||||||+++.+++|+++|+++
T Consensus 1 Ll~a~~HlG~~~~~~n~~m~~yI~g~r-~g~~IidL~kT~~~L~~A~~~i~~i~~~~~~ILfV~t~~~~~~~v~~~a~~~ 79 (211)
T PF00318_consen 1 LLKAGVHLGHKKSRWNPKMKPYIYGKR-NGIHIIDLEKTLEQLRKALKFIKSIAKNGGKILFVGTKPQASKIVKKFAKRT 79 (211)
T ss_dssp HHHHTTTSCBSSSSSSGGGGGGEEEEE-TTEEEETHHHHHHHHHHHHHHHHHHHTTTGGEEEEECSTTHHHHHHHHHHHH
T ss_pred CcccceecCCCcCCCCCCcccceeccc-CceEEEEHHHHHHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHh
Confidence 79999999997 59999999999999 6999999999999999999999998 89999999999999999999999999
Q ss_pred CCceecCCccCCccCCccccc---------------------------------c-------cCCceEEEeCCCCCchhH
Q 021180 99 HAHAIAGRHTPGTFTNQMQTS---------------------------------F-------NEPRLLILTDPRTDHQPI 138 (316)
Q Consensus 99 Ga~~I~grw~pGtLTN~~~~~---------------------------------f-------~eP~llVV~DP~~d~qaI 138 (316)
|++|+++||+||+||||.+.+ | +.||+|||+||..|+++|
T Consensus 80 ~~~yi~~rWi~G~LTN~~~i~~~i~~l~~l~~~~~~~kk~~~~~~~~~~kl~k~~~Gi~~l~~~P~~vii~~~~~~~~~i 159 (211)
T PF00318_consen 80 GSFYINERWIGGTLTNWKTIKKSIKKLKKLEKLFKLTKKENAKLKKKYQKLKKYFGGIKNLKKLPDLVIILDPNKNKNAI 159 (211)
T ss_dssp TCEEEESS-STTTTTTTTHCHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHCTTTTTCSSSBSEEEESSTTTTHHHH
T ss_pred CCCccCceecCcccCcHHHHHHHHHHHHHHHHhhhccchhhhhhHHHHHHhhhhhHhhhcccccCcEEEEecccccchhH
Confidence 999999999999999999652 1 469999999999999999
Q ss_pred HHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHHHHHHHHhh
Q 021180 139 KEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190 (316)
Q Consensus 139 ~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lLaraVl~~r 190 (316)
+||.++||||||||||||++++|||||||||||..||.|++++|+++|+++|
T Consensus 160 ~Ea~~l~IP~i~i~Dtn~~~~~i~ypIp~N~~s~~si~~i~~~l~~ai~~g~ 211 (211)
T PF00318_consen 160 REANKLNIPTIAIVDTNCNPSLIDYPIPANDDSIKSIYLILNLLAKAILEGK 211 (211)
T ss_dssp HHHHHTTS-EEEEESTTS-GTTSSEEEES-SSSHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCceEEEeecCCCCccccceEeecCCccHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999875
No 12
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-48 Score=356.17 Aligned_cols=182 Identities=26% Similarity=0.373 Sum_probs=169.0
Q ss_pred cccCCcH-HHHHHHHHcCceecccc--CCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCc
Q 021180 10 RQLSQKE-ADIQMMLAAEVHLGTKN--CDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARP 85 (316)
Q Consensus 10 ~~l~~ke-~~i~~LLaAgvHlG~~~--~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~ILfVstr~ 85 (316)
+.++..+ .+|++|+.+|+||||+. ||+.|++||||+|. |||||||+||..+|++|++|++++ ..+|.||||+||+
T Consensus 40 d~fn~~~~~~v~~L~~agvHlGh~t~~wn~~m~pyiyG~R~-Gi~IIdLdqT~~~Lr~A~~fVa~vA~r~GiILFv~tn~ 118 (251)
T KOG0832|consen 40 DYFNVPELISVEELFNAGVHLGHKTGKWNPRMKPYIYGKRL-GIHIIDLDQTASYLRRALNFVAHVAHRGGIILFVGTNN 118 (251)
T ss_pred hhhcchhhccHHHHHhccccccccccccCcccchhhccccc-CcEEEecHHHHHHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 3445433 78999999999999864 99999999999996 999999999999999999999999 7889999999999
Q ss_pred hhHHHHHHHHHHcCCceecCCccCCccCCccccc---------------c---cCCceEEEeCCCCCchhHHHhhhcCCC
Q 021180 86 YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTS---------------F---NEPRLLILTDPRTDHQPIKEAALGNIP 147 (316)
Q Consensus 86 ~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~---------------f---~eP~llVV~DP~~d~qaI~EAs~lnIP 147 (316)
...+.|.+.|+++|+++++.+|.||+|||+.+.. | ..||+|||+|+.++|.||.||.|++||
T Consensus 119 ~~~~~ve~aA~r~~gy~~~~~w~~G~lTN~~~l~g~~~~~~~~~pd~~~f~~t~~~D~vvvln~~e~~sAilEA~K~~IP 198 (251)
T KOG0832|consen 119 GFKDLVERAARRAGGYSHNRKWLGGLLTNARELFGALVRKFLSLPDALCFLPTLTPDLVVVLNPEENHSAILEAAKMAIP 198 (251)
T ss_pred chHHHHHHHHHHhcCceeeeeeccceeecchhhcccccccccCCCcceeecccCCcceeEecCcccccHHHHHHHHhCCC
Confidence 9999999999999999999999999999997531 1 468999999999999999999999999
Q ss_pred EEEEecCCCCCCcceEEecCCCCCchhHHHHHHHHHHHHHHhhcC
Q 021180 148 TIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 192 (316)
Q Consensus 148 tIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lLaraVl~~rG~ 192 (316)
||||+||||+|++||||||+||||..|+.|++.+|.++|.+++..
T Consensus 199 TIgIVDtN~~P~liTYpVPaNDDs~~sv~f~~~l~k~ai~~g~~~ 243 (251)
T KOG0832|consen 199 TIGIVDTNCNPELITYPVPANDDSPASVEFILNLLKRAIARGKQK 243 (251)
T ss_pred eEEEecCCCCccceeeccCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998753
No 13
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=96.44 E-value=0.056 Score=52.18 Aligned_cols=146 Identities=19% Similarity=0.217 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCc-------cCC----c--------
Q 021180 56 GKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGT-------FTN----Q-------- 115 (316)
Q Consensus 56 ~kT~ekL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGt-------LTN----~-------- 115 (316)
....+.|..++..+.. ++++++|+++|...-+.-++...+.....+.+...-+.|. +.+ -
T Consensus 38 ~~~~~~I~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~~~ed~~~~~~ 117 (296)
T PRK12570 38 EKVLPQIAQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVEGAEDDPELGA 117 (296)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhcccccCCcHHHHH
Confidence 3445667777777765 5899999999998766555554333332222211111111 111 0
Q ss_pred ---ccccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-cceEEecCC---C--------CCchhH
Q 021180 116 ---MQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPAN---N--------KGKHSI 175 (316)
Q Consensus 116 ---~~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~N---n--------dS~~SI 175 (316)
....+.+-|++|++...-+ ..+++.|+..|.+||+|+.. ++++. ..|+.|... . ++..|.
T Consensus 118 ~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~aD~~I~~~~g~E~~~~st~~~s~taq 197 (296)
T PRK12570 118 QDLKAIGLTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIADIAISPVVGPEVLTGSTRLKSGTAQ 197 (296)
T ss_pred HHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEeeCcCCccccccchHHHHHHH
Confidence 0012467799888875554 36789999999999999865 44443 578877521 1 345688
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCccceeec
Q 021180 176 GCLFWLLARMVLQMRGTIRPGHKWDVMVDL 205 (316)
Q Consensus 176 ~Li~~lLaraVl~~rG~i~~~~~w~v~~dl 205 (316)
.+++.+|+..+....|+..+.. |+|+
T Consensus 198 k~vLd~L~t~~~~r~Gk~~~n~----mvd~ 223 (296)
T PRK12570 198 KMVLNMLSTASMIRLGKSYQNL----MVDV 223 (296)
T ss_pred HHHHHHHHHHHHHhcchhhcCe----EEEe
Confidence 8899999999999999887654 8886
No 14
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=96.11 E-value=0.045 Score=51.62 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCce-----ecCCccCCcc------CCcc-------
Q 021180 56 GKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHA-----IAGRHTPGTF------TNQM------- 116 (316)
Q Consensus 56 ~kT~ekL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~-----I~grw~pGtL------TN~~------- 116 (316)
.+..+.|..++..+.. ++++++|.++|...-+.-+++..++...-+- +.+-..+|.- -|..
T Consensus 29 ~~~l~~I~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~ 108 (257)
T cd05007 29 EAALPQIARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGA 108 (257)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHH
Confidence 3445667777777765 5899999999998777656554333322111 1111122211 1111
Q ss_pred ----cccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-cceEEecCCC-----------CCchhH
Q 021180 117 ----QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANN-----------KGKHSI 175 (316)
Q Consensus 117 ----~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~Nn-----------dS~~SI 175 (316)
...+.+-|++|++...-. ..+++.|++.|+|||+|+.. ++++. ..|+.|-... ++..+.
T Consensus 109 ~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I~~~~g~E~~~~st~~~s~~aq 188 (257)
T cd05007 109 ADLQAINLTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIALITGPEVVAGSTRLKAGTAQ 188 (257)
T ss_pred HHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEEcCCCCccccCccccccHHHH
Confidence 122467788888864433 56889999999999999854 44443 4677765432 244577
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCccceeec
Q 021180 176 GCLFWLLARMVLQMRGTIRPGHKWDVMVDL 205 (316)
Q Consensus 176 ~Li~~lLaraVl~~rG~i~~~~~w~v~~dl 205 (316)
.+++.+|.-.+....|++-.. .|+|+
T Consensus 189 k~vLn~L~t~~~~~~g~v~~n----~mvd~ 214 (257)
T cd05007 189 KLALNMLSTAVMIRLGKVYGN----LMVDV 214 (257)
T ss_pred HHHHHHHHHHHHHHcchHHHH----HHHHh
Confidence 888999999998888887553 47776
No 15
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=96.02 E-value=0.13 Score=49.62 Aligned_cols=147 Identities=16% Similarity=0.205 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCcc-----------CCc-------
Q 021180 55 LGKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTF-----------TNQ------- 115 (316)
Q Consensus 55 L~kT~ekL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtL-----------TN~------- 115 (316)
+.+..+.|..++..+.. +.++++|.|+|....+.-+++.+++....+-+....+.|.+ .|.
T Consensus 41 v~~~l~~I~~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~~~~ 120 (299)
T PRK05441 41 VEKALPQIAAAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELG 120 (299)
T ss_pred HHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChHHHH
Confidence 45566777777777765 58999999999998777666655544322211111122211 110
Q ss_pred ---c-cccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-cceEEecCCC-----------CCchh
Q 021180 116 ---M-QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANN-----------KGKHS 174 (316)
Q Consensus 116 ---~-~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~Nn-----------dS~~S 174 (316)
. ...+..-|++|++...-. ..+++.|+..|.+||+|++. ++++. +.|+.|.... ++..+
T Consensus 121 ~~~l~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~~I~~~~g~E~~~~st~~~s~ta 200 (299)
T PRK05441 121 AADLKAINLTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADIAIEVVVGPEVLTGSTRMKAGTA 200 (299)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEcCCCCccccccccccchhH
Confidence 0 122567788888864333 56889999999999999964 44443 4777775432 24457
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCccceeec
Q 021180 175 IGCLFWLLARMVLQMRGTIRPGHKWDVMVDL 205 (316)
Q Consensus 175 I~Li~~lLaraVl~~rG~i~~~~~w~v~~dl 205 (316)
..+++.+|+..+....|+.-.. .|+|+
T Consensus 201 qk~iLn~lst~~~~~~gkv~~n----~mvd~ 227 (299)
T PRK05441 201 QKLVLNMISTGVMIRLGKVYGN----LMVDV 227 (299)
T ss_pred HHHHHHHHHHHHHHHccHHHHH----HHHHh
Confidence 7888999999988888875432 36665
No 16
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=95.50 E-value=0.19 Score=48.43 Aligned_cols=147 Identities=16% Similarity=0.161 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHH---HHHcCCce--ecCCccCCc---cCCcc---------
Q 021180 55 LGKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKF---AKYTHAHA--IAGRHTPGT---FTNQM--------- 116 (316)
Q Consensus 55 L~kT~ekL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kf---A~~tGa~~--I~grw~pGt---LTN~~--------- 116 (316)
+....+.+.+++..+.. ++++++|.|+|...-+.=+++.. .-+.|..+ +.+-..+|- +++..
T Consensus 36 v~~~l~~I~~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~iaGg~~a~~~~~e~~Ed~~~~~ 115 (291)
T TIGR00274 36 IESVLPDIAAAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGGECAILHAVEGAEDSTEAG 115 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHhcCChHHHhccchhhhcchHHH
Confidence 44556677778877765 58999999999886554333332 22234322 112122331 11111
Q ss_pred -----cccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCC-CcceEEecCC-----------CCCchh
Q 021180 117 -----QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPAN-----------NKGKHS 174 (316)
Q Consensus 117 -----~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~-~~VD~pIP~N-----------ndS~~S 174 (316)
...+.+=|++|++...-+ ..+++.|++.|++||+|+.. ++++ ++.|+.|... -++.-+
T Consensus 116 ~~dl~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~~~g~E~~~~st~~~s~~a 195 (291)
T TIGR00274 116 ANDLQNIHLTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIETIVGPEILTGSSRLKAGTA 195 (291)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEecCCCCccccccchhhHHHH
Confidence 113567788888875444 45788999999999999853 4443 4577777542 134566
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCccceeec
Q 021180 175 IGCLFWLLARMVLQMRGTIRPGHKWDVMVDL 205 (316)
Q Consensus 175 I~Li~~lLaraVl~~rG~i~~~~~w~v~~dl 205 (316)
..+++.+|+..+....|+..... |+|+
T Consensus 196 qk~iLd~L~t~~~~~~gk~~~n~----mvd~ 222 (291)
T TIGR00274 196 QKMVLNMLSTASMIKLGKVYENL----MVDV 222 (291)
T ss_pred HHHHHHHHHHHHHHhcchhhcCe----EEee
Confidence 77789999999988888876644 8886
No 17
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=94.22 E-value=1.5 Score=39.49 Aligned_cols=109 Identities=18% Similarity=0.171 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHH---------cCCceecCCccCC-ccCC------------
Q 021180 58 TWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKY---------THAHAIAGRHTPG-TFTN------------ 114 (316)
Q Consensus 58 T~ekL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA~~---------tGa~~I~grw~pG-tLTN------------ 114 (316)
-.+.|.+|++.|.. +.++++|.|+|...-+.-+ ..|+.. .|-..+.. ... .++.
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i~G~G~S~~~A-~~~a~~l~~~~~~~r~g~~~~~~--~d~~~~~~~~~d~~~~~~~~ 102 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSCGNGGSHCDA-MHFAEELTGRYRENRPGYPAIAI--SDVSHLSCVSNDFGYDYVFS 102 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHH-HHHHHHhcccccCCCCCceEEec--CcHHHHhhhhccCCHHHHHH
Confidence 34678899999886 5899999999887544322 234322 12111111 000 1110
Q ss_pred -cccccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCC-CcceEEecCCC
Q 021180 115 -QMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPANN 169 (316)
Q Consensus 115 -~~~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~-~~VD~pIP~Nn 169 (316)
+.....++-|++|++...-+ ..+++.|+..|+|||+|+.. ++++ ++.|+.|..+.
T Consensus 103 ~~~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~~ 164 (192)
T PRK00414 103 RYVEAVGREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVPH 164 (192)
T ss_pred HHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 11122467799988874433 45778899999999999975 5554 35677776665
No 18
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=94.06 E-value=1.3 Score=42.31 Aligned_cols=136 Identities=16% Similarity=0.100 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHH-hhCC-CcEEEEccCchhHHHHHHHHHH---cCCceecCCccCCccCCcccccccCCceEEEe
Q 021180 55 LGKTWEKLQMAARVIVA-IENP-GDIIVQSARPYGQRAVLKFAKY---THAHAIAGRHTPGTFTNQMQTSFNEPRLLILT 129 (316)
Q Consensus 55 L~kT~ekL~~Aa~~I~~-I~n~-~~ILfVstr~~~q~aV~kfA~~---tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~ 129 (316)
+++|...|..-+.-+.. +.+. ++|.|+|...... +...|+.+ .|-..+.- .+..+.......+.+-|++|++
T Consensus 25 ~~~t~~~~~~~l~~~~~~l~~a~~~I~i~G~G~S~~-~a~~~~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~d~~I~i 101 (326)
T PRK10892 25 LAELDQYINQDFTLACEKMFWCKGKVVVMGMGKSGH-IGRKMAATFASTGTPSFFV--HPGEAAHGDLGMVTPQDVVIAI 101 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHhHH-HHHHHHHHHhcCCceeEEe--ChHHhhccccccCCCCCEEEEE
Confidence 45565555553333443 3343 6898988874332 33334333 33322110 1111111112335667888888
Q ss_pred CCCCC----chhHHHhhhcCCCEEEEecCC-CCCC-cceEEe--cC-------CC---CCchhHHHHHHHHHHHHHHhhc
Q 021180 130 DPRTD----HQPIKEAALGNIPTIAFCDTD-SPMR-YVDIGI--PA-------NN---KGKHSIGCLFWLLARMVLQMRG 191 (316)
Q Consensus 130 DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~~-~VD~pI--P~-------Nn---dS~~SI~Li~~lLaraVl~~rG 191 (316)
.-.-+ ..+++.|+..|+|||+|++.. |++. +-|+.| ++ +. +|.-+..++...|...+++.+|
T Consensus 102 S~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~s~ia~~~~~dsL~~~~l~~~g 181 (326)
T PRK10892 102 SNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADIHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLKARG 181 (326)
T ss_pred eCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEeCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 74333 568899999999999999864 4443 455555 32 11 2222234445555556666665
Q ss_pred CC
Q 021180 192 TI 193 (316)
Q Consensus 192 ~i 193 (316)
..
T Consensus 182 ~~ 183 (326)
T PRK10892 182 FT 183 (326)
T ss_pred CC
Confidence 43
No 19
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=93.92 E-value=1.5 Score=38.25 Aligned_cols=86 Identities=20% Similarity=0.103 Sum_probs=48.9
Q ss_pred hhCCCcEEEEccCchhHHHHHHHHHH---cCCceecCCccCCccCCcccccccCCceEEEeCCCCC----chhHHHhhhc
Q 021180 72 IENPGDIIVQSARPYGQRAVLKFAKY---THAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (316)
Q Consensus 72 I~n~~~ILfVstr~~~q~aV~kfA~~---tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EAs~l 144 (316)
+.+.++|.|+|...... ....|+.+ .|-.. .+....+ .....+-|++|+++-.-. ..+++.|+..
T Consensus 27 l~~a~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~---~~~~~~~----~~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~ 98 (179)
T TIGR03127 27 IIKAKRIFVAGAGRSGL-VGKAFAMRLMHLGFNV---YVVGETT----TPSIKKGDLLIAISGSGETESLVTVAKKAKEI 98 (179)
T ss_pred HHhCCEEEEEecCHHHH-HHHHHHHHHHhCCCeE---EEeCCcc----cCCCCCCCEEEEEeCCCCcHHHHHHHHHHHHC
Confidence 34557899988874331 22233333 23221 1122221 234567788888874333 3566778999
Q ss_pred CCCEEEEecCC-CCCC-cceEEe
Q 021180 145 NIPTIAFCDTD-SPMR-YVDIGI 165 (316)
Q Consensus 145 nIPtIAL~DTd-s~~~-~VD~pI 165 (316)
|+|||+|+|.. +++. +.|+.+
T Consensus 99 g~~ii~IT~~~~s~la~~ad~~l 121 (179)
T TIGR03127 99 GATVAAITTNPESTLGKLADVVV 121 (179)
T ss_pred CCeEEEEECCCCCchHHhCCEEE
Confidence 99999999864 4443 355544
No 20
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=93.73 E-value=3.4 Score=36.11 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHH-hhCCCcEEEEccCchhH---HHHHHHHHHc-----CCceecCCccCC------ccCCc--------
Q 021180 59 WEKLQMAARVIVA-IENPGDIIVQSARPYGQ---RAVLKFAKYT-----HAHAIAGRHTPG------TFTNQ-------- 115 (316)
Q Consensus 59 ~ekL~~Aa~~I~~-I~n~~~ILfVstr~~~q---~aV~kfA~~t-----Ga~~I~grw~pG------tLTN~-------- 115 (316)
.+.|.+++..|.. +.+.++|.++|...... ....+|..+. |-.. .+..+ ...|-
T Consensus 16 ~~~i~~a~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 92 (177)
T cd05006 16 AEAIEQAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPA---IALTTDTSILTAIANDYGYEEVFS 92 (177)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCce---EeccCCHHHHHHHhccCCHHHHHH
Confidence 6778888988876 57778899998874332 2222333221 1111 11111 11110
Q ss_pred --ccccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-cceEEecCC
Q 021180 116 --MQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPAN 168 (316)
Q Consensus 116 --~~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~N 168 (316)
....++.-|++|++.-.-+ ..+++.|+..|+|||+|++. ++++. +.|+.|...
T Consensus 93 ~~~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 93 RQVEALGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred HHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 1123577899998875444 45788999999999999986 44443 456655443
No 21
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=93.51 E-value=2.2 Score=37.36 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHH--HHHHHHhhCCCcEEEEccCchhHHHHHHHHHH---cCCceecCCccCCccCCcccccccCCceEEE
Q 021180 54 NLGKTWEKLQMA--ARVIVAIENPGDIIVQSARPYGQRAVLKFAKY---THAHAIAGRHTPGTFTNQMQTSFNEPRLLIL 128 (316)
Q Consensus 54 NL~kT~ekL~~A--a~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~---tGa~~I~grw~pGtLTN~~~~~f~eP~llVV 128 (316)
||.+|.+.|... -+++..|.+.++|.|+|.+.... ....++.+ .|-..+. .+..+ ...+.+-|++|+
T Consensus 10 ~l~~t~~~l~~~~l~~~~~~i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~---~~~~~----~~~~~~~D~vI~ 81 (179)
T cd05005 10 EIENVADKIDEEELDKLISAILNAKRIFVYGAGRSGL-VAKAFAMRLMHLGLNVYV---VGETT----TPAIGPGDLLIA 81 (179)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhCCeEEEEecChhHH-HHHHHHHHHHhCCCeEEE---eCCCC----CCCCCCCCEEEE
Confidence 455555543221 12222345557899998874321 22223322 2332211 11111 123466788888
Q ss_pred eCCCCC----chhHHHhhhcCCCEEEEecCCC-CCC-cceE--EecCCC
Q 021180 129 TDPRTD----HQPIKEAALGNIPTIAFCDTDS-PMR-YVDI--GIPANN 169 (316)
Q Consensus 129 ~DP~~d----~qaI~EAs~lnIPtIAL~DTds-~~~-~VD~--pIP~Nn 169 (316)
+..... ..+++.|+..|+|+|+|+|+.. ++. +.|+ .+|++.
T Consensus 82 iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~ 130 (179)
T cd05005 82 ISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAAT 130 (179)
T ss_pred EcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCcc
Confidence 874433 4477889999999999999644 442 3454 445543
No 22
>PRK13938 phosphoheptose isomerase; Provisional
Probab=93.22 E-value=1.7 Score=39.59 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCceecCC--------ccCC-ccC-------------
Q 021180 57 KTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGR--------HTPG-TFT------------- 113 (316)
Q Consensus 57 kT~ekL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~gr--------w~pG-tLT------------- 113 (316)
...+.+..++..+.. +.++++|+++|....+.-+ ..|+.+....+.-+| ...+ .+|
T Consensus 26 ~~~~~~~~~a~~~~~~l~~g~rI~i~G~G~S~~~A-~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~~nd~~~~~~~~ 104 (196)
T PRK13938 26 VLLEAARAIGDRLIAGYRAGARVFMCGNGGSAADA-QHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVFA 104 (196)
T ss_pred hhHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHH-HHHHHHcCCCccCCcCccceEEEeCChHHHHHhhccccHHHHHH
Confidence 445566666666654 6899999999987655433 345544321111111 0111 111
Q ss_pred CcccccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCC-CcceEEecCCC
Q 021180 114 NQMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPANN 169 (316)
Q Consensus 114 N~~~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~-~~VD~pIP~Nn 169 (316)
.+......+-|++|++...-+ ..+++.|+..|+|||+|++. ++++ ++.|+.|....
T Consensus 105 ~~~~~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~~ 166 (196)
T PRK13938 105 RALEGSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVPS 166 (196)
T ss_pred HHHHhcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeCC
Confidence 122234578899999975544 46788999999999999975 4444 34666554333
No 23
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=92.33 E-value=1.9 Score=39.36 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHh-hCCCcEEEEccCchh---HHHHHHHHH-----HcCCceecC--C-ccCCccCCc----------c
Q 021180 59 WEKLQMAARVIVAI-ENPGDIIVQSARPYG---QRAVLKFAK-----YTHAHAIAG--R-HTPGTFTNQ----------M 116 (316)
Q Consensus 59 ~ekL~~Aa~~I~~I-~n~~~ILfVstr~~~---q~aV~kfA~-----~tGa~~I~g--r-w~pGtLTN~----------~ 116 (316)
-+.|..|+..|... .+.++|+|+|...-+ +.+..+|.. +.|-..++- . -+=..++|- .
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql 103 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQV 103 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHH
Confidence 36788888888764 899999999986543 333333322 222222210 0 000011121 1
Q ss_pred cccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCCcc----eEEecCCCCCch
Q 021180 117 QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMRYV----DIGIPANNKGKH 173 (316)
Q Consensus 117 ~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~~V----D~pIP~NndS~~ 173 (316)
....++-|++|++...-+ ..+++.|+..|+|||+|+.. ++++... |+.|--+.++..
T Consensus 104 ~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~~~~~ 169 (196)
T PRK10886 104 RALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSA 169 (196)
T ss_pred HHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcCCCchH
Confidence 222478899998875544 34678889999999999963 4455432 655555544443
No 24
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=92.26 E-value=0.7 Score=39.22 Aligned_cols=94 Identities=19% Similarity=0.175 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCc---------cc-----------
Q 021180 59 WEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ---------MQ----------- 117 (316)
Q Consensus 59 ~ekL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~---------~~----------- 117 (316)
.+.|.+|+..|.. ++++++|.++|+..-+.-+..-+....|...+.....+...-+. ..
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLA 97 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHH
Confidence 6778899999987 58999999999986654443333333333333333333222211 10
Q ss_pred -ccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEe
Q 021180 118 -TSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFC 152 (316)
Q Consensus 118 -~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~ 152 (316)
..++.-|+||++...-+ ..++++|+..|.+||+|.
T Consensus 98 ~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 98 LYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp HTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred HcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 12578899998875444 347789999999999985
No 25
>PRK13936 phosphoheptose isomerase; Provisional
Probab=92.20 E-value=1.4 Score=39.85 Aligned_cols=106 Identities=16% Similarity=0.177 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEccCchh---HHHHHHHHHHcCCceecCCccCCccC--------------Ccc-----
Q 021180 60 EKLQMAARVIVA-IENPGDIIVQSARPYG---QRAVLKFAKYTHAHAIAGRHTPGTFT--------------NQM----- 116 (316)
Q Consensus 60 ekL~~Aa~~I~~-I~n~~~ILfVstr~~~---q~aV~kfA~~tGa~~I~grw~pGtLT--------------N~~----- 116 (316)
+.|..|+..+.. +.+.++|.++|....+ +....+|..+.|. ..+|... |-.
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~------~r~g~~~~~~~~~~~~~~~~~~d~~~~~~ 100 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFER------ERPSLPAIALTTDTSTLTAIANDYSYNEV 100 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCC------CCccceeEecCCcHHHHHHHhhcCCHHHH
Confidence 556678878776 4889999998876443 3333344333221 1122211 110
Q ss_pred -----cccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCC-CCCCc----ceEEecCCCCC
Q 021180 117 -----QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPMRY----VDIGIPANNKG 171 (316)
Q Consensus 117 -----~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~~~----VD~pIP~NndS 171 (316)
....+.=|++|++...-+ ..+++.|+..|+|+|+|++.+ +++.- .|+.|....+.
T Consensus 101 ~~~~~a~~~~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~~ 169 (197)
T PRK13936 101 FSKQVRALGQPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPAER 169 (197)
T ss_pred HHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCCCc
Confidence 112256788888864433 336788999999999999854 44443 45555444433
No 26
>PRK02947 hypothetical protein; Provisional
Probab=92.19 E-value=2.6 Score=39.43 Aligned_cols=96 Identities=18% Similarity=0.073 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCceecCC-ccCCcc--------C---Cc--------cc
Q 021180 59 WEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGR-HTPGTF--------T---NQ--------MQ 117 (316)
Q Consensus 59 ~ekL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~gr-w~pGtL--------T---N~--------~~ 117 (316)
.+.|..|+..|.. +.+.++|.|+|.+.... ....|..+.|......+ ..+..+ | +. ..
T Consensus 23 ~e~i~~aa~lla~~i~~a~~I~i~G~G~S~~-vA~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (246)
T PRK02947 23 AEAIEKAADLIADSIRNGGLIYVFGTGHSHI-LAEEVFYRAGGLAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDR 101 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHHHH-HHHHhccccccCcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHH
Confidence 3568889999886 58889999999885443 22334333331100000 111110 0 10 12
Q ss_pred ccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCC
Q 021180 118 TSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD 155 (316)
Q Consensus 118 ~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DTd 155 (316)
..+..-|++|++...-+ ..+++.|+..|+|+|+|++..
T Consensus 102 ~~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 102 YDIRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred cCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 23567789998875544 347789999999999999874
No 27
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=91.78 E-value=1.9 Score=45.16 Aligned_cols=121 Identities=15% Similarity=0.183 Sum_probs=67.9
Q ss_pred hhCCCcEEEEccCch--hHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC----chhHHHhhhcC
Q 021180 72 IENPGDIIVQSARPY--GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGN 145 (316)
Q Consensus 72 I~n~~~ILfVstr~~--~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EAs~ln 145 (316)
+.+..+|.|+++... .......+..+.+...+. -..+..|.. ........+++|++...-+ ..+++.|+..|
T Consensus 286 l~~a~~I~~~G~GsS~~aa~~a~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~dlvI~iS~SG~T~e~i~a~~~ak~~g 363 (604)
T PRK00331 286 LKKIDRIYIVACGTSYHAGLVAKYLIESLAGIPVE-VEIASEFRY-RDPVLSPKTLVIAISQSGETADTLAALRLAKELG 363 (604)
T ss_pred HhcCCEEEEEEeecHHHHHHHHHHHHHHHcCCCEE-EEehhhhhc-cCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHCC
Confidence 455677999888643 223333343333222211 112233322 1223456788888864444 45788889999
Q ss_pred CCEEEEecC-CCCC-CcceEEecCCC---------CCchhHHHHHHHHHHHHHHhhcCCC
Q 021180 146 IPTIAFCDT-DSPM-RYVDIGIPANN---------KGKHSIGCLFWLLARMVLQMRGTIR 194 (316)
Q Consensus 146 IPtIAL~DT-ds~~-~~VD~pIP~Nn---------dS~~SI~Li~~lLaraVl~~rG~i~ 194 (316)
+|||+|++. +|++ +..|+.|+.+. ++..|.-+++.+|+-.+...+|.++
T Consensus 364 a~~IaIT~~~~S~La~~aD~~l~~~~~~e~~~~~tks~~s~l~~l~lL~~~~~~~~g~~~ 423 (604)
T PRK00331 364 AKTLAICNVPGSTIARESDAVLYTHAGPEIGVASTKAFTAQLAVLYLLALALAKARGTLS 423 (604)
T ss_pred CCEEEEECCCCChhHHhcCcEEEecCcCccchhhhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999986 5555 35777777653 2233344445556655555556543
No 28
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=91.38 E-value=2.3 Score=39.65 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=53.6
Q ss_pred hhCCCcEEEEccCchhHHHHHHHHHH---cCCceecCCccCCccCCc--ccccccCCceEEEeCCCCC----chhHHHhh
Q 021180 72 IENPGDIIVQSARPYGQRAVLKFAKY---THAHAIAGRHTPGTFTNQ--MQTSFNEPRLLILTDPRTD----HQPIKEAA 142 (316)
Q Consensus 72 I~n~~~ILfVstr~~~q~aV~kfA~~---tGa~~I~grw~pGtLTN~--~~~~f~eP~llVV~DP~~d----~qaI~EAs 142 (316)
|.+-++|.|+|.+.... +.+.|+.+ .|-..+. ... ...+ ......+-|++|++.-..+ ..+++.|+
T Consensus 125 i~~a~~I~i~G~G~s~~-~A~~~~~~l~~~g~~~~~---~~d-~~~~~~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak 199 (278)
T PRK11557 125 LRSARRIILTGIGASGL-VAQNFAWKLMKIGINAVA---ERD-MHALLATVQALSPDDLLLAISYSGERRELNLAADEAL 199 (278)
T ss_pred HhcCCeEEEEecChhHH-HHHHHHHHHhhCCCeEEE---cCC-hHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 45667899999875322 22333333 3332211 110 0000 0113578899999874443 35788999
Q ss_pred hcCCCEEEEecCC-CCCC-cceEEecC
Q 021180 143 LGNIPTIAFCDTD-SPMR-YVDIGIPA 167 (316)
Q Consensus 143 ~lnIPtIAL~DTd-s~~~-~VD~pIP~ 167 (316)
..|++||+|+|.. +++. +.|+.|.+
T Consensus 200 ~~ga~iI~IT~~~~s~la~~ad~~l~~ 226 (278)
T PRK11557 200 RVGAKVLAITGFTPNALQQRASHCLYT 226 (278)
T ss_pred HcCCCEEEEcCCCCCchHHhCCEEEEe
Confidence 9999999999974 4443 56777764
No 29
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=91.20 E-value=2.4 Score=39.47 Aligned_cols=92 Identities=11% Similarity=0.078 Sum_probs=52.8
Q ss_pred hhCCCcEEEEccCchhH---HHHHHHHHHcCCceecCCccCCccCCc-ccccccCCceEEEeCCCCC----chhHHHhhh
Q 021180 72 IENPGDIIVQSARPYGQ---RAVLKFAKYTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPRTD----HQPIKEAAL 143 (316)
Q Consensus 72 I~n~~~ILfVstr~~~q---~aV~kfA~~tGa~~I~grw~pGtLTN~-~~~~f~eP~llVV~DP~~d----~qaI~EAs~ 143 (316)
|.+-++|.|+|...... ....+|. +.|-..+. ........ ......+-|++|++.-... ..+++.|+.
T Consensus 125 i~~a~~I~i~G~G~S~~~a~~~~~~l~-~~g~~~~~---~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~~~~~~~ak~ 200 (284)
T PRK11302 125 LTQAKKISFFGLGASAAVAHDAQNKFF-RFNVPVVY---FDDIVMQRMSCMNSSDGDVVVLISHTGRTKSLVELAQLARE 200 (284)
T ss_pred HHcCCeEEEEEcchHHHHHHHHHHHHH-hcCCceEe---cCCHHHHHHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44557899999874432 2222232 23433221 11111100 1123467788888864333 447789999
Q ss_pred cCCCEEEEecCCCCCC-cceEEecC
Q 021180 144 GNIPTIAFCDTDSPMR-YVDIGIPA 167 (316)
Q Consensus 144 lnIPtIAL~DTds~~~-~VD~pIP~ 167 (316)
.|++||+|++.++++. +.|+.|..
T Consensus 201 ~g~~vI~IT~~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 201 NGATVIAITSAGSPLAREATLALTL 225 (284)
T ss_pred cCCeEEEECCCCChhHHhCCEEEec
Confidence 9999999999777664 35676654
No 30
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.59 E-value=1.2 Score=35.55 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=51.8
Q ss_pred cEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCc--ccccccCCceEEEeCCCCCchh----HHHhhhcCCCEEE
Q 021180 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ--MQTSFNEPRLLILTDPRTDHQP----IKEAALGNIPTIA 150 (316)
Q Consensus 77 ~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~--~~~~f~eP~llVV~DP~~d~qa----I~EAs~lnIPtIA 150 (316)
+||+||.+.....-+++..+..|...+...=-+|.-.+. +....+.+|+|||+--..+|.+ -++|.+.|||++-
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 489999977777788888899998765430012322332 3445688999998866666654 4678888999874
Q ss_pred E
Q 021180 151 F 151 (316)
Q Consensus 151 L 151 (316)
.
T Consensus 81 ~ 81 (97)
T PF10087_consen 81 S 81 (97)
T ss_pred E
Confidence 4
No 31
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=90.53 E-value=2.5 Score=34.84 Aligned_cols=61 Identities=21% Similarity=0.243 Sum_probs=40.1
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCC-CcceEEecCCCC--CchhHHHHHH
Q 021180 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPANNK--GKHSIGCLFW 180 (316)
Q Consensus 120 f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~-~~VD~pIP~Nnd--S~~SI~Li~~ 180 (316)
..+-|++|++...-+ ..+++.|+..|+|+|+|++. ++++ +..|+.|..... -.+-+.+.+.
T Consensus 45 ~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~ 113 (120)
T cd05710 45 LTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYGFEIDAVEEKYLLLY 113 (120)
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEccCCcCccchHHHHHH
Confidence 456688888864433 55778889999999999986 4444 246776666554 3344444433
No 32
>PRK15482 transcriptional regulator MurR; Provisional
Probab=90.11 E-value=3.8 Score=38.57 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=34.8
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCCC-CC-CcceEEecCC
Q 021180 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDS-PM-RYVDIGIPAN 168 (316)
Q Consensus 120 f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DTds-~~-~~VD~pIP~N 168 (316)
..+-|++|++.-... ..+++.|+..|++||+|+|... ++ ++.|+.|.+.
T Consensus 180 ~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~ 234 (285)
T PRK15482 180 LKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTV 234 (285)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcC
Confidence 456688888874333 4577888999999999999754 44 3566666543
No 33
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=89.52 E-value=8.5 Score=33.16 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=35.5
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-cceEEecCCC
Q 021180 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANN 169 (316)
Q Consensus 120 f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~Nn 169 (316)
.++-|++|++...-+ ..+++.|+..|+|+|+|++. ++++. +.|+.|...+
T Consensus 77 ~~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~~~ 132 (154)
T TIGR00441 77 GQKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRVPH 132 (154)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCC
Confidence 367788888874433 45778899999999999985 55553 4666665544
No 34
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=89.40 E-value=2.5 Score=34.20 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=32.3
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCCCCC--CcceEEe
Q 021180 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSPM--RYVDIGI 165 (316)
Q Consensus 120 f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DTds~~--~~VD~pI 165 (316)
..+-|++|++...-+ ..++++|+..|+++|+|++...++ ++.|+.|
T Consensus 44 ~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l 95 (126)
T cd05008 44 LDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVL 95 (126)
T ss_pred CCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEE
Confidence 567788888864333 457889999999999999974433 2355554
No 35
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=89.28 E-value=4 Score=32.79 Aligned_cols=97 Identities=10% Similarity=0.033 Sum_probs=52.1
Q ss_pred hCCCcEEEEccCchhHHHHHHHHHHcCCceecCCcc-CCccCCcccccccCCceEEEeCCCCC----chhHHHhhhcCCC
Q 021180 73 ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHT-PGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIP 147 (316)
Q Consensus 73 ~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~-pGtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIP 147 (316)
.+.++|.|+|+.... .+...|+......-..-..+ ...+.........+-+++|+++...+ .++++.|+..|++
T Consensus 11 ~~~~~i~i~g~g~s~-~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~ 89 (139)
T cd05013 11 AKARRIYIFGVGSSG-LVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKERGAK 89 (139)
T ss_pred HhCCEEEEEEcCchH-HHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCe
Confidence 344789999987643 23344444321110000011 11111111112356688888886555 3477889999999
Q ss_pred EEEEecCCCC-C-CcceEEecCCCC
Q 021180 148 TIAFCDTDSP-M-RYVDIGIPANNK 170 (316)
Q Consensus 148 tIAL~DTds~-~-~~VD~pIP~Nnd 170 (316)
+|+|.+...+ + ++.|+.|++...
T Consensus 90 iv~iT~~~~~~l~~~~d~~i~~~~~ 114 (139)
T cd05013 90 VIAITDSANSPLAKLADIVLLVSSE 114 (139)
T ss_pred EEEEcCCCCChhHHhcCEEEEcCCC
Confidence 9999986543 3 246666655433
No 36
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=89.11 E-value=3.4 Score=37.97 Aligned_cols=75 Identities=16% Similarity=0.084 Sum_probs=47.2
Q ss_pred cccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCC-CcceEEecCCC---------CCchh---HHHHHH
Q 021180 119 SFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPANN---------KGKHS---IGCLFW 180 (316)
Q Consensus 119 ~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~-~~VD~pIP~Nn---------dS~~S---I~Li~~ 180 (316)
.+.+-|++|++...-+ ..+++.|+..|+|||+|++. ++++ ++.|+.|.... ....| .-++.-
T Consensus 44 ~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~~d~~l~~~~~~~~~~~~~~~~~s~~~~~~l~d 123 (268)
T TIGR00393 44 MVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDIKVEKEACPINLAPTTSTTLTLALGD 123 (268)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCcccccCCEEEEcCCCcccCCCCCccHHHHHHHHHHHH
Confidence 3566788888875433 45788999999999999986 4444 24666665421 11122 233334
Q ss_pred HHHHHHHHhhcCC
Q 021180 181 LLARMVLQMRGTI 193 (316)
Q Consensus 181 lLaraVl~~rG~i 193 (316)
+|...+...+|..
T Consensus 124 ~l~~~~~~~~~~~ 136 (268)
T TIGR00393 124 ALAVALMRARNFS 136 (268)
T ss_pred HHHHHHHHHHCcC
Confidence 4666777666664
No 37
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=89.05 E-value=12 Score=31.01 Aligned_cols=117 Identities=21% Similarity=0.218 Sum_probs=69.3
Q ss_pred hhCCCcEEEEccCch---hHHHHHHHHHHcC---CceecCCccCCccCCcccccccCCceEEEeCCCCC-----chhHHH
Q 021180 72 IENPGDIIVQSARPY---GQRAVLKFAKYTH---AHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD-----HQPIKE 140 (316)
Q Consensus 72 I~n~~~ILfVstr~~---~q~aV~kfA~~tG---a~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d-----~qaI~E 140 (316)
+.+-.+|.|+|+... .+..-+||.+..+ ..+....|..|.+.+ ..+-+++|++..... ..+++.
T Consensus 10 ~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~-----~~~~~~vi~is~~g~t~~~~~~~~~~ 84 (153)
T cd05009 10 LKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIAL-----VDEGTPVIFLAPEDRLEEKLESLIKE 84 (153)
T ss_pred HhccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhh-----ccCCCcEEEEecCChhHHHHHHHHHH
Confidence 345577888888642 4555566666543 223344566665544 234456666663322 347788
Q ss_pred hhhcCCCEEEEecCCCCCCcceEEe--cCCCC--CchhHHHHHHHHHHHHHHhhcCC
Q 021180 141 AALGNIPTIAFCDTDSPMRYVDIGI--PANNK--GKHSIGCLFWLLARMVLQMRGTI 193 (316)
Q Consensus 141 As~lnIPtIAL~DTds~~~~VD~pI--P~Nnd--S~~SI~Li~~lLaraVl~~rG~i 193 (316)
+++.+.++|+|.+.+.+....|+.| |.-.+ +.-..-+.+++|+..+-..||..
T Consensus 85 ~~~~~~~vi~it~~~~s~~~~d~~i~~~~~~~~~~~~~~~~~~q~la~~~a~~~g~~ 141 (153)
T cd05009 85 VKARGAKVIVITDDGDAKDLADVVIRVPATVEELSPLLYIVPLQLLAYHLAVARGID 141 (153)
T ss_pred HHHcCCEEEEEecCCcccccCCeEEECCCCchhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999987764333445544 43221 12233445678888888877765
No 38
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=88.99 E-value=3.8 Score=43.33 Aligned_cols=94 Identities=9% Similarity=0.052 Sum_probs=53.5
Q ss_pred hhCCCcEEEEccCchhHHHHHHHHHH---cCCceecCCccCCccCCcccccccCCceEEEeCCCCC----chhHHHhhhc
Q 021180 72 IENPGDIIVQSARPYGQRAVLKFAKY---THAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (316)
Q Consensus 72 I~n~~~ILfVstr~~~q~aV~kfA~~---tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EAs~l 144 (316)
|.+-++|.|++.+.... +...|..+ .|...+.. ....+.......+.+-|++|++.-.-. ..+++.|+..
T Consensus 465 L~~a~rI~i~G~G~S~~-~A~~~~~~l~~lg~~~~~~--~d~~~~~~~~~~l~~~DvvI~iS~sG~t~e~i~~~~~Ak~~ 541 (638)
T PRK14101 465 LNNARRIEFYGLGNSNI-VAQDAHYKFFRFGIPTIAY--GDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQA 541 (638)
T ss_pred HhcCCEEEEEEccHHHH-HHHHHHHHHhcCCceEEEc--CCHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHC
Confidence 45567788888875432 22223222 23322210 000000001123466688888764333 4577888999
Q ss_pred CCCEEEEecCCCCCC-cceEEecCC
Q 021180 145 NIPTIAFCDTDSPMR-YVDIGIPAN 168 (316)
Q Consensus 145 nIPtIAL~DTds~~~-~VD~pIP~N 168 (316)
|++||+|+|.+|++. +.|+.|+..
T Consensus 542 Ga~vIaIT~~~spLa~~aD~~L~~~ 566 (638)
T PRK14101 542 GAKVIAITSSNTPLAKRATVALETD 566 (638)
T ss_pred CCeEEEEcCCCChhHhhCCEEEEcC
Confidence 999999999877763 578877764
No 39
>PRK13937 phosphoheptose isomerase; Provisional
Probab=88.88 E-value=12 Score=33.27 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHH---HHHHHHcCCceecCCccCCccCCc-------------------
Q 021180 59 WEKLQMAARVIVA-IENPGDIIVQSARPYGQRAV---LKFAKYTHAHAIAGRHTPGTFTNQ------------------- 115 (316)
Q Consensus 59 ~ekL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV---~kfA~~tGa~~I~grw~pGtLTN~------------------- 115 (316)
...|..|+.-+.. +.+.++|.|+|....+.-+. ..|..+.+- ..+|.....
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~------~r~g~~~~~~~~d~~~~~~~~~d~~~~~ 94 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKK------ERPALPAIALTTDTSALTAIGNDYGFER 94 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccC------CCCCcceEeccCcHHHHHHHhccCCHHH
Confidence 3567777777766 58999999999976553222 222211110 111221111
Q ss_pred -----ccccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-cceEEecC
Q 021180 116 -----MQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPA 167 (316)
Q Consensus 116 -----~~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~ 167 (316)
.....++-|++|++.-.-+ ..+++.|+..|+|||+|++. ++++. +.|+.|..
T Consensus 95 ~~~~~~~~~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~ 157 (188)
T PRK13937 95 VFSRQVEALGRPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIV 157 (188)
T ss_pred HHHHHHHhhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEe
Confidence 1112367789888863332 45778999999999999985 55543 45555443
No 40
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=87.42 E-value=13 Score=36.18 Aligned_cols=127 Identities=16% Similarity=0.226 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHH------hhCCCcEEEEccCch--hHHHHHHH-HHHcCCceecCCccCCccCCcccccccCCceEEEeC
Q 021180 60 EKLQMAARVIVA------IENPGDIIVQSARPY--GQRAVLKF-AKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD 130 (316)
Q Consensus 60 ekL~~Aa~~I~~------I~n~~~ILfVstr~~--~q~aV~kf-A~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D 130 (316)
++++.|.+.-.. +.+..+|+|+|.... .-+.+..+ -..++...+.. .+.. ......+-+++|++.
T Consensus 13 ~q~~~a~~~~~~~~~~~~~~~~~~I~i~G~GgS~~~a~~~~~~l~~~~~~~~~~~---~~~~---~~~~~~~~dlvI~iS 86 (337)
T PRK08674 13 EQFEEALEIAISLDLEEDLEKIDNIVISGMGGSGIGGDLLRILLFDELKVPVFVN---RDYT---LPAFVDEKTLVIAVS 86 (337)
T ss_pred HHHHHHHHhhhccchhhhhcCCCEEEEEECcHHHHHHHHHHHHHHhcCCCcEEEe---Cccc---hhhcCCCCcEEEEEc
Confidence 344555544433 245677888888632 22222222 23344332221 1110 112235667888887
Q ss_pred CCCC----chhHHHhhhcCCCEEEEecCCCCCCcc-------eEEecCCCCCchhHHHHHHHHHHHHHHhhcCCC
Q 021180 131 PRTD----HQPIKEAALGNIPTIAFCDTDSPMRYV-------DIGIPANNKGKHSIGCLFWLLARMVLQMRGTIR 194 (316)
Q Consensus 131 P~~d----~qaI~EAs~lnIPtIAL~DTds~~~~V-------D~pIP~NndS~~SI~Li~~lLaraVl~~rG~i~ 194 (316)
-.-+ ..+++.|...|+++|+|++ ++++.-. -+.||++.-+..|..+++..|. .++...|.+.
