Query 021180
Match_columns 316
No_of_seqs 228 out of 1349
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 13:55:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_A 40S ribosomal protein S 100.0 6.5E-98 2E-102 705.8 15.7 287 1-311 1-294 (305)
2 3u5c_A 40S ribosomal protein S 100.0 1.8E-88 6.1E-93 630.1 20.6 218 8-225 3-221 (252)
3 2zkq_b 40S ribosomal protein S 100.0 3E-87 1E-91 633.6 17.6 268 9-286 5-280 (295)
4 3bch_A 40S ribosomal protein S 100.0 6.5E-84 2.2E-88 599.8 20.6 222 1-222 30-251 (253)
5 2xzm_B RPS0E; ribosome, transl 100.0 1.6E-83 5.6E-88 594.4 19.1 212 11-222 2-214 (241)
6 3j20_B 30S ribosomal protein S 100.0 1.4E-72 4.7E-77 509.7 20.1 192 17-209 7-198 (202)
7 1vi6_A 30S ribosomal protein S 100.0 4.6E-72 1.6E-76 508.2 18.0 191 17-213 11-201 (208)
8 2vqe_B 30S ribosomal protein S 100.0 2.1E-63 7.1E-68 463.6 8.7 180 17-199 5-233 (256)
9 3bbn_B Ribosomal protein S2; s 100.0 1.7E-61 5.7E-66 445.2 15.1 175 17-192 4-227 (231)
10 3r8n_B 30S ribosomal protein S 100.0 2.5E-62 8.6E-67 447.3 4.2 168 22-190 1-217 (218)
11 2yva_A DNAA initiator-associat 95.9 0.065 2.2E-06 45.5 10.6 132 53-188 14-188 (196)
12 1m3s_A Hypothetical protein YC 95.5 0.084 2.9E-06 44.4 9.9 120 62-192 27-173 (186)
13 2i2w_A Phosphoheptose isomeras 95.4 0.23 7.9E-06 43.1 12.5 107 61-169 49-184 (212)
14 1nri_A Hypothetical protein HI 95.0 0.11 3.8E-06 48.3 9.7 148 54-205 49-236 (306)
15 1vim_A Hypothetical protein AF 94.7 0.18 6.3E-06 43.4 9.9 113 72-192 44-183 (200)
16 3etn_A Putative phosphosugar i 94.7 0.43 1.5E-05 41.9 12.2 129 61-192 43-196 (220)
17 1jeo_A MJ1247, hypothetical pr 94.0 0.32 1.1E-05 40.6 9.6 113 72-192 37-167 (180)
18 3fxa_A SIS domain protein; str 94.0 0.24 8.1E-06 42.3 8.9 114 76-192 46-180 (201)
19 3trj_A Phosphoheptose isomeras 93.9 0.68 2.3E-05 40.2 11.6 109 61-173 31-174 (201)
20 3sho_A Transcriptional regulat 93.7 0.16 5.4E-06 42.7 7.0 119 62-188 29-165 (187)
21 2xbl_A Phosphoheptose isomeras 93.6 1.9 6.4E-05 36.2 13.7 107 60-170 32-170 (198)
22 2xhz_A KDSD, YRBH, arabinose 5 93.4 0.27 9.3E-06 41.1 8.0 112 76-190 50-182 (183)
23 1x92_A APC5045, phosphoheptose 93.1 1.1 3.7E-05 38.0 11.4 115 54-172 19-172 (199)
24 2a3n_A Putative glucosamine-fr 92.8 0.61 2.1E-05 43.9 10.3 137 52-191 29-178 (355)
25 2aml_A SIS domain protein; 469 92.7 0.5 1.7E-05 44.9 9.7 75 120-194 95-185 (373)
26 1tk9_A Phosphoheptose isomeras 92.6 1.4 4.6E-05 36.8 11.2 111 60-171 26-165 (188)
27 3knz_A Putative sugar binding 92.2 0.91 3.1E-05 43.3 10.8 121 72-195 47-185 (366)
28 3cvj_A Putative phosphoheptose 91.2 0.69 2.4E-05 40.8 8.2 94 60-154 26-144 (243)
29 3g68_A Putative phosphosugar i 90.3 1.8 6.1E-05 40.9 10.6 119 73-194 32-169 (352)
30 3jx9_A Putative phosphoheptose 85.3 3.2 0.00011 35.9 8.2 96 60-164 22-127 (170)
31 3eua_A Putative fructose-amino 84.6 3.5 0.00012 38.3 8.8 116 74-191 24-153 (329)
32 3fkj_A Putative phosphosugar i 82.2 6.5 0.00022 36.9 9.6 107 60-168 25-141 (347)
33 3hba_A Putative phosphosugar i 81.3 13 0.00044 34.8 11.3 94 73-168 40-142 (334)
34 3fj1_A Putative phosphosugar i 80.1 15 0.00051 34.4 11.3 93 73-167 41-142 (344)
35 1moq_A Glucosamine 6-phosphate 79.9 3.7 0.00013 38.6 7.0 72 120-191 97-184 (368)
36 3tbf_A Glucosamine--fructose-6 79.8 3.6 0.00012 39.1 7.0 120 72-194 51-189 (372)
37 2zj3_A Glucosamine--fructose-6 78.3 1.4 4.7E-05 41.9 3.6 48 121-168 106-159 (375)
38 2xci_A KDO-transferase, 3-deox 77.0 7.8 0.00027 36.1 8.3 90 60-150 210-307 (374)
39 2poc_A D-fructose-6- PH, isome 76.7 3 0.0001 39.4 5.3 72 121-192 96-182 (367)
40 3dfz_A SIRC, precorrin-2 dehyd 74.5 4.7 0.00016 36.1 5.8 107 49-173 33-152 (223)
41 3iz6_A 40S ribosomal protein S 69.9 0.23 7.9E-06 47.2 -4.1 26 261-292 272-297 (305)
42 2bpl_A Glucosamine--fructose-6 66.1 11 0.00036 38.2 6.9 117 72-191 289-424 (608)
43 3h5t_A Transcriptional regulat 64.6 46 0.0016 30.0 10.3 58 121-182 127-184 (366)
44 3gv0_A Transcriptional regulat 61.2 18 0.00062 31.4 6.7 44 121-165 65-108 (288)
45 3qhp_A Type 1 capsular polysac 60.7 9.7 0.00033 30.0 4.5 88 59-153 17-107 (166)
46 2bfw_A GLGA glycogen synthase; 59.7 21 0.00073 28.8 6.5 88 60-151 53-145 (200)
47 3c3j_A Putative tagatose-6-pho 57.4 36 0.0012 32.1 8.5 38 121-158 102-146 (384)
48 2vsy_A XCC0866; transferase, g 55.1 24 0.00084 33.7 7.0 91 60-151 391-482 (568)
49 1j5x_A Glucosamine-6-phosphate 55.1 10 0.00036 35.2 4.2 93 72-167 49-151 (342)
50 3cs3_A Sugar-binding transcrip 53.9 44 0.0015 28.6 7.8 42 122-164 57-98 (277)
51 3s2u_A UDP-N-acetylglucosamine 53.3 14 0.00049 34.1 4.9 35 121-156 91-125 (365)
52 2jjm_A Glycosyl transferase, g 52.9 1.3E+02 0.0043 27.0 11.1 100 56-161 223-323 (394)
53 3hgt_A HDA1 complex subunit 3; 52.6 45 0.0015 31.7 8.2 131 55-193 104-272 (328)
54 3qk7_A Transcriptional regulat 52.2 29 0.00099 30.2 6.5 58 121-182 64-121 (294)
55 3lvj_C Sulfurtransferase TUSA; 51.2 26 0.00088 26.2 5.2 49 64-112 26-74 (82)
56 3r75_A Anthranilate/para-amino 50.7 36 0.0012 35.1 7.7 71 75-152 446-528 (645)
57 3k4h_A Putative transcriptiona 50.0 34 0.0012 29.3 6.5 43 121-164 68-111 (292)
58 3egc_A Putative ribose operon 49.6 27 0.00091 30.2 5.8 44 121-165 63-106 (291)
59 3uow_A GMP synthetase; structu 49.0 42 0.0014 33.7 7.8 76 74-153 6-91 (556)
60 3hz7_A Uncharacterized protein 49.0 22 0.00077 27.0 4.6 52 62-113 15-67 (87)
61 3huu_A Transcription regulator 48.7 35 0.0012 29.7 6.5 57 121-181 82-138 (305)
62 3bbl_A Regulatory protein of L 47.6 37 0.0013 29.3 6.4 35 121-156 63-97 (287)
63 3hcw_A Maltose operon transcri 47.5 33 0.0011 29.9 6.0 36 121-157 67-102 (295)
64 2fep_A Catabolite control prot 47.3 41 0.0014 29.1 6.6 43 121-164 71-113 (289)
65 3d8u_A PURR transcriptional re 47.0 36 0.0012 28.9 6.1 43 121-164 58-100 (275)
66 2rgy_A Transcriptional regulat 45.8 45 0.0015 28.8 6.7 58 121-182 66-123 (290)
67 1pav_A Hypothetical protein TA 45.7 22 0.00076 26.0 4.0 48 66-113 24-71 (78)
68 1gpw_B Amidotransferase HISH; 45.6 50 0.0017 27.7 6.7 34 121-154 41-86 (201)
69 1pjq_A CYSG, siroheme synthase 45.4 1.1E+02 0.0036 29.7 9.9 98 65-173 24-134 (457)
70 3m9w_A D-xylose-binding peripl 44.7 57 0.002 28.4 7.2 41 121-162 57-99 (313)
71 3m3p_A Glutamine amido transfe 44.7 49 0.0017 29.7 6.9 74 75-152 3-89 (250)
72 3brq_A HTH-type transcriptiona 44.3 58 0.002 27.7 7.1 43 121-164 76-119 (296)
73 3rot_A ABC sugar transporter, 44.2 47 0.0016 28.8 6.6 36 121-157 60-97 (297)
74 2e5f_A Hypothetical protein PH 43.6 15 0.00051 33.9 3.3 62 122-186 79-153 (325)
75 1tjy_A Sugar transport protein 43.3 38 0.0013 30.0 5.9 36 121-157 59-96 (316)
76 2zxr_A Single-stranded DNA spe 43.2 1.2E+02 0.0041 31.5 10.3 95 62-157 58-163 (666)
77 1ka9_H Imidazole glycerol phos 43.1 65 0.0022 27.1 7.1 34 120-153 38-83 (200)
78 3k9c_A Transcriptional regulat 42.7 39 0.0013 29.3 5.7 57 121-182 65-121 (289)
79 1f0k_A MURG, UDP-N-acetylgluco 42.7 41 0.0014 29.8 6.0 84 56-151 196-280 (364)
80 1jdq_A TM006 protein, hypothet 42.6 36 0.0012 26.5 4.9 48 65-112 43-91 (98)
81 3fro_A GLGA glycogen synthase; 42.5 43 0.0015 30.1 6.2 89 59-151 267-360 (439)
82 3knz_A Putative sugar binding 42.5 1.6E+02 0.0055 27.6 10.4 114 73-193 221-347 (366)
83 3oy2_A Glycosyltransferase B73 42.2 57 0.0019 29.5 7.0 96 56-151 196-303 (413)
84 4fmw_A RNA (guanine-9-)-methyl 42.1 31 0.0011 30.3 5.0 74 55-134 38-111 (197)
85 3o74_A Fructose transport syst 42.1 43 0.0015 28.2 5.8 44 121-165 57-101 (272)
86 3jy6_A Transcriptional regulat 42.0 55 0.0019 27.9 6.5 57 121-182 62-118 (276)
87 1tzb_A Glucose-6-phosphate iso 41.6 66 0.0022 29.1 7.3 44 121-165 78-125 (302)
88 3odp_A Putative tagatose-6-pho 41.4 2.2E+02 0.0076 27.0 11.3 119 74-199 229-375 (393)
89 3cf4_G Acetyl-COA decarboxylas 41.1 52 0.0018 27.4 6.1 58 76-133 36-118 (170)
90 2pln_A HP1043, response regula 40.7 41 0.0014 25.2 5.0 74 74-155 17-96 (137)
91 3kjx_A Transcriptional regulat 40.4 76 0.0026 28.2 7.4 101 56-157 39-159 (344)
92 3l6u_A ABC-type sugar transpor 40.2 63 0.0022 27.6 6.7 59 121-183 63-124 (293)
93 2f9f_A First mannosyl transfer 39.3 20 0.00069 29.0 3.1 88 57-151 36-127 (177)
94 4gud_A Imidazole glycerol phos 39.1 43 0.0015 28.3 5.3 69 76-153 3-80 (211)
95 3ot5_A UDP-N-acetylglucosamine 38.9 31 0.0011 32.5 4.8 32 121-152 113-145 (403)
96 2iuy_A Avigt4, glycosyltransfe 38.1 62 0.0021 28.4 6.4 86 56-151 174-271 (342)
97 3i0z_A Putative tagatose-6-pho 37.0 2.8E+02 0.0095 26.3 12.4 118 74-198 229-369 (389)
98 4gyw_A UDP-N-acetylglucosamine 36.6 56 0.0019 33.6 6.6 104 40-152 523-629 (723)
99 3e3m_A Transcriptional regulat 36.4 83 0.0028 28.2 7.1 36 121-156 125-160 (355)
100 3md9_A Hemin-binding periplasm 36.4 29 0.00099 30.0 3.8 32 120-151 57-88 (255)
101 3kke_A LACI family transcripti 36.1 66 0.0023 28.0 6.2 56 121-182 70-126 (303)
102 2gek_A Phosphatidylinositol ma 36.1 43 0.0015 29.9 5.1 89 57-151 222-313 (406)
103 2x6q_A Trehalose-synthase TRET 35.9 91 0.0031 28.2 7.3 90 59-151 246-345 (416)
104 3clk_A Transcription regulator 35.0 52 0.0018 28.3 5.3 36 121-157 64-99 (290)
105 3c3k_A Alanine racemase; struc 34.7 60 0.0021 27.9 5.7 42 121-164 63-104 (285)
106 2h3h_A Sugar ABC transporter, 34.7 90 0.0031 27.2 6.9 44 121-165 56-102 (313)
107 4dad_A Putative pilus assembly 34.6 88 0.003 23.6 6.1 80 74-155 19-105 (146)
108 3gbv_A Putative LACI-family tr 34.4 67 0.0023 27.4 5.9 44 121-165 68-114 (304)
109 2qzs_A Glycogen synthase; glyc 33.8 48 0.0016 30.9 5.1 89 57-151 305-396 (485)
110 2r7a_A Bacterial heme binding 33.4 34 0.0012 29.5 3.8 34 118-151 55-88 (256)
111 3ksm_A ABC-type sugar transpor 33.4 98 0.0033 25.9 6.7 34 123-157 60-95 (276)
112 3tb6_A Arabinose metabolism tr 32.6 78 0.0027 26.9 6.0 43 121-164 70-117 (298)
113 3tbf_A Glucosamine--fructose-6 32.3 3.1E+02 0.011 25.5 14.2 116 73-193 225-358 (372)
114 1rzu_A Glycogen synthase 1; gl 32.2 44 0.0015 31.1 4.6 89 57-151 304-395 (485)
115 3egc_A Putative ribose operon 31.9 70 0.0024 27.4 5.6 92 63-155 114-225 (291)
116 2o20_A Catabolite control prot 31.8 89 0.003 27.6 6.4 43 121-164 118-160 (332)
117 3g68_A Putative phosphosugar i 31.7 3.1E+02 0.011 25.3 13.2 114 73-193 206-332 (352)
118 3g1w_A Sugar ABC transporter; 31.4 93 0.0032 26.8 6.3 44 121-165 60-106 (305)
119 3brs_A Periplasmic binding pro 31.1 81 0.0028 26.8 5.8 35 121-156 64-100 (289)
120 3qk7_A Transcriptional regulat 30.8 61 0.0021 28.1 5.1 59 121-179 186-255 (294)
121 1a9x_B Carbamoyl phosphate syn 30.7 63 0.0021 31.1 5.5 70 77-152 192-268 (379)
122 2fn9_A Ribose ABC transporter, 30.6 1E+02 0.0035 26.3 6.4 34 121-155 57-92 (290)
123 3l7n_A Putative uncharacterize 30.1 98 0.0034 26.9 6.3 71 78-152 3-91 (236)
124 3hvu_A Hypoxanthine phosphorib 30.0 1.9E+02 0.0064 25.2 8.0 76 24-101 8-83 (204)
125 2r79_A Periplasmic binding pro 29.9 39 0.0013 29.8 3.6 32 120-151 57-88 (283)
126 1n2z_A Vitamin B12 transport p 29.5 36 0.0012 29.2 3.3 31 121-151 56-86 (245)
127 4hv4_A UDP-N-acetylmuramate--L 29.5 94 0.0032 30.3 6.6 58 120-178 79-139 (494)
128 1jx6_A LUXP protein; protein-l 29.5 1.1E+02 0.0037 26.9 6.6 35 121-156 103-139 (342)
129 3o1i_D Periplasmic protein TOR 29.4 53 0.0018 28.2 4.3 30 121-151 62-93 (304)
130 3h5o_A Transcriptional regulat 28.3 1.4E+02 0.0049 26.3 7.2 33 121-153 117-149 (339)
131 1dbq_A Purine repressor; trans 27.7 1.5E+02 0.0053 25.0 7.0 119 63-182 115-257 (289)
132 4hwg_A UDP-N-acetylglucosamine 27.2 41 0.0014 31.7 3.4 33 121-154 93-125 (385)
133 3eod_A Protein HNR; response r 27.0 1.7E+02 0.0058 21.3 6.4 75 74-155 6-89 (130)
134 3odp_A Putative tagatose-6-pho 27.0 2.4E+02 0.0082 26.8 8.9 38 121-158 107-151 (393)
135 3jte_A Response regulator rece 26.7 1E+02 0.0036 23.0 5.2 73 76-155 4-87 (143)
136 3psh_A Protein HI_1472; substr 26.1 58 0.002 29.2 4.1 33 121-154 83-115 (326)
137 3lq1_A 2-succinyl-5-enolpyruvy 26.0 47 0.0016 32.9 3.8 103 62-168 214-340 (578)
138 2a9v_A GMP synthase; structura 25.6 85 0.0029 26.9 5.0 70 77-152 15-92 (212)
139 3lft_A Uncharacterized protein 25.5 67 0.0023 27.9 4.4 110 63-177 120-246 (295)
140 2qxy_A Response regulator; reg 25.3 1.6E+02 0.0054 21.9 6.0 75 74-156 3-86 (142)
141 2j48_A Two-component sensor ki 25.1 1.8E+02 0.006 20.3 6.1 74 76-156 2-86 (119)
142 1o1y_A Conserved hypothetical 24.7 1.4E+02 0.0048 26.1 6.3 74 76-152 13-100 (239)
143 1l7b_A DNA ligase; BRCT, autos 24.6 83 0.0028 24.1 4.2 61 75-150 10-70 (92)
144 3eag_A UDP-N-acetylmuramate:L- 24.5 2.8E+02 0.0094 25.1 8.5 57 122-179 66-126 (326)
145 2iw1_A Lipopolysaccharide core 24.5 76 0.0026 27.9 4.5 72 75-151 228-300 (374)
146 3heb_A Response regulator rece 24.4 91 0.0031 23.8 4.5 26 75-100 4-29 (152)
147 3eul_A Possible nitrate/nitrit 24.3 97 0.0033 23.6 4.7 78 74-156 14-100 (152)
148 2qvg_A Two component response 24.2 1.7E+02 0.0058 21.7 6.0 78 74-156 6-100 (143)
149 1qdl_B Protein (anthranilate s 24.1 1.2E+02 0.0041 25.3 5.6 16 136-152 69-84 (195)
150 1qkk_A DCTD, C4-dicarboxylate 24.0 1.7E+02 0.006 22.2 6.1 75 75-156 3-86 (155)
151 2hsg_A Glucose-resistance amyl 23.9 86 0.0029 27.6 4.8 99 56-156 31-149 (332)
152 3fht_A ATP-dependent RNA helic 23.8 79 0.0027 28.4 4.6 104 60-183 252-361 (412)
153 4e7p_A Response regulator; DNA 23.7 1.2E+02 0.0039 23.2 5.0 76 76-156 21-105 (150)
154 3k4h_A Putative transcriptiona 23.6 82 0.0028 26.8 4.5 117 62-179 119-259 (292)
155 1je3_A EC005, hypothetical 8.6 23.6 35 0.0012 26.7 1.8 35 70-104 49-83 (97)
156 3bil_A Probable LACI-family tr 23.4 86 0.0029 28.1 4.7 35 121-156 121-155 (348)
157 1jvn_A Glutamine, bifunctional 23.3 1.9E+02 0.0066 28.8 7.7 34 120-153 42-87 (555)
158 2yq5_A D-isomer specific 2-hyd 23.2 3.4E+02 0.012 25.4 9.0 78 77-157 3-82 (343)
159 3miz_A Putative transcriptiona 23.1 77 0.0026 27.4 4.2 58 121-178 196-264 (301)
160 3bbl_A Regulatory protein of L 22.7 1E+02 0.0036 26.4 5.0 34 122-155 188-227 (287)
161 2iks_A DNA-binding transcripti 22.7 86 0.0029 26.9 4.5 44 121-165 75-119 (293)
162 1k68_A Phytochrome response re 22.7 1.7E+02 0.0058 21.3 5.6 76 75-156 2-96 (140)
163 1j5x_A Glucosamine-6-phosphate 22.6 4.2E+02 0.014 24.1 9.4 108 72-193 209-329 (342)
164 2k6g_A Replication factor C su 22.4 1.7E+02 0.0058 23.0 5.8 63 74-150 34-97 (109)
165 2uz1_A Benzaldehyde lyase; thi 22.4 1.4E+02 0.0048 29.3 6.4 73 61-136 193-283 (563)
166 3hzh_A Chemotaxis response reg 22.3 1.1E+02 0.0037 23.7 4.6 23 77-99 38-60 (157)
167 2ioj_A Hypothetical protein AF 22.2 2.7E+02 0.0093 21.9 7.1 30 122-151 74-104 (139)
168 3fij_A LIN1909 protein; 11172J 22.0 55 0.0019 29.0 3.1 19 134-152 97-115 (254)
169 3hhe_A Ribose-5-phosphate isom 22.0 1.5E+02 0.0052 27.1 6.1 76 65-169 32-107 (255)
170 4gim_A Pseudouridine-5'-phosph 21.6 1.6E+02 0.0054 28.2 6.3 26 121-146 249-287 (335)
171 3tqi_A GMP synthase [glutamine 21.4 1.1E+02 0.0037 30.4 5.4 74 75-152 10-89 (527)
172 3brq_A HTH-type transcriptiona 21.4 1.1E+02 0.0037 25.9 4.8 35 121-155 199-239 (296)
173 2q28_A Oxalyl-COA decarboxylas 21.4 1.3E+02 0.0046 29.3 6.0 71 62-134 201-282 (564)
174 3l49_A ABC sugar (ribose) tran 21.1 61 0.0021 27.7 3.1 120 63-182 112-263 (291)
175 3f6c_A Positive transcription 21.0 1.8E+02 0.0061 21.3 5.5 75 77-157 3-86 (134)
176 2ioy_A Periplasmic sugar-bindi 21.0 1.4E+02 0.0047 25.5 5.4 35 121-156 56-92 (283)
177 2cc0_A Acetyl-xylan esterase; 20.8 3.3E+02 0.011 22.5 7.7 77 15-103 45-122 (195)
178 3okp_A GDP-mannose-dependent a 20.7 1.1E+02 0.0038 26.9 4.9 31 120-150 270-308 (394)
179 2dyj_A Ribosome-binding factor 20.6 1E+02 0.0035 23.7 4.0 64 145-212 29-92 (95)
180 2rb4_A ATP-dependent RNA helic 20.5 84 0.0029 25.4 3.7 69 60-132 20-94 (175)
181 3g85_A Transcriptional regulat 20.3 55 0.0019 28.0 2.7 56 121-182 67-122 (289)
182 3cg0_A Response regulator rece 20.2 1.7E+02 0.006 21.4 5.3 77 74-156 8-93 (140)
183 3k9c_A Transcriptional regulat 20.2 1.6E+02 0.0056 25.2 5.8 114 63-178 115-251 (289)
184 3vue_A GBSS-I, granule-bound s 20.2 2.1E+02 0.007 28.1 7.1 31 120-150 399-430 (536)
No 1
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.5e-98 Score=705.76 Aligned_cols=287 Identities=76% Similarity=1.222 Sum_probs=240.8
Q ss_pred CCCCCCCCCcccCCcHHHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 021180 1 MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIV 80 (316)
Q Consensus 1 ~~~~~~~~~~~l~~ke~~i~~LLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~ILf 80 (316)
||+.+.+++++|+||++++++||++|+||||++|||+|++||||+|+||||||||+|||++|++|+++|++++++++|||
T Consensus 1 ~~~~~~~~~~~l~~ke~dv~kLLaAGvH~Gt~~wNpkM~pYIyg~RndGIhIIdL~kT~e~L~~Aa~~I~~i~~~~~ILf 80 (305)
T 3iz6_A 1 MAAEGGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIV 80 (305)
T ss_dssp CCSCCCSSCCCCSSCCSCCCCHHHHHHSSCBSCCCTTTTTSCCEEETTTEEECCHHHHHHHHHHHHHHHHHTTSSCCEEE
T ss_pred CCcccccccccccccHHHHHHHHHcCeeccCCcCCcCccccEEeeecCCceEECHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 88888888999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred EccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCc
Q 021180 81 QSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRY 160 (316)
Q Consensus 81 Vstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~ 160 (316)
||||+++|++|+|||+++|++||++||+|||||||++.+|++||+|||+||+.|||+|+||+++||||||||||||+|++
T Consensus 81 VgTk~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t~~f~ePdllvV~Dp~~d~qAI~EA~~lnIPtIALvDTnsdp~~ 160 (305)
T 3iz6_A 81 QSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRY 160 (305)
T ss_dssp ECCSHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTTSCSSCCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTSCGGG
T ss_pred EeCcHHHHHHHHHHHHHhCCccccCcccCCcccCcccccccCCceeEEeCcccchHHHHHHHHcCCCEEEEEcCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCCchhHHHHHHHHHHHHHHhhcCCCCCCCccceeecccccCcccccchhHHHH--hhhhhh-hhhcccCCC
Q 021180 161 VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEET--AAIDYA-TAEYNTNLT 237 (316)
Q Consensus 161 VD~pIP~NndS~~SI~Li~~lLaraVl~~rG~i~~~~~w~v~~dl~fyrdpee~e~~e~~~~--~~~~~~-~~~~~~~~~ 237 (316)
|||+|||||||.+||+||||+|+++||++||+++|+|||+|||||||||||||+||+||+++ +.+||+ ..+|.. .
T Consensus 161 VDy~IP~NDds~rSI~Li~~lLA~aVl~~rgtis~~~~w~v~pdl~fyrdpee~ek~~~~~~~~~~~~~~~~~~~~~--~ 238 (305)
T 3iz6_A 161 VDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAA--P 238 (305)
T ss_dssp CSEEEESCCSSTHHHHHHHHHHHHHHHHTTSSCCSCCCCCCCCSSSCCCCCCCSCSHHHHHHHHHHHHHHHSCCSSC--C
T ss_pred cceEEeCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCcccCceeeeeeChhhhhhhhhhhccccccchhhhhhhcc--c
Confidence 99999999999999999999999999999999999999999999999999999999999877 678885 448853 3
Q ss_pred CCCCCCCcccCCCCCCCCCC--CCCCC--CCCCCCCCCCCccCCCCCCCCCCCCCCCccccCCCCcCCCCCCCCCCCC
Q 021180 238 SGDQWPSQIADGGWAGGEVQ--KPIPG--VPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPP 311 (316)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (316)
++++|++ +|++++++ +++|+ +.+|+ ++++ ++ ++|||+|++|. +||+++++|.
T Consensus 239 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~-~~~~~~~~~~~------------~~~~~~~~~~ 294 (305)
T 3iz6_A 239 AADTWGG-----EWGTDAAAQPAAIPAQAGADWT-AAPA---PA-AGGWDTAAAPA------------PGWEQGSAPV 294 (305)
T ss_dssp CSSHHHH-----HHHHHHHHHHHCSCC---------------------------------------------------
T ss_pred ccccccc-----ccccccccccCCCCCCCCCCcc-cccC---cc-CCCcccCCCCC------------CCcccCCCCC
Confidence 7789965 79998774 23444 35996 3332 33 88999985542 2777755543
No 2
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=100.00 E-value=1.8e-88 Score=630.08 Aligned_cols=218 Identities=54% Similarity=0.908 Sum_probs=201.5
Q ss_pred CCcccCCcHHHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchh
Q 021180 8 APRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYG 87 (316)
Q Consensus 8 ~~~~l~~ke~~i~~LLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~ 87 (316)
.+++|+||++++++||+||+||||++|||+|++||||+|+||||||||+|||++|++|+++|++++++++|||||||+++
T Consensus 3 ~~~~l~~~e~~v~~lL~AGvH~G~~~wnpkM~~YIy~~R~nGIhIIdL~kT~~~L~~A~~~i~~i~~~~~vlfVgTk~~~ 82 (252)
T 3u5c_A 3 LPATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTFG 82 (252)
T ss_dssp CCSSCSCCHHHHHHHHHHTTTEECSSCCCTTCCCEEEEETTTEEEECHHHHHHHHHHHHHHHTTSSSGGGEEEEECSHHH
T ss_pred cchhcccCHHHHHHHHHCCeeccCCcCCcCchhheecccCCCcEEecHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCcHH
Confidence 47899999999999999999999999999999999999978999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecC
Q 021180 88 QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPA 167 (316)
Q Consensus 88 q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~ 167 (316)
|++|++||+++|++||++||+||+||||++.+|++||+|||+||+.|||||+||+++||||||||||||+|++|||+|||
T Consensus 83 q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~Dp~~d~~ai~EA~~l~IP~Ial~DTn~~p~~VD~~IP~ 162 (252)
T 3u5c_A 83 QRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPC 162 (252)
T ss_dssp HHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEESCTTTTHHHHHHHHTTTCCEEEEECTTCCCTTCSSEEEC
T ss_pred HHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEeCCccchHHHHHHHHcCCCEEEEEcCCCCcccCCEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhcCC-CCCCCccceeecccccCcccccchhHHHHhhh
Q 021180 168 NNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYREPEETKQAEEEETAAI 225 (316)
Q Consensus 168 NndS~~SI~Li~~lLaraVl~~rG~i-~~~~~w~v~~dl~fyrdpee~e~~e~~~~~~~ 225 (316)
||||.+||+||||+|+++|+++||++ ||+|||+|||||||||||||+||++++++..+
T Consensus 163 Ndds~~SI~Li~~~La~aVl~~rg~i~s~~~~w~v~~dl~fyrdpee~e~~~~~~~~~~ 221 (252)
T 3u5c_A 163 NNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTE 221 (252)
T ss_dssp CTTSTTHHHHHHHHHHHHHHSSSSSCCSSSCCCSSCGGGSSCCCC--------------
T ss_pred CCCCcchHHHHHHHHHHHHHHhcCCcCcCCCCCccCceeeeecCHHHHhhHHHhhhhcc
Confidence 99999999999999999999999999 69999999999999999999999887766333
No 3
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=3e-87 Score=633.59 Aligned_cols=268 Identities=53% Similarity=0.913 Sum_probs=190.3
Q ss_pred CcccCCcHHHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhH
Q 021180 9 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQ 88 (316)
Q Consensus 9 ~~~l~~ke~~i~~LLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q 88 (316)
.++|+|+++++++||++|+||||++|||+|++||||+|+||||||||+||+++|++|+++|+.++++++|||||||+++|
T Consensus 5 ~~~l~~~~~~~~~LL~AgvH~Gh~~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~~i~~~~~ILfVgTk~~aq 84 (295)
T 2zkq_b 5 LDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQ 84 (295)
T ss_dssp --------CCHHHHHHHTTTBCCSCCCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHSSCGGGEEEEECSHHHH
T ss_pred cccccccHHHHHHHHhcCEEecCCcCCccccceEEeecCCCCEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHH
Confidence 67999999999999999999999999999999999999779999999999999999999999779999999999999999
Q ss_pred HHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCC
Q 021180 89 RAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPAN 168 (316)
Q Consensus 89 ~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~N 168 (316)
++|++||+++|++||++||+||+||||++.+|++||+|||+||+.||+||+||+++||||||||||||||++||||||||
T Consensus 85 ~~V~k~A~~~g~~yv~~RWlgG~LTN~~t~~f~~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn~dp~~VDy~IP~N 164 (295)
T 2zkq_b 85 RAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCN 164 (295)
T ss_dssp HHHHHHHHHHCCEEEESSCCCC-CCCTTCSSCCCCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTCCCTTCSEEEESC
T ss_pred HHHHHHHHHhCCceecceEecccccCcccccccCCCeEEEeCCCcchhHHHHHHHhCCCEEEEecCCCCcccCCEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHhhcCCCCCCCccceeecccccCcccccchhHHHHhhh---hhhhhhcccCCCCCCCCCCc
Q 021180 169 NKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETAAI---DYATAEYNTNLTSGDQWPSQ 245 (316)
Q Consensus 169 ndS~~SI~Li~~lLaraVl~~rG~i~~~~~w~v~~dl~fyrdpee~e~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 245 (316)
|||.+||+||+|+|+++|+++||+++|++||+|||||||||||||+|++||++++.. ++...+.. .++.+|+..