T Consensus 87 ~SG~T~e~~~a~~~a~~~ga~vIaIT~-~~~L~~~a~~~~~~~i~ip~~~~~r~s~~~ll~~l~-~~l~~~Gl~~ 159 (337)
T PRK08674 87 YSGNTEETLSAVEQALKRGAKIIAITS-GGKLKEMAKEHGLPVIIVPGGYQPRAALGYLFTPLL-KILEKLGLIP 159 (337)
T ss_pred CCCCCHHHHHHHHHHHHCCCeEEEECC-CchHHHHHHhcCCeEEEeCCCCcchhhHHHHHHHHH-HHHHHcCCCc
Confidence 4443 4578899999999999996 4555433 6888988877778777776655 5666667654
No 41
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=87.00 E-value=6.2 Score=37.10 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=33.8
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCCCCC--CcceEEecC
Q 021180 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSPM--RYVDIGIPA 167 (316)
Q Consensus 120 f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DTds~~--~~VD~pIP~ 167 (316)
..+-|++|++.-... ..+++.|+..|+++|+|+|...++ .+.|+.|.+
T Consensus 185 ~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~ 238 (292)
T PRK11337 185 LQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICS 238 (292)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEc
Confidence 467788888764333 346678889999999999986655 245665543
No 42
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=86.90 E-value=9.1 Score=37.32 Aligned_cols=108 Identities=11% Similarity=0.079 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchh--HHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC---
Q 021180 60 EKLQMAARVIVAIENPGDIIVQSARPYG--QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD--- 134 (316)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~ILfVstr~~~--q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d--- 134 (316)
+.|..++..+.+ ++-++|.|+++..-. -...+.+..+.+...+. -..+.-|.+.....+.+-+++|++...-+
T Consensus 30 ~~l~~~~~~l~~-~~~~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v~-~~~~~~~~~~~~~~~~~~~lvI~iS~SGeT~e 107 (340)
T PRK11382 30 PLVHAIVEEMVK-RDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVY-AISGWEFCDNTPYRLDDRCAVIGVSDYGKTEE 107 (340)
T ss_pred HHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHHHHcCCCeE-EeccHHHHhcCCcCCCCCCEEEEEcCCCCCHH
Confidence 334444433332 234678887775432 22222222332221111 13444444333333445577777764333
Q ss_pred -chhHHHhhhcCCCEEEEecC-CCCC-CcceEEecCCC
Q 021180 135 -HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPANN 169 (316)
Q Consensus 135 -~qaI~EAs~lnIPtIAL~DT-ds~~-~~VD~pIP~Nn 169 (316)
..+++.|+..|.+||+|++. +|++ +..|+.|+.+-
T Consensus 108 ~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~a 145 (340)
T PRK11382 108 VIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQA 145 (340)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeCC
Confidence 45788899999999999976 5665 47899998884
No 43
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=85.53 E-value=5.8 Score=32.18 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=35.1
Q ss_pred cccCCceEEEeCCC-CC---chhHHHhhhcCCCEEEEecC-CCCCC-cceEEecC
Q 021180 119 SFNEPRLLILTDPR-TD---HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPA 167 (316)
Q Consensus 119 ~f~eP~llVV~DP~-~d---~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~ 167 (316)
...+-|++|++.-. .. ..+++.|+..|+|+|+|++. ++++. +.|+.|.+
T Consensus 44 ~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~ 98 (128)
T cd05014 44 MVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDL 98 (128)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEEC
Confidence 34667888888633 32 46788999999999999996 45543 46666644
No 44
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=81.09 E-value=9.7 Score=30.57 Aligned_cols=95 Identities=19% Similarity=0.256 Sum_probs=52.9
Q ss_pred hhCCCcEEEEccCch---hHHHHHHHHHHcCCce---ecCCccCCccCCcccccccCCceEEEeCCCCC----chhHHHh
Q 021180 72 IENPGDIIVQSARPY---GQRAVLKFAKYTHAHA---IAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEA 141 (316)
Q Consensus 72 I~n~~~ILfVstr~~---~q~aV~kfA~~tGa~~---I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EA 141 (316)
|.+.++|.|+|+... ++.+..++.+..+... -.+-+..+.+.+ ...=|++|++....+ .+.++++
T Consensus 2 i~~~~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~d~vi~is~sg~~~~~~~~~~~a 76 (131)
T PF01380_consen 2 IAKAKRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLEN-----LDPDDLVIIISYSGETRELIELLRFA 76 (131)
T ss_dssp HTTSSEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGG-----CSTTEEEEEEESSSTTHHHHHHHHHH
T ss_pred CCCCCEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhccc-----ccccceeEeeeccccchhhhhhhHHH
Confidence 456678999998643 4455555533332221 112222332222 233367777763333 4577899
Q ss_pred hhcCCCEEEEecCCCC-CC-cc--eEEecCCCCC
Q 021180 142 ALGNIPTIAFCDTDSP-MR-YV--DIGIPANNKG 171 (316)
Q Consensus 142 s~lnIPtIAL~DTds~-~~-~V--D~pIP~NndS 171 (316)
+..|+|+|+|++...+ +. +. .+.+|.++..
T Consensus 77 k~~g~~vi~iT~~~~~~l~~~ad~~l~~~~~~~~ 110 (131)
T PF01380_consen 77 KERGAPVILITSNSESPLARLADIVLYIPTGEES 110 (131)
T ss_dssp HHTTSEEEEEESSTTSHHHHHSSEEEEEESSCGS
T ss_pred HhcCCeEEEEeCCCCCchhhhCCEEEEecCCCcc
Confidence 9999999999976443 32 24 4455555544
No 45
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=80.83 E-value=20 Score=35.02 Aligned_cols=148 Identities=17% Similarity=0.223 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcc-----------------
Q 021180 55 LGKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM----------------- 116 (316)
Q Consensus 55 L~kT~ekL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~----------------- 116 (316)
+.+.+..+..|...+.. ++++|+.++++....++-.|+..++-..-|-+...-+=|..--=.
T Consensus 39 V~~alp~Ia~Av~~~~~~l~~GGRLiY~GAGTSGRLGvlDAsEcPPTfgv~~e~ViglIAGG~~A~~~avEGaED~~~~g 118 (298)
T COG2103 39 VEAALPQIAAAVDIIAAALKQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVIGLIAGGEEAILKAVEGAEDDEELG 118 (298)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCeEEEEcCCcccchhccchhhCCCCcCCChhHeeeeecCCHHHHHHhhcCccccHHHH
Confidence 55677778888888875 699999999999988888888777754443222111111111000
Q ss_pred -----cccccCCceEEEeCC----CCCchhHHHhhhcCCCEEEE-ecCCCCCCc-ceEEecC-----------CCCCchh
Q 021180 117 -----QTSFNEPRLLILTDP----RTDHQPIKEAALGNIPTIAF-CDTDSPMRY-VDIGIPA-----------NNKGKHS 174 (316)
Q Consensus 117 -----~~~f~eP~llVV~DP----~~d~qaI~EAs~lnIPtIAL-~DTds~~~~-VD~pIP~-----------NndS~~S 174 (316)
...+..=|+||=+-- -.=.-++++|+++|..||+| ||-+|++.. .||+|-- -=|+-..
T Consensus 119 ~~dl~~~~lt~~DvvvgIaASGrTPYvigal~yAr~~Ga~Ti~iacNp~s~i~~~Ad~~I~~~vGPEvltGSTRlKaGTA 198 (298)
T COG2103 119 EADLKNIGLTAKDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRIADIAIEPVVGPEVLTGSTRLKAGTA 198 (298)
T ss_pred HHHHHHcCCCcCCEEEEEecCCCCchhhHHHHHHHhcCCeEEEeecCCCchhhhhcCcceeeccCccccccccccccchH
Confidence 012466777776641 12256899999999999999 677777654 7887732 2245567
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCccceeecc
Q 021180 175 IGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 206 (316)
Q Consensus 175 I~Li~~lLaraVl~~rG~i~~~~~w~v~~dl~ 206 (316)
-.|++++|+..+.-.-|+.-.. .|+|+-
T Consensus 199 QKlvLNMlST~~Mi~lGKvy~N----lMVDv~ 226 (298)
T COG2103 199 QKLVLNMLSTGVMIKLGKVYGN----LMVDVK 226 (298)
T ss_pred HHHHHHHHHHHHHHHhcccccc----eEEEee
Confidence 7899999999998888887654 488873
No 46
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=79.96 E-value=29 Score=31.66 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCc-cC-Cccccc-----------c-
Q 021180 56 GKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGT-FT-NQMQTS-----------F- 120 (316)
Q Consensus 56 ~kT~ekL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGt-LT-N~~~~~-----------f- 120 (316)
+.-.+.+.+|+..|.. +.++++||.+|+.--...+..-.++.+|-+.-..+=+|+. || |..... |
T Consensus 21 ~~l~~~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFs 100 (176)
T COG0279 21 EALIEAIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFS 100 (176)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHH
Confidence 4556778888888876 5999999999997766667665666677666665556654 33 443321 1
Q ss_pred -------cCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCCC----CCCcceEEecCCC
Q 021180 121 -------NEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDS----PMRYVDIGIPANN 169 (316)
Q Consensus 121 -------~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DTds----~~~~VD~pIP~Nn 169 (316)
++=|+||-+.+.-+ -.|++.|...++-||+|.-.|. .+.-+.+-||..+
T Consensus 101 RqveA~g~~GDvLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~D~~i~VPs~~ 164 (176)
T COG0279 101 RQVEALGQPGDVLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGLLDVEIRVPSTD 164 (176)
T ss_pred HHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccccccceEEecCCCc
Confidence 67799998887766 4588899999999999986554 3444666677763
No 47
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=79.74 E-value=17 Score=35.31 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=57.0
Q ss_pred HHHHHHH-hhCCCcEEEEcc---CchhH---HHHHHHHHHcCCceecCCccCCccCCccccc------ccCCceEEEeCC
Q 021180 65 AARVIVA-IENPGDIIVQSA---RPYGQ---RAVLKFAKYTHAHAIAGRHTPGTFTNQMQTS------FNEPRLLILTDP 131 (316)
Q Consensus 65 Aa~~I~~-I~n~~~ILfVst---r~~~q---~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~------f~eP~llVV~DP 131 (316)
++..+.. .....+|.||.. .++.. +.+++.++..|...+.. .+.......|.. -+.+|.|||.-.
T Consensus 12 ~~~~~~~~~~~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~~~--~~~~~d~~~q~~~i~~li~~~vdgIiv~~~ 89 (336)
T PRK15408 12 GIALISMTVQAAERIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYD--GPTEPSVSGQVQLINNFVNQGYNAIIVSAV 89 (336)
T ss_pred HHHHhcccccCCcEEEEEECCCCCHHHHHHHHHHHHHHHHhCCEEEEE--CCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3334433 256667766543 34443 44678888888665421 222222222221 267999999744
Q ss_pred CCC--chhHHHhhhcCCCEEEEecCCCCCCcceEEe
Q 021180 132 RTD--HQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (316)
Q Consensus 132 ~~d--~qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (316)
..+ ...|++|...|||+|.+ |++.+....++-|
T Consensus 90 d~~al~~~l~~a~~~gIpVV~~-d~~~~~~~~~~~V 124 (336)
T PRK15408 90 SPDGLCPALKRAMQRGVKVLTW-DSDTKPECRSYYI 124 (336)
T ss_pred CHHHHHHHHHHHHHCCCeEEEe-CCCCCCccceEEE
Confidence 434 57899999999999985 6665444444444
No 48
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=78.96 E-value=14 Score=38.83 Aligned_cols=119 Identities=13% Similarity=0.138 Sum_probs=64.7
Q ss_pred hCCCcEEEEccCch--hHHHHHHHHHHc-CCceecCCccCCccCCcccccccCCceEEEeCCCCC----chhHHHhhhcC
Q 021180 73 ENPGDIIVQSARPY--GQRAVLKFAKYT-HAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGN 145 (316)
Q Consensus 73 ~n~~~ILfVstr~~--~q~aV~kfA~~t-Ga~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EAs~ln 145 (316)
.+-.+|.|+++..- .......+..+. +..... -.+..|.. ......+.+++|++...-+ ..+++.|+..|
T Consensus 289 ~~~~~I~~~G~GsS~~aa~~a~~~~~~~~~i~~~~--~~~~~~~~-~~~~~~~~dlvI~iS~SG~T~e~v~a~~~ak~~g 365 (607)
T TIGR01135 289 KNVDRIQIVACGTSYHAGLVAKYLIERLAGIPVEV--EIASEFRY-RKPVVDKDTLVIAISQSGETADTLAALRLAKELG 365 (607)
T ss_pred ccCCEEEEEEeechHHHHHHHHHHHHHhcCCCEEE--ecHHHHhh-cCCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcC
Confidence 45567888888643 222333333332 221111 11122221 2223456788888864433 45788888899
Q ss_pred CCEEEEecC-CCCCC-cceEEecCCCC---------CchhHHHHHHHHHHHHHHhhcCCC
Q 021180 146 IPTIAFCDT-DSPMR-YVDIGIPANNK---------GKHSIGCLFWLLARMVLQMRGTIR 194 (316)
Q Consensus 146 IPtIAL~DT-ds~~~-~VD~pIP~Nnd---------S~~SI~Li~~lLaraVl~~rG~i~ 194 (316)
++||+|.+. +|++. ..|+.|+.+.. |..|.-+++.+|+-.+...+|.++
T Consensus 366 a~~IaIT~~~~S~La~~ad~~l~~~~~~e~~~~~tks~~s~l~~l~lL~~~l~~~~g~~~ 425 (607)
T TIGR01135 366 AKTLGICNVPGSTLVRESDHTLYTRAGPEIGVASTKAFTTQLTVLYLLALKLAKARGTLS 425 (607)
T ss_pred CcEEEEECCCCChHHhhcCceEEecCCCccchhhhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999985 56653 56676665431 222333455566666665566543
No 49
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=77.36 E-value=4.6 Score=36.25 Aligned_cols=93 Identities=11% Similarity=0.077 Sum_probs=46.8
Q ss_pred HHHHHHHHHh-hCCCcEEEEccC-c-h---hHHHHHHHHHHcCCceecC-CccCCccCCcccccccCCceEEEeCCCCCc
Q 021180 63 QMAARVIVAI-ENPGDIIVQSAR-P-Y---GQRAVLKFAKYTHAHAIAG-RHTPGTFTNQMQTSFNEPRLLILTDPRTDH 135 (316)
Q Consensus 63 ~~Aa~~I~~I-~n~~~ILfVstr-~-~---~q~aV~kfA~~tGa~~I~g-rw~pGtLTN~~~~~f~eP~llVV~DP~~d~ 135 (316)
..+++.+... ...++|.|++.. . . ..+.+++.++..|...+.. .+....+.+..+.-...|+.|++.+-..-.
T Consensus 118 ~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~r~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~dai~~~~d~~a~ 197 (281)
T cd06325 118 ETQLELLKKLLPDAKTVGVLYNPSEANSVVQVKELKKAAAKLGIEVVEATVSSSNDVQQAAQSLAGKVDAIYVPTDNTVA 197 (281)
T ss_pred HHHHHHHHHHCCCCcEEEEEeCCCCccHHHHHHHHHHHHHhCCCEEEEEecCCHHHHHHHHHHhcccCCEEEEcCchhHH
Confidence 3444555443 356778887542 2 2 2244556666667654331 111111222222222357888887533322
Q ss_pred hhHHHhhh----cCCCEEEEecCC
Q 021180 136 QPIKEAAL----GNIPTIAFCDTD 155 (316)
Q Consensus 136 qaI~EAs~----lnIPtIAL~DTd 155 (316)
.+++.+.. .+||+|++-|+.
T Consensus 198 ~~~~~~~~~~~~~~ipvig~d~~~ 221 (281)
T cd06325 198 SAMEAVVKVANEAKIPVIASDDDM 221 (281)
T ss_pred hHHHHHHHHHHHcCCCEEEcCHHH
Confidence 33333333 479999998874
No 50
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=76.59 E-value=6.5 Score=35.89 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=37.2
Q ss_pred hCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEe--CCCCCchhHHHhhhcCCCEE
Q 021180 73 ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT--DPRTDHQPIKEAALGNIPTI 149 (316)
Q Consensus 73 ~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~--DP~~d~qaI~EAs~lnIPtI 149 (316)
+.+.+|.+|+.+.. ..+.++++.-+...+.+.+.++.| ...++||+. |+..+.+...+|...|||+-
T Consensus 30 ~~ga~VtVvsp~~~--~~l~~l~~~~~i~~~~~~~~~~dl--------~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn 98 (205)
T TIGR01470 30 KAGAQLRVIAEELE--SELTLLAEQGGITWLARCFDADIL--------EGAFLVIAATDDEELNRRVAHAARARGVPVN 98 (205)
T ss_pred HCCCEEEEEcCCCC--HHHHHHHHcCCEEEEeCCCCHHHh--------CCcEEEEECCCCHHHHHHHHHHHHHcCCEEE
Confidence 55667777765432 233344443333333333333322 334565554 33466889999999999884
No 51
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=76.34 E-value=7.2 Score=35.72 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=43.1
Q ss_pred cEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEe----CCCC---CchhHHHhhhcCCCEE
Q 021180 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT----DPRT---DHQPIKEAALGNIPTI 149 (316)
Q Consensus 77 ~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~----DP~~---d~qaI~EAs~lnIPtI 149 (316)
+|+++........-+..+....|.....-++.-+.+.. .......+|.||++ +|.. ..+.++++...++|++
T Consensus 2 ~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiL 80 (214)
T PRK07765 2 RILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLAD-EAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLL 80 (214)
T ss_pred eEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHH-HHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEE
Confidence 36677666554444556666667665432221111110 00113457888887 4432 2467889888899999
Q ss_pred EEe
Q 021180 150 AFC 152 (316)
Q Consensus 150 AL~ 152 (316)
|||
T Consensus 81 GIC 83 (214)
T PRK07765 81 GVC 83 (214)
T ss_pred EEc
Confidence 998
No 52
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=76.34 E-value=17 Score=34.54 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=34.0
Q ss_pred cccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-cceEEe
Q 021180 119 SFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGI 165 (316)
Q Consensus 119 ~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pI 165 (316)
...+-|++|++.-.-+ .++++.|+..|+|||+|++. +|++. +-|+.+
T Consensus 86 ~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l 138 (321)
T PRK11543 86 MIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVL 138 (321)
T ss_pred ccCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEE
Confidence 3467789888875433 45778999999999999985 45553 355555
No 53
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=76.30 E-value=20 Score=34.04 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=34.2
Q ss_pred cccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-cceEEecC
Q 021180 119 SFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPA 167 (316)
Q Consensus 119 ~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~ 167 (316)
....=|++|++.-.-. ..+++.|+..|+|||+|.|+ +|++. ..|+.+..
T Consensus 174 ~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~ 228 (281)
T COG1737 174 LLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLV 228 (281)
T ss_pred hCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEec
Confidence 3455678888874443 34667889999999999999 77765 34544443
No 54
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=72.96 E-value=30 Score=36.77 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=34.0
Q ss_pred CCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCC-CCC-CcceEEecCC
Q 021180 122 EPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPM-RYVDIGIPAN 168 (316)
Q Consensus 122 eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~-~~VD~pIP~N 168 (316)
.-+++|++...-+ ..+++.|+..|++||+|++.. |++ +..|+.|+.+
T Consensus 369 ~~~lvI~ISqSGeT~d~i~al~~ak~~Ga~~IaITn~~~S~La~~ad~~l~~~ 421 (640)
T PTZ00295 369 EDAGVIFISQSGETLDVVRALNLADELNLPKISVVNTVGSLIARSTDCGVYLN 421 (640)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCEEEEeC
Confidence 4577777764433 568889999999999999864 444 4677877754
No 55
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=72.56 E-value=35 Score=36.80 Aligned_cols=93 Identities=8% Similarity=0.084 Sum_probs=52.8
Q ss_pred HhhCCCcEEEEccCch--hHHHHHHHHHH-cCCceecCCccCCccCCcccccccCCceEEEeCCCCC----chhHHHhhh
Q 021180 71 AIENPGDIIVQSARPY--GQRAVLKFAKY-THAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAAL 143 (316)
Q Consensus 71 ~I~n~~~ILfVstr~~--~q~aV~kfA~~-tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EAs~ 143 (316)
.+.+-.+|.|+++..- .-.....+..+ .+..... ..+..|.++... +..-+++|++...-+ ..+++.|+.
T Consensus 359 ~l~~~~~I~~~G~GsS~~aa~~a~~~l~kl~~i~v~~--~~~sef~~~~~~-~~~~~lvI~ISqSGeT~eti~Al~~Ak~ 435 (680)
T PLN02981 359 TIRRSRRIVFIGCGTSYNAALAARPILEELSGVPVTM--ELASDLLDRQGP-IYREDTAVFVSQSGETADTLRALEYAKE 435 (680)
T ss_pred HHhcCCEEEEEEecHHHHHHHHHHHHHHHHhCCCEEE--ecchHHHhcccc-CCCCCeEEEEeCCcCCHHHHHHHHHHHH
Confidence 3455677888877543 22333334444 2332211 234444443222 334567777764333 568889999
Q ss_pred cCCCEEEEecC-CCCCC-cceEEec
Q 021180 144 GNIPTIAFCDT-DSPMR-YVDIGIP 166 (316)
Q Consensus 144 lnIPtIAL~DT-ds~~~-~VD~pIP 166 (316)
.|.+||+|++. +|++. ..|+.|.
T Consensus 436 ~Ga~~IaITn~~~S~La~~ad~~i~ 460 (680)
T PLN02981 436 NGALCVGITNTVGSAISRGTHCGVH 460 (680)
T ss_pred CCCcEEEEECCCCChhHhccCeeEE
Confidence 99999999866 66663 4566555
No 56
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=71.95 E-value=8.2 Score=34.65 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=32.1
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEec
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP 166 (316)
+.+|.||+.....+...++++...|||+|.+ |++.+-....+..+
T Consensus 63 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~V~~ 107 (275)
T cd06295 63 GRADGVILIGQHDQDPLPERLAETGLPFVVW-GRPLPGQPYCYVGS 107 (275)
T ss_pred CCCCEEEEeCCCCChHHHHHHHhCCCCEEEE-CCccCCCCCCEEEE
Confidence 4679888887666667789999999999966 77654333444433
No 57
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=69.84 E-value=17 Score=32.29 Aligned_cols=59 Identities=12% Similarity=-0.053 Sum_probs=36.9
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCC-CcceEEecCCCCCchhHHHHHHHHH
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPM-RYVDIGIPANNKGKHSIGCLFWLLA 183 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~-~~VD~pIP~NndS~~SI~Li~~lLa 183 (316)
+.+|.||+..+..+...++++...+||+|.+ |++.+. ..+.+.-. |...+..++...|.
T Consensus 59 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~~v~~---d~~~~g~~~~~~l~ 118 (270)
T cd06294 59 KRVDGFILLYSREDDPIIDYLKEEKFPFVVI-GKPEDDKENITYVDN---DNIQAGYDATEYLI 118 (270)
T ss_pred cCcCEEEEecCcCCcHHHHHHHhcCCCEEEE-CCCCCCCCCCCeEEE---CcHHHHHHHHHHHH
Confidence 3478899887666667789999999999987 555432 23344322 33444444444443
No 58
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=69.30 E-value=19 Score=31.76 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=31.6
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEec
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP 166 (316)
+.+|.||+.....+...++++...|||+|.+ |++.+...+++...
T Consensus 53 ~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~v~~ 97 (266)
T cd06278 53 YRVDGVIVTSGTLSSELAEECRRNGIPVVLI-NRYVDGPGVDAVCS 97 (266)
T ss_pred cCCCEEEEecCCCCHHHHHHHhhcCCCEEEE-CCccCCCCCCEEEE
Confidence 4578888876555666788999999999987 66554445565433
No 59
>PRK13566 anthranilate synthase; Provisional
Probab=68.89 E-value=38 Score=37.02 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=51.2
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeC-CC-----CCchhHHHhhhcCCC
Q 021180 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PR-----TDHQPIKEAALGNIP 147 (316)
Q Consensus 74 n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D-P~-----~d~qaI~EAs~lnIP 147 (316)
++.+|++|.........+.++.+..|+....-++--. ........||.||++. |. .-...|+++...++|
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~----~~~~~~~~~DgVVLsgGpgsp~d~~~~~lI~~a~~~~iP 600 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA----EEMLDRVNPDLVVLSPGPGRPSDFDCKATIDAALARNLP 600 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC----hhHhhhcCCCEEEECCCCCChhhCCcHHHHHHHHHCCCc
Confidence 3468999998876677778888888987654343210 0111124689988862 21 236788899889999
Q ss_pred EEEEe
Q 021180 148 TIAFC 152 (316)
Q Consensus 148 tIAL~ 152 (316)
++|+|
T Consensus 601 ILGIC 605 (720)
T PRK13566 601 IFGVC 605 (720)
T ss_pred EEEEe
Confidence 99998
No 60
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=68.56 E-value=1.6 Score=35.28 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=24.5
Q ss_pred CCceEEEe--CCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecC
Q 021180 122 EPRLLILT--DPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPA 167 (316)
Q Consensus 122 eP~llVV~--DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~ 167 (316)
.-++||+. |+..+.+..++|...+||+- .-.+|.+-||-+|+
T Consensus 60 ~~~lV~~at~d~~~n~~i~~~a~~~~i~vn----~~D~p~~~dF~~Pa 103 (103)
T PF13241_consen 60 GADLVFAATDDPELNEAIYADARARGILVN----VVDDPELCDFIFPA 103 (103)
T ss_dssp TESEEEE-SS-HHHHHHHHHHHHHTTSEEE----ETT-CCCCSEE--E
T ss_pred hheEEEecCCCHHHHHHHHHHHhhCCEEEE----ECCCcCCCeEEcCC
Confidence 34555554 35556777888988999873 33346677777763
No 61
>PRK05670 anthranilate synthase component II; Provisional
Probab=66.55 E-value=12 Score=33.09 Aligned_cols=71 Identities=17% Similarity=0.291 Sum_probs=43.1
Q ss_pred EEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEe----CCCC---CchhHHHhhhcCCCEEE
Q 021180 78 IIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT----DPRT---DHQPIKEAALGNIPTIA 150 (316)
Q Consensus 78 ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~----DP~~---d~qaI~EAs~lnIPtIA 150 (316)
||+|.........+.++....|..+..-++..... ....-..||.||++ ++.. ....|++ ...++|++|
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~---~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~-~~~~~PvLG 77 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITL---EEIEALNPDAIVLSPGPGTPAEAGISLELIRE-FAGKVPILG 77 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCH---HHHHhCCCCEEEEcCCCCChHHcchHHHHHHH-hcCCCCEEE
Confidence 78888877776677777777787765544432111 11111248999997 3321 1234444 456799999
Q ss_pred Ee
Q 021180 151 FC 152 (316)
Q Consensus 151 L~ 152 (316)
||
T Consensus 78 IC 79 (189)
T PRK05670 78 VC 79 (189)
T ss_pred EC
Confidence 97
No 62
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=66.43 E-value=28 Score=37.01 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHH-HhhCCCcEEEEccCc----hhHHHHHHHHHHcCC----ceecCCccCCccCCcccc---cccCCceE
Q 021180 59 WEKLQMAARVIV-AIENPGDIIVQSARP----YGQRAVLKFAKYTHA----HAIAGRHTPGTFTNQMQT---SFNEPRLL 126 (316)
Q Consensus 59 ~ekL~~Aa~~I~-~I~n~~~ILfVstr~----~~q~aV~kfA~~tGa----~~I~grw~pGtLTN~~~~---~f~eP~ll 126 (316)
+..+.+|+..|. +|+++.+|++++--- .+.-++.++-++.|. +||-.|+..|-=-|.... .-...+||
T Consensus 52 l~~m~~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~~~~~~~~~Li 131 (575)
T PRK11070 52 LSGIEKAVELLYNALREGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAHARGAQLI 131 (575)
T ss_pred hhCHHHHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHHHHHhcCCCEE
Confidence 455667777665 478889999988742 234455677777876 567777766532222211 12467899
Q ss_pred EEeCCC-CCchhHHHhhhcCCCEEEEecCC
Q 021180 127 ILTDPR-TDHQPIKEAALGNIPTIAFCDTD 155 (316)
Q Consensus 127 VV~DP~-~d~qaI~EAs~lnIPtIAL~DTd 155 (316)
|.+|.. .++.+|..|..+||.+|- .|-.
T Consensus 132 ItvD~Gi~~~e~i~~a~~~gidvIV-tDHH 160 (575)
T PRK11070 132 VTVDNGISSHAGVAHAHALGIPVLV-TDHH 160 (575)
T ss_pred EEEcCCcCCHHHHHHHHHCCCCEEE-ECCC
Confidence 999955 457799999999999875 3544
No 63
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=66.06 E-value=23 Score=30.75 Aligned_cols=59 Identities=20% Similarity=0.088 Sum_probs=36.8
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHHH
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 183 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lLa 183 (316)
+.+|.||+.....+...++++...|||+|.+ |++.+...+.+. +.+...+..++...|.
T Consensus 54 ~~~d~iii~~~~~~~~~~~~~~~~~ipvv~~-~~~~~~~~~~~v---~~d~~~~g~~~~~~l~ 112 (264)
T cd06267 54 RRVDGIILAPSRLDDELLEELAALGIPVVLV-DRPLDGLGVDSV---GIDNRAGAYLAVEHLI 112 (264)
T ss_pred cCcCEEEEecCCcchHHHHHHHHcCCCEEEe-cccccCCCCCEE---eeccHHHHHHHHHHHH
Confidence 5789888887665555589999999999987 454432334333 2233445555544443
No 64
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=66.02 E-value=23 Score=34.97 Aligned_cols=92 Identities=18% Similarity=0.285 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCcee-cCCccCCccCCcccc------c----c--cCCceEE
Q 021180 61 KLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAI-AGRHTPGTFTNQMQT------S----F--NEPRLLI 127 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I-~grw~pGtLTN~~~~------~----f--~eP~llV 127 (316)
+......+|..+++.|+=++|-+|.+. .+.++....|..|+ -|+.- +++...... + . ..||++|
T Consensus 12 hvhfFk~~I~eL~~~GheV~it~R~~~--~~~~LL~~yg~~y~~iG~~g-~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~i 88 (335)
T PF04007_consen 12 HVHFFKNIIRELEKRGHEVLITARDKD--ETEELLDLYGIDYIVIGKHG-DSLYGKLLESIERQYKLLKLIKKFKPDVAI 88 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEeccc--hHHHHHHHcCCCeEEEcCCC-CCHHHHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence 455566778888666665666666654 45567778887664 44433 333332210 0 1 3799988
Q ss_pred EeCCCCCchhHHHhhhcCCCEEEEecCCCCC
Q 021180 128 LTDPRTDHQPIKEAALGNIPTIAFCDTDSPM 158 (316)
Q Consensus 128 V~DP~~d~qaI~EAs~lnIPtIAL~DTds~~ 158 (316)
-.. ...+.+=|.-+|||+|.++||....
T Consensus 89 s~~---s~~a~~va~~lgiP~I~f~D~e~a~ 116 (335)
T PF04007_consen 89 SFG---SPEAARVAFGLGIPSIVFNDTEHAI 116 (335)
T ss_pred ecC---cHHHHHHHHHhCCCeEEEecCchhh
Confidence 543 2456778899999999999997543
No 65
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=63.90 E-value=28 Score=30.72 Aligned_cols=58 Identities=9% Similarity=-0.091 Sum_probs=34.8
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHH
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lL 182 (316)
+..|.||+.....+...+.++...+||+|.+ |++.+...+++... |...+..++...|
T Consensus 58 ~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~V~~---d~~~~~~~a~~~l 115 (268)
T cd06271 58 GLVDGVIISRTRPDDPRVALLLERGFPFVTH-GRTELGDPHPWVDF---DNEAAAYQAVRRL 115 (268)
T ss_pred CCCCEEEEecCCCCChHHHHHHhcCCCEEEE-CCcCCCCCCCeEee---CcHHHHHHHHHHH
Confidence 3468888776554555678888899999966 66544334444432 2334444444333
No 66
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=63.52 E-value=43 Score=31.50 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=24.8
Q ss_pred ccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCc
Q 021180 120 FNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRY 160 (316)
Q Consensus 120 f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~ 160 (316)
+..-|++ |+++. -.+.||..+|+|+|.+-+...-...
T Consensus 275 ~~~ad~~-v~~Sg---gi~~Ea~~~g~PvI~~~~~~~~~~~ 311 (363)
T cd03786 275 LKNADLV-LTDSG---GIQEEASFLGVPVLNLRDRTERPET 311 (363)
T ss_pred HHcCcEE-EEcCc---cHHhhhhhcCCCEEeeCCCCccchh
Confidence 3445655 46665 3678999999999998765433333
No 67
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=62.41 E-value=38 Score=30.71 Aligned_cols=94 Identities=19% Similarity=0.189 Sum_probs=61.2
Q ss_pred HHHHHHHHhhCCCcEEEEccCc---hhHHHHHHHHHHcCCceecCCccCCccCCccccc---------------------
Q 021180 64 MAARVIVAIENPGDIIVQSARP---YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTS--------------------- 119 (316)
Q Consensus 64 ~Aa~~I~~I~n~~~ILfVstr~---~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~--------------------- 119 (316)
.++.+|++- +.-+|+||.+- ...+.+.|+++.-+...++ ++++.+|.+...
T Consensus 27 v~ammIkkA--krPLlivGp~~~dee~~E~~vKi~ekfnipiva---Ta~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~ 101 (170)
T COG1880 27 VVAMMIKKA--KRPLLIVGPLALDEELLELAVKIIEKFNIPIVA---TASSMGNLIGRGIGSEYINLHAITQYLTDPNWP 101 (170)
T ss_pred HHHHHHHhc--CCceEEecccccCHHHHHHHHHHHHhcCCceEe---cchhhcchhhcccccchhHHHHHHHHhcCCCCC
Confidence 344555543 34488999864 4555666888887766655 455555443221
Q ss_pred -c---cCCceEEEeCCCCC-----chhHHHhhhcCCCEEEEecCCCCCCcceEEec
Q 021180 120 -F---NEPRLLILTDPRTD-----HQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (316)
Q Consensus 120 -f---~eP~llVV~DP~~d-----~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP 166 (316)
| --+|++|++..... .+.++-.+ +|-+|+||-.-++- -||-.|
T Consensus 102 G~dg~g~yDlviflG~~~yy~sq~Ls~lKhFs--~i~tiaId~~Y~pn--Ad~SFp 153 (170)
T COG1880 102 GFDGNGNYDLVIFLGSIYYYLSQVLSGLKHFS--NIKTIAIDRYYQPN--ADYSFP 153 (170)
T ss_pred CcCCCCCcceEEEEeccHHHHHHHHHHhhhhh--cceEEEeccccCcC--ccccCC
Confidence 1 47899999997776 34667766 99999999887763 444443
No 68
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=62.14 E-value=58 Score=35.62 Aligned_cols=75 Identities=17% Similarity=0.268 Sum_probs=48.3
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeC----CC--CCchhHHHhhhcCCC
Q 021180 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD----PR--TDHQPIKEAALGNIP 147 (316)
Q Consensus 74 n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D----P~--~d~qaI~EAs~lnIP 147 (316)
.+.+|++|.........+.++.+..|.....-++..+ . .......||.|||+. |. .....|+++...++|
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~---~-~~~~~~~~DgLILsgGPGsp~d~~~~~~I~~~~~~~iP 590 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHA---E-AAFDERRPDLVVLSPGPGRPADFDVAGTIDAALARGLP 590 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCC---h-hhhhhcCCCEEEEcCCCCCchhcccHHHHHHHHHCCCC
Confidence 3467999988765556677777888876543333211 0 011124589999862 22 235678888889999
Q ss_pred EEEEe
Q 021180 148 TIAFC 152 (316)
Q Consensus 148 tIAL~ 152 (316)
++|||
T Consensus 591 vLGIC 595 (717)
T TIGR01815 591 VFGVC 595 (717)
T ss_pred EEEEC
Confidence 99998
No 69
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=61.84 E-value=63 Score=34.84 Aligned_cols=96 Identities=11% Similarity=0.100 Sum_probs=52.2
Q ss_pred HhhCCCcEEEEccCchh--HHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC----chhHHHhhhc
Q 021180 71 AIENPGDIIVQSARPYG--QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (316)
Q Consensus 71 ~I~n~~~ILfVstr~~~--q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EAs~l 144 (316)
.+.+-.+|.|+++.... -...+.+..+.....+. ...+..|.. ....+.+-+++|++...-+ ..+++.|+..
T Consensus 350 ~l~~a~rI~ivG~GtS~~aa~~ak~~~~kl~~i~v~-v~~asef~~-~~~~~~~~dlvI~ISqSGeT~dtl~Al~~Ak~~ 427 (670)
T PTZ00394 350 AILTSRRILFIACGTSLNSCLAVRPLFEELVPLPIS-VENASDFLD-RRPRIQRDDVCFFVSQSGETADTLMALQLCKEA 427 (670)
T ss_pred HHhCCCEEEEEEechHHHHHHHHHHHHHHhcCCCEE-Eeccchhhh-hccCCCCCCEEEEEECCcCcHHHHHHHHHHHHC
Confidence 34566778888775332 12222233332111111 112222322 1222345578777764433 4578899999
Q ss_pred CCCEEEEecC-CCCC-CcceEEecCC
Q 021180 145 NIPTIAFCDT-DSPM-RYVDIGIPAN 168 (316)
Q Consensus 145 nIPtIAL~DT-ds~~-~~VD~pIP~N 168 (316)
|++||+|++. +|++ +..|+.|..+
T Consensus 428 Ga~tIaITn~~~S~La~~AD~~l~~~ 453 (670)
T PTZ00394 428 GAMCVGITNVVGSSISRLTHYAIHLN 453 (670)
T ss_pred CCcEEEEECCCCCHHHHhcCeEEEec
Confidence 9999999986 4554 4677777653
No 70
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=61.64 E-value=79 Score=29.01 Aligned_cols=89 Identities=10% Similarity=0.014 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCC-Cchh
Q 021180 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT-DHQP 137 (316)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~-d~qa 137 (316)
.+.|..|++.+..-...-.++++|..+... .+++.++..|..- .=+|+|. .+....-++.-|++|+..-.+ -...
T Consensus 207 ~~~li~a~~~l~~~~~~~~l~ivG~g~~~~-~~~~~~~~~~~~~-~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~ 282 (358)
T cd03812 207 HEFLIEIFAELLKKNPNAKLLLVGDGELEE-EIKKKVKELGLED-KVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLV 282 (358)
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEeCCchHH-HHHHHHHhcCCCC-cEEEecc--cCCHHHHHHhcCEEEecccccCCCHH
Confidence 344555555554322345778888776544 3445555544321 1134443 333444467778777665321 1457
Q ss_pred HHHhhhcCCCEEEE
Q 021180 138 IKEAALGNIPTIAF 151 (316)
Q Consensus 138 I~EAs~lnIPtIAL 151 (316)
+.||..+|.|+|+-
T Consensus 283 ~lEAma~G~PvI~s 296 (358)
T cd03812 283 LIEAQASGLPCILS 296 (358)
T ss_pred HHHHHHhCCCEEEE
Confidence 88999999999984
No 71
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=61.55 E-value=30 Score=33.66 Aligned_cols=98 Identities=15% Similarity=0.115 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCch--------hHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeC
Q 021180 59 WEKLQMAARVIVAIENPGDIIVQSARPY--------GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD 130 (316)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~ILfVstr~~--------~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D 130 (316)
...|.+|+..+..-...-+++++|.... .++.+++.++..+... +|+|..-.+.....++.-|++|+..
T Consensus 208 ~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v---~~~G~~~~~~l~~~~~~aDv~v~pS 284 (380)
T PRK15484 208 ILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRC---IMLGGQPPEKMHNYYPLADLVVVPS 284 (380)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcE---EEeCCCCHHHHHHHHHhCCEEEeCC
Confidence 3445555555433212235666775432 2234455555554321 3444321223333456778887765
Q ss_pred CCCC--chhHHHhhhcCCCEEEEecCCCCCCc
Q 021180 131 PRTD--HQPIKEAALGNIPTIAFCDTDSPMRY 160 (316)
Q Consensus 131 P~~d--~qaI~EAs~lnIPtIAL~DTds~~~~ 160 (316)
...+ ...+-||..+|+|+|+- |.....+.
T Consensus 285 ~~~E~f~~~~lEAma~G~PVI~s-~~gg~~Ei 315 (380)
T PRK15484 285 QVEEAFCMVAVEAMAAGKPVLAS-TKGGITEF 315 (380)
T ss_pred CCccccccHHHHHHHcCCCEEEe-CCCCcHhh
Confidence 3333 36788999999999994 44444443
No 72
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=61.36 E-value=71 Score=28.60 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=50.8
Q ss_pred CcEEEEccC---chhHHHHHHHHHHcCCceecCCcc------CCccCCc---------ccc----cc---cCCceEEEeC
Q 021180 76 GDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHT------PGTFTNQ---------MQT----SF---NEPRLLILTD 130 (316)
Q Consensus 76 ~~ILfVstr---~~~q~aV~kfA~~tGa~~I~grw~------pGtLTN~---------~~~----~f---~eP~llVV~D 130 (316)
.-++++|.. ....+.+.+|++++|...++.-.- .|.+.+. -+. .+ ..-|||+++.
T Consensus 29 RPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~~g~g~~DlvlfvG 108 (162)
T TIGR00315 29 RPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGFDGEGNYDLVLFLG 108 (162)
T ss_pred CcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhccCCCCcCEEEEeC
Confidence 346667763 467889999999999987664322 2444222 111 13 6889999998
Q ss_pred CCCCc--hhHHHhh-hcCCCEEEEecCCC
Q 021180 131 PRTDH--QPIKEAA-LGNIPTIAFCDTDS 156 (316)
Q Consensus 131 P~~d~--qaI~EAs-~lnIPtIAL~DTds 156 (316)
.+... |.|.--+ ..++-||+||.--.
T Consensus 109 ~~~y~~~~~ls~lk~f~~~~~i~l~~~y~ 137 (162)
T TIGR00315 109 IIYYYLSQMLSSLKHFSHIVTIAIDKYYQ 137 (162)
T ss_pred CcchHHHHHHHHHHhhcCcEEEEecCCCC
Confidence 76652 2222222 22799999996543
No 73
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=60.98 E-value=21 Score=33.47 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=22.7
Q ss_pred CceEEEe--CCCCCchhHHHhhhcCCCEEEEec
Q 021180 123 PRLLILT--DPRTDHQPIKEAALGNIPTIAFCD 153 (316)
Q Consensus 123 P~llVV~--DP~~d~qaI~EAs~lnIPtIAL~D 153 (316)
.++||.. |+..|++...+|...++++....|
T Consensus 86 ~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 86 KHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred CcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 4566655 566778888899999999876544
No 74
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=60.92 E-value=46 Score=31.42 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHh-h---CCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCC
Q 021180 57 KTWEKLQMAARVIVAI-E---NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPR 132 (316)
Q Consensus 57 kT~ekL~~Aa~~I~~I-~---n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~ 132 (316)
|-...|.+|++.+..- . .+-.++++|..+.. ..+++.++..|.... -+..|...+ ....+..-|++|+..-.
T Consensus 207 Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~-~~~~~~~~~~~~~~~--v~~~g~~~~-~~~~~~~adi~v~pS~~ 282 (374)
T TIGR03088 207 KDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPAR-GACEQMVRAAGLAHL--VWLPGERDD-VPALMQALDLFVLPSLA 282 (374)
T ss_pred cCHHHHHHHHHHHHHhCcccccceEEEEecCCchH-HHHHHHHHHcCCcce--EEEcCCcCC-HHHHHHhcCEEEecccc
Confidence 4445566666555432 1 13467778865543 345666666664322 244554322 22335666777665422
Q ss_pred CC-chhHHHhhhcCCCEEEEecCCCCCCcc
Q 021180 133 TD-HQPIKEAALGNIPTIAFCDTDSPMRYV 161 (316)
Q Consensus 133 ~d-~qaI~EAs~lnIPtIAL~DTds~~~~V 161 (316)
+. ...+-||..+|+|+|+ .|.....+.+
T Consensus 283 Eg~~~~~lEAma~G~Pvv~-s~~~g~~e~i 311 (374)
T TIGR03088 283 EGISNTILEAMASGLPVIA-TAVGGNPELV 311 (374)
T ss_pred ccCchHHHHHHHcCCCEEE-cCCCCcHHHh
Confidence 22 4588999999999998 4554444433
No 75
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=59.98 E-value=32 Score=30.32 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=30.0
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEE
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (316)
+..|.||+..+..+...++++...+||+|.+ |++.+...+.+.
T Consensus 54 ~~~dgiii~~~~~~~~~l~~~~~~~ipvV~~-~~~~~~~~~~~v 96 (267)
T cd06283 54 YQVDGLIVNPTGNNKELYQRLAKNGKPVVLV-DRKIPELGVDTV 96 (267)
T ss_pred cCcCEEEEeCCCCChHHHHHHhcCCCCEEEE-cCCCCCCCCCEE
Confidence 4578888877655556689998999999987 555443334443
No 76
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=59.84 E-value=13 Score=32.76 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=49.1
Q ss_pred cEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCccccc----------------------------------ccC
Q 021180 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTS----------------------------------FNE 122 (316)
Q Consensus 77 ~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~----------------------------------f~e 122 (316)
+|.++|..+-|+..+ |-+-+|.....+.| ||+-+....-. ...
T Consensus 2 ~ialvG~PNvGKStL--fN~Ltg~~~~v~n~-pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 2 RIALVGNPNVGKSTL--FNALTGAKQKVGNW-PGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp EEEEEESTTSSHHHH--HHHHHTTSEEEEES-TTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHH--HHHHHCCCceecCC-CCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 578999999888765 55667777666666 55544432210 158
Q ss_pred CceEEEe-CCC---CCchhHHHhhhcCCCEEEEec
Q 021180 123 PRLLILT-DPR---TDHQPIKEAALGNIPTIAFCD 153 (316)
Q Consensus 123 P~llVV~-DP~---~d~qaI~EAs~lnIPtIAL~D 153 (316)
||++|++ |.. .+...+.+...+|+|+|-+.+
T Consensus 79 ~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN 113 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLN 113 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 8887655 633 334566788889999998865
No 77
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=59.43 E-value=15 Score=30.05 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=38.6
Q ss_pred cccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCCCCCC-c------ceEEecCCCCCchhH
Q 021180 119 SFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSPMR-Y------VDIGIPANNKGKHSI 175 (316)
Q Consensus 119 ~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DTds~~~-~------VD~pIP~NndS~~SI 175 (316)
...+-|++|++...-+ ..+++.|+..|+++|+|++ ++++. . .-+++|.+.-++-|.
T Consensus 40 ~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~-~~~l~~~~~~~~~~~~~~p~~~~~r~s~ 106 (119)
T cd05017 40 FVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITS-GGKLLEMAREHGVPVIIIPKGLQPRAAF 106 (119)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeC-CchHHHHHHHcCCcEEECCCCCCCceeH
Confidence 3456788888874433 4577889999999999995 44433 2 337778877666654
No 78
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=59.19 E-value=20 Score=26.97 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCC
Q 021180 63 QMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTN 114 (316)
Q Consensus 63 ~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN 114 (316)
.++.+.+..++.+..+.++.+.+...+-|.++|+..|..++.-.=.+|.+.=
T Consensus 14 l~~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~~~~~~~~~~~~~~ 65 (69)
T cd03420 14 LKLKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNTLISLETEKGKVKA 65 (69)
T ss_pred HHHHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHcCCEEEEEEecCCEEEE
Confidence 3455556666566667788888899999999999999988753324555543
No 79
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=58.73 E-value=83 Score=29.60 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=59.1
Q ss_pred cCHHHHHHHHHH-----------HHHHHHHh-hCCCcEEEEccCch--hHHHHHHHHHHcCCceec--CCccCCccCCcc
Q 021180 53 INLGKTWEKLQM-----------AARVIVAI-ENPGDIIVQSARPY--GQRAVLKFAKYTHAHAIA--GRHTPGTFTNQM 116 (316)
Q Consensus 53 INL~kT~ekL~~-----------Aa~~I~~I-~n~~~ILfVstr~~--~q~aV~kfA~~tGa~~I~--grw~pGtLTN~~ 116 (316)
++=.+.|+.... |..+|..+ +++.+|.||++|.. ....++.+.+..|..+.. .-.+.|.-....
T Consensus 96 ~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~ 175 (237)
T PRK11009 96 LKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQY 175 (237)
T ss_pred cChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCC
Confidence 455566766655 67778777 66778888998863 234455555556662111 112333322111
Q ss_pred --cccccCCc-eEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCC
Q 021180 117 --QTSFNEPR-LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPAN 168 (316)
Q Consensus 117 --~~~f~eP~-llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~N 168 (316)
....++.+ .|+|=|...|.++ |...||.+|++.-.-.+ .+ -|+|-|
T Consensus 176 ~K~~~l~~~~i~I~IGDs~~Di~a---A~~AGi~~I~v~~G~~~-~~--~~~~~~ 224 (237)
T PRK11009 176 TKTQWLKKKNIRIFYGDSDNDITA---AREAGARGIRILRAANS-TY--KPLPQA 224 (237)
T ss_pred CHHHHHHhcCCeEEEcCCHHHHHH---HHHcCCcEEEEecCCCC-CC--Cccccc
Confidence 11123334 3445577777554 56668888887544222 22 266665
No 80
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=57.30 E-value=39 Score=29.95 Aligned_cols=57 Identities=14% Similarity=-0.108 Sum_probs=35.5
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHH
Q 021180 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182 (316)
Q Consensus 122 eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lL 182 (316)
..|.||++....+.+.++++...|||+|.+ |+..+...+++... |......++...|
T Consensus 55 ~vdgiii~~~~~~~~~~~~l~~~~iPvv~~-~~~~~~~~~~~v~~---d~~~~~~~~~~~l 111 (268)
T cd06273 55 GVDGLALIGLDHSPALLDLLARRGVPYVAT-WNYSPDSPYPCVGF---DNREAGRLAARHL 111 (268)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEE-cCCCCCCCCCEEEe---ChHHHHHHHHHHH
Confidence 468888887666667788888899999987 44333223444432 3344444444444
No 81
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=56.34 E-value=33 Score=30.47 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=23.4
Q ss_pred cCCceEEEeCCCC------------CchhHHHhhhcCCCEEEEecC
Q 021180 121 NEPRLLILTDPRT------------DHQPIKEAALGNIPTIAFCDT 154 (316)
Q Consensus 121 ~eP~llVV~DP~~------------d~qaI~EAs~lnIPtIAL~DT 154 (316)
...|.||+..+.. -...|+++...++|++|+|--
T Consensus 35 ~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G 80 (198)
T cd01748 35 LSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLG 80 (198)
T ss_pred ccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHH
Confidence 4566677655421 246788888889999999843
No 82
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=56.21 E-value=35 Score=29.88 Aligned_cols=72 Identities=14% Similarity=0.277 Sum_probs=42.1
Q ss_pred EEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEe----CCCCC--chhHHHhhhcCCCEEEE
Q 021180 78 IIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT----DPRTD--HQPIKEAALGNIPTIAF 151 (316)
Q Consensus 78 ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~----DP~~d--~qaI~EAs~lnIPtIAL 151 (316)
|||+....+....+.++.++.|.....-++--+ .........+|.||++ ++..+ ...+.++...++|++|+
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~---~~~~~~~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGI 77 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEI---TLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGV 77 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCC---CHHHHhhcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEE
Confidence 566766555555556666677876554444211 1111123568888886 33322 34566666678999999
Q ss_pred e
Q 021180 152 C 152 (316)
Q Consensus 152 ~ 152 (316)
|
T Consensus 78 C 78 (184)
T cd01743 78 C 78 (184)
T ss_pred C
Confidence 8
No 83
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=55.25 E-value=25 Score=25.99 Aligned_cols=43 Identities=9% Similarity=0.114 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceec
Q 021180 62 LQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA 104 (316)
Q Consensus 62 L~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~ 104 (316)
|.++.+.+..+..+..+.++.+.+...+-|.++++..|..++.
T Consensus 14 ll~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~ 56 (70)
T PF01206_consen 14 LLKAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYEVVE 56 (70)
T ss_dssp HHHHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCEEEE
Confidence 4456666667766667778999999999999999999987554
No 84
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=55.02 E-value=58 Score=31.89 Aligned_cols=91 Identities=14% Similarity=0.053 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCc------------ccccccCCceE
Q 021180 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ------------MQTSFNEPRLL 126 (316)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~------------~~~~f~eP~ll 126 (316)
.+.|..|++.+..-...-++++++..+.-...+++.++..|... .+|++|...+. ...-++.-|++
T Consensus 246 ~~~ll~A~~~l~~~~~~~~liivG~g~~r~~~l~~~~~~~gl~~--~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~ 323 (425)
T PRK05749 246 EELVLDAHRALLKQFPNLLLILVPRHPERFKEVEELLKKAGLSY--VRRSQGEPPSADTDVLLGDTMGELGLLYAIADIA 323 (425)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEcCCChhhHHHHHHHHHhCCCcE--EEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEE
Confidence 34455555544332123356667766554345677777777653 34565544321 11124666877
Q ss_pred EEeCCC--CCchhHHHhhhcCCCEEEE
Q 021180 127 ILTDPR--TDHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 127 VV~DP~--~d~qaI~EAs~lnIPtIAL 151 (316)
|+.-.. .--+.+.||..+|+|+|+-
T Consensus 324 ~v~~S~~e~~g~~~lEAma~G~PVI~g 350 (425)
T PRK05749 324 FVGGSLVKRGGHNPLEPAAFGVPVISG 350 (425)
T ss_pred EECCCcCCCCCCCHHHHHHhCCCEEEC
Confidence 774322 2345689999999999973
No 85
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=55.02 E-value=1.3e+02 Score=26.66 Aligned_cols=97 Identities=15% Similarity=0.093 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcC-CceecCCccCCccCCcccccccCCceEEEeCCCC-Cchh
Q 021180 60 EKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTH-AHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT-DHQP 137 (316)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tG-a~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~-d~qa 137 (316)
+.|..+++.+..-...-.+.++|..........+.....+ ...| +|++. ......-++.-|++|+..-.. -...
T Consensus 204 ~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v--~~~g~--~~~~~~~~~~adi~i~ps~~e~~~~~ 279 (359)
T cd03808 204 DELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRV--EFLGF--RDDVPELLAAADVFVLPSYREGLPRV 279 (359)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceE--EEeec--cccHHHHHHhccEEEecCcccCcchH
Confidence 3344444443322233466777776544332221122222 1111 23332 222333456778777654331 1467
Q ss_pred HHHhhhcCCCEEEEecCCCCCCcc
Q 021180 138 IKEAALGNIPTIAFCDTDSPMRYV 161 (316)
Q Consensus 138 I~EAs~lnIPtIAL~DTds~~~~V 161 (316)
+-||..+|+|+|+ .|.....+++
T Consensus 280 ~~Ea~~~G~Pvi~-s~~~~~~~~i 302 (359)
T cd03808 280 LLEAMAMGRPVIA-TDVPGCREAV 302 (359)
T ss_pred HHHHHHcCCCEEE-ecCCCchhhh
Confidence 8899999999998 3444444443
No 86
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=53.64 E-value=44 Score=29.63 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=26.3
Q ss_pred cCCceEEEeC--CCCCchhHHHhhhcCCCEEEEecCC
Q 021180 121 NEPRLLILTD--PRTDHQPIKEAALGNIPTIAFCDTD 155 (316)
Q Consensus 121 ~eP~llVV~D--P~~d~qaI~EAs~lnIPtIAL~DTd 155 (316)
+.+|.||+.- +..-...+++|..-|||+|.+ |++
T Consensus 54 ~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~-d~~ 89 (257)
T PF13407_consen 54 QGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV-DSD 89 (257)
T ss_dssp TTESEEEEESSSTTTTHHHHHHHHHTTSEEEEE-SST
T ss_pred hcCCEEEecCCCHHHHHHHHHHHhhcCceEEEE-ecc
Confidence 5689888774 333467899999999999985 555
No 87
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=53.61 E-value=41 Score=29.93 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=34.8
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHH
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lL 182 (316)
+..|.||+.....+...++++...|+|+|.+ |++.+-..+.+... |...+...+...|
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~V~~---d~~~~g~~~~~~l 111 (264)
T cd06274 54 RQVDALIVAGSLPPDDPYYLCQKAGLPVVAL-DRPGDPSRFPSVVS---DNRDGAAELTREL 111 (264)
T ss_pred cCCCEEEEcCCCCchHHHHHHHhcCCCEEEe-cCccCCCCCCEEEE---ccHHHHHHHHHHH
Confidence 4568888876654444488888899999887 66554333444332 3344444444333
No 88
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=53.46 E-value=1.8e+02 Score=28.31 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=41.1
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCCCCCC-------cceEEecCCCCCchhHHHHHH
Q 021180 121 NEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSPMR-------YVDIGIPANNKGKHSIGCLFW 180 (316)
Q Consensus 121 ~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DTds~~~-------~VD~pIP~NndS~~SI~Li~~ 180 (316)
..-+++|++...-+ ..+++.|...|+++|+|++ +.++. ...+.||.+.-++.|...++-
T Consensus 65 ~~~dlvI~iS~SG~t~e~~~a~~~A~~~g~~ii~iT~-~g~L~~~a~~~~~~~i~vP~~~~~R~s~~~~~~ 134 (308)
T TIGR02128 65 DGKTLLIAVSYSGNTEETLSAVEEAKKKGAKVIAITS-GGRLEEMAKERGLDVIKIPKGLQPRAAFPYLLT 134 (308)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHcCCEEEEECC-CcHHHHHHHhcCCeEEEcCCCCCCeeeHHHHHH
Confidence 45678888864433 4567889999999999996 33222 355778999888888744433
No 89
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=53.42 E-value=57 Score=30.23 Aligned_cols=90 Identities=11% Similarity=0.064 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCc-ccccccCCceEEEeCCC-----
Q 021180 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPR----- 132 (316)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~-~~~~f~eP~llVV~DP~----- 132 (316)
...|.+|+..+..-...-+++++|..++.+ .++++++..|...-. +|+| ...+. ....++.-|++|+....
T Consensus 203 ~~~li~a~~~l~~~~~~~~l~ivG~g~~~~-~~~~~~~~~~~~~~v-~~~g-~~~~~~l~~~~~~ad~~v~ps~~~~~~~ 279 (367)
T cd05844 203 PLLLLEAFARLARRVPEVRLVIIGDGPLLA-ALEALARALGLGGRV-TFLG-AQPHAEVRELMRRARIFLQPSVTAPSGD 279 (367)
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEeCchHHH-HHHHHHHHcCCCCeE-EECC-CCCHHHHHHHHHhCCEEEECcccCCCCC
Confidence 344555555444322345677888765443 456667765532111 3443 23222 22335677887764321
Q ss_pred CC--chhHHHhhhcCCCEEEE
Q 021180 133 TD--HQPIKEAALGNIPTIAF 151 (316)
Q Consensus 133 ~d--~qaI~EAs~lnIPtIAL 151 (316)
.+ ...+.||..+|+|+|+-
T Consensus 280 ~E~~~~~~~EA~a~G~PvI~s 300 (367)
T cd05844 280 AEGLPVVLLEAQASGVPVVAT 300 (367)
T ss_pred ccCCchHHHHHHHcCCCEEEe
Confidence 11 46789999999999974
No 90
>PLN02846 digalactosyldiacylglycerol synthase
Probab=53.32 E-value=52 Score=34.06 Aligned_cols=92 Identities=13% Similarity=0.026 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCC
Q 021180 54 NLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT 133 (316)
Q Consensus 54 NL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~ 133 (316)
.-+|=+..|..|+..|..-...-+++++|..+.-.+ +++.++..|.. .++..|.. +.. .-+.--|+.|.... .
T Consensus 238 ~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~-L~~~a~~l~l~---~~vf~G~~-~~~-~~~~~~DvFv~pS~-~ 310 (462)
T PLN02846 238 VWSKGYKELLKLLHKHQKELSGLEVDLYGSGEDSDE-VKAAAEKLELD---VRVYPGRD-HAD-PLFHDYKVFLNPST-T 310 (462)
T ss_pred cccCCHHHHHHHHHHHHhhCCCeEEEEECCCccHHH-HHHHHHhcCCc---EEEECCCC-CHH-HHHHhCCEEEECCC-c
Confidence 445556667777665544223356788999887654 56677776642 33455642 322 22333376555553 4
Q ss_pred C--chhHHHhhhcCCCEEEEe
Q 021180 134 D--HQPIKEAALGNIPTIAFC 152 (316)
Q Consensus 134 d--~qaI~EAs~lnIPtIAL~ 152 (316)
+ -..+.||.-+|+|+|+.=
T Consensus 311 Et~g~v~lEAmA~G~PVVa~~ 331 (462)
T PLN02846 311 DVVCTTTAEALAMGKIVVCAN 331 (462)
T ss_pred ccchHHHHHHHHcCCcEEEec
Confidence 4 457789999999999983
No 91
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=53.23 E-value=60 Score=30.54 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCc-eecCCccCCccCCcccccccCCceEEEeCCC-CC
Q 021180 57 KTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAH-AIAGRHTPGTFTNQMQTSFNEPRLLILTDPR-TD 134 (316)
Q Consensus 57 kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~-~I~grw~pGtLTN~~~~~f~eP~llVV~DP~-~d 134 (316)
|-...|..|+..+..-...-++.++|....... +.+..+..+.. .| ++. | +......-++.-|++|.+.-. .-
T Consensus 217 K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~-~~~~~~~~~~~~~v--~~~-g-~~~~~~~~~~~ad~~v~~S~~Eg~ 291 (372)
T cd04949 217 KQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEK-LKELIEELGLEDYV--FLK-G-YTRDLDEVYQKAQLSLLTSQSEGF 291 (372)
T ss_pred cCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHH-HHHHHHHcCCcceE--EEc-C-CCCCHHHHHhhhhEEEeccccccc
Confidence 334444444444433222345677776654332 34444444432 11 133 3 344444456777888877643 22
Q ss_pred chhHHHhhhcCCCEEEE
Q 021180 135 HQPIKEAALGNIPTIAF 151 (316)
Q Consensus 135 ~qaI~EAs~lnIPtIAL 151 (316)
..++.||...|+|+|+.
T Consensus 292 ~~~~lEAma~G~PvI~~ 308 (372)
T cd04949 292 GLSLMEALSHGLPVISY 308 (372)
T ss_pred ChHHHHHHhCCCCEEEe
Confidence 56899999999999984
No 92
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=53.19 E-value=66 Score=33.35 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcc---CchhHHHHHHHHHHcCCceecCCccCCccCCcc---------------cccccC
Q 021180 61 KLQMAARVIVAIENPGDIIVQSA---RPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNE 122 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVst---r~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~---------------~~~f~e 122 (316)
.+..++..|.+- ..-++++|. +......+.+|++++|+.+++.----|.|-... ...+.+
T Consensus 196 ~~~~~~~~L~~A--~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~i~~~hp~~~G~~g~~~~~~~~~~~~~ 273 (572)
T PRK06456 196 ALKKAAEILINA--ERPIILVGTGVVWSNATPEVLELAELLHIPIVSTFPGKTAIPHDHPLYFGPMGYYGRAEASMAALE 273 (572)
T ss_pred HHHHHHHHHHhC--CCcEEEECCCCcccchHHHHHHHHHHhCCCEEEcCccCcCCCCCCccccccCCCCCCHHHHHHHHh
Confidence 345555555443 334667774 345678899999999998776432234443211 012478
Q ss_pred CceEEEeCCCCC
Q 021180 123 PRLLILTDPRTD 134 (316)
Q Consensus 123 P~llVV~DP~~d 134 (316)
.|+|+++..+-+
T Consensus 274 aDlvl~lG~~~~ 285 (572)
T PRK06456 274 SDAMLVVGARFS 285 (572)
T ss_pred CCEEEEECCCCc
Confidence 999999997654
No 93
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=53.03 E-value=56 Score=28.89 Aligned_cols=44 Identities=9% Similarity=0.118 Sum_probs=29.5
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEe
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (316)
+..|.||+.....+...++++...|||+|.+ |++.+...+++..
T Consensus 54 ~~vdgiIi~~~~~~~~~~~~l~~~~ipvV~~-~~~~~~~~~~~v~ 97 (265)
T cd06299 54 QRVDGIIVVPHEQSAEQLEDLLKRGIPVVFV-DREITGSPIPFVT 97 (265)
T ss_pred cCCCEEEEcCCCCChHHHHHHHhCCCCEEEE-ecccCCCCCCEEE
Confidence 4568888876555556789999999999866 5543333344443
No 94
>CHL00101 trpG anthranilate synthase component 2
Probab=52.91 E-value=53 Score=29.24 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=40.0
Q ss_pred EEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeC-CCC-----CchhHHHhhhcCCCEEEE
Q 021180 78 IIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PRT-----DHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 78 ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D-P~~-----d~qaI~EAs~lnIPtIAL 151 (316)
||+|....+...-+.+..+..|.....-+.-. .+.....-..||.||++. |.. ....+.++...++|++||
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~---~~~~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGI 78 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDE---IDLSKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGV 78 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCC---CCHHHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEE
Confidence 67777765544444455555665543322111 111122224689888885 211 134566666779999999
Q ss_pred e
Q 021180 152 C 152 (316)
Q Consensus 152 ~ 152 (316)
|
T Consensus 79 C 79 (190)
T CHL00101 79 C 79 (190)
T ss_pred c
Confidence 8
No 95
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=52.17 E-value=1.2e+02 Score=28.84 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=25.6
Q ss_pred cCCceEEEe--CCCCCchhHHHhhhcCCCEEEEecCC
Q 021180 121 NEPRLLILT--DPRTDHQPIKEAALGNIPTIAFCDTD 155 (316)
Q Consensus 121 ~eP~llVV~--DP~~d~qaI~EAs~lnIPtIAL~DTd 155 (316)
+..|.||+. |...+...++++...+||+|.+ |+.
T Consensus 80 ~~vdgiIi~~~~~~~~~~~l~~l~~~giPvV~v-d~~ 115 (330)
T PRK15395 80 KGVKALAINLVDPAAAPTVIEKARGQDVPVVFF-NKE 115 (330)
T ss_pred cCCCEEEEeccCHHHHHHHHHHHHHCCCcEEEE-cCC
Confidence 578988887 4434556789988999999988 543
No 96
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.83 E-value=55 Score=29.10 Aligned_cols=56 Identities=16% Similarity=0.057 Sum_probs=35.2
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHH
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lL 182 (316)
+.+|.||+..+..+...++++...|||+|.+ |.+.+ .+.+. ..|...+..+....|
T Consensus 54 ~~~dgiii~~~~~~~~~~~~~~~~~iPvv~~-~~~~~--~~~~V---~~d~~~ag~~a~~~L 109 (265)
T cd06285 54 RRVDGLILGDARSDDHFLDELTRRGVPFVLV-LRHAG--TSPAV---TGDDVLGGRLATRHL 109 (265)
T ss_pred cCCCEEEEecCCCChHHHHHHHHcCCCEEEE-ccCCC--CCCEE---EeCcHHHHHHHHHHH
Confidence 4578888877666667789999999999776 55433 22332 223445555554444
No 97
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=51.59 E-value=2e+02 Score=30.72 Aligned_cols=118 Identities=18% Similarity=0.161 Sum_probs=66.0
Q ss_pred hhCCCcEEEEccCch---hHHHHHHHHHHcC--C-ceecCCccCCccCCcccccccCCceEEEeCCCCC-----chhHHH
Q 021180 72 IENPGDIIVQSARPY---GQRAVLKFAKYTH--A-HAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD-----HQPIKE 140 (316)
Q Consensus 72 I~n~~~ILfVstr~~---~q~aV~kfA~~tG--a-~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d-----~qaI~E 140 (316)
+.+-.+|.|+|.... ++..-+|+-+-+. + .|-.+-|..|.+.. +. -.+-+.+|++.+... ...++|
T Consensus 493 l~~a~~i~~lGrG~~~~iA~E~ALKLkEi~~i~ae~~~~~E~~HGp~al-i~--~~~~~~VI~i~~~~~~~~~~~~~~~~ 569 (640)
T PTZ00295 493 LKNAKSMFILGKGLGYPIALEGALKIKEITYIHAEGFSGGALKHGPFAL-ID--KEKNTPVILIILDDEHKELMINAAEQ 569 (640)
T ss_pred HhCCCcEEEEECCCCHHHHHHHHHHHHHHhhhhhhhcChHHhhhhHHHH-hc--CCCCCeEEEEEcCCccHHHHHHHHHH
Confidence 356678888888653 4455555555432 1 23334455553311 10 012244555443322 467899
Q ss_pred hhhcCCCEEEEecCCCCC-Cc--ceEEecCCCCCchh--HHHHHHHHHHHHHHhhcCC
Q 021180 141 AALGNIPTIAFCDTDSPM-RY--VDIGIPANNKGKHS--IGCLFWLLARMVLQMRGTI 193 (316)
Q Consensus 141 As~lnIPtIAL~DTds~~-~~--VD~pIP~NndS~~S--I~Li~~lLaraVl~~rG~i 193 (316)
+...+-++|+|.+..+.+ .+ ..+.+|.+ .-... .-..+++|+..+-..||..
T Consensus 570 lk~rga~vi~It~~~~~l~~~ad~~i~ip~~-~~l~p~~~~ip~Qllay~la~~~G~d 626 (640)
T PTZ00295 570 VKARGAYIIVITDDEDLVKDFADEIILIPSN-GPLTALLAVIPLQLLAYEIAILRGIN 626 (640)
T ss_pred HHHcCCEEEEEecCCccccccCCeEEEeCCc-ccchHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999998765322 22 34456653 21222 2333688898888888865
No 98
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=50.85 E-value=55 Score=28.99 Aligned_cols=70 Identities=13% Similarity=0.231 Sum_probs=37.8
Q ss_pred EEEEccCch-hHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeC----CCCC---chhHHHhhhcCCCEE
Q 021180 78 IIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD----PRTD---HQPIKEAALGNIPTI 149 (316)
Q Consensus 78 ILfVstr~~-~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D----P~~d---~qaI~EAs~lnIPtI 149 (316)
||+|.+.-. ...++.-+. +.|.....-++-...+.. ..-..||.||+.. |..+ ...+++ ...++|++
T Consensus 2 il~id~~dsf~~nl~~~l~-~~~~~~~v~~~~~~~~~~---~~~~~~~~iilsgGP~~~~~~~~~~~~i~~-~~~~~PiL 76 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFC-ELGTEVMVKRNDELQLTD---IEQLAPSHLVISPGPCTPNEAGISLAVIRH-FADKLPIL 76 (191)
T ss_pred EEEEECCCchHHHHHHHHH-HCCCcEEEEeCCCCCHHH---HHhcCCCeEEEcCCCCChHhCCCchHHHHH-hcCCCCEE
Confidence 678877544 444555554 456554333333222211 1112689888885 2222 234444 45699999
Q ss_pred EEe
Q 021180 150 AFC 152 (316)
Q Consensus 150 AL~ 152 (316)
|||
T Consensus 77 GIC 79 (191)
T PRK06774 77 GVC 79 (191)
T ss_pred EEC
Confidence 998
No 99
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=50.66 E-value=97 Score=29.89 Aligned_cols=102 Identities=8% Similarity=0.078 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEccCc------------hhHHHHHHHHHHcCCceecCCccCCccCCc-ccccccC
Q 021180 56 GKTWEKLQMAARVIVAIENPGDIIVQSARP------------YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-MQTSFNE 122 (316)
Q Consensus 56 ~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~------------~~q~aV~kfA~~tGa~~I~grw~pGtLTN~-~~~~f~e 122 (316)
.|=+..|.+|+..+..-...-++++||... +.++.+.++....+...| .|+ |..... ....+..
T Consensus 224 ~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V--~f~-G~v~~~~~~~~l~~ 300 (396)
T cd03818 224 YRGFHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRV--HFL-GRVPYDQYLALLQV 300 (396)
T ss_pred ccCHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceE--EEe-CCCCHHHHHHHHHh
Confidence 344555666666554433345678888521 122333333332222111 233 333221 1223456
Q ss_pred CceEEEeC-CCCCchhHHHhhhcCCCEEEEecCCCCCCcc
Q 021180 123 PRLLILTD-PRTDHQPIKEAALGNIPTIAFCDTDSPMRYV 161 (316)
Q Consensus 123 P~llVV~D-P~~d~qaI~EAs~lnIPtIAL~DTds~~~~V 161 (316)
-|+.|+.. +..-...+-||..+|.|+|+ .|.....+.|
T Consensus 301 adv~v~~s~~e~~~~~llEAmA~G~PVIa-s~~~g~~e~i 339 (396)
T cd03818 301 SDVHVYLTYPFVLSWSLLEAMACGCLVVG-SDTAPVREVI 339 (396)
T ss_pred CcEEEEcCcccccchHHHHHHHCCCCEEE-cCCCCchhhc
Confidence 67766654 22223478999999999998 3544444443
No 100
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=50.65 E-value=35 Score=24.90 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceec
Q 021180 62 LQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA 104 (316)
Q Consensus 62 L~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~ 104 (316)
|.++.+.|..+..+..+.++.+.+...+-|.++++..|..++.
T Consensus 13 l~~~~~~l~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~ 55 (69)
T cd00291 13 VLKTKKALEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHEVLE 55 (69)
T ss_pred HHHHHHHHhcCCCCCEEEEEecCCcHHHHHHHHHHHcCCEEEE
Confidence 4455555666666666778888888888999999999987654
No 101
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=50.60 E-value=33 Score=31.41 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=64.7
Q ss_pred HHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHcCCceec-CCc--cCCccCCcccccccCCceEEEeCCCCCchhH-H
Q 021180 65 AARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA-GRH--TPGTFTNQMQTSFNEPRLLILTDPRTDHQPI-K 139 (316)
Q Consensus 65 Aa~~I~~I-~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~-grw--~pGtLTN~~~~~f~eP~llVV~DP~~d~qaI-~ 139 (316)
|..++..+ +.+.+|.+||..+. ..+..+++..|..++. .+. -.|.||-+..- .+++.....+.+ .
T Consensus 82 a~elv~~lk~~G~~v~iiSgg~~--~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g--------~~~~~~~K~~~l~~ 151 (212)
T COG0560 82 AEELVAALKAAGAKVVIISGGFT--FLVEPIAERLGIDYVVANELEIDDGKLTGRVVG--------PICDGEGKAKALRE 151 (212)
T ss_pred HHHHHHHHHHCCCEEEEEcCChH--HHHHHHHHHhCCchheeeEEEEeCCEEeceeee--------eecCcchHHHHHHH
Confidence 55556666 67788999998865 6888999999986532 222 11334443221 233333334455 4
Q ss_pred HhhhcCCC---EEEEecCCCCCC---cceEEecCCCCCc
Q 021180 140 EAALGNIP---TIAFCDTDSPMR---YVDIGIPANNKGK 172 (316)
Q Consensus 140 EAs~lnIP---tIAL~DTds~~~---~VD~pIP~NndS~ 172 (316)
=++..|++ ++|.-|+..|+. .++.+|-.|-+..
T Consensus 152 ~~~~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n~~~~ 190 (212)
T COG0560 152 LAAELGIPLEETVAYGDSANDLPMLEAAGLPIAVNPKPK 190 (212)
T ss_pred HHHHcCCCHHHeEEEcCchhhHHHHHhCCCCeEeCcCHH
Confidence 56677999 999999998875 4899999987744
No 102
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=50.22 E-value=42 Score=27.79 Aligned_cols=69 Identities=12% Similarity=0.175 Sum_probs=41.4
Q ss_pred HHHHHHHHhhCCCcEEEEcc---CchhHHHHHHHHHHcCCceecCCccCCccCCc--------------cc-ccccCCce
Q 021180 64 MAARVIVAIENPGDIIVQSA---RPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ--------------MQ-TSFNEPRL 125 (316)
Q Consensus 64 ~Aa~~I~~I~n~~~ILfVst---r~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~--------------~~-~~f~eP~l 125 (316)
.++..|..-+ +-++++|. +......+.+|++++|+.+++.-.-.|.|-.- .. ..+.+-|+
T Consensus 3 ~~~~~L~~A~--rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDl 80 (137)
T PF00205_consen 3 EAADLLSSAK--RPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADL 80 (137)
T ss_dssp HHHHHHHH-S--SEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSE
T ss_pred HHHHHHHhCC--CEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCE
Confidence 3444444433 33666766 34578899999999999887654333433321 11 12478899
Q ss_pred EEEeCCCCC
Q 021180 126 LILTDPRTD 134 (316)
Q Consensus 126 lVV~DP~~d 134 (316)
||++..+-+
T Consensus 81 vl~iG~~~~ 89 (137)
T PF00205_consen 81 VLAIGTRLS 89 (137)
T ss_dssp EEEESSSSS
T ss_pred EEEECCCCc
Confidence 999986553
No 103
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.10 E-value=86 Score=28.05 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=28.6
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCCC--CcceEEe
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPM--RYVDIGI 165 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~~--~~VD~pI 165 (316)
+.+|.||+.....+ ...++++...|||+|.+ |++.+. ..+++..
T Consensus 54 ~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~-~~~~~~~~~~~~~v~ 101 (282)
T cd06318 54 RGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVV-DSSINLEAGVVTQVQ 101 (282)
T ss_pred cCCCEEEEecCCccchHHHHHHHHHCCCCEEEe-cCCCCCCcCeEEEEe
Confidence 45888888754433 34678889999999987 554332 3344443
No 104
>PLN02335 anthranilate synthase
Probab=50.03 E-value=51 Score=30.37 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=42.2
Q ss_pred hCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeC-CC---CCchhHHHhhh--cCC
Q 021180 73 ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PR---TDHQPIKEAAL--GNI 146 (316)
Q Consensus 73 ~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D-P~---~d~qaI~EAs~--lnI 146 (316)
....+||+|........-+....+..|.....-++-... .....-..|+.||+.. |. ..-..++.... .++
T Consensus 16 ~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~---~~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~ 92 (222)
T PLN02335 16 KQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELT---VEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLV 92 (222)
T ss_pred CccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCC---HHHHHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCC
Confidence 456789999875544444555556678765444442211 1111113588888885 32 21123333333 359
Q ss_pred CEEEEe
Q 021180 147 PTIAFC 152 (316)
Q Consensus 147 PtIAL~ 152 (316)
|+.|+|
T Consensus 93 PiLGIC 98 (222)
T PLN02335 93 PLFGVC 98 (222)
T ss_pred CEEEec
Confidence 999997
No 105
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=49.31 E-value=1.1e+02 Score=32.16 Aligned_cols=106 Identities=19% Similarity=0.231 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCceecCCccCCccCCcccc---------------ccc
Q 021180 60 EKLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT---------------SFN 121 (316)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~---------------~f~ 121 (316)
+.|.+|+.+|..-+++ ++++|.. ....+.+.+||+++|+..++.-.--|.+-..-.. ...
T Consensus 188 ~~i~~aa~~L~~AkrP--vIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~gkg~~p~~hp~~lG~~g~~g~~~a~~~~~ 265 (550)
T COG0028 188 EAIRKAAELLAEAKRP--VILAGGGVRRAGASEELRELAEKLGAPVVTTLMGKGAVPEDHPLSLGMLGMHGTKAANEALE 265 (550)
T ss_pred HHHHHHHHHHHhCCCC--EEEECCCccccccHHHHHHHHHHHCCCEEEccCcCccCCCCCccccccccccccHHHHHHhh
Confidence 6788888888775544 6777763 3355788999999999877754444555333221 136
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCC-EEEEecCC----CCCCcceEEecCC
Q 021180 122 EPRLLILTDPRTDHQPIKEAALGNIP-TIAFCDTD----SPMRYVDIGIPAN 168 (316)
Q Consensus 122 eP~llVV~DP~~d~qaI~EAs~lnIP-tIAL~DTd----s~~~~VD~pIP~N 168 (316)
+-|+|+++..+-+-..-. -.....| .|-=+|.| .-...+|++|-++
T Consensus 266 ~aDlll~vG~rf~~~~~~-~~~f~~~~~ii~iDidp~ei~k~~~~~~~i~gD 316 (550)
T COG0028 266 EADLLLAVGARFDDRVTG-YSGFAPPAAIIHIDIDPAEIGKNYPVDVPIVGD 316 (550)
T ss_pred cCCEEEEecCCCcccccc-hhhhCCcCCEEEEeCChHHhCCCCCCCeeEecc
Confidence 799999998766532221 1111222 14444555 2223488888875
No 106
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=48.90 E-value=60 Score=28.94 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=34.0
Q ss_pred cCCceEEEeCCCCC-----chhHHHhhhcCCCEEEEecCCCCC-CcceEEecCCCCCchhHHHHHHHHH
Q 021180 121 NEPRLLILTDPRTD-----HQPIKEAALGNIPTIAFCDTDSPM-RYVDIGIPANNKGKHSIGCLFWLLA 183 (316)
Q Consensus 121 ~eP~llVV~DP~~d-----~qaI~EAs~lnIPtIAL~DTds~~-~~VD~pIP~NndS~~SI~Li~~lLa 183 (316)
+.+|.||++....+ ...+.++...+||+|.+ |++.+- ..+++... |.......+...|.
T Consensus 54 ~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i-~~~~~~~~~~~~V~~---d~~~~~~~~~~~l~ 118 (273)
T cd06292 54 RGVRGVVFISSLHADTHADHSHYERLAERGLPVVLV-NGRAPPPLKVPHVST---DDALAMRLAVRHLV 118 (273)
T ss_pred cCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEE-cCCCCCCCCCCEEEE---CcHHHHHHHHHHHH
Confidence 46788888754322 34588999999999986 555432 22444332 33444444444443
No 107
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=48.77 E-value=56 Score=28.99 Aligned_cols=58 Identities=14% Similarity=0.065 Sum_probs=35.0
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHHH
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 183 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lLa 183 (316)
+.+|.||+.....+...+++....+||+|.+ |++.+ ..+++.-. | ...+...+...|.
T Consensus 50 ~~vdgii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~-~~~~~V~~-d--~~~~~~~~~~~l~ 107 (261)
T cd06272 50 NRFDGVIIFGESASDVEYLYKIKLAIPVVSY-GVDYD-LKYPIVNV-D--NEKAMELAVLYLA 107 (261)
T ss_pred cCcCEEEEeCCCCChHHHHHHHHcCCCEEEE-cccCC-CCCCEEEE-C--hHHHHHHHHHHHH
Confidence 3578888887666656678888889999965 65543 23344322 2 3444444444443
No 108
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=48.65 E-value=2.8e+02 Score=27.46 Aligned_cols=112 Identities=10% Similarity=0.062 Sum_probs=58.7
Q ss_pred CCcEEEEccCc--hhHHHHHHHHHH-cCCceecCCccCCccCCcccccc--cCCceEEEeCCCCC----chhHHHhhhc-
Q 021180 75 PGDIIVQSARP--YGQRAVLKFAKY-THAHAIAGRHTPGTFTNQMQTSF--NEPRLLILTDPRTD----HQPIKEAALG- 144 (316)
Q Consensus 75 ~~~ILfVstr~--~~q~aV~kfA~~-tGa~~I~grw~pGtLTN~~~~~f--~eP~llVV~DP~~d----~qaI~EAs~l- 144 (316)
..+|+|+++.. +.-...+.+.++ +|..... ..+..|.......+ ....|+|.+...-+ ..+++.|+..
T Consensus 42 ~~~i~~~g~GsS~~a~~~~~~~~~~~~~i~v~~--~~~~e~~~~~~~~~~~~~~~lvi~iSqSGeT~etv~a~~~ak~~~ 119 (372)
T TIGR02815 42 NLRIVLTGAGTSAFIGDALAPWLASHTGLNVSA--VPTTDLVSNPRQYLDPTRPTLLVSFARSGNSPESVAAVELADQLL 119 (372)
T ss_pred CCEEEEEechHHHHHHHHHHHHHHHhcCCCEEE--EeCcccccccccccCCCCCeEEEEEeCCcCcHHHHHHHHHHHHhC
Confidence 45799988853 233333444444 4443211 23444332111111 12356666665444 4577888887
Q ss_pred -CCCEEEEecC-CCCCC-cce-----EEecCC----CCCchhHH-HHHHHHHHHHHH
Q 021180 145 -NIPTIAFCDT-DSPMR-YVD-----IGIPAN----NKGKHSIG-CLFWLLARMVLQ 188 (316)
Q Consensus 145 -nIPtIAL~DT-ds~~~-~VD-----~pIP~N----ndS~~SI~-Li~~lLaraVl~ 188 (316)
|+++|+|++. +|++. ..| +.|+++ .+|..+.. |...+++-..+.
T Consensus 120 ~g~~~i~it~~~~s~la~~ad~~~~~~~i~~~ag~~e~gva~Tksft~~l~al~~l~ 176 (372)
T TIGR02815 120 PECYHLVLTCNEEGALYRNAINRSNAFALLMPAESNDRSFAMTSSFSCMTLATLAVL 176 (372)
T ss_pred CCCcEEEEEcCCCCHHHHhhcccCceeEEEccCCCccceeeeHHHHHHHHHHHHHHH
Confidence 8999999875 55553 355 556644 34444442 444444444443
No 109
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=48.54 E-value=73 Score=29.83 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCC-ceecCCccCCccCCcccc----cccCCceEEEe--CCCCCchhHHHhhhcCCCEEEEecCCCCC
Q 021180 88 QRAVLKFAKYTHA-HAIAGRHTPGTFTNQMQT----SFNEPRLLILT--DPRTDHQPIKEAALGNIPTIAFCDTDSPM 158 (316)
Q Consensus 88 q~aV~kfA~~tGa-~~I~grw~pGtLTN~~~~----~f~eP~llVV~--DP~~d~qaI~EAs~lnIPtIAL~DTds~~ 158 (316)
.+.+++.++..|. ..+....-.+....|.+. --+.+|.|+|. |+..=..+|++|...|||+|.+ |++.+.
T Consensus 52 ~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~-d~~~~~ 128 (322)
T COG1879 52 RKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVDPDALTPAVKKAKAAGIPVVTV-DSDIPG 128 (322)
T ss_pred HHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEE-ecCCCC
Confidence 4556678888886 222211111222222211 12789999994 6767788999999999999988 454443
No 110
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=47.88 E-value=73 Score=28.30 Aligned_cols=42 Identities=29% Similarity=0.323 Sum_probs=27.5
Q ss_pred cCCceEEEeCCC--CCchhHHHhhhcCCCEEEEecCCCCCCcceE
Q 021180 121 NEPRLLILTDPR--TDHQPIKEAALGNIPTIAFCDTDSPMRYVDI 163 (316)
Q Consensus 121 ~eP~llVV~DP~--~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~ 163 (316)
+.+|.||+..+. .....++++...|||+|.+ |++.+...+.+
T Consensus 54 ~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~-~~~~~~~~~~~ 97 (273)
T cd06305 54 QKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAF-DVDSDNPKVNN 97 (273)
T ss_pred cCCCEEEEecCChhhhHHHHHHHHHcCCCEEEe-cCCCCCCccce
Confidence 357888887543 3356688999999999866 55443333343
No 111
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=47.47 E-value=51 Score=29.36 Aligned_cols=71 Identities=14% Similarity=0.298 Sum_probs=36.6
Q ss_pred EEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeC-C---CC---CchhHHHhhhcCCCEEE
Q 021180 78 IIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-P---RT---DHQPIKEAALGNIPTIA 150 (316)
Q Consensus 78 ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D-P---~~---d~qaI~EAs~lnIPtIA 150 (316)
||+|........-+..+-+..|...+.-++.. .+ .....-..||.||++. | .. +...++++ ..++|++|
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~--~~-~~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~-~~~~PvLG 77 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDS--LT-LQEIEALLPLLIVISPGPCTPNEAGISLEAIRHF-AGKLPILG 77 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCC--CC-HHHHHhcCCCEEEEcCCCCChhhcchhHHHHHHh-ccCCCEEE
Confidence 66777655444333444444465443322211 11 1111112488888874 3 11 23466666 66999999
Q ss_pred Ee
Q 021180 151 FC 152 (316)
Q Consensus 151 L~ 152 (316)
+|
T Consensus 78 IC 79 (188)
T TIGR00566 78 VC 79 (188)
T ss_pred EC
Confidence 98
No 112
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=47.03 E-value=63 Score=28.75 Aligned_cols=58 Identities=14% Similarity=-0.067 Sum_probs=34.5
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHH
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lL 182 (316)
+.+|.||++....+...++++...|||+|.+ |++.+-...++. ..|...+...+...|
T Consensus 54 ~~vdgii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~v---~~d~~~~~~~~~~~l 111 (268)
T cd06270 54 RRCDALILHSKALSDDELIELAAQVPPLVLI-NRHIPGLADRCI---WLDNEQGGYLATEHL 111 (268)
T ss_pred cCCCEEEEecCCCCHHHHHHHhhCCCCEEEE-eccCCCCCCCeE---EECcHHHHHHHHHHH
Confidence 5678888876544434488999999999887 554432223332 233445555544444
No 113
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=46.77 E-value=50 Score=30.01 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=17.1
Q ss_pred ccCCceEEEe--CCCCCchhHHHhhhcCCCE
Q 021180 120 FNEPRLLILT--DPRTDHQPIKEAALGNIPT 148 (316)
Q Consensus 120 f~eP~llVV~--DP~~d~qaI~EAs~lnIPt 148 (316)
+...++||.. |+..|.+.-++| ..++++
T Consensus 68 l~~adlViaaT~d~elN~~i~~~a-~~~~lv 97 (202)
T PRK06718 68 IVDAFLVIAATNDPRVNEQVKEDL-PENALF 97 (202)
T ss_pred cCCceEEEEcCCCHHHHHHHHHHH-HhCCcE
Confidence 3455777665 455566666677 557654
No 114
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=46.32 E-value=58 Score=29.88 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCch---hHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC-
Q 021180 59 WEKLQMAARVIVAIENPGDIIVQSARPY---GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD- 134 (316)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~ILfVstr~~---~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d- 134 (316)
...|..|++.+.....+-+++++|..+. ....+.+.++..+..- +=+|+|. .+.....++.-|++|+.....+
T Consensus 200 ~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~-~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~ 276 (355)
T cd03819 200 QEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQD-RVTFVGH--CSDMPAAYALADIVVSASTEPEA 276 (355)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcc-eEEEcCC--cccHHHHHHhCCEEEecCCCCCC
Confidence 3444444444443223456778887543 2333444555544321 0124433 2223344667788887763333
Q ss_pred -chhHHHhhhcCCCEEEEecCCCCCC
Q 021180 135 -HQPIKEAALGNIPTIAFCDTDSPMR 159 (316)
Q Consensus 135 -~qaI~EAs~lnIPtIAL~DTds~~~ 159 (316)
...+.||..+|+|+|+- |.....+
T Consensus 277 ~~~~l~EA~a~G~PvI~~-~~~~~~e 301 (355)
T cd03819 277 FGRTAVEAQAMGRPVIAS-DHGGARE 301 (355)
T ss_pred CchHHHHHHhcCCCEEEc-CCCCcHH
Confidence 46899999999999975 4433333
No 115
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=46.09 E-value=66 Score=28.08 Aligned_cols=33 Identities=0% Similarity=0.047 Sum_probs=21.8
Q ss_pred CCceEEEeCCCCCchhHHHhhhcC----CCEEEEecC
Q 021180 122 EPRLLILTDPRTDHQPIKEAALGN----IPTIAFCDT 154 (316)
Q Consensus 122 eP~llVV~DP~~d~qaI~EAs~ln----IPtIAL~DT 154 (316)
.|+.|++.+...-.-+++.+...| +.+|++.|+
T Consensus 181 ~~~~i~~~~d~~a~~~~~~l~~~g~~~~i~ivg~d~~ 217 (267)
T cd01536 181 DIDAIFAANDSMALGAVAALKAAGRKGDVKIVGVDGS 217 (267)
T ss_pred CccEEEEecCCchHHHHHHHHhcCCCCCceEEecCCC
Confidence 367888887555555666666665 677777665
No 116
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=45.93 E-value=2.5e+02 Score=29.62 Aligned_cols=107 Identities=17% Similarity=0.235 Sum_probs=58.3
Q ss_pred ceeeecCCccccCHHHHHHHHHHHHHHHHHh-h--CCCcEEEEcc-Cc--hhHHHHHHHHHH-cCCceecCCcc----CC
Q 021180 42 VFKRRNDGIYIINLGKTWEKLQMAARVIVAI-E--NPGDIIVQSA-RP--YGQRAVLKFAKY-THAHAIAGRHT----PG 110 (316)
Q Consensus 42 Iyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~--n~~~ILfVst-r~--~~q~aV~kfA~~-tGa~~I~grw~----pG 110 (316)
-++|++++..-|..+..+. .++..|..+ + .+..|.++.+ +. ....++.+|+.. .|...+..+.. ++
T Consensus 57 P~~R~~g~~~~isWdeAl~---~ia~~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 133 (671)
T TIGR01591 57 PLIREGDKFREVSWDEAIS---YIAEKLKEIKEKYGPDSIGFIGSSRGTNEENYLLQKLARAVIGTNNVDNCARVCHGPS 133 (671)
T ss_pred CeEcCCCCEEEccHHHHHH---HHHHHHHHHHHhhCCCeEEEEecCCcccHHHHHHHHHHHHhcCCccccCCCCceehhh
Confidence 3344433445566655544 344445554 2 3456766544 32 234567889886 78654433211 11
Q ss_pred ---------c-cCCcccccccCCceEEEe--CCCCCc----hhHHHhhhcCCCEEEE
Q 021180 111 ---------T-FTNQMQTSFNEPRLLILT--DPRTDH----QPIKEAALGNIPTIAF 151 (316)
Q Consensus 111 ---------t-LTN~~~~~f~eP~llVV~--DP~~d~----qaI~EAs~lnIPtIAL 151 (316)
. ..+.....+..-|+||+. ||...+ +.|++|.+-|..+|.|
T Consensus 134 ~~~~~~~~G~~~~~~~~~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvi 190 (671)
T TIGR01591 134 VAGLKQTVGIGAMSNTISEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVI 190 (671)
T ss_pred hHHHHHhhCCCCCCCCHHHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEE
Confidence 0 001111235667898888 565553 4568898889888877
No 117
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.70 E-value=65 Score=28.66 Aligned_cols=41 Identities=24% Similarity=0.179 Sum_probs=27.7
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceE
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDI 163 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~ 163 (316)
+..|.||+..... ...+.++...+||+|. +|.+.+...+.+
T Consensus 57 ~~vdgiii~~~~~-~~~~~~l~~~~ipvV~-~~~~~~~~~~~~ 97 (268)
T cd06277 57 GKVDGIILLGGIS-TEYIKEIKELGIPFVL-VDHYIPNEKADC 97 (268)
T ss_pred CCCCEEEEeCCCC-hHHHHHHhhcCCCEEE-EccCCCCCCCCE
Confidence 4578888876443 3458888889999995 577655444444
No 118
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=45.25 E-value=2e+02 Score=26.05 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=48.7
Q ss_pred cEEEEccC----chhHHHHHHHHHHcCCceecCCcc------CCccCC---------cccc----cc---cCCceEEEeC
Q 021180 77 DIIVQSAR----PYGQRAVLKFAKYTHAHAIAGRHT------PGTFTN---------QMQT----SF---NEPRLLILTD 130 (316)
Q Consensus 77 ~ILfVstr----~~~q~aV~kfA~~tGa~~I~grw~------pGtLTN---------~~~~----~f---~eP~llVV~D 130 (316)
-++++|.. ....+.+.+|+++.|...+..-.. -|.+.+ .-+. .+ ..-|+||++.
T Consensus 37 PlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~~~~lg~lg~~~~~p~~e~~~g~~~~DlvlfvG 116 (171)
T PRK00945 37 PLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAKYINLHELTNYLKDPNWKGLDGNGNYDLVIFIG 116 (171)
T ss_pred cEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCCcccHHHHHhhccCchhhhhcCCCCcCEEEEec
Confidence 36677762 345677889999999876654331 122222 2111 13 5889999998
Q ss_pred CCCC--chhHHHhh-hcCCCEEEEecCCC
Q 021180 131 PRTD--HQPIKEAA-LGNIPTIAFCDTDS 156 (316)
Q Consensus 131 P~~d--~qaI~EAs-~lnIPtIAL~DTds 156 (316)
.+.. .|.|.--+ ..++-+|+||.--.
T Consensus 117 ~~~~~~~~~l~~lk~f~~~~~~~~~~~y~ 145 (171)
T PRK00945 117 VTYYYASQGLSALKHFSPLKTITIDRYYH 145 (171)
T ss_pred CCchhHHHHHHHHhhcCCceEEEecCCcC
Confidence 6655 33443333 34699999996543
No 119
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=44.85 E-value=61 Score=34.86 Aligned_cols=74 Identities=20% Similarity=0.224 Sum_probs=56.7
Q ss_pred ceEEEeCCCCC----chhHHHhhhcCCCEEEEecCCCC-C-CcceEEecC---------CCCCchhHHHHHHHHHHHHHH
Q 021180 124 RLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSP-M-RYVDIGIPA---------NNKGKHSIGCLFWLLARMVLQ 188 (316)
Q Consensus 124 ~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DTds~-~-~~VD~pIP~---------NndS~~SI~Li~~lLaraVl~ 188 (316)
+|+|.+.+.-+ ..|+++|+..|.++++|||..-+ + +-.|+.++- -.|+..|--+.+++|+-.+-+
T Consensus 332 ~L~I~ISQSGETaDTl~ALr~ak~~G~~tlaItNv~gSti~Resd~~l~~~AGpEigVAsTKaftaQl~~L~lLal~~a~ 411 (597)
T COG0449 332 TLVIAISQSGETADTLAALRLAKEQGAKTLAITNVPGSTIARESDHTLLIRAGPEIGVASTKAFTAQVLALYLLALYLAK 411 (597)
T ss_pred cEEEEEccCcccHHHHHHHHHHHHcCCCEEEEEecCCChhhcccceEEEeccCCceeeecchhHHHHHHHHHHHHHHHhH
Confidence 56666665444 67999999999999999987443 2 347777654 457777888889999999999
Q ss_pred hhcCCCCCC
Q 021180 189 MRGTIRPGH 197 (316)
Q Consensus 189 ~rG~i~~~~ 197 (316)
.||+++.++
T Consensus 412 ~~g~i~~~~ 420 (597)
T COG0449 412 QRGTISEEE 420 (597)
T ss_pred hhCccchhH
Confidence 999887554
No 120
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=43.85 E-value=55 Score=24.60 Aligned_cols=41 Identities=12% Similarity=0.033 Sum_probs=31.2
Q ss_pred HHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceec
Q 021180 64 MAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA 104 (316)
Q Consensus 64 ~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~ 104 (316)
++.+.+..+..+..+.++.+.+....-|.++++..|...+.
T Consensus 15 ~~kkal~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~ 55 (69)
T cd03422 15 ATLEALPSLKPGEILEVISDCPQSINNIPIDARNHGYKVLA 55 (69)
T ss_pred HHHHHHHcCCCCCEEEEEecCchHHHHHHHHHHHcCCEEEE
Confidence 34444555656666788888999999999999999988753
No 121
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=43.00 E-value=39 Score=30.22 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=27.9
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCCCCcceEE
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (316)
+.+|.||+.....+ ...+.++...|||+|.+ |++.+...+.+.