T Consensus 165 dds~~SI~Li~~lla~aIl~~rg~i~~~~~w~v~~dlf~yrdpee~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 241 (295)
T 2zkq_b 165 NKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWT---APAPEFTAA 241 (295)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCCSSSSCCCCCCCCHHHHCCC---------------------------------------
T ss_pred CCccchHHHHHHHHHHHHHHhcCcccCCCCCcccchheeecCHHHhhhhhhhhhhhhcchhhhccccc---CCCcccccc
Confidence 999999999999999999999999999999999999999999999999987755322 22112222 245677654
Q ss_pred cc-CCCCCCCCCCCCCCC----CCCCCCCCCCCccCCCCCCCCCCC
Q 021180 246 IA-DGGWAGGEVQKPIPG----VPYFPEAAPAATVPLGGDGWDAVP 286 (316)
Q Consensus 246 ~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 286 (316)
+. ..+|+++++.+..+. ..+|.+ . + ..++|.+++
T Consensus 242 ~~~~~~w~~~~~~~~~~~~~~~~~~w~~-~-----~-~~~~w~~~~ 280 (295)
T 2zkq_b 242 QPEVADWSEGVQVPSVPIQQFPTEDWSA-Q-----P-STEDWSAAP 280 (295)
T ss_dssp ----------------------------------------------
T ss_pred ccccccccccccccccccccCCccCccc-c-----c-cccccccCC
Confidence 32 367887654432221 237852 2 1 257787653
No 4
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=100.00 E-value=6.5e-84 Score=599.78 Aligned_cols=222 Identities=62% Similarity=1.032 Sum_probs=195.2
Q ss_pred CCCCCCCCCcccCCcHHHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 021180 1 MATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIV 80 (316)
Q Consensus 1 ~~~~~~~~~~~l~~ke~~i~~LLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~ILf 80 (316)
|++++..+.++++|+++++++||+||+||||++|||+|++||||+|+||||||||+|||++|++|+++|+.++++++|||
T Consensus 30 ~~~~~~~~~~~l~~k~~~v~~LL~AgvH~Gh~~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~~~~~~~~iLf 109 (253)
T 3bch_A 30 MASGSSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSV 109 (253)
T ss_dssp ------------CCCHHHHHHHHHHTTTBCCSCCCGGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHTCSSGGGEEE
T ss_pred hhhccccCCccccCcHHHHHHHHHcCEEecCCcCCccccccEEeecCCCcEEEeHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 44444445789999999999999999999999999999999999997799999999999999999999997799999999
Q ss_pred EccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCc
Q 021180 81 QSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRY 160 (316)
Q Consensus 81 Vstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~ 160 (316)
||||+++|++|++||+++|++||++||+||+||||++..|++||+|||+||+.|++||+||+++||||||||||||||++
T Consensus 110 VgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn~dp~~ 189 (253)
T 3bch_A 110 ISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRY 189 (253)
T ss_dssp EECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTT
T ss_pred EeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEECCCccchHHHHHHHhCCCEEEEEcCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCCchhHHHHHHHHHHHHHHhhcCCCCCCCccceeecccccCcccccchhHHHH
Q 021180 161 VDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEET 222 (316)
Q Consensus 161 VD~pIP~NndS~~SI~Li~~lLaraVl~~rG~i~~~~~w~v~~dl~fyrdpee~e~~e~~~~ 222 (316)
|||||||||||.+||+|++|+|+++|+++||++++++||+|||||||||||||+||+||+++
T Consensus 190 VDy~IP~Ndds~~SI~Li~~lla~aIl~grg~i~~~~~w~v~~dlf~yrdpee~~~~~~~~~ 251 (253)
T 3bch_A 190 VDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAA 251 (253)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHHHHHHHHHTSSCSSSCCSSCGGGGCCC-------------
T ss_pred CceEeecCCcchhhHHHHHHHHHHHHHHhcCccCCCCCCccCceeeeecCHHHHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999987654
No 5
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=100.00 E-value=1.6e-83 Score=594.36 Aligned_cols=212 Identities=46% Similarity=0.821 Sum_probs=199.7
Q ss_pred ccCCcHHHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHH
Q 021180 11 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRA 90 (316)
Q Consensus 11 ~l~~ke~~i~~LLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~a 90 (316)
+|+|+++++++||+||+||||++|||+|++||||+|+||||||||+|||++|++|+++|+.++++++|||||||++++++
T Consensus 2 ~~~m~~~~~~~lL~AgvH~G~~~wnpkM~~YIy~~R~nGihIIdL~kT~~~L~~A~~~i~~i~~~~~iLfVgtk~~~~~~ 81 (241)
T 2xzm_B 2 ATQRKQDDIKRLLASNCHQATINLNNQMKRYISHKGVNGIHYINIEETWQKIKLAARVIAAVQHPEDVMVVCSRIYGQRA 81 (241)
T ss_dssp CCHHHHHHHHHHHHTTTTEECSCCCGGGTTTEEEECSSSCEEECHHHHHHHHHHHHHHHHHCSSGGGEEEECCSHHHHHH
T ss_pred cccccHHHHHHHHhcCeEeccCcCCCCCcccEeeeeCCCcEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 67899999999999999999999999999999999977999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcee-cCCccCCccCCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCC
Q 021180 91 VLKFAKYTHAHAI-AGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANN 169 (316)
Q Consensus 91 V~kfA~~tGa~~I-~grw~pGtLTN~~~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~Nn 169 (316)
|++||+++|++|| ++||+||+||||++..|++||+|||+||+.||+||+||+++||||||||||||||++|||||||||
T Consensus 82 V~~~A~~~g~~yv~~~RWlgG~LTN~~t~~~~~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn~~p~~VDy~IP~Nd 161 (241)
T 2xzm_B 82 AIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTDPRSDFQAIKEASYVNIPVIALCDSDSPLAYVDVVIPCNN 161 (241)
T ss_dssp HHHHHHHHTCBCCCCSSCCTTTTTCTTCTTCCCCSEEEESCTTTTHHHHHHHTTTTCCEEECCCSSSCCTTCCEECCSCC
T ss_pred HHHHHHHhCCEEeccccccCCcccCccccccCCCCEEEEECCCcchHHHHHHHHhCCCEEEEecCCCCcccccEEEeCCC
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhhcCCCCCCCccceeecccccCcccccchhHHHH
Q 021180 170 KGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEET 222 (316)
Q Consensus 170 dS~~SI~Li~~lLaraVl~~rG~i~~~~~w~v~~dl~fyrdpee~e~~e~~~~ 222 (316)
||.+||+|++|+|+++|+++||+++|+++|+|||||||||||||+|++||+++
T Consensus 162 ds~~SI~Li~~~la~ail~~rg~i~~~~~~~v~~dlf~~rdpee~~~~~~~~~ 214 (241)
T 2xzm_B 162 RSTESISMIYWMIAREVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEE 214 (241)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTSSCSSSCCCSCTTTTSCCCCC----------
T ss_pred cccchHHHHHHHHHHHHHHhhCccCCCCCCCcCcceeeecCHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999987655
No 6
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.4e-72 Score=509.74 Aligned_cols=192 Identities=40% Similarity=0.731 Sum_probs=187.8
Q ss_pred HHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHH
Q 021180 17 ADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAK 96 (316)
Q Consensus 17 ~~i~~LLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~ 96 (316)
+++++||+||+||||+++||+|++||||+|+||||||||+|||++|++|+++|+.+ ++++|||||||+++|++|+|||+
T Consensus 7 v~~~~lL~AgvH~Gh~~~np~M~~YIy~~r~~Gi~IIdL~kT~~~L~~A~~~i~~~-~~~~ilfV~tk~~~~~~V~k~A~ 85 (202)
T 3j20_B 7 VPLDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKF-EPQSILAVSVRLYGQKPVKKFGE 85 (202)
T ss_dssp THHHHHHHHTCSBCCSCCCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHS-CSSCEEEECCCTTTHHHHHHHHH
T ss_pred ccHHHHHhcCccccCCcCCCCccccEeeeeCCCCEEECHHHHHHHHHHHHHHHHhh-CCCeEEEEecChHHHHHHHHHHH
Confidence 58999999999999999999999999999978999999999999999999999988 89999999999999999999999
Q ss_pred HcCCceecCCccCCccCCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHH
Q 021180 97 YTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIG 176 (316)
Q Consensus 97 ~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~ 176 (316)
++|++||++||+||+||||++.+|++||+|||+||+.|||||+||+++||||||||||||||++|||||||||||.+||+
T Consensus 86 ~~g~~~v~~rw~gG~lTN~~~~~~~~Pdllvv~Dp~~d~~ai~EA~~l~IP~Ial~DTn~~p~~Vd~~IP~Ndds~~Si~ 165 (202)
T 3j20_B 86 VTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRADHQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALA 165 (202)
T ss_dssp HHSCCCCCSSCCSSSSSCSSSSSCCCCSEEEESCTTTSHHHHHHHHHHTCCEEEEECTTCCCTTCCEEEECCCSSHHHHH
T ss_pred HHCCceeCceecCCCcccHhHHhccCCCeEEEeCCccchHHHHHHHHcCCCEEEEEcCCCCccccCEEEeCCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccceeeccccc
Q 021180 177 CLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 209 (316)
Q Consensus 177 Li~~lLaraVl~~rG~i~~~~~w~v~~dl~fyr 209 (316)
|+||+|+++|+++||++|++.+|++++|.|.-+
T Consensus 166 Li~~~la~avl~~rg~i~~~~~~~~~~~~f~~~ 198 (202)
T 3j20_B 166 LIYWILAREILYNRGEIQSREDFKIPVEEFEMK 198 (202)
T ss_dssp HHHHHHHHHHHHHHTSSCSSSCCSSCTTTTSCC
T ss_pred HHHHHHHHHHHHhcCCcCCcCCCCCCHHHHhhh
Confidence 999999999999999999999999999998654
No 7
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=100.00 E-value=4.6e-72 Score=508.19 Aligned_cols=191 Identities=34% Similarity=0.615 Sum_probs=185.4
Q ss_pred HHHHHHHHcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHH
Q 021180 17 ADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAK 96 (316)
Q Consensus 17 ~~i~~LLaAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~ 96 (316)
+++++||+||+||||+++||+|++||||+|+||||||||+|||++|++|+++|+.+ ++++|||||||++++++|++||+
T Consensus 11 ~~~~~lL~AgvH~Gh~~~npkM~~YIy~~R~~gihIIdL~kT~~~L~~A~~~i~~i-~~~~iLfVgTk~~~~~~V~~~A~ 89 (208)
T 1vi6_A 11 VPPDDYLAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRY-EPSKILLVAARQYAHKPVQMFSK 89 (208)
T ss_dssp SCHHHHHHHTTTBCCSCCCTTTGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTTS-CGGGEEEEECSGGGHHHHHHHHH
T ss_pred hhHHHHHhcCeEEcCCcCCCCccceEEeeeCCCcEEEcHHHHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999977999999999999999999999999 99999999999999999999999
Q ss_pred HcCCceecCCccCCccCCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHH
Q 021180 97 YTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIG 176 (316)
Q Consensus 97 ~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~ 176 (316)
++|++||++||+||+||||++.+|++||+|||+||+.|++||+||+++||||||||||||||++|||||||||||.+||+
T Consensus 90 ~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn~~p~~Vd~~IP~Ndds~~SI~ 169 (208)
T 1vi6_A 90 VVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALA 169 (208)
T ss_dssp HHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHH
T ss_pred HhCCeeecCEECCCcccChhhHhhCCCCEEEEECCCcchhHHHHHHHhCCCEEEEeCCCCCccccCEEEeCCCCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccceeecccccCccc
Q 021180 177 CLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEE 213 (316)
Q Consensus 177 Li~~lLaraVl~~rG~i~~~~~w~v~~dl~fyrdpee 213 (316)
|+||+|+++|+++||+++ +||||+||||.++.
T Consensus 170 Li~~~la~ail~grg~~~-----~~~~d~f~~~~~~~ 201 (208)
T 1vi6_A 170 IVYWLLAREIAKIRGQDF-----TYSIEDFEAELEGG 201 (208)
T ss_dssp HHHHHHHHHHHHHHTCCC-----CCCHHHHSCCC---
T ss_pred HHHHHHHHHHHHHhCCCC-----CcChhheeeecCCC
Confidence 999999999999999997 89999999999774
No 8
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=100.00 E-value=2.1e-63 Score=463.64 Aligned_cols=180 Identities=28% Similarity=0.386 Sum_probs=170.1
Q ss_pred HHHHHHHHcCceeccc--cCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHH
Q 021180 17 ADIQMMLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLK 93 (316)
Q Consensus 17 ~~i~~LLaAgvHlG~~--~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~ILfVstr~~~q~aV~k 93 (316)
+++++||+||+||||+ +|||+|++||||+| ||||||||.+|+++|++|+++|..+ +++++|||||||++++++|++
T Consensus 5 i~~~~LL~AgvH~Gh~t~~wnpkM~~YIyg~R-ngihIIdL~kT~~~L~~A~~~i~~~a~~gg~iLfVgTk~~a~~~V~~ 83 (256)
T 2vqe_B 5 ITVKELLEAGVHFGHERKRWNPKFARYIYAER-NGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRM 83 (256)
T ss_dssp -CCCSTTCSSTTCCCBSSSCCGGGSTTEEEEE-TTEEEECHHHHHHHHHHHHHHHHHHHTTTCCEEEECCSSSSTTTTTT
T ss_pred ccHHHHHHcCeeeccCcCCCCCccccceeccc-CCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence 6789999999999985 79999999999999 6999999999999999999999996 899999999999999999999
Q ss_pred HHHHcCCceecCCccCCccCCcccc-----------------cc-----------------------------cCCceEE
Q 021180 94 FAKYTHAHAIAGRHTPGTFTNQMQT-----------------SF-----------------------------NEPRLLI 127 (316)
Q Consensus 94 fA~~tGa~~I~grw~pGtLTN~~~~-----------------~f-----------------------------~eP~llV 127 (316)
||++||++||++||+||+||||++. .| ++||+||
T Consensus 84 ~A~~~g~~yv~~RWlgG~LTN~~ti~~~i~~l~~le~~~~~g~f~~l~Kke~~~~~r~~~kL~k~lgGik~m~~~Pdll~ 163 (256)
T 2vqe_B 84 EAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIF 163 (256)
T ss_dssp TTTSSSCCEECSCCCTTTTTTHHHHHHHHHHHHHHHHHTTSTTSSCSCHHHHTTHHHHHHHHHHHSTTGGGCSSCCSEEE
T ss_pred HHHHhCCeeecCeeCCCcccCHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHHHHhhcCccccccCCCEEE
Confidence 9999999999999999999999874 22 6999999
Q ss_pred EeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHHHHHHHHhhcCCCCCCCc
Q 021180 128 LTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKW 199 (316)
Q Consensus 128 V~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lLaraVl~~rG~i~~~~~w 199 (316)
|+||+.|++||+||+++||||||||||||||++|||||||||||.+||.|++|+|+++|+++|+. +.++|
T Consensus 164 V~Dp~~e~~Ai~EA~~l~IPvIaivDTn~dp~~VdypIP~NDds~~sI~Li~~~la~ai~~g~~~--r~~~~ 233 (256)
T 2vqe_B 164 VVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGG--VVEPS 233 (256)
T ss_dssp ESCTTTTHHHHHHHHHTTCCCEECCCTTSCGGGCSEECCSCSSCHHHHHHHHHHHHHHHHTTTSC--CCCSC
T ss_pred EeCCccchHHHHHHHHcCCCEEEEecCCCCchhcceEeecCCchHHHHHHHHHHHHHHHHHHHhh--hhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999875 55555
No 9
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.7e-61 Score=445.17 Aligned_cols=175 Identities=25% Similarity=0.377 Sum_probs=166.9
Q ss_pred HHHHHHHHcCceecc--ccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHH
Q 021180 17 ADIQMMLAAEVHLGT--KNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLK 93 (316)
Q Consensus 17 ~~i~~LLaAgvHlG~--~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~ILfVstr~~~q~aV~k 93 (316)
+++++||+||+|||| ++|||+|++||||+| ||||||||.+|+++|++|+++|..+ +++++|||||||++++++|++
T Consensus 4 i~~~~lL~agvH~Gh~t~~wnpkM~~yIy~~R-ngihIIdL~kT~~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~ 82 (231)
T 3bbn_B 4 INLEEMMEAGVHFGHGTRKWNPRMSPYISAKC-KGIHIINLTRTARFLSEACDLVFDASSRGKQFLIVGTKNKAADSVAR 82 (231)
T ss_dssp CSSHHHHHTSSSSCCCSSCCCGGGGGGEEEEE-TTEEEECHHHHHHHTHHHHHHSHHHHTTTCCEEEECCCTTTHHHHHH
T ss_pred CCHHHHHHhCeEecCCcCcCCcccccceeccc-CCcEEeeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHH
Confidence 478999999999998 579999999999999 6999999999999999999999976 899999999999999999999
Q ss_pred HHHHcCCceecCCccCCccCCcccc-----cc-----------------------------------------cCCceEE
Q 021180 94 FAKYTHAHAIAGRHTPGTFTNQMQT-----SF-----------------------------------------NEPRLLI 127 (316)
Q Consensus 94 fA~~tGa~~I~grw~pGtLTN~~~~-----~f-----------------------------------------~eP~llV 127 (316)
+|+++|++||++||+||+||||++. +| ++||+||
T Consensus 83 ~A~~~g~~yv~~rWlgG~LTN~~ti~~~i~~~~~l~~~~~~g~~~~l~Kke~~~~~r~~~kl~k~lgGik~m~~~Pdll~ 162 (231)
T 3bbn_B 83 AAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVI 162 (231)
T ss_dssp HHHHHTCEECCSSCCSCSSSCHHHHHHHHHHHHHHHHSTTSTTTTTSCHHHHHHHHHHHHHHTTSTTSTTSCCSCCSEEE
T ss_pred HHHHhCCccccccccCCCCcCHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHhhhcccccccCCCEEE
Confidence 9999999999999999999999973 22 2799999
Q ss_pred EeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHHHHHHHHhhcC
Q 021180 128 LTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 192 (316)
Q Consensus 128 V~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lLaraVl~~rG~ 192 (316)
|+||+.|++||+||+++||||||||||||||++|||||||||||.+||.|++++|+++|+++|+.
T Consensus 163 v~Dp~~e~~ai~EA~~l~IPvIaivDTn~dp~~Vdy~IP~Ndds~~si~li~~~la~ai~~g~~~ 227 (231)
T 3bbn_B 163 IVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSS 227 (231)
T ss_dssp ESCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEECCCCSSSHHHHHHHHHHHHHHHHHTSSC
T ss_pred EeCCccccHHHHHHHHhCCCEEEEecCCCCccceeEEeeCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999864
No 10
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=100.00 E-value=2.5e-62 Score=447.30 Aligned_cols=168 Identities=29% Similarity=0.362 Sum_probs=161.2
Q ss_pred HHHcCceecccc--CCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHc
Q 021180 22 MLAAEVHLGTKN--CDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYT 98 (316)
Q Consensus 22 LLaAgvHlG~~~--~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I-~n~~~ILfVstr~~~q~aV~kfA~~t 98 (316)
||+||+||||++ |||+|++||||+| ||||||||++||++|++|+++|..+ +++++|||||||++++++|++||+++
T Consensus 1 lL~AgvH~Gh~~~~wnp~M~~yIy~~R-~gihIIdL~kT~~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~~A~~~ 79 (218)
T 3r8n_B 1 MLKAGVHFGHQTRYWNPKMKPFIFGAR-NKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSC 79 (218)
T ss_dssp CCCCSSCSCCCSSCCCGGGGGGBCCCT-TSSCCBCTTTSGGGTTTHHHHHHHHHHTTCCCCEECCCTTTTTTTTTHHHHS
T ss_pred CccccccccCCCCCCCCCccccccccc-CCceEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHHc
Confidence 689999999865 9999999999999 5999999999999999999999997 89999999999999999999999999
Q ss_pred CCceecCCccCCccCCcccc-----------------cc-----------------------------cCCceEEEeCCC
Q 021180 99 HAHAIAGRHTPGTFTNQMQT-----------------SF-----------------------------NEPRLLILTDPR 132 (316)
Q Consensus 99 Ga~~I~grw~pGtLTN~~~~-----------------~f-----------------------------~eP~llVV~DP~ 132 (316)
|++||++||+||+||||++. .| ++||+|||+||+
T Consensus 80 g~~yv~~rWlgG~LTN~~ti~~~i~~l~~le~~~~~~~f~~l~Kke~~~~~re~~kl~k~lgGik~m~~~Pdllvv~Dp~ 159 (218)
T 3r8n_B 80 DQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDAD 159 (218)
T ss_dssp SCCEECSSCCSSSSTTTTTTHHHHHHHHHHHTTTSSSSCSSSCTTTTTTTHHHHHHHHSSSSSSSSCSSCCCSCEEEETG
T ss_pred CCeeECCccCCCCccCHHHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHHHHHHhhccccccccCCCeEEecCcc
Confidence 99999999999999999873 13 589999999999
Q ss_pred CCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHHHHHHHHhh
Q 021180 133 TDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190 (316)
Q Consensus 133 ~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lLaraVl~~r 190 (316)
.|++||+||+++||||||||||||||++|||||||||||.+||+|++++|+++|+++|
T Consensus 160 ~e~~ai~Ea~~l~IP~IalvDTn~~p~~Vdy~IP~Ndds~~si~Li~~~la~ai~~g~ 217 (218)
T 3r8n_B 160 HEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGR 217 (218)
T ss_dssp GGHHHHHHHHHHTCCCEEECCSSSCCSSCSEECCSCSSSHHHHHHHHHHHHHHHSCSC
T ss_pred cccHHHHHHHHhCCCEEEEEeCcCCCcccceEeecCCccHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999876
No 11
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=95.88 E-value=0.065 Score=45.53 Aligned_cols=132 Identities=15% Similarity=0.115 Sum_probs=72.4
Q ss_pred cCHHHHHHHHH----HHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHc---------CCceecCCccCCc-------
Q 021180 53 INLGKTWEKLQ----MAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYT---------HAHAIAGRHTPGT------- 111 (316)
Q Consensus 53 INL~kT~ekL~----~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA~~t---------Ga~~I~grw~pGt------- 111 (316)
=+|.+|.+.|. .++..+.. +.+.++|.|+|...... +...|+.+. |...+ ...+.
T Consensus 14 ~~l~~t~~~l~~~i~~~~~~~~~~i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~~~~~~~g~~~~---~~~~~~~~~~a~ 89 (196)
T 2yva_A 14 QTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAA-NAQHFAASMINRFETERPSLPAI---ALNTDNVVLTAI 89 (196)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHTTCCEEEEESTHHHH-HHHHHHHHHHTCSSSCCCCCCEE---ESSCCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEeCchhhH-HHHHHHHHHhccccccCCCCceE---eecCchHHHHHH
Confidence 35667776543 34555554 57788999999986432 333444432 22111 11110
Q ss_pred --cCCcc-------cccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCC-CCCC-c---ceEE--ecCCCCC
Q 021180 112 --FTNQM-------QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPMR-Y---VDIG--IPANNKG 171 (316)
Q Consensus 112 --LTN~~-------~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~~-~---VD~p--IP~NndS 171 (316)
-.... .....+=|++|++...-+ ..+++.|+..|++||+|++.. +++. + .|+. +|++..+
T Consensus 90 ~~d~~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~~~~~ 169 (196)
T 2yva_A 90 ANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSA 169 (196)
T ss_dssp TTSTTGGGHHHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSCSCHH
T ss_pred hcCCCHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCCCChh
Confidence 00100 123466788888875444 447788999999999999974 3332 2 4555 4554444
Q ss_pred ch--hHHHHHHHHHHHHHH
Q 021180 172 KH--SIGCLFWLLARMVLQ 188 (316)
Q Consensus 172 ~~--SI~Li~~lLaraVl~ 188 (316)
.- +.-+++.+|...+.+
T Consensus 170 ~~~~~~l~~~~~L~~~~~~ 188 (196)
T 2yva_A 170 RIQEMHMLTVNCLCDLIDN 188 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 33 334455555555543
No 12
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=95.54 E-value=0.084 Score=44.44 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCchh---HHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC----
Q 021180 62 LQMAARVIVAIENPGDIIVQSARPYG---QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD---- 134 (316)
Q Consensus 62 L~~Aa~~I~~I~n~~~ILfVstr~~~---q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d---- 134 (316)
+.++++.| .+.++|.|+|..... +....++ .+.|-... ..+... .....+=|++|++...-+
T Consensus 27 i~~~~~~i---~~a~~I~i~G~G~S~~~A~~~~~~l-~~~g~~~~---~~~~~~----~~~~~~~d~vI~iS~sG~t~~~ 95 (186)
T 1m3s_A 27 ADQLADHI---LSSHQIFTAGAGRSGLMAKSFAMRL-MHMGFNAH---IVGEIL----TPPLAEGDLVIIGSGSGETKSL 95 (186)
T ss_dssp HHHHHHHH---HHCSCEEEECSHHHHHHHHHHHHHH-HHTTCCEE---ETTSTT----CCCCCTTCEEEEECSSSCCHHH
T ss_pred HHHHHHHH---HcCCeEEEEecCHHHHHHHHHHHHH-HhcCCeEE---EeCccc----ccCCCCCCEEEEEcCCCCcHHH
Confidence 44444444 344689999987532 2222233 23443221 122221 223456688888875544
Q ss_pred chhHHHhhhcCCCEEEEecC-CCCC-CcceEE--ecCCCCC-----------ch-----hHHHHHHHHHHHHHHhhcC
Q 021180 135 HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIG--IPANNKG-----------KH-----SIGCLFWLLARMVLQMRGT 192 (316)
Q Consensus 135 ~qaI~EAs~lnIPtIAL~DT-ds~~-~~VD~p--IP~NndS-----------~~-----SI~Li~~lLaraVl~~rG~ 192 (316)
..++++|+..|++||+|++. ++++ ++.|+. +|+.... .. +.-+++.+|...+...+|.
T Consensus 96 ~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~d~L~~~~~~~~~~ 173 (186)
T 1m3s_A 96 IHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFYDAVILKLMEKKGL 173 (186)
T ss_dssp HHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCSCC-----CCCCSSTTHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEeCCccccCCCCcccccccCccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34778999999999999996 4444 234544 4544332 11 3457788888888877765
No 13
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=95.40 E-value=0.23 Score=43.12 Aligned_cols=107 Identities=19% Similarity=0.177 Sum_probs=61.6
Q ss_pred HHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHH----HH-----cCCceecCCccCCccC---C----------ccc
Q 021180 61 KLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFA----KY-----THAHAIAGRHTPGTFT---N----------QMQ 117 (316)
Q Consensus 61 kL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA----~~-----tGa~~I~grw~pGtLT---N----------~~~ 117 (316)
.+..+++.+.. +.+.++|.|+|+..... +-..++ .+ .|...+.-. -++.+| | +..
T Consensus 49 ~i~~~~~~i~~~l~~~~~I~i~G~G~S~~-~A~~~a~~l~~~~~~~~~g~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~ 126 (212)
T 2i2w_A 49 AIQRAAVLLADSFKAGGKVLSCGNGGSHC-DAMHFAEELTGRYRENRPGYPAIAIS-DVSHISCVGNDFGFNDIFSRYVE 126 (212)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESTHHHH-HHHHHHHHHHHHHCTTSSSCSEEECC-CTTCGGGGSCCCSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHHHhhhcccCCCCeEEecC-ChHHhhHhhccCCHHHHHHHHHH
Confidence 45666666654 57888999999985443 222333 11 222211110 122222 1 011
Q ss_pred ccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCC-CCC-CcceEEecCCC
Q 021180 118 TSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPM-RYVDIGIPANN 169 (316)
Q Consensus 118 ~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~-~~VD~pIP~Nn 169 (316)
..+.+-|++|++...-+ ..++++|+..|++||+|++.. +++ ++.|+.|....
T Consensus 127 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~~ 184 (212)
T 2i2w_A 127 AVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPH 184 (212)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEECC
T ss_pred hcCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcCC
Confidence 22567788888875544 457789999999999999864 554 34566655543
No 14
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=94.98 E-value=0.11 Score=48.31 Aligned_cols=148 Identities=18% Similarity=0.222 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHH---HHcCC--ceecCCccCCcc---------CCcc--
Q 021180 54 NLGKTWEKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFA---KYTHA--HAIAGRHTPGTF---------TNQM-- 116 (316)
Q Consensus 54 NL~kT~ekL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA---~~tGa--~~I~grw~pGtL---------TN~~-- 116 (316)
.+.+|...|..++..+.. +.+.++|.|+|....+.-+..-+. .+.|. ..+.+-..+|.- ....
T Consensus 49 ai~~t~~~i~~~i~~i~~~l~~a~rI~~~G~G~S~~lA~~~a~~~~~~~g~~~~~~~~l~~~g~~a~~~a~e~~ed~~~~ 128 (306)
T 1nri_A 49 AIESCLPQISLAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSTEMVKGIIAGGECAIRHPVEGAEDNTKA 128 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEESHHHHHHHHHHHHHHHHHHCCCTTSEEEEETTCTHHHHSCCTTGGGCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEEEeccHhHHHHHHHHHhcccccCCCHHHHHHHHhcchHHHhhhhhcccCcHHH
Confidence 567777777777776665 578899999999865543332111 12232 111111122211 1111
Q ss_pred ------cccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCC-CCC-CcceEEecCCC-----------CCch
Q 021180 117 ------QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPM-RYVDIGIPANN-----------KGKH 173 (316)
Q Consensus 117 ------~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~-~~VD~pIP~Nn-----------dS~~ 173 (316)
...+.+-|++|++.-.-. ..+++.|+..|.+||+|++.. |++ ++.|+.|.... ++..
T Consensus 129 ~~~~l~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~~~g~E~~~~st~~~s~t 208 (306)
T 1nri_A 129 VLNDLQSIHFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIVGPEILTGSSRLKSGT 208 (306)
T ss_dssp HHHHHHHTTCCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEECCCCSCSSTTCTTTHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEcCCCCccccCcccchhHH
Confidence 113567788888874443 457788999999999999864 433 24677765542 1123
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCccceeec
Q 021180 174 SIGCLFWLLARMVLQMRGTIRPGHKWDVMVDL 205 (316)
Q Consensus 174 SI~Li~~lLaraVl~~rG~i~~~~~w~v~~dl 205 (316)
+..+++.+|...+....|..-. ..|.|+
T Consensus 209 a~~~vl~~L~~~~~~~~g~~~~----~~m~~~ 236 (306)
T 1nri_A 209 AQKMVLNMLTTASMILLGKCYE----NLMVDV 236 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTSCBT----TBCTTC
T ss_pred HHHHHHHHHHHHHHHHccHHHH----HHHhhh
Confidence 4457888898888887775533 235554
No 15
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=94.74 E-value=0.18 Score=43.44 Aligned_cols=113 Identities=14% Similarity=0.089 Sum_probs=63.3
Q ss_pred hhCCCcEEEEccCchhHHHHHHHHHH---cCCceecCCccCCccCCcccccccCCceEEEeCCCCC----chhHHHhhhc
Q 021180 72 IENPGDIIVQSARPYGQRAVLKFAKY---THAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (316)
Q Consensus 72 I~n~~~ILfVstr~~~q~aV~kfA~~---tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EAs~l 144 (316)
|.+.++|.|+|....+. +.+.|+.+ .|-... +..... ...+.+=|++|++.-.-+ ..+++.|+..
T Consensus 44 i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~---~~~~~~----~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~ 115 (200)
T 1vim_A 44 IDSARSIFVIGAGRSGY-IAKAFAMRLMHLGYTVY---VVGETV----TPRITDQDVLVGISGSGETTSVVNISKKAKDI 115 (200)
T ss_dssp HHHSSCEEEECSHHHHH-HHHHHHHHHHHTTCCEE---ETTSTT----CCCCCTTCEEEEECSSSCCHHHHHHHHHHHHH
T ss_pred HhcCCEEEEEEecHHHH-HHHHHHHHHHhcCCeEE---EeCCcc----ccCCCCCCEEEEEeCCCCcHHHHHHHHHHHHC
Confidence 44456899999875432 33344443 343221 112211 223556688888874444 3467888999
Q ss_pred CCCEEEEecCC-CCC-CcceEEe--cCCCCCc-----------h-----hHHHHHHHHHHHHHHhhcC
Q 021180 145 NIPTIAFCDTD-SPM-RYVDIGI--PANNKGK-----------H-----SIGCLFWLLARMVLQMRGT 192 (316)
Q Consensus 145 nIPtIAL~DTd-s~~-~~VD~pI--P~NndS~-----------~-----SI~Li~~lLaraVl~~rG~ 192 (316)
|++||+|++.. +++ ++.|+.| |+..... . ++-+++.+|...+...++.
T Consensus 116 g~~vI~IT~~~~s~La~~ad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~lld~L~~~~~~~~~~ 183 (200)
T 1vim_A 116 GSKLVAVTGKRDSSLAKMADVVMVVKGKMKQERDEILSQLAPLGTMFELTAMIFLDALVAEIMMQKHL 183 (200)
T ss_dssp TCEEEEEESCTTSHHHHHCSEEEECCSSCTTCCHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCChHHHhCCEEEEECCcccccCCcccccccccccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999864 444 2456555 4433321 1 2235666666666655543
No 16
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=94.65 E-value=0.43 Score=41.89 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=73.6
Q ss_pred HHHHHHHHHHH-h-hCCCcEEEEccCchh---HHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC-
Q 021180 61 KLQMAARVIVA-I-ENPGDIIVQSARPYG---QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD- 134 (316)
Q Consensus 61 kL~~Aa~~I~~-I-~n~~~ILfVstr~~~---q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d- 134 (316)
.|.++++.|.. . .+.++|.|+|....+ +.+..+|. +.|-.... ..++.+.......+.+=|++|++...-+
T Consensus 43 ~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~~A~~~~~~l~-~lg~~~~~--~~~~~~~~~~~~~~~~~DlvI~iS~SG~t 119 (220)
T 3etn_A 43 AYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFC-STGIPSVF--LHPSEAQHGDLGILQENDLLLLISNSGKT 119 (220)
T ss_dssp HHHHHHHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHHH-HTTCCEEE--CCTTGGGBTGGGGCCTTCEEEEECSSSCC
T ss_pred HHHHHHHHHHhHhhccCCEEEEEEecHHHHHHHHHHHHHH-hcCCcEEE--eCCHHHHHhhhccCCCCCEEEEEcCCCCC
Confidence 35566666655 2 457889999986543 22222332 23432211 1122222111233456688888875444
Q ss_pred ---chhHHHhhh--cCCCEEEEecC-CCCC-CcceEEecCCC--C----------CchhHHHHHHHHHHHHHHhhcC
Q 021180 135 ---HQPIKEAAL--GNIPTIAFCDT-DSPM-RYVDIGIPANN--K----------GKHSIGCLFWLLARMVLQMRGT 192 (316)
Q Consensus 135 ---~qaI~EAs~--lnIPtIAL~DT-ds~~-~~VD~pIP~Nn--d----------S~~SI~Li~~lLaraVl~~rG~ 192 (316)
..+++.|+. .|+++|+|++. +|++ ++.|+.|.... . |.-+.-+++.+|+-.+...+|.
T Consensus 120 ~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~e~~~~~~~~~~S~~~~l~lld~L~~~l~~~~g~ 196 (220)
T 3etn_A 120 REIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHPAEVCTLGMTPTTSTTVMTVIGDILVVQTMKRTEF 196 (220)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEECCCCCCCSTTSCSSSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEcCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 346788999 99999999986 4443 34566555432 1 1124456677788888777764
No 17
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=94.04 E-value=0.32 Score=40.55 Aligned_cols=113 Identities=17% Similarity=0.093 Sum_probs=63.2
Q ss_pred hhCCCcEEEEccCchhHHHHHHHHHH---cCCceecCCccCCccCCcccccccCCceEEEeCCCCC----chhHHHhhhc
Q 021180 72 IENPGDIIVQSARPYGQRAVLKFAKY---THAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (316)
Q Consensus 72 I~n~~~ILfVstr~~~q~aV~kfA~~---tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EAs~l 144 (316)
+.+.++|.|+|...... +...|+.+ .|-... ..+.. ....+.+=|++|++....+ ..++++|+..
T Consensus 37 i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~---~~~~~----~~~~~~~~d~vi~iS~sG~t~~~~~~~~~ak~~ 108 (180)
T 1jeo_A 37 IIKAKKIFIFGVGRSGY-IGRCFAMRLMHLGFKSY---FVGET----TTPSYEKDDLLILISGSGRTESVLTVAKKAKNI 108 (180)
T ss_dssp HHHCSSEEEECCHHHHH-HHHHHHHHHHHTTCCEE---ETTST----TCCCCCTTCEEEEEESSSCCHHHHHHHHHHHTT
T ss_pred HHhCCEEEEEeecHHHH-HHHHHHHHHHHcCCeEE---EeCCC----ccccCCCCCEEEEEeCCCCcHHHHHHHHHHHHC
Confidence 34456899999875332 22333332 443221 11111 1233456688887764443 3467889999
Q ss_pred CCCEEEEecCCCCC-CcceEEe--cCCCCC---ch-----hHHHHHHHHHHHHHHhhcC
Q 021180 145 NIPTIAFCDTDSPM-RYVDIGI--PANNKG---KH-----SIGCLFWLLARMVLQMRGT 192 (316)
Q Consensus 145 nIPtIAL~DTds~~-~~VD~pI--P~NndS---~~-----SI~Li~~lLaraVl~~rG~ 192 (316)
|+++|+|++...++ ++.|+.| |++.++ .. +.-+++.+|...+...+|.
T Consensus 109 g~~vi~IT~~~~sl~~~ad~~l~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~~~~~~~~ 167 (180)
T 1jeo_A 109 NNNIIAIVCECGNVVEFADLTIPLEVKKSKYLPMGTTFEETALIFLDLVIAEIMKRLNL 167 (180)
T ss_dssp CSCEEEEESSCCGGGGGCSEEEECCCCCBTTBCTTHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCChHHHhCCEEEEeCCcccccccchhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999864323 2355554 443221 22 2356677787777766654
No 18
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=94.02 E-value=0.24 Score=42.33 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=62.1
Q ss_pred CcEEEEccCchhHHHHHHHHHH---cCCceecCCccCCccCCcccccccCCceEEEeCCCCC----chhHHHhhhcCCCE
Q 021180 76 GDIIVQSARPYGQRAVLKFAKY---THAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPT 148 (316)
Q Consensus 76 ~~ILfVstr~~~q~aV~kfA~~---tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPt 148 (316)
++|.|+|...... +.+.|+.+ .|-.... ..+..+.........+=|++|++...-+ ..+++.|+..|+++
T Consensus 46 ~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~--~~~~~~~~~~~~~~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~v 122 (201)
T 3fxa_A 46 GKIVVAGCGTSGV-AAKKLVHSFNCIERPAVF--LTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTL 122 (201)
T ss_dssp SCEEEECCTHHHH-HHHHHHHHHHHTTCCEEE--CCHHHHTTTGGGGCCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEE
T ss_pred CcEEEEEecHHHH-HHHHHHHHHHhcCCcEEE--eCchHHHhhhhhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeE
Confidence 5899999875432 22233332 3432211 1111111111123456688888875444 35778899999999
Q ss_pred EEEecCC-CCC-CcceEEe--cCCCC----------CchhHHHHHHHHHHHHHHhhcC
Q 021180 149 IAFCDTD-SPM-RYVDIGI--PANNK----------GKHSIGCLFWLLARMVLQMRGT 192 (316)
Q Consensus 149 IAL~DTd-s~~-~~VD~pI--P~Nnd----------S~~SI~Li~~lLaraVl~~rG~ 192 (316)
|+|++.. |++ ++.|+.| |+... |..+.-+++.+|+..+...+|.
T Consensus 123 i~IT~~~~s~l~~~ad~~l~~~~~~e~~~~~~~~~~s~~~~l~~~d~L~~~l~~~~g~ 180 (201)
T 3fxa_A 123 IGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNY 180 (201)
T ss_dssp EEEESCTTSHHHHHCSEEEECCCSCCCSTTSCSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCChhHHhCCEEEEcCCCccccccCCCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999864 443 2455555 44322 2223445566677777666654
No 19
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=93.85 E-value=0.68 Score=40.19 Aligned_cols=109 Identities=23% Similarity=0.312 Sum_probs=64.6
Q ss_pred HHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHc---------CCceecCCccCC----------------ccCC
Q 021180 61 KLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYT---------HAHAIAGRHTPG----------------TFTN 114 (316)
Q Consensus 61 kL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA~~t---------Ga~~I~grw~pG----------------tLTN 114 (316)
.|.+|++.|.. +.+.++|.|+|...-+. .-..|+.+. |-..+. ++| .|..
T Consensus 31 ~i~~a~~~i~~al~~~~~I~i~G~G~S~~-~A~~~~~~l~~~~~~~r~g~~~~~---~~~d~~~~~a~~~d~~~~~~~~~ 106 (201)
T 3trj_A 31 AIAQAAKAMVSCLENGGKVLVCGNGSSGV-IAQHFTSKLLNHFEMERPPLPAIA---LTGDVATITAVGNHYGFSQIFAK 106 (201)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESTHHHH-HHHHHHHHHHC-------CCCEEE---TTSCHHHHHHHHHHTCGGGTTHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCcHhHH-HHHHHHHHhcCccCCCCCCCceEE---ccCChHHHHHhccCCCHHHHHHH
Confidence 46677777765 58899999999986543 223343332 322111 111 0111
Q ss_pred cccccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-cc---eEEecCCCCCch
Q 021180 115 QMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YV---DIGIPANNKGKH 173 (316)
Q Consensus 115 ~~~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~V---D~pIP~NndS~~ 173 (316)
+.....++=|++|++...-+ ..+++.|+..|++||+|++. ++++. +. |+.|....+...
T Consensus 107 ~l~~~~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~~~~~ 174 (201)
T 3trj_A 107 QVAALGNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPSDNIA 174 (201)
T ss_dssp HHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESCCCHH
T ss_pred HHHhhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCCCCch
Confidence 11112466788888875444 35778999999999999985 55543 34 666655554443
No 20
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=93.69 E-value=0.16 Score=42.70 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHH---HcCCceecCCccC---CccCCcccccccCCceEEEeCCCCC-
Q 021180 62 LQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAK---YTHAHAIAGRHTP---GTFTNQMQTSFNEPRLLILTDPRTD- 134 (316)
Q Consensus 62 L~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~---~tGa~~I~grw~p---GtLTN~~~~~f~eP~llVV~DP~~d- 134 (316)
|.++++.| .+.++|.|+|...... +...|+. +.|-... .++ ..+.. ....+.+=|++|++...-+
T Consensus 29 l~~~~~~i---~~a~~I~i~G~G~S~~-~a~~~~~~l~~~g~~~~---~~~~~~~~~~~-~~~~~~~~d~~i~iS~sG~t 100 (187)
T 3sho_A 29 IEAAVEAI---CRADHVIVVGMGFSAA-VAVFLGHGLNSLGIRTT---VLTEGGSTLTI-TLANLRPTDLMIGVSVWRYL 100 (187)
T ss_dssp HHHHHHHH---HHCSEEEEECCGGGHH-HHHHHHHHHHHTTCCEE---EECCCTHHHHH-HHHTCCTTEEEEEECCSSCC
T ss_pred HHHHHHHH---HhCCEEEEEecCchHH-HHHHHHHHHHhcCCCEE---EecCCchhHHH-HHhcCCCCCEEEEEeCCCCC
Confidence 33444444 3446899999875332 2222332 3343221 111 11111 1123456688888875444
Q ss_pred ---chhHHHhhhcCCCEEEEecC-CCCC-CcceEEecCCCC------CchhHHHHHHHHHHHHHH
Q 021180 135 ---HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPANNK------GKHSIGCLFWLLARMVLQ 188 (316)
Q Consensus 135 ---~qaI~EAs~lnIPtIAL~DT-ds~~-~~VD~pIP~Nnd------S~~SI~Li~~lLaraVl~ 188 (316)
..+++.|+..|+++|+|.|. ++++ ++.|+.|.+..+ |.-+.-+++.+|...+..
T Consensus 101 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~~~~~S~~~~~~l~d~L~~~~~~ 165 (187)
T 3sho_A 101 RDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAATRGVGHSLSPVGLIAVVNLLLAEIAV 165 (187)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECCCCCSSSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEecCCCCcccccHhHHHHHHHHHHHHHHH
Confidence 34678889999999999986 4444 345655544332 334455555555555443
No 21
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=93.63 E-value=1.9 Score=36.22 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHH---------cCCceecCCccCC-c--cC-------C-----
Q 021180 60 EKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKY---------THAHAIAGRHTPG-T--FT-------N----- 114 (316)
Q Consensus 60 ekL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA~~---------tGa~~I~grw~pG-t--LT-------N----- 114 (316)
+.+.++++.|.. +.+.++|.|+|...... +...++.. .|... ....+ . +| .
T Consensus 32 ~~i~~~~~~i~~~i~~~~~I~i~G~G~S~~-~A~~~~~~l~~~~~~~~~g~~~---~~~~~d~~~~~~~~~~~~~~~~~~ 107 (198)
T 2xbl_A 32 ATVRKVADACIASIAQGGKVLLAGNGGSAA-DAQHIAGEFVSRFAFDRPGLPA---VALTTDTSILTAIGNDYGYEKLFS 107 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSTHHHH-HHHHHHHHHHSCSSSCCCCCCE---EETTCCHHHHHHHHHHHCGGGTTH
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCcHhhH-HHHHHHHHHHhhhccCCCCCce---EEecCChHHHHHhhccCCHHHHHH
Confidence 456777777765 47778999999985443 33344432 12111 11211 0 00 0
Q ss_pred -cccccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCC-CcceEEecCCCC
Q 021180 115 -QMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPM-RYVDIGIPANNK 170 (316)
Q Consensus 115 -~~~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~-~~VD~pIP~Nnd 170 (316)
+......+=|++|++...-+ ..+++.|+..|++||+|++. ++++ ++.|+.|.....
T Consensus 108 ~~~~~~~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~ 170 (198)
T 2xbl_A 108 RQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSA 170 (198)
T ss_dssp HHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSCS
T ss_pred HHHHhhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCCC
Confidence 01112466788888875544 44778889999999999986 4444 345555544433
No 22
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=93.38 E-value=0.27 Score=41.05 Aligned_cols=112 Identities=17% Similarity=0.147 Sum_probs=59.0
Q ss_pred CcEEEEccCchhHHHHHHHHHHc---CCceecCCccCCccCCcccccccCCceEEEeCCCCC----chhHHHhhhcCCCE
Q 021180 76 GDIIVQSARPYGQRAVLKFAKYT---HAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPT 148 (316)
Q Consensus 76 ~~ILfVstr~~~q~aV~kfA~~t---Ga~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPt 148 (316)
++|.|+|...... +...|+.+. |-..+. ..++.+.......+.+=|++|++.-.-+ ..+++.|+..|+++
T Consensus 50 ~~I~i~G~G~S~~-~a~~~~~~l~~~g~~~~~--~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~v 126 (183)
T 2xhz_A 50 GKVVVMGMGASGH-IGRKMAATFASTGTPSFF--VHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPL 126 (183)
T ss_dssp SCEEEEECHHHHH-HHHHHHHHHHTTTCCEEE--CCTTHHHHHTSTTCCTTCEEEEECSSSCCHHHHHHHHHHHTTTCCE
T ss_pred CeEEEEeecHHHH-HHHHHHHHHHhcCceEEE--eCchHHhhhhhccCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCE
Confidence 5899999875432 334444443 322111 0111110000122456688888875444 34677889999999
Q ss_pred EEEecCC-CCC-CcceEEecCC--CC-------C---chhHHHHHHHHHHHHHHhh
Q 021180 149 IAFCDTD-SPM-RYVDIGIPAN--NK-------G---KHSIGCLFWLLARMVLQMR 190 (316)
Q Consensus 149 IAL~DTd-s~~-~~VD~pIP~N--nd-------S---~~SI~Li~~lLaraVl~~r 190 (316)
|+|++.. +++ ++.|+.|... .. . .-+.-+++.+|...+.+.+
T Consensus 127 i~IT~~~~s~la~~ad~~l~~~~~~e~~~~~~~~~~S~~~~~~~~d~L~~~~~~~~ 182 (183)
T 2xhz_A 127 ICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKAR 182 (183)
T ss_dssp EEEESCTTSHHHHHSSEEEECCCSCCSSTTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCChhHHhCCEEEEeCCCccccccCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 9999864 444 2456555433 21 1 1234455566665555443
No 23
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=93.09 E-value=1.1 Score=38.03 Aligned_cols=115 Identities=18% Similarity=0.179 Sum_probs=66.3
Q ss_pred CHHHHHHH----HHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHc---------CCceecCCccCC---ccC---
Q 021180 54 NLGKTWEK----LQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYT---------HAHAIAGRHTPG---TFT--- 113 (316)
Q Consensus 54 NL~kT~ek----L~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA~~t---------Ga~~I~grw~pG---tLT--- 113 (316)
+|.+|.+. |..+++.|.. +.+.++|.|+|.+.... +...|+.+. |...+ ...+ .+|
T Consensus 19 ~l~~t~~~l~~~i~~~~~~i~~~i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~~~~~~~g~~~~---~~~~~~~~~~~~~ 94 (199)
T 1x92_A 19 TKQQALEVLPPYIEQASLVMVNALLNEGKILSCGNGGSAG-DAQHFSSELLNRFERERPSLPAV---ALTTDSSTITSIA 94 (199)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHTTCCEEEECSTHHHH-HHHHHHHHHHTCSSSCCCCCCEE---ETTCCHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCchhHH-HHHHHHHHHhcCcccCCCCCceE---ecCCChhHHHHhh
Confidence 45555544 4456655554 57788999999986443 334455443 11111 1111 000
Q ss_pred ---Cc-------ccccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCC-CCC-Cc---ceEEecCCCCCc
Q 021180 114 ---NQ-------MQTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPM-RY---VDIGIPANNKGK 172 (316)
Q Consensus 114 ---N~-------~~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~-~~---VD~pIP~NndS~ 172 (316)
+. ......+=|++|++...-+ ..+++.|+..|++||+|++.. +++ ++ .|+.|.+.....
T Consensus 95 ~d~~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~~~ 172 (199)
T 1x92_A 95 NDYSYNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKIT 172 (199)
T ss_dssp HHTCGGGTTHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCSCH
T ss_pred cCccHHHHHHHHHHhCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCCCch
Confidence 00 0123567788888875544 447788999999999999864 343 23 677776655443
No 24
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=92.81 E-value=0.61 Score=43.89 Aligned_cols=137 Identities=18% Similarity=0.121 Sum_probs=72.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHhhC--CCcEEEEccCchhH--HHHHHHHHH-cCCceecCCccCCccCCcccccccCCceE
Q 021180 52 IINLGKTWEKLQMAARVIVAIEN--PGDIIVQSARPYGQ--RAVLKFAKY-THAHAIAGRHTPGTFTNQMQTSFNEPRLL 126 (316)
Q Consensus 52 IINL~kT~ekL~~Aa~~I~~I~n--~~~ILfVstr~~~q--~aV~kfA~~-tGa~~I~grw~pGtLTN~~~~~f~eP~ll 126 (316)
+=+|.+|+......-+++..|.+ ..+|.|+|+..... .....+..+ .|..... ..++-|.......+.+-|++
T Consensus 29 ~~~i~~t~~~~~~i~~~~~~i~~~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~--~~~~e~~~~~~~~l~~~dlv 106 (355)
T 2a3n_A 29 LTSAREIIAARQKAEQVADEIYQAGFSSLFFASVGGSLAPMMAINEFAKELTTLPVYV--EQAAELIHKGNKRLNKDSVV 106 (355)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHCCSCEEEEECGGGHHHHHHHHHHHHHHCCSCEEE--EEHHHHHHHCCTTCCTTCEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhCCCCEEEEEEccHHHHHHHHHHHHHHhhcCCeEEE--cCcHHHHhhchhcCCCCCEE
Confidence 33566666522222233334433 67899988864332 112223333 4543211 11111111111123677888
Q ss_pred EEeCCCCC----chhHHHhhhcCCCEEEEecCC-CCC-CcceEEecC--CCCCchhHHHHHHHHHHHHHHhhc
Q 021180 127 ILTDPRTD----HQPIKEAALGNIPTIAFCDTD-SPM-RYVDIGIPA--NNKGKHSIGCLFWLLARMVLQMRG 191 (316)
Q Consensus 127 VV~DP~~d----~qaI~EAs~lnIPtIAL~DTd-s~~-~~VD~pIP~--NndS~~SI~Li~~lLaraVl~~rG 191 (316)
|++...-+ ..+++.|+..|.+||+|++.. |++ +..|+.|.. ..++ .+-.+++.+|+-.++..+|
T Consensus 107 I~iS~SG~t~e~~~a~~~ak~~Ga~vi~IT~~~~S~La~~ad~~l~~~~~~~~-~~~~~~~~ll~~~l~~~~~ 178 (355)
T 2a3n_A 107 ITLSKSGDTKESVAIAEWCKAQGIRVVAITKNADSPLAQAATWHIPMRHKNGV-EYEYMLLYWLFFRVLSRNN 178 (355)
T ss_dssp EEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTCSEEEECCCSSCH-HHHHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEeCCCcch-hHHHHHHHHHHHHHHHHcC
Confidence 88886555 457889999999999999864 444 245555544 4443 2333445556666777766
No 25
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=92.69 E-value=0.5 Score=44.93 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=49.5
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhc-CCCEEEEecC-CCCCC-cceEEecCC--CC-C------chhHHHHHHHHH
Q 021180 120 FNEPRLLILTDPRTD----HQPIKEAALG-NIPTIAFCDT-DSPMR-YVDIGIPAN--NK-G------KHSIGCLFWLLA 183 (316)
Q Consensus 120 f~eP~llVV~DP~~d----~qaI~EAs~l-nIPtIAL~DT-ds~~~-~VD~pIP~N--nd-S------~~SI~Li~~lLa 183 (316)
..+-|++|++...-+ ..+++.|+.. |.++|+|+|. +|++. ..|+.|... .. + ..|.-+.+.+|+
T Consensus 95 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~~Ga~vIaIT~~~~S~La~~ad~~l~~~~~~E~~~~~t~s~ts~~~~l~ll~ 174 (373)
T 2aml_A 95 SSHLDLVIGISQSGQSTSTISALERVKKEASVPVVALTSDVTSEIAEFADITLDIGSGKERVGYVTKGFTATVLTLMLTG 174 (373)
T ss_dssp CTTCCEEEEECSSSCBHHHHHHHHHHHHHCCCCEEEEESCTTSGGGGGCSEEEECSCCCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHhCCCcEEEEECCCCChHHHhcCcceecCCCccccccccccHHHHHHHHHHHH
Confidence 467789888886555 4578889998 9999999986 45543 456655443 21 1 223334555677
Q ss_pred HHHHHhhcCCC
Q 021180 184 RMVLQMRGTIR 194 (316)
Q Consensus 184 raVl~~rG~i~ 194 (316)
..+.+.+|.++
T Consensus 175 ~~l~~~~g~~~ 185 (373)
T 2aml_A 175 LHFAYKTVQID 185 (373)
T ss_dssp HHHHHHTTSSC
T ss_pred HHHHHHhCCCC
Confidence 67777777664
No 26
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=92.60 E-value=1.4 Score=36.78 Aligned_cols=111 Identities=14% Similarity=0.190 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCce------ecCCccCC---ccCC-------------cc
Q 021180 60 EKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHA------IAGRHTPG---TFTN-------------QM 116 (316)
Q Consensus 60 ekL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~------I~grw~pG---tLTN-------------~~ 116 (316)
+.+.++++.|.. +.+.++|.|+|+..... +...|+......| +.....++ .+|. +.
T Consensus 26 ~~i~~~~~~i~~~l~~~~~I~i~G~G~S~~-~a~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 104 (188)
T 1tk9_A 26 GQIAKVGELLCECLKKGGKILICGNGGSAA-DAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV 104 (188)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESTHHHH-HHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHH-HHHHHHHHHhhhhccCCCCCceEeccCCchhHhhhhcCCCHHHHHHHHH
Confidence 567777777774 57788999999986442 3344553221100 00011111 1110 01
Q ss_pred cccccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-cceEEecCCCCC
Q 021180 117 QTSFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANNKG 171 (316)
Q Consensus 117 ~~~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~NndS 171 (316)
.....+=|++|++...-+ ..+++.|+..|++||+|++. ++++. +.|+.|......
T Consensus 105 ~~~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~~~~ 165 (188)
T 1tk9_A 105 EALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSDD 165 (188)
T ss_dssp HHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEESCSC
T ss_pred HHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeCCCC
Confidence 112466688888875444 34678889999999999985 45543 356655544333
No 27
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=92.20 E-value=0.91 Score=43.33 Aligned_cols=121 Identities=12% Similarity=0.029 Sum_probs=71.5
Q ss_pred hhCCCcEEEEccCchh--HHHHHHHHHH-cCCceecCCccCCccCCcccccccCCceEEEeCCCCC----chhHHHhhhc
Q 021180 72 IENPGDIIVQSARPYG--QRAVLKFAKY-THAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (316)
Q Consensus 72 I~n~~~ILfVstr~~~--q~aV~kfA~~-tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EAs~l 144 (316)
+.+..+|.|++...-. -.....+..+ .|..... ..++.|... ...+.+.+++|++...-+ ..+++.|+..
T Consensus 47 ~~~a~~I~i~G~GtS~~aa~~~~~~~~~~~g~~~~~--~~~se~~~~-~~~~~~~dlvI~iS~SGeT~e~l~a~~~ak~~ 123 (366)
T 3knz_A 47 ERGVTRIILTGSGTSYHGALTARTFMQRWCALPVDV--CWPFMLDDE-TLARSGKALVVGISQGGGSLSTLAAMERARNV 123 (366)
T ss_dssp HTTCCEEEEECCHHHHHHHHHHHHHHHHHHTSCEEE--ECGGGCCHH-HHHHSCSEEEEEEESSSCCHHHHHHHHHHHHT
T ss_pred hcCCCEEEEEEechHHHHHHHHHHHHHHHHCCCeEE--EcchHHHhh-ccCCCCCCEEEEEcCCCCCHHHHHHHHHHHHc
Confidence 4677889999886542 1222222222 4543211 223333221 123467788888865444 4588999999
Q ss_pred CCCEEEEecC-CCCC-CcceEEecCCCC---------CchhHHHHHHHHHHHHHHhhcCCCC
Q 021180 145 NIPTIAFCDT-DSPM-RYVDIGIPANNK---------GKHSIGCLFWLLARMVLQMRGTIRP 195 (316)
Q Consensus 145 nIPtIAL~DT-ds~~-~~VD~pIP~Nnd---------S~~SI~Li~~lLaraVl~~rG~i~~ 195 (316)
|++||+|++. +|++ +..|+.|+.+.. |..+--+++.+|+-.+.+.||.++.
T Consensus 124 Ga~~IaIT~~~~S~La~~aD~~l~~~~g~E~~~a~tks~tsql~~l~lLa~~l~~~~g~~~~ 185 (366)
T 3knz_A 124 GHITASMAGVAPATIDRAADYILTVPCGEETAGAKTKGYHCTVLNLMLLALAVAGQQQRLDG 185 (366)
T ss_dssp TCEEEEEESSSSCGGGGGCSEECCCCCCC------CTHHHHHHHHHHHHHHHHHHHTTCSCH
T ss_pred CCCEEEEECCCCChhhhhcCEEEecCCCccccccccHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 9999999975 6665 356777765422 2222334566777777777887653
No 28
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=91.19 E-value=0.69 Score=40.82 Aligned_cols=94 Identities=10% Similarity=0.075 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCce-ecCCccCCccCCc-------------------ccc
Q 021180 60 EKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHA-IAGRHTPGTFTNQ-------------------MQT 118 (316)
Q Consensus 60 ekL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~-I~grw~pGtLTN~-------------------~~~ 118 (316)
+.|.++++.|.. +.+.++|.|+|+..-.. +...|+.+.+... +.-...++.+.+. ...
T Consensus 26 ~~i~~a~~~l~~~i~~~~~I~i~G~G~S~~-~A~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~e~~~g~~~~~~~~~ 104 (243)
T 3cvj_A 26 QAIIKGAHLVSEAVMNGGRFYVFGSGHSHM-IAEEIYNRAGGLALVTAILPPELMLHERPNKSTYLERIEGLSKSYLKLH 104 (243)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESGGGHH-HHHHTSSSTTCBTTEEECCCGGGSSSSSTTHHHHHTTCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHHH-HHHHHHHHhccccccCcccchhhhccCCchhhhhhhhcccHHHHHHHHh
Confidence 567778888775 68888999999975443 3333333322110 0000122211110 012
Q ss_pred cccCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC
Q 021180 119 SFNEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT 154 (316)
Q Consensus 119 ~f~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT 154 (316)
.+.+=|++|++...-+ ..+++.|+..|++||+|++.
T Consensus 105 ~~~~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~ 144 (243)
T 3cvj_A 105 QVTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSM 144 (243)
T ss_dssp TCCTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECH
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 2466788888875444 44778899999999999986
No 29
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=90.27 E-value=1.8 Score=40.90 Aligned_cols=119 Identities=16% Similarity=0.140 Sum_probs=70.7
Q ss_pred hCCCcEEEEccCchhH--HHHHH-HHHHcCCceecCCccCCccCCccccccc-CCceEEEeCCCCC----chhHHHhhhc
Q 021180 73 ENPGDIIVQSARPYGQ--RAVLK-FAKYTHAHAIAGRHTPGTFTNQMQTSFN-EPRLLILTDPRTD----HQPIKEAALG 144 (316)
Q Consensus 73 ~n~~~ILfVstr~~~q--~aV~k-fA~~tGa~~I~grw~pGtLTN~~~~~f~-eP~llVV~DP~~d----~qaI~EAs~l 144 (316)
.+..+|.|++...-.. ..... |-+..|..... ..++.|. .....+. +.+++|++...-+ ..+++.|+..
T Consensus 32 ~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~--~~~se~~-~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~ 108 (352)
T 3g68_A 32 TNLKKIIITGSGTSYHSGVQVQPYLQNLLDIDVVK--MYPFMIT-EDTFKFDNENTLVVGVSQGGSSYSTYNAMKLAEDK 108 (352)
T ss_dssp SCCSEEEEECSHHHHHHHHHHHHHHHHHCSSEEEE--ECGGGCC-GGGGSSCCTTEEEEEEESSSCCHHHHHHHHHHHHT
T ss_pred cCCCEEEEEEeehHHHHHHHHHHHHHHHhCCcEEE--Ecchhhh-hcccCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHC
Confidence 4667899988865321 22222 33334543221 2233332 1222344 6788888765444 4588999999
Q ss_pred CCCEEEEecC-CCCCC-cceEEecCCC---------CCchhHHHHHHHHHHHHHHhhcCCC
Q 021180 145 NIPTIAFCDT-DSPMR-YVDIGIPANN---------KGKHSIGCLFWLLARMVLQMRGTIR 194 (316)
Q Consensus 145 nIPtIAL~DT-ds~~~-~VD~pIP~Nn---------dS~~SI~Li~~lLaraVl~~rG~i~ 194 (316)
|++||+|++. +|++. ..|+.|+.+. ++..+--+++.+|+-.+.+.||.++
T Consensus 109 ga~~iaIT~~~~S~La~~aD~~l~~~~g~E~~va~tksf~~ql~~l~~La~~l~~~~g~~~ 169 (352)
T 3g68_A 109 GCKIASMAGCKNALIDEISDYILTVNCGEEKSGAKTKGYYCTKLNLMLLGLQIAREKGIIS 169 (352)
T ss_dssp TCEEEEEESSTTCGGGGGCSEECCCCCCCCCCSSCSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCEEEEeCCCCChHHHhCCEEEEeCCCCCccccccHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999975 66654 4677776542 2222333456677778888888765
No 30
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=85.26 E-value=3.2 Score=35.95 Aligned_cols=96 Identities=5% Similarity=0.118 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccC-CccCCcccccccCCceEEEeC-CCCCch
Q 021180 60 EKLQMAARVIVA-IENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTP-GTFTNQMQTSFNEPRLLILTD-PRTDHQ 136 (316)
Q Consensus 60 ekL~~Aa~~I~~-I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~p-GtLTN~~~~~f~eP~llVV~D-P~~d~q 136 (316)
+.+.+|+++|.. +.+++.|-+.|+..-. ++...+-+ + .+|+-+ +.+.. ...+++=|.++|+. ...|..
T Consensus 22 ~~I~~AA~llaqai~~~g~IyvfG~Ghs~--~~~~e~~~-~----~e~l~~~~~~~~--~~~i~~~D~vii~S~Sg~n~~ 92 (170)
T 3jx9_A 22 DELFDVVRLLAQALVGQGKVYLDAYGEFE--GLYPMLSD-G----PDQMKRVTKIKD--HKTLHAVDRVLIFTPDTERSD 92 (170)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECGGGG--GGTHHHHT-S----TTCCTTEEECCT--TCCCCTTCEEEEEESCSCCHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcHH--HHHHHHHc-c----cCCccchhhhhh--cCCCCCCCEEEEEeCCCCCHH
Confidence 388999999975 6888999888887532 22222221 1 122211 11111 22577778877775 444443
Q ss_pred ---hHHHhhhcCCCEEEEec---CCCC-CCcceEE
Q 021180 137 ---PIKEAALGNIPTIAFCD---TDSP-MRYVDIG 164 (316)
Q Consensus 137 ---aI~EAs~lnIPtIAL~D---Tds~-~~~VD~p 164 (316)
...+|+..|+++|+|+. +++. .++.|++
T Consensus 93 ~ie~A~~ake~G~~vIaITs~~~~~~~~~~L~d~a 127 (170)
T 3jx9_A 93 LLASLARYDAWHTPYSIITLGDVTETLERSIAPLA 127 (170)
T ss_dssp HHHHHHHHHHHTCCEEEEESSCCCTTGGGSSSCEE
T ss_pred HHHHHHHHHHCCCcEEEEeCcchhccccCcHHHHH
Confidence 34688889999999999 3332 3566766
No 31
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=84.57 E-value=3.5 Score=38.33 Aligned_cols=116 Identities=12% Similarity=0.051 Sum_probs=61.2
Q ss_pred CCCcEEEEccCch---hHHHHHHHHHHc-CCceecCCccCCccCCcccccccCCceEEEeCCCCC----chhHHHhhhcC
Q 021180 74 NPGDIIVQSARPY---GQRAVLKFAKYT-HAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGN 145 (316)
Q Consensus 74 n~~~ILfVstr~~---~q~aV~kfA~~t-Ga~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EAs~ln 145 (316)
+..+|.|+++..- ++.+-.+|-+.. |..... ..+.-|.......+.+.+++|++...-+ ..+++.|+..|
T Consensus 24 ~~~~I~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~--~~~~e~~~~~~~~l~~~dlvI~iS~SG~T~e~l~a~~~ak~~G 101 (329)
T 3eua_A 24 TIDHVFFVACGGSSAIMYPSKYVFDRESKSINSDL--YSANEFIQRNPVQLGEKSLVILCSHSGNTPETVKAAAFARGKG 101 (329)
T ss_dssp CCCEEEEEECTHHHHTTHHHHHHHHHHCSSCEEEE--EEHHHHHHHCCTTCSTTEEEEEEESSSCCHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHHHhcCCCeEEE--EccHHHHhcCccCCCCCcEEEEEcCCCCCHHHHHHHHHHHHCC
Confidence 5678999888643 222222333333 433211 0111111111112456788888865544 45788999999
Q ss_pred CCEEEEecC-CCCCC-cceEEecCCC---CCchhHH-HHHHHHHHHHHHhhc
Q 021180 146 IPTIAFCDT-DSPMR-YVDIGIPANN---KGKHSIG-CLFWLLARMVLQMRG 191 (316)
Q Consensus 146 IPtIAL~DT-ds~~~-~VD~pIP~Nn---dS~~SI~-Li~~lLaraVl~~rG 191 (316)
+++|+|++. +|++. ..|+.|+.+. .+..+-. ..+.+|+-.+++.++
T Consensus 102 a~~iaIT~~~~S~La~~ad~~l~~~~g~e~~va~t~~~~l~~la~~l~~~~~ 153 (329)
T 3eua_A 102 ALTIAMTFKPESPLAQEAQYVAQYDWGDEALAINTNYGVLYQIVFGTLQVLE 153 (329)
T ss_dssp CEEEEEESCTTSHHHHHSSEEEECCCSTTCCGGGSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHhCCEEEEeCCCCccchhhHHHHHHHHHHHHHHHHhc
Confidence 999999975 55543 4677765443 2222222 133344445555555
No 32
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=82.20 E-value=6.5 Score=36.94 Aligned_cols=107 Identities=14% Similarity=0.092 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchh---HHHHHHHHHHc-CCceecCCccCCccCCcccccccCCceEEEeCCCCC-
Q 021180 60 EKLQMAARVIVAIENPGDIIVQSARPYG---QRAVLKFAKYT-HAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD- 134 (316)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~ILfVstr~~~---q~aV~kfA~~t-Ga~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d- 134 (316)
+.|..+++.|..=.+..+|.|+++..-. +.+-..|-+.. |..... ..++.|.......+.+-+++|++...-+
T Consensus 25 ~~i~~~~~~i~~~~~a~~I~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~--~~~~e~~~~~~~~l~~~dlvI~iS~SG~T 102 (347)
T 3fkj_A 25 ENARRIISDILGKQNIERVWFVGCGGSLTGFWPGKYFLDCEASKLAVGY--ITSNEFVHATPKALGKNSVVILASQQGNT 102 (347)
T ss_dssp HHHHHHHHHHHTTSCCCEEEEEESTHHHHTTHHHHHHHHHHCSSCEEEE--EEHHHHHHSCCTTCSTTEEEEEEESSSCC
T ss_pred HHHHHHHHHHHhhCCCCEEEEEEehHHHHHHHHHHHHHHHHhCCCeEEE--eCcHHHHhhCcCCCCCCCEEEEEeCCCCc
Confidence 4455566555421256789999886532 22222222223 433211 1111111111112456788888865544
Q ss_pred ---chhHHHhhhcCCCEEEEecC-CCCCC-cceEEecCC
Q 021180 135 ---HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPAN 168 (316)
Q Consensus 135 ---~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~N 168 (316)
..+++.|+..|++||+|++. +|++. ..|+.|+.+
T Consensus 103 ~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~ 141 (347)
T 3fkj_A 103 AETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQ 141 (347)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSTTCHHHHTCSEEEECB
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCCCChHHhhcCeEEEec
Confidence 45788999999999999975 55542 456665443
No 33
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=81.31 E-value=13 Score=34.77 Aligned_cols=94 Identities=17% Similarity=0.161 Sum_probs=54.8
Q ss_pred hCCCcEEEEccCch---hHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC----chhHHHhhhcC
Q 021180 73 ENPGDIIVQSARPY---GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGN 145 (316)
Q Consensus 73 ~n~~~ILfVstr~~---~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EAs~ln 145 (316)
.+..+|.|++...- ++.+-.+|-+..|..... ..+..++.+......+-+++|++...-+ ..+++.|+..|
T Consensus 40 ~~~~~I~i~G~G~S~~aa~~~~~~l~~~~g~~v~~--~~~~~~~~~~~~~~~~~dl~i~iS~SG~T~e~~~a~~~ak~~g 117 (334)
T 3hba_A 40 FKPKFVMIVGRGSSDHAGVFAKYLFEIEASIPTFA--AAPSVASVYGKTLKLAGGLVIVISQSGRSPDILAQARMAKNAG 117 (334)
T ss_dssp HCCSCEEEESSGGGCHHHHHHHHHHHHHHCCCEEE--CCHHHHHTSCCCCCCTTCEEEEEESSSCCHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHHHHhCCcEEE--EcchHHHHhcccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcC
Confidence 56788999887543 233333444446654321 0111111111222356678888765444 45889999999
Q ss_pred CCEEEEecC-CCCCC-cceEEecCC
Q 021180 146 IPTIAFCDT-DSPMR-YVDIGIPAN 168 (316)
Q Consensus 146 IPtIAL~DT-ds~~~-~VD~pIP~N 168 (316)
+++|+|++. +|++. ..|+.|+.+
T Consensus 118 ~~~i~IT~~~~S~la~~ad~~l~~~ 142 (334)
T 3hba_A 118 AFCVALVNDETAPIKDIVDVVIPLR 142 (334)
T ss_dssp CEEEEEESCTTSGGGGTSSEEEECC
T ss_pred CcEEEEeCCCCChHHHhcCEeeeec
Confidence 999999975 66654 456666543
No 34
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=80.11 E-value=15 Score=34.39 Aligned_cols=93 Identities=10% Similarity=0.021 Sum_probs=53.4
Q ss_pred hCCCcEEEEccCchhH--HHHHHHHH-HcCCceecCCccCCccCCcccccccCCceEEEeCCCCC----chhHHHhhhcC
Q 021180 73 ENPGDIIVQSARPYGQ--RAVLKFAK-YTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALGN 145 (316)
Q Consensus 73 ~n~~~ILfVstr~~~q--~aV~kfA~-~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EAs~ln 145 (316)
.+..+|.|++...-.. .....+.. ..|..... ..+...+........+.+++|++...-+ ..+++.|+..|
T Consensus 41 ~~~~~I~i~G~G~S~~aa~~~~~~l~~~~g~~~~~--~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G 118 (344)
T 3fj1_A 41 RDPSFVATVARGSSDHVCTYLSYAAELLLGLPVAS--LGPSVASVYDARLRLDRALCLAVSQSGKSPDIVAMTRNAGRDG 118 (344)
T ss_dssp HCCSEEEEECCTHHHHHHHHHHHHHHHHHCCCEEE--CCTHHHHTTCCCCCCTTEEEEEEESSSCCHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHHHHhCCcEEE--ecchHHhhhcccCCCCCcEEEEEcCCCCCHHHHHHHHHHHHCC
Confidence 5678899998875421 22222333 35543321 0111111111223456788888765444 45889999999
Q ss_pred CCEEEEecC-CCCCC-cceEEecC
Q 021180 146 IPTIAFCDT-DSPMR-YVDIGIPA 167 (316)
Q Consensus 146 IPtIAL~DT-ds~~~-~VD~pIP~ 167 (316)
.++|+|++. +|++. ..|+.|+.