T Consensus 59 ~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~-~~~~~~~~~~~v 103 (272)
T cd06300 59 QGVDAIIINPASPTALNPVIEEACEAGIPVVSF-DGTVTTPCAYNV 103 (272)
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEE-ecCCCCCceeEe
Confidence 35788888764433 34678888999999988 444332334443
No 122
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=42.67 E-value=83 Score=28.34 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=23.2
Q ss_pred cCCceEEEeCCCCCch-hHHHhhhcCCCEEEE
Q 021180 121 NEPRLLILTDPRTDHQ-PIKEAALGNIPTIAF 151 (316)
Q Consensus 121 ~eP~llVV~DP~~d~q-aI~EAs~lnIPtIAL 151 (316)
+.+|.||+.....+.. .++++...|||+|.+
T Consensus 56 ~~vdgiI~~~~~~~~~~~~~~~~~~giPvV~~ 87 (268)
T cd06306 56 WGADAILLGAVSPDGLNEILQQVAASIPVIAL 87 (268)
T ss_pred cCCCEEEEcCCChhhHHHHHHHHHCCCCEEEe
Confidence 4688888875443332 489999999999988
No 123
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=42.64 E-value=75 Score=30.72 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCce-ecCCccCCccCC-cccccccCCceEEEeCC
Q 021180 54 NLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHA-IAGRHTPGTFTN-QMQTSFNEPRLLILTDP 131 (316)
Q Consensus 54 NL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~-I~grw~pGtLTN-~~~~~f~eP~llVV~DP 131 (316)
+-.|=.+.|..|++.+..-...-.++++|..+. ...+++..++.|..- | +|+ |.+++ .....+..-|++++..-
T Consensus 203 ~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v--~~~-G~~~~~~~~~~l~~ad~~v~pS~ 278 (398)
T cd03796 203 VYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPK-RILLEEMREKYNLQDRV--ELL-GAVPHERVRDVLVQGHIFLNTSL 278 (398)
T ss_pred chhcCHHHHHHHHHHHHhhCCCEEEEEEeCCch-HHHHHHHHHHhCCCCeE--EEe-CCCCHHHHHHHHHhCCEEEeCCh
Confidence 344445556666665544323456777887654 334556666655321 1 233 44443 22333566677776553
Q ss_pred CCC-chhHHHhhhcCCCEEEEecCCC
Q 021180 132 RTD-HQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 132 ~~d-~qaI~EAs~lnIPtIAL~DTds 156 (316)
.+. ...+.||..+|.|+|+ .|...
T Consensus 279 ~E~~g~~~~EAma~G~PVI~-s~~gg 303 (398)
T cd03796 279 TEAFCIAIVEAASCGLLVVS-TRVGG 303 (398)
T ss_pred hhccCHHHHHHHHcCCCEEE-CCCCC
Confidence 221 3588999999999988 34433
No 124
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=42.16 E-value=88 Score=28.18 Aligned_cols=71 Identities=17% Similarity=0.268 Sum_probs=39.1
Q ss_pred EEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeC-CCC---C---chhHHHhhhcCCCEEE
Q 021180 78 IIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PRT---D---HQPIKEAALGNIPTIA 150 (316)
Q Consensus 78 ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D-P~~---d---~qaI~EAs~lnIPtIA 150 (316)
||+|.+.-....-+..+.++.|.....-|+....+ .......||.||+.. |.. . ...++ ....++|++|
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~---~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~-~~~~~~PvLG 77 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTI---SDIENMKPDFLMISPGPCSPNEAGISMEVIR-YFAGKIPIFG 77 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCH---HHHhhCCCCEEEECCCCCChHhCCCchHHHH-HhcCCCCEEE
Confidence 78888865544444455555676554444332221 111223589998885 322 1 22333 3346899999
Q ss_pred Ee
Q 021180 151 FC 152 (316)
Q Consensus 151 L~ 152 (316)
||
T Consensus 78 IC 79 (195)
T PRK07649 78 VC 79 (195)
T ss_pred Ec
Confidence 97
No 125
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=42.03 E-value=45 Score=34.37 Aligned_cols=65 Identities=14% Similarity=0.035 Sum_probs=47.6
Q ss_pred CccccCHHHHHHHHHHHHHHHHHhh--CCCcEEEEccCchhHHHHHHHHHHcCC----------ceecCCccCCccC
Q 021180 49 GIYIINLGKTWEKLQMAARVIVAIE--NPGDIIVQSARPYGQRAVLKFAKYTHA----------HAIAGRHTPGTFT 113 (316)
Q Consensus 49 Gi~IINL~kT~ekL~~Aa~~I~~I~--n~~~ILfVstr~~~q~aV~kfA~~tGa----------~~I~grw~pGtLT 113 (316)
..|..|+..|.+.+.++..++..+. ...+|.|+++...+....+|||.+.+. -++.+.|-|++|-
T Consensus 88 ~~hs~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlg 164 (433)
T KOG1401|consen 88 LGHSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLG 164 (433)
T ss_pred heeccCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchh
Confidence 4588899999996666655555553 335789999999999999999998533 2456667776654
No 126
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=41.56 E-value=1e+02 Score=27.55 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=24.2
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCC
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTD 155 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTd 155 (316)
+.+|.||+.....+ ...++++...+||+|.+ |++
T Consensus 55 ~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~-~~~ 90 (270)
T cd06308 55 QGVDLLIISPNEAAPLTPVVEEAYRAGIPVILL-DRK 90 (270)
T ss_pred hCCCEEEEecCchhhchHHHHHHHHCCCCEEEe-CCC
Confidence 45788888754433 45678888899999966 443
No 127
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=41.56 E-value=75 Score=23.48 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=24.8
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEe
Q 021180 120 FNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFC 152 (316)
Q Consensus 120 f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~ 152 (316)
+.+=|++|+++.... ..++++++..|.++|+|+
T Consensus 45 ~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 45 LRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 455677888764433 456789999999999998
No 128
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=41.52 E-value=34 Score=30.71 Aligned_cols=86 Identities=19% Similarity=0.250 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhh-C--CCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCccc--ccccCCceEEEeCCCCCch
Q 021180 62 LQMAARVIVAIE-N--PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ--TSFNEPRLLILTDPRTDHQ 136 (316)
Q Consensus 62 L~~Aa~~I~~I~-n--~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~--~~f~eP~llVV~DP~~d~q 136 (316)
+..+..+|.++. + +..|++..+.+.+.+.+.+.... .+...+.|=-+--... .+...|+++|++...-=..
T Consensus 34 ~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~----~v~~~~~P~D~~~~~~rfl~~~~P~~~i~~EtElWPn 109 (186)
T PF04413_consen 34 VNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD----RVDVQYLPLDFPWAVRRFLDHWRPDLLIWVETELWPN 109 (186)
T ss_dssp HHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG----G-SEEE---SSHHHHHHHHHHH--SEEEEES----HH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC----CeEEEEeCccCHHHHHHHHHHhCCCEEEEEccccCHH
Confidence 445666777773 2 45677766667777655433211 1112233421111011 1236899999998777778
Q ss_pred hHHHhhhcCCCEEEE
Q 021180 137 PIKEAALGNIPTIAF 151 (316)
Q Consensus 137 aI~EAs~lnIPtIAL 151 (316)
.|++|.+.|||++-+
T Consensus 110 ll~~a~~~~ip~~Lv 124 (186)
T PF04413_consen 110 LLREAKRRGIPVVLV 124 (186)
T ss_dssp HHHH-----S-EEEE
T ss_pred HHHHHhhcCCCEEEE
Confidence 999999999999754
No 129
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=41.50 E-value=1.6e+02 Score=30.26 Aligned_cols=96 Identities=19% Similarity=0.159 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHH-hhCCCcEEEEccCc----hhHHHHHHHHHHcCCceecCCccCCccCCcc----cccccCCceEE
Q 021180 57 KTWEKLQMAARVIVA-IENPGDIIVQSARP----YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM----QTSFNEPRLLI 127 (316)
Q Consensus 57 kT~ekL~~Aa~~I~~-I~n~~~ILfVstr~----~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~----~~~f~eP~llV 127 (316)
.....+.+|+..|.. +++..+|++++-.- .+.-++.++..+.|.. ...++|..|+--. +......++||
T Consensus 17 ~~l~~~~~a~~~i~~ai~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~--~~~~ip~~~~~~~g~~~~~~~~~~~liI 94 (491)
T COG0608 17 FLLKDMEKAAARIAEAIEKGEKILIYGDYDADGITSAAILAKALRRLGAD--VDYYIPNRFEEGYGAIRKLKEEGADLII 94 (491)
T ss_pred HHHhhHHHHHHHHHHHHHcCCEEEEEEecCcccHHHHHHHHHHHHHcCCc--eEEEeCCCccccchHHHHHHhcCCCEEE
Confidence 456677788888765 68899999988753 3445556777778842 2223444444422 23446678999
Q ss_pred EeCCCCC-chhHHHhhhcCCCEEEEecCC
Q 021180 128 LTDPRTD-HQPIKEAALGNIPTIAFCDTD 155 (316)
Q Consensus 128 V~DP~~d-~qaI~EAs~lnIPtIAL~DTd 155 (316)
.+|.... +..++.++..|+-||-+ |-.
T Consensus 95 tvD~G~~~~~~i~~~~~~g~~vIVt-DHH 122 (491)
T COG0608 95 TVDNGSGSLEEIARAKELGIDVIVT-DHH 122 (491)
T ss_pred EECCCcccHHHHHHHHhCCCcEEEE-CCC
Confidence 9996544 66777888778888754 544
No 130
>PRK10637 cysG siroheme synthase; Provisional
Probab=41.28 E-value=67 Score=32.77 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=19.5
Q ss_pred CceEEEe--CCCCCchhHHHhhhcCCCE
Q 021180 123 PRLLILT--DPRTDHQPIKEAALGNIPT 148 (316)
Q Consensus 123 P~llVV~--DP~~d~qaI~EAs~lnIPt 148 (316)
.+++|+. |+..|++..++|...||++
T Consensus 73 ~~lv~~at~d~~~n~~i~~~a~~~~~lv 100 (457)
T PRK10637 73 CWLAIAATDDDAVNQRVSEAAEARRIFC 100 (457)
T ss_pred CEEEEECCCCHHHhHHHHHHHHHcCcEE
Confidence 4555444 5677889999999999875
No 131
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.89 E-value=58 Score=29.57 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=28.6
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEE
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (316)
+.+|.||++....+...++++...|||+|.+ |++.+ ..+++.
T Consensus 55 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~-~~~~~v 96 (283)
T cd06279 55 ALVDGFIVYGVPRDDPLVAALLRRGLPVVVV-DQPLP-PGVPSV 96 (283)
T ss_pred cCCCEEEEeCCCCChHHHHHHHHcCCCEEEE-ecCCC-CCCCEE
Confidence 4568888775444456789999999999866 66554 334443
No 132
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=40.78 E-value=95 Score=27.65 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=23.7
Q ss_pred ccCCceEEEeCCCC------------CchhHHHhhhcCCCEEEEecC
Q 021180 120 FNEPRLLILTDPRT------------DHQPIKEAALGNIPTIAFCDT 154 (316)
Q Consensus 120 f~eP~llVV~DP~~------------d~qaI~EAs~lnIPtIAL~DT 154 (316)
+..+|+||+.-+.. -...|+++...++|++++|=-
T Consensus 35 l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G 81 (199)
T PRK13181 35 IAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLG 81 (199)
T ss_pred hccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHh
Confidence 34567777654322 135677877889999999853
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=40.73 E-value=1.5e+02 Score=32.35 Aligned_cols=113 Identities=15% Similarity=0.089 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCC
Q 021180 54 NLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT 133 (316)
Q Consensus 54 NL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~ 133 (316)
+-.|=...|.+|+..+..-...-+++|||..++. .-++++++..|..-.. +| .|...| ...-++.-|++|+....+
T Consensus 527 ~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~-~~L~~l~~~lgL~~~V-~f-lG~~~d-v~~ll~aaDv~VlpS~~E 602 (694)
T PRK15179 527 DDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLL-ESVREFAQRLGMGERI-LF-TGLSRR-VGYWLTQFNAFLLLSRFE 602 (694)
T ss_pred CccCCHHHHHHHHHHHHHHCcCeEEEEEccCcch-HHHHHHHHHcCCCCcE-EE-cCCcch-HHHHHHhcCEEEeccccc
Confidence 3444445566665544332223567788876543 3455677766642100 13 333222 333356668877765332
Q ss_pred C-chhHHHhhhcCCCEEEEecCCCCCCcc-----eEEecCCCCC
Q 021180 134 D-HQPIKEAALGNIPTIAFCDTDSPMRYV-----DIGIPANNKG 171 (316)
Q Consensus 134 d-~qaI~EAs~lnIPtIAL~DTds~~~~V-----D~pIP~NndS 171 (316)
. ...+-||..+|+|+|+- |.....+.| -+-+|.+|..
T Consensus 603 gfp~vlLEAMA~G~PVVat-~~gG~~EiV~dg~~GlLv~~~d~~ 645 (694)
T PRK15179 603 GLPNVLIEAQFSGVPVVTT-LAGGAGEAVQEGVTGLTLPADTVT 645 (694)
T ss_pred cchHHHHHHHHcCCeEEEE-CCCChHHHccCCCCEEEeCCCCCC
Confidence 2 56888999999999994 444444433 3556666543
No 134
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=40.67 E-value=1.1e+02 Score=27.34 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=39.6
Q ss_pred CCcEEEEccCch-hHHHHHHHHHHcCCceecCCccCCccCCcc-cccccCCceEEEeCCCC-CchhHHHhhhcCCCEEEE
Q 021180 75 PGDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQM-QTSFNEPRLLILTDPRT-DHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 75 ~~~ILfVstr~~-~q~aV~kfA~~tGa~~I~grw~pGtLTN~~-~~~f~eP~llVV~DP~~-d~qaI~EAs~lnIPtIAL 151 (316)
.-+++++|.... ....++.+++..+..... +|+ |...... ..-++.-|++|+..-.. =...+-||..+|+|+|+-
T Consensus 234 ~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v-~~~-g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~ 311 (375)
T cd03821 234 DWHLVIAGPDEGGYRAELKQIAAALGLEDRV-TFT-GMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTT 311 (375)
T ss_pred CeEEEEECCCCcchHHHHHHHHHhcCccceE-EEc-CCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEc
Confidence 446677776543 233333333444432100 232 3333211 22246667777654321 145789999999999984
No 135
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=40.38 E-value=1.5e+02 Score=28.73 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=17.4
Q ss_pred hhHHHhhhcCCCEEEEecCCC
Q 021180 136 QPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 136 qaI~EAs~lnIPtIAL~DTds 156 (316)
+...+|+..+||||||.|--+
T Consensus 166 ~lf~~a~~~gi~tigIGDGGN 186 (291)
T PF14336_consen 166 DLFLAAKEPGIPTIGIGDGGN 186 (291)
T ss_pred HHHHHhhcCCCCEEEECCCch
Confidence 466788889999999999754
No 136
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=40.19 E-value=3e+02 Score=25.90 Aligned_cols=115 Identities=14% Similarity=0.072 Sum_probs=69.1
Q ss_pred ecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCccc--------
Q 021180 46 RNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ-------- 117 (316)
Q Consensus 46 R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~-------- 117 (316)
|-|+-.-|=+.....+|.+|-.+. +++.+|.|+....... .+ +..+..|-..+. +++. +++.+
T Consensus 5 r~Da~~~iG~GHv~Rcl~LA~~l~---~~g~~v~f~~~~~~~~-~~-~~i~~~g~~v~~---~~~~-~~~~~d~~~~~~~ 75 (279)
T TIGR03590 5 RADASSEIGLGHVMRCLTLARALH---AQGAEVAFACKPLPGD-LI-DLLLSAGFPVYE---LPDE-SSRYDDALELINL 75 (279)
T ss_pred EecCCccccccHHHHHHHHHHHHH---HCCCEEEEEeCCCCHH-HH-HHHHHcCCeEEE---ecCC-CchhhhHHHHHHH
Confidence 446667777777777777765442 4577899998875432 12 222344433221 1221 11211
Q ss_pred ccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCC
Q 021180 118 TSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANN 169 (316)
Q Consensus 118 ~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nn 169 (316)
..-..||+||+.....+..-.+-.+..+.+++.|=|.+.-....|+.|=.|-
T Consensus 76 l~~~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~~~~D~vin~~~ 127 (279)
T TIGR03590 76 LEEEKFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADRPHDCDLLLDQNL 127 (279)
T ss_pred HHhcCCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCCCcCCCEEEeCCC
Confidence 0113799998888877765555554567788888887766668888886654
No 137
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=40.12 E-value=1.1e+02 Score=27.82 Aligned_cols=76 Identities=9% Similarity=0.014 Sum_probs=39.9
Q ss_pred CCcEEEEccCchhHHHHHH----HHHHcCCceecCCccCCccCCc-ccccccCCceEEEeCCCC---CchhHHHhhhcCC
Q 021180 75 PGDIIVQSARPYGQRAVLK----FAKYTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPRT---DHQPIKEAALGNI 146 (316)
Q Consensus 75 ~~~ILfVstr~~~q~aV~k----fA~~tGa~~I~grw~pGtLTN~-~~~~f~eP~llVV~DP~~---d~qaI~EAs~lnI 146 (316)
.-.++++|..........+ .++..|... +=.|++|.+... ...-++.-|++|...... -...+.||..+|+
T Consensus 216 ~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~-~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~ 294 (366)
T cd03822 216 DVRLLVAGETHPDLERYRGEAYALAERLGLAD-RVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGK 294 (366)
T ss_pred CeEEEEeccCccchhhhhhhhHhHHHhcCCCC-cEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCC
Confidence 3456677764332222211 134444321 113555544332 233356667776654322 2457899999999
Q ss_pred CEEEE
Q 021180 147 PTIAF 151 (316)
Q Consensus 147 PtIAL 151 (316)
|+|+.
T Consensus 295 PvI~~ 299 (366)
T cd03822 295 PVIST 299 (366)
T ss_pred CEEec
Confidence 99974
No 138
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.90 E-value=77 Score=28.09 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=24.6
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCC
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTds 156 (316)
+.+|.||+.....+ ...++++...+||+|.+ |++.
T Consensus 55 ~~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~-~~~~ 91 (275)
T cd06317 55 QKVDGIILWPTDGQAYIPGLRKAKQAGIPVVIT-NSNI 91 (275)
T ss_pred cCCCEEEEecCCccccHHHHHHHHHCCCcEEEe-CCCC
Confidence 46788888754333 35678999999999954 5544
No 139
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=39.89 E-value=1e+02 Score=27.57 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=23.2
Q ss_pred CCceEEEeCCCCC--chhHHHhhhcCCCEEEEe
Q 021180 122 EPRLLILTDPRTD--HQPIKEAALGNIPTIAFC 152 (316)
Q Consensus 122 eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~ 152 (316)
..|.||+.....+ ...++++.+.|||+|.+-
T Consensus 58 ~vdgiii~~~~~~~~~~~i~~~~~~~ipvV~~~ 90 (275)
T cd06307 58 RSDGVALVAPDHPQVRAAVARLAAAGVPVVTLV 90 (275)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence 5788888765433 356889899999999774
No 140
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=39.55 E-value=63 Score=29.96 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=25.2
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPM 158 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~ 158 (316)
..||+|| +| .+..+..=|...+||+|.|.|-....
T Consensus 93 ~~pDlVI-sD--~~~~~~~aa~~~giP~i~i~~~~~~~ 127 (318)
T PF13528_consen 93 FRPDLVI-SD--FYPLAALAARRAGIPVIVISNQYWFL 127 (318)
T ss_pred cCCCEEE-Ec--ChHHHHHHHHhcCCCEEEEEehHHcc
Confidence 4799775 55 23345677888999999998776543
No 141
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=39.47 E-value=92 Score=28.81 Aligned_cols=29 Identities=21% Similarity=0.127 Sum_probs=21.1
Q ss_pred CceEEEe--CCCCCchhHHHhhhcCCCEEEE
Q 021180 123 PRLLILT--DPRTDHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 123 P~llVV~--DP~~d~qaI~EAs~lnIPtIAL 151 (316)
+.++|+. |+..|+...+.|...+||+=..
T Consensus 73 ~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 73 AFLVIAATDDEELNERIAKAARERRILVNVV 103 (210)
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhCCceecc
Confidence 5555554 4666788889999999987544
No 142
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=39.28 E-value=1.2e+02 Score=31.63 Aligned_cols=73 Identities=11% Similarity=0.209 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCceecCCccCCccCCccc--------ccccCCceEEE
Q 021180 60 EKLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ--------TSFNEPRLLIL 128 (316)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~--------~~f~eP~llVV 128 (316)
..|.+++..|..-++ -++++|.. ....+.+.+||+++|+..++.-.--|.|..... ..+.+.|+||+
T Consensus 201 ~~l~~~~~~L~~Akr--PvIi~G~g~~~~~a~~~l~~lae~l~iPV~tt~~gkg~~~e~hpl~~G~~~~~~l~~aDlvl~ 278 (569)
T PRK09259 201 EAVDRALDLLKKAKR--PLIILGKGAAYAQADEQIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAAARSLALANADVVLL 278 (569)
T ss_pred HHHHHHHHHHHhCCC--CEEEECcCccccChHHHHHHHHHHHCCCEEecccccccCCCCChhhhhHHHHHHHhcCCEEEE
Confidence 345566666554333 35666652 346789999999999988765444466653322 13689999999
Q ss_pred eCCCCC
Q 021180 129 TDPRTD 134 (316)
Q Consensus 129 ~DP~~d 134 (316)
+..+-+
T Consensus 279 lG~~~~ 284 (569)
T PRK09259 279 VGARLN 284 (569)
T ss_pred eCCCCc
Confidence 997654
No 143
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=39.17 E-value=95 Score=27.73 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=12.8
Q ss_pred HHHhhhcCCCEEEEec
Q 021180 138 IKEAALGNIPTIAFCD 153 (316)
Q Consensus 138 I~EAs~lnIPtIAL~D 153 (316)
++++...++|++++|-
T Consensus 64 ~~~~~~~~~pvlGiC~ 79 (196)
T TIGR01855 64 VELVVRLGKPVLGICL 79 (196)
T ss_pred HHHHHhCCCCEEEECH
Confidence 3777778999999983
No 144
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=39.07 E-value=1.2e+02 Score=26.71 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=23.8
Q ss_pred cCCceEEEeCCCCC-chhHHHhhhcCCCEEEEecCCC
Q 021180 121 NEPRLLILTDPRTD-HQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 121 ~eP~llVV~DP~~d-~qaI~EAs~lnIPtIAL~DTds 156 (316)
+.+|.||+.....+ ...++++...|||+|.+ |++.
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~ 89 (266)
T cd06282 54 QRVDGLILTVADAATSPALDLLDAERVPYVLA-YNDP 89 (266)
T ss_pred cCCCEEEEecCCCCchHHHHHHhhCCCCEEEE-eccC
Confidence 46788887643322 34678999999999988 4443
No 145
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=39.07 E-value=1.2e+02 Score=31.71 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCceecCCccCCccCCccc---------------ccccC
Q 021180 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---------------TSFNE 122 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~---------------~~f~e 122 (316)
.+.+++..|.+-++ -++++|.. ......+.+||+++|+..++.-.-.|.|-+-.- ..+.+
T Consensus 185 ~i~~~~~~L~~A~r--P~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt~~gkg~~p~~hp~~~G~~g~~g~~~~~~~l~~ 262 (579)
T TIGR03457 185 SLAQAARLLAEAKF--PVIISGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSFPASHPLWVGPLGYQGSKAAMKLISD 262 (579)
T ss_pred HHHHHHHHHHhCCC--CEEEECcCccccChHHHHHHHHHHhCCCEEEcccccccCCCCCchhccCCcCcchHHHHHHHHh
Confidence 35556666554333 35666663 356788999999999988775333444433211 12578
Q ss_pred CceEEEeCCCCC
Q 021180 123 PRLLILTDPRTD 134 (316)
Q Consensus 123 P~llVV~DP~~d 134 (316)
.|+||++..+-+
T Consensus 263 aDlil~lG~~~~ 274 (579)
T TIGR03457 263 ADVVLALGTRLG 274 (579)
T ss_pred CCEEEEECCCCc
Confidence 999999997755
No 146
>PLN02275 transferase, transferring glycosyl groups
Probab=39.06 E-value=68 Score=31.02 Aligned_cols=73 Identities=7% Similarity=-0.063 Sum_probs=44.4
Q ss_pred CcEEEEccCchhHHHHHHHHHHcCCceecCCccCCcc-CCcccccccCCceEEEeCCCC--C--chhHHHhhhcCCCEEE
Q 021180 76 GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTF-TNQMQTSFNEPRLLILTDPRT--D--HQPIKEAALGNIPTIA 150 (316)
Q Consensus 76 ~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtL-TN~~~~~f~eP~llVV~DP~~--d--~qaI~EAs~lnIPtIA 150 (316)
-+++++|..+.- .-+++.++..|..- -.|.+|.+ .+.....+..-|+.|+..+.. + ...+-||.-+|+|+|+
T Consensus 262 i~l~ivG~G~~~-~~l~~~~~~~~l~~--v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa 338 (371)
T PLN02275 262 LLFIITGKGPQK-AMYEEKISRLNLRH--VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCA 338 (371)
T ss_pred eEEEEEeCCCCH-HHHHHHHHHcCCCc--eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEE
Confidence 356778887654 44566777666432 13455543 222333457778887643221 1 3468999999999999
Q ss_pred E
Q 021180 151 F 151 (316)
Q Consensus 151 L 151 (316)
.
T Consensus 339 ~ 339 (371)
T PLN02275 339 V 339 (371)
T ss_pred e
Confidence 5
No 147
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=38.99 E-value=1.3e+02 Score=32.32 Aligned_cols=99 Identities=11% Similarity=0.006 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCc-eecCCccCCccCCcccccccCCceEEEeCCCCC-
Q 021180 57 KTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAH-AIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD- 134 (316)
Q Consensus 57 kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~-~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d- 134 (316)
|-..++..|+.-+..-...-+++++|..+... -+++.++..|.. .| +|+|. . +.....+..-|++|+..-.+.
T Consensus 411 Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~e-eLk~la~elgL~d~V--~FlG~-~-~Dv~~~LaaADVfVlPS~~EGf 485 (578)
T PRK15490 411 KNPFAWIDFAARYLQHHPATRFVLVGDGDLRA-EAQKRAEQLGILERI--LFVGA-S-RDVGYWLQKMNVFILFSRYEGL 485 (578)
T ss_pred cCHHHHHHHHHHHHhHCCCeEEEEEeCchhHH-HHHHHHHHcCCCCcE--EECCC-h-hhHHHHHHhCCEEEEcccccCc
Confidence 33344445443332222335678888765433 455666666642 11 24432 2 223334677788887653332
Q ss_pred chhHHHhhhcCCCEEEEecCCCCCCcc
Q 021180 135 HQPIKEAALGNIPTIAFCDTDSPMRYV 161 (316)
Q Consensus 135 ~qaI~EAs~lnIPtIAL~DTds~~~~V 161 (316)
...+-||..+|+|+|+- |.....+.|
T Consensus 486 p~vlLEAMA~GlPVVAT-dvGG~~EiV 511 (578)
T PRK15490 486 PNVLIEAQMVGVPVIST-PAGGSAECF 511 (578)
T ss_pred cHHHHHHHHhCCCEEEe-CCCCcHHHc
Confidence 56889999999999964 444444443
No 148
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=38.79 E-value=1.4e+02 Score=26.13 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=26.8
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTD 155 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTd 155 (316)
+.+|-||++....+...++.+...|||+|.+-+..
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~ipvv~~~~~~ 88 (268)
T cd01575 54 RRPAGLILTGLEHTERTRQLLRAAGIPVVEIMDLP 88 (268)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhcCCCEEEEecCC
Confidence 46788888876555567888888999999986543
No 149
>PLN02501 digalactosyldiacylglycerol synthase
Probab=38.59 E-value=99 Score=34.34 Aligned_cols=94 Identities=12% Similarity=-0.003 Sum_probs=57.5
Q ss_pred cCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCC
Q 021180 53 INLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPR 132 (316)
Q Consensus 53 INL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~ 132 (316)
+.-.|=+..|..|+..+..-...-++++||..+... .+++.+...|.. + .|++|. +.....|..-|+.|+....
T Consensus 555 La~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~re-eLe~la~eLgL~-V--~FLG~~--dd~~~lyasaDVFVlPS~s 628 (794)
T PLN02501 555 MVWAKGYRELIDLLAKHKNELDGFNLDVFGNGEDAH-EVQRAAKRLDLN-L--NFLKGR--DHADDSLHGYKVFINPSIS 628 (794)
T ss_pred ccccCCHHHHHHHHHHHHhhCCCeEEEEEcCCccHH-HHHHHHHHcCCE-E--EecCCC--CCHHHHHHhCCEEEECCCc
Confidence 344555666777766554321235678899887644 456666666653 2 466552 2222335666766665543
Q ss_pred CC-chhHHHhhhcCCCEEEEe
Q 021180 133 TD-HQPIKEAALGNIPTIAFC 152 (316)
Q Consensus 133 ~d-~qaI~EAs~lnIPtIAL~ 152 (316)
+. ...+.||.-+|+|||+--
T Consensus 629 EgFGlVlLEAMA~GlPVVATd 649 (794)
T PLN02501 629 DVLCTATAEALAMGKFVVCAD 649 (794)
T ss_pred ccchHHHHHHHHcCCCEEEec
Confidence 33 567899999999999973
No 150
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.38 E-value=2.5e+02 Score=28.31 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=38.0
Q ss_pred cCCceEEEeC-CCCCchhHHHhhhcCCCEEEEecCCCCC-CcceEEecCCCCCchhH-HHHHHHHH
Q 021180 121 NEPRLLILTD-PRTDHQPIKEAALGNIPTIAFCDTDSPM-RYVDIGIPANNKGKHSI-GCLFWLLA 183 (316)
Q Consensus 121 ~eP~llVV~D-P~~d~qaI~EAs~lnIPtIAL~DTds~~-~~VD~pIP~NndS~~SI-~Li~~lLa 183 (316)
..+|+||+.- -..++..+++|...|||+++-++--... ..--+.|-|-| ++.+. .|+..+|.
T Consensus 76 ~~~dlVV~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTn-GKTTT~~ll~~iL~ 140 (458)
T PRK01710 76 DGFDVIFKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSD-GKTTTTTLIYEMLK 140 (458)
T ss_pred ccCCEEEECCCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCC-CHHHHHHHHHHHHH
Confidence 5689888773 1456788999999999999743321111 11247887854 55554 44444443
No 151
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=38.29 E-value=2.6e+02 Score=27.33 Aligned_cols=102 Identities=14% Similarity=0.111 Sum_probs=65.3
Q ss_pred ceeeecCCccccCHHHHHHHHHHHHHHHHHh--hCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCccccc
Q 021180 42 VFKRRNDGIYIINLGKTWEKLQMAARVIVAI--ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTS 119 (316)
Q Consensus 42 Iyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I--~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~ 119 (316)
+.|-- ++.|.+|-..... -+..|..+ .+++.+++..||.+...+...+.+..+...-..-| .|+=-|++...
T Consensus 152 LIGG~-s~~~~~~~~~~~~----l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~-~~~~~nPy~~~ 225 (311)
T PF06258_consen 152 LIGGD-SKHYRWDEEDAER----LLDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIW-DGTGENPYLGF 225 (311)
T ss_pred EECcC-CCCcccCHHHHHH----HHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEe-cCCCCCcHHHH
Confidence 34443 3566666653322 22333333 35578999999988887777777776433222234 66667877666
Q ss_pred ccCCceEEEeCCCCCchhHHHhhhcCCCEEEE
Q 021180 120 FNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 120 f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL 151 (316)
+..=|.||||--. ..=|.||...|-||.-|
T Consensus 226 La~ad~i~VT~DS--vSMvsEA~~tG~pV~v~ 255 (311)
T PF06258_consen 226 LAAADAIVVTEDS--VSMVSEAAATGKPVYVL 255 (311)
T ss_pred HHhCCEEEEcCcc--HHHHHHHHHcCCCEEEe
Confidence 6778899998532 45789999999999665
No 152
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=38.26 E-value=67 Score=25.04 Aligned_cols=41 Identities=12% Similarity=0.357 Sum_probs=32.0
Q ss_pred HHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceec
Q 021180 64 MAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA 104 (316)
Q Consensus 64 ~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~ 104 (316)
++.+.+..++.+..+.++.+.+...+-|..+|+..|..++.
T Consensus 25 ~~kk~l~~l~~G~~l~V~~dd~~~~~di~~~~~~~G~~~~~ 65 (81)
T PRK00299 25 MVRKTVRNMQPGETLLIIADDPATTRDIPSFCRFMDHELLA 65 (81)
T ss_pred HHHHHHHcCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEE
Confidence 34445556656667788999999999999999999998764
No 153
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=38.18 E-value=1.3e+02 Score=28.06 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=25.8
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCC
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTds 156 (316)
+.+|.||+.....+ ...++++...+||+|.+ |+..
T Consensus 53 ~~vDgIIi~~~~~~~~~~~l~~~~~~~iPvV~~-d~~~ 89 (302)
T TIGR02634 53 RGVDVLVIIPQNGQVLSNAVQEAKDEGIKVVAY-DRLI 89 (302)
T ss_pred cCCCEEEEeCCChhHHHHHHHHHHHCCCeEEEe-cCcC
Confidence 45788888754333 56788999999999976 6554
No 154
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=38.16 E-value=1.3e+02 Score=31.16 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcc--C-chhHHHHHHHHHHcCCceecCCccCCccCCccc---------------ccccC
Q 021180 61 KLQMAARVIVAIENPGDIIVQSA--R-PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---------------TSFNE 122 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVst--r-~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~---------------~~f~e 122 (316)
.+..++..|.+-++ -++++|. + ......+.+||+++|+..++.-.-.|.|-...- ..+++
T Consensus 196 ~i~~~a~~L~~Akr--Pvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~ 273 (561)
T PRK06048 196 QIKRAAELIMKAER--PIIYAGGGVISSNASEELVELAETIPAPVTTTLMGIGAIPTEHPLSLGMLGMHGTKYANYAIQE 273 (561)
T ss_pred HHHHHHHHHHhCCC--CEEEECCCcccccHHHHHHHHHHHhCCCEEEccccCccCCCCCccccCCCCCCCCHHHHHHHHh
Confidence 46666666654433 3566654 3 346788999999999988765444455543211 12579
Q ss_pred CceEEEeCCCCC
Q 021180 123 PRLLILTDPRTD 134 (316)
Q Consensus 123 P~llVV~DP~~d 134 (316)
.|+|+++..+-+
T Consensus 274 aD~vl~lG~~~~ 285 (561)
T PRK06048 274 SDLIIAVGARFD 285 (561)
T ss_pred CCEEEEECCCCC
Confidence 999999997654
No 155
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=37.95 E-value=5e+02 Score=27.25 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=68.5
Q ss_pred CCCcEEEEccCch---hHHHHHHHHHHcCC---ceecCCccCCccCCcccccccCCceEEEeCCCCC-----chhHHHhh
Q 021180 74 NPGDIIVQSARPY---GQRAVLKFAKYTHA---HAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD-----HQPIKEAA 142 (316)
Q Consensus 74 n~~~ILfVstr~~---~q~aV~kfA~~tGa---~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d-----~qaI~EAs 142 (316)
+...+.|+|+... ..+.-+|+.+.+.. .|-.+.|..|-+.= +.+-..+|++.+..+ ...++|..
T Consensus 460 ~~~~~~~lG~G~~~~~A~E~aLKl~E~~~i~a~~~~~~Ef~HGP~~~-----i~~~~~vi~l~~~~~~~~~~~~~~~~~~ 534 (604)
T PRK00331 460 DARNALFLGRGVDYPVALEGALKLKEISYIHAEGYAAGELKHGPIAL-----IDEGMPVVAIAPNDELYEKTKSNIQEVK 534 (604)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHHHhhhcccccchhhhccCcHhh-----hcCCceEEEEEcCchHHHHHHHHHHHHH
Confidence 4567889998754 45556676666533 33456777774321 112234555554322 14567877
Q ss_pred hcCCCEEEEecCCC---CCCcceEEecCCCCCchhHH--HHHHHHHHHHHHhhcCC
Q 021180 143 LGNIPTIAFCDTDS---PMRYVDIGIPANNKGKHSIG--CLFWLLARMVLQMRGTI 193 (316)
Q Consensus 143 ~lnIPtIAL~DTds---~~~~VD~pIP~NndS~~SI~--Li~~lLaraVl~~rG~i 193 (316)
..|-.++.|.+.+. .....++.+|..++-...+- +.+++|+..+-..||-.
T Consensus 535 ~~g~~v~~I~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ip~Qlla~~~A~~~G~~ 590 (604)
T PRK00331 535 ARGARVIVIADEGDEVAEEADDVIEVPEVHELLAPLLYVVPLQLLAYHVALARGTD 590 (604)
T ss_pred hCCCEEEEEEcCCccccccCCceEECCCCccchhHHHHHHHHHHHHHHHHHHcCCC
Confidence 78899999987542 11235677786544333332 33578888888888765
No 156
>PRK05858 hypothetical protein; Provisional
Probab=37.78 E-value=1.3e+02 Score=31.02 Aligned_cols=72 Identities=14% Similarity=0.203 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcc--C-chhHHHHHHHHHHcCCceecCCccCCccCCccc--------ccccCCceEEEe
Q 021180 61 KLQMAARVIVAIENPGDIIVQSA--R-PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ--------TSFNEPRLLILT 129 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVst--r-~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~--------~~f~eP~llVV~ 129 (316)
.+.+++..|..- +.-++++|. + ......+.+||+++|...++.---.|.|....- ..+++.|+||++
T Consensus 192 ~i~~~~~~L~~A--krPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~~~~~~~~~l~~aD~vl~v 269 (542)
T PRK05858 192 ALARAAGLLAEA--QRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGMGRGVVPADHPLAFSRARGKALGEADVVLVV 269 (542)
T ss_pred HHHHHHHHHHhC--CCcEEEECCCccccChHHHHHHHHHHhCCCEEEcCCcCCCCCCCCchhhhHHHHHHHHhCCEEEEE
Confidence 355555555433 334677776 2 356789999999999987764333455554321 136899999999
Q ss_pred CCCCC
Q 021180 130 DPRTD 134 (316)
Q Consensus 130 DP~~d 134 (316)
..+.+
T Consensus 270 G~~~~ 274 (542)
T PRK05858 270 GVPMD 274 (542)
T ss_pred CCCCc
Confidence 97654
No 157
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=37.43 E-value=1.2e+02 Score=26.74 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=15.4
Q ss_pred chhHHHhhhcCCCEEEEec
Q 021180 135 HQPIKEAALGNIPTIAFCD 153 (316)
Q Consensus 135 ~qaI~EAs~lnIPtIAL~D 153 (316)
...++++...++|++|+|-
T Consensus 60 ~~~i~~~~~~~~PilGIC~ 78 (188)
T TIGR00888 60 PRADEKIFELGVPVLGICY 78 (188)
T ss_pred hHHHHHHHhCCCCEEEECH
Confidence 3567888888999999983
No 158
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=37.17 E-value=4.3e+02 Score=26.30 Aligned_cols=127 Identities=16% Similarity=0.124 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHH-hhCC--CcEEEEccC--chhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCC
Q 021180 57 KTWEKLQMAARVIVA-IENP--GDIIVQSAR--PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDP 131 (316)
Q Consensus 57 kT~ekL~~Aa~~I~~-I~n~--~~ILfVstr--~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP 131 (316)
++.+....-...|.. +++. ..|+|+++. ......++-+.+......+. --.+.-|.......+.+=.++|++..
T Consensus 18 ~~~~~~~~~~~~l~~~l~~~~~~~I~~~g~GsS~~~~~~~~~~~~~~~~~~~~-~~~~se~~~~~~~~~~~~~lvi~~S~ 96 (340)
T COG2222 18 RLLEANRAVLAELADFLRKRGIDRILFVGCGSSLHAATPAKYLLERELGLLVA-AIPASEFLTNGAKYLGEDSLVIAFSQ 96 (340)
T ss_pred HHHHhhhhHHHHHHHHHHhCCCcEEEEEecCchHHHHHHHHHHHHHhhCceee-eechhHHhccCccccCCCeEEEEEeC
Confidence 333333333334443 3333 478887764 34455555555533222211 11223333333333333346666665
Q ss_pred CCC----chhHHHhhhcCCCEEEEecC-CCCCC-cceEEecCCCCCchhHHHHHHHHHH
Q 021180 132 RTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANNKGKHSIGCLFWLLAR 184 (316)
Q Consensus 132 ~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~NndS~~SI~Li~~lLar 184 (316)
.-+ .-+++.|+..|..||+|++. ||++. ..||.|+---.--.++....++.+.
T Consensus 97 SG~TpE~vaa~~~a~~~ga~~i~lT~~~dSpLa~~ad~~i~~~~~~e~~~a~T~s~~~~ 155 (340)
T COG2222 97 SGNTPESVAAAELAKEGGALTIALTNEEDSPLARAADYVIPYLAGEEASVAATKSFTAS 155 (340)
T ss_pred CCCCHHHHHHHHHhccCCCeEEEEecCCCChhhhcCCeeeeccCCchHHHHHHHHHHHH
Confidence 444 45778888889999999877 55553 4666665433223345444444443
No 159
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=37.08 E-value=1.2e+02 Score=27.21 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=34.5
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHHHH
Q 021180 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLAR 184 (316)
Q Consensus 122 eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lLar 184 (316)
.+|-||+.....+...++++...|||+|.+ |++.+ .+++.. . |...........|.+
T Consensus 55 ~vdgvi~~~~~~~~~~~~~l~~~~iPvv~~-~~~~~--~~~~v~-~--d~~~~g~~a~~~L~~ 111 (269)
T cd06297 55 LTDGLLLASYDLTERLAERRLPTERPVVLV-DAENP--RFDSFY-L--DNRLGGRLAGAYLAD 111 (269)
T ss_pred CCCEEEEecCccChHHHHHHhhcCCCEEEE-ccCCC--CCCEEE-E--CcHHHHHHHHHHHHH
Confidence 467788876555666778888899999988 55432 223222 2 334444555454444
No 160
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=36.83 E-value=1.3e+02 Score=28.29 Aligned_cols=97 Identities=16% Similarity=0.121 Sum_probs=50.9
Q ss_pred HHHHHHHh-hCCCcEEEEccCch--hHHHHHHHHHHcCCceecCCccCCccCCc-c---cccccCCc-eEEEeCCCCCch
Q 021180 65 AARVIVAI-ENPGDIIVQSARPY--GQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-M---QTSFNEPR-LLILTDPRTDHQ 136 (316)
Q Consensus 65 Aa~~I~~I-~n~~~ILfVstr~~--~q~aV~kfA~~tGa~~I~grw~pGtLTN~-~---~~~f~eP~-llVV~DP~~d~q 136 (316)
|..+|..+ +++.++.||++|.+ .+..++.+.+..|..-...-.++|.-+.. + .......+ .|+|=|...|.+
T Consensus 119 a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~~~l~~~~i~i~vGDs~~DI~ 198 (237)
T TIGR01672 119 ARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKTQWIQDKNIRIHYGDSDNDIT 198 (237)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHHHHHHhCCCeEEEeCCHHHHH
Confidence 55667777 56667888888844 34455556666555311111233322211 1 11122333 456668777754
Q ss_pred hHHHhhhcCCCEEEEe-cCCCCCCcceEEecCC
Q 021180 137 PIKEAALGNIPTIAFC-DTDSPMRYVDIGIPAN 168 (316)
Q Consensus 137 aI~EAs~lnIPtIAL~-DTds~~~~VD~pIP~N 168 (316)
-|...||.+|++. ..++.- -|+|-|
T Consensus 199 ---aAk~AGi~~I~V~~g~~s~~----~~~~~~ 224 (237)
T TIGR01672 199 ---AAKEAGARGIRILRASNSTY----KPLPQA 224 (237)
T ss_pred ---HHHHCCCCEEEEEecCCCCC----CCcccc
Confidence 4555688888884 444331 166665
No 161
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=36.67 E-value=1.6e+02 Score=26.95 Aligned_cols=92 Identities=14% Similarity=0.194 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC--ch
Q 021180 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD--HQ 136 (316)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d--~q 136 (316)
++.|.+|++.+..-...-+++++|..+... -+++.++..+... +=+++ |... .....++.-|++|+.. +.+ ..
T Consensus 203 ~~~li~a~~~l~~~~~~~~l~i~G~g~~~~-~~~~~~~~~~~~~-~v~~~-g~~~-~~~~~~~~ad~~v~~s-~~e~~~~ 277 (360)
T cd04951 203 YPNLLKAFAKLLSDYLDIKLLIAGDGPLRA-TLERLIKALGLSN-RVKLL-GLRD-DIAAYYNAADLFVLSS-AWEGFGL 277 (360)
T ss_pred cHHHHHHHHHHHhhCCCeEEEEEcCCCcHH-HHHHHHHhcCCCC-cEEEe-cccc-cHHHHHHhhceEEecc-cccCCCh
Confidence 344444544333221245677788765443 3445555544321 11233 3222 2233356667766543 223 45
Q ss_pred hHHHhhhcCCCEEEEecCCC
Q 021180 137 PIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 137 aI~EAs~lnIPtIAL~DTds 156 (316)
.+-||..+|+|+|+ .|...
T Consensus 278 ~~~Ea~a~G~PvI~-~~~~~ 296 (360)
T cd04951 278 VVAEAMACELPVVA-TDAGG 296 (360)
T ss_pred HHHHHHHcCCCEEE-ecCCC
Confidence 78899999999997 34433
No 162
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=36.29 E-value=1.6e+02 Score=26.01 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=24.7
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (316)
+.+|.||+..+..+...+.++...|||+|.+ |++.
T Consensus 55 ~~vdgiii~~~~~~~~~~~~~~~~~ipvv~~-~~~~ 89 (264)
T cd01574 55 QRVDGVIVNAPLDDADAALAAAPADVPVVFV-DGSP 89 (264)
T ss_pred cCCCEEEEeCCCCChHHHHHHHhcCCCEEEE-eccC
Confidence 3578888876655544567777789999997 5543
No 163
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=36.10 E-value=1.8e+02 Score=26.91 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=43.0
Q ss_pred CCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC-chhHHHhhhcCCCEEE
Q 021180 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD-HQPIKEAALGNIPTIA 150 (316)
Q Consensus 75 ~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d-~qaI~EAs~lnIPtIA 150 (316)
+.+++++|..+... .+++.++..+..-- =+|+| ...+ ....+..-|++|+....+. ...+.||..+|+|+|+
T Consensus 227 ~~~l~i~G~g~~~~-~~~~~~~~~~~~~~-v~~~g-~~~~-~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~ 299 (371)
T cd04962 227 PARLLLVGDGPERS-PAERLARELGLQDD-VLFLG-KQDH-VEELLSIADLFLLPSEKESFGLAALEAMACGVPVVA 299 (371)
T ss_pred CceEEEEcCCcCHH-HHHHHHHHcCCCce-EEEec-Cccc-HHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEE
Confidence 45677888765443 35556666553210 12343 2222 3334566788877753222 4578999999999998
No 164
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=35.99 E-value=1.4e+02 Score=28.06 Aligned_cols=45 Identities=9% Similarity=-0.005 Sum_probs=28.5
Q ss_pred ccCCccCCccc-ccccCCceEEEeCCCC-CchhHHHhhhcCCCEEEE
Q 021180 107 HTPGTFTNQMQ-TSFNEPRLLILTDPRT-DHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 107 w~pGtLTN~~~-~~f~eP~llVV~DP~~-d~qaI~EAs~lnIPtIAL 151 (316)
|++|.++.... .-+..-|++|+..-.+ -...+.||..+|+|+|+-
T Consensus 264 ~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s 310 (388)
T TIGR02149 264 WINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVAS 310 (388)
T ss_pred EecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEe
Confidence 45555544322 2246678777764322 245779999999999984
No 165
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.91 E-value=3.1e+02 Score=24.93 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=24.1
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEE
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL 151 (316)
+..|-||++.+..+...+++..+.++|+|.+
T Consensus 55 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i 85 (269)
T cd06287 55 LDIDGAILVEPMADDPQVARLRQRGIPVVSI 85 (269)
T ss_pred cCcCeEEEecCCCCCHHHHHHHHcCCCEEEe
Confidence 3578888887655556678888889999988
No 166
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=35.40 E-value=78 Score=23.67 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccC
Q 021180 63 QMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFT 113 (316)
Q Consensus 63 ~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLT 113 (316)
.++.+.+..++.+..+.++.+.+...+-|.++++..|...+.-.=-+|.++
T Consensus 14 i~~k~~l~~l~~G~~l~V~~dd~~s~~di~~~~~~~g~~~~~~~~~~~~~~ 64 (69)
T cd03423 14 MMLHKKVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGHELLAQETEDEPYR 64 (69)
T ss_pred HHHHHHHHcCCCCCEEEEEeCCCchHHHHHHHHHHcCCEEEEEEEcCCEEE
Confidence 344455566666666778888888999999999999988764221345443
No 167
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=35.32 E-value=2.2e+02 Score=25.06 Aligned_cols=89 Identities=16% Similarity=0.127 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC-chh
Q 021180 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD-HQP 137 (316)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d-~qa 137 (316)
.+.|..|++.+......-.++++|...... .+.+.++..+..... ++.+ . .......++.-|++|...-... ...
T Consensus 193 ~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~-~~~~~~~~~~~~~~v-~~~g-~-~~~~~~~~~~ad~~i~ps~~e~~~~~ 268 (348)
T cd03820 193 FDLLIEAWAKIAKKHPDWKLRIVGDGPERE-ALEALIKELGLEDRV-ILLG-F-TKNIEEYYAKASIFVLTSRFEGFPMV 268 (348)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEeCCCCHH-HHHHHHHHcCCCCeE-EEcC-C-cchHHHHHHhCCEEEeCccccccCHH
Confidence 344445554444322334566777655433 344444544432111 2332 2 2222333566677666543211 567
Q ss_pred HHHhhhcCCCEEEE
Q 021180 138 IKEAALGNIPTIAF 151 (316)
Q Consensus 138 I~EAs~lnIPtIAL 151 (316)
+.||..+|+|+|+-
T Consensus 269 ~~Ea~a~G~Pvi~~ 282 (348)
T cd03820 269 LLEAMAFGLPVISF 282 (348)
T ss_pred HHHHHHcCCCEEEe
Confidence 89999999999974
No 168
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=35.29 E-value=89 Score=27.81 Aligned_cols=71 Identities=14% Similarity=0.245 Sum_probs=37.0
Q ss_pred EEEEccCch-hHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeC----CCCCc--hhHHHhhhcCCCEEE
Q 021180 78 IIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD----PRTDH--QPIKEAALGNIPTIA 150 (316)
Q Consensus 78 ILfVstr~~-~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D----P~~d~--qaI~EAs~lnIPtIA 150 (316)
||+|.+.-. ...++..+. ..|+....-++-..++. ...-..||.||+.. |..+. ..+.+....++|+.|
T Consensus 2 il~idn~Dsft~nl~~~l~-~~g~~v~v~~~~~~~~~---~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLG 77 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFC-ELGADVLVKRNDALTLA---DIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILG 77 (187)
T ss_pred EEEEECCCccHHHHHHHHH-HCCCcEEEEeCCCCCHH---HHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEE
Confidence 677777543 444554444 45665544444322211 11113588888885 32221 123333456899999
Q ss_pred Ee
Q 021180 151 FC 152 (316)
Q Consensus 151 L~ 152 (316)
+|
T Consensus 78 IC 79 (187)
T PRK08007 78 VC 79 (187)
T ss_pred EC
Confidence 97
No 169
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=35.25 E-value=1.8e+02 Score=30.25 Aligned_cols=73 Identities=11% Similarity=0.185 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhCCCcEEEEcc--C-chhHHHHHHHHHHcCCceecCCccCCccCCcc--------------c-ccccCC
Q 021180 62 LQMAARVIVAIENPGDIIVQSA--R-PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM--------------Q-TSFNEP 123 (316)
Q Consensus 62 L~~Aa~~I~~I~n~~~ILfVst--r-~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~--------------~-~~f~eP 123 (316)
+..++..|.+- ..-++++|. + ......+.+||+++|+..++.----|.|-... . ..+++.
T Consensus 196 i~~~~~~l~~A--~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~a 273 (574)
T PRK06882 196 IKKALKALLVA--KKPVLFVGGGVITAECSEQLTQFAQKLNLPVTSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAMHES 273 (574)
T ss_pred HHHHHHHHHhC--CCCEEEECCCccccchHHHHHHHHHHhCCCEEEcCccCcCCCCCChhhcCCCcccccHHHHHHHHhC
Confidence 44555555443 334677775 2 34678899999999998775422223333221 1 135799
Q ss_pred ceEEEeCCCCCch
Q 021180 124 RLLILTDPRTDHQ 136 (316)
Q Consensus 124 ~llVV~DP~~d~q 136 (316)
|+||++..+-+..
T Consensus 274 Dlvl~lG~~~~~~ 286 (574)
T PRK06882 274 DLILGIGVRFDDR 286 (574)
T ss_pred CEEEEECCCCCcc
Confidence 9999999876544
No 170
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=35.12 E-value=1e+02 Score=22.66 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCce
Q 021180 63 QMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHA 102 (316)
Q Consensus 63 ~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~ 102 (316)
.++.+.+ .+..++.+.++.+.+...+-|..+++..|..+
T Consensus 14 l~~k~al-~~~~g~~l~v~~d~~~s~~~i~~~~~~~G~~~ 52 (67)
T cd03421 14 IKTKKAL-ELEAGGEIEVLVDNEVAKENVSRFAESRGYEV 52 (67)
T ss_pred HHHHHHH-hcCCCCEEEEEEcChhHHHHHHHHHHHcCCEE
Confidence 3444455 55566677788888888889999999988876
No 171
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=35.01 E-value=3e+02 Score=27.60 Aligned_cols=103 Identities=14% Similarity=0.046 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCc--hhHHHHHHHHHHcCCceecCCccCCcc-------------CCcccc-cccCCce
Q 021180 62 LQMAARVIVAIENPGDIIVQSARP--YGQRAVLKFAKYTHAHAIAGRHTPGTF-------------TNQMQT-SFNEPRL 125 (316)
Q Consensus 62 L~~Aa~~I~~I~n~~~ILfVstr~--~~q~aV~kfA~~tGa~~I~grw~pGtL-------------TN~~~~-~f~eP~l 125 (316)
+.++++.|.+- +.-++++|..- ...+.+.+||+++|+..++.-.-.|.+ .+.... .+ ++|+
T Consensus 201 i~~~~~~l~~A--krPvi~~G~g~~~~a~~~l~~lae~~~~PV~tt~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~aDl 277 (432)
T TIGR00173 201 LDELWDRLNQA--KRGVIVAGPLPPAEDAEALAALAEALGWPLLADPLSGLRGGPHLVIDHYDLLLANPELREEL-QPDL 277 (432)
T ss_pred HHHHHHHHhhc--CCcEEEEcCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCcCHHHHHhcCCchhhhC-CCCE
Confidence 44555555433 33467777642 267889999999999776532222222 222211 24 8999
Q ss_pred EEEeCCCCCchhHHHhh-hcCCCEEEEecCCCCC----CcceEEecCC
Q 021180 126 LILTDPRTDHQPIKEAA-LGNIPTIAFCDTDSPM----RYVDIGIPAN 168 (316)
Q Consensus 126 lVV~DP~~d~qaI~EAs-~lnIPtIAL~DTds~~----~~VD~pIP~N 168 (316)
||++..+-+......-. .-+..+|-+ |.|..- ..+|..|-++
T Consensus 278 vl~lG~~~~~~~~~~~~~~~~~~~i~v-d~d~~~~~~~~~~~~~i~~D 324 (432)
T TIGR00173 278 VIRFGGPPVSKRLRQWLARQPAEYWVV-DPDPGWLDPSHHATTRLEAS 324 (432)
T ss_pred EEEeCCCcchhHHHHHHhCCCCcEEEE-CCCCCccCCCCCceEEEEEC
Confidence 99999876544443321 123455544 655321 1357777774
No 172
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=34.72 E-value=1.4e+02 Score=30.19 Aligned_cols=71 Identities=21% Similarity=0.182 Sum_probs=39.9
Q ss_pred CcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC----ch---hHHHhhhcCCCE
Q 021180 76 GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQ---PIKEAALGNIPT 148 (316)
Q Consensus 76 ~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d----~q---aI~EAs~lnIPt 148 (316)
.+|++|... .+.-+.++.+..|+..+.-++. .+ .....-..||.||+.+-..| .. .+++....++|+
T Consensus 193 ~~I~viD~g--~k~ni~~~L~~~G~~v~vvp~~---~~-~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~Pi 266 (382)
T CHL00197 193 LKIIVIDFG--VKYNILRRLKSFGCSITVVPAT---SP-YQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPI 266 (382)
T ss_pred CEEEEEECC--cHHHHHHHHHHCCCeEEEEcCC---CC-HHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCE
Confidence 468888774 3344566666667765433332 11 11122236899999753222 21 344444458999
Q ss_pred EEEe
Q 021180 149 IAFC 152 (316)
Q Consensus 149 IAL~ 152 (316)
+|+|
T Consensus 267 lGIC 270 (382)
T CHL00197 267 FGIC 270 (382)
T ss_pred EEEc
Confidence 9998
No 173
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=34.66 E-value=2.3e+02 Score=26.89 Aligned_cols=85 Identities=9% Similarity=0.028 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHc-CCceecCCccCCccCCcccccccCCceEEEeCCCCCchh
Q 021180 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYT-HAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQP 137 (316)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~t-Ga~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d~qa 137 (316)
...+..|+..+..-...-.+++++..+.....+++..+.. |.. .++..|. ....+..-|++|+.. -. .
T Consensus 204 ~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~----~~~~~~~aDl~v~~s---G~-~ 272 (380)
T PRK00025 204 LPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLE---VTLLDGQ----KREAMAAADAALAAS---GT-V 272 (380)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCC---eEEEccc----HHHHHHhCCEEEECc---cH-H
Confidence 4445555554433211234556654343344455555544 322 1222222 222345667777643 33 4
Q ss_pred HHHhhhcCCCEEEEecC
Q 021180 138 IKEAALGNIPTIAFCDT 154 (316)
Q Consensus 138 I~EAs~lnIPtIAL~DT 154 (316)
..||..+|+|+|.+...
T Consensus 273 ~lEa~a~G~PvI~~~~~ 289 (380)
T PRK00025 273 TLELALLKVPMVVGYKV 289 (380)
T ss_pred HHHHHHhCCCEEEEEcc
Confidence 44999999999988654
No 174
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=34.50 E-value=1.4e+02 Score=29.55 Aligned_cols=102 Identities=11% Similarity=0.101 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcc-cccccCCceEEEeCCC--
Q 021180 56 GKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM-QTSFNEPRLLILTDPR-- 132 (316)
Q Consensus 56 ~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~-~~~f~eP~llVV~DP~-- 132 (316)
.|=++.|..|+..+..-...-++.++|..+.-. -+++.++..|..-.. .|+ |.+++.. ...++.-|++|+..-.
T Consensus 234 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~-~l~~~~~~~~l~~~V-~~~-G~~~~~el~~~l~~aDv~v~pS~~~~ 310 (406)
T PRK15427 234 KKGLHVAIEACRQLKEQGVAFRYRILGIGPWER-RLRTLIEQYQLEDVV-EMP-GFKPSHEVKAMLDDADVFLLPSVTGA 310 (406)
T ss_pred hcCHHHHHHHHHHHHhhCCCEEEEEEECchhHH-HHHHHHHHcCCCCeE-EEe-CCCCHHHHHHHHHhCCEEEECCccCC
Confidence 344455666665554321234567788766543 456666766642111 233 4444332 2335677888775421
Q ss_pred ---CC--chhHHHhhhcCCCEEEEecCCCCCCcc
Q 021180 133 ---TD--HQPIKEAALGNIPTIAFCDTDSPMRYV 161 (316)
Q Consensus 133 ---~d--~qaI~EAs~lnIPtIAL~DTds~~~~V 161 (316)
.+ ...+.||..+|+|+|+- |....++.|
T Consensus 311 ~g~~Eg~p~~llEAma~G~PVI~t-~~~g~~E~v 343 (406)
T PRK15427 311 DGDMEGIPVALMEAMAVGIPVVST-LHSGIPELV 343 (406)
T ss_pred CCCccCccHHHHHHHhCCCCEEEe-CCCCchhhh
Confidence 12 35688999999999985 444444443
No 175
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.50 E-value=93 Score=27.84 Aligned_cols=60 Identities=13% Similarity=0.038 Sum_probs=34.7
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCCCC--cceEEecCCCCCchhHHHHHHHHHH
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPMR--YVDIGIPANNKGKHSIGCLFWLLAR 184 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~~~--~VD~pIP~NndS~~SI~Li~~lLar 184 (316)
+.+|.||+.....+ ...++++...|||+|.+ |++.+.. ...| |-+|| ..+-.+....|.+
T Consensus 59 ~~vDgiii~~~~~~~~~~~i~~~~~~gIpvV~~-d~~~~~~~~~~~~-V~~d~--~~~g~~aa~~l~~ 122 (274)
T cd06311 59 RKIDALVILPFESAPLTQPVAKAKKAGIFVVVV-DRGLSSPGAQDLY-VAGDN--YGMGRVAGEYIAT 122 (274)
T ss_pred cCCCEEEEeCCCchhhHHHHHHHHHCCCeEEEE-cCCCCCCcccceE-EcCCc--HHHHHHHHHHHHH
Confidence 46788888743333 36789999999999986 5543222 2233 43333 3444444444443
No 176
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.25 E-value=17 Score=35.81 Aligned_cols=40 Identities=28% Similarity=0.345 Sum_probs=28.7
Q ss_pred ecCCccCC--ccCCcccccccCCceEEEeCCCCCchhHHHhhhcCC
Q 021180 103 IAGRHTPG--TFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNI 146 (316)
Q Consensus 103 I~grw~pG--tLTN~~~~~f~eP~llVV~DP~~d~qaI~EAs~lnI 146 (316)
=-|||+.| .-|-....+|++|=+-||+||..- .||-+++|
T Consensus 142 gYgCWLSgIDVsTQ~lNQ~fQePfvAvViDP~Rt----lsagkv~i 183 (347)
T KOG1554|consen 142 GYGCWLSGIDVSTQMLNQRFQEPFVAVVIDPTRT----LSAGKVNI 183 (347)
T ss_pred CCCccccCcchhHHHHhhhhcCCeEEEEecCccc----cccCceee
Confidence 34799999 444444557999999999999765 34555554
No 177
>TIGR01441 GPR GPR endopeptidase. This model describes a tetrameric protease that makes the rate-limiting first cut in the small, acid-soluble spore proteins (SASP) of Bacillus subtilis and related species. The enzyme lacks clear homology to other known proteases. It processes its own amino end before becoming active to cleave SASPs.
Probab=34.12 E-value=34 Score=34.47 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=40.9
Q ss_pred cCCceEEEeCCC--------------------------CCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchh
Q 021180 121 NEPRLLILTDPR--------------------------TDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHS 174 (316)
Q Consensus 121 ~eP~llVV~DP~--------------------------~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~S 174 (316)
..||+||++|.. +.+..|.| ..+|||||||- -|..||-+.-+|| .
T Consensus 173 ~kPD~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~-etLGVPVIAIG----VPTVVdA~tI~~D----t 243 (358)
T TIGR01441 173 IKPDFVIAIDALAARKMERVNSTIQISDTGIHPGSGVGNKRKELSK-KTLGVPVIAVG----VPTVVDAVTIASD----T 243 (358)
T ss_pred hCCCEEEEechhhcCchhhccCeEEecCCCcCCCCCcCccccccCH-HHcCCCEEEEc----CCeeechHHHHHH----H
Confidence 689999999932 23567777 45799999983 3557888877776 6
Q ss_pred HHHHHHHHHHHH
Q 021180 175 IGCLFWLLARMV 186 (316)
Q Consensus 175 I~Li~~lLaraV 186 (316)
|.+++.-|.++.
T Consensus 244 id~~l~~~~~~~ 255 (358)
T TIGR01441 244 IDYVLKHFGREV 255 (358)
T ss_pred HHHHHHHHHhhh
Confidence 777776666654
No 178
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=34.08 E-value=4.1e+02 Score=28.76 Aligned_cols=114 Identities=13% Similarity=0.148 Sum_probs=67.8
Q ss_pred hCCCcEEEEccCch---hHHHHHHHHHHcC---CceecCCccCC--ccCCcccccccCCceEEEeCCCC-----CchhHH
Q 021180 73 ENPGDIIVQSARPY---GQRAVLKFAKYTH---AHAIAGRHTPG--TFTNQMQTSFNEPRLLILTDPRT-----DHQPIK 139 (316)
Q Consensus 73 ~n~~~ILfVstr~~---~q~aV~kfA~~tG---a~~I~grw~pG--tLTN~~~~~f~eP~llVV~DP~~-----d~qaI~ 139 (316)
.+..+++|+|.... ..+.-+|+-+-+. ..|-.+-|..| .+++.. . .+|++.+.. ....++
T Consensus 524 ~~~~~~~~lGrG~~y~~A~EgALKlkE~syi~ae~y~~~EfkHGP~alid~~-----~--pVi~l~~~~~~~e~~~~~~~ 596 (670)
T PTZ00394 524 KESSSILVLGRGYDLATAMEAALKVKELSYVHTEGIHSGELKHGPLALIDET-----S--PVLAMCTHDKHFGLSKSAVQ 596 (670)
T ss_pred hCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcCChhhccCCcHHHhcCC-----c--eEEEEEcCCchHHHHHHHHH
Confidence 45678999999754 3333445544432 23445667777 333321 1 233443322 234789
Q ss_pred HhhhcCCCEEEEecCCC-C---CCcceEEecCCCCCchhHHH--HHHHHHHHHHHhhcCC
Q 021180 140 EAALGNIPTIAFCDTDS-P---MRYVDIGIPANNKGKHSIGC--LFWLLARMVLQMRGTI 193 (316)
Q Consensus 140 EAs~lnIPtIAL~DTds-~---~~~VD~pIP~NndS~~SI~L--i~~lLaraVl~~rG~i 193 (316)
|....+=.+|.|++.+. . .....+.||..++-...+-+ .+++|+..+-..||..
T Consensus 597 evk~~g~~vi~I~~~~~~~~~~~~~~~i~vp~~~~~l~pll~~iplQllAy~~A~~rG~d 656 (670)
T PTZ00394 597 QVKARGGAVVVFATEVDAELKAAASEIVLVPKTVDCLQCVVNVIPFQLLAYYMALLRGNN 656 (670)
T ss_pred HHHHcCCeEEEEECCCcchhcccCCcEEECCCCchhHhHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999986432 1 12256788876554444333 3588998888888874
No 179
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=34.08 E-value=1.1e+02 Score=26.78 Aligned_cols=21 Identities=5% Similarity=0.011 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhCCCcEEEEccC
Q 021180 63 QMAARVIVAIENPGDIIVQSAR 84 (316)
Q Consensus 63 ~~Aa~~I~~I~n~~~ILfVstr 84 (316)
+.+++.+.. ...++|.|++..
T Consensus 103 ~~~~~~l~~-~g~~~i~~v~~~ 123 (259)
T cd01542 103 YELGEYLAQ-QGHKNIAYLGVS 123 (259)
T ss_pred HHHHHHHHH-cCCCcEEEEcCC
Confidence 344455544 345789998643
No 180
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=33.93 E-value=91 Score=27.51 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=23.5
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEe
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFC 152 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~ 152 (316)
+.+|.||+.....+...++++...+||+|.+-
T Consensus 54 ~~vdgiii~~~~~~~~~~~~l~~~~ipvV~~~ 85 (268)
T cd06298 54 KQVDGIIFMGGKISEEHREEFKRSPTPVVLAG 85 (268)
T ss_pred hcCCEEEEeCCCCcHHHHHHHhcCCCCEEEEc
Confidence 35677887765545567788888899998883
No 181
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=33.91 E-value=1.4e+02 Score=26.49 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=23.6
Q ss_pred CCceEEEeCCCC--CchhHHHhhhcCCCEEEEecCCC
Q 021180 122 EPRLLILTDPRT--DHQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 122 eP~llVV~DP~~--d~qaI~EAs~lnIPtIAL~DTds 156 (316)
..|.||+.-... ....+.++...+||+|.+ |++.
T Consensus 56 ~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~-~~~~ 91 (272)
T cd06301 56 GVDAIIVVPVDTAATAPIVKAANAAGIPLVYV-NRRP 91 (272)
T ss_pred CCCEEEEecCchhhhHHHHHHHHHCCCeEEEe-cCCC
Confidence 467777764432 346788899999999965 5543
No 182
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=33.75 E-value=1.7e+02 Score=25.92 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=41.4
Q ss_pred EEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeC-C---CCC---chhHHHhhhcCCCEEE
Q 021180 78 IIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-P---RTD---HQPIKEAALGNIPTIA 150 (316)
Q Consensus 78 ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D-P---~~d---~qaI~EAs~lnIPtIA 150 (316)
||+|.+.-....-+..+.+..|.....-++--+.+-. ..-..|+.||+.. | ..+ ...++ ....++|++|
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~---~~~~~~~~iilsgGp~~~~~~~~~~~~i~-~~~~~~PiLG 77 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDG---IEALNPTHLVISPGPCTPNEAGISLQAIE-HFAGKLPILG 77 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHH---HhhCCCCEEEEeCCCCChHHCcchHHHHH-HhcCCCCEEE
Confidence 7888887655555556667778765443443232211 1123588888885 2 111 23343 3567999999
Q ss_pred Ee
Q 021180 151 FC 152 (316)
Q Consensus 151 L~ 152 (316)
+|
T Consensus 78 IC 79 (193)
T PRK08857 78 VC 79 (193)
T ss_pred Ec
Confidence 98
No 183
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.75 E-value=1.7e+02 Score=25.96 Aligned_cols=61 Identities=21% Similarity=0.176 Sum_probs=34.3
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCCC-CcceEEecCCCCCchhHHHHHHHHHHH
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPM-RYVDIGIPANNKGKHSIGCLFWLLARM 185 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~~-~~VD~pIP~NndS~~SI~Li~~lLara 185 (316)
+.+|.||+.....+ ...++++...+||+|.+ |...+. .++.+ |-. |...+-..+..+|.+.
T Consensus 54 ~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~-~~~~~~~~~~~~-v~~--d~~~~g~~~~~~l~~~ 117 (277)
T cd06319 54 KGVSGIIISPTNSSAAVTLLKLAAQAKIPVVIA-DIGAEGGDYVSY-IKS--DNYEGAYDLGKFLAAA 117 (277)
T ss_pred cCCCEEEEcCCchhhhHHHHHHHHHCCCCEEEE-ecCCCCCceEEE-Eee--ccHHHHHHHHHHHHHH
Confidence 45787776543322 35678888999999975 554322 23333 323 3344444555555543
No 184
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=33.65 E-value=1e+02 Score=28.43 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=25.7
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCC
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTds 156 (316)
+.+|-||+.....+ ...++++...|||+|.+ |++.
T Consensus 55 ~~~DgiIi~~~~~~~~~~~~~~~~~~~iPvV~v-~~~~ 91 (298)
T cd06302 55 QGVDAIAVVPNDPDALEPVLKKAREAGIKVVTH-DSDV 91 (298)
T ss_pred cCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEE-cCCC
Confidence 46899998765444 46788999999998876 5543
No 185
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=33.53 E-value=1.7e+02 Score=25.16 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=12.3
Q ss_pred HHHhhhcCCCEEEEec
Q 021180 138 IKEAALGNIPTIAFCD 153 (316)
Q Consensus 138 I~EAs~lnIPtIAL~D 153 (316)
.++....++|++|+|-
T Consensus 63 ~~~~~~~~~PilGIC~ 78 (181)
T cd01742 63 DPEIFELGVPVLGICY 78 (181)
T ss_pred hHHHHhcCCCEEEEcH
Confidence 4666667999999983
No 186
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=33.17 E-value=1.5e+02 Score=26.72 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=23.6
Q ss_pred cCCceEEEeCCC--CCchhHHHhhhcCCCEEEEe
Q 021180 121 NEPRLLILTDPR--TDHQPIKEAALGNIPTIAFC 152 (316)
Q Consensus 121 ~eP~llVV~DP~--~d~qaI~EAs~lnIPtIAL~ 152 (316)
+.+|.||+.... .....++++...|||+|.+-
T Consensus 53 ~~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~ 86 (289)
T cd01540 53 QGAKGFVICVPDVKLGPAIVAKAKAYNMKVVAVD 86 (289)
T ss_pred cCCCEEEEccCchhhhHHHHHHHHhCCCeEEEec
Confidence 457888887543 33456899999999999873
No 187
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=33.10 E-value=1.2e+02 Score=33.30 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=43.6
Q ss_pred CCCcEEEEccC-chhHHHHHHHHHHcCCc--eecCCccCCccCCcccccccCCceEEEeC-CCC-----CchhHHHhhhc
Q 021180 74 NPGDIIVQSAR-PYGQRAVLKFAKYTHAH--AIAGRHTPGTFTNQMQTSFNEPRLLILTD-PRT-----DHQPIKEAALG 144 (316)
Q Consensus 74 n~~~ILfVstr-~~~q~aV~kfA~~tGa~--~I~grw~pGtLTN~~~~~f~eP~llVV~D-P~~-----d~qaI~EAs~l 144 (316)
.+.+||+|.+- .+.+.++..+.+.+|.- .+.-+ ...++.-.......+|.|||.. |.. +...++++...
T Consensus 4 ~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~--~d~~~~~~~~~l~~~D~VVIspGPG~p~~~~~~~i~~~i~~~ 81 (742)
T TIGR01823 4 QRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVH--SDTFQDQLLELLPLFDAIVVGPGPGNPNNAQDMGIISELWEL 81 (742)
T ss_pred CCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEe--CCCCchhhhhhhcCCCEEEECCCCCCccchhhhHHHHHHHHh
Confidence 45678888886 45566666666665532 11111 1111211111245689888873 332 23366777766
Q ss_pred C----CCEEEEec
Q 021180 145 N----IPTIAFCD 153 (316)
Q Consensus 145 n----IPtIAL~D 153 (316)
+ ||+.|||=
T Consensus 82 ~~~~~iPvLGICl 94 (742)
T TIGR01823 82 ANLDEVPVLGICL 94 (742)
T ss_pred cccCCCcEEEEch
Confidence 5 99999984
No 188
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=33.10 E-value=1.8e+02 Score=30.07 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhCCCcEEEEcc--C-chhHHHHHHHHHHcCCceecCCccCCccCCccc---------------ccccCC
Q 021180 62 LQMAARVIVAIENPGDIIVQSA--R-PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---------------TSFNEP 123 (316)
Q Consensus 62 L~~Aa~~I~~I~n~~~ILfVst--r-~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~---------------~~f~eP 123 (316)
+.+++.+|.+-+ .-++++|. + ....+.+.+||+++|+..++.---.|.|-.... ..+.+.
T Consensus 191 i~~~~~~L~~Ak--rPvi~~G~g~~~~~a~~~l~~lae~l~~pv~tt~~~kg~~~e~hp~~~G~~g~~~~~~~~~~l~~a 268 (558)
T TIGR00118 191 IKKAAELINLAK--KPVILVGGGVIIAGASEELKELAERIQIPVTTTLMGLGSFPEDHPLSLGMLGMHGTKTANLAVHEC 268 (558)
T ss_pred HHHHHHHHHhCC--CcEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHHHhC
Confidence 556666655433 33566664 2 346788999999999987765333455553211 124789
Q ss_pred ceEEEeCCCCC
Q 021180 124 RLLILTDPRTD 134 (316)
Q Consensus 124 ~llVV~DP~~d 134 (316)
|+||++..+-+
T Consensus 269 D~vl~lG~~~~ 279 (558)
T TIGR00118 269 DLIIAVGARFD 279 (558)
T ss_pred CEEEEECCCCC
Confidence 99999997654
No 189
>PRK08322 acetolactate synthase; Reviewed
Probab=32.85 E-value=2.4e+02 Score=28.92 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcc---CchhHHHHHHHHHHcCCceecCCccCCccCCcc---------------cccccC
Q 021180 61 KLQMAARVIVAIENPGDIIVQSA---RPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNE 122 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVst---r~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~---------------~~~f~e 122 (316)
.+.+++..|.+- +.-++++|. +....+.+.+||+++|+..++.---.|.|-... ...+.+
T Consensus 185 ~i~~~~~~l~~A--~rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~ 262 (547)
T PRK08322 185 AIERAAEAIQAA--KNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPETHPLSLGTAGLSQGDYVHCAIEH 262 (547)
T ss_pred HHHHHHHHHHhC--CCcEEEECCCcchhcHHHHHHHHHHHhCCCEEEccccCCcCCCCCchhccCCCCCCCHHHHHHHHh
Confidence 455555555433 334666776 235678899999999998775322223333211 123579
Q ss_pred CceEEEeCCCCC
Q 021180 123 PRLLILTDPRTD 134 (316)
Q Consensus 123 P~llVV~DP~~d 134 (316)
.|+||++..+-+
T Consensus 263 aDlil~lG~~l~ 274 (547)
T PRK08322 263 ADLIINVGHDVI 274 (547)
T ss_pred CCEEEEECCCCc
Confidence 999999986654
No 190
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.30 E-value=1e+02 Score=27.37 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=25.9
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTD 155 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTd 155 (316)
+..|.||+..+..+...++++...+||+|.+ |+.
T Consensus 54 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~i-~~~ 87 (270)
T cd06296 54 RRTDGVILVTPELTSAQRAALRRTGIPFVVV-DPA 87 (270)
T ss_pred cCCCEEEEecCCCChHHHHHHhcCCCCEEEE-ecc
Confidence 3568888876655556789999999999987 544
No 191
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=32.25 E-value=1.9e+02 Score=29.07 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCc---hhHHHHHHHHHHcCCc-eecCCccCCccCCcccccccCCceEEEeCCCCC
Q 021180 59 WEKLQMAARVIVAIENPGDIIVQSARP---YGQRAVLKFAKYTHAH-AIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD 134 (316)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~ILfVstr~---~~q~aV~kfA~~tGa~-~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d 134 (316)
++.|.+|++.+..-...-+++++|..+ ...+.++++++..|.. .| +|+| ......-+..-|++|+..- .+
T Consensus 308 ~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V--~f~G---~~~v~~~l~~aDv~vlpS~-~E 381 (475)
T cd03813 308 IKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNV--KFTG---FQNVKEYLPKLDVLVLTSI-SE 381 (475)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeE--EEcC---CccHHHHHHhCCEEEeCch-hh
Confidence 444555555444322335677788653 2234455666666542 11 2454 2222333566777776642 23
Q ss_pred --chhHHHhhhcCCCEEE
Q 021180 135 --HQPIKEAALGNIPTIA 150 (316)
Q Consensus 135 --~qaI~EAs~lnIPtIA 150 (316)
...+-||..+|+|+|+
T Consensus 382 g~p~~vlEAma~G~PVVa 399 (475)
T cd03813 382 GQPLVILEAMAAGIPVVA 399 (475)
T ss_pred cCChHHHHHHHcCCCEEE
Confidence 4578899999999999
No 192
>PRK05637 anthranilate synthase component II; Provisional
Probab=32.19 E-value=1.5e+02 Score=27.15 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=36.9
Q ss_pred CcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeC-CCCCchh-----HHHhhhcCCCEE
Q 021180 76 GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PRTDHQP-----IKEAALGNIPTI 149 (316)
Q Consensus 76 ~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D-P~~d~qa-----I~EAs~lnIPtI 149 (316)
.+|++|........-+...-++.|.+...-++- .+ .....-..||.||+.. |..-... +-+....++|++
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~---~~-~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiL 77 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT---VP-VEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLL 77 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCC---CC-HHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEE
Confidence 357888876554444445555566654332221 11 1111123678888863 3322121 222223379999
Q ss_pred EEe
Q 021180 150 AFC 152 (316)
Q Consensus 150 AL~ 152 (316)
|+|
T Consensus 78 GIC 80 (208)
T PRK05637 78 GIC 80 (208)
T ss_pred EEc
Confidence 997
No 193
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=32.15 E-value=1.9e+02 Score=29.79 Aligned_cols=73 Identities=19% Similarity=0.190 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCceecCCccCCccCCccc---------------ccccC
Q 021180 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---------------TSFNE 122 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~---------------~~f~e 122 (316)
.|.+++..|.+-+ .-++++|.. ....+.+.+||+++|+..++.-.--|.|-.... ..+.+
T Consensus 185 ~l~~~~~~L~~Ak--rPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~ 262 (548)
T PRK08978 185 ELEQARALLAQAK--KPVLYVGGGVGMAGAVPALREFLAATGMPAVATLKGLGAVEADHPYYLGMLGMHGTKAANLAVQE 262 (548)
T ss_pred HHHHHHHHHHcCC--CCEEEECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHHHh
Confidence 4555665555433 346777763 345678899999999987765333344432111 12579
Q ss_pred CceEEEeCCCCCc
Q 021180 123 PRLLILTDPRTDH 135 (316)
Q Consensus 123 P~llVV~DP~~d~ 135 (316)
.|+|+++..+.+.
T Consensus 263 aD~vl~lG~~~~~ 275 (548)
T PRK08978 263 CDLLIAVGARFDD 275 (548)
T ss_pred CCEEEEEcCCCCc
Confidence 9999999976543
No 194
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=32.05 E-value=2e+02 Score=24.99 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=25.4
Q ss_pred cccCCceEEEeCCCCC------------chhHHHhhhcCCCEEEEecC
Q 021180 119 SFNEPRLLILTDPRTD------------HQPIKEAALGNIPTIAFCDT 154 (316)
Q Consensus 119 ~f~eP~llVV~DP~~d------------~qaI~EAs~lnIPtIAL~DT 154 (316)
.+...|.||++.-..+ ...|+++...++|++|+|-.
T Consensus 43 ~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G 90 (188)
T cd01741 43 DLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLG 90 (188)
T ss_pred CcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECcc
Confidence 3566788888863322 23567888889999999854
No 195
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.95 E-value=1.1e+02 Score=26.82 Aligned_cols=45 Identities=18% Similarity=0.126 Sum_probs=28.3
Q ss_pred cCCceEEEeCCCCC-chhHHHhhhcCCCEEEEecCCCCCCcceEEec
Q 021180 121 NEPRLLILTDPRTD-HQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (316)
Q Consensus 121 ~eP~llVV~DP~~d-~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP 166 (316)
+.+|.||+.....+ ...++++...|||+|.+ |++.+...+++.-+
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~v~~ 99 (268)
T cd06289 54 HGVAGIILCPAAGTSPDLLKRLAESGIPVVLV-AREVAGAPFDYVGP 99 (268)
T ss_pred cCCCEEEEeCCCCccHHHHHHHHhcCCCEEEE-eccCCCCCCCEEee
Confidence 34687887754333 34788999999999987 44433233444433
No 196
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=31.72 E-value=3.1e+02 Score=29.09 Aligned_cols=100 Identities=19% Similarity=0.260 Sum_probs=55.7
Q ss_pred ccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEcc-C--chhHHHHHHHHHHcCCceecC----CccC-----------Cc
Q 021180 50 IYIINLGKTWEKLQMAARVIVAIENPGDIIVQSA-R--PYGQRAVLKFAKYTHAHAIAG----RHTP-----------GT 111 (316)
Q Consensus 50 i~IINL~kT~ekL~~Aa~~I~~I~n~~~ILfVst-r--~~~q~aV~kfA~~tGa~~I~g----rw~p-----------Gt 111 (316)
.-=|..+.-+ .+.+.-|..+ .+..++|..+ + +....+..+|+...|...+.. |+.+ |.
T Consensus 78 ~~~ISWDEAl---~~IA~kL~~~-~~~~~~~y~sg~~snE~~~l~q~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~~ 153 (574)
T cd02767 78 YRPISWDEAF---AEIAARLRAL-DPDRAAFYTSGRASNEAAYLYQLFARAYGTNNLPDCSNMCHEPSSVGLKKSIGVGK 153 (574)
T ss_pred EEEecHHHHH---HHHHHHHhhh-CCCcEEEEecCCCccHHHHHHHHHHHHhCCCCcCCCCCCcchHHHhHHHHhcCCCC
Confidence 3335554433 2333334444 2466777544 3 233446778998888754321 1111 12
Q ss_pred cCCcccccccCCceEEEe--CCCCCch----hHHHhhhcCCCEEEEecCC
Q 021180 112 FTNQMQTSFNEPRLLILT--DPRTDHQ----PIKEAALGNIPTIAFCDTD 155 (316)
Q Consensus 112 LTN~~~~~f~eP~llVV~--DP~~d~q----aI~EAs~lnIPtIAL~DTd 155 (316)
.|+.. .-|..-|+||+. ||..+|. .|++|++-|..+|.| |..
T Consensus 154 ~t~~~-~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvI-dP~ 201 (574)
T cd02767 154 GTVSL-EDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVI-NPL 201 (574)
T ss_pred CCCCH-HHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEE-CCC
Confidence 22211 125678999988 6766653 468999999888865 653
No 197
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=31.62 E-value=62 Score=27.84 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=24.0
Q ss_pred cccccCCceEEEeCCCCCchhHHHhhhcCCCEEEE
Q 021180 117 QTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 117 ~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL 151 (316)
...-..||+||...-..+...+..-...+||++.+
T Consensus 64 ~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i 98 (186)
T cd01141 64 LIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYV 98 (186)
T ss_pred HHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEe
Confidence 33347899988754322223666778899999887
No 198
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=31.60 E-value=1.9e+02 Score=29.89 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhCCCcEEEEcc--C-chhHHHHHHHHHHcCCceecCCccCCccCCcc---------------cccccCC
Q 021180 62 LQMAARVIVAIENPGDIIVQSA--R-PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNEP 123 (316)
Q Consensus 62 L~~Aa~~I~~I~n~~~ILfVst--r-~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~---------------~~~f~eP 123 (316)
+..+++.|.+-+ .-++++|. + ......+.+||+++|+..++.---.|.|-+-. ...++++
T Consensus 194 i~~~~~~L~~A~--rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~a 271 (557)
T PRK08199 194 LARLAELLARAE--RPLVILGGSGWTEAAVADLRAFAERWGLPVACAFRRQDLFDNRHPNYAGDLGLGINPALAARIREA 271 (557)
T ss_pred HHHHHHHHHhCC--CCEEEECCCcCchhHHHHHHHHHHHhCCCEEEcCCcCCCCCCCChhhccCCcCcCCHHHHHHHHhC
Confidence 455555555433 34667776 2 34578899999999998776411223332211 1135799
Q ss_pred ceEEEeCCCCC
Q 021180 124 RLLILTDPRTD 134 (316)
Q Consensus 124 ~llVV~DP~~d 134 (316)
|+|+++..+-+
T Consensus 272 Dlvl~lG~~~~ 282 (557)
T PRK08199 272 DLVLAVGTRLG 282 (557)
T ss_pred CEEEEeCCCCc
Confidence 99999997654
No 199
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=31.55 E-value=1.9e+02 Score=30.29 Aligned_cols=72 Identities=17% Similarity=0.251 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCceecCCccCCccCCcc---------------cccccC
Q 021180 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNE 122 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~---------------~~~f~e 122 (316)
.+.+++..|..-++ -++++|.. ......+.+||+++|+..++.-.-.|.|-+-. ...+.+
T Consensus 206 ~v~~a~~~L~~Akr--Pvil~G~g~~~~~a~~~l~~lae~lg~PV~tt~~~kg~~~~~hpl~~G~~G~~~~~~~~~~l~~ 283 (585)
T CHL00099 206 RIEQAAKLILQSSQ--PLLYVGGGAIISDAHQEITELAELYKIPVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSE 283 (585)
T ss_pred HHHHHHHHHHcCCC--cEEEECCCCchhchHHHHHHHHHHHCCCEEEccccCcCCCCCCCcccCCCCCCCCHHHHHHHHh
Confidence 45556655554333 35556663 35688899999999998775433344443211 113578
Q ss_pred CceEEEeCCCCC
Q 021180 123 PRLLILTDPRTD 134 (316)
Q Consensus 123 P~llVV~DP~~d 134 (316)
.|+|+++..+-+
T Consensus 284 aDlvL~lG~~~~ 295 (585)
T CHL00099 284 CDLLIALGARFD 295 (585)
T ss_pred CCEEEEECCCCc
Confidence 999999998754
No 200
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=31.50 E-value=1.7e+02 Score=25.81 Aligned_cols=71 Identities=3% Similarity=0.051 Sum_probs=41.6
Q ss_pred CcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeC-CCC--C----chhHHHhhhcCCCE
Q 021180 76 GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PRT--D----HQPIKEAALGNIPT 148 (316)
Q Consensus 76 ~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D-P~~--d----~qaI~EAs~lnIPt 148 (316)
.+||+|........-+....++.|..+..-++..+.+ ......|.|||+. |.. + ...|++ ...++|+
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~-----~~l~~~d~iIi~gGp~~~~~~~~~~~~i~~-~~~~~Pi 75 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDL-----DEVENFSHILISPGPDVPRAYPQLFAMLER-YHQHKSI 75 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccCh-----hHhccCCEEEECCCCCChHHhhHHHHHHHH-hcCCCCE
Confidence 3688888876555557777777787654444432221 1234568888773 431 1 223443 3458999
Q ss_pred EEEe
Q 021180 149 IAFC 152 (316)
Q Consensus 149 IAL~ 152 (316)
+|+|
T Consensus 76 LGIC 79 (190)
T PRK06895 76 LGVC 79 (190)
T ss_pred EEEc
Confidence 9997
No 201
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=31.45 E-value=2.2e+02 Score=24.98 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=40.6
Q ss_pred CCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC-chhHHHhhhcCCCEEEE
Q 021180 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD-HQPIKEAALGNIPTIAF 151 (316)
Q Consensus 75 ~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d-~qaI~EAs~lnIPtIAL 151 (316)
.-++.++|..+... .+.+..+..+... +-+|+ |...+ ...-++.-|++|....... ...+.||..+|+|+|+-
T Consensus 220 ~~~l~i~G~~~~~~-~~~~~~~~~~~~~-~v~~~-g~~~~-~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~ 293 (353)
T cd03811 220 DARLVILGDGPLRE-ELEALAKELGLAD-RVHFL-GFQSN-PYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVAT 293 (353)
T ss_pred CceEEEEcCCccHH-HHHHHHHhcCCCc-cEEEe-cccCC-HHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEc
Confidence 45677777655433 3345555554321 11233 32333 2233556677666543221 45788999999999984
No 202
>PRK02858 germination protease; Provisional
Probab=31.33 E-value=40 Score=34.12 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=40.4
Q ss_pred cCCceEEEeCCC--------------------------CCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchh
Q 021180 121 NEPRLLILTDPR--------------------------TDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHS 174 (316)
Q Consensus 121 ~eP~llVV~DP~--------------------------~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~S 174 (316)
..||+||++|.. +.+..|.| ..+|||||||- -|..||-+.-.|| +
T Consensus 183 ~KPD~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~-etLGVPVIAIG----VPTVVdA~tI~~D----t 253 (369)
T PRK02858 183 TKPDFVIAIDALAARSIERVNTTIQISDTGIHPGSGVGNKRKELSK-ETLGIPVIAIG----VPTVVDAVTITSD----T 253 (369)
T ss_pred hCCCEEEEechhhcCchhhccCeEEecCCCcCCCCCcCccccccCH-HHcCCCEEEEc----CCeeechHHHHHH----H
Confidence 689999999932 23556776 45799999983 3557887777775 6
Q ss_pred HHHHHHHHHHHH
Q 021180 175 IGCLFWLLARMV 186 (316)
Q Consensus 175 I~Li~~lLaraV 186 (316)
|.+++.-|.++.
T Consensus 254 id~~l~~~~~~~ 265 (369)
T PRK02858 254 IDFILKHFGREM 265 (369)
T ss_pred HHHHHHHHhhhh
Confidence 777776666554
No 203
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.29 E-value=1.4e+02 Score=26.72 Aligned_cols=32 Identities=34% Similarity=0.568 Sum_probs=23.6
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEe
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFC 152 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~ 152 (316)
+..|.||+.....+ ...++++...|||+|.+-
T Consensus 56 ~~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 56 AKPDGIVVTIPDPDALDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred hCCCEEEEeCCChHHhHHHHHHHHHCCCeEEEeC
Confidence 45788888765433 456888888999999873
No 204
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=31.16 E-value=1.3e+02 Score=27.99 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=29.3
Q ss_pred cCCceEEEeCCCC-CchhHHHhhhcCCCEEEEecCCCCCCcceEEec
Q 021180 121 NEPRLLILTDPRT-DHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (316)
Q Consensus 121 ~eP~llVV~DP~~-d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP 166 (316)
+..|-||++.... +...+++....+||+|. +|.+.+-..+++...
T Consensus 115 ~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~-~~~~~~~~~~~~V~~ 160 (327)
T TIGR02417 115 RQVDALIVASCMPPEDAYYQKLQNEGLPVVA-LDRSLDDEHFCSVIS 160 (327)
T ss_pred cCCCEEEEeCCCCCChHHHHHHHhcCCCEEE-EccccCCCCCCEEEe
Confidence 5678888875433 45667888888999985 566543333555544
No 205
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=31.08 E-value=44 Score=30.67 Aligned_cols=125 Identities=23% Similarity=0.281 Sum_probs=67.2
Q ss_pred HHHHHHHHcCceecc----ccCCCCCcccceeeecCC--ccc-cCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHH
Q 021180 17 ADIQMMLAAEVHLGT----KNCDFQMERYVFKRRNDG--IYI-INLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQR 89 (316)
Q Consensus 17 ~~i~~LLaAgvHlG~----~~~n~~M~~YIyg~R~dG--i~I-INL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~ 89 (316)
.+++++|++...+.- .-+ +.+.+++.-++.| .+| +||-+=+..=..+.+||+..-.+.. ++|||.+
T Consensus 14 ~~le~~les~~~~vflL~~~i~--~ik~ivk~lK~~gK~vfiHvDLv~Gl~~~e~~i~fi~~~~~pdG--IISTk~~--- 86 (181)
T COG1954 14 KDLEKALESESQYVFLLTGHIL--NIKEIVKKLKNRGKTVFIHVDLVEGLSNDEVAIEFIKEVIKPDG--IISTKSN--- 86 (181)
T ss_pred HHHHHHhcCCCeEEEEEechhh--hHHHHHHHHHhCCcEEEEEeHHhcccCCchHHHHHHHHhccCCe--eEEccHH---
Confidence 578888888776541 111 2222333222212 222 4555555555678888887633333 4677743
Q ss_pred HHHHHHHHcCCceecCCccCCc--cCCcc-cccccCCceEEEeCCCCCchhHHH-hhhcCCCEEE
Q 021180 90 AVLKFAKYTHAHAIAGRHTPGT--FTNQM-QTSFNEPRLLILTDPRTDHQPIKE-AALGNIPTIA 150 (316)
Q Consensus 90 aV~kfA~~tGa~~I~grw~pGt--LTN~~-~~~f~eP~llVV~DP~~d~qaI~E-As~lnIPtIA 150 (316)
+.+-|+..|...|-.-|+=-+ |-|-+ +..-.+||+|=|+-- -=...|+| ..+.++|+||
T Consensus 87 -~i~~Akk~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvLPG-v~Pkvi~~i~~~t~~piIA 149 (181)
T COG1954 87 -VIKKAKKLGILAIQRLFILDSIALEKGIKQIEKSEPDFIEVLPG-VMPKVIKEITEKTHIPIIA 149 (181)
T ss_pred -HHHHHHHcCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEEcCc-ccHHHHHHHHHhcCCCEEe
Confidence 346677788777665453211 11110 112268999877753 33345555 4567899986
No 206
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=31.05 E-value=91 Score=28.48 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=24.4
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCC
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTds 156 (316)
+.+|.||+.....+ ...++++...|||+|.+ |.+.
T Consensus 54 ~~vdgiii~~~~~~~~~~~l~~l~~~~ipvV~~-~~~~ 90 (288)
T cd01538 54 KGVDVLVIAPVDGEALASAVEKAADAGIPVIAY-DRLI 90 (288)
T ss_pred cCCCEEEEecCChhhHHHHHHHHHHCCCCEEEE-CCCC
Confidence 45788887643322 45778999999999987 4443
No 207
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=31.04 E-value=88 Score=26.99 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=21.4
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCC------CEEEEecC
Q 021180 122 EPRLLILTDPRTDHQPIKEAALGNI------PTIAFCDT 154 (316)
Q Consensus 122 eP~llVV~DP~~d~qaI~EAs~lnI------PtIAL~DT 154 (316)
.|+.|++.+......+++.+...|+ +++++-++
T Consensus 178 ~~~~i~~~~~~~a~~~~~~~~~~g~~i~~~i~i~~~d~~ 216 (264)
T cd01537 178 DPTAIFAANDDMALGALRALREAGLRVPDDISVIGFDGT 216 (264)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHhCCCCCCCeEEEeecCc
Confidence 4888998876555556676666655 55655444
No 208
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=30.91 E-value=2.1e+02 Score=29.82 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCceecCCccCCccCCcc---------------cccccCC
Q 021180 62 LQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNEP 123 (316)
Q Consensus 62 L~~Aa~~I~~I~n~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~---------------~~~f~eP 123 (316)
+.+++..|..- ..-++++|.. ....+.+.+||+++|+..++.----|.|-... ...+++.
T Consensus 205 i~~~~~~L~~A--~rPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~hpl~~G~~G~~~~~~~~~~l~~a 282 (571)
T PRK07710 205 IRKLVQAVSVA--KKPVILAGAGVLHAKASKELTSYAEQQEIPVVHTLLGLGGFPADHPLFLGMAGMHGTYTANMALYEC 282 (571)
T ss_pred HHHHHHHHHhC--CCCEEEECCCcCccchHHHHHHHHHHhCCCEEEcCccCccCCCCCccccCCCCCCCCHHHHHHHHhC
Confidence 45555555433 2346677743 34567889999999998776432223333221 1135799
Q ss_pred ceEEEeCCCCC
Q 021180 124 RLLILTDPRTD 134 (316)
Q Consensus 124 ~llVV~DP~~d 134 (316)
|+|+++..+-+
T Consensus 283 DlvL~lG~~~~ 293 (571)
T PRK07710 283 DLLINIGARFD 293 (571)
T ss_pred CEEEEeCCCCC
Confidence 99999987654
No 209
>PRK09939 putative oxidoreductase; Provisional
Probab=30.73 E-value=2.7e+02 Score=30.76 Aligned_cols=103 Identities=15% Similarity=0.220 Sum_probs=59.3
Q ss_pred cCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCch---hHHHHHHHHHHcCCceecC----Cc----------cC
Q 021180 47 NDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPY---GQRAVLKFAKYTHAHAIAG----RH----------TP 109 (316)
Q Consensus 47 ~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~---~q~aV~kfA~~tGa~~I~g----rw----------~p 109 (316)
.+...=|..+.-+.. .+.-|..+..+..|.|.++... ...+..+|+...|...+.. |. ++
T Consensus 119 ~~~~~~ISWdEAl~~---Ia~~L~~i~~p~~i~~y~sg~~snE~~yl~q~f~r~~Gtnn~~~~s~~C~~~~~~~l~~~~G 195 (759)
T PRK09939 119 SDCYKPLSWQQAFDE---IGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIG 195 (759)
T ss_pred CCcEEEccHHHHHHH---HHHHHHhhcCCCeEEEEeeCCchHHHHHHHHHHHHHhCCcccCCCCCCCchHHHHHHHHhcC
Confidence 334555666655443 3444555545777877655332 3356788888877654421 11 11
Q ss_pred -CccCCcccccccCCceEEEe--CCCCCch----hHHHhhhcCCCEEEEecC
Q 021180 110 -GTFTNQMQTSFNEPRLLILT--DPRTDHQ----PIKEAALGNIPTIAFCDT 154 (316)
Q Consensus 110 -GtLTN~~~~~f~eP~llVV~--DP~~d~q----aI~EAs~lnIPtIAL~DT 154 (316)
|..|+... -|..-|+||++ ||..+|. .|++|.+-|..+|.| |.