T Consensus 119 a~~iaIT~~~~S~La~~ad~~l~~ 142 (344)
T 3fj1_A 119 ALCVALTNDAASPLAGVSAHTIDI 142 (344)
T ss_dssp CEEEEEESCTTSHHHHTSSEEEEC
T ss_pred CcEEEEECCCCChHHHhcCEeeec
Confidence 999999965 66553 45666554
No 35
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A*
Probab=79.85 E-value=3.7 Score=38.63 Aligned_cols=72 Identities=13% Similarity=0.240 Sum_probs=46.5
Q ss_pred ccCCceEEEeCCCCC----chhHHHhhhcC-CCEEEEecCC-CCCC-cceEEecCC--CC-------CchhHHHHHHHHH
Q 021180 120 FNEPRLLILTDPRTD----HQPIKEAALGN-IPTIAFCDTD-SPMR-YVDIGIPAN--NK-------GKHSIGCLFWLLA 183 (316)
Q Consensus 120 f~eP~llVV~DP~~d----~qaI~EAs~ln-IPtIAL~DTd-s~~~-~VD~pIP~N--nd-------S~~SI~Li~~lLa 183 (316)
..+-|++|++...-+ ..+++.|+..| +++|+|++.. |++. ..|+.|+.. .+ |..+.-+++.+|+
T Consensus 97 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G~a~viaIT~~~~S~La~~ad~~l~~~~~~e~~~a~t~s~~~~l~~l~~L~ 176 (368)
T 1moq_A 97 VRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLV 176 (368)
T ss_dssp CCTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCCeEEEEECCCCChHHHhCCEEEEcCCCCeecccchhhHHHHHHHHHHHH
Confidence 466788888875544 45788899999 9999999864 4442 355555443 21 2334445566666
Q ss_pred HHHHHhhc
Q 021180 184 RMVLQMRG 191 (316)
Q Consensus 184 raVl~~rG 191 (316)
-.+...+|
T Consensus 177 ~~l~~~~~ 184 (368)
T 1moq_A 177 AKLSRLKG 184 (368)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 67766666
No 36
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp}
Probab=79.83 E-value=3.6 Score=39.09 Aligned_cols=120 Identities=11% Similarity=0.223 Sum_probs=67.0
Q ss_pred hhCCCcEEEEccCch---hHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC----chhHHHhhhc
Q 021180 72 IENPGDIIVQSARPY---GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (316)
Q Consensus 72 I~n~~~ILfVstr~~---~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EAs~l 144 (316)
+.+..+|.|+++..- +.-+-..|.+..|..... ..++-|.. ......+.+++|++...-+ ..+++.|+..
T Consensus 51 l~~a~~I~i~G~GtS~~aa~~~~~~~~~~~g~~~~~--~~~se~~~-~~~~~~~~dlvI~iS~SG~T~e~l~al~~ak~~ 127 (372)
T 3tbf_A 51 FEKTKHICIVACGTSYNAGMTAKYWIEKYAKVPCSV--EIASEIRY-RDNVVVDGSLFVSISQSGETADTLESLRKSKKQ 127 (372)
T ss_dssp HHSCCEEEEEECHHHHHHHHHHHHHHHHHTCCCEEE--EEHHHHTT-SCCCCCTTEEEEEEESSSCCHHHHHHHHHHTTT
T ss_pred HhcCCEEEEEEechHHHHHHHHHHHHHHHhCCcEEE--echhHhhh-cccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHc
Confidence 356788999888654 222222233334432211 11222211 1123467788888875544 4578899999
Q ss_pred C-CCEEEEecC-CCCCC-cceEEecCC---CCC------chhHHHHHHHHHHHHHHhhcCCC
Q 021180 145 N-IPTIAFCDT-DSPMR-YVDIGIPAN---NKG------KHSIGCLFWLLARMVLQMRGTIR 194 (316)
Q Consensus 145 n-IPtIAL~DT-ds~~~-~VD~pIP~N---ndS------~~SI~Li~~lLaraVl~~rG~i~ 194 (316)
| +++|+|++. +|++. ..|+.|+.+ ..+ ..+.-+++.+|+-.+.+.||.++
T Consensus 128 G~a~~iaIT~~~~S~La~~aD~~l~~~~g~E~~~a~Tks~t~ql~~l~lL~~~l~~~~g~~~ 189 (372)
T 3tbf_A 128 NYVGSMCICNVPNSSLVRESDIAFMTKAGVEIGVASTKAFTTQLVALAIFTLVIAKLKNSLT 189 (372)
T ss_dssp TEEEEEEEESSSSSHHHHHSSEEEECCCCCCCBSSCSHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred CCceEEEEcCCCCChHHHhCCEeeeecCCccccchhhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9 999999965 55443 355555543 222 22234445667767777777765
No 37
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*
Probab=78.30 E-value=1.4 Score=41.89 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=33.1
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-cceEEecCC
Q 021180 121 NEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPAN 168 (316)
Q Consensus 121 ~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~N 168 (316)
.+=|++|++...-+ ..+++.|+..|++||+|++. +|++. ..|+.|...
T Consensus 106 ~~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~ 159 (375)
T 2zj3_A 106 FRDDVCFFLSQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHIN 159 (375)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHSSEEEECC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHHhCCEeeeec
Confidence 45567777765444 45788999999999999986 45442 356665543
No 38
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=77.00 E-value=7.8 Score=36.07 Aligned_cols=90 Identities=12% Similarity=0.023 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceec------CCccCCccCCcccccccCCceEEEeCCCC
Q 021180 60 EKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA------GRHTPGTFTNQMQTSFNEPRLLILTDPRT 133 (316)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~------grw~pGtLTN~~~~~f~eP~llVV~DP~~ 133 (316)
+.|..|+..+..-...-.+++|+..+.-...+++.++..|..+.. .-++.|+ ++.....+..-|++|+.....
T Consensus 210 ~~ll~A~~~l~~~~p~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~-~~dl~~~y~~aDv~vl~ss~~ 288 (374)
T 2xci_A 210 EIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDR-FGILKELYPVGKIAIVGGTFV 288 (374)
T ss_dssp HHHHHHHHHHHTTCTTCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCS-SSCHHHHGGGEEEEEECSSSS
T ss_pred HHHHHHHHHHHhhCCCcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECC-HHHHHHHHHhCCEEEECCccc
Confidence 455556555543222356788887665444667777777765431 1122332 222333466778777754332
Q ss_pred C--chhHHHhhhcCCCEEE
Q 021180 134 D--HQPIKEAALGNIPTIA 150 (316)
Q Consensus 134 d--~qaI~EAs~lnIPtIA 150 (316)
+ -+.+.||..+|+|+|+
T Consensus 289 e~gg~~~lEAmA~G~PVI~ 307 (374)
T 2xci_A 289 NIGGHNLLEPTCWGIPVIY 307 (374)
T ss_dssp SSCCCCCHHHHTTTCCEEE
T ss_pred CCCCcCHHHHHHhCCCEEE
Confidence 3 3779999999999996
No 39
>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*
Probab=76.66 E-value=3 Score=39.41 Aligned_cols=72 Identities=11% Similarity=0.055 Sum_probs=43.3
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecC-CCCCC-cceEEecCCC---CCc------hhHHHHHHHHHHH
Q 021180 121 NEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDT-DSPMR-YVDIGIPANN---KGK------HSIGCLFWLLARM 185 (316)
Q Consensus 121 ~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DT-ds~~~-~VD~pIP~Nn---dS~------~SI~Li~~lLara 185 (316)
.+=|++|++...-+ ..+++.|+..|++||+|++. +|++. ..|+.|.... .+. .+.-+++.+|+-.
T Consensus 96 ~~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~E~~~a~t~s~t~~l~~l~~L~~~ 175 (367)
T 2poc_A 96 FRDDTCVFVSQSGETADSILALQYCLERGALTVGIVNSVGSSMSRQTHCGVHINAGPEIGVASTKAYTSQYIALVMFALS 175 (367)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTSHHHHHSSEEEECCCCCCCSSSCSHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEcCCCCcccccccHHHHHHHHHHHHHHHH
Confidence 44567777765444 45788999999999999986 45442 3566655442 222 1333445556655
Q ss_pred HHHhhcC
Q 021180 186 VLQMRGT 192 (316)
Q Consensus 186 Vl~~rG~ 192 (316)
+...+|.
T Consensus 176 l~~~~~~ 182 (367)
T 2poc_A 176 LSNDSIS 182 (367)
T ss_dssp HTTTBST
T ss_pred HHHHcCc
Confidence 5544443
No 40
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=74.48 E-value=4.7 Score=36.12 Aligned_cols=107 Identities=8% Similarity=0.118 Sum_probs=57.4
Q ss_pred CccccCHHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEE
Q 021180 49 GIYIINLGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLI 127 (316)
Q Consensus 49 Gi~IINL~kT~ekL~~Aa~~I~~I-~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llV 127 (316)
.+-||=..++ |.+.+..+ +.+.+|.+|+.+. ...+.++++..+...+.+.|.++.|. .-++||
T Consensus 33 ~VLVVGgG~v------a~~ka~~Ll~~GA~VtVvap~~--~~~l~~l~~~~~i~~i~~~~~~~dL~--------~adLVI 96 (223)
T 3dfz_A 33 SVLVVGGGTI------ATRRIKGFLQEGAAITVVAPTV--SAEINEWEAKGQLRVKRKKVGEEDLL--------NVFFIV 96 (223)
T ss_dssp CEEEECCSHH------HHHHHHHHGGGCCCEEEECSSC--CHHHHHHHHTTSCEEECSCCCGGGSS--------SCSEEE
T ss_pred EEEEECCCHH------HHHHHHHHHHCCCEEEEECCCC--CHHHHHHHHcCCcEEEECCCCHhHhC--------CCCEEE
Confidence 4556666554 44445554 5678888888653 23456666655556555555554443 346666
Q ss_pred Ee--CCCCCchhHHHhhhcCCCEEEEecCCCCCCc----------ceEEecCCCCCch
Q 021180 128 LT--DPRTDHQPIKEAALGNIPTIAFCDTDSPMRY----------VDIGIPANNKGKH 173 (316)
Q Consensus 128 V~--DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~----------VD~pIP~NndS~~ 173 (316)
.. |+..|.+.-.+|. .|||+ -.+|.-...++ +.++|=.|-+|..
T Consensus 97 aAT~d~~~N~~I~~~ak-~gi~V-NvvD~p~~~~f~~Paiv~rg~l~iaIST~G~sP~ 152 (223)
T 3dfz_A 97 VATNDQAVNKFVKQHIK-NDQLV-NMASSFSDGNIQIPAQFSRGRLSLAISTDGASPL 152 (223)
T ss_dssp ECCCCTHHHHHHHHHSC-TTCEE-EC-----CCSEECCEEEEETTEEEEEECTTSCHH
T ss_pred ECCCCHHHHHHHHHHHh-CCCEE-EEeCCcccCeEEEeeEEEeCCEEEEEECCCCCcH
Confidence 54 3333444445555 99994 45554222222 4566666655554
No 41
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=69.91 E-value=0.23 Score=47.21 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCccCCCCCCCCCCCCCCCcc
Q 021180 261 PGVPYFPEAAPAATVPLGGDGWDAVPAPPMAA 292 (316)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (316)
+++.+|+++++ |+.||+.-.+|.+++
T Consensus 272 ~~~~~~~~~~~------~~~~~~~~~~~~~~~ 297 (305)
T 3iz6_A 272 PAAGGWDTAAA------PAPGWEQGSAPVPAA 297 (305)
T ss_dssp --------------------------------
T ss_pred ccCCCcccCCC------CCCCcccCCCCCCcC
Confidence 33557863332 366787776664443
No 42
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=66.08 E-value=11 Score=38.15 Aligned_cols=117 Identities=10% Similarity=0.144 Sum_probs=64.4
Q ss_pred hhCCCcEEEEccCchhH--HHHHHHHHH-cCCceecCCccCCccCCcccccccCCceEEEeCCCCC----chhHHHhhhc
Q 021180 72 IENPGDIIVQSARPYGQ--RAVLKFAKY-THAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD----HQPIKEAALG 144 (316)
Q Consensus 72 I~n~~~ILfVstr~~~q--~aV~kfA~~-tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d----~qaI~EAs~l 144 (316)
+.+.++|.|+++..-.. .....+..+ +|..... ..+.-+. .......+.|++|++...-+ ..+++.|+..
T Consensus 289 i~~~~~I~i~G~G~S~~~a~~~~~~~~~~~~~~~~~--~~~~e~~-~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~ 365 (608)
T 2bpl_A 289 LSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDV--EIASEFR-YRKSAVRRNSLMITLSQSGETADTLAGLRLSKEL 365 (608)
T ss_dssp HHHCCEEEEEECHHHHHHHHHHHHHHHHHSCCCEEE--EEHHHHT-TSCCCCCTTEEEEEEESSSCCHHHHHHHHHHHHT
T ss_pred hcCCCEEEEEEehHHHHHHHHHHHHHHHHhCCCEEE--EehhHhh-ccCCCCCCCCEEEEEeCCcCCHHHHHHHHHHHHc
Confidence 34557899988864322 222333333 4432211 1111110 11112456788888865444 4578899999
Q ss_pred C-CCEEEEecC-CCCCC-cceEEecCCC---------CCchhHHHHHHHHHHHHHHhhc
Q 021180 145 N-IPTIAFCDT-DSPMR-YVDIGIPANN---------KGKHSIGCLFWLLARMVLQMRG 191 (316)
Q Consensus 145 n-IPtIAL~DT-ds~~~-~VD~pIP~Nn---------dS~~SI~Li~~lLaraVl~~rG 191 (316)
| +++|+|++. +|++. ..|+.|.... +|..+.-+++.+|+-.+...+|
T Consensus 366 G~a~~IaIT~~~~S~La~~ad~~l~~~~~~E~~~a~t~s~t~~l~~~~lL~~~l~~~~~ 424 (608)
T 2bpl_A 366 GYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSKLKG 424 (608)
T ss_dssp TCSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCHHHHhcCEEEEecCCceeeecchHHHHHHHHHHHHHHHHHHHhcC
Confidence 9 999999886 44442 3555554432 1233444556667777766666
No 43
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=64.63 E-value=46 Score=30.00 Aligned_cols=58 Identities=10% Similarity=0.089 Sum_probs=38.6
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHH
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lL 182 (316)
+..|-||++....+...+.++...+||+|.+ |...+...+++... |......+....|
T Consensus 127 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~---D~~~~~~~a~~~L 184 (366)
T 3h5t_A 127 AAVDGVVIYSVAKGDPHIDAIRARGLPAVIA-DQPAREEGMPFIAP---NNRKAIAPAAQAL 184 (366)
T ss_dssp CCCSCEEEESCCTTCHHHHHHHHHTCCEEEE-SSCCSCTTCCEEEE---CHHHHTHHHHHHH
T ss_pred CCCCEEEEecCCCChHHHHHHHHCCCCEEEE-CCccCCCCCCEEEe---ChHHHHHHHHHHH
Confidence 6789999987766777888888899999965 66554344555433 3344444444443
No 44
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=61.19 E-value=18 Score=31.37 Aligned_cols=44 Identities=7% Similarity=0.015 Sum_probs=32.3
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEe
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (316)
+..|.||+.....+...++++...+||+|. +|++.+...+++..
T Consensus 65 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~-i~~~~~~~~~~~V~ 108 (288)
T 3gv0_A 65 GSADGVIISKIEPNDPRVRFMTERNMPFVT-HGRSDMGIEHAFHD 108 (288)
T ss_dssp TCCSEEEEESCCTTCHHHHHHHHTTCCEEE-ESCCCSSCCCEEEE
T ss_pred CCccEEEEecCCCCcHHHHHHhhCCCCEEE-ECCcCCCCCCcEEE
Confidence 578999998877677788899999999985 46655444455543
No 45
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=60.71 E-value=9.7 Score=30.01 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCc-ccccccCCceEEEeCCCCC-ch
Q 021180 59 WEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPRTD-HQ 136 (316)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~-~~~~f~eP~llVV~DP~~d-~q 136 (316)
...|..|++.+.. ...-+++++|..+.. ..+++.++..|.. -+| |.+.+. ...-++.-|++|+...... ..
T Consensus 17 ~~~li~a~~~l~~-~~~~~l~i~G~g~~~-~~~~~~~~~~~~~---v~~--g~~~~~~~~~~~~~adv~v~ps~~e~~~~ 89 (166)
T 3qhp_A 17 QSVLIKAVALSKY-KQDIVLLLKGKGPDE-KKIKLLAQKLGVK---AEF--GFVNSNELLEILKTCTLYVHAANVESEAI 89 (166)
T ss_dssp HHHHHHHHHTCTT-GGGEEEEEECCSTTH-HHHHHHHHHHTCE---EEC--CCCCHHHHHHHHTTCSEEEECCCSCCCCH
T ss_pred HHHHHHHHHHhcc-CCCeEEEEEeCCccH-HHHHHHHHHcCCe---EEE--eecCHHHHHHHHHhCCEEEECCcccCccH
Confidence 3444455444321 123457778876554 4566777777762 233 555432 2234677788777653222 45
Q ss_pred hHHHhhhcCC-CEEEEec
Q 021180 137 PIKEAALGNI-PTIAFCD 153 (316)
Q Consensus 137 aI~EAs~lnI-PtIAL~D 153 (316)
.+.||..+|+ |+|+-.+
T Consensus 90 ~~~Eama~G~vPvi~~~~ 107 (166)
T 3qhp_A 90 ACLEAISVGIVPVIANSP 107 (166)
T ss_dssp HHHHHHHTTCCEEEECCT
T ss_pred HHHHHHhcCCCcEEeeCC
Confidence 8899999997 9999433
No 46
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=59.68 E-value=21 Score=28.81 Aligned_cols=88 Identities=9% Similarity=-0.030 Sum_probs=51.6
Q ss_pred HHHHHHHHHHH--HhhCCCcEEEEccCch-hHHHHHHHHHHcCCceecCCccCCccCCc-ccccccCCceEEEeCCCCC-
Q 021180 60 EKLQMAARVIV--AIENPGDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPRTD- 134 (316)
Q Consensus 60 ekL~~Aa~~I~--~I~n~~~ILfVstr~~-~q~aV~kfA~~tGa~~I~grw~pGtLTN~-~~~~f~eP~llVV~DP~~d- 134 (316)
..|..|+..+. .-...-+++++|..+. ....++++++..+ +=+|+-|.+.+. ...-++.-|++|+......
T Consensus 53 ~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~----~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~ 128 (200)
T 2bfw_A 53 DVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG----NVKVITEMLSREFVRELYGSVDFVIIPSYFEPF 128 (200)
T ss_dssp HHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT----TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSS
T ss_pred HHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHHhcC----CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCc
Confidence 34455555543 2112346778887651 3345566777666 113424555532 2233567788877653322
Q ss_pred chhHHHhhhcCCCEEEE
Q 021180 135 HQPIKEAALGNIPTIAF 151 (316)
Q Consensus 135 ~qaI~EAs~lnIPtIAL 151 (316)
...+.||..+|+|+|+-
T Consensus 129 ~~~~~Ea~a~G~PvI~~ 145 (200)
T 2bfw_A 129 GLVALEAMCLGAIPIAS 145 (200)
T ss_dssp CHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHCCCCEEEe
Confidence 56789999999999986
No 47
>3c3j_A Putative tagatose-6-phosphate ketose/aldose isome; tagatose-6-phosphate ketose/aldose isomerase, structural GEN PSI, MCSG; 1.80A {Escherichia coli}
Probab=57.38 E-value=36 Score=32.11 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=28.1
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhc--CCCEEEEecCC-CCC
Q 021180 121 NEPRLLILTDPRTD----HQPIKEAALG--NIPTIAFCDTD-SPM 158 (316)
Q Consensus 121 ~eP~llVV~DP~~d----~qaI~EAs~l--nIPtIAL~DTd-s~~ 158 (316)
.+.+++|++...-+ ..+++.|+.. |.++|+|++.. |++
T Consensus 102 ~~~dlvI~iS~SG~T~e~l~a~~~ak~~~~ga~~iaIT~~~~S~L 146 (384)
T 3c3j_A 102 AHPLLLISFGRSGNSPESVAAVELANQFVPECYHLPITCNEAGAL 146 (384)
T ss_dssp TSCEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTTSHH
T ss_pred CCCeEEEEEeCCcCCHHHHHHHHHHHhhCCCCCEEEEECCCCCHH
Confidence 36688888875544 4577888888 99999999864 443
No 48
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=55.10 E-value=24 Score=33.74 Aligned_cols=91 Identities=12% Similarity=0.095 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCC-cccccccCCceEEEeCCCCCchhH
Q 021180 60 EKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTN-QMQTSFNEPRLLILTDPRTDHQPI 138 (316)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN-~~~~~f~eP~llVV~DP~~d~qaI 138 (316)
..|..|+..|..-....+++++|........+++.++..|...-.=+|+ |...+ .....++.-|++|+.....-...+
T Consensus 391 ~~li~a~~~l~~~~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~-g~~~~~~~~~~~~~adv~v~ps~~~~g~~~ 469 (568)
T 2vsy_A 391 PQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFM-PKLPHPQYLARYRHADLFLDTHPYNAHTTA 469 (568)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEE-CCCCHHHHHHHGGGCSEEECCSSSCCSHHH
T ss_pred HHHHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEee-CCCCHHHHHHHHhcCCEEeeCCCCCCcHHH
Confidence 3444454444332234567778833333455666777766431011244 33332 122335667887776655557789
Q ss_pred HHhhhcCCCEEEE
Q 021180 139 KEAALGNIPTIAF 151 (316)
Q Consensus 139 ~EAs~lnIPtIAL 151 (316)
.||..+|+|||++
T Consensus 470 lEAma~G~Pvv~~ 482 (568)
T 2vsy_A 470 SDALWTGCPVLTT 482 (568)
T ss_dssp HHHHHTTCCEEBC
T ss_pred HHHHhCCCCEEec
Confidence 9999999999995
No 49
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Probab=55.09 E-value=10 Score=35.25 Aligned_cols=93 Identities=12% Similarity=0.025 Sum_probs=49.1
Q ss_pred hhCCCcEEEEccCchh---HHHHHHHHHHcCCceecCCccCCccCCcccccc-cCCceEEEeCCCCC----chhHHHhhh
Q 021180 72 IENPGDIIVQSARPYG---QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSF-NEPRLLILTDPRTD----HQPIKEAAL 143 (316)
Q Consensus 72 I~n~~~ILfVstr~~~---q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f-~eP~llVV~DP~~d----~qaI~EAs~ 143 (316)
+.+.++|.|+|+..-. +.+-.++....|..... ..+..+ ......+ ..||++|++...-+ ..+++.|+.
T Consensus 49 l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~v~~--~~~~~~-~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~ 125 (342)
T 1j5x_A 49 KNLTDEVLFVGCGSSYNLALTISYYFERVLKIRTKA--IPAGEV-AFQKIPDLEERGLAFLFSRTGNTTEVLLANDVLKK 125 (342)
T ss_dssp ---CCEEEEEESTHHHHHHHHHHHHHHHHHCCEEEE--EEHHHH-HTTCSCCCCSSEEEEEECSSSCCHHHHHHHHHHHH
T ss_pred hCCCCEEEEEEchHHHHHHHHHHHHHHHhhCCeEEE--ECchHH-HhcCcccCCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4566789999987532 22222232325543211 112222 0111112 22488888876554 457889999
Q ss_pred cCCCEEEEecC-CCCCC-cceEEecC
Q 021180 144 GNIPTIAFCDT-DSPMR-YVDIGIPA 167 (316)
Q Consensus 144 lnIPtIAL~DT-ds~~~-~VD~pIP~ 167 (316)
.|+++|+|++. +|++. ..|+.|..
T Consensus 126 ~Ga~vIaIT~~~~S~La~~ad~~l~~ 151 (342)
T 1j5x_A 126 RNHRTIGITIEEESRLAKESDLPLVF 151 (342)
T ss_dssp TTEEEEEEESCTTSHHHHHSSEEEEC
T ss_pred CCCCEEEEECCCCCHHHHhcCEEEEc
Confidence 99999999986 44442 34544433
No 50
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=53.86 E-value=44 Score=28.60 Aligned_cols=42 Identities=14% Similarity=0.035 Sum_probs=29.3
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEE
Q 021180 122 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (316)
Q Consensus 122 eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (316)
..|.||+.....+...++++...+||+|.+ |++.+-..+++.
T Consensus 57 ~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V 98 (277)
T 3cs3_A 57 MVDGAIILDWTFPTKEIEKFAERGHSIVVL-DRTTEHRNIRQV 98 (277)
T ss_dssp TCSEEEEECTTSCHHHHHHHHHTTCEEEES-SSCCCSTTEEEE
T ss_pred cccEEEEecCCCCHHHHHHHHhcCCCEEEE-ecCCCCCCCCEE
Confidence 689999887665667788888899999876 554432234443
No 51
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=53.29 E-value=14 Score=34.10 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=26.9
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (316)
..||+||.+......-++.-|..++||+| +.+.|+
T Consensus 91 ~~PDvVi~~g~~~s~p~~laA~~~~iP~v-ihe~n~ 125 (365)
T 3s2u_A 91 LRPVCVLGLGGYVTGPGGLAARLNGVPLV-IHEQNA 125 (365)
T ss_dssp HCCSEEEECSSSTHHHHHHHHHHTTCCEE-EEECSS
T ss_pred cCCCEEEEcCCcchHHHHHHHHHcCCCEE-EEecch
Confidence 48999998877666666778899999998 445544
No 52
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=52.88 E-value=1.3e+02 Score=26.99 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC-
Q 021180 56 GKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD- 134 (316)
Q Consensus 56 ~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d- 134 (316)
.|-...|..|+..+..- .+-+++++|..+.. ..+++.++..|..- +=.|+| . .+....-+..-|++|+....+.
T Consensus 223 ~Kg~~~li~a~~~l~~~-~~~~l~i~G~g~~~-~~l~~~~~~~~l~~-~v~~~g-~-~~~~~~~~~~adv~v~ps~~e~~ 297 (394)
T 2jjm_A 223 VKRVQDVVQAFAKIVTE-VDAKLLLVGDGPEF-CTILQLVKNLHIED-RVLFLG-K-QDNVAELLAMSDLMLLLSEKESF 297 (394)
T ss_dssp GGTHHHHHHHHHHHHHS-SCCEEEEECCCTTH-HHHHHHHHTTTCGG-GBCCCB-S-CSCTHHHHHTCSEEEECCSCCSC
T ss_pred ccCHHHHHHHHHHHHhh-CCCEEEEECCchHH-HHHHHHHHHcCCCC-eEEEeC-c-hhhHHHHHHhCCEEEeccccCCC
Confidence 34445555555555432 34678888876543 34566666665321 112443 2 2333334567788877653222
Q ss_pred chhHHHhhhcCCCEEEEecCCCCCCcc
Q 021180 135 HQPIKEAALGNIPTIAFCDTDSPMRYV 161 (316)
Q Consensus 135 ~qaI~EAs~lnIPtIAL~DTds~~~~V 161 (316)
...+.||..+|+|+|+- |.....+.+
T Consensus 298 ~~~~~EAma~G~PvI~~-~~~~~~e~v 323 (394)
T 2jjm_A 298 GLVLLEAMACGVPCIGT-RVGGIPEVI 323 (394)
T ss_dssp CHHHHHHHHTTCCEEEE-CCTTSTTTC
T ss_pred chHHHHHHhcCCCEEEe-cCCChHHHh
Confidence 46789999999999986 444444444
No 53
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=52.60 E-value=45 Score=31.74 Aligned_cols=131 Identities=15% Similarity=0.112 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCc----------------------
Q 021180 55 LGKTWEKLQMAARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGT---------------------- 111 (316)
Q Consensus 55 L~kT~ekL~~Aa~~I~~I-~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGt---------------------- 111 (316)
|-.+--|+..--++|..+ +.+.+||++|.....-.+++.++...|-.|. -+.|+
T Consensus 104 l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~---RlDG~~~~~~~k~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 104 LAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIK---RYDGHSIKSAAAANDFSCTVHLFSSEG 180 (328)
T ss_dssp HHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEE---ESSSCCC-------CCSEEEEEEESSC
T ss_pred HHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceE---eCCCCchhhhhhcccCCceEEEEECCC
Confidence 334566777777888887 6777899999888888899998887655442 12222
Q ss_pred --cCCcccccccCCceEEEeCCCCCc-----hhH----HH--hhhcCCCEEEEecCCCCCCcceEEec--CCCCCchhHH
Q 021180 112 --FTNQMQTSFNEPRLLILTDPRTDH-----QPI----KE--AALGNIPTIAFCDTDSPMRYVDIGIP--ANNKGKHSIG 176 (316)
Q Consensus 112 --LTN~~~~~f~eP~llVV~DP~~d~-----qaI----~E--As~lnIPtIAL~DTds~~~~VD~pIP--~NndS~~SI~ 176 (316)
-.|.......-+|.||++|+.-|. |++ |. ......||+=|+=++|- +.+-.-+| .|.++ -.
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti-Eh~~l~~~~~~~~~~---~~ 256 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI-DHCRLFFGKKFDKNS---RE 256 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSH-HHHHHHHHHHTCTTC---HH
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH-HHHHHHccCCCCcch---HH
Confidence 122111125678999999965553 444 33 23457789988877663 22323332 34333 34
Q ss_pred HHHHHHHHHHHHhhcCC
Q 021180 177 CLFWLLARMVLQMRGTI 193 (316)
Q Consensus 177 Li~~lLaraVl~~rG~i 193 (316)
++..+++ ++...|..+
T Consensus 257 ~l~k~i~-a~v~lrd~~ 272 (328)
T 3hgt_A 257 YLENVTA-AMVILRDRL 272 (328)
T ss_dssp HHHHHHH-HHHHGGGST
T ss_pred HHHHHHH-HHHHHHhhh
Confidence 5555444 444456444
No 54
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=52.20 E-value=29 Score=30.20 Aligned_cols=58 Identities=10% Similarity=-0.000 Sum_probs=38.0
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHH
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lL 182 (316)
+..|-||+.....+...+.++...+||+|.+ |.+.+...+++... |...+..+....|
T Consensus 64 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~~---D~~~~~~~a~~~L 121 (294)
T 3qk7_A 64 RRVDALIVAHTQPEDFRLQYLQKQNFPFLAL-GRSHLPKPYAWFDF---DNHAGASLAVKRL 121 (294)
T ss_dssp TCCSEEEECSCCSSCHHHHHHHHTTCCEEEE-SCCCCSSCCEEEEE---CHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHHHHhCCCCEEEE-CCCCCCCCCCEEEc---ChHHHHHHHHHHH
Confidence 5789999987776668888999999999865 55444344555433 2344444444433
No 55
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=51.23 E-value=26 Score=26.15 Aligned_cols=49 Identities=10% Similarity=0.264 Sum_probs=33.8
Q ss_pred HHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCcc
Q 021180 64 MAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTF 112 (316)
Q Consensus 64 ~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtL 112 (316)
++.+.|..+..+..+.++.+.+...+-|.+||+..|..++...--+|.+
T Consensus 26 ~~kkal~~l~~G~~l~V~~dd~~a~~di~~~~~~~G~~~~~~~~~~~~~ 74 (82)
T 3lvj_C 26 MVRKTVRNMQPGETLLIIADDPATTRDIPGFCTFMEHELVAKETDGLPY 74 (82)
T ss_dssp HHHHHHHTSCTTCEEEEEECCTTHHHHHHHHHHHTTCEEEEEECSSSSE
T ss_pred HHHHHHHhCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEecCCEE
Confidence 3444455555555667888888888899999999998876543334433
No 56
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=50.74 E-value=36 Score=35.06 Aligned_cols=71 Identities=7% Similarity=0.027 Sum_probs=47.9
Q ss_pred CCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeC----CCCCc--------hhHHHhh
Q 021180 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD----PRTDH--------QPIKEAA 142 (316)
Q Consensus 75 ~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D----P~~d~--------qaI~EAs 142 (316)
+++|++|.........+.+.....|.....-++-- ......+|.|||+. +..+. ..|+++.
T Consensus 446 Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~-------~~~~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~ 518 (645)
T 3r75_A 446 GCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHD-------AVDLARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLI 518 (645)
T ss_dssp TCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTC-------CCCGGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCC-------cccccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHH
Confidence 45799999877666777777778887654333211 12235689999963 33332 3567788
Q ss_pred hcCCCEEEEe
Q 021180 143 LGNIPTIAFC 152 (316)
Q Consensus 143 ~lnIPtIAL~ 152 (316)
..++|+.|||
T Consensus 519 ~~~iPiLGIC 528 (645)
T 3r75_A 519 DEGKPFMAVC 528 (645)
T ss_dssp HHTCCEEEET
T ss_pred HCCCCEEEEC
Confidence 8899999997
No 57
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=49.99 E-value=34 Score=29.34 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=31.5
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCC-cceEE
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMR-YVDIG 164 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~-~VD~p 164 (316)
+..|.||+.....+...++++...+||+|.+ |++.+.. .+++.
T Consensus 68 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~~V 111 (292)
T 3k4h_A 68 RQIGGIILLYSRENDRIIQYLHEQNFPFVLI-GKPYDRKDEITYV 111 (292)
T ss_dssp TCCCEEEESCCBTTCHHHHHHHHTTCCEEEE-SCCSSCTTTSCEE
T ss_pred CCCCEEEEeCCCCChHHHHHHHHCCCCEEEE-CCCCCCCCCCCEE
Confidence 5789999988776778888899999999876 5554332 25554
No 58
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=49.64 E-value=27 Score=30.16 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=32.0
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEe
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (316)
+.+|.||+.....+...++++...+||+|.+ |++.+...+++.-
T Consensus 63 ~~vdgiIi~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~ 106 (291)
T 3egc_A 63 RRVDGLILAPSEGEHDYLRTELPKTFPIVAV-NRELRIPGCGAVL 106 (291)
T ss_dssp TTCSEEEECCCSSCCHHHHHSSCTTSCEEEE-SSCCCCTTCEEEE
T ss_pred CCCCEEEEeCCCCChHHHHHhhccCCCEEEE-ecccCCCCCCEEE
Confidence 5688898887766778888898999999965 5555433455543
No 59
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=49.04 E-value=42 Score=33.71 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=46.5
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeC-CC---------CCchhHHHhhh
Q 021180 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD-PR---------TDHQPIKEAAL 143 (316)
Q Consensus 74 n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D-P~---------~d~qaI~EAs~ 143 (316)
+..+|+++....+....|.+.-+..|.+...-++. +......-..||.||+.. |. .+...++.+..