T Consensus 196 ~g~~t~~l~-Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvI-DP 245 (759)
T PRK09939 196 VGKGTVLLE-DFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAI-NP 245 (759)
T ss_pred CCCCCCCHH-HHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEE-CC
Confidence 33343221 25678999998 5655553 356888888887776 54
No 210
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=30.72 E-value=2.5e+02 Score=27.08 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=38.5
Q ss_pred CCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC--chhHHHhhhcCCCEEEE
Q 021180 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD--HQPIKEAALGNIPTIAF 151 (316)
Q Consensus 75 ~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL 151 (316)
.-++++||..+. +.+++.....|.. |+ |...+ ....+..-|++|+.....+ ...+-||..+|+|+|+-
T Consensus 259 ~~~l~ivG~g~~--~~~~~l~~~~~V~-----~~-G~v~~-~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t 328 (397)
T TIGR03087 259 AAEFYIVGAKPS--PAVRALAALPGVT-----VT-GSVAD-VRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVAS 328 (397)
T ss_pred CcEEEEECCCCh--HHHHHhccCCCeE-----Ee-eecCC-HHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEec
Confidence 356788887764 2344443333322 33 33332 3333556677766532112 34689999999999994
No 211
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=30.66 E-value=1.3e+02 Score=26.00 Aligned_cols=73 Identities=15% Similarity=0.157 Sum_probs=40.8
Q ss_pred CCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCCch-hHHHhhhc-CCCEEE
Q 021180 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQ-PIKEAALG-NIPTIA 150 (316)
Q Consensus 75 ~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d~q-aI~EAs~l-nIPtIA 150 (316)
...+++|++.|-..+-+....+..+-..|-. -++........=-.||++|.+|+..... .+++.... .||.+.
T Consensus 24 ~~~~~IvgaGPSL~~~i~~lk~~~~~~~iia---~~sa~~~L~~~gI~Pd~~v~~D~~~~~~~~~~~~~~~~~i~l~~ 98 (170)
T PF01973_consen 24 GKPAIIVGAGPSLDKNIELLKENRNKAIIIA---VNSALKALLKNGIKPDFVVSIDPQFWNYEHFKEINKEFDIPLFF 98 (170)
T ss_pred CCeEEEEecCCCHHHHHHHHHhcccCcEEEE---ecHHHHHHHHcCceEEEEEEcCCCcchHHHHhhcccccceEEEE
Confidence 4789999999988777655544333322211 1111111122225899999999844432 35565554 555544
No 212
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=30.61 E-value=1.7e+02 Score=26.19 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=9.9
Q ss_pred HHhhhcCCCEEEEe
Q 021180 139 KEAALGNIPTIAFC 152 (316)
Q Consensus 139 ~EAs~lnIPtIAL~ 152 (316)
......++|++++|
T Consensus 64 ~~i~~~~~PilGIC 77 (196)
T PRK13170 64 DLIKACTQPVLGIC 77 (196)
T ss_pred HHHHHcCCCEEEEC
Confidence 33444589999997
No 213
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=30.49 E-value=1.8e+02 Score=27.08 Aligned_cols=44 Identities=14% Similarity=0.050 Sum_probs=29.8
Q ss_pred cCCceEEEeCCCC-CchhHHHhhhcCCCEEEEecCCCCCCcceEEe
Q 021180 121 NEPRLLILTDPRT-DHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (316)
Q Consensus 121 ~eP~llVV~DP~~-d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (316)
+..|.||+..... ....++++...+||+|.+ |...+...+++..
T Consensus 119 ~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~ 163 (342)
T PRK10014 119 QGVDGVVIAGAAGSSDDLREMAEEKGIPVVFA-SRASYLDDVDTVR 163 (342)
T ss_pred CCCCEEEEeCCCCCcHHHHHHHhhcCCCEEEE-ecCCCCCCCCEEE
Confidence 4689998876443 346678888899999966 6544444455543
No 214
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=30.48 E-value=36 Score=25.85 Aligned_cols=19 Identities=32% Similarity=0.630 Sum_probs=16.1
Q ss_pred hhHHHhhhcCCCEEEEecC
Q 021180 136 QPIKEAALGNIPTIAFCDT 154 (316)
Q Consensus 136 qaI~EAs~lnIPtIAL~DT 154 (316)
.=|.|+.-.|.||+|||--
T Consensus 15 ~kI~esav~G~pVvALCGk 33 (58)
T PF11238_consen 15 DKIAESAVMGTPVVALCGK 33 (58)
T ss_pred hHHHHHHhcCceeEeeeCc
Confidence 4588999999999999843
No 215
>PRK08266 hypothetical protein; Provisional
Probab=30.35 E-value=2.1e+02 Score=29.49 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCc-hhHHHHHHHHHHcCCceecCCccCCccCCccc---------ccccCCceEEEeCC
Q 021180 62 LQMAARVIVAIENPGDIIVQSARP-YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---------TSFNEPRLLILTDP 131 (316)
Q Consensus 62 L~~Aa~~I~~I~n~~~ILfVstr~-~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~---------~~f~eP~llVV~DP 131 (316)
+..++..|.+- +.-++++|... ...+.+.+||+++|+..++.---.|.|-.-.. ..+.+.|+||++..
T Consensus 195 i~~~~~~L~~A--krPvIv~G~g~~~a~~~l~~lae~~g~pv~tt~~~kg~~~~~hp~~~g~~~~~~~~~~aDlvl~lG~ 272 (542)
T PRK08266 195 IAAAAALIAAA--KNPMIFVGGGAAGAGEEIRELAEMLQAPVVAFRSGRGIVSDRHPLGLNFAAAYELWPQTDVVIGIGS 272 (542)
T ss_pred HHHHHHHHHhC--CCCEEEECCChhhHHHHHHHHHHHHCCCEEEeccccccCCCCCccccCCHHHHHHHHhCCEEEEeCC
Confidence 44455444432 33466777653 45788899999999987764322355543211 13578999999998
Q ss_pred CCCch
Q 021180 132 RTDHQ 136 (316)
Q Consensus 132 ~~d~q 136 (316)
+.+..
T Consensus 273 ~~~~~ 277 (542)
T PRK08266 273 RLELP 277 (542)
T ss_pred CcCcc
Confidence 76544
No 216
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=30.34 E-value=1.9e+02 Score=30.50 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCceecCCccCCccCCcc---------------cccccC
Q 021180 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNE 122 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~---------------~~~f~e 122 (316)
.+.+++..|..-++ -++++|.. ......+.+||+++|+..++.-.-.|.|-+-. ...+.+
T Consensus 220 ~i~~~~~~L~~Akr--PlIl~G~g~~~~~a~~~l~~lae~l~~PV~tt~~~kg~~p~~hpl~~G~~G~~~~~~~~~~l~~ 297 (612)
T PRK07789 220 QIREAAKLIAAARR--PVLYVGGGVIRAEASAELRELAELTGIPVVTTLMARGAFPDSHPQHLGMPGMHGTVAAVAALQR 297 (612)
T ss_pred HHHHHHHHHHhCCC--CEEEECCCccccCHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCcccCcHHHHHHHHh
Confidence 35555555544333 35566653 35678899999999998776422334333211 113578
Q ss_pred CceEEEeCCCCCc
Q 021180 123 PRLLILTDPRTDH 135 (316)
Q Consensus 123 P~llVV~DP~~d~ 135 (316)
.|+||++..+-+.
T Consensus 298 aDlvL~lG~~l~~ 310 (612)
T PRK07789 298 SDLLIALGARFDD 310 (612)
T ss_pred CCEEEEECCCCCc
Confidence 9999999977653
No 217
>PRK13818 ribosome-binding factor A; Provisional
Probab=30.29 E-value=78 Score=26.84 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=39.9
Q ss_pred CCEEEEecCCCCCCc--ceEEecCCCCCchhHHHHHHHHHHHHHHhhcCCCCCCCccceeecccccCcc
Q 021180 146 IPTIAFCDTDSPMRY--VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPE 212 (316)
Q Consensus 146 IPtIAL~DTds~~~~--VD~pIP~NndS~~SI~Li~~lLaraVl~~rG~i~~~~~w~v~~dl~fyrdpe 212 (316)
..+|.=|+-..|+++ |-|-+-+. ......-+...|-++--..|..+.+.--|..+|.|-|+-|..
T Consensus 31 ~vtVt~V~lS~Dl~~AkVyvs~~~~--~~~~~~~~~~~L~~a~g~iR~~la~~l~lR~~P~L~F~~D~s 97 (121)
T PRK13818 31 DVTITAVECTNDLSYATVYYSLLTE--DEAKEKEVQEGLEKAKGMMRHLLGQTLTVYKVPELIFKRDNS 97 (121)
T ss_pred ceEEeEEEECCCCCEEEEEEEeCCC--chhHHHHHHHHHHHhHHHHHHHHHhhCCCeECCEEEEEeCCC
Confidence 346666666777776 43444441 222222223345556666666676667799999999999876
No 218
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=30.28 E-value=1.5e+02 Score=25.97 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=29.1
Q ss_pred ccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCC
Q 021180 116 MQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 116 ~~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (316)
....-..|||||..+-......+.+-...+||++.+-..+.
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~ 94 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSP 94 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTC
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccc
Confidence 33334689999999877567778888888999998855543
No 219
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=29.90 E-value=98 Score=28.01 Aligned_cols=92 Identities=9% Similarity=-0.018 Sum_probs=54.6
Q ss_pred HHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCc-eecCC--ccC-CccCCcccccccCCceEEEeCCCCCchhHHH
Q 021180 65 AARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAH-AIAGR--HTP-GTFTNQMQTSFNEPRLLILTDPRTDHQPIKE 140 (316)
Q Consensus 65 Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~-~I~gr--w~p-GtLTN~~~~~f~eP~llVV~DP~~d~qaI~E 140 (316)
+..+|..+++.+++.+||+.. +..+..+++..|.. ++..+ ..+ |.+|-... ..+......+++
T Consensus 73 a~ell~~lk~~~~~~IVS~~~--~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~-----------~~~~~K~~~l~~ 139 (203)
T TIGR02137 73 AVEFVDWLRERFQVVILSDTF--YEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQL-----------RQKDPKRQSVIA 139 (203)
T ss_pred HHHHHHHHHhCCeEEEEeCCh--HHHHHHHHHHcCCchhhceeeEEecCCeeECeee-----------cCcchHHHHHHH
Confidence 456677774446888888874 34667778888864 22222 112 44443211 122223345666
Q ss_pred hhhcCCCEEEEecCCCCCCc---ceEEecCCC
Q 021180 141 AALGNIPTIAFCDTDSPMRY---VDIGIPANN 169 (316)
Q Consensus 141 As~lnIPtIAL~DTds~~~~---VD~pIP~Nn 169 (316)
....+..++++-|+.+|+.. ++++|-.|-
T Consensus 140 l~~~~~~~v~vGDs~nDl~ml~~Ag~~ia~~a 171 (203)
T TIGR02137 140 FKSLYYRVIAAGDSYNDTTMLSEAHAGILFHA 171 (203)
T ss_pred HHhhCCCEEEEeCCHHHHHHHHhCCCCEEecC
Confidence 66777889999999887653 666666654
No 220
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.87 E-value=2.1e+02 Score=29.90 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCceecCCccCCccCC--------------ccc-ccccC
Q 021180 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTN--------------QMQ-TSFNE 122 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~grw~pGtLTN--------------~~~-~~f~e 122 (316)
.+.+++..|.+-++ -++++|.. ......+.+||+.+|+..++.---.|.|-. ... ..+.+
T Consensus 210 ~i~~~~~~L~~Akr--Pvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~a~~~~~~ 287 (587)
T PRK06965 210 QIRKAVSLLLSAKR--PYIYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQH 287 (587)
T ss_pred HHHHHHHHHHhcCC--CEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCChhhcCCCCCCCCHHHHHHHHh
Confidence 45666666655433 46667652 356788999999999977653222233332 111 13578
Q ss_pred CceEEEeCCCCCc
Q 021180 123 PRLLILTDPRTDH 135 (316)
Q Consensus 123 P~llVV~DP~~d~ 135 (316)
.|+||++..+-+.
T Consensus 288 aDlvl~lG~~~~~ 300 (587)
T PRK06965 288 CDVLIAIGARFDD 300 (587)
T ss_pred CCEEEEECCCCcc
Confidence 9999999977543
No 221
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=29.76 E-value=3.2e+02 Score=25.55 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=25.4
Q ss_pred ccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCC
Q 021180 120 FNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 120 f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (316)
++.-+++|-.|. -+++=|.-+|+|||+|.-..+
T Consensus 252 i~~a~l~I~~DS----gp~HlAaa~g~P~i~lfg~t~ 284 (319)
T TIGR02193 252 LAGADAVVGVDT----GLTHLAAALDKPTVTLYGATD 284 (319)
T ss_pred HHcCCEEEeCCC----hHHHHHHHcCCCEEEEECCCC
Confidence 466788886665 577888999999999986543
No 222
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.66 E-value=2.1e+02 Score=29.73 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEcc--C-chhHHHHHHHHHHcCCceecCCccCCccCCcc---------------ccccc
Q 021180 60 EKLQMAARVIVAIENPGDIIVQSA--R-PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFN 121 (316)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~ILfVst--r-~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~---------------~~~f~ 121 (316)
..+..++..|..-+++ ++++|. + ....+.+.+||+++|+..++.----|.|..-. ...+.
T Consensus 191 ~~i~~~~~~L~~A~rP--viv~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~ 268 (563)
T PRK08527 191 RQIKKAAEAIKEAKKP--LFYLGGGAILSNASEEIRELVKKTGIPAVETLMARGVLRSDDPLLLGMLGMHGSYAANMAMS 268 (563)
T ss_pred HHHHHHHHHHHcCCCC--EEEECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCChhhcCCCcccCCHHHHHHHH
Confidence 3455666666544333 555555 2 34678999999999997765432334444221 11357
Q ss_pred CCceEEEeCCCCC
Q 021180 122 EPRLLILTDPRTD 134 (316)
Q Consensus 122 eP~llVV~DP~~d 134 (316)
+.|+||++..+-+
T Consensus 269 ~aD~vl~lG~~l~ 281 (563)
T PRK08527 269 ECDLLISLGARFD 281 (563)
T ss_pred hCCEEEEeCCCCC
Confidence 8999999997654
No 223
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=29.40 E-value=1.3e+02 Score=26.91 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=45.0
Q ss_pred HHHHHHhhCC-CcEEEEccCch-hHHHHHHHHHHcCCceecCCccCCccCCcccc--cccCCceEEEeCCCCCchhHHHh
Q 021180 66 ARVIVAIENP-GDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT--SFNEPRLLILTDPRTDHQPIKEA 141 (316)
Q Consensus 66 a~~I~~I~n~-~~ILfVstr~~-~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~--~f~eP~llVV~DP~~d~qaI~EA 141 (316)
+.++..+.+. -.|+|++.... .+..+.++.+......++ +.|. ||-.+. -++.-+++|-.|. -+++=|
T Consensus 127 ~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~l~e~~ali~~a~~~I~~Dt----g~~HlA 198 (247)
T PF01075_consen 127 AELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVIN---LAGK-TSLRELAALISRADLVIGNDT----GPMHLA 198 (247)
T ss_dssp HHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEE---ETTT-S-HHHHHHHHHTSSEEEEESS----HHHHHH
T ss_pred HHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEe---ecCC-CCHHHHHHHHhcCCEEEecCC----hHHHHH
Confidence 4455566333 47888888776 455555555554322111 2222 232221 2578899998886 577888
Q ss_pred hhcCCCEEEEecC
Q 021180 142 ALGNIPTIAFCDT 154 (316)
Q Consensus 142 s~lnIPtIAL~DT 154 (316)
.-+|+|+|+|--.
T Consensus 199 ~a~~~p~v~lfg~ 211 (247)
T PF01075_consen 199 AALGTPTVALFGP 211 (247)
T ss_dssp HHTT--EEEEESS
T ss_pred HHHhCCEEEEecC
Confidence 9999999999743
No 224
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.32 E-value=2.7e+02 Score=29.37 Aligned_cols=72 Identities=10% Similarity=0.161 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC--c---hhHHHHHHHHHHcCCceecCCccCCccCCccc---------------ccc
Q 021180 61 KLQMAARVIVAIENPGDIIVQSAR--P---YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---------------TSF 120 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVstr--~---~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~---------------~~f 120 (316)
.|.+++.+|..-++ -++++|.. . .....+.+||+++|+..++.---.|.|-+-.. ..+
T Consensus 201 ~l~~a~~~L~~A~r--Pvil~G~g~~~~~~~a~~~l~~lae~lg~pv~tt~~gkg~~p~~hpl~~G~~G~~~~~~~~~~l 278 (595)
T PRK09107 201 AITEAVELLANAKR--PVIYSGGGVINSGPEASRLLRELVELTGFPITSTLMGLGAYPASGKNWLGMLGMHGTYEANMAM 278 (595)
T ss_pred HHHHHHHHHHhCCC--cEEEECCcccccchhHHHHHHHHHHHHCCCEEECccccccCCCCCCcccCCCCCCccHHHHHHH
Confidence 46666666655433 36666663 2 25688999999999987654333344443211 125
Q ss_pred cCCceEEEeCCCCC
Q 021180 121 NEPRLLILTDPRTD 134 (316)
Q Consensus 121 ~eP~llVV~DP~~d 134 (316)
.+.|+||++..+-+
T Consensus 279 ~~aDlvL~lG~~~~ 292 (595)
T PRK09107 279 HDCDVMLCVGARFD 292 (595)
T ss_pred HhCCEEEEECCCCC
Confidence 78999999997654
No 225
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=29.21 E-value=3.1e+02 Score=23.98 Aligned_cols=59 Identities=7% Similarity=0.014 Sum_probs=33.8
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCC---CEEEEecCCCC-------CCcceEEecCCCCCchhHHHHHH
Q 021180 122 EPRLLILTDPRTDHQPIKEAALGNI---PTIAFCDTDSP-------MRYVDIGIPANNKGKHSIGCLFW 180 (316)
Q Consensus 122 eP~llVV~DP~~d~qaI~EAs~lnI---PtIAL~DTds~-------~~~VD~pIP~NndS~~SI~Li~~ 180 (316)
.|+.|++.+-..-..+++.+...|+ .+|++-|+... +....+..+.+.-+..++.+++.
T Consensus 181 ~~~ai~~~~d~~a~~~~~~l~~~g~~di~iig~d~~~~~~~~~~~~~~ltti~~~~~~~g~~a~~~l~~ 249 (268)
T cd06323 181 DIKGVFAQNDEMALGAIEALKAAGKDDVKVVGFDGTPDALKAIKAGKMAATVAQQPALMGRLAVETADK 249 (268)
T ss_pred CcCEEEEcCCchHHHHHHHHHHcCCCCcEEEEeCCCHHHHHHHHcCCeeEEEecChHHHHHHHHHHHHH
Confidence 5788877765444446666666655 88887665431 22344555555555555554443
No 226
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=29.19 E-value=2.1e+02 Score=25.15 Aligned_cols=74 Identities=11% Similarity=0.113 Sum_probs=38.6
Q ss_pred CCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCC-cccccccCCceEEEeCCC-CCchhHHHhhhcCCCEEEE
Q 021180 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTN-QMQTSFNEPRLLILTDPR-TDHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 75 ~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN-~~~~~f~eP~llVV~DP~-~d~qaI~EAs~lnIPtIAL 151 (316)
.-.++++|..... ..+.+.++..+...- =+| -|.++. ....-+..-|++|..... .-...+.||..+|+|+|+-
T Consensus 230 ~~~l~i~G~~~~~-~~~~~~~~~~~~~~~-v~~-~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~ 305 (374)
T cd03801 230 DVRLVIVGDGPLR-EELEALAAELGLGDR-VTF-LGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVAS 305 (374)
T ss_pred CeEEEEEeCcHHH-HHHHHHHHHhCCCcc-eEE-EeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEe
Confidence 3456677754443 333444434332210 012 233332 122234566776665433 2255789999999999974
No 227
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=29.04 E-value=1.7e+02 Score=27.00 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=24.0
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTD 155 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTd 155 (316)
+..|-||++....+...+.+....+||+|.+ |..
T Consensus 114 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~ 147 (329)
T TIGR01481 114 KQVDGIIFMGGTITEKLREEFSRSPVPVVLA-GTV 147 (329)
T ss_pred CCCCEEEEeCCCCChHHHHHHHhcCCCEEEE-ecC
Confidence 5689898876554545556677789999966 443
No 228
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=28.99 E-value=1.8e+02 Score=25.97 Aligned_cols=57 Identities=12% Similarity=-0.007 Sum_probs=32.2
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCC-CCcceEEecCCCCCchhHHHHHHHH
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSP-MRYVDIGIPANNKGKHSIGCLFWLL 182 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~-~~~VD~pIP~NndS~~SI~Li~~lL 182 (316)
+.+|.||+.....+ ...++++.. +||+|.+ |.+.+ ...+.+.. . |...+...+...|
T Consensus 54 ~~vDgiIi~~~~~~~~~~~l~~~~~-~ipvV~~-~~~~~~~~~~~~V~-~--D~~~~g~~a~~~l 113 (271)
T cd06314 54 EGVDGIAISPIDPKAVIPALNKAAA-GIKLITT-DSDAPDSGRYVYIG-T--DNYAAGRTAGEIM 113 (271)
T ss_pred cCCCEEEEecCChhHhHHHHHHHhc-CCCEEEe-cCCCCccceeEEEc-c--ChHHHHHHHHHHH
Confidence 45788887643322 467888888 9999987 44432 22334432 2 3344544444433
No 229
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=28.63 E-value=64 Score=26.74 Aligned_cols=95 Identities=9% Similarity=0.063 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC
Q 021180 56 GKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD 134 (316)
Q Consensus 56 ~kT~ekL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d 134 (316)
.|=...|..|+..+.. ....-.++++|...+.. .+...++..+..- .-+|++..-.+....-++.-+++|.+.....
T Consensus 27 ~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~-~~~~~~~~~~~~~-~i~~~~~~~~~~l~~~~~~~di~v~~s~~e~ 104 (172)
T PF00534_consen 27 EKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKK-ELKNLIEKLNLKE-NIIFLGYVPDDELDELYKSSDIFVSPSRNEG 104 (172)
T ss_dssp GGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHH-HHHHHHHHTTCGT-TEEEEESHSHHHHHHHHHHTSEEEE-BSSBS
T ss_pred ccCHHHHHHHHHHHHhhcCCCeEEEEEccccccc-ccccccccccccc-cccccccccccccccccccceeccccccccc
Confidence 3444455555555443 33444667777444433 3445555544321 1124433332333344566788777754422
Q ss_pred -chhHHHhhhcCCCEEEEe
Q 021180 135 -HQPIKEAALGNIPTIAFC 152 (316)
Q Consensus 135 -~qaI~EAs~lnIPtIAL~ 152 (316)
...+.||...|+|+|+--
T Consensus 105 ~~~~~~Ea~~~g~pvI~~~ 123 (172)
T PF00534_consen 105 FGLSLLEAMACGCPVIASD 123 (172)
T ss_dssp S-HHHHHHHHTT-EEEEES
T ss_pred cccccccccccccceeecc
Confidence 568899999999999754
No 230
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=28.62 E-value=3.7e+02 Score=24.23 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=20.1
Q ss_pred ccCCceEEEeCCC-CCchhHHHhhhcCCCEEE
Q 021180 120 FNEPRLLILTDPR-TDHQPIKEAALGNIPTIA 150 (316)
Q Consensus 120 f~eP~llVV~DP~-~d~qaI~EAs~lnIPtIA 150 (316)
+..-|+++...-. .-...+.||...|+|+|+
T Consensus 270 ~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~ 301 (365)
T cd03809 270 YRGARAFVFPSLYEGFGLPVLEAMACGTPVIA 301 (365)
T ss_pred HhhhhhhcccchhccCCCCHHHHhcCCCcEEe
Confidence 3455655543211 114568999999999998
No 231
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=28.61 E-value=50 Score=33.19 Aligned_cols=38 Identities=29% Similarity=0.287 Sum_probs=28.5
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNK 170 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nnd 170 (316)
.-||||+++|..+-.-.-+|..+-|-- .+-++|||+|.
T Consensus 294 ~~PDLI~lld~~Tg~piTTe~lkyG~r------------V~V~aIP~~~~ 331 (357)
T COG3535 294 TTPDLIVLLDLNTGLPITTESLKYGQR------------VVVIAIPAPDL 331 (357)
T ss_pred ecCceEEEEecCCCCccchHHhhcCcE------------EEEEEecCcch
Confidence 589999999988765555666666643 46689999973
No 232
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=28.56 E-value=1.9e+02 Score=25.93 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=16.3
Q ss_pred chhHHHhhhcCCCEEEEecC
Q 021180 135 HQPIKEAALGNIPTIAFCDT 154 (316)
Q Consensus 135 ~qaI~EAs~lnIPtIAL~DT 154 (316)
.+.|+++...++|+.|+|-.
T Consensus 61 ~~~i~~~~~~~~PilgIC~G 80 (200)
T PRK13143 61 RDVILEAARSGKPFLGICLG 80 (200)
T ss_pred HHHHHHHHHcCCCEEEECHH
Confidence 45678888889999999854
No 233
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.53 E-value=1.9e+02 Score=26.74 Aligned_cols=81 Identities=22% Similarity=0.169 Sum_probs=52.3
Q ss_pred HHHHHHHHh-hCCCcEEEE-ccCchhHHHHHHHHHHcCCceecCCcc-CCccCCccccc-ccCCceEEEeCCCCCchhHH
Q 021180 64 MAARVIVAI-ENPGDIIVQ-SARPYGQRAVLKFAKYTHAHAIAGRHT-PGTFTNQMQTS-FNEPRLLILTDPRTDHQPIK 139 (316)
Q Consensus 64 ~Aa~~I~~I-~n~~~ILfV-str~~~q~aV~kfA~~tGa~~I~grw~-pGtLTN~~~~~-f~eP~llVV~DP~~d~qaI~ 139 (316)
.|..+...+ +.+-+++=| -+.+++.++|+++.+.... ..+ -||.++..+.. ..+=..=|++.|..+...++
T Consensus 28 ~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~-----~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~~vi~ 102 (212)
T PRK05718 28 DAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPE-----ALIGAGTVLNPEQLAQAIEAGAQFIVSPGLTPPLLK 102 (212)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCC-----CEEEEeeccCHHHHHHHHHcCCCEEECCCCCHHHHH
Confidence 344444454 344455533 3566788888888776442 233 38888876643 22333345677888889999
Q ss_pred HhhhcCCCEE
Q 021180 140 EAALGNIPTI 149 (316)
Q Consensus 140 EAs~lnIPtI 149 (316)
.|...+||.+
T Consensus 103 ~a~~~~i~~i 112 (212)
T PRK05718 103 AAQEGPIPLI 112 (212)
T ss_pred HHHHcCCCEe
Confidence 9999999998
No 234
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=28.51 E-value=2.2e+02 Score=29.77 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcc---CchhHHHHHHHHHHcCCceecCCccCCccCCc--------------cc-ccccC
Q 021180 61 KLQMAARVIVAIENPGDIIVQSA---RPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ--------------MQ-TSFNE 122 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVst---r~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~--------------~~-~~f~e 122 (316)
.+.+++.+|..-++ -++++|. +....+.+.+||+++|+..++.-.-.|.|-.- .. ..+.+
T Consensus 192 ~i~~~~~~L~~Akr--Pvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~ 269 (586)
T PRK06276 192 QIKKAAELIAEAER--PVILAGGGVIISGASEELIELSELVKIPVCTTLMGKGAFPEDHPLALGMVGMHGTKAANYSVTE 269 (586)
T ss_pred HHHHHHHHHHcCCC--eEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCCCCccCCCCCcccccCCCCCCCHHHHHHHHc
Confidence 45566666654333 3566665 23567889999999999876542222333211 11 23689
Q ss_pred CceEEEeCCCCC
Q 021180 123 PRLLILTDPRTD 134 (316)
Q Consensus 123 P~llVV~DP~~d 134 (316)
.|+|+++..+-+
T Consensus 270 aD~vl~lG~~~~ 281 (586)
T PRK06276 270 SDVLIAIGCRFS 281 (586)
T ss_pred CCEEEEECCCCC
Confidence 999999997644
No 235
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=28.42 E-value=1.9e+02 Score=29.07 Aligned_cols=57 Identities=14% Similarity=0.243 Sum_probs=35.4
Q ss_pred cCCceEEEeC-CCCCchhHHHhhhcCCCEEEEecCCCCC--CcceEEecCCCCCchhHHHH
Q 021180 121 NEPRLLILTD-PRTDHQPIKEAALGNIPTIAFCDTDSPM--RYVDIGIPANNKGKHSIGCL 178 (316)
Q Consensus 121 ~eP~llVV~D-P~~d~qaI~EAs~lnIPtIAL~DTds~~--~~VD~pIP~NndS~~SI~Li 178 (316)
..+|+||+.- -..++-.+++|...|||+++-.+--... ..--+.|=|- +++.+...|
T Consensus 65 ~~~d~vv~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGT-nGKTTTt~l 124 (461)
T PRK00421 65 KDADVVVYSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGT-HGKTTTTSL 124 (461)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECC-CCHHHHHHH
Confidence 4578776664 2345678999999999999754431111 1135777775 466655444
No 236
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=28.30 E-value=1.6e+02 Score=25.99 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=20.3
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcC--CC----EEEEecCC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGN--IP----TIAFCDTD 155 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~ln--IP----tIAL~DTd 155 (316)
..|+.|++.+...-.-+++.+...| +| +|++-++.
T Consensus 177 ~~~~ai~~~~~~~a~~~~~~l~~~g~~~p~~i~vig~d~~~ 217 (268)
T cd06273 177 PRPTAVICGNDVLALGALYEARRLGLSVPEDLSIVGFDDID 217 (268)
T ss_pred CCCCEEEEcChHHHHHHHHHHHHcCCCCCCceEEEecCChh
Confidence 4589998876443333445444444 46 77766543
No 237
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=28.30 E-value=55 Score=26.12 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=17.8
Q ss_pred CceEEEeC-CCCCchhHHHhhhcCCCEEEE
Q 021180 123 PRLLILTD-PRTDHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 123 P~llVV~D-P~~d~qaI~EAs~lnIPtIAL 151 (316)
..+||++. -..+...++-|...+||++.-
T Consensus 62 i~~iIltg~~~~~~~v~~la~~~~i~vi~t 91 (105)
T PF07085_consen 62 IACIILTGGLEPSEEVLELAKELGIPVIST 91 (105)
T ss_dssp ECEEEEETT----HHHHHHHHHHT-EEEE-
T ss_pred CCEEEEeCCCCCCHHHHHHHHHCCCEEEEE
Confidence 46777775 556677888888999888753
No 238
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=28.23 E-value=2.2e+02 Score=29.47 Aligned_cols=71 Identities=11% Similarity=0.205 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCceecCCccCCccCCccc--------ccccCCceEEEeC
Q 021180 62 LQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ--------TSFNEPRLLILTD 130 (316)
Q Consensus 62 L~~Aa~~I~~I~n~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~--------~~f~eP~llVV~D 130 (316)
+.+++..|.+-+ .-++++|.. ....+.+.+|++++|+..++.-.--|.|-+-.. ..+.+-|+||++.
T Consensus 196 ~~~~~~~L~~Ak--rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~~~g~~~~~~~~~aDlvl~lG 273 (554)
T TIGR03254 196 VDRAVELLKDAK--RPLILLGKGAAYAQADEEIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAAARSFALAEADVVMLVG 273 (554)
T ss_pred HHHHHHHHHhCC--CCEEEECCCccccChHHHHHHHHHHHCCCEEEcCCcceeCCCCCchhhhHHHHHHHhcCCEEEEEC
Confidence 445555554433 346667663 346788999999999988765434455543221 1367899999999
Q ss_pred CCCC
Q 021180 131 PRTD 134 (316)
Q Consensus 131 P~~d 134 (316)
.+-+
T Consensus 274 ~~~~ 277 (554)
T TIGR03254 274 ARLN 277 (554)
T ss_pred CCCc
Confidence 7754
No 239
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=28.15 E-value=1.2e+02 Score=28.19 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=27.1
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTD 155 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTd 155 (316)
+..|-||+.....+...++++...+||+|.+.|.+
T Consensus 118 ~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~~~~~ 152 (331)
T PRK14987 118 WNIDGLILTERTHTPRTLKMIEVAGIPVVELMDSQ 152 (331)
T ss_pred cCCCEEEEcCCCCCHHHHHHHHhCCCCEEEEecCC
Confidence 57899998765445567888888999999987654
No 240
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=28.03 E-value=2e+02 Score=29.70 Aligned_cols=108 Identities=14% Similarity=0.108 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCc-eecCCccCCccCCcccccccCCceEEEeCCC
Q 021180 54 NLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAH-AIAGRHTPGTFTNQMQTSFNEPRLLILTDPR 132 (316)
Q Consensus 54 NL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~-~I~grw~pGtLTN~~~~~f~eP~llVV~DP~ 132 (316)
.-.|=...|.+|+..+..-...-++.++|..+.- ..+++.++..|.. .| +|+| ..+ ...-++.-+++|.+.-.
T Consensus 329 ~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~-~~l~~~i~~~~l~~~V--~f~G--~~~-~~~~~~~adv~v~pS~~ 402 (500)
T TIGR02918 329 AKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGEK-QKLQKIINENQAQDYI--HLKG--HRN-LSEVYKDYELYLSASTS 402 (500)
T ss_pred ccccCHHHHHHHHHHHHhhCCCeEEEEEECchhH-HHHHHHHHHcCCCCeE--EEcC--CCC-HHHHHHhCCEEEEcCcc
Confidence 4455555666666555432223455678876543 3456666665542 22 2443 233 22335666777776633
Q ss_pred CC-chhHHHhhhcCCCEEEEecCC-CCCCcc-----eEEecCC
Q 021180 133 TD-HQPIKEAALGNIPTIAFCDTD-SPMRYV-----DIGIPAN 168 (316)
Q Consensus 133 ~d-~qaI~EAs~lnIPtIAL~DTd-s~~~~V-----D~pIP~N 168 (316)
+. ..++.||..+|+|+|+- |.. .+++.| -+.+|.+
T Consensus 403 Egfgl~~lEAma~G~PVI~~-dv~~G~~eiI~~g~nG~lv~~~ 444 (500)
T TIGR02918 403 EGFGLTLMEAVGSGLGMIGF-DVNYGNPTFIEDNKNGYLIPID 444 (500)
T ss_pred ccccHHHHHHHHhCCCEEEe-cCCCCCHHHccCCCCEEEEeCC
Confidence 33 46789999999999984 443 344444 3677754
No 241
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=28.00 E-value=1.3e+02 Score=31.17 Aligned_cols=89 Identities=19% Similarity=0.234 Sum_probs=55.2
Q ss_pred cCHHHHHHHHHHHHHHHHHh--hCC-CcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCccc----ccccCCce
Q 021180 53 INLGKTWEKLQMAARVIVAI--ENP-GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ----TSFNEPRL 125 (316)
Q Consensus 53 INL~kT~ekL~~Aa~~I~~I--~n~-~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~----~~f~eP~l 125 (316)
-....|. .+.-+|.++ +.| -.|++...-+.+.+.+.+ ..|.. +..+++|= -|..- ..+..||+
T Consensus 57 aSVGEv~----a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~---~~~~~-v~h~YlP~--D~~~~v~rFl~~~~P~l 126 (419)
T COG1519 57 ASVGEVL----AALPLVRALRERFPDLRILVTTMTPTGAERAAA---LFGDS-VIHQYLPL--DLPIAVRRFLRKWRPKL 126 (419)
T ss_pred cchhHHH----HHHHHHHHHHHhCCCCCEEEEecCccHHHHHHH---HcCCC-eEEEecCc--CchHHHHHHHHhcCCCE
Confidence 4455552 344556666 233 366666656777655443 33332 44556662 22221 12579999
Q ss_pred EEEeCCCCCchhHHHhhhcCCCEEEE
Q 021180 126 LILTDPRTDHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 126 lVV~DP~~d~qaI~EAs~lnIPtIAL 151 (316)
+|++...-=...|.||.+.|||+|=+
T Consensus 127 ~Ii~EtElWPnli~e~~~~~~p~~Lv 152 (419)
T COG1519 127 LIIMETELWPNLINELKRRGIPLVLV 152 (419)
T ss_pred EEEEeccccHHHHHHHHHcCCCEEEE
Confidence 99998766678999999999999743
No 242
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=27.85 E-value=2.9e+02 Score=22.87 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccc-cCCceEEEeCC-CCCc
Q 021180 58 TWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSF-NEPRLLILTDP-RTDH 135 (316)
Q Consensus 58 T~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f-~eP~llVV~DP-~~d~ 135 (316)
=.+.+..|++.+..-.++-.++|++...... ...+.+...+... +=++++..........+ +.-|+++...- ..-.
T Consensus 118 ~~~~~~~a~~~l~~~~~~~~~~i~G~~~~~~-~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~ 195 (229)
T cd01635 118 GLDDLIEAFALLKERGPDLKLVIAGDGPERE-YLEELLAALLLLD-RVIFLGGLDPEELLALLLAAADVFVLPSLREGFG 195 (229)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEeCCCChH-HHHHHHHhcCCcc-cEEEeCCCCcHHHHHHHhhcCCEEEecccccCcC
Confidence 3344555555554333456778888865433 2222233322210 11223322111111222 33676665432 1225
Q ss_pred hhHHHhhhcCCCEEEE
Q 021180 136 QPIKEAALGNIPTIAF 151 (316)
Q Consensus 136 qaI~EAs~lnIPtIAL 151 (316)
..+.||...|+|+|+-
T Consensus 196 ~~~~Eam~~g~pvi~s 211 (229)
T cd01635 196 LVVLEAMACGLPVIAT 211 (229)
T ss_pred hHHHHHHhCCCCEEEc
Confidence 7889999999999974
No 243
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=27.69 E-value=2.5e+02 Score=29.57 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCc---hhHHHHHHHHHHcCCceecCCccCCccCCcc---------------ccccc
Q 021180 60 EKLQMAARVIVAIENPGDIIVQSARP---YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFN 121 (316)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~ILfVstr~---~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~---------------~~~f~ 121 (316)
+.+.+++.+|..-+++ ++++|..- .....+.+||+++|+..++.---.|.|-.-. ...++
T Consensus 212 ~~v~~~~~~L~~AkrP--vI~~G~g~~~~~a~~~l~~lae~l~~pV~tt~~gkg~~p~~hpl~~G~~G~~g~~~~~~~l~ 289 (616)
T PRK07418 212 RQINAALKLIEEAERP--LLYVGGGAISAGAHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAVT 289 (616)
T ss_pred HHHHHHHHHHHhCCCC--EEEECCCcCcccHHHHHHHHHHHHCCCEEEccCCCcCCCCCCcccccCCCCCCCHHHHHHHH
Confidence 3466666666654444 67777643 5678899999999997764322223332110 11357
Q ss_pred CCceEEEeCCCCC
Q 021180 122 EPRLLILTDPRTD 134 (316)
Q Consensus 122 eP~llVV~DP~~d 134 (316)
+.|+|+++..+-+
T Consensus 290 ~aDlvL~vG~~~~ 302 (616)
T PRK07418 290 ECDLLIAVGARFD 302 (616)
T ss_pred hCCEEEEEcCCCC
Confidence 9999999997654
No 244
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=27.29 E-value=2.5e+02 Score=25.17 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=47.8
Q ss_pred HHHHHh-hCCCcEEEEccCch-hHHHHHHHHHHcCCceecCCccCCccCCccc------ccccCCceEEEe--CCCCCch
Q 021180 67 RVIVAI-ENPGDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ------TSFNEPRLLILT--DPRTDHQ 136 (316)
Q Consensus 67 ~~I~~I-~n~~~ILfVstr~~-~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~------~~f~eP~llVV~--DP~~d~q 136 (316)
.++... .++.+|.|+|+++. ..+++.++.+.-...-|.|+ .|-|.-... ++-..||+|+|- -|+.+.-
T Consensus 39 ~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~--~g~f~~~~~~~i~~~I~~s~~dil~VglG~PkQE~~ 116 (177)
T TIGR00696 39 ELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGA--FGPLEPEERKAALAKIARSGAGIVFVGLGCPKQEIW 116 (177)
T ss_pred HHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEE--CCCCChHHHHHHHHHHHHcCCCEEEEEcCCcHhHHH
Confidence 344444 45668999999975 45666666665444445565 677742211 123689998887 5777755
Q ss_pred hHHHhhhcCCCE
Q 021180 137 PIKEAALGNIPT 148 (316)
Q Consensus 137 aI~EAs~lnIPt 148 (316)
.-+-...++.++
T Consensus 117 ~~~~~~~~~~~v 128 (177)
T TIGR00696 117 MRNHRHLKPDAV 128 (177)
T ss_pred HHHhHHhCCCcE
Confidence 544334555543
No 245
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=27.28 E-value=5.3e+02 Score=27.95 Aligned_cols=127 Identities=19% Similarity=0.211 Sum_probs=69.7
Q ss_pred CccccCHHHHHHHHHHHHHHHHHhh---------------CCCcEEEEccC---chhHHHHHHHHHHcCCceecC--C--
Q 021180 49 GIYIINLGKTWEKLQMAARVIVAIE---------------NPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAG--R-- 106 (316)
Q Consensus 49 Gi~IINL~kT~ekL~~Aa~~I~~I~---------------n~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~g--r-- 106 (316)
...-|+.+..++ ++++.|..+. .+..|.++++- +....++.||+...|..++.. |
T Consensus 67 ~~~~iSWdeAld---~iA~klk~i~~~~~~~~~~~g~~~~g~~si~~~gs~~~~nE~~~~~~kl~r~lGt~~id~~ar~C 143 (649)
T cd02752 67 KWEEISWDEALD---EIARKMKDIRDASFVEKNAAGVVVNRPDSIAFLGSAKLSNEECYLIRKFARALGTNNLDHQARIU 143 (649)
T ss_pred CEEEeCHHHHHH---HHHHHHHHHHHHhcccccccccccCCCceEEEEccCCCCchHHHHHHHHHHHhCCCcccCCcchh
Confidence 455566665544 4445555442 24457777653 334567889999988765532 2
Q ss_pred -----------ccCCccCCcccccccCCceEEEeC--CCCCch----hHHHhhhc-CCCEEEEecCCCCC--CcceEEec
Q 021180 107 -----------HTPGTFTNQMQTSFNEPRLLILTD--PRTDHQ----PIKEAALG-NIPTIAFCDTDSPM--RYVDIGIP 166 (316)
Q Consensus 107 -----------w~pGtLTN~~~~~f~eP~llVV~D--P~~d~q----aI~EAs~l-nIPtIAL~DTds~~--~~VD~pIP 166 (316)
|=.|..||... -+..-|+||+.. |...|. -|++|..- |..+|. +|...+. ..-|+-||
T Consensus 144 ~~~tv~~l~~~~G~ga~tns~~-Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIv-VDPR~t~Ta~~AD~~l~ 221 (649)
T cd02752 144 HSPTVAGLANTFGRGAMTNSWN-DIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIV-VDPRFTRTAAKADLYVP 221 (649)
T ss_pred hhHHHHHHHhhcCCCCCCCCHH-HHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEE-EcCCCCchhHhcCEeeC
Confidence 22355666432 246678999985 544433 26788776 665554 4543322 23566665
Q ss_pred CCCCCchhHHHHHHHH
Q 021180 167 ANNKGKHSIGCLFWLL 182 (316)
Q Consensus 167 ~NndS~~SI~Li~~lL 182 (316)
.+ .-.-+.|+..|+
T Consensus 222 ir--PGTD~All~gmi 235 (649)
T cd02752 222 IR--SGTDIAFLGGMI 235 (649)
T ss_pred cC--CChHHHHHHHHH
Confidence 53 233344544433
No 246
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=26.92 E-value=2.4e+02 Score=29.51 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCceecCCccCCccCCccc---------------ccccC
Q 021180 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---------------TSFNE 122 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~---------------~~f~e 122 (316)
.+..++..|.+-+ .-++++|.. ......+.+||+++|+..++.---.|.|-+..- ..+++
T Consensus 189 ~i~~a~~~L~~A~--rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tT~~gkg~~p~~hpl~~G~~g~~g~~~~~~~~~~ 266 (588)
T PRK07525 189 SLAEAAELLSEAK--FPVILSGAGVVLSDAIEECKALAERLDAPVACGYLHNDAFPGSHPLWVGPLGYNGSKAAMELIAK 266 (588)
T ss_pred HHHHHHHHHHhCC--CCEEEECCCccccChHHHHHHHHHHhCCCeEEcccccccCCCCCccccccCcccCcHHHHHHHHh
Confidence 3555555554332 336677763 356788899999999987764222244433211 12579
Q ss_pred CceEEEeCCCCC
Q 021180 123 PRLLILTDPRTD 134 (316)
Q Consensus 123 P~llVV~DP~~d 134 (316)
.|+||++..+-+
T Consensus 267 aDlvl~lG~~l~ 278 (588)
T PRK07525 267 ADVVLALGTRLN 278 (588)
T ss_pred CCEEEEECCCCc
Confidence 999999997654
No 247
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=26.73 E-value=2.6e+02 Score=24.90 Aligned_cols=88 Identities=13% Similarity=0.067 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHH-HcCCceecCCccCCccCCcccccccCCceEEEeCCCC-Cch
Q 021180 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAK-YTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT-DHQ 136 (316)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~-~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~-d~q 136 (316)
++.|..|++.+..-...-+++++|...... .+.++.. ..+... +-.|++ .. +....-+..-|++|+..... -..
T Consensus 208 ~~~li~a~~~l~~~~~~~~l~i~G~~~~~~-~~~~~~~~~~~~~~-~v~~~g-~~-~~~~~~~~~adi~v~ps~~e~~~~ 283 (365)
T cd03807 208 HATLLRAAALLLKKFPNARLLLVGDGPDRA-NLELLALKELGLED-KVILLG-ER-SDVPALLNALDVFVLSSLSEGFPN 283 (365)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCcchh-HHHHHHHHhcCCCc-eEEEcc-cc-ccHHHHHHhCCEEEeCCccccCCc
Confidence 344444444443322234566776644332 2233333 322211 112332 21 22223356677776654321 145
Q ss_pred hHHHhhhcCCCEEE
Q 021180 137 PIKEAALGNIPTIA 150 (316)
Q Consensus 137 aI~EAs~lnIPtIA 150 (316)
.+.||..+|+|+|+
T Consensus 284 ~~~Ea~a~g~PvI~ 297 (365)
T cd03807 284 VLLEAMACGLPVVA 297 (365)
T ss_pred HHHHHHhcCCCEEE
Confidence 78999999999998
No 248
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=26.68 E-value=2.2e+02 Score=25.03 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=22.2
Q ss_pred CCceEEEeCCCCC--chhHHHhhhcCCCEEEEec
Q 021180 122 EPRLLILTDPRTD--HQPIKEAALGNIPTIAFCD 153 (316)
Q Consensus 122 eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~D 153 (316)
.+|.||+.....+ ...++++...+||+|.+-.
T Consensus 55 ~~dgii~~~~~~~~~~~~l~~l~~~~ipvv~~~~ 88 (268)
T cd06323 55 GVDAIIINPTDSDAVVPAVKAANEAGIPVFTIDR 88 (268)
T ss_pred CCCEEEEcCCChHHHHHHHHHHHHCCCcEEEEcc
Confidence 4677777643322 2467888888999999843
No 249
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=26.66 E-value=2.6e+02 Score=24.93 Aligned_cols=92 Identities=5% Similarity=0.038 Sum_probs=42.4
Q ss_pred HHHHHHHH-hhCCCcEEEEccCch------hHHHHHHHHHHc-CCceecCCccCCccCCccc------ccccCCceEEEe
Q 021180 64 MAARVIVA-IENPGDIIVQSARPY------GQRAVLKFAKYT-HAHAIAGRHTPGTFTNQMQ------TSFNEPRLLILT 129 (316)
Q Consensus 64 ~Aa~~I~~-I~n~~~ILfVstr~~------~q~aV~kfA~~t-Ga~~I~grw~pGtLTN~~~------~~f~eP~llVV~ 129 (316)
.+++.+.. ....++|+|+.+.+. ..+.+.+..+.. |...+.............. .....|+.|+..
T Consensus 110 ~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 189 (275)
T cd06320 110 RGAEWIIDKLAEGGKVAIIEGKAGAFAAEQRTEGFTEAIKKASGIEVVASQPADWDREKAYDVATTILQRNPDLKAIYCN 189 (275)
T ss_pred HHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHHHhhCCCcEEEEecCCCccHHHHHHHHHHHHHhCCCccEEEEC
Confidence 33444443 234568888754321 124455566665 6543321111111111000 012457777776
Q ss_pred CCCCCchhHHHhhhc----CCCEEEEecCC
Q 021180 130 DPRTDHQPIKEAALG----NIPTIAFCDTD 155 (316)
Q Consensus 130 DP~~d~qaI~EAs~l----nIPtIAL~DTd 155 (316)
+-..-..+++-+... .|.+|++-|+.