T Consensus 6 ~~~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~----~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~ 81 (556)
T 3uow_A 6 EYDKILVLNFGSQYFHLIVKRLNNIKIFSETKDYG----VELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLE 81 (556)
T ss_dssp -CCEEEEEESSCTTHHHHHHHHHHTTCCEEEEETT----CCGGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHH
T ss_pred CCCEEEEEECCCccHHHHHHHHHHCCCeEEEEECC----CCHHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHHhhh
Confidence 34679999887766667777777888876443331 122222223688898886 21 12233444555
Q ss_pred cCCCEEEEec
Q 021180 144 GNIPTIAFCD 153 (316)
Q Consensus 144 lnIPtIAL~D 153 (316)
.++|+.|||-
T Consensus 82 ~g~PvLGIC~ 91 (556)
T 3uow_A 82 KKIPIFGICY 91 (556)
T ss_dssp TTCCEEEETH
T ss_pred cCCCEEEECH
Confidence 6999999983
No 60
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=49.00 E-value=22 Score=27.03 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhh-CCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccC
Q 021180 62 LQMAARVIVAIE-NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFT 113 (316)
Q Consensus 62 L~~Aa~~I~~I~-n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLT 113 (316)
+.++.+.|..+. .+..+.++.+.+...+-|.+||+..|-.+....--+|.++
T Consensus 15 vl~~kkal~~l~~~G~~L~V~~dd~~a~~dI~~~~~~~G~~v~~~~~~~g~~~ 67 (87)
T 3hz7_A 15 VIRAKKALAELGEAGGVVTVLVDNDISRQNLQKMAEGMGYQSEYLEKDNGVIE 67 (87)
T ss_dssp HHHHHHHHHTTGGGCCEEEEEESSHHHHHHHHHHHHHHTCEEEEEECGGGCEE
T ss_pred HHHHHHHHHhccCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEecCCEEE
Confidence 344555566675 6666778888899999999999999988765443445443
No 61
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=48.73 E-value=35 Score=29.73 Aligned_cols=57 Identities=9% Similarity=-0.144 Sum_probs=37.0
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHH
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 181 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~l 181 (316)
+..|-||+.....+...+.++...+||+|.+ |++.+...+++... |...+..+....
T Consensus 82 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~---D~~~~g~~a~~~ 138 (305)
T 3huu_A 82 KSVDGFILLYSLKDDPIEHLLNEFKVPYLIV-GKSLNYENIIHIDN---DNIDAAYQLTQY 138 (305)
T ss_dssp TCCSEEEESSCBTTCHHHHHHHHTTCCEEEE-SCCCSSTTCCEEEC---CHHHHHHHHHHH
T ss_pred CCCCEEEEeCCcCCcHHHHHHHHcCCCEEEE-CCCCcccCCcEEEe---CHHHHHHHHHHH
Confidence 5789999987666667888888999999865 55544444555433 234444444333
No 62
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=47.59 E-value=37 Score=29.31 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=26.3
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (316)
+..|.||+.....+...++++...+||+|.+ |++.
T Consensus 63 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~ 97 (287)
T 3bbl_A 63 GNVDGFVLSSINYNDPRVQFLLKQKFPFVAF-GRSN 97 (287)
T ss_dssp TCCSEEEECSCCTTCHHHHHHHHTTCCEEEE-SCCS
T ss_pred CCCCEEEEeecCCCcHHHHHHHhcCCCEEEE-CCcC
Confidence 5688888876655556788888889999977 5443
No 63
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=47.55 E-value=33 Score=29.88 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=27.5
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSP 157 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~ 157 (316)
+..|-||+.....+...+.++...+||+|.+ |.+.+
T Consensus 67 ~~vdGiI~~~~~~~~~~~~~l~~~~iPvV~i-~~~~~ 102 (295)
T 3hcw_A 67 RMVDAFILLYSKENDPIKQMLIDESMPFIVI-GKPTS 102 (295)
T ss_dssp TCCSEEEESCCCTTCHHHHHHHHTTCCEEEE-SCCCS
T ss_pred CCcCEEEEcCcccChHHHHHHHhCCCCEEEE-CCCCc
Confidence 5678898887666667788888999999866 55443
No 64
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=47.28 E-value=41 Score=29.15 Aligned_cols=43 Identities=5% Similarity=0.018 Sum_probs=28.2
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEE
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (316)
+..|.||+.....+...++++...+||+|.+ |+..+-..+++.
T Consensus 71 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V 113 (289)
T 2fep_A 71 KQVDGIVFMGGNITDEHVAEFKRSPVPIVLA-ASVEEQEETPSV 113 (289)
T ss_dssp TTCSEEEECCSCCCHHHHHHHHHSSSCEEEE-SCCCTTCCSCEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCEEEE-ccccCCCCCCEE
Confidence 4567788776555556788888889999977 554332234443
No 65
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=47.00 E-value=36 Score=28.88 Aligned_cols=43 Identities=12% Similarity=0.045 Sum_probs=29.1
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEE
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (316)
+..|.||+.....+...++++...+||+|.+ |+..+...+++.
T Consensus 58 ~~vdgii~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V 100 (275)
T 3d8u_A 58 SRPAGVVLFGSEHSQRTHQLLEASNTPVLEI-AELSSKASYLNI 100 (275)
T ss_dssp SCCCCEEEESSCCCHHHHHHHHHHTCCEEEE-SSSCSSSSSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE-eeccCCCCCCEE
Confidence 4678888876655556788888889999987 554332334443
No 66
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=45.77 E-value=45 Score=28.79 Aligned_cols=58 Identities=3% Similarity=-0.158 Sum_probs=34.7
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHH
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lL 182 (316)
+..|.||+.....+...++++...+||+|.+ |++.+-..+++.- .|......++...|
T Consensus 66 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~---~D~~~~g~~a~~~L 123 (290)
T 2rgy_A 66 RDCDGVVVISHDLHDEDLDELHRMHPKMVFL-NRAFDALPDASFC---PDHRRGGELAAATL 123 (290)
T ss_dssp TTCSEEEECCSSSCHHHHHHHHHHCSSEEEE-SSCCTTSGGGEEC---CCHHHHHHHHHHHH
T ss_pred cCccEEEEecCCCCHHHHHHHhhcCCCEEEE-ccccCCCCCCEEE---eCcHHHHHHHHHHH
Confidence 4678888876655556777888889999976 5544322344432 23344444444333
No 67
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=45.69 E-value=22 Score=26.01 Aligned_cols=48 Identities=8% Similarity=0.021 Sum_probs=32.6
Q ss_pred HHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccC
Q 021180 66 ARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFT 113 (316)
Q Consensus 66 a~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLT 113 (316)
.+.|..+..+..+.++.+.+...+-|.+||+..|..++...=.+|.+.
T Consensus 24 k~al~~l~~G~~L~V~~dd~~a~~di~~~~~~~G~~~~~~~~~~~~~~ 71 (78)
T 1pav_A 24 IKAYKQAKVGEVISVYSTDAGTKKDAPAWIQKSGQELVGVFDRNGYYE 71 (78)
T ss_dssp HHHHTTSCTTCCEECCBSSSCHHHHHHHHHHHHTEEECCCCCCSSCBC
T ss_pred HHHHHcCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEEeCCEEE
Confidence 334445545555667888888889999999999987765333455443
No 68
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=45.60 E-value=50 Score=27.68 Aligned_cols=34 Identities=9% Similarity=0.050 Sum_probs=25.2
Q ss_pred cCCceEEEeCCCC------------CchhHHHhhhcCCCEEEEecC
Q 021180 121 NEPRLLILTDPRT------------DHQPIKEAALGNIPTIAFCDT 154 (316)
Q Consensus 121 ~eP~llVV~DP~~------------d~qaI~EAs~lnIPtIAL~DT 154 (316)
..+|.||+..+.. ....|+++...++|+.|+|=-
T Consensus 41 ~~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G 86 (201)
T 1gpw_B 41 DLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLG 86 (201)
T ss_dssp SCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHH
T ss_pred cCCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChh
Confidence 5678888876532 235778887889999999953
No 69
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=45.38 E-value=1.1e+02 Score=29.72 Aligned_cols=98 Identities=11% Similarity=0.086 Sum_probs=53.0
Q ss_pred HHHHHHHh-hCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeC--CCCCchhHHHh
Q 021180 65 AARVIVAI-ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD--PRTDHQPIKEA 141 (316)
Q Consensus 65 Aa~~I~~I-~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D--P~~d~qaI~EA 141 (316)
|.+.+..+ +.+.+|.+|+.+.. ..+.+++...+...+.+.|.++.|. .-++||+.- +..|+....+|
T Consensus 24 a~~k~~~L~~~ga~V~vi~~~~~--~~~~~l~~~~~i~~~~~~~~~~~l~--------~~~lVi~at~~~~~n~~i~~~a 93 (457)
T 1pjq_A 24 AERKARLLLEAGARLTVNALTFI--PQFTVWANEGMLTLVEGPFDETLLD--------SCWLAIAATDDDTVNQRVSDAA 93 (457)
T ss_dssp HHHHHHHHHHTTBEEEEEESSCC--HHHHHHHTTTSCEEEESSCCGGGGT--------TCSEEEECCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCEEEEEcCCCC--HHHHHHHhcCCEEEEECCCCccccC--------CccEEEEcCCCHHHHHHHHHHH
Confidence 33333433 56677777776422 2334444434455555555554443 235555542 22367888999
Q ss_pred hhcCCCEEEEecCCCCCCc----------ceEEecCCCCCch
Q 021180 142 ALGNIPTIAFCDTDSPMRY----------VDIGIPANNKGKH 173 (316)
Q Consensus 142 s~lnIPtIAL~DTds~~~~----------VD~pIP~NndS~~ 173 (316)
...|||+- .+|.-...++ +.++|=.|-+|..
T Consensus 94 ~~~~i~vn-~~d~~e~~~~~~pa~~~~~~l~iaIsT~Gksp~ 134 (457)
T 1pjq_A 94 ESRRIFCN-VVDAPKAASFIMPSIIDRSPLMVAVSSGGTSPV 134 (457)
T ss_dssp HHTTCEEE-ETTCTTSSSEECCEEEEETTEEEEEECTTSCHH
T ss_pred HHcCCEEE-ECCCcccCceEeeeEEEeCCeEEEEECCCCChH
Confidence 99999952 2332111111 3677777777765
No 70
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=44.73 E-value=57 Score=28.40 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=29.4
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCCCCcce
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPMRYVD 162 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~~~~VD 162 (316)
+.+|.||+.....+ ...++++...+||+|.+ |++.+-..++
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~ 99 (313)
T 3m9w_A 57 RGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAY-DRMINDADID 99 (313)
T ss_dssp TTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEE-SSCCTTSCCS
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEE-CCcCCCCCce
Confidence 56898998876554 47889999999999876 5554444453
No 71
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=44.65 E-value=49 Score=29.65 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=45.0
Q ss_pred CCcEEEEcc-CchhHHHHHHHHHHcCCceecCCccCCc-cCCcccccccCCceEEEeCCCC---C--------chhHHHh
Q 021180 75 PGDIIVQSA-RPYGQRAVLKFAKYTHAHAIAGRHTPGT-FTNQMQTSFNEPRLLILTDPRT---D--------HQPIKEA 141 (316)
Q Consensus 75 ~~~ILfVst-r~~~q~aV~kfA~~tGa~~I~grw~pGt-LTN~~~~~f~eP~llVV~DP~~---d--------~qaI~EA 141 (316)
.++|++|-. ....-..+.++.+..|.....-+...|. +. .....+|.|||+.-.. | ...|+++
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p----~~~~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~ 78 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLP----AEIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDA 78 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCC----SCGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCc----CccccCCEEEECCCCCcccccchHHHHHHHHHHHH
Confidence 356777743 4345566777788888765333322221 21 1245679999986221 1 2456777
Q ss_pred hhcCCCEEEEe
Q 021180 142 ALGNIPTIAFC 152 (316)
Q Consensus 142 s~lnIPtIAL~ 152 (316)
...++|+++||
T Consensus 79 ~~~~~PvlGIC 89 (250)
T 3m3p_A 79 VAQRVPVIGHC 89 (250)
T ss_dssp HHHTCCEEEET
T ss_pred HHcCCCEEEEC
Confidence 78899999998
No 72
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=44.33 E-value=58 Score=27.71 Aligned_cols=43 Identities=5% Similarity=-0.055 Sum_probs=29.0
Q ss_pred cCCceEEEeCCCCCchhHHHhhh-cCCCEEEEecCCCCCCcceEE
Q 021180 121 NEPRLLILTDPRTDHQPIKEAAL-GNIPTIAFCDTDSPMRYVDIG 164 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~-lnIPtIAL~DTds~~~~VD~p 164 (316)
+..|.||+.....+...+.++.. .+||+|.+ |+..+-..+++.
T Consensus 76 ~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~-~~~~~~~~~~~V 119 (296)
T 3brq_A 76 LRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVL-NRRLRKNSSHSV 119 (296)
T ss_dssp TTCSEEEEECSSSCHHHHHHHHHTCSSCEEEE-SCCCSSSGGGEE
T ss_pred cCCCEEEEecCCCChHHHHHHHhcCCCCEEEE-ccccCCCCCCEE
Confidence 56888888766555567788877 89999876 554433334443
No 73
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=44.25 E-value=47 Score=28.78 Aligned_cols=36 Identities=31% Similarity=0.355 Sum_probs=27.0
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCC
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSP 157 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~ 157 (316)
+.+|.||+.....+ ...++++...|||+|.+ |++.+
T Consensus 60 ~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~-~~~~~ 97 (297)
T 3rot_A 60 TYPSGIATTIPSDTAFSKSLQRANKLNIPVIAV-DTRPK 97 (297)
T ss_dssp TCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEE-SCCCS
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEE-cCCCc
Confidence 46788888765555 67889999999999976 55444
No 74
>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding protein, NPPSFA, national on protein structural and functional analyses; 1.35A {Pyrococcus horikoshii} PDB: 2dec_A* 2df8_A 2cb0_A*
Probab=43.61 E-value=15 Score=33.88 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCCCCCCc-ceEEecCCC--------CCchhHHHHHHHHHHHH
Q 021180 122 EPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSPMRY-VDIGIPANN--------KGKHSIGCLFWLLARMV 186 (316)
Q Consensus 122 eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DTds~~~~-VD~pIP~Nn--------dS~~SI~Li~~lLaraV 186 (316)
.||++|++...-+ ..+++.|+ +++|+|++.+|++.. .|+.|.... +|..+.-+++.+|+..+
T Consensus 79 ~~dlvI~iS~SG~T~e~l~a~~~ak---a~viaIT~~~S~La~~ad~~l~~~~~e~~~a~t~s~~~~l~~l~~L~~~~ 153 (325)
T 2e5f_A 79 EVELAVGISRSGETTEILLALEKIN---VKKLGITTRESSLTRMCDYSLVVPAIEESVVMTHSFTSFYFAYLQLLRYS 153 (325)
T ss_dssp SCSEEEEECSSSCCHHHHHHHHTCC---SCEEEEESSSCHHHHHSSEEEECCCCCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHhC---CCEEEEECCCCHHHHhcCEEEecCCccceecccHHHHHHHHHHHHHHHHH
No 75
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=43.32 E-value=38 Score=30.00 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=25.7
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCC
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSP 157 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~ 157 (316)
+..|.|||.....+ ...++++...+||+|.+ |+..+
T Consensus 59 ~~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~-d~~~~ 96 (316)
T 1tjy_A 59 QGYDAIIVSAVSPDGLCPALKRAMQRGVKILTW-DSDTK 96 (316)
T ss_dssp TTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEE-SSCCC
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEe-cCCCC
Confidence 56788887654333 45788888899999987 55443
No 76
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=43.21 E-value=1.2e+02 Score=31.47 Aligned_cols=95 Identities=19% Similarity=0.208 Sum_probs=40.0
Q ss_pred HHHHHHHHH-HhhCCCcEEEEccCch----hHHHHHHHHHHcCC---ceecCCccCCccCC--cccccccCCceEEEeCC
Q 021180 62 LQMAARVIV-AIENPGDIIVQSARPY----GQRAVLKFAKYTHA---HAIAGRHTPGTFTN--QMQTSFNEPRLLILTDP 131 (316)
Q Consensus 62 L~~Aa~~I~-~I~n~~~ILfVstr~~----~q~aV~kfA~~tGa---~~I~grw~pGtLTN--~~~~~f~eP~llVV~DP 131 (316)
+.+|+..|. .|++..+|++++-... ..-++.++.+..|. +|+.+|+..|.=-| .+......+++||++|.
T Consensus 58 m~~Av~~i~~aI~~~ekI~I~GH~D~DGi~Saa~L~~~L~~lG~~v~~~ip~r~~egygl~~~~I~~~~~~~~LIItVD~ 137 (666)
T 2zxr_A 58 LREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLEASDLFLTVDC 137 (666)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEECCC--------------------CCEEEESCC
T ss_pred HHHHHHHHHHHHHcCCeEEEEeccCCchHHHHHHHHHHHHHcCCcEEEecCCCCCccccCCHHHHHhhccCCCEEEEEcC
Confidence 334444444 4688899999988731 23344566677775 34444543321111 11111245789999996
Q ss_pred CCC-chhHHHhhhcCCCEEEEecCCCC
Q 021180 132 RTD-HQPIKEAALGNIPTIAFCDTDSP 157 (316)
Q Consensus 132 ~~d-~qaI~EAs~lnIPtIAL~DTds~ 157 (316)
... +..+.++...++.+| ++|-..+
T Consensus 138 G~~s~~~i~~a~~~g~~VI-ViDHH~~ 163 (666)
T 2zxr_A 138 GITNHAELRELLENGVEVI-VTDHHTP 163 (666)
T ss_dssp C--------------CEEE-EECCCC-
T ss_pred CchhhhhHHHHHhCCCCEE-EECCcCC
Confidence 543 445666767788655 5675443
No 77
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=43.14 E-value=65 Score=27.07 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=24.4
Q ss_pred ccCCceEEEeCCCC------------CchhHHHhhhcCCCEEEEec
Q 021180 120 FNEPRLLILTDPRT------------DHQPIKEAALGNIPTIAFCD 153 (316)
Q Consensus 120 f~eP~llVV~DP~~------------d~qaI~EAs~lnIPtIAL~D 153 (316)
+..+|.||+..+.. ....|+++...++|+.|+|=
T Consensus 38 l~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~ 83 (200)
T 1ka9_H 38 HEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICV 83 (200)
T ss_dssp CSSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTH
T ss_pred cccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcH
Confidence 34567777765322 34678888888999999984
No 78
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=42.73 E-value=39 Score=29.28 Aligned_cols=57 Identities=18% Similarity=0.072 Sum_probs=36.0
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHH
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lL 182 (316)
+..|.||+.....+...+++... +||+|.+ |.+.+...+++...- ...+..+....|
T Consensus 65 ~~vdgiIi~~~~~~~~~~~~~~~-~iPvV~i-~~~~~~~~~~~V~~D---~~~~~~~a~~~L 121 (289)
T 3k9c_A 65 ERCEAAILLGTRFDTDELGALAD-RVPALVV-ARASGLPGVGAVRGD---DVAGITLAVDHL 121 (289)
T ss_dssp TTEEEEEEETCCCCHHHHHHHHT-TSCEEEE-SSCCSSTTSEEEEEC---HHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHc-CCCEEEE-cCCCCCCCCCEEEeC---hHHHHHHHHHHH
Confidence 56799999887777777888777 9999865 555443345554332 344444444433
No 79
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=42.65 E-value=41 Score=29.75 Aligned_cols=84 Identities=10% Similarity=0.067 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEE-EEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC
Q 021180 56 GKTWEKLQMAARVIVAIENPGDII-VQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD 134 (316)
Q Consensus 56 ~kT~ekL~~Aa~~I~~I~n~~~IL-fVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d 134 (316)
++-.+.|..|+..+.. +-+++ ++|..+. ..+++.++..|.. +=+|+ |.. +....-++.-|++|+.. .
T Consensus 196 ~k~~~~li~a~~~l~~---~~~~l~i~G~~~~--~~l~~~~~~~~~~--~v~~~-g~~-~~~~~~~~~ad~~v~~s-g-- 263 (364)
T 1f0k_A 196 RILNQTMPQVAAKLGD---SVTIWHQSGKGSQ--QSVEQAYAEAGQP--QHKVT-EFI-DDMAAAYAWADVVVCRS-G-- 263 (364)
T ss_dssp HHHHHHHHHHHHHHGG---GEEEEEECCTTCH--HHHHHHHHHTTCT--TSEEE-SCC-SCHHHHHHHCSEEEECC-C--
T ss_pred HHHHHHHHHHHHHhcC---CcEEEEEcCCchH--HHHHHHHhhcCCC--ceEEe-cch-hhHHHHHHhCCEEEECC-c--
Confidence 4444555555544432 33433 3555542 3455555555531 11233 322 33333455667776653 2
Q ss_pred chhHHHhhhcCCCEEEE
Q 021180 135 HQPIKEAALGNIPTIAF 151 (316)
Q Consensus 135 ~qaI~EAs~lnIPtIAL 151 (316)
...+.||..+|+|+|+.
T Consensus 264 ~~~~~EAma~G~Pvi~~ 280 (364)
T 1f0k_A 264 ALTVSEIAAAGLPALFV 280 (364)
T ss_dssp HHHHHHHHHHTCCEEEC
T ss_pred hHHHHHHHHhCCCEEEe
Confidence 78899999999999987
No 80
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=42.65 E-value=36 Score=26.54 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=32.9
Q ss_pred HHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCcc-CCcc
Q 021180 65 AARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHT-PGTF 112 (316)
Q Consensus 65 Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~-pGtL 112 (316)
+.+.|..+..+..+.++.+.+...+-|.+||+..|..++...-. +|.|
T Consensus 43 tkkaL~~l~~Ge~L~Vl~dd~~a~~dI~~~~~~~G~~v~~~e~~~~g~~ 91 (98)
T 1jdq_A 43 TKRALQNMKPGEILEVWIDYPMSKERIPETVKKLGHEVLEIEEVGPSEW 91 (98)
T ss_dssp HHHHHHTCCTTCEEEEEESSCTHHHHHHHHHHHSSCCEEEEEECSSSCE
T ss_pred HHHHHHhCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEEecCCEE
Confidence 34444555555567788888888899999999999877654333 3443
No 81
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=42.51 E-value=43 Score=30.08 Aligned_cols=89 Identities=9% Similarity=-0.012 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhh--CCCcEEEEccCch-hHHHHHHHHHHcCCceecCCccCCccCCcc-cccccCCceEEEeCCCCC
Q 021180 59 WEKLQMAARVIVAIE--NPGDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQM-QTSFNEPRLLILTDPRTD 134 (316)
Q Consensus 59 ~ekL~~Aa~~I~~I~--n~~~ILfVstr~~-~q~aV~kfA~~tGa~~I~grw~pGtLTN~~-~~~f~eP~llVV~DP~~d 134 (316)
.+.|..|+..+..-. ..-+++++|..+. ....+++.++..+ ...+..|.+.... ..-+..-|++|+..-...
T Consensus 267 ~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~----~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~ 342 (439)
T 3fro_A 267 VDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG----NVKVITEMLSREFVRELYGSVDFVIIPSYFEP 342 (439)
T ss_dssp HHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT----TEEEECSCCCHHHHHHHHTTCSEEEECBSCCS
T ss_pred HHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcC----CEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCC
Confidence 445555555554421 3456778887653 2355667777777 2233456444432 233567788777653322
Q ss_pred -chhHHHhhhcCCCEEEE
Q 021180 135 -HQPIKEAALGNIPTIAF 151 (316)
Q Consensus 135 -~qaI~EAs~lnIPtIAL 151 (316)
...+.||..+|+|+|+-
T Consensus 343 ~~~~~~EAma~G~Pvi~s 360 (439)
T 3fro_A 343 FGLVALEAMCLGAIPIAS 360 (439)
T ss_dssp SCHHHHHHHHTTCEEEEE
T ss_pred ccHHHHHHHHCCCCeEEc
Confidence 46789999999999995
No 82
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=42.48 E-value=1.6e+02 Score=27.62 Aligned_cols=114 Identities=13% Similarity=0.130 Sum_probs=65.1
Q ss_pred hCCCcEEEEccCch---hHHHHHHHHHHcCCc---eecCCccCCccCCcccccccCCc-eEEEeCCCCC---chhHHHhh
Q 021180 73 ENPGDIIVQSARPY---GQRAVLKFAKYTHAH---AIAGRHTPGTFTNQMQTSFNEPR-LLILTDPRTD---HQPIKEAA 142 (316)
Q Consensus 73 ~n~~~ILfVstr~~---~q~aV~kfA~~tGa~---~I~grw~pGtLTN~~~~~f~eP~-llVV~DP~~d---~qaI~EAs 142 (316)
.+..+++|+|+... ..+.-+|+-+-+..+ |-.+-|..|.+- .-.++ .||++.+..+ ...++|..
T Consensus 221 ~~~~~~~~lGrG~~~~~A~EgALKlkE~s~i~ae~~~a~E~~HGP~a------lid~~~pvi~~~~~~~~~~~~~~~~l~ 294 (366)
T 3knz_A 221 RDSADIRLTGPATLFGTVQEGALKMLETLRCPVSGYEFEEFIHGIYN------AFNAQSALIMLDPQPDARQDRLAQILG 294 (366)
T ss_dssp HTCSEEEEEECGGGHHHHHHHHHHHHHHHCSCEEEEEHHHHHHTHHH------HCCTTEEEEEECSSCCHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCHHHHHHHHHHHHHHhcccceeechhhcCcCchh------hhCCCceEEEEecCchHHHHHHHHHHH
Confidence 46678999999754 455666666655432 233445555331 12222 3555565433 35677888
Q ss_pred hcCCCEEEEecCCCCCCcceEEecCCCCCchh-H--HHHHHHHHHHHHHhhcCC
Q 021180 143 LGNIPTIAFCDTDSPMRYVDIGIPANNKGKHS-I--GCLFWLLARMVLQMRGTI 193 (316)
Q Consensus 143 ~lnIPtIAL~DTds~~~~VD~pIP~NndS~~S-I--~Li~~lLaraVl~~rG~i 193 (316)
..+-.++.|.+.+.. ...++.||...+..-+ + -..+++|+..+-..||..
T Consensus 295 ~~g~~vi~i~~~~~~-~~~~~~~p~~~~~~l~pl~~~v~~Qllay~~A~~rG~d 347 (366)
T 3knz_A 295 EWTPSIYRIGPQVEN-NGLNLNFPFVNDEDFAVFEYIIPLQMLCAILPPQKGIN 347 (366)
T ss_dssp HHCSCEEEEESSSCC-SSSSEECCCCCCTTTTHHHHHHHHHHHHHHCC------
T ss_pred HcCCeEEEEecCCCc-cceeEEeCCCCchHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 889999999876542 5678888874333222 2 344677777777777764
No 83
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=42.21 E-value=57 Score=29.48 Aligned_cols=96 Identities=10% Similarity=0.019 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEccCchh-----HHHHHHHHHHcCCceec-----CCccCCccCCcc-cccccCCc
Q 021180 56 GKTWEKLQMAARVIVAIENPGDIIVQSARPYG-----QRAVLKFAKYTHAHAIA-----GRHTPGTFTNQM-QTSFNEPR 124 (316)
Q Consensus 56 ~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~-----q~aV~kfA~~tGa~~I~-----grw~pGtLTN~~-~~~f~eP~ 124 (316)
.|=...|..|+..+..-...-+++++|..+.. ...+++.++..|..--. --+..|.+.+.. ..-++.-|
T Consensus 196 ~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~ad 275 (413)
T 3oy2_A 196 RKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACD 275 (413)
T ss_dssp GGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCS
T ss_pred hcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCC
Confidence 45556666666665543334578888876532 36667777777654200 013355555322 22356667
Q ss_pred eEEEeCCCCC-chhHHHhhhcCCCEEEE
Q 021180 125 LLILTDPRTD-HQPIKEAALGNIPTIAF 151 (316)
Q Consensus 125 llVV~DP~~d-~qaI~EAs~lnIPtIAL 151 (316)
++|+..-.+. ...+.||..+|+|+|+-
T Consensus 276 v~v~pS~~E~~~~~~lEAma~G~PvI~s 303 (413)
T 3oy2_A 276 VIVNCSSGEGFGLCSAEGAVLGKPLIIS 303 (413)
T ss_dssp EEEECCSCCSSCHHHHHHHTTTCCEEEE
T ss_pred EEEeCCCcCCCCcHHHHHHHcCCCEEEc
Confidence 7777543211 45789999999999983
No 84
>4fmw_A RNA (guanine-9-)-methyltransferase domain-contain protein 2; structural genomics, structural genomics consortium, SGC, RN modification; HET: SAH; 2.00A {Homo sapiens}
Probab=42.12 E-value=31 Score=30.30 Aligned_cols=74 Identities=8% Similarity=-0.057 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC
Q 021180 55 LGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD 134 (316)
Q Consensus 55 L~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d 134 (316)
+..+..+|.+.+........+.++.|+|......+... +....+ .+|.+-++|.........++=||.++|..+
T Consensus 38 ~~sl~~Ql~~~y~~nRr~~~p~~l~~t~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~f~~~~iVYLtpDs~ 111 (197)
T 4fmw_A 38 IKKLHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNMD----ENDKGW--VNWKDIHIKPEHYSELIKKEDLIYLTSDSP 111 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCEEEEESCCHHHHHHHH----HHCGGG--GTCSSCEECSSCHHHHSCGGGEEEECTTCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEeCCChHHHHHHH----HhhccC--ccccceeecCccHHHhCCcccEEEECCCch
Confidence 66788888888888888888999999887644433322 221111 245555555543322223334455555444
No 85
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=42.12 E-value=43 Score=28.25 Aligned_cols=44 Identities=16% Similarity=0.097 Sum_probs=29.9
Q ss_pred cCCceEEEeCCC-CCchhHHHhhhcCCCEEEEecCCCCCCcceEEe
Q 021180 121 NEPRLLILTDPR-TDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (316)
Q Consensus 121 ~eP~llVV~DP~-~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (316)
+.+|.||+.... .+...++++...+||+|.+ |++.+...+++..
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~ 101 (272)
T 3o74_A 57 RRCDALFVASCLPPEDDSYRELQDKGLPVIAI-DRRLDPAHFCSVI 101 (272)
T ss_dssp TTCSEEEECCCCCSSCCHHHHHHHTTCCEEEE-SSCCCTTTCEEEE
T ss_pred cCCCEEEEecCccccHHHHHHHHHcCCCEEEE-ccCCCccccCEEE
Confidence 467888887654 3467788899999999865 5554443455543
No 86
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=41.95 E-value=55 Score=27.94 Aligned_cols=57 Identities=12% Similarity=0.035 Sum_probs=36.0
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHH
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lL 182 (316)
+.+|.||+..... ...++++...+||+|.+ |++.+...+++... |......++...|
T Consensus 62 ~~vdgiIi~~~~~-~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~---D~~~~g~~a~~~L 118 (276)
T 3jy6_A 62 RGFDGLILQSFSN-PQTVQEILHQQMPVVSV-DREMDACPWPQVVT---DNFEAAKAATTAF 118 (276)
T ss_dssp TTCSEEEEESSCC-HHHHHHHHTTSSCEEEE-SCCCTTCSSCEEEC---CHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCc-HHHHHHHHHCCCCEEEE-ecccCCCCCCEEEE---ChHHHHHHHHHHH
Confidence 5678898887666 67888888899999976 55444333455433 2344444444333
No 87
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Probab=41.65 E-value=66 Score=29.12 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=33.2
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhcCCCEEEEecCCCCCCcceEEe
Q 021180 121 NEPRLLILTDPRTD----HQPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (316)
Q Consensus 121 ~eP~llVV~DP~~d----~qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (316)
.+-|++|++...-+ ..+++.|+..|+++|+|++.. ++...|+.+
T Consensus 78 ~~~dlvI~iS~SG~T~e~~~a~~~ak~~g~~~iaIT~~~-~La~~~~~l 125 (302)
T 1tzb_A 78 ARDGLLIAVSYSGNTIETLYTVEYAKRRRIPAVAITTGG-RLAQMGVPT 125 (302)
T ss_dssp CSSSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEEESST-TGGGSSSCE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEECCCc-hHHHCCeeE
Confidence 66788888875554 457889999999999999987 554335555
No 88
>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 2.35A {Clostridium novyi}
Probab=41.42 E-value=2.2e+02 Score=26.97 Aligned_cols=119 Identities=13% Similarity=0.022 Sum_probs=71.5
Q ss_pred CCCcEEEEccCch---hHHHHHHHHHHc-CC----ceecCCccCCccCCcccccccCCc-eEEEeCCCC------CchhH
Q 021180 74 NPGDIIVQSARPY---GQRAVLKFAKYT-HA----HAIAGRHTPGTFTNQMQTSFNEPR-LLILTDPRT------DHQPI 138 (316)
Q Consensus 74 n~~~ILfVstr~~---~q~aV~kfA~~t-Ga----~~I~grw~pGtLTN~~~~~f~eP~-llVV~DP~~------d~qaI 138 (316)
+..+++|+|+... ..+.-+|+-+-+ |. ++..+-|..|.+. .-.++ .+|++.+.. ++..+
T Consensus 229 ~~~~~~~lGrG~~~~~A~E~ALKlkE~s~g~i~a~~~~~~e~~HGP~a------lvd~~~pvi~~~~~d~~t~~~~~~~~ 302 (393)
T 3odp_A 229 KFKRTVYLGAANAFGLAKESALKVLELTAGKIATLYDTPLGFRHGPKS------IIDDETLIVIFFSNDTYAREYEYDLL 302 (393)
T ss_dssp CCSEEEEECCTHHHHHHHHHHHHHHHHTTSSSEEEEECHHHHTTTGGG------GCCTTEEEEEECCSSHHHHHHHHHHH
T ss_pred CCCeEEEEeCCcCHHHHHHHHHHHHHHhhccchheeecHhhheecccc------ccCCCceEEEEEcCCchhhHHHHHHH
Confidence 5577899999753 456677777766 22 3344446666543 12222 344444442 34688
Q ss_pred HHhhhcC--CCEEEEecCCC----CCCcceEEec-----CCCCCchhHH--HHHHHHHHHHHHhhcCCCCCCCc
Q 021180 139 KEAALGN--IPTIAFCDTDS----PMRYVDIGIP-----ANNKGKHSIG--CLFWLLARMVLQMRGTIRPGHKW 199 (316)
Q Consensus 139 ~EAs~ln--IPtIAL~DTds----~~~~VD~pIP-----~NndS~~SI~--Li~~lLaraVl~~rG~i~~~~~w 199 (316)
+|....| -.+|+|+|... ......+.|| ..++-...+- +.+++|+..+-..||... ++|.
T Consensus 303 ~ev~arg~~~~vi~i~~~~~~~~~~~~~~~i~~p~~~~~~~~~~l~pi~~~ip~Qllay~~A~~~G~dp-D~Pr 375 (393)
T 3odp_A 303 KEVYSQNGNHKVLAISEYEDKLIEDNSDYFIAINKEEQEYEDDSFLSLDYLLNAQMYAFINSMELGIGP-DNPC 375 (393)
T ss_dssp HHHHHSSSCCEEEEEEEECCHHHHTTCSEEEEEESSCCCCSSGGGGHHHHHHHHHHHHHHHHHHHTCCT-TCSC
T ss_pred HHHHhcCCCceEEEEEcCCcchhccCCcEEEEeCCccccCCChHHhHHHHHHHHHHHHHHHHHHcCCCC-CCCC
Confidence 9999988 89999988642 1223445578 3333333332 337888988888888753 4443
No 89
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=41.09 E-value=52 Score=27.40 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=37.1
Q ss_pred CcEEEEcc---CchhHHHHHHHHHHcCCceecC--------------Cc--cC--CccCCcc-c---ccccCCceEEEeC
Q 021180 76 GDIIVQSA---RPYGQRAVLKFAKYTHAHAIAG--------------RH--TP--GTFTNQM-Q---TSFNEPRLLILTD 130 (316)
Q Consensus 76 ~~ILfVst---r~~~q~aV~kfA~~tGa~~I~g--------------rw--~p--GtLTN~~-~---~~f~eP~llVV~D 130 (316)
.-++++|. +....+.+.+|++++|+..++. .+ ++ |.+.+.. . ..+.+-|+||++.