T Consensus 190 ~d~~a~~~~~al~~~g~~~di~vig~d~~~ 219 (275)
T cd06320 190 NDTMALGVVEAVKNAGKQGKVLVVGTDGIP 219 (275)
T ss_pred CchhHHHHHHHHHhcCCCCCeEEEecCCCH
Confidence 533333333433444 45688887775
No 250
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.57 E-value=1.9e+02 Score=26.06 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=23.9
Q ss_pred CCceEEEeC--CCCCchhHHHhhhcCCCEEEEecCCCC
Q 021180 122 EPRLLILTD--PRTDHQPIKEAALGNIPTIAFCDTDSP 157 (316)
Q Consensus 122 eP~llVV~D--P~~d~qaI~EAs~lnIPtIAL~DTds~ 157 (316)
.+|.||+.- +......++++...+||+|.+ |++.+
T Consensus 55 ~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~-~~~~~ 91 (272)
T cd06313 55 GWDFIAVDPLGIGTLTEAVQKAIARGIPVIDM-GTLIA 91 (272)
T ss_pred CCCEEEEcCCChHHhHHHHHHHHHCCCcEEEe-CCCCC
Confidence 467777742 223356688888899999987 66543
No 251
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=26.52 E-value=8.6e+02 Score=26.42 Aligned_cols=116 Identities=18% Similarity=0.119 Sum_probs=68.6
Q ss_pred hhCCCcEEEEccCchhHHHHHHHHHHcC-Cce------ecCCccCCccCCcccccccCCceEEEeCCCCC-----chhHH
Q 021180 72 IENPGDIIVQSARPYGQRAVLKFAKYTH-AHA------IAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD-----HQPIK 139 (316)
Q Consensus 72 I~n~~~ILfVstr~~~q~aV~kfA~~tG-a~~------I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d-----~qaI~ 139 (316)
+.+..+++|+|.....-=+ ++.|.+.. ..| -+|-+..|.+- -+.+=-.||++.|..+ ..-|+
T Consensus 452 l~~~~~~~~lGRG~~ypvA-lEgALKlKEIsYIHAEgy~aGElKHGpiA-----Lid~~~pVi~i~p~~~~~ek~~sni~ 525 (597)
T COG0449 452 LADAKDFFFLGRGVLYPVA-LEGALKLKEISYIHAEGYAAGELKHGPIA-----LIDENTPVIAIAPKPDLFEKTKSNIQ 525 (597)
T ss_pred hcccCCEEEEcCCCCcHhH-hhhhhhhhhheeeccccccchhhccCceE-----EEcCCCcEEEEeCcchHHHHHHHHHH
Confidence 4567899999987654322 23333322 222 23444444321 1222223555555543 56789
Q ss_pred HhhhcCCCEEEEecCCC--CCCcceEEecCCCCCchhHHHH--HHHHHHHHHHhhcCC
Q 021180 140 EAALGNIPTIAFCDTDS--PMRYVDIGIPANNKGKHSIGCL--FWLLARMVLQMRGTI 193 (316)
Q Consensus 140 EAs~lnIPtIAL~DTds--~~~~VD~pIP~NndS~~SI~Li--~~lLaraVl~~rG~i 193 (316)
|....+-.+|.++|.+. .-..+.+-+|-.++-...+-.+ ++||+-.+--.||..
T Consensus 526 Ev~aRg~~~i~i~~~~~~~~~~~~~i~~p~~~e~laPi~~~iPlQLLAY~iA~~kG~d 583 (597)
T COG0449 526 EVRARGGKIIVIADEGDVAEDGDDLILLPEVDELLAPLLYTIPLQLLAYHIALAKGID 583 (597)
T ss_pred HHHcCCCeEEEEecCCcccccCceEEecCCCcchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999764 2233445556666544444333 788888888888874
No 252
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=26.50 E-value=2e+02 Score=29.80 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCceecCCccCCccCCc---------------ccccccC
Q 021180 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ---------------MQTSFNE 122 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~---------------~~~~f~e 122 (316)
.+..++..|..-+ .-++++|.. ......+.+||+++|+..++.---.|.|-.. ....+.+
T Consensus 200 ~i~~~~~~L~~Ak--rPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~ 277 (564)
T PRK08155 200 SIRDAAAMINAAK--RPVLYLGGGVINSGAPARARELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYILQE 277 (564)
T ss_pred HHHHHHHHHHhCC--CCEEEECCCccccchHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCCCHHHHHHHHh
Confidence 3555555554433 336667753 2467889999999999877631112222211 1123578
Q ss_pred CceEEEeCCCCCc
Q 021180 123 PRLLILTDPRTDH 135 (316)
Q Consensus 123 P~llVV~DP~~d~ 135 (316)
.|+|+++..+-+.
T Consensus 278 aDlvl~lG~~~~~ 290 (564)
T PRK08155 278 ADLLIVLGARFDD 290 (564)
T ss_pred CCEEEEECCCCCc
Confidence 9999999987653
No 253
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=26.47 E-value=2.4e+02 Score=25.79 Aligned_cols=87 Identities=21% Similarity=0.246 Sum_probs=39.6
Q ss_pred HHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCc-eecCCccCCccCCcccccccCCceEEEeCCCCCc-hh
Q 021180 61 KLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAH-AIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDH-QP 137 (316)
Q Consensus 61 kL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA~~tGa~-~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d~-qa 137 (316)
.+..|+|+|+. +--.|.|-+-|.+. .+.|..+|...-.. .-+.+|.. ..+|+. .+..-|-|+++.|..+. .+
T Consensus 23 ~iedaARlLAQA~vgeG~IYi~G~~E--m~~v~~~Al~g~E~l~~~k~l~~-~~~~~~--~lt~~DRVllfs~~~~~~e~ 97 (172)
T PF10740_consen 23 SIEDAARLLAQAIVGEGTIYIYGFGE--MEAVEAEALYGAEPLPSAKRLSE-DLENFD--ELTETDRVLLFSPFSTDEEA 97 (172)
T ss_dssp HHHHHHHHHHHHHHTT--EEEEE-GG--GGGGHHHHHCSTT--TTEEE--T-T----------TT-EEEEEES-S--HHH
T ss_pred hHHHHHHHHHHHHhcCCEEEEEecCh--HHHHHHHHHcCCCCCchhhcCcc-cccccc--cccccceEEEEeCCCCCHHH
Confidence 57788999874 55667777766653 23454555443222 23335552 222221 13344666666666655 55
Q ss_pred HH---HhhhcCCCEEEEe
Q 021180 138 IK---EAALGNIPTIAFC 152 (316)
Q Consensus 138 I~---EAs~lnIPtIAL~ 152 (316)
++ .....+||++++|
T Consensus 98 ~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 98 VALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp HHHHHHHHHHT--EEEEE
T ss_pred HHHHHHHHHCCCCEEEEE
Confidence 54 4445599999999
No 254
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=26.30 E-value=2.9e+02 Score=25.28 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=42.1
Q ss_pred cEEEEccCchhHHHHHHHHHHcC-CceecCCccCCccCCcccccccCCceEEEeC-C---CCCc-------hhHHHhhhc
Q 021180 77 DIIVQSARPYGQRAVLKFAKYTH-AHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-P---RTDH-------QPIKEAALG 144 (316)
Q Consensus 77 ~ILfVstr~~~q~aV~kfA~~tG-a~~I~grw~pGtLTN~~~~~f~eP~llVV~D-P---~~d~-------qaI~EAs~l 144 (316)
.|+++..-.+....|.+..+..| .+... .+-+-+... .....|+.|||+. | ..+. ..|.++..-
T Consensus 3 ~ilIld~g~q~~~li~r~~re~g~v~~e~---~~~~~~~~~-~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p 78 (198)
T COG0518 3 KILILDFGGQYLGLIARRLRELGYVYSEI---VPYTGDAEE-LPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVP 78 (198)
T ss_pred EEEEEeCCCcHhHHHHHHHHHcCCceEEE---EeCCCCccc-ccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCC
Confidence 57788777676667777777777 43222 222223322 2334679999985 3 2222 345555555
Q ss_pred CCCEEEEe
Q 021180 145 NIPTIAFC 152 (316)
Q Consensus 145 nIPtIAL~ 152 (316)
+.|+++||
T Consensus 79 ~~pvLGIC 86 (198)
T COG0518 79 GKPVLGIC 86 (198)
T ss_pred CCCEEEEC
Confidence 66699998
No 255
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=25.88 E-value=3e+02 Score=25.88 Aligned_cols=97 Identities=12% Similarity=0.085 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHhh---CCCcEEEEccCchh-------HHHHHHHHHH-cCCceecCCccCCccCCcccc-cccCCc
Q 021180 57 KTWEKLQMAARVIVAIE---NPGDIIVQSARPYG-------QRAVLKFAKY-THAHAIAGRHTPGTFTNQMQT-SFNEPR 124 (316)
Q Consensus 57 kT~ekL~~Aa~~I~~I~---n~~~ILfVstr~~~-------q~aV~kfA~~-tGa~~I~grw~pGtLTN~~~~-~f~eP~ 124 (316)
|=.+.|..|+.-+..-. ..-.++++|..+.. .+-+++.++. .|-. ..-..-|.+.+.... -++.-|
T Consensus 224 Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~--~~V~f~g~~~~~~~~~~l~~ad 301 (392)
T cd03805 224 KNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLE--DQVIFLPSISDSQKELLLSSAR 301 (392)
T ss_pred CChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCC--ceEEEeCCCChHHHHHHHhhCe
Confidence 33444555554443321 23467788864321 2344555554 3322 011223455554322 246667
Q ss_pred eEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCC
Q 021180 125 LLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSP 157 (316)
Q Consensus 125 llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~ 157 (316)
++++.. ..+ ...+.||..+|+|+|+. |....
T Consensus 302 ~~l~~s-~~E~~g~~~lEAma~G~PvI~s-~~~~~ 334 (392)
T cd03805 302 ALLYTP-SNEHFGIVPLEAMYAGKPVIAC-NSGGP 334 (392)
T ss_pred EEEECC-CcCCCCchHHHHHHcCCCEEEE-CCCCc
Confidence 776653 333 45778999999999995 44443
No 256
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=25.80 E-value=1.4e+02 Score=26.21 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=23.0
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEE
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL 151 (316)
+.+|.||++....+...+..+...+||+|.+
T Consensus 54 ~~~dgii~~~~~~~~~~~~~~~~~~ipvv~~ 84 (259)
T cd01542 54 QKVDGIILLATTITDEHREAIKKLNVPVVVV 84 (259)
T ss_pred cCCCEEEEeCCCCCHHHHHHHhcCCCCEEEE
Confidence 4578888876554445667777789999988
No 257
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=25.80 E-value=95 Score=26.95 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=23.4
Q ss_pred ccCCceEEEeCCCCC-------chhHHHhhhcCCCEEEEe
Q 021180 120 FNEPRLLILTDPRTD-------HQPIKEAALGNIPTIAFC 152 (316)
Q Consensus 120 f~eP~llVV~DP~~d-------~qaI~EAs~lnIPtIAL~ 152 (316)
...+|.|||+.-..+ ...++++...++|++|+|
T Consensus 40 ~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC 79 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGIC 79 (192)
T ss_dssp TTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEET
T ss_pred hcCCCEEEECCcCCccccccccccccccccccceEEEEEe
Confidence 455677777752221 346788888999999997
No 258
>PRK11018 hypothetical protein; Provisional
Probab=25.78 E-value=1.6e+02 Score=22.66 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=28.7
Q ss_pred HHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceec
Q 021180 66 ARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA 104 (316)
Q Consensus 66 a~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~ 104 (316)
.+.|..+..+..+.++.+.+...+-|..+++..|...+.
T Consensus 26 kk~l~~l~~G~~L~V~~d~~~a~~di~~~~~~~G~~v~~ 64 (78)
T PRK11018 26 LEALPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLD 64 (78)
T ss_pred HHHHHhCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEE
Confidence 333445555555668888888889999999999987754
No 259
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=25.74 E-value=98 Score=30.01 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=25.1
Q ss_pred cCCceEEEeCCCCC---chhHHHh-hhcCCCEEEEecCCC
Q 021180 121 NEPRLLILTDPRTD---HQPIKEA-ALGNIPTIAFCDTDS 156 (316)
Q Consensus 121 ~eP~llVV~DP~~d---~qaI~EA-s~lnIPtIAL~DTds 156 (316)
+.||++|++.|+.- ...-+|. +..|||+|-|.|.-.
T Consensus 59 ~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~ 98 (277)
T PRK00994 59 WKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPG 98 (277)
T ss_pred hCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCc
Confidence 58999999998854 2233443 346999999976533
No 260
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.72 E-value=2.4e+02 Score=24.92 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=24.3
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCC
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTds 156 (316)
+.+|.||+.....+ ...+.++...+||+|.+ |+..
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~-~~~~ 90 (267)
T cd06322 54 KKVDAIVLSPVDSKGIRAAIAKAKKAGIPVITV-DIAA 90 (267)
T ss_pred cCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEE-cccC
Confidence 45788888754333 34578888889999987 5543
No 261
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=25.69 E-value=5.7e+02 Score=24.06 Aligned_cols=73 Identities=14% Similarity=0.041 Sum_probs=43.3
Q ss_pred CCcEEEEcc-CchhHH---HHHHHHHHcCCceecCCccCCccCCccc----ccccCCceEEEeCCCC-CchhHHHhhhcC
Q 021180 75 PGDIIVQSA-RPYGQR---AVLKFAKYTHAHAIAGRHTPGTFTNQMQ----TSFNEPRLLILTDPRT-DHQPIKEAALGN 145 (316)
Q Consensus 75 ~~~ILfVst-r~~~q~---aV~kfA~~tGa~~I~grw~pGtLTN~~~----~~f~eP~llVV~DP~~-d~qaI~EAs~ln 145 (316)
..+|.+|.. ..+++. .+++.++..|...+...+.+..-|++.. ..-..||.|++..... -...+++++..|
T Consensus 144 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g 223 (362)
T cd06343 144 NAKIAVLYQNDDFGKDYLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGADVVVLATTPKFAAQAIRKAAELG 223 (362)
T ss_pred CceEEEEEeccHHHHHHHHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHHHHcC
Confidence 356655544 344443 3444555567665554455554455542 1236799999886543 355789999998
Q ss_pred CC
Q 021180 146 IP 147 (316)
Q Consensus 146 IP 147 (316)
+.
T Consensus 224 ~~ 225 (362)
T cd06343 224 WK 225 (362)
T ss_pred CC
Confidence 74
No 262
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=25.66 E-value=1.4e+02 Score=30.68 Aligned_cols=43 Identities=21% Similarity=0.104 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCce
Q 021180 60 EKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHA 102 (316)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~ 102 (316)
+.|.+|+.+|+.-++|--.-.-+|....|++-.+.++++|+..
T Consensus 67 eAie~Aa~ILv~aKrPllyg~s~tscEA~~~gielaE~~gavi 109 (429)
T COG1029 67 EAIEKAAEILVNAKRPLLYGWSSTSCEAQELGIELAEKLGAVI 109 (429)
T ss_pred HHHHHHHHHHHhccCceEeccccchHHHHHHHHHHHHHhCcEe
Confidence 5577899998887676444445667889999999999999865
No 263
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=25.66 E-value=3.5e+02 Score=25.57 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=23.2
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDT 154 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DT 154 (316)
..||+||. | ....+..=|..++||+|.+.+.
T Consensus 92 ~~pDlVi~-d--~~~~~~~aA~~~~iP~i~i~~q 122 (321)
T TIGR00661 92 YNPDLIIS-D--FEYSTVVAAKLLKIPVICISNQ 122 (321)
T ss_pred cCCCEEEE-C--CchHHHHHHHhcCCCEEEEecc
Confidence 57998764 4 2334577889999999999874
No 264
>PRK12362 germination protease; Provisional
Probab=25.50 E-value=4.6e+02 Score=26.22 Aligned_cols=51 Identities=27% Similarity=0.296 Sum_probs=34.9
Q ss_pred cCCceEEEeCCCC--------------------------CchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchh
Q 021180 121 NEPRLLILTDPRT--------------------------DHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHS 174 (316)
Q Consensus 121 ~eP~llVV~DP~~--------------------------d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~S 174 (316)
..|++||.+|... ++..|.| ..+|+||||+- -|..||-+.-+|| +
T Consensus 171 ~kpd~IIAIDALaar~~~Rl~~tIQisdtGI~PGSGVGN~R~~l~~-etLGVPVIAIG----VPTVVdAatI~~D----~ 241 (318)
T PRK12362 171 IKPDLVIAIDALAARSVERVNTTIQISDTGISPGSGVGNKRMGINE-ETLGVPVIAIG----VPTVVDAATIAND----T 241 (318)
T ss_pred cCCCEEEEEeccccCCHHHccCeEEECCCCCCCCccCCCcccccCH-HHcCCCEEEEc----CCeeechHHHHHH----H
Confidence 5899999999433 3567777 45699999983 3456777777765 4
Q ss_pred HHHHHH
Q 021180 175 IGCLFW 180 (316)
Q Consensus 175 I~Li~~ 180 (316)
+.+++.
T Consensus 242 i~~~~~ 247 (318)
T PRK12362 242 IDLVLD 247 (318)
T ss_pred HHHHHH
Confidence 554443
No 265
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.44 E-value=1.1e+02 Score=27.55 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=26.0
Q ss_pred CCcccccccCCceEEEeCCCCCchhHHHhhh-cCCCEEEEec
Q 021180 113 TNQMQTSFNEPRLLILTDPRTDHQPIKEAAL-GNIPTIAFCD 153 (316)
Q Consensus 113 TN~~~~~f~eP~llVV~DP~~d~qaI~EAs~-lnIPtIAL~D 153 (316)
.|.....--.|||||..+.......+.+... .||||+.+..
T Consensus 65 ~n~E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 65 PNYEKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred CCHHHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 3555555578999998765433223344443 8999998853
No 266
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=25.43 E-value=2.5e+02 Score=27.64 Aligned_cols=97 Identities=11% Similarity=0.016 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHhh-----CC-CcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccC-CcccccccCCceEE
Q 021180 55 LGKTWEKLQMAARVIVAIE-----NP-GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFT-NQMQTSFNEPRLLI 127 (316)
Q Consensus 55 L~kT~ekL~~Aa~~I~~I~-----n~-~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLT-N~~~~~f~eP~llV 127 (316)
-.|-++.|..|++.+.... .+ -.++++|..+. ...+++.++..|.. +-.+++|.+. +....-+..-|+.+
T Consensus 243 ~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~-~~~l~~~~~~~~l~--~~~~~~g~~~~~~~~~~l~~aDv~v 319 (415)
T cd03816 243 PDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPL-KEKYLERIKELKLK--KVTIRTPWLSAEDYPKLLASADLGV 319 (415)
T ss_pred CCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCcc-HHHHHHHHHHcCCC--cEEEEcCcCCHHHHHHHHHhCCEEE
Confidence 4455667778887776431 12 35567787654 44556677766643 2234555442 22223356678776
Q ss_pred EeCCCCC----chhHHHhhhcCCCEEEEecCC
Q 021180 128 LTDPRTD----HQPIKEAALGNIPTIAFCDTD 155 (316)
Q Consensus 128 V~DP~~d----~qaI~EAs~lnIPtIAL~DTd 155 (316)
+..+... ...+-||.-+|+|+|+ .|..
T Consensus 320 ~~~~~~~~~~~p~~~~Eama~G~PVI~-s~~~ 350 (415)
T cd03816 320 SLHTSSSGLDLPMKVVDMFGCGLPVCA-LDFK 350 (415)
T ss_pred EccccccccCCcHHHHHHHHcCCCEEE-eCCC
Confidence 5433211 3458999999999998 4443
No 267
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=25.36 E-value=3.3e+02 Score=24.39 Aligned_cols=35 Identities=11% Similarity=0.063 Sum_probs=24.2
Q ss_pred ccCCceEEEeCCCCC------chhHHHhhhcCCCEEEEecC
Q 021180 120 FNEPRLLILTDPRTD------HQPIKEAALGNIPTIAFCDT 154 (316)
Q Consensus 120 f~eP~llVV~DP~~d------~qaI~EAs~lnIPtIAL~DT 154 (316)
++.-|++|+...... ...+-||...|+|+|+-=..
T Consensus 292 ~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~ 332 (394)
T cd03794 292 LAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDG 332 (394)
T ss_pred HHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCC
Confidence 456677777654432 23478999999999986433
No 268
>PRK11269 glyoxylate carboligase; Provisional
Probab=25.06 E-value=2.5e+02 Score=29.43 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcc---CchhHHHHHHHHHHcCCceecCCccCCccCCcc----------------ccccc
Q 021180 61 KLQMAARVIVAIENPGDIIVQSA---RPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM----------------QTSFN 121 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVst---r~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~----------------~~~f~ 121 (316)
.+.++++.|..-++ -++++|. +....+.+.+||+++|+..++.---.|.|-+.. ...+.
T Consensus 192 ~i~~~~~~L~~Akr--Pvil~G~g~~~~~a~~~l~~lae~~g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~~~~~~~~ 269 (591)
T PRK11269 192 QIEKALEMLNAAER--PLIVAGGGVINADASDLLVEFAELTGVPVIPTLMGWGAIPDDHPLMAGMVGLQTSHRYGNATLL 269 (591)
T ss_pred HHHHHHHHHHhCCC--cEEEECCCCcccCHHHHHHHHHHHhCCCeEecccccCcCCCCChhhccCCcCCCCcHHHHHHHH
Confidence 34555555544333 3566665 335678899999999997765422223332210 11257
Q ss_pred CCceEEEeCCCCC
Q 021180 122 EPRLLILTDPRTD 134 (316)
Q Consensus 122 eP~llVV~DP~~d 134 (316)
+.|+||++..+-+
T Consensus 270 ~aDlvl~lG~~~~ 282 (591)
T PRK11269 270 ASDFVLGIGNRWA 282 (591)
T ss_pred hCCEEEEeCCCCC
Confidence 9999999997644
No 269
>PLN02470 acetolactate synthase
Probab=25.03 E-value=3e+02 Score=28.80 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccCc-hhHHHHHHHHHHcCCceecCCccCCccCCccc---------------ccccCCc
Q 021180 61 KLQMAARVIVAIENPGDIIVQSARP-YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---------------TSFNEPR 124 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVstr~-~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~---------------~~f~eP~ 124 (316)
.+.+++..|.+-+ .-++++|..- .....+.+||+++|+..++.---.|.|-.... ..+.+.|
T Consensus 204 ~i~~~~~~L~~A~--rPvI~~G~g~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~~~~~~~~aD 281 (585)
T PLN02470 204 QLEQIVRLISESK--RPVVYVGGGCLNSSEELREFVELTGIPVASTLMGLGAFPASDELSLQMLGMHGTVYANYAVDSAD 281 (585)
T ss_pred HHHHHHHHHHcCC--CCEEEECCChhhhHHHHHHHHHHhCCCEEEccCccccCCCCCcccccCCCCCCCHHHHHHHHhCC
Confidence 4556666655433 3366677743 46678899999999977654333344432211 2357899
Q ss_pred eEEEeCCCCC
Q 021180 125 LLILTDPRTD 134 (316)
Q Consensus 125 llVV~DP~~d 134 (316)
+|+++..+-+
T Consensus 282 lvl~lG~~l~ 291 (585)
T PLN02470 282 LLLAFGVRFD 291 (585)
T ss_pred EEEEECCCCc
Confidence 9999997654
No 270
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.84 E-value=2.8e+02 Score=29.04 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCceecCCccCCccCCcc---------------cccccC
Q 021180 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNE 122 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~---------------~~~f~e 122 (316)
.+..++..|..-+++ ++++|.. ....+.+.+||+++|+..++.---.|.|-+-. ...+++
T Consensus 203 ~~~~~~~~L~~A~rP--vIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~ 280 (570)
T PRK06725 203 KLREVAKAISKAKRP--LLYIGGGVIHSGGSEELIEFARENRIPVVSTLMGLGAYPPGDPLFLGMLGMHGTYAANMAVTE 280 (570)
T ss_pred HHHHHHHHHHcCCCc--EEEECCCccccchHHHHHHHHHHhCCCEEECCccCcCCCCCChhhcCCCCCCCCHHHHHHHHh
Confidence 355566665544343 6666663 34678889999999997765422234433211 113578
Q ss_pred CceEEEeCCCCCc
Q 021180 123 PRLLILTDPRTDH 135 (316)
Q Consensus 123 P~llVV~DP~~d~ 135 (316)
.|+|+++..+-+.
T Consensus 281 aDlil~vG~~~~~ 293 (570)
T PRK06725 281 CDLLLALGVRFDD 293 (570)
T ss_pred CCEEEEeCCCCCc
Confidence 9999999977543
No 271
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=24.80 E-value=3.6e+02 Score=23.58 Aligned_cols=83 Identities=11% Similarity=0.162 Sum_probs=48.3
Q ss_pred HHHHh-hCCCcEEEEccCch-hHHHHHHHHHHcCCceecCCccCCccCCccc------ccccCCceEEEeC--CCCCchh
Q 021180 68 VIVAI-ENPGDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ------TSFNEPRLLILTD--PRTDHQP 137 (316)
Q Consensus 68 ~I~~I-~n~~~ILfVstr~~-~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~------~~f~eP~llVV~D--P~~d~qa 137 (316)
++... .++.+|.|+|+++. ..++..++.+...-.-|.|+.. |.|+.... ++-..||+|+|-- |+.+.-+
T Consensus 40 l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~-g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~ 118 (172)
T PF03808_consen 40 LLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHH-GYFDEEEEEAIINRINASGPDIVFVGLGAPKQERWI 118 (172)
T ss_pred HHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecC-CCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHH
Confidence 34444 46678999999874 3445545555443334666544 44421111 1237899998884 7666655
Q ss_pred HHHhhhcCCCEEEEe
Q 021180 138 IKEAALGNIPTIAFC 152 (316)
Q Consensus 138 I~EAs~lnIPtIAL~ 152 (316)
.+=...++.+ +.||
T Consensus 119 ~~~~~~l~~~-v~i~ 132 (172)
T PF03808_consen 119 ARHRQRLPAG-VIIG 132 (172)
T ss_pred HHHHHHCCCC-EEEE
Confidence 5555666666 5554
No 272
>PLN02347 GMP synthetase
Probab=24.80 E-value=1.9e+02 Score=30.56 Aligned_cols=73 Identities=10% Similarity=0.119 Sum_probs=37.9
Q ss_pred CcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCC----------CCchhHHHhhhcC
Q 021180 76 GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPR----------TDHQPIKEAALGN 145 (316)
Q Consensus 76 ~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~----------~d~qaI~EAs~ln 145 (316)
.+|++|....+....+.+.-+..|.+...-.|. ++.....-..|+.||+..-. .+...++.+...+
T Consensus 11 ~~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~----~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~ 86 (536)
T PLN02347 11 DVVLILDYGSQYTHLITRRVRELGVYSLLLSGT----ASLDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERG 86 (536)
T ss_pred CEEEEEECCCcHHHHHHHHHHHCCCeEEEEECC----CCHHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHHhcC
Confidence 457777776555555555555666654332222 12222111257777777511 1112334444558
Q ss_pred CCEEEEe
Q 021180 146 IPTIAFC 152 (316)
Q Consensus 146 IPtIAL~ 152 (316)
+|+.|||
T Consensus 87 iPILGIC 93 (536)
T PLN02347 87 VPVLGIC 93 (536)
T ss_pred CcEEEEC
Confidence 9999997
No 273
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=24.77 E-value=2.1e+02 Score=25.04 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=20.9
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCC--C----EEEEecC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNI--P----TIAFCDT 154 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnI--P----tIAL~DT 154 (316)
..|+.||+.+...-..+++.+...|+ | +|++-++
T Consensus 180 ~~~~ai~~~~d~~a~g~~~al~~~g~~vp~~i~iig~d~~ 219 (268)
T cd06271 180 DRPTAIVCSSELMALGVLAALAEAGLRPGRDVSVVGFDDS 219 (268)
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHhCCCCCcceeEEEecCc
Confidence 45899999875444455566666554 3 5655554
No 274
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=24.63 E-value=2.4e+02 Score=26.30 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=21.8
Q ss_pred ccCCceEEEeCCCCC-chhHHHhhhcCCCEEEE
Q 021180 120 FNEPRLLILTDPRTD-HQPIKEAALGNIPTIAF 151 (316)
Q Consensus 120 f~eP~llVV~DP~~d-~qaI~EAs~lnIPtIAL 151 (316)
++.-|++++..-... ...+-||..+|+|+|+-
T Consensus 300 ~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s 332 (398)
T cd03800 300 YRAADVFVNPALYEPFGLTALEAMACGLPVVAT 332 (398)
T ss_pred HHhCCEEEecccccccCcHHHHHHhcCCCEEEC
Confidence 466777766532211 24689999999999863
No 275
>PRK06154 hypothetical protein; Provisional
Probab=24.55 E-value=3e+02 Score=28.77 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCceecCCccCCccCCcc---------------cccccC
Q 021180 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM---------------QTSFNE 122 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~---------------~~~f~e 122 (316)
.+.+++.+|..-++| ++++|.. ....+.+++||+++|+..++.-.--|.|-.-. ...+++
T Consensus 203 ~i~~aa~~L~~A~rP--vil~G~g~~~~~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hpl~~G~~g~~~~~~~~~~~~~ 280 (565)
T PRK06154 203 EVVEAAALLLAAERP--VIYAGQGVLYAQATPELKELAELLEIPVMTTLNGKSAFPEDHPLALGSGGRARPATVAHFLRE 280 (565)
T ss_pred HHHHHHHHHHhCCCC--EEEECCCccccChHHHHHHHHHHhCCCEEECCCcccCCCCCCccccCCCCCCCcHHHHHHHHh
Confidence 356666666554443 5556652 35678899999999998776422223332110 113578
Q ss_pred CceEEEeCCCCC
Q 021180 123 PRLLILTDPRTD 134 (316)
Q Consensus 123 P~llVV~DP~~d 134 (316)
-|+|+++..+-+
T Consensus 281 aDlvL~lG~~l~ 292 (565)
T PRK06154 281 ADVLFGIGCSLT 292 (565)
T ss_pred CCEEEEECCCCc
Confidence 999999987655
No 276
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=24.44 E-value=1.6e+02 Score=25.92 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=23.9
Q ss_pred cCCceEEEeCCC-CCchhHHHhhhcCCCEEEEecCCC
Q 021180 121 NEPRLLILTDPR-TDHQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 121 ~eP~llVV~DP~-~d~qaI~EAs~lnIPtIAL~DTds 156 (316)
+..|.||++... .+...++++...+||+|.+ |++.
T Consensus 55 ~~vdgiii~~~~~~~~~~~~~~~~~~ipvv~i-~~~~ 90 (270)
T cd01545 55 SRVDGVILTPPLSDNPELLDLLDEAGVPYVRI-APGT 90 (270)
T ss_pred CCCCEEEEeCCCCCccHHHHHHHhcCCCEEEE-ecCC
Confidence 346777776443 2445678888899999987 4443
No 277
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=24.44 E-value=3.4e+02 Score=23.81 Aligned_cols=83 Identities=13% Similarity=0.198 Sum_probs=49.1
Q ss_pred HHHHHHh-hCCCcEEEEccCch-hHHHHHHHHHHcCCceecCCccCCccCCcc------cccccCCceEEEe--CCCCCc
Q 021180 66 ARVIVAI-ENPGDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQM------QTSFNEPRLLILT--DPRTDH 135 (316)
Q Consensus 66 a~~I~~I-~n~~~ILfVstr~~-~q~aV~kfA~~tGa~~I~grw~pGtLTN~~------~~~f~eP~llVV~--DP~~d~ 135 (316)
-.++... +++.+|.|+|+++. ..+++.++.+.-...-|.|.. .|-|-.-. .++-..||+|+|- -|+.+.
T Consensus 36 ~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~-~g~~~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~ 114 (171)
T cd06533 36 PALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYH-HGYFGPEEEEEIIERINASGADILFVGLGAPKQEL 114 (171)
T ss_pred HHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEec-CCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHH
Confidence 3444544 56789999999875 556666666654444455532 33332211 1223689999987 477776
Q ss_pred hhHHHhhhcCCCEE
Q 021180 136 QPIKEAALGNIPTI 149 (316)
Q Consensus 136 qaI~EAs~lnIPtI 149 (316)
-+-+=..+++.+++
T Consensus 115 ~~~~~~~~l~~~v~ 128 (171)
T cd06533 115 WIARHKDRLPVPVA 128 (171)
T ss_pred HHHHHHHHCCCCEE
Confidence 66555555555543
No 278
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.29 E-value=6.4e+02 Score=24.17 Aligned_cols=73 Identities=19% Similarity=0.147 Sum_probs=44.8
Q ss_pred CCcEEEEccC-chhH---HHHHHHHHHcCCceecCCccCCccCCccc----ccccCCceEEEeCCCCC-chhHHHhhhcC
Q 021180 75 PGDIIVQSAR-PYGQ---RAVLKFAKYTHAHAIAGRHTPGTFTNQMQ----TSFNEPRLLILTDPRTD-HQPIKEAALGN 145 (316)
Q Consensus 75 ~~~ILfVstr-~~~q---~aV~kfA~~tGa~~I~grw~pGtLTN~~~----~~f~eP~llVV~DP~~d-~qaI~EAs~ln 145 (316)
.++|-+|... .+++ +.+++.++..|...+..-+.+-.-|++.. .+-..||+|++.....+ ...++++...|
T Consensus 140 ~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~~~~~~~~~~~~~~~~~G 219 (351)
T cd06334 140 GKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGVMNPVAIKEAKRVG 219 (351)
T ss_pred CCeEEEEeCCCccchhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEecccchHHHHHHHHHHcC
Confidence 5677666554 3444 34455666677776665555533344432 23468999988865444 55678888887
Q ss_pred CC
Q 021180 146 IP 147 (316)
Q Consensus 146 IP 147 (316)
..
T Consensus 220 ~~ 221 (351)
T cd06334 220 LD 221 (351)
T ss_pred CC
Confidence 74
No 279
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=24.21 E-value=88 Score=27.00 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=25.9
Q ss_pred cCCceEEEeCCCCCch---hHHHhhhc-CCCEEEEecCCC
Q 021180 121 NEPRLLILTDPRTDHQ---PIKEAALG-NIPTIAFCDTDS 156 (316)
Q Consensus 121 ~eP~llVV~DP~~d~q---aI~EAs~l-nIPtIAL~DTds 156 (316)
..||+||.|-|....- .+++-..+ ++|+++++ ||-
T Consensus 88 ~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvv-TD~ 126 (169)
T PF06925_consen 88 FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVV-TDF 126 (169)
T ss_pred cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEE-cCC
Confidence 6899999999976544 25666667 79988776 344
No 280
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=24.17 E-value=2.3e+02 Score=32.01 Aligned_cols=8 Identities=25% Similarity=0.368 Sum_probs=3.8
Q ss_pred cCCCCCCc
Q 021180 153 DTDSPMRY 160 (316)
Q Consensus 153 DTds~~~~ 160 (316)
||.+.+-+
T Consensus 397 dT~aE~yf 404 (1102)
T KOG1924|consen 397 DTGAEPYF 404 (1102)
T ss_pred hccccchH
Confidence 45554443
No 281
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=24.09 E-value=2.1e+02 Score=25.15 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=19.5
Q ss_pred CceEEEeCCCCCchhHHHhhhcCCC------EEEEecC
Q 021180 123 PRLLILTDPRTDHQPIKEAALGNIP------TIAFCDT 154 (316)
Q Consensus 123 P~llVV~DP~~d~qaI~EAs~lnIP------tIAL~DT 154 (316)
|+.|++.+...-.-+++.+...|+. +|++-|+
T Consensus 178 ~~ai~~~~d~~a~~~~~~l~~~g~~vp~di~vvg~d~~ 215 (268)
T cd06298 178 PTAAFVTDDELAIGILNAAQDAGLKVPEDFEIIGFNNT 215 (268)
T ss_pred CCEEEEcCcHHHHHHHHHHHHcCCCCccceEEEeeccH
Confidence 8999987655434455665555543 5666544
No 282
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=23.88 E-value=2.9e+02 Score=25.30 Aligned_cols=120 Identities=9% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHh-hCCCcEEEEccCc------hhHHHHHHHHHHcCCceecCCccCCccCCcccc------cccCCceEEEe
Q 021180 63 QMAARVIVAI-ENPGDIIVQSARP------YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT------SFNEPRLLILT 129 (316)
Q Consensus 63 ~~Aa~~I~~I-~n~~~ILfVstr~------~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~------~f~eP~llVV~ 129 (316)
..+++.+... ..+.+++++++.. ...+..++.++..|.......+....++...+. ....|+.|++.
T Consensus 135 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~R~~gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 214 (295)
T PRK10653 135 KMAGDFIAKKLGEGAKVIQLEGIAGTSAARERGEGFKQAVAAHKFNVLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQ 214 (295)
T ss_pred HHHHHHHHHHhCCCceEEEEEccCCCccHHHHHHHHHHHHhhCCCEEEEecCCCCCHHHHHHHHHHHHHhCCCcCEEEEC
Q ss_pred CCCCCchhHHHhhhcC---CCEEEEecCC------CCCCc-ceEEecCCCCCchhHHHHHHHH
Q 021180 130 DPRTDHQPIKEAALGN---IPTIAFCDTD------SPMRY-VDIGIPANNKGKHSIGCLFWLL 182 (316)
Q Consensus 130 DP~~d~qaI~EAs~ln---IPtIAL~DTd------s~~~~-VD~pIP~NndS~~SI~Li~~lL 182 (316)
+-..-.-+++++...| +.+|++-|++ .++.. .++-.|.-.-+..++.++..+|
T Consensus 215 ~d~~A~g~l~al~~~G~~dv~vig~d~~~~~~~~~~~~~~~tti~~~~~~~g~~a~~~l~~~l 277 (295)
T PRK10653 215 NDEMALGALRALQTAGKSDVMVVGFDGTPDGIKAVNRGKLAATIAQQPDQIGAIGVETADKVL 277 (295)
T ss_pred CChhHHHHHHHHHHcCCCceEEEEeCCCHHHHHHHHcCCceEEeecCHHHHHHHHHHHHHHHh
No 283
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=23.82 E-value=7.6e+02 Score=25.80 Aligned_cols=93 Identities=25% Similarity=0.267 Sum_probs=54.5
Q ss_pred HHHHHHHHHHH-HhhCCCcEEEEccCc-h---hHHHHHHHHHHcCC---ceecCCccC--CccCCcccccc--cCCceEE
Q 021180 60 EKLQMAARVIV-AIENPGDIIVQSARP-Y---GQRAVLKFAKYTHA---HAIAGRHTP--GTFTNQMQTSF--NEPRLLI 127 (316)
Q Consensus 60 ekL~~Aa~~I~-~I~n~~~ILfVstr~-~---~q~aV~kfA~~tGa---~~I~grw~p--GtLTN~~~~~f--~eP~llV 127 (316)
..+.+|+..|. .|++..+|++++-.. . +.-++.++.++.|. +++..|+.. |...+.+. .+ ..+++||
T Consensus 38 ~~~~~a~~~i~~~i~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~~ip~r~~~~yg~~~~~i~-~~~~~~~~LiI 116 (539)
T TIGR00644 38 KDMEKAVERIIEAIENNEKILIFGDYDVDGITSTAILVEFLKDLGVNVDYYIPNRITEGYGLSPEALR-EAIENGVSLII 116 (539)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEEccCCCcHHHHHHHHHHHHHCCCceEEEeCCCCcccCCCCHHHHH-HHHhcCCCEEE
Confidence 34556666655 467888998887642 1 23344455566664 345455544 32222111 12 3579999
Q ss_pred EeCCCCC-chhHHHhhhcCCCEEEEecC
Q 021180 128 LTDPRTD-HQPIKEAALGNIPTIAFCDT 154 (316)
Q Consensus 128 V~DP~~d-~qaI~EAs~lnIPtIAL~DT 154 (316)
++|.... +..+..+...++.+|- +|-
T Consensus 117 ~vD~G~~~~~~~~~~~~~g~~vIv-iDH 143 (539)
T TIGR00644 117 TVDNGISAHEEIDYAKELGIDVIV-TDH 143 (539)
T ss_pred EeCCCcccHHHHHHHHhcCCCEEE-ECC
Confidence 9996554 5567677777888765 454
No 284
>PRK06490 glutamine amidotransferase; Provisional
Probab=23.81 E-value=3.6e+02 Score=25.09 Aligned_cols=73 Identities=8% Similarity=0.034 Sum_probs=40.7
Q ss_pred CcEEEE-ccCchhHHHHHHHHHHcCCceecCCc-cCCccCCcccccccCCceEEEeCCC----CC-------chhHHHhh
Q 021180 76 GDIIVQ-SARPYGQRAVLKFAKYTHAHAIAGRH-TPGTFTNQMQTSFNEPRLLILTDPR----TD-------HQPIKEAA 142 (316)
Q Consensus 76 ~~ILfV-str~~~q~aV~kfA~~tGa~~I~grw-~pGtLTN~~~~~f~eP~llVV~DP~----~d-------~qaI~EAs 142 (316)
.+|+|| ......-..+.++.+..|..+..-+- .++.+- ..+...|.|||+.-. .+ ...|+++.
T Consensus 8 ~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p----~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~ 83 (239)
T PRK06490 8 RPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLP----DTLEDHAGAVIFGGPMSANDPDDFIRREIDWISVPL 83 (239)
T ss_pred ceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCC----CcccccCEEEEECCCCCCCCCchHHHHHHHHHHHHH
Confidence 456665 44434444556666666665433232 222221 123446778887421 11 35567788
Q ss_pred hcCCCEEEEe
Q 021180 143 LGNIPTIAFC 152 (316)
Q Consensus 143 ~lnIPtIAL~ 152 (316)
..++|++|+|
T Consensus 84 ~~~~PvLGIC 93 (239)
T PRK06490 84 KENKPFLGIC 93 (239)
T ss_pred HCCCCEEEEC
Confidence 8899999998
No 285
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=23.66 E-value=6e+02 Score=23.65 Aligned_cols=83 Identities=8% Similarity=0.015 Sum_probs=46.2
Q ss_pred HHHHHHHHhh-CCCcEEEEccC-chhH---HHHHHHHHHc--CCceecCCccCCccCCccc----ccccCCceEEEeC-C
Q 021180 64 MAARVIVAIE-NPGDIIVQSAR-PYGQ---RAVLKFAKYT--HAHAIAGRHTPGTFTNQMQ----TSFNEPRLLILTD-P 131 (316)
Q Consensus 64 ~Aa~~I~~I~-n~~~ILfVstr-~~~q---~aV~kfA~~t--Ga~~I~grw~pGtLTN~~~----~~f~eP~llVV~D-P 131 (316)
....++.... +.++|.++... .+++ +.+++.+++. |...+...+.+..-+++.. ..-..||.||+.. +
T Consensus 126 ~~~~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~~v~~i~~~~~d~ii~~~~~ 205 (346)
T cd06330 126 AGALYAAKLDKKAKTWATINPDYAYGQDAWADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAAKPDAIFSSLWG 205 (346)
T ss_pred HHHHHHHHhCcCccEEEEECCchHHHHHHHHHHHHHHHHhCCCCeecccccCCCCCcccHHHHHHHHhcCCCEEEEeccc
Confidence 3344444432 34678777665 3443 3444555555 3445555565533444432 1236799998875 3
Q ss_pred CCCchhHHHhhhcCC
Q 021180 132 RTDHQPIKEAALGNI 146 (316)
Q Consensus 132 ~~d~qaI~EAs~lnI 146 (316)
..-...++++...++
T Consensus 206 ~~~~~~~~~~~~~g~ 220 (346)
T cd06330 206 GDLVTFVRQANARGL 220 (346)
T ss_pred ccHHHHHHHHHhcCc
Confidence 344557789988776
No 286
>PRK07586 hypothetical protein; Validated
Probab=23.56 E-value=2.2e+02 Score=29.05 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcc---CchhHHHHHHHHHHcCCceecCCc------cCCccCC--------cccccccCC
Q 021180 61 KLQMAARVIVAIENPGDIIVQSA---RPYGQRAVLKFAKYTHAHAIAGRH------TPGTFTN--------QMQTSFNEP 123 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVst---r~~~q~aV~kfA~~tGa~~I~grw------~pGtLTN--------~~~~~f~eP 123 (316)
.+.+++..|.+-++ -++++|. +......+.+||+++|+..++.-+ --|.|-. .....+++.
T Consensus 186 ~v~~~~~~L~~A~r--Pvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~a 263 (514)
T PRK07586 186 AVEAAAAALRSGEP--TVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGV 263 (514)
T ss_pred HHHHHHHHHHhcCC--CEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcC
Confidence 45556666655433 4666665 345678899999999998765322 1133321 111236889
Q ss_pred ceEEEeCCC
Q 021180 124 RLLILTDPR 132 (316)
Q Consensus 124 ~llVV~DP~ 132 (316)
|+|+++..+
T Consensus 264 Dlvl~vG~~ 272 (514)
T PRK07586 264 RHLVLVGAK 272 (514)
T ss_pred CEEEEECCC
Confidence 999999976
No 287
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=23.55 E-value=98 Score=27.68 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=26.0
Q ss_pred CCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEE
Q 021180 113 TNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 113 TN~~~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL 151 (316)
.|.....--.||+||......+...+..-..++||++.+
T Consensus 49 ~n~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~ 87 (235)
T cd01149 49 LSAEGVLSLKPTLVIASDEAGPPEALDQLRAAGVPVVTV 87 (235)
T ss_pred cCHHHhhccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEe
Confidence 355455456899998765433334555667889999866
No 288
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=23.24 E-value=1.3e+02 Score=26.74 Aligned_cols=41 Identities=10% Similarity=0.077 Sum_probs=24.8
Q ss_pred CCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCCCCcceE
Q 021180 122 EPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPMRYVDI 163 (316)
Q Consensus 122 eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~~~~VD~ 163 (316)
.+|.||+.....+ ...++++...+||+|.+ |+..+...+.+
T Consensus 57 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~ 99 (275)
T cd06320 57 GYKGLLFSPISDVNLVPAVERAKKKGIPVVNV-NDKLIPNATAF 99 (275)
T ss_pred CCCEEEECCCChHHhHHHHHHHHHCCCeEEEE-CCCCCCccceE
Confidence 4677766532212 34678888899999965 65443333344
No 289
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.09 E-value=2.7e+02 Score=24.79 Aligned_cols=43 Identities=9% Similarity=-0.044 Sum_probs=27.9
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEec
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP 166 (316)
+..|-+|+. + .+...+.+....++|+|.+ |...+...+++...
T Consensus 49 ~~vdGiI~~-~-~~~~~~~~l~~~~~PvV~~-~~~~~~~~~~~v~~ 91 (265)
T cd01543 49 WQGDGIIAR-I-DDPEMAEALQKLGIPVVDV-SGSREKPGIPRVTT 91 (265)
T ss_pred cccceEEEE-C-CCHHHHHHHhhCCCCEEEE-eCccCCCCCCEEee
Confidence 467888876 3 2445667878889999887 65544344555443
No 290
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=23.01 E-value=2.7e+02 Score=27.86 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=39.8
Q ss_pred CcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeC----CCCC---chhHHHhhhcCCCE
Q 021180 76 GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD----PRTD---HQPIKEAALGNIPT 148 (316)
Q Consensus 76 ~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D----P~~d---~qaI~EAs~lnIPt 148 (316)
.+|+++... .+.-+.+.-.+.|+..+.=++.. ......-..||.||+.+ |..+ ...++++...++|+
T Consensus 178 ~~I~viD~G--~k~nivr~L~~~G~~v~vvp~~~----~~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~Pi 251 (360)
T PRK12564 178 YKVVAIDFG--VKRNILRELAERGCRVTVVPATT----TAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPI 251 (360)
T ss_pred CEEEEEeCC--cHHHHHHHHHHCCCEEEEEeCCC----CHHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeE
Confidence 357776654 23334455555676654333321 11111112588888875 2221 34677887789999
Q ss_pred EEEe
Q 021180 149 IAFC 152 (316)
Q Consensus 149 IAL~ 152 (316)
.|+|
T Consensus 252 lGIC 255 (360)
T PRK12564 252 FGIC 255 (360)
T ss_pred EEEC
Confidence 9998
No 291
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=22.98 E-value=3.3e+02 Score=23.81 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=21.2
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDT 154 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DT 154 (316)
+.+|.||+..+..+.. +.++...+||+|.+.+.
T Consensus 54 ~~vdgiii~~~~~~~~-~~~~~~~~ipvv~~~~~ 86 (267)
T cd06284 54 KQADGIILLDGSLPPT-ALTALAKLPPIVQACEY 86 (267)
T ss_pred cCCCEEEEecCCCCHH-HHHHHhcCCCEEEEecc
Confidence 4678888876544433 33444569999977543
No 292
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=22.95 E-value=2.5e+02 Score=23.67 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=23.4
Q ss_pred CCceEEEeCCCCCch-hHHHhhhcCCCEEEEecCC
Q 021180 122 EPRLLILTDPRTDHQ-PIKEAALGNIPTIAFCDTD 155 (316)
Q Consensus 122 eP~llVV~DP~~d~q-aI~EAs~lnIPtIAL~DTd 155 (316)
.++.||+.....+.. ++..+...|||+|.+--+.
T Consensus 58 ~~d~ii~~~~~~~~~~~~~~~~~~~ip~v~~~~~~ 92 (269)
T cd01391 58 GVDGIIGPPSSSSALAVVELAAAAGIPVVSLDATA 92 (269)
T ss_pred CCCEEEecCCCHHHHHHHHHHHHcCCcEEEecCCC
Confidence 467777665544433 6788888999999985443
No 293
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=22.72 E-value=2.6e+02 Score=28.05 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=38.8
Q ss_pred cEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC-------chhHHHhhhcCCCEE
Q 021180 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD-------HQPIKEAALGNIPTI 149 (316)
Q Consensus 77 ~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d-------~qaI~EAs~lnIPtI 149 (316)
+|+++... .+.-+.++....|+..+.-.|.. + .....-..||.||+.+-..| ...++++.. ++|+.