T Consensus 36 rPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~G~~~~~~~~~~~~~~~~aDlvl~iG 115 (170)
T 3cf4_G 36 RPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKWPGLDGNGNYDMIITIG 115 (170)
T ss_dssp SEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTCCCSSSSCCCSEEEEES
T ss_pred CCEEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeeccccCChhhhhHHHHhhcCCEEEEEC
Confidence 34677776 3456778999999999877654 11 11 1111111 1 3367899999999
Q ss_pred CCC
Q 021180 131 PRT 133 (316)
Q Consensus 131 P~~ 133 (316)
.+-
T Consensus 116 ~~~ 118 (170)
T 3cf4_G 116 FKK 118 (170)
T ss_dssp CCH
T ss_pred Ccc
Confidence 876
No 90
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=40.69 E-value=41 Score=25.21 Aligned_cols=74 Identities=7% Similarity=-0.034 Sum_probs=40.9
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccc----cccCCceEEEeCCCCCchhHHHhhh-c-CCC
Q 021180 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT----SFNEPRLLILTDPRTDHQPIKEAAL-G-NIP 147 (316)
Q Consensus 74 n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~----~f~eP~llVV~DP~~d~qaI~EAs~-l-nIP 147 (316)
+..+||+|...+.....+.+..+..|.... .+++.... .-..||+|| +........+++... . ++|
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~-------~~~~~~~al~~l~~~~~dlvi-~~~~~g~~~~~~l~~~~~~~~ 88 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNVKGFMAD-------VTESLEDGEYLMDIRNYDLVM-VSDKNALSFVSRIKEKHSSIV 88 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHHTTCEEE-------EESCHHHHHHHHHHSCCSEEE-ECSTTHHHHHHHHHHHSTTSE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCcEEE-------EeCCHHHHHHHHHcCCCCEEE-EcCccHHHHHHHHHhcCCCcc
Confidence 445788888877777777666666543221 11221111 124689988 432222334444443 3 889
Q ss_pred EEEEecCC
Q 021180 148 TIAFCDTD 155 (316)
Q Consensus 148 tIAL~DTd 155 (316)
+|.+.+.+
T Consensus 89 ii~ls~~~ 96 (137)
T 2pln_A 89 VLVSSDNP 96 (137)
T ss_dssp EEEEESSC
T ss_pred EEEEeCCC
Confidence 99987654
No 91
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=40.36 E-value=76 Score=28.23 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHhh----------CCCcEEEEcc---CchhHHHHH---HHHHHcCCceecCCccCCccCCccc--
Q 021180 56 GKTWEKLQMAARVIVAIE----------NPGDIIVQSA---RPYGQRAVL---KFAKYTHAHAIAGRHTPGTFTNQMQ-- 117 (316)
Q Consensus 56 ~kT~ekL~~Aa~~I~~I~----------n~~~ILfVst---r~~~q~aV~---kfA~~tGa~~I~grw~pGtLTN~~~-- 117 (316)
..|-++++.+++-+-... +...|-|+-. .++....+. +.++..|...+.. ...+....+..
T Consensus 39 ~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~i 117 (344)
T 3kjx_A 39 DATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVG-VTDYLPEKEEKVL 117 (344)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEE-ECTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEE-eCCCCHHHHHHHH
Confidence 377888888877764321 1234544432 345444443 4444445443221 11111111100
Q ss_pred --ccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCC
Q 021180 118 --TSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSP 157 (316)
Q Consensus 118 --~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~ 157 (316)
..-+..|.||+.....+...+.++...+||+|.+-|....
T Consensus 118 ~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~~ 159 (344)
T 3kjx_A 118 YEMLSWRPSGVIIAGLEHSEAARAMLDAAGIPVVEIMDSDGK 159 (344)
T ss_dssp HHHHTTCCSEEEEECSCCCHHHHHHHHHCSSCEEEEEECSSC
T ss_pred HHHHhCCCCEEEEECCCCCHHHHHHHHhCCCCEEEEeCCCCC
Confidence 0125789999988776777788888999999999765443
No 92
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=40.24 E-value=63 Score=27.58 Aligned_cols=59 Identities=17% Similarity=0.042 Sum_probs=36.6
Q ss_pred cCCceEEEeCCCCCc--hhHHHhhhcCCCEEEEecCCCCC-CcceEEecCCCCCchhHHHHHHHHH
Q 021180 121 NEPRLLILTDPRTDH--QPIKEAALGNIPTIAFCDTDSPM-RYVDIGIPANNKGKHSIGCLFWLLA 183 (316)
Q Consensus 121 ~eP~llVV~DP~~d~--qaI~EAs~lnIPtIAL~DTds~~-~~VD~pIP~NndS~~SI~Li~~lLa 183 (316)
+.+|.||+.....+. ..++++...+||+|.+ |++.+. ..+++.-.- ......++...|.
T Consensus 63 ~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~D---~~~~g~~~~~~l~ 124 (293)
T 3l6u_A 63 LKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAI-DRMIRSDAVVSSITSN---NQMIGEQLASYIK 124 (293)
T ss_dssp TTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEE-SSCCCCTTCSEEEEEC---HHHHHHHHHHHHH
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHcCCCEEEe-cCCCCCCcceeEEecC---HHHHHHHHHHHHH
Confidence 568889888655554 7788999999999887 444433 345555433 3344444444343
No 93
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=39.26 E-value=20 Score=28.98 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHH--HcCCceecCCccCCccCCc-ccccccCCceEEEeCCCC
Q 021180 57 KTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAK--YTHAHAIAGRHTPGTFTNQ-MQTSFNEPRLLILTDPRT 133 (316)
Q Consensus 57 kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~--~tGa~~I~grw~pGtLTN~-~~~~f~eP~llVV~DP~~ 133 (316)
|=+..|..|+..+ ..-+++++|..+...+ ++++++ ..|..- +=+|+ |.+.+. ....++.-|++|+.....
T Consensus 36 Kg~~~li~a~~~l----~~~~l~i~G~~~~~~~-l~~~~~~~~~~l~~-~v~~~-g~~~~~e~~~~~~~adi~v~ps~~e 108 (177)
T 2f9f_A 36 KRIELQLEVFKKL----QDEKLYIVGWFSKGDH-AERYARKIMKIAPD-NVKFL-GSVSEEELIDLYSRCKGLLCTAKDE 108 (177)
T ss_dssp GTHHHHHHHHHHC----TTSCEEEEBCCCTTST-HHHHHHHHHHHSCT-TEEEE-ESCCHHHHHHHHHHCSEEEECCSSC
T ss_pred cCHHHHHHHHHhC----CCcEEEEEecCccHHH-HHHHHHhhhcccCC-cEEEe-CCCCHHHHHHHHHhCCEEEeCCCcC
Confidence 3344444444333 3457888887654432 333444 222110 00122 444432 222356667777643222
Q ss_pred -CchhHHHhhhcCCCEEEE
Q 021180 134 -DHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 134 -d~qaI~EAs~lnIPtIAL 151 (316)
-...+.||..+|+|+|+.
T Consensus 109 ~~~~~~~Eama~G~PvI~~ 127 (177)
T 2f9f_A 109 DFGLTPIEAMASGKPVIAV 127 (177)
T ss_dssp CSCHHHHHHHHTTCCEEEE
T ss_pred CCChHHHHHHHcCCcEEEe
Confidence 245789999999999985
No 94
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=39.08 E-value=43 Score=28.29 Aligned_cols=69 Identities=10% Similarity=0.034 Sum_probs=38.0
Q ss_pred CcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC---------chhHHHhhhcCC
Q 021180 76 GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD---------HQPIKEAALGNI 146 (316)
Q Consensus 76 ~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d---------~qaI~EAs~lnI 146 (316)
++|++|...-..-+.|.+.-++.|+..+-- .|.. .+...|.||+..+..- ...++++...++
T Consensus 3 ~~I~iiD~g~~n~~si~~al~~~G~~~~v~-------~~~~--~l~~~D~lilPG~g~~~~~~~~~~~~~~i~~~~~~~~ 73 (211)
T 4gud_A 3 QNVVIIDTGCANISSVKFAIERLGYAVTIS-------RDPQ--VVLAADKLFLPGVGTASEAMKNLTERDLIELVKRVEK 73 (211)
T ss_dssp CCEEEECCCCTTHHHHHHHHHHTTCCEEEE-------CCHH--HHHHCSEEEECCCSCHHHHHHHHHHTTCHHHHHHCCS
T ss_pred CEEEEEECCCChHHHHHHHHHHCCCEEEEE-------CCHH--HHhCCCEEEECCCCCHHHHHHHHHhcChHHHHHHcCC
Confidence 356666543332344555556667655321 1211 2344577777554321 223566777899
Q ss_pred CEEEEec
Q 021180 147 PTIAFCD 153 (316)
Q Consensus 147 PtIAL~D 153 (316)
|+.++|-
T Consensus 74 PvlGICl 80 (211)
T 4gud_A 74 PLLGICL 80 (211)
T ss_dssp CEEEETH
T ss_pred CEEEEch
Confidence 9999984
No 95
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=38.85 E-value=31 Score=32.48 Aligned_cols=32 Identities=6% Similarity=-0.054 Sum_probs=23.8
Q ss_pred cCCceEEEeCCCCCch-hHHHhhhcCCCEEEEe
Q 021180 121 NEPRLLILTDPRTDHQ-PIKEAALGNIPTIAFC 152 (316)
Q Consensus 121 ~eP~llVV~DP~~d~q-aI~EAs~lnIPtIAL~ 152 (316)
..||+|++.+...... +..-|.+.|||++-+.
T Consensus 113 ~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~ 145 (403)
T 3ot5_A 113 ENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVE 145 (403)
T ss_dssp HCCSEEEEETTCHHHHHHHHHHHHTTCEEEEES
T ss_pred cCCCEEEEECCchhHHHHHHHHHHhCCCEEEEE
Confidence 5899999997654433 3578899999986443
No 96
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=38.15 E-value=62 Score=28.42 Aligned_cols=86 Identities=8% Similarity=0.035 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcc-cccccCCceEEEeCC---
Q 021180 56 GKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM-QTSFNEPRLLILTDP--- 131 (316)
Q Consensus 56 ~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~-~~~f~eP~llVV~DP--- 131 (316)
.|=...|..|+..+ .-+++++|..+.. ..++++++..|... +| -|.+.+.. ..-++.-|++|+...
T Consensus 174 ~Kg~~~li~a~~~~-----~~~l~i~G~g~~~-~~l~~~~~~~~~~v---~~-~g~~~~~~l~~~~~~adv~v~ps~~~~ 243 (342)
T 2iuy_A 174 HKGALEAAAFAHAC-----GRRLVLAGPAWEP-EYFDEITRRYGSTV---EP-IGEVGGERRLDLLASAHAVLAMSQAVT 243 (342)
T ss_dssp GGTHHHHHHHHHHH-----TCCEEEESCCCCH-HHHHHHHHHHTTTE---EE-CCCCCHHHHHHHHHHCSEEEECCCCCC
T ss_pred ccCHHHHHHHHHhc-----CcEEEEEeCcccH-HHHHHHHHHhCCCE---EE-eccCCHHHHHHHHHhCCEEEECCcccc
Confidence 34444555555443 4578888886533 34455666665211 23 35555532 223566687777654
Q ss_pred ------CCC--chhHHHhhhcCCCEEEE
Q 021180 132 ------RTD--HQPIKEAALGNIPTIAF 151 (316)
Q Consensus 132 ------~~d--~qaI~EAs~lnIPtIAL 151 (316)
..+ ...+.||..+|+|+|+-
T Consensus 244 ~~~~~~~~E~~~~~~~EAma~G~PvI~s 271 (342)
T 2iuy_A 244 GPWGGIWCEPGATVVSEAAVSGTPVVGT 271 (342)
T ss_dssp CTTCSCCCCCCCHHHHHHHHTTCCEEEC
T ss_pred cccccccccCccHHHHHHHhcCCCEEEc
Confidence 022 46789999999999984
No 97
>3i0z_A Putative tagatose-6-phosphate ketose/aldose isome; NP_344614.1, putative putative tagatose-6-phosphate ketose/A isomerase; HET: MSE; 1.70A {Streptococcus pneumoniae TIGR4}
Probab=36.99 E-value=2.8e+02 Score=26.27 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=69.2
Q ss_pred CCCcEEEEccCch---hHHHHHHHHHHcC-C----ceecCCccCCccCCcccccccCCce-EEEeCCCC------CchhH
Q 021180 74 NPGDIIVQSARPY---GQRAVLKFAKYTH-A----HAIAGRHTPGTFTNQMQTSFNEPRL-LILTDPRT------DHQPI 138 (316)
Q Consensus 74 n~~~ILfVstr~~---~q~aV~kfA~~tG-a----~~I~grw~pGtLTN~~~~~f~eP~l-lVV~DP~~------d~qaI 138 (316)
+..+++|+|+... ..+.-+|+-+-+. . .+..+-|..|.+. +-.++. +|++.+.. +...+
T Consensus 229 ~~~~~~~lGrG~~y~~A~EgALKlkE~s~Gei~a~~~~~~e~kHGP~a------lid~~~pVi~~~~~d~~~~~~~~~~~ 302 (389)
T 3i0z_A 229 DFNRVIYLGAGPFFGLAHEAQLKILELTAGQVATMYESPVGFRHGPKS------LINDNTVVLVFGTTTDYTRKYDLDLV 302 (389)
T ss_dssp CCSEEEEEESTHHHHHHHHHHHHHHHHHTTSSEEEEECHHHHTTTGGG------GCCTTEEEEEECCCSHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHHccCcccceeecHhhccccchh------hcCCCceEEEEEcCCchhhHHHHHHH
Confidence 5567899999753 4566667777663 1 2233335566432 222333 44445443 24578
Q ss_pred HHhhhc--CCCEEEEecCCCCCCc-ceEEec---CCCCCchhHH--HHHHHHHHHHHHhhcCCCCCCC
Q 021180 139 KEAALG--NIPTIAFCDTDSPMRY-VDIGIP---ANNKGKHSIG--CLFWLLARMVLQMRGTIRPGHK 198 (316)
Q Consensus 139 ~EAs~l--nIPtIAL~DTds~~~~-VD~pIP---~NndS~~SI~--Li~~lLaraVl~~rG~i~~~~~ 198 (316)
+|.... +-.+|+|++.+..... .++.|| .-++-...+- +.+++|+-.+-..||... ++|
T Consensus 303 ~ev~arg~g~~vi~i~~~~~~~~~~~~~~i~~~~~~~~~l~pl~~~vp~QllAy~~A~~rG~dp-D~P 369 (389)
T 3i0z_A 303 REVAGDQIARRVVLLSDQAFGLENVKEVALGCGGVLNDIYRVFPYIVYAQLFALLTSLKVENKP-DTP 369 (389)
T ss_dssp HHHHHHTCSSEEEEEESSCCCCTTCEEEECCCSSCSCGGGGHHHHHHHHHHHHHHHHHHTTCCT-TSC
T ss_pred HHHHhccCCCeEEEEECCCcccccCceEEecCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCC-CCC
Confidence 898886 5799999986644332 456665 2333333332 337889988888888753 444
No 98
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=36.57 E-value=56 Score=33.62 Aligned_cols=104 Identities=12% Similarity=0.175 Sum_probs=66.0
Q ss_pred ccceeeecCCccccCHHH--HHHHHHHHHHHHHHhhCCCcEE-EEccCchhHHHHHHHHHHcCCceecCCccCCccCCcc
Q 021180 40 RYVFKRRNDGIYIINLGK--TWEKLQMAARVIVAIENPGDII-VQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM 116 (316)
Q Consensus 40 ~YIyg~R~dGi~IINL~k--T~ekL~~Aa~~I~~I~n~~~IL-fVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~ 116 (316)
.++|+.=| ..+-||..- +|-+ ++.++ |+.+| +.......+..++++++..|...--=.|.+.+-....
T Consensus 523 ~v~f~~fN-~~~Ki~p~~~~~W~~------IL~~v--P~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~ 593 (723)
T 4gyw_A 523 AIVYCNFN-QLYKIDPSTLQMWAN------ILKRV--PNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEH 593 (723)
T ss_dssp SEEEECCS-CGGGCCHHHHHHHHH------HHHHC--SSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEECCCHHHH
T ss_pred CEEEEeCC-ccccCCHHHHHHHHH------HHHhC--CCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECCCCCHHHH
Confidence 37888874 788887643 3333 33444 44555 5666667788888999888865311113332211111
Q ss_pred cccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEe
Q 021180 117 QTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFC 152 (316)
Q Consensus 117 ~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~ 152 (316)
-..++.-|+.+=+=|-.-+.---||..+|+|||.+.
T Consensus 594 l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~ 629 (723)
T 4gyw_A 594 VRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMP 629 (723)
T ss_dssp HHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCC
T ss_pred HHHhCCCeEEeCCCCcCCHHHHHHHHHcCCCEEEcc
Confidence 123567787655557788999999999999999885
No 99
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=36.37 E-value=83 Score=28.18 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=29.0
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (316)
+..|-||++....+...+.++...+||+|.+-+...
T Consensus 125 ~~vdGiI~~~~~~~~~~~~~l~~~~iPvV~i~~~~~ 160 (355)
T 3e3m_A 125 RRPEAMVLSYDGHTEQTIRLLQRASIPIVEIWEKPA 160 (355)
T ss_dssp TCCSEEEEECSCCCHHHHHHHHHCCSCEEEESSCCS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhCCCCEEEECCccC
Confidence 678999998877777778888899999999855433
No 100
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=36.37 E-value=29 Score=29.95 Aligned_cols=32 Identities=9% Similarity=0.245 Sum_probs=24.6
Q ss_pred ccCCceEEEeCCCCCchhHHHhhhcCCCEEEE
Q 021180 120 FNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 120 f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL 151 (316)
--.|||||..+-......+..-+..||||+.+
T Consensus 57 ~l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~ 88 (255)
T 3md9_A 57 AMKPTMLLVSELAQPSLVLTQIASSGVNVVTV 88 (255)
T ss_dssp TTCCSEEEEETTCSCHHHHHHHHHTTCEEEEE
T ss_pred ccCCCEEEEcCCcCchhHHHHHHHcCCcEEEe
Confidence 46999999887544345667777889999987
No 101
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=36.14 E-value=66 Score=27.98 Aligned_cols=56 Identities=13% Similarity=0.085 Sum_probs=35.7
Q ss_pred cCCceEEEeCCCCCch-hHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHH
Q 021180 121 NEPRLLILTDPRTDHQ-PIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182 (316)
Q Consensus 121 ~eP~llVV~DP~~d~q-aI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lL 182 (316)
+..|-||+.....+.. .+.++.. +||+|.+ |++.+. .+++...- ...+..+....|
T Consensus 70 ~~vdgiI~~~~~~~~~~~~~~l~~-~iPvV~i-~~~~~~-~~~~V~~D---~~~~g~~a~~~L 126 (303)
T 3kke_A 70 GRVDGVLLQRREDFDDDMLAAVLE-GVPAVTI-NSRVPG-RVGSVILD---DQKGGGIATEHL 126 (303)
T ss_dssp CSSSEEEECCCTTCCHHHHHHHHT-TSCEEEE-SCCCTT-CCCEEEEC---HHHHHHHHHHHH
T ss_pred CCCcEEEEecCCCCcHHHHHHHhC-CCCEEEE-CCcCCC-CCCEEEEC---cHHHHHHHHHHH
Confidence 5789999987766666 7888888 9999866 555443 45554332 334444444333
No 102
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=36.09 E-value=43 Score=29.87 Aligned_cols=89 Identities=13% Similarity=0.059 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcc-cccccCCceEEEeCCCCC-
Q 021180 57 KTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQM-QTSFNEPRLLILTDPRTD- 134 (316)
Q Consensus 57 kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~-~~~f~eP~llVV~DP~~d- 134 (316)
|=...|..|+..+..-...-+++++|..+. ..+++.++... ..| +| -|.+.+.. ..-++.-|++|+..-..+
T Consensus 222 Kg~~~li~a~~~l~~~~~~~~l~i~G~~~~--~~l~~~~~~~~-~~v--~~-~g~~~~~~~~~~~~~adv~v~ps~~~e~ 295 (406)
T 2gek_A 222 KGMAVLLAALPKLVARFPDVEILIVGRGDE--DELREQAGDLA-GHL--RF-LGQVDDATKASAMRSADVYCAPHLGGES 295 (406)
T ss_dssp GCHHHHHHHHHHHHTTSTTCEEEEESCSCH--HHHHHHTGGGG-GGE--EE-CCSCCHHHHHHHHHHSSEEEECCCSCCS
T ss_pred cCHHHHHHHHHHHHHHCCCeEEEEEcCCcH--HHHHHHHHhcc-CcE--EE-EecCCHHHHHHHHHHCCEEEecCCCCCC
Confidence 334445555544433223457788888776 44455444331 111 13 34444432 233566788877642222
Q ss_pred -chhHHHhhhcCCCEEEE
Q 021180 135 -HQPIKEAALGNIPTIAF 151 (316)
Q Consensus 135 -~qaI~EAs~lnIPtIAL 151 (316)
...+.||..+|+|+|+-
T Consensus 296 ~~~~~~Ea~a~G~PvI~~ 313 (406)
T 2gek_A 296 FGIVLVEAMAAGTAVVAS 313 (406)
T ss_dssp SCHHHHHHHHHTCEEEEC
T ss_pred CchHHHHHHHcCCCEEEe
Confidence 45789999999999984
No 103
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=35.88 E-value=91 Score=28.18 Aligned_cols=90 Identities=9% Similarity=0.007 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEccCch----hHHHHHHHHHHcCCc-eecCCccCCccCCc----ccccccCCceEEEe
Q 021180 59 WEKLQMAARVIVAIENPGDIIVQSARPY----GQRAVLKFAKYTHAH-AIAGRHTPGTFTNQ----MQTSFNEPRLLILT 129 (316)
Q Consensus 59 ~ekL~~Aa~~I~~I~n~~~ILfVstr~~----~q~aV~kfA~~tGa~-~I~grw~pGtLTN~----~~~~f~eP~llVV~ 129 (316)
...|..|+..+..-...-+++++|..+. ....++++++..|.. .| +|+ |.+.+. ...-+..-|++|+.
T Consensus 246 ~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V--~~~-G~~~~~~~~~~~~~~~~ad~~v~p 322 (416)
T 2x6q_A 246 IFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDV--KVL-TNLIGVHAREVNAFQRASDVILQM 322 (416)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTE--EEE-EGGGTCCHHHHHHHHHHCSEEEEC
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcE--EEe-cccCCCCHHHHHHHHHhCCEEEEC
Confidence 3444455444433222456777777642 234455566655531 11 122 222221 11224556777665
Q ss_pred CCCCC-chhHHHhhhcCCCEEEE
Q 021180 130 DPRTD-HQPIKEAALGNIPTIAF 151 (316)
Q Consensus 130 DP~~d-~qaI~EAs~lnIPtIAL 151 (316)
.-.+. ...+.||..+|+|+|+-
T Consensus 323 s~~E~~~~~~lEAma~G~PvI~~ 345 (416)
T 2x6q_A 323 SIREGFGLTVTEAMWKGKPVIGR 345 (416)
T ss_dssp CSSCSSCHHHHHHHHTTCCEEEE
T ss_pred CCcCCCccHHHHHHHcCCCEEEc
Confidence 43222 45789999999999984
No 104
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=35.02 E-value=52 Score=28.34 Aligned_cols=36 Identities=6% Similarity=0.013 Sum_probs=21.5
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSP 157 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~ 157 (316)
+..|.||+.....+...++++...+||+|.+ |++.+
T Consensus 64 ~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~ 99 (290)
T 3clk_A 64 RPVMGILLLSIALTDDNLQLLQSSDVPYCFL-SMGFD 99 (290)
T ss_dssp SCCSEEEEESCC----CHHHHHCC--CEEEE-SCC--
T ss_pred cCCCEEEEecccCCHHHHHHHHhCCCCEEEE-cCCCC
Confidence 5688888887655556678888889999876 55433
No 105
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=34.71 E-value=60 Score=27.88 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=26.9
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEE
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (316)
+.+|.||+.....+...+.++. .+||+|.+ |++.+-..+++.
T Consensus 63 ~~vdgiI~~~~~~~~~~~~~l~-~~iPvV~~-~~~~~~~~~~~V 104 (285)
T 3c3k_A 63 KMVDGVITMDALSELPELQNII-GAFPWVQC-AEYDPLSTVSSV 104 (285)
T ss_dssp TCCSEEEECCCGGGHHHHHHHH-TTSSEEEE-SSCCTTSSSCEE
T ss_pred CCCCEEEEeCCCCChHHHHHHh-cCCCEEEE-ccccCCCCCCEE
Confidence 5678888876544445677777 89999987 544332234443
No 106
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=34.69 E-value=90 Score=27.16 Aligned_cols=44 Identities=23% Similarity=0.164 Sum_probs=27.6
Q ss_pred cCCceEEEeCCCCCc--hhHHHhhhcCCCEEEEecCCCCC-CcceEEe
Q 021180 121 NEPRLLILTDPRTDH--QPIKEAALGNIPTIAFCDTDSPM-RYVDIGI 165 (316)
Q Consensus 121 ~eP~llVV~DP~~d~--qaI~EAs~lnIPtIAL~DTds~~-~~VD~pI 165 (316)
+.+|.||+.....+. ..++++...+||+|.+ |++.+. ..+++..
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~ 102 (313)
T 2h3h_A 56 EGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTL-DTDSPDSGRYVYIG 102 (313)
T ss_dssp TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCTTSCCSCEEE
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEe-CCCCCCcceeEEEC
Confidence 457888876543332 5688888899999976 544332 2344443
No 107
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=34.57 E-value=88 Score=23.58 Aligned_cols=80 Identities=10% Similarity=0.056 Sum_probs=42.9
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCc-cCCcccccc-cCCceEEEeCCCCCc---hhHHHhh--hcCC
Q 021180 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGT-FTNQMQTSF-NEPRLLILTDPRTDH---QPIKEAA--LGNI 146 (316)
Q Consensus 74 n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGt-LTN~~~~~f-~eP~llVV~DP~~d~---qaI~EAs--~lnI 146 (316)
++.+||+|...+.....+.++.+..|.+-+.. ...+. .-... ..- ..||+||+---..+. ..+++.. .-++
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~-~~~~~~~~~~~-~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 96 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTR-TVGRAAQIVQR-TDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGL 96 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEE-ECCCHHHHTTC-HHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEE-eCCHHHHHHHH-HhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCC
Confidence 45679999998888888887777777333332 11111 10000 011 468876653322332 2233322 2478
Q ss_pred CEEEEecCC
Q 021180 147 PTIAFCDTD 155 (316)
Q Consensus 147 PtIAL~DTd 155 (316)
|+|.+.+.+
T Consensus 97 ~ii~lt~~~ 105 (146)
T 4dad_A 97 TCLLVTTDA 105 (146)
T ss_dssp EEEEEESCC
T ss_pred cEEEEeCCC
Confidence 998887654
No 108
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=34.37 E-value=67 Score=27.43 Aligned_cols=44 Identities=11% Similarity=0.014 Sum_probs=29.8
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCCCC-cceEEe
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPMR-YVDIGI 165 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~~~-~VD~pI 165 (316)
+.+|.||+.....+ ...++++...+||+|.+ |++.+-. .+++.-
T Consensus 68 ~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~ 114 (304)
T 3gbv_A 68 EQPDGVMFAPTVPQYTKGFTDALNELGIPYIYI-DSQIKDAPPLAFFG 114 (304)
T ss_dssp TCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEE-SSCCTTSCCSEEEE
T ss_pred cCCCEEEECCCChHHHHHHHHHHHHCCCeEEEE-eCCCCCCCceEEEe
Confidence 57899988876543 45688898999999876 4544332 355544
No 109
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=33.75 E-value=48 Score=30.89 Aligned_cols=89 Identities=9% Similarity=-0.018 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEccCch-hHHHHHHHHHHcCCceecCCccCCccCCcc-cccccCCceEEEeCCCCC
Q 021180 57 KTWEKLQMAARVIVAIENPGDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQM-QTSFNEPRLLILTDPRTD 134 (316)
Q Consensus 57 kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~-~q~aV~kfA~~tGa~~I~grw~pGtLTN~~-~~~f~eP~llVV~DP~~d 134 (316)
|=...|..|+..+.. ..-+++++|..+. ....++++++..+... .+..|. .+.. ..-+..-|++|+..-.+.
T Consensus 305 Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v---~~~~g~-~~~~~~~~~~~adv~v~pS~~E~ 378 (485)
T 2qzs_A 305 KGLDLVLEALPGLLE--QGGQLALLGAGDPVLQEGFLAAAAEYPGQV---GVQIGY-HEAFSHRIMGGADVILVPSRFEP 378 (485)
T ss_dssp GCHHHHHHHHHHHHH--TTCEEEEEEEECHHHHHHHHHHHHHSTTTE---EEEESC-CHHHHHHHHHHCSEEEECCSCCS
T ss_pred cCHHHHHHHHHHHhh--CCcEEEEEeCCchHHHHHHHHHHHhCCCcE---EEeCCC-CHHHHHHHHHhCCEEEECCccCC
Confidence 334445555554433 3567788887652 4556667777665221 123444 3322 233566677776653222
Q ss_pred -chhHHHhhhcCCCEEEE
Q 021180 135 -HQPIKEAALGNIPTIAF 151 (316)
Q Consensus 135 -~qaI~EAs~lnIPtIAL 151 (316)
...+.||..+|+|+|+-
T Consensus 379 ~g~~~lEAma~G~PvI~s 396 (485)
T 2qzs_A 379 CGLTQLYGLKYGTLPLVR 396 (485)
T ss_dssp SCSHHHHHHHHTCEEEEE
T ss_pred CcHHHHHHHHCCCCEEEC
Confidence 45789999999999986
No 110
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=33.45 E-value=34 Score=29.48 Aligned_cols=34 Identities=6% Similarity=0.033 Sum_probs=24.6
Q ss_pred ccccCCceEEEeCCCCCchhHHHhhhcCCCEEEE
Q 021180 118 TSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 118 ~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL 151 (316)
..--.|||||..+...+...+..-++++|||+.+
T Consensus 55 i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~ 88 (256)
T 2r7a_A 55 ILSLRPDSVITWQDAGPQIVLDQLRAQKVNVVTL 88 (256)
T ss_dssp HHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEE
T ss_pred HHccCCCEEEEcCCCCCHHHHHHHHHcCCcEEEe
Confidence 3346899999876533445666677899999876
No 111
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=33.44 E-value=98 Score=25.94 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=25.6
Q ss_pred CceEEEeCC--CCCchhHHHhhhcCCCEEEEecCCCC
Q 021180 123 PRLLILTDP--RTDHQPIKEAALGNIPTIAFCDTDSP 157 (316)
Q Consensus 123 P~llVV~DP--~~d~qaI~EAs~lnIPtIAL~DTds~ 157 (316)
+|.||+... ......++++...+||+|.+ |++.+
T Consensus 60 vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~ 95 (276)
T 3ksm_A 60 PDALILAPNSAEDLTPSVAQYRARNIPVLVV-DSDLA 95 (276)
T ss_dssp CSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCcEEEE-ecCCC
Confidence 888888763 34567889999999999977 44443
No 112
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=32.64 E-value=78 Score=26.90 Aligned_cols=43 Identities=9% Similarity=-0.045 Sum_probs=28.4
Q ss_pred cCCceEEEeCCC-----CCchhHHHhhhcCCCEEEEecCCCCCCcceEE
Q 021180 121 NEPRLLILTDPR-----TDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (316)
Q Consensus 121 ~eP~llVV~DP~-----~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (316)
+..|.||+.... .+...++++...+||+|.+ |++.+...+++.
T Consensus 70 ~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V 117 (298)
T 3tb6_A 70 QHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMI-NASYAELAAPSF 117 (298)
T ss_dssp TCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEE-SSCCTTCSSCEE
T ss_pred CCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEE-ecCcCCCCCCEE
Confidence 567888887543 3446788899999999976 444433334443
No 113
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp}
Probab=32.31 E-value=3.1e+02 Score=25.53 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=71.4
Q ss_pred hCCCcEEEEccCch---hHHHHHHHHHHcCC---ceecCCccCCccCCcccccccCCceEEEeCCCCCc-----hhHHHh
Q 021180 73 ENPGDIIVQSARPY---GQRAVLKFAKYTHA---HAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDH-----QPIKEA 141 (316)
Q Consensus 73 ~n~~~ILfVstr~~---~q~aV~kfA~~tGa---~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d~-----qaI~EA 141 (316)
.+..+++|+|+... ..+.-+|+-+-+.. .|-.+-|..|.+.=-. . .. .||++.+.... ..++|.
T Consensus 225 ~~~~~~~~lGrG~~~~~A~E~ALKlkE~s~i~ae~~~a~E~~HGP~alid-~--~~--pvi~~~~~d~~~~k~~~~~~e~ 299 (372)
T 3tbf_A 225 SDKEHTIFLGRGLYYPIAIEGALKLKEISYIHAEAYPSGELKHGPLALVD-K--NM--PIVAVVPNDELLDKTLSNLQEV 299 (372)
T ss_dssp TTCCEEEEEECTTHHHHHHHHHHHHHHHHCCEEEEEEGGGTTTTTTTTCC-T--TC--EEEEEECSSTTHHHHHHHHHHH
T ss_pred hccCCEEEEecCcCHHHHHHHHHHHHHHhCcCcceeeHHHhcCccHhhcC-C--CC--eEEEEecCCchHHHHHHHHHHH
Confidence 45678999999764 34555677776654 3556778888653211 1 11 23444333221 357888
Q ss_pred hhcCCCEEEEecCCC-CC----CcceEEecCCCCCchhHH--HHHHHHHHHHHHhhcCC
Q 021180 142 ALGNIPTIAFCDTDS-PM----RYVDIGIPANNKGKHSIG--CLFWLLARMVLQMRGTI 193 (316)
Q Consensus 142 s~lnIPtIAL~DTds-~~----~~VD~pIP~NndS~~SI~--Li~~lLaraVl~~rG~i 193 (316)
...|-.+|+|+|.+. .. ....+.||..++-...+- +.+++|+-.+-..||..
T Consensus 300 ~~rg~~vi~i~~~~~~~~~~~~~~~~i~~p~~~~~l~pl~~~i~~Qlla~~~A~~rG~d 358 (372)
T 3tbf_A 300 HARGGKLILFVDKAVKERVNFDNSIVLELDAGHDFSAPVVFTIPLQLLSYHVAIIKGTD 358 (372)
T ss_dssp HHTTCEEEEEEEGGGGGGCCCTTCEEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHcCCeEEEEECCCcccccccccceEEECCCCchhHhHHHHHHHHHHHHHHHHHHcCcC
Confidence 888999999998654 22 223466786554444433 34788998888888875
No 114
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=32.22 E-value=44 Score=31.10 Aligned_cols=89 Identities=16% Similarity=0.045 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEccCch-hHHHHHHHHHHcCCceecCCccCCccCCcc-cccccCCceEEEeCCCCC
Q 021180 57 KTWEKLQMAARVIVAIENPGDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQM-QTSFNEPRLLILTDPRTD 134 (316)
Q Consensus 57 kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~-~q~aV~kfA~~tGa~~I~grw~pGtLTN~~-~~~f~eP~llVV~DP~~d 134 (316)
|=...|..|+..+.. ..-+++++|..+. ....+++.++..+... .+..|. .+.. ..-++.-|++|+..-.+.