T Consensus 175 ~i~viD~G--~k~ni~~~L~~~G~~v~vvp~~~---~-~~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~-~~PIL 247 (358)
T TIGR01368 175 RVVVIDFG--VKQNILRRLVKRGCEVTVVPYDT---D-AEEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLE-KIPIF 247 (358)
T ss_pred EEEEEeCC--cHHHHHHHHHHCCCEEEEEcCCC---C-HHHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHc-CCCEE
Confidence 57776653 22345555555677654433321 1 11111135799988753222 235677776 99999
Q ss_pred EEec
Q 021180 150 AFCD 153 (316)
Q Consensus 150 AL~D 153 (316)
|||=
T Consensus 248 GICl 251 (358)
T TIGR01368 248 GICL 251 (358)
T ss_pred EECH
Confidence 9983
No 294
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=22.67 E-value=3e+02 Score=26.23 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=23.2
Q ss_pred ccCCceEEEeCCCCC-chhHHHhhhcCCCEEEE
Q 021180 120 FNEPRLLILTDPRTD-HQPIKEAALGNIPTIAF 151 (316)
Q Consensus 120 f~eP~llVV~DP~~d-~qaI~EAs~lnIPtIAL 151 (316)
++.-|++|+..-.+. ...+.||..+|+|+|+.
T Consensus 300 l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~ 332 (405)
T TIGR03449 300 YRAADVVAVPSYNESFGLVAMEAQACGTPVVAA 332 (405)
T ss_pred HHhCCEEEECCCCCCcChHHHHHHHcCCCEEEe
Confidence 566787777642221 45799999999999984
No 295
>PF01646 Herpes_UL24: Herpes virus protein UL24; InterPro: IPR002580 This entry consists of the human herpes virus protein UL24 and its orthologues, which are universally present in avian, mammalian and reptilian herpes viruses. Though the functions of these proteins are not known, computational analysis suggests that they may belong to the restriction endonuclease-like fold superfamily, which contains a variety of endonucleases, DNA repair enzymes and exonucleases []. Proteins in this entry contain an absolutely conserved PD-(D/E)XK motif thought to be critical for nucleotide-cleaving activity.
Probab=22.56 E-value=1.5e+02 Score=27.11 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhcCCC-CCCCccceeecccccC
Q 021180 179 FWLLARMVLQMRGTIR-PGHKWDVMVDLFFYRE 210 (316)
Q Consensus 179 ~~lLaraVl~~rG~i~-~~~~w~v~~dl~fyrd 210 (316)
+.-|...+...+.... ....|.|.|-|.|++-
T Consensus 108 l~QLrDs~~~l~~~~p~G~~~~~v~P~LvF~~Q 140 (179)
T PF01646_consen 108 LRQLRDSVRLLRNLAPPGGEPWSVCPVLVFVSQ 140 (179)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEEEEEEEEc
Confidence 3446666666665444 4559999999999873
No 296
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=22.54 E-value=3.5e+02 Score=25.67 Aligned_cols=78 Identities=15% Similarity=0.104 Sum_probs=44.2
Q ss_pred HhhCCCcEEEEccCchhHHHHHHHHHHcCCc-eecCCccCCccCCc---ccccccCCceEEEeCCCCC-chhHHHhhhcC
Q 021180 71 AIENPGDIIVQSARPYGQRAVLKFAKYTHAH-AIAGRHTPGTFTNQ---MQTSFNEPRLLILTDPRTD-HQPIKEAALGN 145 (316)
Q Consensus 71 ~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~-~I~grw~pGtLTN~---~~~~f~eP~llVV~DP~~d-~qaI~EAs~ln 145 (316)
.+..+-+++++|..+... -+++.++..|.. .| +|+ |..+|. ....+..-|++|+..-.+. ...+-||..+|
T Consensus 206 ~~~~~~~l~ivG~g~~~~-~l~~~~~~~~l~~~v--~f~-G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G 281 (359)
T PRK09922 206 QTTGEWQLHIIGDGSDFE-KCKAYSRELGIEQRI--IWH-GWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYG 281 (359)
T ss_pred hhCCCeEEEEEeCCccHH-HHHHHHHHcCCCCeE--EEe-cccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcC
Confidence 333345788888876544 345666655432 11 233 433442 1122345566666543211 56788999999
Q ss_pred CCEEEEec
Q 021180 146 IPTIAFCD 153 (316)
Q Consensus 146 IPtIAL~D 153 (316)
+|+|+. |
T Consensus 282 ~Pvv~s-~ 288 (359)
T PRK09922 282 IPCISS-D 288 (359)
T ss_pred CCEEEe-C
Confidence 999984 5
No 297
>PRK13816 ribosome-binding factor A; Provisional
Probab=22.49 E-value=1.3e+02 Score=25.89 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=44.5
Q ss_pred CCEEEEecCCCCCCcce--EEecCCC----CCchhHHHHHHHHHHHHHHhhcCCCCCCCccceeecccccCcc
Q 021180 146 IPTIAFCDTDSPMRYVD--IGIPANN----KGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPE 212 (316)
Q Consensus 146 IPtIAL~DTds~~~~VD--~pIP~Nn----dS~~SI~Li~~lLaraVl~~rG~i~~~~~w~v~~dl~fyrdpe 212 (316)
.-||.=|+...++++.. |-+-+.. .......-++..|-++--..|..+.+.--|..+|+|-|+.|..
T Consensus 32 ~vtVT~V~vS~DL~~AkVyvs~lg~~~~~~~~~~~~~~~l~~L~~a~g~iR~~L~krl~lR~~PeL~F~~D~s 104 (131)
T PRK13816 32 LVTISSVKVSPDLGYADVYVTVMGRELSDDQNEVAHRETLDVLNKASGFLRTELSRRIKTRITPRLRFHYDKT 104 (131)
T ss_pred ceEEeEEEECCCCCeEEEEEEecCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcCCeECCEEEEEECCC
Confidence 34666677777777644 3334431 1233444455667777777777777667799999999999876
No 298
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=22.47 E-value=6.4e+02 Score=23.52 Aligned_cols=97 Identities=16% Similarity=0.109 Sum_probs=54.7
Q ss_pred hCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccC-CccCCcccccccCCceEEEeCCCCC----chhHHHhhhcCCC
Q 021180 73 ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTP-GTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIP 147 (316)
Q Consensus 73 ~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~p-GtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIP 147 (316)
+..|+|+|.|-.+.+. +-+|||.+.-++=..-.|++ +-.-.-..-.+..=|+||.+.-.-+ ..++.=|+..+++
T Consensus 37 ~~~gkv~V~G~GkSG~-Igkk~Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~ 115 (202)
T COG0794 37 ECKGKVFVTGVGKSGL-IGKKFAARLASTGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAK 115 (202)
T ss_pred hcCCcEEEEcCChhHH-HHHHHHHHHHccCCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCc
Confidence 3578899998876654 66788887432211111222 1000111122344577777753333 3466778899999
Q ss_pred EEEEe-cCCCCCC---cceEEecCCCC
Q 021180 148 TIAFC-DTDSPMR---YVDIGIPANNK 170 (316)
Q Consensus 148 tIAL~-DTds~~~---~VD~pIP~Nnd 170 (316)
+|++. +-||++- -+.+.||.-.+
T Consensus 116 liaiT~~~~SsLak~aDvvl~ip~~~e 142 (202)
T COG0794 116 LIAITSNPDSSLAKAADVVLVIPVKTE 142 (202)
T ss_pred EEEEeCCCCChHHHhcCeEEEccCccc
Confidence 99997 3355432 35666766444
No 299
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=22.32 E-value=2.8e+02 Score=24.22 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=16.8
Q ss_pred chhHHHhhhcCCCEEEEecC
Q 021180 135 HQPIKEAALGNIPTIAFCDT 154 (316)
Q Consensus 135 ~qaI~EAs~lnIPtIAL~DT 154 (316)
...++++...++|+.|+|--
T Consensus 59 ~~~~~~~~~~~~PvlGIC~G 78 (178)
T cd01744 59 IKTVRKLLGKKIPIFGICLG 78 (178)
T ss_pred HHHHHHHHhCCCCEEEECHH
Confidence 46788999999999999853
No 300
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=22.23 E-value=3.3e+02 Score=23.14 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=49.5
Q ss_pred HHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCCchhHHHh-h
Q 021180 65 AARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEA-A 142 (316)
Q Consensus 65 Aa~~I~~I-~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d~qaI~EA-s 142 (316)
+..+|..+ +++-.+.+||++. ...+....+..|...+.+..+ .++ ...+..|+-.+...+.....+++.. .
T Consensus 85 ~~e~l~~l~~~g~~~~IvS~~~--~~~~~~~l~~~g~~~~~~~~~---~~~--~~g~~~p~~~~~~~~~~k~~~~~~~~~ 157 (201)
T TIGR01491 85 AEELVRWLKEKGLKTAIVSGGI--MCLAKKVAEKLNPDYVYSNEL---VFD--EKGFIQPDGIVRVTFDNKGEAVERLKR 157 (201)
T ss_pred HHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHHHhCCCeEEEEEE---EEc--CCCeEecceeeEEccccHHHHHHHHHH
Confidence 45566666 4555777777764 345566667777543211110 010 0112224433223332222344443 4
Q ss_pred hcCCC---EEEEecCCCCCC---cceEEecCCCCC
Q 021180 143 LGNIP---TIAFCDTDSPMR---YVDIGIPANNKG 171 (316)
Q Consensus 143 ~lnIP---tIAL~DTds~~~---~VD~pIP~NndS 171 (316)
++|++ ++.+-|+.++.. .+++++-.|.+.
T Consensus 158 ~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~ 192 (201)
T TIGR01491 158 ELNPSLTETVAVGDSKNDLPMFEVADISISLGDEG 192 (201)
T ss_pred HhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCc
Confidence 45663 788888876644 466666666544
No 301
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=22.19 E-value=8.9e+02 Score=26.30 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=49.1
Q ss_pred CCcEEEEccC---chhHHHHHHHHHHcCCceecCC-----ccCCc----cCCcccccccCCceEEEe--CCCCCch----
Q 021180 75 PGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGR-----HTPGT----FTNQMQTSFNEPRLLILT--DPRTDHQ---- 136 (316)
Q Consensus 75 ~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~gr-----w~pGt----LTN~~~~~f~eP~llVV~--DP~~d~q---- 136 (316)
+..|.++.+. .....++++|++..|...+..+ +..+. +-|.....+..-|+|+++ ||+.++-
T Consensus 305 ~~~ia~i~g~~~~~E~~~~lkkl~~~lGs~nid~~~~~~~~~~~~~~~~~~~~si~dIe~AD~IlliG~Np~~eaPvl~~ 384 (687)
T PRK09130 305 GEKIAAIAGDLADVESMFALKDLMQKLGSSNLDCRQDGAKLDPSLRASYLFNTTIAGIEEADAILLIGANPRFEAPVLNA 384 (687)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHcCCCccccccchhhhhhhhhccCCCCCCHHHHHhCCEEEEEccCcccccHHHHH
Confidence 5567766554 2455688899999887554322 11110 111111124677888887 5666653
Q ss_pred hHHHhhhcCCCEEEEecCCCCCCc
Q 021180 137 PIKEAALGNIPTIAFCDTDSPMRY 160 (316)
Q Consensus 137 aI~EAs~lnIPtIAL~DTds~~~~ 160 (316)
-|+++.+-|---|.++|...++.+
T Consensus 385 rirka~~~g~~kIivIdpr~~~t~ 408 (687)
T PRK09130 385 RIRKRWRAGGFKIAVIGEQADLTY 408 (687)
T ss_pred HHHHHHHcCCCeEEEEcCccccCc
Confidence 246777666435557787766543
No 302
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=22.14 E-value=3.1e+02 Score=27.83 Aligned_cols=98 Identities=19% Similarity=0.259 Sum_probs=64.2
Q ss_pred hhCCCcEEEEccCchhHHHHHHHHHHcCC--ceecCCccCCccCCcc-ccc--ccCCceEEEeCCC------CCchhH-H
Q 021180 72 IENPGDIIVQSARPYGQRAVLKFAKYTHA--HAIAGRHTPGTFTNQM-QTS--FNEPRLLILTDPR------TDHQPI-K 139 (316)
Q Consensus 72 I~n~~~ILfVstr~~~q~aV~kfA~~tGa--~~I~grw~pGtLTN~~-~~~--f~eP~llVV~DP~------~d~qaI-~ 139 (316)
++.+.+||++++...++|++ ..+++.|+ .+|.-.| |+..+-+. +.+ -..|.+++|+.-. .|..++ .
T Consensus 89 lePgd~vLv~~~G~wg~ra~-D~~~r~ga~V~~v~~~~-G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g 166 (385)
T KOG2862|consen 89 LEPGDNVLVVSTGTWGQRAA-DCARRYGAEVDVVEADI-GQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISG 166 (385)
T ss_pred cCCCCeEEEEEechHHHHHH-HHHHhhCceeeEEecCc-ccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHH
Confidence 36677789999999999998 47888886 4564444 33333221 222 2689999998522 222233 3
Q ss_pred HhhhcCCCEEEEecCCCCCCc---------ceEEecCCCCCc
Q 021180 140 EAALGNIPTIAFCDTDSPMRY---------VDIGIPANNKGK 172 (316)
Q Consensus 140 EAs~lnIPtIAL~DTds~~~~---------VD~pIP~NndS~ 172 (316)
|..+ .-+..=|+||=+++.. ||++.-+..|..
T Consensus 167 ~lc~-k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL 207 (385)
T KOG2862|consen 167 ELCH-KHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKAL 207 (385)
T ss_pred HHhh-cCCeEEEEechhhcCCccceehhhcccEEEecchhhc
Confidence 4444 7889999999888764 888877766543
No 303
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=22.13 E-value=3.9e+02 Score=22.89 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=23.0
Q ss_pred cCCceEEEeCCCCCch-hHHHhhhcCCCEEEEe
Q 021180 121 NEPRLLILTDPRTDHQ-PIKEAALGNIPTIAFC 152 (316)
Q Consensus 121 ~eP~llVV~DP~~d~q-aI~EAs~lnIPtIAL~ 152 (316)
+.+|.||+.....+.. .+.++...++|+|.+-
T Consensus 54 ~~~d~ii~~~~~~~~~~~~~~l~~~~ip~v~~~ 86 (264)
T cd01537 54 RGVDGIIIAPSDLTAPTIVKLARKAGIPVVLVD 86 (264)
T ss_pred cCCCEEEEecCCCcchhHHHHhhhcCCCEEEec
Confidence 3678888776444333 3788888999999873
No 304
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=22.06 E-value=3.6e+02 Score=29.26 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=74.0
Q ss_pred cceeeecCCccccC--HHHHHHHHHHHHHHHHHhhCCCcEEEEcc---CchhHHHHHHHHHHcCCceecCCccCCccCCc
Q 021180 41 YVFKRRNDGIYIIN--LGKTWEKLQMAARVIVAIENPGDIIVQSA---RPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ 115 (316)
Q Consensus 41 YIyg~R~dGi~IIN--L~kT~ekL~~Aa~~I~~I~n~~~ILfVst---r~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~ 115 (316)
++|..-+ |..-|+ +-.+|-++.++ -|+.+|.+-. +.....-+...|++-|.-+--=||.|=.=+-.
T Consensus 431 vVf~c~~-n~~K~~pev~~~wmqIL~~--------vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~ 501 (620)
T COG3914 431 VVFCCFN-NYFKITPEVFALWMQILSA--------VPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNED 501 (620)
T ss_pred EEEEecC-CcccCCHHHHHHHHHHHHh--------CCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHH
Confidence 7777765 444454 44455544332 3666666444 46677778889999998876667877554444
Q ss_pred ccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEe
Q 021180 116 MQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFC 152 (316)
Q Consensus 116 ~~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~ 152 (316)
...++..-|++.=|=|-.-|.-.-|+..+|+|++..+
T Consensus 502 h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~ 538 (620)
T COG3914 502 HRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRV 538 (620)
T ss_pred HHHhhchhheeeecccCCCccchHHHHHhcCceeeec
Confidence 4456788898887779999999999999999999885
No 305
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.96 E-value=2.7e+02 Score=28.40 Aligned_cols=63 Identities=21% Similarity=0.168 Sum_probs=37.1
Q ss_pred ccCCceEEEeC-CCCCchhHHHhhhcCCCEEEEecCCCCC--CcceEEecCCCCCchhHH-HHHHHHH
Q 021180 120 FNEPRLLILTD-PRTDHQPIKEAALGNIPTIAFCDTDSPM--RYVDIGIPANNKGKHSIG-CLFWLLA 183 (316)
Q Consensus 120 f~eP~llVV~D-P~~d~qaI~EAs~lnIPtIAL~DTds~~--~~VD~pIP~NndS~~SI~-Li~~lLa 183 (316)
+...|+||+.- -..++..+++|...|||+++=.+-=... ..--+.|-|- +++.+.. |+..+|.
T Consensus 61 ~~~~d~vV~SPgI~~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGT-nGKTTTt~ll~~iL~ 127 (454)
T PRK01368 61 WQNLDKIVLSPGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGT-NGKSTTTALISHILN 127 (454)
T ss_pred hhCCCEEEECCCCCCCCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECC-CcHHHHHHHHHHHHH
Confidence 44678766654 2356788999999999998643321000 1125788886 4555544 4444443
No 306
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=21.72 E-value=9.5e+02 Score=25.23 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=67.5
Q ss_pred CCCcEEEEccCch---hHHHHHHHHHHcCC---ceecCCccCCccCCcccccccCCceEEEeCCCCC-----chhHHHhh
Q 021180 74 NPGDIIVQSARPY---GQRAVLKFAKYTHA---HAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD-----HQPIKEAA 142 (316)
Q Consensus 74 n~~~ILfVstr~~---~q~aV~kfA~~tGa---~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d-----~qaI~EAs 142 (316)
+..++.|+|+... ..+.-+|+-+.+.. .|-.+.|..|.+-=. .+=..+|++.+..+ ...++|..
T Consensus 462 ~~~~~~~lG~G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i-----~~~~~vi~l~~~~~~~~~~~~~~~~~~ 536 (607)
T TIGR01135 462 DKHNFLFLGRGLGYPIALEGALKLKEISYIHAEGYPAGELKHGPIALI-----DEGLPVVAIAPKDSLFEKTKSNVEEVK 536 (607)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHHHHHHhccccchhhhccCcHhhh-----CCCCCEEEEEeCchHHHHHHHHHHHHH
Confidence 5567889999653 45555666665532 344567777733211 11123444443322 23678888
Q ss_pred hcCCCEEEEecCCCC----CCcceEEecCCCCCchhHHHH--HHHHHHHHHHhhcCC
Q 021180 143 LGNIPTIAFCDTDSP----MRYVDIGIPANNKGKHSIGCL--FWLLARMVLQMRGTI 193 (316)
Q Consensus 143 ~lnIPtIAL~DTds~----~~~VD~pIP~NndS~~SI~Li--~~lLaraVl~~rG~i 193 (316)
..+-.++.|.+.+.. ..-.++.+|..++-...+-++ +++|+..+-..||-.
T Consensus 537 ~~g~~v~~I~~~~~~~~~~~~~~~i~~p~~~~~l~pl~~~~p~Qlla~~~A~~~G~d 593 (607)
T TIGR01135 537 ARGARVIVFADEDDEFLESVADDVIKLPEVEELLAPIVYTVPLQLLAYHIALAKGTD 593 (607)
T ss_pred HcCCeEEEEECCCcccccccCCcEEECCCCCccchHHHHHHHHHHHHHHHHHHcCCC
Confidence 889999988654321 223456778765544444333 588888888888764
No 307
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=21.67 E-value=96 Score=22.53 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.5
Q ss_pred chhHHHhhhcCCCEEEEecCCC
Q 021180 135 HQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 135 ~qaI~EAs~lnIPtIAL~DTds 156 (316)
...++.|...|+..++|+|.++
T Consensus 18 ~~~~~~a~~~g~~~v~iTDh~~ 39 (67)
T smart00481 18 EELVKRAKELGLKAIAITDHGN 39 (67)
T ss_pred HHHHHHHHHcCCCEEEEeeCCc
Confidence 4678999999999999999973
No 308
>PRK10307 putative glycosyl transferase; Provisional
Probab=21.55 E-value=2.8e+02 Score=26.84 Aligned_cols=91 Identities=9% Similarity=-0.025 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCc-ccccccCCceEEEeCCCCC---
Q 021180 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPRTD--- 134 (316)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~-~~~~f~eP~llVV~DP~~d--- 134 (316)
++.|..|+..+.. ...-+++++|..+.- ..+++.++..|..- =+|+ |.+... ...-++.-|+.++..-...
T Consensus 244 ~~~li~a~~~l~~-~~~~~l~ivG~g~~~-~~l~~~~~~~~l~~--v~f~-G~~~~~~~~~~~~~aDi~v~ps~~e~~~~ 318 (412)
T PRK10307 244 LELVIDAARRLRD-RPDLIFVICGQGGGK-ARLEKMAQCRGLPN--VHFL-PLQPYDRLPALLKMADCHLLPQKAGAADL 318 (412)
T ss_pred HHHHHHHHHHhcc-CCCeEEEEECCChhH-HHHHHHHHHcCCCc--eEEe-CCCCHHHHHHHHHhcCEeEEeeccCcccc
Confidence 3445555543321 122457778776543 34555666555431 1344 333221 1122456677766543222
Q ss_pred --chhHHHhhhcCCCEEEEecC
Q 021180 135 --HQPIKEAALGNIPTIAFCDT 154 (316)
Q Consensus 135 --~qaI~EAs~lnIPtIAL~DT 154 (316)
...+-|+.-+|+|+|+--..
T Consensus 319 ~~p~kl~eama~G~PVi~s~~~ 340 (412)
T PRK10307 319 VLPSKLTNMLASGRNVVATAEP 340 (412)
T ss_pred cCcHHHHHHHHcCCCEEEEeCC
Confidence 12368999999999987543
No 309
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.49 E-value=2.5e+02 Score=28.32 Aligned_cols=91 Identities=19% Similarity=0.254 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCce-ecCCccCCccCCcccc------------cccCCceEE
Q 021180 61 KLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHA-IAGRHTPGTFTNQMQT------------SFNEPRLLI 127 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~-I~grw~pGtLTN~~~~------------~f~eP~llV 127 (316)
+....+.+|..+++.|..+.|-+|.++. |.++-...|-.+ +-|+.-+++|+..-.. .-..||+.+
T Consensus 12 hvhfFk~lI~elekkG~ev~iT~rd~~~--v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~kpdv~i 89 (346)
T COG1817 12 HVHFFKNLIWELEKKGHEVLITCRDFGV--VTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFKPDVAI 89 (346)
T ss_pred hhhHHHHHHHHHHhCCeEEEEEEeecCc--HHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcCCceEe
Confidence 3456677788888888777777776653 456666777654 4567767777743221 114788877
Q ss_pred EeCCCCCchhHHHhhhcCCCEEEEecCCC
Q 021180 128 LTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 128 V~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (316)
=. .+..+=+=+.-+|||.|.+.||-.
T Consensus 90 ~~---~s~~l~rvafgLg~psIi~~D~eh 115 (346)
T COG1817 90 GK---HSPELPRVAFGLGIPSIIFVDNEH 115 (346)
T ss_pred ec---CCcchhhHHhhcCCceEEecCChh
Confidence 53 345566778999999999999854
No 310
>PLN02573 pyruvate decarboxylase
Probab=21.46 E-value=2.6e+02 Score=29.41 Aligned_cols=70 Identities=10% Similarity=0.131 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhCCCcEEEEcc---CchhHHHHHHHHHHcCCceecCCccC-CccC---------------Cccc-cccc
Q 021180 62 LQMAARVIVAIENPGDIIVQSA---RPYGQRAVLKFAKYTHAHAIAGRHTP-GTFT---------------NQMQ-TSFN 121 (316)
Q Consensus 62 L~~Aa~~I~~I~n~~~ILfVst---r~~~q~aV~kfA~~tGa~~I~grw~p-GtLT---------------N~~~-~~f~ 121 (316)
+.+++..|.+-++ -+++++. +..+...+.+||+++|...++. |.+ |.|- +... ..+.
T Consensus 214 ~~~a~~~L~~Akr--Pvil~G~g~~~~~a~~~l~~lae~~~~PV~tt-~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~~~ 290 (578)
T PLN02573 214 VEAAAEFLNKAVK--PVLVGGPKLRVAKACKAFVELADASGYPVAVM-PSAKGLVPEHHPHFIGTYWGAVSTPFCAEIVE 290 (578)
T ss_pred HHHHHHHHHhCCC--CEEEEChhhcccchHHHHHHHHHHhCCCEEEC-cccCCCCCCcCCCceEEeeCCCCCHHHHHHHH
Confidence 5555555554433 3566665 3456788999999999977653 333 3333 2211 2357
Q ss_pred CCceEEEeCCCCC
Q 021180 122 EPRLLILTDPRTD 134 (316)
Q Consensus 122 eP~llVV~DP~~d 134 (316)
.-|+|+++..+-+
T Consensus 291 ~aDlvl~lG~~l~ 303 (578)
T PLN02573 291 SADAYLFAGPIFN 303 (578)
T ss_pred hCCEEEEECCccC
Confidence 8899999987643
No 311
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=21.41 E-value=1.1e+02 Score=28.01 Aligned_cols=93 Identities=20% Similarity=0.203 Sum_probs=43.9
Q ss_pred CCcEEEEccCc---hhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeC--CCCCchhHHHhhhcCCCEE
Q 021180 75 PGDIIVQSARP---YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD--PRTDHQPIKEAALGNIPTI 149 (316)
Q Consensus 75 ~~~ILfVstr~---~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D--P~~d~qaI~EAs~lnIPtI 149 (316)
...|-+||||. ++.+..+++++... . -..+||+. -.-|..+.+-|...+-|||
T Consensus 44 ~~~iaIvGsR~~s~~g~~~a~~l~~~l~----~------------------~g~~vvSGlA~GiD~~ah~~al~~~g~tI 101 (212)
T PF02481_consen 44 QPSIAIVGSRNPSEYGLKFAKKLARELA----K------------------AGIVVVSGLAKGIDAAAHRGALDAGGPTI 101 (212)
T ss_dssp S-EEEEE--SS--HHHHHHHHHHHHHHH----H------------------HT-EEEE---TTHHHHHHHHHTTT---EE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHh----h------------------CCEEEEcCCCCCHHHHHHHHHHHccCCEE
Confidence 56799999986 44444444444310 0 02333332 3457788999999999999
Q ss_pred EEecCCCCCCcceEEecCCCCCchhHHHHHHHHHHHHHHhhcCCCCCCCccceee
Q 021180 150 AFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVD 204 (316)
Q Consensus 150 AL~DTds~~~~VD~pIP~NndS~~SI~Li~~lLaraVl~~rG~i~~~~~w~v~~d 204 (316)
+++-+. +|...|.+| .-|.+.|+...|.+-.+.|-...+.
T Consensus 102 aVl~~g-----l~~~yP~~n----------~~l~~~i~~~~glliSe~~p~~~~~ 141 (212)
T PF02481_consen 102 AVLACG-----LDNIYPKEN----------RELAERILDEGGLLISEYPPGTKPS 141 (212)
T ss_dssp EE-SS------TTS-SSGGG----------HHHHHHHHHTT-EEEE-S-TT----
T ss_pred EEECCC-----cccccchhh----------HHHHHHHHhcCcEEEeCCCCCCCcc
Confidence 998543 334455544 3466777766665533444344443
No 312
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=21.38 E-value=3.3e+02 Score=28.42 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccCc---hhHHHHHHHHHHcCCceecCCccCCccCCc--------ccccccCCceEEEe
Q 021180 61 KLQMAARVIVAIENPGDIIVQSARP---YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ--------MQTSFNEPRLLILT 129 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVstr~---~~q~aV~kfA~~tGa~~I~grw~pGtLTN~--------~~~~f~eP~llVV~ 129 (316)
.+..++.+|.+-++ -++++|..- .....+.+||+++|+..++.-.-.|.+-.. ....+.+.||||++
T Consensus 209 ~~~~~~~~L~~Akr--Pvi~~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~~~~~~~~aDlvl~l 286 (569)
T PRK08327 209 DIARAAEMLAAAER--PVIITWRAGRTAEGFASLRRLAEELAIPVVEYAGEVVNYPSDHPLHLGPDPRADLAEADLVLVV 286 (569)
T ss_pred HHHHHHHHHHhCCC--CEEEEecccCCcccHHHHHHHHHHhCCCEEecCCCceeCCCCCccccccccchhhhhCCEEEEe
Confidence 35555555554333 356666632 467789999999999877531111222111 11235789999999
Q ss_pred CCCCC
Q 021180 130 DPRTD 134 (316)
Q Consensus 130 DP~~d 134 (316)
..+-+
T Consensus 287 G~~l~ 291 (569)
T PRK08327 287 DSDVP 291 (569)
T ss_pred CCCCC
Confidence 87643
No 313
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=21.37 E-value=1.5e+02 Score=30.76 Aligned_cols=97 Identities=14% Similarity=0.214 Sum_probs=62.6
Q ss_pred CCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccC
Q 021180 34 CDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFT 113 (316)
Q Consensus 34 ~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLT 113 (316)
-..++++|.|..... . +++....+++........|+|++|+....+... .-...| +.-..+.|.++
T Consensus 243 ~~~~i~q~~~~v~~~--------~--~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~-~l~~~g---~~~~~lhG~l~ 308 (513)
T COG0513 243 TLKKIKQFYLEVESE--------E--EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAE-SLRKRG---FKVAALHGDLP 308 (513)
T ss_pred cccCceEEEEEeCCH--------H--HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHH-HHHHCC---CeEEEecCCCC
Confidence 467888888776541 1 577777777776655568899999987776443 333344 22235667766
Q ss_pred Ccccc----cc--cCCceEEEeCCCCCchhHHHhhhcCCCEEEEe
Q 021180 114 NQMQT----SF--NEPRLLILTDPRTDHQPIKEAALGNIPTIAFC 152 (316)
Q Consensus 114 N~~~~----~f--~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~ 152 (316)
=.... .| .+-++||.||-- |.-+.||-|..|
T Consensus 309 q~~R~~~l~~F~~g~~~vLVaTDva--------aRGiDi~~v~~V 345 (513)
T COG0513 309 QEERDRALEKFKDGELRVLVATDVA--------ARGLDIPDVSHV 345 (513)
T ss_pred HHHHHHHHHHHHcCCCCEEEEechh--------hccCCcccccee
Confidence 44322 24 477899999964 677788866665
No 314
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.32 E-value=3e+02 Score=28.04 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=37.2
Q ss_pred ccCCceEEEeC-CCCCchhHHHhhhcCCCEEE-----Eec-CCCC-CCcceEEecCCCCCchhH-HHHHHHH
Q 021180 120 FNEPRLLILTD-PRTDHQPIKEAALGNIPTIA-----FCD-TDSP-MRYVDIGIPANNKGKHSI-GCLFWLL 182 (316)
Q Consensus 120 f~eP~llVV~D-P~~d~qaI~EAs~lnIPtIA-----L~D-Tds~-~~~VD~pIP~NndS~~SI-~Li~~lL 182 (316)
+..+|+||+.- -..++..+++|...|||+++ +.. .+.+ ...--+.|-|-| ++.+. .|+..+|
T Consensus 67 ~~~~d~vV~SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTn-GKTTTt~ll~~iL 137 (468)
T PRK04690 67 LAAFDVVVKSPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTK-GKSTTTALLAHLL 137 (468)
T ss_pred ccCCCEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCC-CHHHHHHHHHHHH
Confidence 35578776653 23477889999999999997 332 1111 011358888864 44444 4444444
No 315
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=21.08 E-value=3.9e+02 Score=25.45 Aligned_cols=30 Identities=33% Similarity=0.359 Sum_probs=21.2
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCEEEEecCC
Q 021180 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTD 155 (316)
Q Consensus 122 eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTd 155 (316)
.-++ ||++. ...+.||..+|+|+|++-+..
T Consensus 274 ~ad~-vv~~S---g~~~~EA~a~g~PvI~~~~~~ 303 (365)
T TIGR00236 274 NSHL-ILTDS---GGVQEEAPSLGKPVLVLRDTT 303 (365)
T ss_pred hCCE-EEECC---hhHHHHHHHcCCCEEECCCCC
Confidence 3444 45655 245799999999999986543
No 316
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.02 E-value=3e+02 Score=28.17 Aligned_cols=85 Identities=11% Similarity=0.094 Sum_probs=45.1
Q ss_pred CccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEE
Q 021180 49 GIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLIL 128 (316)
Q Consensus 49 Gi~IINL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV 128 (316)
.++|+=+.++=.. +++++. ..+.+|.+...++. . +.+ ++..|..++.+.+.. ..++..|+||+
T Consensus 14 ~v~V~G~G~sG~a---a~~~L~--~~G~~v~~~D~~~~-~--~~~-l~~~g~~~~~~~~~~--------~~l~~~D~VV~ 76 (488)
T PRK03369 14 PVLVAGAGVTGRA---VLAALT--RFGARPTVCDDDPD-A--LRP-HAERGVATVSTSDAV--------QQIADYALVVT 76 (488)
T ss_pred eEEEEcCCHHHHH---HHHHHH--HCCCEEEEEcCCHH-H--HHH-HHhCCCEEEcCcchH--------hHhhcCCEEEE
Confidence 3566666654322 223332 24455655443322 1 222 333566555443321 12345687666
Q ss_pred eC-CCCCchhHHHhhhcCCCEEE
Q 021180 129 TD-PRTDHQPIKEAALGNIPTIA 150 (316)
Q Consensus 129 ~D-P~~d~qaI~EAs~lnIPtIA 150 (316)
.- -..++..+++|...|||+++
T Consensus 77 SpGi~~~~p~~~~a~~~gi~v~~ 99 (488)
T PRK03369 77 SPGFRPTAPVLAAAAAAGVPIWG 99 (488)
T ss_pred CCCCCCCCHHHHHHHHCCCcEee
Confidence 54 23467789999999999996
No 317
>PRK00521 rbfA ribosome-binding factor A; Validated
Probab=21.02 E-value=1.4e+02 Score=24.96 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=40.6
Q ss_pred CCEEEEecCCCCCCc--ceEEecCCCCCchhHHHHHHHHHHHHHHhhcCCCCCCCccceeecccccCcc
Q 021180 146 IPTIAFCDTDSPMRY--VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPE 212 (316)
Q Consensus 146 IPtIAL~DTds~~~~--VD~pIP~NndS~~SI~Li~~lLaraVl~~rG~i~~~~~w~v~~dl~fyrdpe 212 (316)
..+|.=|+...|++. |-|-+.++.... .-++..|-++=-+.|..+.+.-.|..+|.|.|+.|..
T Consensus 34 ~vtIt~V~vS~Dl~~AkVyvs~~~~~~~~---~~~~~~L~~~~~~iR~~la~~l~lr~~P~L~F~~D~s 99 (120)
T PRK00521 34 MVTVTDVEVSPDLAHAKVYVTVLGDEEDK---EEALAALKKAAGFLRSELGKRLRLRYVPELRFVYDES 99 (120)
T ss_pred eeEEEEEEECCCCCEEEEEEEECCCchhH---HHHHHHHHHhHHHHHHHHHhhCCCccCCEEEEEECCC
Confidence 345555556666665 555555543332 3334455666666666666666789999999999876
No 318
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=20.98 E-value=3.7e+02 Score=24.36 Aligned_cols=90 Identities=11% Similarity=0.034 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcc-cccccCCceEEEeCCC-----
Q 021180 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM-QTSFNEPRLLILTDPR----- 132 (316)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~-~~~f~eP~llVV~DP~----- 132 (316)
.+.|..+++.+..-...-.+.++|..+... .+.++++..+... +=++ -|.++... ...++.-|+++.....
T Consensus 194 ~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~-~~~~~~~~~~~~~-~v~~-~g~~~~~~l~~~~~~adi~l~~s~~~~~~~ 270 (355)
T cd03799 194 LDYLLEALALLKDRGIDFRLDIVGDGPLRD-ELEALIAELGLED-RVTL-LGAKSQEEVRELLRAADLFVLPSVTAADGD 270 (355)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEECCccHH-HHHHHHHHcCCCC-eEEE-CCcCChHHHHHHHHhCCEEEecceecCCCC
Confidence 344444444333221244677788766544 3445555543221 0112 24444222 2234566776665432
Q ss_pred --CCchhHHHhhhcCCCEEEE
Q 021180 133 --TDHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 133 --~d~qaI~EAs~lnIPtIAL 151 (316)
.-...+-||..+|+|+|+.
T Consensus 271 ~e~~~~~~~Ea~a~G~Pvi~~ 291 (355)
T cd03799 271 REGLPVVLMEAMAMGLPVIST 291 (355)
T ss_pred ccCccHHHHHHHHcCCCEEec
Confidence 1246789999999999983
No 319
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.79 E-value=1.3e+02 Score=26.86 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=26.0
Q ss_pred CcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEE
Q 021180 114 NQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 114 N~~~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL 151 (316)
|.....--.|||||..+...+...+.....++||++.+
T Consensus 49 n~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~ 86 (245)
T cd01144 49 DLERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVS 86 (245)
T ss_pred CHHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEe
Confidence 44444457899998765443333477788899998776
No 320
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=20.75 E-value=3.7e+02 Score=27.94 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=65.7
Q ss_pred ccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEe
Q 021180 50 IYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT 129 (316)
Q Consensus 50 i~IINL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~ 129 (316)
+.|+=|.+|=. -+++++. +.+.+|.+...|+.............|..+..|++.- ..+...|+||+.
T Consensus 10 v~V~GLG~sG~---a~a~~L~--~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~--------~~~~~~d~vV~S 76 (448)
T COG0771 10 VLVLGLGKSGL---AAARFLL--KLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDD--------EDLAEFDLVVKS 76 (448)
T ss_pred EEEEecccccH---HHHHHHH--HCCCeEEEEcCCCCccchhhhhhhccCceeecCccch--------hccccCCEEEEC
Confidence 55555555532 2233333 2456666666666553222223334555555554332 223455665544
Q ss_pred -CCCCCchhHHHhhhcCCCEEEEecCCCCC--CcceEEecCCCCCchhHHHHHHHHHHHHH
Q 021180 130 -DPRTDHQPIKEAALGNIPTIAFCDTDSPM--RYVDIGIPANNKGKHSIGCLFWLLARMVL 187 (316)
Q Consensus 130 -DP~~d~qaI~EAs~lnIPtIAL~DTds~~--~~VD~pIP~NndS~~SI~Li~~lLaraVl 187 (316)
.-..+|-.|.+|...|||+++=+..=... ..=-++|=|-|--..-..|+..+|-..-.
T Consensus 77 PGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~ 137 (448)
T COG0771 77 PGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGL 137 (448)
T ss_pred CCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCC
Confidence 23456788999999999999733221110 11157777765444445666655544433
No 321
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=20.63 E-value=3.2e+02 Score=27.37 Aligned_cols=102 Identities=19% Similarity=0.218 Sum_probs=60.6
Q ss_pred CccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEE
Q 021180 49 GIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLIL 128 (316)
Q Consensus 49 Gi~IINL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV 128 (316)
-+|++|++...+++..-.+.+ . .-+ ++-+-|-.....|+++....|+.+-. =.+|-|---....| .|+-||.
T Consensus 14 p~yv~d~~~i~~~~~~l~~~l---p-~~~-~~YAvKaN~~~~il~~l~~~G~g~Dv--aS~gEl~~al~~G~-~~~~Iif 85 (394)
T cd06831 14 AFFVGDLGKIVKKHSQWQTVM---A-QIK-PFYTVRCNSTPAVLEILAALGTGFAC--SSKNEMALVQELGV-SPENIIY 85 (394)
T ss_pred CeEEEEHHHHHHHHHHHHHHC---C-CCe-EEeeeccCCCHHHHHHHHHcCCCeEe--CCHHHHHHHHhcCC-CcCCEEE
Confidence 578888877655544333322 1 122 33344544555677777787765421 11222221112223 5777999
Q ss_pred eCCCCCchhHHHhhhcCCCEEEEecCCCCCC
Q 021180 129 TDPRTDHQPIKEAALGNIPTIAFCDTDSPMR 159 (316)
Q Consensus 129 ~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~ 159 (316)
+.|.+...-|++|...|+.+| .+|+-..++
T Consensus 86 ~gp~K~~~~l~~a~~~Gv~~i-~vDS~~El~ 115 (394)
T cd06831 86 TNPCKQASQIKYAAKVGVNIM-TCDNEIELK 115 (394)
T ss_pred eCCCCCHHHHHHHHHCCCCEE-EECCHHHHH
Confidence 999999999999999999877 356654443
No 322
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=20.56 E-value=8.1e+02 Score=26.73 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=54.2
Q ss_pred ccccCHHHHHHHHHHHHHHHHHh--hCCCcEEEEccCchhHHHHHHHHHHcCCceec--CCcc------------CCccC
Q 021180 50 IYIINLGKTWEKLQMAARVIVAI--ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA--GRHT------------PGTFT 113 (316)
Q Consensus 50 i~IINL~kT~ekL~~Aa~~I~~I--~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~--grw~------------pGtLT 113 (316)
.--|+-+.-+. ..+.-|..| +.+..|.|++++...+....+|+...|...+. +++. ++.+.
T Consensus 70 f~~ISWDEAld---~IA~kL~~i~~~gp~~ia~~~g~~~~~~l~~~f~~~lGt~n~~~~~~~C~~~~~~a~~~~~G~~~~ 146 (679)
T cd02763 70 FEEIEWEEAFS---IATKRLKAARATDPKKFAFFTGRDQMQALTGWFAGQFGTPNYAAHGGFCSVNMAAGGLYSIGGSFW 146 (679)
T ss_pred eEEeCHHHHHH---HHHHHHHHHHHhCCCeEEEEeCCccHHHHHHHHHHhcCCCCcCCCCCcchHHHHHHHHHhhCCCCC
Confidence 44455554433 334445554 24667888876666666777888887764332 1111 11111
Q ss_pred CcccccccCCceEEEeCCCCCc------hhHHHhhhcCCCEEEE
Q 021180 114 NQMQTSFNEPRLLILTDPRTDH------QPIKEAALGNIPTIAF 151 (316)
Q Consensus 114 N~~~~~f~eP~llVV~DP~~d~------qaI~EAs~lnIPtIAL 151 (316)
.....-+..-|+||+...+.++ ..++++++-|..+|.|
T Consensus 147 ~~~~~D~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvI 190 (679)
T cd02763 147 EFGGPDLEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAV 190 (679)
T ss_pred CCChhHHHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEE
Confidence 1111123567889997644332 3466787778777755
No 323
>PRK07064 hypothetical protein; Provisional
Probab=20.55 E-value=4e+02 Score=27.34 Aligned_cols=70 Identities=10% Similarity=0.131 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCc-hhHHHHHHHHHHcCCceecCCccCCccCCccc-------------ccccCCceEE
Q 021180 62 LQMAARVIVAIENPGDIIVQSARP-YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ-------------TSFNEPRLLI 127 (316)
Q Consensus 62 L~~Aa~~I~~I~n~~~ILfVstr~-~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~-------------~~f~eP~llV 127 (316)
+.+++..|..- ..-++++|..- ...+.+.+||+ +|+..++.-.-.|.|-.... ..+.+.|+||
T Consensus 193 i~~~~~~l~~A--krPvi~~G~g~~~a~~~l~~lae-~~~pv~~t~~~kg~~~~~hp~~~G~~~~~~~~~~~~~~aDlvl 269 (544)
T PRK07064 193 VAELAERLAAA--RRPLLWLGGGARHAGAEVKRLVD-LGFGVVTSTQGRGVVPEDHPASLGAFNNSAAVEALYKTCDLLL 269 (544)
T ss_pred HHHHHHHHHhC--CCCEEEECCChHhHHHHHHHHHH-cCCCEEEccCccccCCCCChhhcccCCCCHHHHHHHHhCCEEE
Confidence 44444444432 33466777632 45577889999 99988765444455432211 1257899999
Q ss_pred EeCCCCC
Q 021180 128 LTDPRTD 134 (316)
Q Consensus 128 V~DP~~d 134 (316)
++..+-+
T Consensus 270 ~iG~~~~ 276 (544)
T PRK07064 270 VVGSRLR 276 (544)
T ss_pred EecCCCC
Confidence 9987654
No 324
>PRK12474 hypothetical protein; Provisional
Probab=20.50 E-value=2.2e+02 Score=29.20 Aligned_cols=70 Identities=10% Similarity=0.116 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCceecCCc------cCCccC--C------cccccccCC
Q 021180 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRH------TPGTFT--N------QMQTSFNEP 123 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~grw------~pGtLT--N------~~~~~f~eP 123 (316)
.+.+++..|.+-++ -+++++.. ......+.+||+++|+..++.-+ --|.|- + .....+.+-
T Consensus 190 ~i~~~~~~L~~A~r--Pvil~G~g~~~~~a~~~l~~lae~~g~PV~~t~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~a 267 (518)
T PRK12474 190 TVERIAALLRNGKK--SALLLRGSALRGAPLEAAGRIQAKTGVRLYCDTFAPRIERGAGRVPIERIPYFHEQITAFLKDV 267 (518)
T ss_pred HHHHHHHHHHcCCC--cEEEECCccchhhHHHHHHHHHHHHCCCEEEecCcccccCCCCCCCCcccccchHHHHHHHhhC
Confidence 45556666554433 36666653 34678889999999998764311 123332 1 111236889
Q ss_pred ceEEEeCCC
Q 021180 124 RLLILTDPR 132 (316)
Q Consensus 124 ~llVV~DP~ 132 (316)
|+|+++..+
T Consensus 268 Dlvl~lG~~ 276 (518)
T PRK12474 268 EQLVLVGAK 276 (518)
T ss_pred CEEEEECCC
Confidence 999999976
No 325
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=20.45 E-value=3.7e+02 Score=27.60 Aligned_cols=69 Identities=10% Similarity=0.127 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCceecCCcc-CCccCCc--------------ccccccCC
Q 021180 62 LQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHT-PGTFTNQ--------------MQTSFNEP 123 (316)
Q Consensus 62 L~~Aa~~I~~I~n~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~grw~-pGtLTN~--------------~~~~f~eP 123 (316)
+..++..|.+- +.-++++|.. ....+.+.+||+++|+..++.-+- -|.|-.. ....+++.
T Consensus 196 ~~~~~~~L~~A--krPvIl~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~~kg~~~~~hp~~~G~~g~~~~~~~~~l~~a 273 (530)
T PRK07092 196 LARLGDALDAA--RRPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSGRCSFPEDHPLFAGFLPASREKISALLDGH 273 (530)
T ss_pred HHHHHHHHHcC--CCcEEEECCCcchhhhHHHHHHHHHHHCCcEEEecCCCcCcCCCCCccccCcCCccHHHHHHHHhhC
Confidence 34444444332 2335666662 345688999999999977643221 1221111 11235799
Q ss_pred ceEEEeCCC
Q 021180 124 RLLILTDPR 132 (316)
Q Consensus 124 ~llVV~DP~ 132 (316)
|+||++..+
T Consensus 274 Dlvl~lG~~ 282 (530)
T PRK07092 274 DLVLVIGAP 282 (530)
T ss_pred CEEEEECCc
Confidence 999999975
No 326
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=20.39 E-value=2.3e+02 Score=26.17 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=29.0
Q ss_pred cCCceEEEeCCC-CCchhHHHhhhcCCCEEEEecCCCCCCcceEEec
Q 021180 121 NEPRLLILTDPR-TDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIP 166 (316)
Q Consensus 121 ~eP~llVV~DP~-~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP 166 (316)
+..|.||+.... .+...+++....+||+|.+ |.+.+...+++...
T Consensus 116 ~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~v-~~~~~~~~~~~V~~ 161 (328)
T PRK11303 116 RQVDALIVSTSLPPEHPFYQRLQNDGLPIIAL-DRALDREHFTSVVS 161 (328)
T ss_pred cCCCEEEEcCCCCCChHHHHHHHhcCCCEEEE-CCCCCCCCCCEEEe
Confidence 467888887532 2345678888889999875 66544333454443
No 327
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=20.25 E-value=3.5e+02 Score=25.43 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=22.8
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTD 155 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTd 155 (316)
..-|++|.. .. .-+.|+..+|+|+|.++-.+
T Consensus 240 ~~aDl~Is~---~G-~T~~E~~a~g~P~i~i~~~~ 270 (279)
T TIGR03590 240 NEADLAIGA---AG-STSWERCCLGLPSLAICLAE 270 (279)
T ss_pred HHCCEEEEC---Cc-hHHHHHHHcCCCEEEEEecc
Confidence 566766652 22 67999999999999986543
No 328
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.06 E-value=3.9e+02 Score=23.51 Aligned_cols=34 Identities=6% Similarity=0.010 Sum_probs=23.0
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCC----CEEEEecCC
Q 021180 122 EPRLLILTDPRTDHQPIKEAALGNI----PTIAFCDTD 155 (316)
Q Consensus 122 eP~llVV~DP~~d~qaI~EAs~lnI----PtIAL~DTd 155 (316)
.|+.||+.+-..-..+++.+...|+ .++++.|+.
T Consensus 187 ~~~ai~~~~d~~a~g~~~~l~~~g~~~dv~v~g~d~~~ 224 (275)
T cd06317 187 DIDGVYAGDDNMARGALNAAKEAGLAGGIVIVGANNFA 224 (275)
T ss_pred CccEEEECCCcHHHHHHHHHHhcCCcCCcEEEEeCCCH
Confidence 4788887764444456666666665 888888774
Done!