T Consensus 304 Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v---~~~~g~-~~~~~~~~~~~adv~v~pS~~E~ 377 (485)
T 1rzu_A 304 KGIDLMAEAVDEIVS--LGGRLVVLGAGDVALEGALLAAASRHHGRV---GVAIGY-NEPLSHLMQAGCDAIIIPSRFEP 377 (485)
T ss_dssp TTHHHHHTTHHHHHH--TTCEEEEEECBCHHHHHHHHHHHHHTTTTE---EEEESC-CHHHHHHHHHHCSEEEECCSCCS
T ss_pred cCHHHHHHHHHHHHh--cCceEEEEeCCchHHHHHHHHHHHhCCCcE---EEecCC-CHHHHHHHHhcCCEEEECcccCC
Confidence 434455555554433 3567888888653 3556667777665221 123444 3322 233566687776653222
Q ss_pred -chhHHHhhhcCCCEEEE
Q 021180 135 -HQPIKEAALGNIPTIAF 151 (316)
Q Consensus 135 -~qaI~EAs~lnIPtIAL 151 (316)
...+.||..+|+|+|+-
T Consensus 378 ~~~~~lEAma~G~PvI~s 395 (485)
T 1rzu_A 378 CGLTQLYALRYGCIPVVA 395 (485)
T ss_dssp SCSHHHHHHHHTCEEEEE
T ss_pred CCHHHHHHHHCCCCEEEe
Confidence 45789999999999994
No 115
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=31.92 E-value=70 Score=27.41 Aligned_cols=92 Identities=10% Similarity=0.050 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhCCCcEEEEccCchh------HHHHHHHHHHcCCceecCCccCCccCCccc--------ccccCCceEEE
Q 021180 63 QMAARVIVAIENPGDIIVQSARPYG------QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ--------TSFNEPRLLIL 128 (316)
Q Consensus 63 ~~Aa~~I~~I~n~~~ILfVstr~~~------q~aV~kfA~~tGa~~I~grw~pGtLTN~~~--------~~f~eP~llVV 128 (316)
+.|++.+... ..++|.|++..... .+..++..+..|..+.......|.++.... .....|+.||+
T Consensus 114 ~~a~~~L~~~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 192 (291)
T 3egc_A 114 RTAVEYLIAR-GHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLT 192 (291)
T ss_dssp HHHHHHHHHT-TCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEE
T ss_pred HHHHHHHHHc-CCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEE
Confidence 3444444432 44679888775421 233344455555543221122233332211 12357899988
Q ss_pred eCCCCCchhHHHhhhcC------CCEEEEecCC
Q 021180 129 TDPRTDHQPIKEAALGN------IPTIAFCDTD 155 (316)
Q Consensus 129 ~DP~~d~qaI~EAs~ln------IPtIAL~DTd 155 (316)
.+-..-.-+++.+...| |-+|++-|+.
T Consensus 193 ~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 225 (291)
T 3egc_A 193 SSHRITEGAMQALNVLGLRYGPDVEIVSFDNLP 225 (291)
T ss_dssp SSHHHHHHHHHHHHHHTCCBTTTBEEEEESCCG
T ss_pred CCcHHHHHHHHHHHHcCCCCCCceEEEEecCch
Confidence 76332222333333333 3388886664
No 116
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=31.83 E-value=89 Score=27.60 Aligned_cols=43 Identities=7% Similarity=-0.003 Sum_probs=29.1
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEE
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~p 164 (316)
+..|.||+.....+...+.++...+||+|.+ |+..+-..+++.
T Consensus 118 ~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V 160 (332)
T 2o20_A 118 KQVDGIVYMGSSLDEKIRTSLKNSRTPVVLV-GTIDGDKEIPSV 160 (332)
T ss_dssp TTCSEEEECSSCCCHHHHHHHHHHCCCEEEE-SCCCTTSCSCEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE-ccccCCCCCCEE
Confidence 5789998887655556788887889999876 554332234443
No 117
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=31.67 E-value=3.1e+02 Score=25.29 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=70.9
Q ss_pred hCCCcEEEEccCch---hHHHHHHHHHHcCCc---eecCCccCCccCCcccccccCCc-eEEEeCCCCC---chhHHHhh
Q 021180 73 ENPGDIIVQSARPY---GQRAVLKFAKYTHAH---AIAGRHTPGTFTNQMQTSFNEPR-LLILTDPRTD---HQPIKEAA 142 (316)
Q Consensus 73 ~n~~~ILfVstr~~---~q~aV~kfA~~tGa~---~I~grw~pGtLTN~~~~~f~eP~-llVV~DP~~d---~qaI~EAs 142 (316)
.+..+++|+|+... ..+.-+|+-+-+..+ |-.+-|..|.+- .-.++ .||++.+..+ ...+.|..
T Consensus 206 ~~~~~~~~lGrG~~~~~A~E~ALKlkE~s~i~ae~~~a~E~~HGP~a------lid~~~pvi~~~~~~~~~~~~~~~~~~ 279 (352)
T 3g68_A 206 VNSKEIRIIGHSDIYGDTLEAALKLLETMRIPVTGYEFEEFIHGIYN------AINSDSTIFILDTGKEPRVTKMIDVLS 279 (352)
T ss_dssp HTCCEEEEEECGGGHHHHHHHHHHHHHHHCSCEEEEEHHHHHTTGGG------GCCTTEEEEEEECSCCTTHHHHHHHHH
T ss_pred hCCCcEEEEeCCCCHHHHHHHHHHHHHHhcccccccchhhccccchh------eeCCCceEEEEECCchHHHHHHHHHHH
Confidence 46678999999754 456666776665443 344556666542 12222 2444444322 34677888
Q ss_pred hcCCCEEEEecCCCCCCcceEEecCCCCC-chhH--HHHHHHHHHHHHHhhcCC
Q 021180 143 LGNIPTIAFCDTDSPMRYVDIGIPANNKG-KHSI--GCLFWLLARMVLQMRGTI 193 (316)
Q Consensus 143 ~lnIPtIAL~DTds~~~~VD~pIP~NndS-~~SI--~Li~~lLaraVl~~rG~i 193 (316)
..+-.++.|.+.+.. ...++.||.-.+. ...+ -..+++|+..+-..||..
T Consensus 280 ~~g~~v~~i~~~~~~-~~~~~~~p~~~~~~~~pl~~~v~~Qlla~~~A~~~G~d 332 (352)
T 3g68_A 280 GWTENVFAIGRDVTE-NDKNLKIDITDNPYYQTFNFIVPIQLICGEIPTLRGVD 332 (352)
T ss_dssp TTCSCEEEEESSCCC-STTCEECCCCSCTTGGGGTTTHHHHHHHHHSGGGGTCC
T ss_pred HcCCeEEEEecCCCC-CceeEEeCCCCchhHhHHHHHHHHHHHHHHHHHHhCcC
Confidence 889999999876542 4567888864332 2222 345788998888888875
No 118
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=31.37 E-value=93 Score=26.76 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=29.5
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCCCCC-cceEEe
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDSPMR-YVDIGI 165 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTds~~~-~VD~pI 165 (316)
+.+|.||+.....+ ...++++...+||+|.+ |++.+.. .+++.-
T Consensus 60 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~ 106 (305)
T 3g1w_A 60 KNPAGIAISAIDPVELTDTINKAVDAGIPIVLF-DSGAPDSHAHSFLG 106 (305)
T ss_dssp HCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCTTSCCSCEEE
T ss_pred hCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEE-CCCCCCCceeEEEC
Confidence 56898888754333 56889999999999876 5544432 355543
No 119
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=31.10 E-value=81 Score=26.83 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=24.9
Q ss_pred cCCceEEEeCCCCCc--hhHHHhhhcCCCEEEEecCCC
Q 021180 121 NEPRLLILTDPRTDH--QPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 121 ~eP~llVV~DP~~d~--qaI~EAs~lnIPtIAL~DTds 156 (316)
+.+|.||+.....+. ..++++...+||+|.+ |+..
T Consensus 64 ~~vdgii~~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~ 100 (289)
T 3brs_A 64 RKPDVILLAAADYEKTYDAAKEIKDAGIKLIVI-DSGM 100 (289)
T ss_dssp TCCSEEEECCSCTTTTHHHHTTTGGGTCEEEEE-SSCC
T ss_pred hCCCEEEEeCCChHHhHHHHHHHHHCCCcEEEE-CCCC
Confidence 467888887655443 5677888889999876 5443
No 120
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=30.76 E-value=61 Score=28.05 Aligned_cols=59 Identities=12% Similarity=0.047 Sum_probs=33.1
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCC--C----EEEEecCC----CCCCcceEEecC-CCCCchhHHHHH
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNI--P----TIAFCDTD----SPMRYVDIGIPA-NNKGKHSIGCLF 179 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnI--P----tIAL~DTd----s~~~~VD~pIP~-NndS~~SI~Li~ 179 (316)
..|+.||+.+-..-.-+++.+...|+ | +|++-|+. ..+.+.++-.|. -.-+..++.+++
T Consensus 186 ~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~~~~~~~p~lttv~~~~~~~~g~~av~~L~ 255 (294)
T 3qk7_A 186 VPPTAIITDCNMLGDGVASALDKAGLLGGEGISLIAYDGLPDDSLLDIAVTPIVQNTRTSVGKQIASMIC 255 (294)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCSSTTSCEEEEETCSCTTCSCCSCCEEEECCCHHHHHHHHHHHHH
T ss_pred CCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEeecCccHHhhcCCCceeEecCcHHHHHHHHHHHHH
Confidence 57899998763322334444444443 3 88887775 334455666555 344555555444
No 121
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=30.67 E-value=63 Score=31.10 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=41.3
Q ss_pred cEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEe----CCCCC---chhHHHhhhcCCCEE
Q 021180 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT----DPRTD---HQPIKEAALGNIPTI 149 (316)
Q Consensus 77 ~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~----DP~~d---~qaI~EAs~lnIPtI 149 (316)
+|+++...-. .-+.+.....|+..+.-++. ++.....-..||.||+. ||..+ ...|+++...++|+.
T Consensus 192 ~V~viD~G~k--~ni~r~L~~~G~~v~vvp~~----~~~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~~~~~~~PIL 265 (379)
T 1a9x_B 192 HVVAYDFGAK--RNILRMLVDRGCRLTIVPAQ----TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVF 265 (379)
T ss_dssp EEEEEESSCC--HHHHHHHHHTTEEEEEEETT----CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEE
T ss_pred EEEEEECCCh--HHHHHHHHHCCCEEEEEecc----CCHHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCCEE
Confidence 5777776322 33555555667655433332 11111112368999995 45443 456788887899999
Q ss_pred EEe
Q 021180 150 AFC 152 (316)
Q Consensus 150 AL~ 152 (316)
+||
T Consensus 266 GIC 268 (379)
T 1a9x_B 266 GIC 268 (379)
T ss_dssp EET
T ss_pred EEC
Confidence 997
No 122
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=30.63 E-value=1e+02 Score=26.27 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=23.8
Q ss_pred cCCceEEEeCCCCCc--hhHHHhhhcCCCEEEEecCC
Q 021180 121 NEPRLLILTDPRTDH--QPIKEAALGNIPTIAFCDTD 155 (316)
Q Consensus 121 ~eP~llVV~DP~~d~--qaI~EAs~lnIPtIAL~DTd 155 (316)
+.+|.||+.....+. ..++++...+||+|.+ |+.
T Consensus 57 ~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~-~~~ 92 (290)
T 2fn9_A 57 AGYDAIIFNPTDADGSIANVKRAKEAGIPVFCV-DRG 92 (290)
T ss_dssp TTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEE-SSC
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHCCCeEEEE-ecC
Confidence 457888877544332 5678888889999976 443
No 123
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=30.14 E-value=98 Score=26.86 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=42.0
Q ss_pred EEEEcc-CchhHHHHHHHHHHcCCceecCC-ccCCccCCcccccccCCceEEEeC-CCC---------------CchhHH
Q 021180 78 IIVQSA-RPYGQRAVLKFAKYTHAHAIAGR-HTPGTFTNQMQTSFNEPRLLILTD-PRT---------------DHQPIK 139 (316)
Q Consensus 78 ILfVst-r~~~q~aV~kfA~~tGa~~I~gr-w~pGtLTN~~~~~f~eP~llVV~D-P~~---------------d~qaI~ 139 (316)
|++|-. ....-..+..+++..|.....-+ +.+..+.. ....+|.|||+. |.. ....|+
T Consensus 3 i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~----~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~ 78 (236)
T 3l7n_A 3 IHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPK----DIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQ 78 (236)
T ss_dssp EEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCS----CGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHH
T ss_pred EEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCC----CccccCEEEECCCCCCcccccccCcccchHHHHHHHH
Confidence 444333 33445566777777776542222 22322221 245689999986 221 135677
Q ss_pred HhhhcCCCEEEEe
Q 021180 140 EAALGNIPTIAFC 152 (316)
Q Consensus 140 EAs~lnIPtIAL~ 152 (316)
++...++|++|||
T Consensus 79 ~~~~~~~PvLGIC 91 (236)
T 3l7n_A 79 KAAKSEKIIVGVC 91 (236)
T ss_dssp HHHHTTCEEEEET
T ss_pred HHHHcCCCEEEEc
Confidence 8888899999997
No 124
>3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase, 2-(N-morphol ethanesulfonic acid (MES), IDP01892; HET: MES; 1.95A {Bacillus anthracis str} PDB: 3h83_A* 3kb8_A*
Probab=29.97 E-value=1.9e+02 Score=25.17 Aligned_cols=76 Identities=17% Similarity=0.088 Sum_probs=37.0
Q ss_pred HcCceeccccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCc
Q 021180 24 AAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAH 101 (316)
Q Consensus 24 aAgvHlG~~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~ 101 (316)
.+|+.||+.|.+|.-..-+ ...- .-.+++-......+.+.++.|..--.....++|+--..+-.....+|...|..
T Consensus 8 ~~~~~~~~~~~~f~~~~~~-~~di-~~~l~s~~~i~~~i~~LA~~I~~~~~~~~~vVVgi~~GG~~~a~~La~~L~~p 83 (204)
T 3hvu_A 8 SSGVDLGTENLYFQSNAMM-NQDI-EKVLISEEQIQEKVLELGAIIAEDYKNTVPLAIGVLKGAMPFMADLLKRTDTY 83 (204)
T ss_dssp -----------CCCCCCCG-GGGE-EEEEECHHHHHHHHHHHHHHHHHHTSSSCCEEEEETTTTHHHHHHHHHTCCSC
T ss_pred ccccccCCCCCCCCCchhh-hhcC-CcEeCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCcchHHHHHHHHHHhCCC
Confidence 4688899998877655432 1111 12356766666666655555543212234566776666666677889988864
No 125
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=29.89 E-value=39 Score=29.82 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=23.6
Q ss_pred ccCCceEEEeCCCCCchhHHHhhhcCCCEEEE
Q 021180 120 FNEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 120 f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL 151 (316)
--.|||||..+.......+...++++|||+.+
T Consensus 57 ~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~ 88 (283)
T 2r79_A 57 ALRPDILIGTEEMGPPPVLKQLEGAGVRVETL 88 (283)
T ss_dssp TTCCSEEEECTTCCCHHHHHHHHHTTCCEEEC
T ss_pred hcCCCEEEEeCccCcHHHHHHHHHcCCcEEEe
Confidence 36899999876433445667778899999876
No 126
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=29.49 E-value=36 Score=29.20 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=22.6
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEE
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL 151 (316)
-.|||||..+...+...+..-++++|||+.+
T Consensus 56 l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~ 86 (245)
T 1n2z_A 56 LKPDLVIAWRGGNAERQVDQLASLGIKVMWV 86 (245)
T ss_dssp TCCSEEEECTTTSCHHHHHHHHHHTCCEEEC
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHCCCcEEEe
Confidence 6899999864333445666777899999865
No 127
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=29.48 E-value=94 Score=30.25 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=36.3
Q ss_pred ccCCceEEEeC-CCCCchhHHHhhhcCCCEEEEecCCCCC--CcceEEecCCCCCchhHHHH
Q 021180 120 FNEPRLLILTD-PRTDHQPIKEAALGNIPTIAFCDTDSPM--RYVDIGIPANNKGKHSIGCL 178 (316)
Q Consensus 120 f~eP~llVV~D-P~~d~qaI~EAs~lnIPtIAL~DTds~~--~~VD~pIP~NndS~~SI~Li 178 (316)
+...|+||+.. -..++-.+.+|...|||+++=.+--..+ ..--+.|=+- +++.+..-|
T Consensus 79 ~~~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGT-nGKTTTt~m 139 (494)
T 4hv4_A 79 VLDASVVVVSTAISADNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGT-HGKTTTTAM 139 (494)
T ss_dssp GTTCSEEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECS-SSHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecC-CChHHHHHH
Confidence 45678888764 3456778899999999999754421100 1124777775 456555443
No 128
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=29.47 E-value=1.1e+02 Score=26.92 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=25.9
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEEecCCC
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL~DTds 156 (316)
+.+|.||+. ...+ ...++++...+||+|.++|...
T Consensus 103 ~~vdgiIi~-~~~~~~~~~~~~~~~~~ip~V~~~~~~~ 139 (342)
T 1jx6_A 103 SKSDYLIFT-LDTTRHRKFVEHVLDSTNTKLILQNITT 139 (342)
T ss_dssp TTCSEEEEC-CSSSTTHHHHHHHHHHCSCEEEEETCCS
T ss_pred cCCCEEEEe-CChHhHHHHHHHHHHcCCCEEEEecCCC
Confidence 568888883 2222 4678888888999999988754
No 129
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=29.41 E-value=53 Score=28.19 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=24.6
Q ss_pred cCCceEEEeCCCCC--chhHHHhhhcCCCEEEE
Q 021180 121 NEPRLLILTDPRTD--HQPIKEAALGNIPTIAF 151 (316)
Q Consensus 121 ~eP~llVV~DP~~d--~qaI~EAs~lnIPtIAL 151 (316)
+.+|.||+.....+ ...++++. .+||+|.+
T Consensus 62 ~~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~ 93 (304)
T 3o1i_D 62 WGANAIILGTVDPHAYEHNLKSWV-GNTPVFAT 93 (304)
T ss_dssp HTCSEEEECCSSTTSSTTTHHHHT-TTSCEEEC
T ss_pred cCCCEEEEeCCChhHHHHHHHHHc-CCCCEEEe
Confidence 56888988876666 67799999 99999987
No 130
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=28.32 E-value=1.4e+02 Score=26.29 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=27.2
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEec
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCD 153 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~D 153 (316)
+..|-||+.....+...+.++...+||+|.+-+
T Consensus 117 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~~~ 149 (339)
T 3h5o_A 117 HRPDGVLITGLSHAEPFERILSQHALPVVYMMD 149 (339)
T ss_dssp TCCSEEEEECSCCCTTHHHHHHHTTCCEEEEES
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcCCCCEEEEee
Confidence 678999998876666778888889999998844
No 131
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=27.65 E-value=1.5e+02 Score=25.02 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCcEEEEccC------chhHHHHHHHHHHcCCceecCCccCCccCCcccccc--------cCCceEEE
Q 021180 63 QMAARVIVAIENPGDIIVQSAR------PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSF--------NEPRLLIL 128 (316)
Q Consensus 63 ~~Aa~~I~~I~n~~~ILfVstr------~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f--------~eP~llVV 128 (316)
+.+++.+... ..++|.|++.. ....+..++..+..|..........|.++....... ..|+.||+
T Consensus 115 ~~~~~~L~~~-G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 193 (289)
T 1dbq_A 115 YMAGRYLIER-GHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC 193 (289)
T ss_dssp HHHHHHHHHT-TCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE
T ss_pred HHHHHHHHHC-CCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEE
Q ss_pred eCCCCCchhHHHhhhcCCC------EEEEecCC----CCCCcceEEecCCCCCchhHHHHHHHH
Q 021180 129 TDPRTDHQPIKEAALGNIP------TIAFCDTD----SPMRYVDIGIPANNKGKHSIGCLFWLL 182 (316)
Q Consensus 129 ~DP~~d~qaI~EAs~lnIP------tIAL~DTd----s~~~~VD~pIP~NndS~~SI~Li~~lL 182 (316)
.+-..-..+++.+...|+. +|++-|+. ..+.+.++-.|.-.-+..++.+++.+|
T Consensus 194 ~~d~~a~g~~~al~~~G~~vP~di~vvg~d~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~~~i 257 (289)
T 1dbq_A 194 GGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRI 257 (289)
T ss_dssp SCHHHHHHHHHHHHHTTCCTTTTCEEEEEECCTTGGGSSSCCEEEECCSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCCCCceEEEeeCCchHhccCCCccccccCCHHHHHHHHHHHHHHHH
No 132
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=27.19 E-value=41 Score=31.69 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=26.1
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDT 154 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DT 154 (316)
..||+|++.+....--+..-|.+.|||++ .+..
T Consensus 93 ~kPD~Vlv~gd~~~~~aalaA~~~~IPv~-h~ea 125 (385)
T 4hwg_A 93 EKPDAVLFYGDTNSCLSAIAAKRRKIPIF-HMEA 125 (385)
T ss_dssp HCCSEEEEESCSGGGGGHHHHHHTTCCEE-EESC
T ss_pred cCCcEEEEECCchHHHHHHHHHHhCCCEE-EEeC
Confidence 58999999987666666889999999964 5544
No 133
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=27.05 E-value=1.7e+02 Score=21.32 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=41.5
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCccc----ccccCCceEEEeC--CCCC-chhHHHhhh--c
Q 021180 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ----TSFNEPRLLILTD--PRTD-HQPIKEAAL--G 144 (316)
Q Consensus 74 n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~----~~f~eP~llVV~D--P~~d-~qaI~EAs~--l 144 (316)
.+.+||+|...+.....+.++.+..|...+. .+|... ..-..||+||+-- |..+ ...+++.+. -
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~-------~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~ 78 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVL-------AADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGD 78 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEE-------ESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEE-------eCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCC
Confidence 3467999999888888888777776643221 122221 1124688765532 2222 233443333 3
Q ss_pred CCCEEEEecCC
Q 021180 145 NIPTIAFCDTD 155 (316)
Q Consensus 145 nIPtIAL~DTd 155 (316)
++|+|.+.+.+
T Consensus 79 ~~~ii~~t~~~ 89 (130)
T 3eod_A 79 QTPVLVISATE 89 (130)
T ss_dssp CCCEEEEECCC
T ss_pred CCCEEEEEcCC
Confidence 68998887654
No 134
>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 2.35A {Clostridium novyi}
Probab=27.04 E-value=2.4e+02 Score=26.76 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=27.5
Q ss_pred cCCceEEEeCCCCC----chhHHHhhhc--CCCEEEEecC-CCCC
Q 021180 121 NEPRLLILTDPRTD----HQPIKEAALG--NIPTIAFCDT-DSPM 158 (316)
Q Consensus 121 ~eP~llVV~DP~~d----~qaI~EAs~l--nIPtIAL~DT-ds~~ 158 (316)
.+.+++|++...-+ ..+++.|+.. |+++|+|++. +|++
T Consensus 107 ~~~dlvI~iS~SGeT~e~l~al~~ak~~~~Ga~~iaIT~~~~S~L 151 (393)
T 3odp_A 107 DEPTLLISCARSGNSPESTAAVTLAEKIVDDISHLIITCNSEGKL 151 (393)
T ss_dssp TSCEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTTSHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhhcCCCcEEEEECCCCCHH
Confidence 46678777764443 4467889988 9999999975 5544
No 135
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=26.66 E-value=1e+02 Score=22.97 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=39.3
Q ss_pred CcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccc----c--ccCCceEEEeC--CCCC-chhHHHhhh--c
Q 021180 76 GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT----S--FNEPRLLILTD--PRTD-HQPIKEAAL--G 144 (316)
Q Consensus 76 ~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~----~--f~eP~llVV~D--P~~d-~qaI~EAs~--l 144 (316)
.+||+|...+.....+.++.+..|...+ ..+|.... . -..||+||+-- +..+ ...+++.+. -
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~-------~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~ 76 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVL-------TASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITP 76 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEE-------EESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEE-------EeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCC
Confidence 4688888888777777777766653211 11222111 1 24688766542 2222 233333332 3
Q ss_pred CCCEEEEecCC
Q 021180 145 NIPTIAFCDTD 155 (316)
Q Consensus 145 nIPtIAL~DTd 155 (316)
++|+|.+.+..
T Consensus 77 ~~~ii~ls~~~ 87 (143)
T 3jte_A 77 HMAVIILTGHG 87 (143)
T ss_dssp TCEEEEEECTT
T ss_pred CCeEEEEECCC
Confidence 68888886543
No 136
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=26.12 E-value=58 Score=29.20 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=24.9
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDT 154 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DT 154 (316)
-.|||||..+- .+...+..-+++||||+.+-..
T Consensus 83 l~PDlIi~~~~-~~~~~~~~L~~~Gipvv~~~~~ 115 (326)
T 3psh_A 83 LKPDVVFVTNY-APSEMIKQISDVNIPVVAISLR 115 (326)
T ss_dssp TCCSEEEEETT-CCHHHHHHHHTTTCCEEEECSC
T ss_pred cCCCEEEEeCC-CChHHHHHHHHcCCCEEEEecc
Confidence 68999998764 3445677778899999988443
No 137
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=26.02 E-value=47 Score=32.94 Aligned_cols=103 Identities=13% Similarity=0.091 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhCCCcEEEEccC--chhHHHHHHHHHHcCCceecCCcc-CCcc---------------CCcccccccCC
Q 021180 62 LQMAARVIVAIENPGDIIVQSAR--PYGQRAVLKFAKYTHAHAIAGRHT-PGTF---------------TNQMQTSFNEP 123 (316)
Q Consensus 62 L~~Aa~~I~~I~n~~~ILfVstr--~~~q~aV~kfA~~tGa~~I~grw~-pGtL---------------TN~~~~~f~eP 123 (316)
+.+++..|.. +.-++++|.. ....+.+.+||+++|...++.-+. .|.+ ++.....+.++
T Consensus 214 i~~~~~~L~~---~rPvIl~G~g~~~~~~~~l~~lae~~~~PV~~t~~~~~~~~~~~hp~~~g~~~~~~~~~~~~~~~~a 290 (578)
T 3lq1_A 214 IQKMVTECTG---KKGVFVVGPIDKKELEQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTP 290 (578)
T ss_dssp HHHHHHHTTT---SCEEEEECSCCCTTCHHHHHHHHHHHTCCEEECGGGSTTSBSSCCSSEECCHHHHTTSHHHHHHTCC
T ss_pred HHHHHHHhcc---CCeEEEECCCCChHHHHHHHHHHHhcCcEEEEecCCCCCCCCCCCccccccHHHHhcCccccccCCC
Confidence 4555554443 3345666653 234678899999999987763221 1222 11111124689
Q ss_pred ceEEEeCCCCCchhHHHhhh--cCCCEEEEecCCCC----CCcceEEecCC
Q 021180 124 RLLILTDPRTDHQPIKEAAL--GNIPTIAFCDTDSP----MRYVDIGIPAN 168 (316)
Q Consensus 124 ~llVV~DP~~d~qaI~EAs~--lnIPtIAL~DTds~----~~~VD~pIP~N 168 (316)
|+||.+..+.....+..-.. -+..+| .+|.|.. ...++++|-++
T Consensus 291 Dlvl~~G~~~~~~~~~~~~~~~~~~~~i-~id~d~~~~~~~~~~~~~i~~d 340 (578)
T 3lq1_A 291 EVVIRFGSMPVSKPLKNWLEQLSDIRFY-VVDPGAAWKDPIKAVTDMIHCD 340 (578)
T ss_dssp SEEEEESSCCSCHHHHHHHHHCCSSEEE-EECTTCCCCCTTCCCSEEECSC
T ss_pred CEEEEeCCcccchhHHHHHhcCCCCEEE-EECCCCCcCCCCcCceEEEEeC
Confidence 99999997643323322111 233333 4455532 12366677663
No 138
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=25.60 E-value=85 Score=26.92 Aligned_cols=70 Identities=11% Similarity=0.063 Sum_probs=39.0
Q ss_pred cEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCC-CC---C----chhHHHhhhcCCCE
Q 021180 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDP-RT---D----HQPIKEAALGNIPT 148 (316)
Q Consensus 77 ~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP-~~---d----~qaI~EAs~lnIPt 148 (316)
+|+++.........+.+..++.|..++.-++.. . ...+..+|.||++.- .. + ....+++...++|+
T Consensus 15 ~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~----~--~~~l~~~DglIl~GG~p~~~~~~~~~~~l~~~~~~~~~Pi 88 (212)
T 2a9v_A 15 KIYVVDNGGQWTHREWRVLRELGVDTKIVPNDI----D--SSELDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPI 88 (212)
T ss_dssp BEEEEEESCCTTCHHHHHHHHTTCBCCEEETTS----C--GGGGTTCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCE
T ss_pred eEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCC----C--HHHHhCCCEEEECCCCCCCCcccccchhHHHHHHhCCCCE
Confidence 577776654444455556666676543322210 1 112334788888854 11 1 12345666778999
Q ss_pred EEEe
Q 021180 149 IAFC 152 (316)
Q Consensus 149 IAL~ 152 (316)
.|||
T Consensus 89 LGIC 92 (212)
T 2a9v_A 89 LGIC 92 (212)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9997
No 139
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=25.54 E-value=67 Score=27.94 Aligned_cols=110 Identities=10% Similarity=0.008 Sum_probs=56.1
Q ss_pred HHHHHHHHHh-hCCCcEEEEccCch--h---HHHHHHHHHHcCCceecCCccCCccCCccc---ccccCCceEEEeCCCC
Q 021180 63 QMAARVIVAI-ENPGDIIVQSARPY--G---QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ---TSFNEPRLLILTDPRT 133 (316)
Q Consensus 63 ~~Aa~~I~~I-~n~~~ILfVstr~~--~---q~aV~kfA~~tGa~~I~grw~pGtLTN~~~---~~f~eP~llVV~DP~~ 133 (316)
.++.+++..+ ...++|.|++.... . .+..++.++..|..+.. .+... .....+ .-...|+.|++.+
T Consensus 120 ~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~-~~~~~-~~~~~~~~~~l~~~~dai~~~~--- 194 (295)
T 3lft_A 120 QQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVET-FAVPS-TNEIASTVTVMTSKVDAIWVPI--- 194 (295)
T ss_dssp HHHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEE-EEESS-GGGHHHHHHHHTTTCSEEEECS---
T ss_pred HHHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEE-EecCC-HHHHHHHHHHHHhcCCEEEECC---
Confidence 3455555554 23468888865432 1 23445566666765433 22211 111111 1125789998864
Q ss_pred Cchh------HHH-hhhcCCCEEEEecCC-CCCCcceEEecCCCCCchhHHH
Q 021180 134 DHQP------IKE-AALGNIPTIAFCDTD-SPMRYVDIGIPANNKGKHSIGC 177 (316)
Q Consensus 134 d~qa------I~E-As~lnIPtIAL~DTd-s~~~~VD~pIP~NndS~~SI~L 177 (316)
|..+ +++ +...+||+|++-|.. ..+.+.++..|.-.-+..+..+
T Consensus 195 D~~a~g~~~~l~~~~~~~~i~vig~d~~~~~~~~Lttv~~~~~~~G~~Aa~~ 246 (295)
T 3lft_A 195 DNTIASGFPTVVSSNQSSKKPIYPSATAMVEVGGLASVVIDQHDLGVATGKM 246 (295)
T ss_dssp CHHHHHTHHHHHHHTTTTCCCEEESSHHHHTTTCCEEEECCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHcCCCEEeCCHHHHhcCcEEEEecCHHHHHHHHHHH
Confidence 4333 333 334689999997654 2344566665543333333333
No 140
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=25.33 E-value=1.6e+02 Score=21.87 Aligned_cols=75 Identities=9% Similarity=-0.003 Sum_probs=41.3
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCccc----ccccCCceEEEeCCCCCch---hHHHhh--hc
Q 021180 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ----TSFNEPRLLILTDPRTDHQ---PIKEAA--LG 144 (316)
Q Consensus 74 n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~----~~f~eP~llVV~DP~~d~q---aI~EAs--~l 144 (316)
+..+||+|...+.....+.+..+..|...+ ..+|... ..-..||+||+-- ..+.. .+++.. .-
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~-------~~~~~~~a~~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~ 74 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVI-------WAKNEQEAFTFLRREKIDLVFVDV-FEGEESLNLIRRIREEFP 74 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEE-------EESSHHHHHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEE-------EECCHHHHHHHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCC
Confidence 456788998888777777766665554321 1122211 1124688776544 33322 233322 23
Q ss_pred CCCEEEEecCCC
Q 021180 145 NIPTIAFCDTDS 156 (316)
Q Consensus 145 nIPtIAL~DTds 156 (316)
++|+|.+.+.+.
T Consensus 75 ~~pii~ls~~~~ 86 (142)
T 2qxy_A 75 DTKVAVLSAYVD 86 (142)
T ss_dssp TCEEEEEESCCC
T ss_pred CCCEEEEECCCC
Confidence 789998876543
No 141
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=25.06 E-value=1.8e+02 Score=20.26 Aligned_cols=74 Identities=11% Similarity=0.163 Sum_probs=40.3
Q ss_pred CcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCccc----ccccCCceEEEeC--CCCC-chhHHHhhh----c
Q 021180 76 GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ----TSFNEPRLLILTD--PRTD-HQPIKEAAL----G 144 (316)
Q Consensus 76 ~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~----~~f~eP~llVV~D--P~~d-~qaI~EAs~----l 144 (316)
.+|++|...+.....+.+..+..|..... .+|... ..-..|+++|+-- +..+ ...++.... .
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~-------~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~ 74 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIW-------LVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADP 74 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEE-------ESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCS
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEE-------ecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccC
Confidence 46888888887777777766665543211 112111 1124688776542 2222 222333322 5
Q ss_pred CCCEEEEecCCC
Q 021180 145 NIPTIAFCDTDS 156 (316)
Q Consensus 145 nIPtIAL~DTds 156 (316)
++|+|.+.+...
T Consensus 75 ~~~ii~~~~~~~ 86 (119)
T 2j48_A 75 HPPLVLFLGEPP 86 (119)
T ss_dssp SCCCEEEESSCC
T ss_pred CCCEEEEeCCCC
Confidence 789999877543
No 142
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=24.69 E-value=1.4e+02 Score=26.05 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=42.8
Q ss_pred CcEEEEccCch-hHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeC--CCC--C---------chhHHHh
Q 021180 76 GDIIVQSARPY-GQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTD--PRT--D---------HQPIKEA 141 (316)
Q Consensus 76 ~~ILfVstr~~-~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~D--P~~--d---------~qaI~EA 141 (316)
-+|+++-..+. ....+.++.+..|...+.-+...+ ......+..+|.||++. +.. + ...|+++
T Consensus 13 ~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~---~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~ 89 (239)
T 1o1y_A 13 VRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKG---EKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEI 89 (239)
T ss_dssp CEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGT---CCCSSCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCc---cccccchhcCCEEEECCCCccccCCccChhHHHHHHHHHHH
Confidence 45666655443 234556666777765542222111 11112345679999986 221 1 3467888
Q ss_pred hhcCCCEEEEe
Q 021180 142 ALGNIPTIAFC 152 (316)
Q Consensus 142 s~lnIPtIAL~ 152 (316)
...++|+.|||
T Consensus 90 ~~~~~PiLGIC 100 (239)
T 1o1y_A 90 LKKEIPFLGIC 100 (239)
T ss_dssp HHHTCCEEEET
T ss_pred HHCCCCEEEEc
Confidence 78899999997
No 143
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=24.58 E-value=83 Score=24.11 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=37.7
Q ss_pred CCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEE
Q 021180 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIA 150 (316)
Q Consensus 75 ~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIA 150 (316)
+..|+|.|+-...+.-+.+..+..|..+ ++.... .-++||+-+... .=++.|..+|||+|.
T Consensus 10 G~~~v~TG~l~~~R~e~~~~i~~~Gg~v----------~~sVsk---kt~~LV~g~~~g--sK~~kA~~lgI~Ii~ 70 (92)
T 1l7b_A 10 GLTFVITGELSRPREEVKALLRRLGAKV----------TDSVSR---KTSYLVVGENPG--SKLEKARALGVPTLT 70 (92)
T ss_dssp TCEEECSTTTTSCHHHHHHHHHHTTCEE----------ESCCSS---SCCCBEECSSSS--TTHHHHHCSSSCCEE
T ss_pred CcEEEEecCCCCCHHHHHHHHHHcCCEE----------eCcccC---CeeEEEeCCCCC--hHHHHHHHcCCcEEe
Confidence 4556777775445666667777766653 222222 235666665332 457889999999975
No 144
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=24.48 E-value=2.8e+02 Score=25.13 Aligned_cols=57 Identities=9% Similarity=0.138 Sum_probs=35.1
Q ss_pred CCceEEEeC-CCCCchhHHHhhhcCCCEEEEecCC---CCCCcceEEecCCCCCchhHHHHH
Q 021180 122 EPRLLILTD-PRTDHQPIKEAALGNIPTIAFCDTD---SPMRYVDIGIPANNKGKHSIGCLF 179 (316)
Q Consensus 122 eP~llVV~D-P~~d~qaI~EAs~lnIPtIAL~DTd---s~~~~VD~pIP~NndS~~SI~Li~ 179 (316)
.+|+||+.- -..++-.+.+|...|||+++=.+-= ..-..--+.|=+- +++.+..-|+
T Consensus 66 ~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGT-nGKTTTt~ll 126 (326)
T 3eag_A 66 KADVYVIGNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGT-HGKTTTASML 126 (326)
T ss_dssp CCSEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESS-SCHHHHHHHH
T ss_pred CCCEEEECCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECC-CCHHHHHHHH
Confidence 578887764 3456778899999999999733210 0001234777775 4666655443
No 145
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=24.47 E-value=76 Score=27.88 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=41.4
Q ss_pred CCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCC-CchhHHHhhhcCCCEEEE
Q 021180 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT-DHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 75 ~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~-d~qaI~EAs~lnIPtIAL 151 (316)
.-+++++|..+ .+.++++++..|..- +=+|+| . ......-++.-|++|+..-.+ -...+.||..+|+|+|+-
T Consensus 228 ~~~l~i~G~g~--~~~~~~~~~~~~~~~-~v~~~g-~-~~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~ 300 (374)
T 2iw1_A 228 NTLLFVVGQDK--PRKFEALAEKLGVRS-NVHFFS-G-RNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTT 300 (374)
T ss_dssp TEEEEEESSSC--CHHHHHHHHHHTCGG-GEEEES-C-CSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEE
T ss_pred ceEEEEEcCCC--HHHHHHHHHHcCCCC-cEEECC-C-cccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEEe
Confidence 34677788754 245566666665321 012343 1 222233355667776654221 256789999999999995
No 146
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=24.41 E-value=91 Score=23.76 Aligned_cols=26 Identities=12% Similarity=-0.011 Sum_probs=18.9
Q ss_pred CCcEEEEccCchhHHHHHHHHHHcCC
Q 021180 75 PGDIIVQSARPYGQRAVLKFAKYTHA 100 (316)
Q Consensus 75 ~~~ILfVstr~~~q~aV~kfA~~tGa 100 (316)
+-+||+|...+.....+.+..+..|.
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~ 29 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGV 29 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCC
Confidence 35688888888777777777777665
No 147
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=24.31 E-value=97 Score=23.58 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=42.7
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccc----cccCCceEEEeC--CCCC-chhHHHhhh--c
Q 021180 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT----SFNEPRLLILTD--PRTD-HQPIKEAAL--G 144 (316)
Q Consensus 74 n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~----~f~eP~llVV~D--P~~d-~qaI~EAs~--l 144 (316)
++.+||+|...+.....+.++.+..|...+.. ..+|.... .-..||+||+-- +..+ ...+++.+. -
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~-----~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~ 88 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVG-----EADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYEL 88 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEE-----EESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTC
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEE-----EeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 45678888888877777777777766443321 11222111 124688766542 2222 233444332 4
Q ss_pred CCCEEEEecCCC
Q 021180 145 NIPTIAFCDTDS 156 (316)
Q Consensus 145 nIPtIAL~DTds 156 (316)
++|+|.+.+.+.
T Consensus 89 ~~~ii~~s~~~~ 100 (152)
T 3eul_A 89 PTRVLLISAHDE 100 (152)
T ss_dssp SCEEEEEESCCC
T ss_pred CCeEEEEEccCC
Confidence 678888876543
No 148
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=24.17 E-value=1.7e+02 Score=21.67 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=42.0
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccc----c------ccCCceEEEeC--CCCC-chhHHH
Q 021180 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT----S------FNEPRLLILTD--PRTD-HQPIKE 140 (316)
Q Consensus 74 n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~----~------f~eP~llVV~D--P~~d-~qaI~E 140 (316)
++.+||+|...+.....+.+..+..|..+... .++|.... . -..||+||+-- |..+ ...+++
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~-----~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~ 80 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIE-----IAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKE 80 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEE-----EESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEE-----EECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHH
Confidence 45678888888887777777777665421111 11221111 0 13588766542 2222 233444
Q ss_pred hhh----cCCCEEEEecCCC
Q 021180 141 AAL----GNIPTIAFCDTDS 156 (316)
Q Consensus 141 As~----lnIPtIAL~DTds 156 (316)
.+. .++|+|.+.+...
T Consensus 81 l~~~~~~~~~~ii~ls~~~~ 100 (143)
T 2qvg_A 81 LRDDSSFTDIEVFVLTAAYT 100 (143)
T ss_dssp HTTSGGGTTCEEEEEESCCC
T ss_pred HHcCccccCCcEEEEeCCCC
Confidence 433 4789998876543
No 149
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=24.13 E-value=1.2e+02 Score=25.33 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=12.3
Q ss_pred hhHHHhhhcCCCEEEEe
Q 021180 136 QPIKEAALGNIPTIAFC 152 (316)
Q Consensus 136 qaI~EAs~lnIPtIAL~ 152 (316)
..|+++ ..++|+.|+|
T Consensus 69 ~~i~~~-~~~~PvLGIC 84 (195)
T 1qdl_B 69 DVIKYL-GKRTPILGVC 84 (195)
T ss_dssp HHHHHH-TTTSCEEEET
T ss_pred HHHHHh-cCCCcEEEEe
Confidence 456664 6799999998
No 150
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=24.05 E-value=1.7e+02 Score=22.16 Aligned_cols=75 Identities=11% Similarity=0.109 Sum_probs=41.4
Q ss_pred CCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCccc----ccccCCceEEEeC--CCCC-chhHHHhh--hcC
Q 021180 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ----TSFNEPRLLILTD--PRTD-HQPIKEAA--LGN 145 (316)
Q Consensus 75 ~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~----~~f~eP~llVV~D--P~~d-~qaI~EAs--~ln 145 (316)
+.+||+|...+.....+.+.....|.... ..+|... ..-..||+||+-- +..+ ...+++.. .-+
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~-------~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~ 75 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVS-------SFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPD 75 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEE-------EESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEE-------EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCC
Confidence 46789999988877777777766654321 1122111 1124588766542 2222 22333332 347
Q ss_pred CCEEEEecCCC
Q 021180 146 IPTIAFCDTDS 156 (316)
Q Consensus 146 IPtIAL~DTds 156 (316)
+|+|.+.+.+.
T Consensus 76 ~pii~ls~~~~ 86 (155)
T 1qkk_A 76 LPMILVTGHGD 86 (155)
T ss_dssp SCEEEEECGGG
T ss_pred CCEEEEECCCC
Confidence 99999986544
No 151
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=23.93 E-value=86 Score=27.64 Aligned_cols=99 Identities=9% Similarity=0.080 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHH--------Hhh--CCCcEEEEc---cCchhH---HHHHHHHHHcCCceecCCccCCccCCcc---
Q 021180 56 GKTWEKLQMAARVIV--------AIE--NPGDIIVQS---ARPYGQ---RAVLKFAKYTHAHAIAGRHTPGTFTNQM--- 116 (316)
Q Consensus 56 ~kT~ekL~~Aa~~I~--------~I~--n~~~ILfVs---tr~~~q---~aV~kfA~~tGa~~I~grw~pGtLTN~~--- 116 (316)
.+|.++.+.|++-+- .+. +...|-|+- +.++.. +.+.+.++..|...+.. ...+....+.
T Consensus 31 ~~tr~rV~~aa~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~~ 109 (332)
T 2hsg_A 31 PSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILS-NSDQNQDKELHLL 109 (332)
T ss_dssp HHHHHHHHHHHHHHTCCSCHHHHHHTTC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEE-ECCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHHHhCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE-eCCCChHHHHHHH
Confidence 467788877776552 232 224454443 244444 34455666667544321 1111111010
Q ss_pred -cccccCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCC
Q 021180 117 -QTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 117 -~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (316)
...-+..|.||+.....+...++++...+||+|.+ |++.
T Consensus 110 ~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~ 149 (332)
T 2hsg_A 110 NNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLA-ASIE 149 (332)
T ss_dssp HHTSCCSSCCEEECCSSCCHHHHHHHTTSSSCEEEE-SCCC
T ss_pred HHHHhCCCcEEEEecCCCCHHHHHHHHhCCCCEEEE-cccc
Confidence 01125789999887665557788888889999876 5543
No 152
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=23.83 E-value=79 Score=28.40 Aligned_cols=104 Identities=13% Similarity=0.218 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccc----cc--cCCceEEEeCCCC
Q 021180 60 EKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT----SF--NEPRLLILTDPRT 133 (316)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~----~f--~eP~llVV~DP~~ 133 (316)
.++.....++.....+.-|+|++++.....+...+.+. |... ..+.|.++..... .| .+.++||.||...
T Consensus 252 ~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-~~~~---~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 327 (412)
T 3fht_A 252 EKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE-GHQV---ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 327 (412)
T ss_dssp HHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT-TCCC---EEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGT
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC-CCeE---EEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccc
Confidence 34444445555554555667777777776665555443 3211 1233444433221 24 3567788776422
Q ss_pred CchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHHH
Q 021180 134 DHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 183 (316)
Q Consensus 134 d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lLa 183 (316)
.-++||-+-++ |+|-.|.|.+...|+..+...+.
T Consensus 328 --------~Gidip~~~~V--------i~~~~p~~~~~~~s~~~~~Qr~G 361 (412)
T 3fht_A 328 --------RGIDVEQVSVV--------INFDLPVDKDGNPDNETYLHRIG 361 (412)
T ss_dssp --------SSCCCTTEEEE--------EESSCCBCSSSSBCHHHHHHHHT
T ss_pred --------cCCCccCCCEE--------EEECCCCCCCCCcchheeecccC
Confidence 33566655443 45556777666567666655443
No 153
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=23.67 E-value=1.2e+02 Score=23.15 Aligned_cols=76 Identities=8% Similarity=-0.004 Sum_probs=36.6
Q ss_pred CcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCccc----ccccCCceEEEeC--CCCC-chhHHHhh--hcCC
Q 021180 76 GDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ----TSFNEPRLLILTD--PRTD-HQPIKEAA--LGNI 146 (316)
Q Consensus 76 ~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~----~~f~eP~llVV~D--P~~d-~qaI~EAs--~lnI 146 (316)
-+||+|.......+.+.++-+..|..+... ..+|... ..-..||+||+-- +..+ ...+++.+ .-++
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~-----~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~ 95 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDVESVL-----QAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLET 95 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEE-----EESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSC
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcEEEE-----EECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCC
Confidence 356777776666666665555444332221 1112111 1124578665432 2222 22333332 3478
Q ss_pred CEEEEecCCC
Q 021180 147 PTIAFCDTDS 156 (316)
Q Consensus 147 PtIAL~DTds 156 (316)
|+|.+.+...
T Consensus 96 ~ii~ls~~~~ 105 (150)
T 4e7p_A 96 KVVVVTTFKR 105 (150)
T ss_dssp EEEEEESCCC
T ss_pred eEEEEeCCCC
Confidence 8888876544
No 154
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=23.58 E-value=82 Score=26.82 Aligned_cols=117 Identities=9% Similarity=0.062 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEccCchh------HHHHHHHHHHcCCceecCCccCCccCCccc--------ccccCCceEE
Q 021180 62 LQMAARVIVAIENPGDIIVQSARPYG------QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ--------TSFNEPRLLI 127 (316)
Q Consensus 62 L~~Aa~~I~~I~n~~~ILfVstr~~~------q~aV~kfA~~tGa~~I~grw~pGtLTN~~~--------~~f~eP~llV 127 (316)
-+.|++.+... ..++|.|++..... .+..++..+..|..........|.++.... .....|+.||
T Consensus 119 g~~a~~~L~~~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 197 (292)
T 3k4h_A 119 AREVAEYLISL-GHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIM 197 (292)
T ss_dssp HHHHHHHHHHT-TCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEE
T ss_pred HHHHHHHHHHC-CCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEE
Confidence 33455555443 34578888765322 123344445555543222112232221110 1124789999
Q ss_pred EeCCCCCchhHHHhhhcC--CC----EEEEecCC----CCCCcceEEecCCCCCchhHHHHH
Q 021180 128 LTDPRTDHQPIKEAALGN--IP----TIAFCDTD----SPMRYVDIGIPANNKGKHSIGCLF 179 (316)
Q Consensus 128 V~DP~~d~qaI~EAs~ln--IP----tIAL~DTd----s~~~~VD~pIP~NndS~~SI~Li~ 179 (316)
+.+-..-.-+++.+...| || +|++-|+. ..+.+.++-.|.-.-+..++.+++
T Consensus 198 ~~~d~~a~g~~~al~~~g~~vP~di~vig~d~~~~~~~~~p~lttv~~~~~~~g~~av~~l~ 259 (292)
T 3k4h_A 198 ATDDLIGLGVLSALSKKGFVVPKDVSIVSFNNALLSEIASPPLSTVDVNIYQLGYEAAKALV 259 (292)
T ss_dssp ESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCCHHHHHSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred EcChHHHHHHHHHHHHhCCCCCCeEEEEEecCcchhhccCCCceEEecCHHHHHHHHHHHHH
Confidence 876332233444444444 34 88886653 233445555544433444444443
No 155
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=23.57 E-value=35 Score=26.66 Aligned_cols=35 Identities=11% Similarity=-0.007 Sum_probs=26.2
Q ss_pred HHhhCCCcEEEEccCchhHHHHHHHHHHcCCceec
Q 021180 70 VAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIA 104 (316)
Q Consensus 70 ~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~ 104 (316)
..++.+..+.++.+.+...+-|.+||+..|..++.
T Consensus 49 ~~l~~Ge~L~Vl~dd~~a~~dIp~~~~~~G~~v~~ 83 (97)
T 1je3_A 49 PQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLD 83 (97)
T ss_dssp TTCCSSCEEEEEEBCSSSSCHHHHHHHHHTCSEEE
T ss_pred HcCCCCCEEEEEECCcchHHHHHHHHHHCCCEEEE
Confidence 34444555667888888778889999999987755
No 156
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=23.38 E-value=86 Score=28.11 Aligned_cols=35 Identities=9% Similarity=0.137 Sum_probs=24.9
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds 156 (316)
+..|.||+.....+...+.++...+||+|.+ |...
T Consensus 121 ~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~i-~~~~ 155 (348)
T 3bil_A 121 HGVDGIICVPNEECANQLEDLQKQGMPVVLV-DREL 155 (348)
T ss_dssp TTCSCEEECCCGGGHHHHHHHHHC-CCEEEE-SSCC
T ss_pred CCCCEEEEeCCCCChHHHHHHHhCCCCEEEE-cccC
Confidence 5789998887655556677888889999876 5543
No 157
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=23.32 E-value=1.9e+02 Score=28.77 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=25.3
Q ss_pred ccCCceEEEeCCCC------------CchhHHHhhhcCCCEEEEec
Q 021180 120 FNEPRLLILTDPRT------------DHQPIKEAALGNIPTIAFCD 153 (316)
Q Consensus 120 f~eP~llVV~DP~~------------d~qaI~EAs~lnIPtIAL~D 153 (316)
+..+|.||+..+.. ....|+++...++|+.|+|=
T Consensus 42 l~~~DglILpGgG~~~~~~~~l~~~~~~~~i~~~~~~g~PiLGIC~ 87 (555)
T 1jvn_A 42 ISGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPIMGIXV 87 (555)
T ss_dssp STTCSCEEEEECSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEEEH
T ss_pred cccCCEEEECCCCchHhHhhhhhhccHHHHHHHHHHcCCcEEEEch
Confidence 34678888876422 34578888888999999994
No 158
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=23.20 E-value=3.4e+02 Score=25.38 Aligned_cols=78 Identities=12% Similarity=0.019 Sum_probs=52.8
Q ss_pred cEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEe-CCCCCch-hHHHhhhcCCCEEEEecC
Q 021180 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILT-DPRTDHQ-PIKEAALGNIPTIAFCDT 154 (316)
Q Consensus 77 ~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~-DP~~d~q-aI~EAs~lnIPtIAL~DT 154 (316)
+|+|.+.+.+.+..+.++.+..|...+ +.++.++.......+.-|.|++. ...-+.. .|..+...++-.|+.+-+
T Consensus 3 ki~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~~ 79 (343)
T 2yq5_A 3 KIAMYNVSPIEVPYIEDWAKKNDVEIK---TTDQALTSATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIV 79 (343)
T ss_dssp EEEEESCCGGGHHHHHHHHHHHTCEEE---EESSCCSTTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESSS
T ss_pred eEEEEecCcccHHHHHHHHHhCCeEEE---ECCCCCCHHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECce
Confidence 689999999989899988887775442 34455554333345677878775 3455666 566555678888888765
Q ss_pred CCC
Q 021180 155 DSP 157 (316)
Q Consensus 155 ds~ 157 (316)
-.|
T Consensus 80 G~d 82 (343)
T 2yq5_A 80 GFN 82 (343)
T ss_dssp CCT
T ss_pred eec
Confidence 443
No 159
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=23.09 E-value=77 Score=27.36 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=33.3
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCC------EEEEecCC-----CCCCcceEEecCCCCCchhHHHH
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIP------TIAFCDTD-----SPMRYVDIGIPANNKGKHSIGCL 178 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIP------tIAL~DTd-----s~~~~VD~pIP~NndS~~SI~Li 178 (316)
..|+.||+.+-..-.-+++.+...|+- +|++-|+. ..+.+.++-.|.-.-+..++.++
T Consensus 196 ~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D~~~~~~~~~~p~lttv~~~~~~~g~~av~~l 264 (301)
T 3miz_A 196 DRPTAIMSGNDEMAIQIYIAAMALGLRIPQDVSIVGFDDFRTVTMALKPELTTAALPYYDLGREGAKWL 264 (301)
T ss_dssp TCCSEEEESSHHHHHHHHHHHHTTTCCHHHHCEEECSBCCHHHHTTSSSCCBEEECCHHHHHHHHHHHH
T ss_pred CCCcEEEECCHHHHHHHHHHHHHcCCCCCCCeeEEEeCCcHHHhccCCCCeeEEecCHHHHHHHHHHHH
Confidence 478999987643333455555555553 78877765 33445666665544444444443
No 160
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=22.74 E-value=1e+02 Score=26.35 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=20.0
Q ss_pred CCceEEEeCCCCCchhHHHhhhcCC--C----EEEEecCC
Q 021180 122 EPRLLILTDPRTDHQPIKEAALGNI--P----TIAFCDTD 155 (316)
Q Consensus 122 eP~llVV~DP~~d~qaI~EAs~lnI--P----tIAL~DTd 155 (316)
.|+.||+.+-..-..+++.+...|+ | +|++-|+.
T Consensus 188 ~~~ai~~~~d~~a~g~~~al~~~G~~vP~di~vig~d~~~ 227 (287)
T 3bbl_A 188 RPTAIMTLNDTMAIGAMAAARERGLTIGTDLAIIGFDDAP 227 (287)
T ss_dssp SCSEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCCT
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCCCCCEEEEEECCch
Confidence 6889988763322334444444443 4 88886664
No 161
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=22.74 E-value=86 Score=26.93 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=27.6
Q ss_pred cCCceEEEeCCCCCc-hhHHHhhhcCCCEEEEecCCCCCCcceEEe
Q 021180 121 NEPRLLILTDPRTDH-QPIKEAALGNIPTIAFCDTDSPMRYVDIGI 165 (316)
Q Consensus 121 ~eP~llVV~DP~~d~-qaI~EAs~lnIPtIAL~DTds~~~~VD~pI 165 (316)
+.+|.||+.....+. ..+.++...+||+|.+ |++.+-..+++..
T Consensus 75 ~~vdgii~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~ 119 (293)
T 2iks_A 75 RQVDAIIVSTSLPPEHPFYQRWANDPFPIVAL-DRALDREHFTSVV 119 (293)
T ss_dssp TTCSEEEECCSSCTTCHHHHTTTTSSSCEEEE-ESCCCTTTCEEEE
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHhCCCCEEEE-CCccCcCCCCEEE
Confidence 568888887654332 3567777889999877 4443323344443
No 162
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=22.70 E-value=1.7e+02 Score=21.27 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=42.3
Q ss_pred CCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccc----cc-------cCCceEEEeCCC---CC-chhHH
Q 021180 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT----SF-------NEPRLLILTDPR---TD-HQPIK 139 (316)
Q Consensus 75 ~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~----~f-------~eP~llVV~DP~---~d-~qaI~ 139 (316)
+.+||+|...+.....+.+..+..|..+.. ..++|.... .- ..||+||+ |.. .+ ...++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v-----~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~-d~~~~~~~g~~~~~ 75 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEV-----VTVRDGMEAMAYLRQEGEYANASRPDLILL-XLNLPKKDGREVLA 75 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEE-----EEECSHHHHHHHHTTCGGGGSCCCCSEEEE-CSSCSSSCHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceE-----EEECCHHHHHHHHHcccccccCCCCcEEEE-ecCCCcccHHHHHH
Confidence 457888888888877777777765542111 112222211 11 35776654 422 22 23444
Q ss_pred Hhhh----cCCCEEEEecCCC
Q 021180 140 EAAL----GNIPTIAFCDTDS 156 (316)
Q Consensus 140 EAs~----lnIPtIAL~DTds 156 (316)
+... -++|+|.+.+.+.
T Consensus 76 ~l~~~~~~~~~pii~ls~~~~ 96 (140)
T 1k68_A 76 EIKSDPTLKRIPVVVLSTSIN 96 (140)
T ss_dssp HHHHSTTGGGSCEEEEESCCC
T ss_pred HHHcCcccccccEEEEecCCc
Confidence 4443 4789999987654
No 163
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Probab=22.57 E-value=4.2e+02 Score=24.13 Aligned_cols=108 Identities=12% Similarity=0.084 Sum_probs=65.2
Q ss_pred hhCCCcEEEEccCch---hHHHHHHHHHHcCC---ceecCCccCCccCCcccccccCCc-eEEEeCCCC----CchhHHH
Q 021180 72 IENPGDIIVQSARPY---GQRAVLKFAKYTHA---HAIAGRHTPGTFTNQMQTSFNEPR-LLILTDPRT----DHQPIKE 140 (316)
Q Consensus 72 I~n~~~ILfVstr~~---~q~aV~kfA~~tGa---~~I~grw~pGtLTN~~~~~f~eP~-llVV~DP~~----d~qaI~E 140 (316)
+.+..+++|+|+... ..+.-+|+.+-+.. .|-.+-|..|.+.= -.++ .||++.+.. ....++|
T Consensus 209 l~~~~~~~~lG~G~~~~~A~e~aLKl~E~s~i~a~~~~~~E~~HGp~~~------v~~~~~vi~~~~~~~~~~~~~~~~~ 282 (342)
T 1j5x_A 209 LKEHDHFVFLGMSEFFGVSLESALKCIEMSLTFSEAYSTLEYRHGPKAL------VKKGTLVFMQKVSGMDEQEKRLRKE 282 (342)
T ss_dssp GGGCCEEEEECCTHHHHHHHHHHHHHHHHHCCEEEEECGGGGGTTGGGG------CCTTEEEEEECCTTCHHHHHHHHHH
T ss_pred hcCCCeEEEEcCCCCHHHHHHHHHHHHHHhhhheeeccHHHhcCCchhh------hCCCceEEEEECCchHHHHHHHHHH
Confidence 445678889998653 45555677776654 34455566665432 1222 344444422 2347889
Q ss_pred hhhcCCCEEEEecCCCCCCcceEEecCCCCCchh--HHHHHHHHHHHHHHhhcCC
Q 021180 141 AALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHS--IGCLFWLLARMVLQMRGTI 193 (316)
Q Consensus 141 As~lnIPtIAL~DTds~~~~VD~pIP~NndS~~S--I~Li~~lLaraVl~~rG~i 193 (316)
.+..+-.++.|.+.+ ++.+| .+ -... .-..+++|+..+-..||..
T Consensus 283 ~~~~g~~v~~i~~~~------~i~~p-~~-~l~pl~~~v~~qlla~~~A~~~G~d 329 (342)
T 1j5x_A 283 LESLGATVLEVGEGG------DIPVS-ND-WKSAFLRTVPAQILGYQKAISRGIS 329 (342)
T ss_dssp HHHTTCEEEEESTTS------SBCCC-CS-GGGGGGTTHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCeEEEEecCC------eEeec-HH-HHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999997654 35566 32 2211 1235778888888888874
No 164
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=22.42 E-value=1.7e+02 Score=23.03 Aligned_cols=63 Identities=8% Similarity=0.061 Sum_probs=39.4
Q ss_pred CCCcEEEEccCc-hhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCCchhHHHhhhcCCCEEE
Q 021180 74 NPGDIIVQSARP-YGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIA 150 (316)
Q Consensus 74 n~~~ILfVstr~-~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d~qaI~EAs~lnIPtIA 150 (316)
.+..|+|.|+-. ..+.-+.+..+..|... ++..+. .-++||+-+. ....=++.|..+|||+|.
T Consensus 34 ~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v----------~~sVSk---kTd~LV~G~~-~g~sK~~kA~~lgI~Ii~ 97 (109)
T 2k6g_A 34 EGLIFVITGVLESIERDEAKSLIERYGGKV----------TGNVSK---KTNYLVMGRD-SGQSKSDKAAALGTKIID 97 (109)
T ss_dssp TTCEEEEESBCSSCCHHHHHHHHHHTTCEE----------ESSCCT---TCCEEEECBC-CCHHHHHHHHHHTCEEEC
T ss_pred CCCEEEEeeeCCCCCHHHHHHHHHHcCCEe----------eCcccC---CceEEEECCC-CChHHHHHHHHcCCeEEe
Confidence 456688888864 35566667777766553 333332 2366776652 233567889999999873
No 165
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=22.40 E-value=1.4e+02 Score=29.27 Aligned_cols=73 Identities=15% Similarity=0.157 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCceecCCccCCccCCc-c--------------cccccC
Q 021180 61 KLQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ-M--------------QTSFNE 122 (316)
Q Consensus 61 kL~~Aa~~I~~I~n~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~-~--------------~~~f~e 122 (316)
.+..++..|..- +.-++++|.. ....+.+.+||+++|...++.---.|.|-.. . .. +.+
T Consensus 193 ~v~~~~~~l~~a--~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~~p~~~G~~g~~~~~~~~-~~~ 269 (563)
T 2uz1_A 193 DLDQALALLRKA--ERPVIVLGSEASRTARKTALSAFVAATGVPVFADYEGLSMLSGLPDAMRGGLVQNLYSFAKA-DAA 269 (563)
T ss_dssp HHHHHHHHHHHC--SSEEEEECHHHHHHTCHHHHHHHHHHHCCCEEECGGGGGGGTTSCGGGEEEEGGGGGGTTTT-TCC
T ss_pred HHHHHHHHHHcC--CCcEEEECCccccccHHHHHHHHHHHhCCcEEEcCcccCcCCCCCChhhcCCCCCCCHHHHh-hcC
Confidence 345555555443 3346677653 3456889999999998876543223444322 1 11 678
Q ss_pred CceEEEeCCCCCch
Q 021180 123 PRLLILTDPRTDHQ 136 (316)
Q Consensus 123 P~llVV~DP~~d~q 136 (316)
+|+||++..+-+..
T Consensus 270 aDlvl~iG~~~~~~ 283 (563)
T 2uz1_A 270 PDLVLMLGARFGLN 283 (563)
T ss_dssp CSEEEEESCCSSGG
T ss_pred CCEEEEECCCCccc
Confidence 99999999776543
No 166
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=22.35 E-value=1.1e+02 Score=23.69 Aligned_cols=23 Identities=0% Similarity=0.151 Sum_probs=13.6
Q ss_pred cEEEEccCchhHHHHHHHHHHcC
Q 021180 77 DIIVQSARPYGQRAVLKFAKYTH 99 (316)
Q Consensus 77 ~ILfVstr~~~q~aV~kfA~~tG 99 (316)
+||+|...+.....+.++.+..|
T Consensus 38 ~Ilivdd~~~~~~~l~~~L~~~g 60 (157)
T 3hzh_A 38 NVLIVDDSVFTVKQLTQIFTSEG 60 (157)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCHHHHHHHHHHHHhCC
Confidence 56666666666555555555544
No 167
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=22.24 E-value=2.7e+02 Score=21.93 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=20.8
Q ss_pred CCceEEEe-CCCCCchhHHHhhhcCCCEEEE
Q 021180 122 EPRLLILT-DPRTDHQPIKEAALGNIPTIAF 151 (316)
Q Consensus 122 eP~llVV~-DP~~d~qaI~EAs~lnIPtIAL 151 (316)
...+||++ +-..+...++-|...|||++.-
T Consensus 74 ~~~~iIlt~g~~~~~~i~~~A~~~~ipvl~t 104 (139)
T 2ioj_A 74 NVRCLILTGNLEPVQLVLTKAEERGVPVILT 104 (139)
T ss_dssp TEEEEEEETTCCCCHHHHHHHHHHTCCEEEC
T ss_pred CCcEEEEcCCCCCCHHHHHHHHHCCCeEEEE
Confidence 34566666 4455666777788889999853
No 168
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=22.00 E-value=55 Score=28.98 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=16.5
Q ss_pred CchhHHHhhhcCCCEEEEe
Q 021180 134 DHQPIKEAALGNIPTIAFC 152 (316)
Q Consensus 134 d~qaI~EAs~lnIPtIAL~ 152 (316)
+...|++|...++|+.|||
T Consensus 97 ~~~lir~a~~~~~PiLGIC 115 (254)
T 3fij_A 97 EIALVRAALDAGKPIFAIC 115 (254)
T ss_dssp HHHHHHHHHHTTCCEEEET
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 3578899999999999997
No 169
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=21.98 E-value=1.5e+02 Score=27.13 Aligned_cols=76 Identities=8% Similarity=0.102 Sum_probs=47.7
Q ss_pred HHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCCchhHHHhhhc
Q 021180 65 AARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALG 144 (316)
Q Consensus 65 Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d~qaI~EAs~l 144 (316)
|...+..| +.+.+++++|......+++.++++.. .| | ++.+|++. .+...++...
T Consensus 32 A~~A~~~V-~dg~vIgLGsGST~~~~i~~L~~~~~---------~g-l-----------~ItvVttS---~~ta~~l~~~ 86 (255)
T 3hhe_A 32 ALKALEFV-EDDMRLGIGSGSTVNEFIPLLGERVA---------NG-L-----------RVTCVATS---QYSEQLCHKF 86 (255)
T ss_dssp HHHHHTTC-CTTEEEEECCSHHHHHHHHHHHHHHH---------TT-C-----------CEEEEESS---HHHHHHHHHT
T ss_pred HHHHHHhC-CCCCEEEECCcHHHHHHHHHHHHhhc---------cC-C-----------cEEEEcCC---HHHHHHHHHc
Confidence 33333334 56899999999988888877766421 01 0 34455543 2445677778
Q ss_pred CCCEEEEecCCCCCCcceEEecCCC
Q 021180 145 NIPTIAFCDTDSPMRYVDIGIPANN 169 (316)
Q Consensus 145 nIPtIAL~DTds~~~~VD~pIP~Nn 169 (316)
|||++.+ + ....+|+.|=+=|
T Consensus 87 GI~l~~l---~-~~~~iD~afdGAD 107 (255)
T 3hhe_A 87 GVPISTL---E-KIPELDLDIDGAD 107 (255)
T ss_dssp TCCBCCT---T-TCCSBSEEEECCS
T ss_pred CCcEEec---c-cccccCEEEECCC
Confidence 9998865 2 2336888886654
No 170
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A*
Probab=21.58 E-value=1.6e+02 Score=28.23 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=19.7
Q ss_pred cCCceEEEeCCCCC-------------chhHHHhhhcCC
Q 021180 121 NEPRLLILTDPRTD-------------HQPIKEAALGNI 146 (316)
Q Consensus 121 ~eP~llVV~DP~~d-------------~qaI~EAs~lnI 146 (316)
.++.-++|.+|... .+|++||...||
T Consensus 249 gl~~g~lvanPIP~e~~i~~~~i~~~I~~Al~eA~~~gI 287 (335)
T 4gim_A 249 GLNGGLVVANPIPEQFAMPEHTINAAIDQAVAEAEAQGV 287 (335)
T ss_dssp TCCSCEEEECCCCGGGCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCceEEeCCCCchhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 46788889998755 357888888776
No 171
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=21.40 E-value=1.1e+02 Score=30.37 Aligned_cols=74 Identities=8% Similarity=-0.000 Sum_probs=42.3
Q ss_pred CCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccccccCCceEEEeCCCCC------chhHHHhhhcCCCE
Q 021180 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTD------HQPIKEAALGNIPT 148 (316)
Q Consensus 75 ~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~~f~eP~llVV~DP~~d------~qaI~EAs~lnIPt 148 (316)
..+|+++....+....+.+.-+..|.+..--.|. +......-..||.||+..-..+ ...++++...++|+
T Consensus 10 ~~~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~----~~~~~i~~~~~dgIILsGGp~sv~~~~~~~~~~~~~~~~~Pv 85 (527)
T 3tqi_A 10 QHRILILDFGSQYAQLIARRVREIGVYCELMPCD----IDEETIRDFNPHGIILSGGPETVTLSHTLRAPAFIFEIGCPV 85 (527)
T ss_dssp CSEEEEEECSCTTHHHHHHHHHHHTCEEEEEETT----CCSSSSTTTCCSEEEECCCCC---------CCCSTTTSSSCE
T ss_pred CCeEEEEECCCccHHHHHHHHHHCCCeEEEEECC----CCHHHHHhcCCCEEEECCcCcccccCCChhhHHHHHhcCCCE
Confidence 3568888776655556666667788876443331 1111111126788888852111 22344556678899
Q ss_pred EEEe
Q 021180 149 IAFC 152 (316)
Q Consensus 149 IAL~ 152 (316)
.|||
T Consensus 86 LGIC 89 (527)
T 3tqi_A 86 LGIC 89 (527)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9887
No 172
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=21.39 E-value=1.1e+02 Score=25.94 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=19.8
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcC--CC----EEEEecCC
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGN--IP----TIAFCDTD 155 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~ln--IP----tIAL~DTd 155 (316)
..|+.||+.+-..-.-+++.+...| || +|++-|+.
T Consensus 199 ~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 239 (296)
T 3brq_A 199 AKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFDDIA 239 (296)
T ss_dssp -CCSEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEESCCT
T ss_pred CCCCEEEECChHHHHHHHHHHHHcCCCCCCceEEEeecCch
Confidence 4689998876332223444444433 45 88886664
No 173
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=21.38 E-value=1.3e+02 Score=29.34 Aligned_cols=71 Identities=8% Similarity=0.184 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhCCCcEEEEccC---chhHHHHHHHHHHcCCceecCCccCCccCCccc--------ccccCCceEEEeC
Q 021180 62 LQMAARVIVAIENPGDIIVQSAR---PYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ--------TSFNEPRLLILTD 130 (316)
Q Consensus 62 L~~Aa~~I~~I~n~~~ILfVstr---~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~--------~~f~eP~llVV~D 130 (316)
+..++..|..- +.-++++|.. ....+.+.+||+++|...++.-.-.|.|-.... ..+.++|+||++.
T Consensus 201 i~~~~~~l~~a--~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG 278 (564)
T 2q28_A 201 VTSAISLLAKA--ERPLIILGKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVMLVG 278 (564)
T ss_dssp HHHHHHHHHHC--SSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCGGGHHHHHHHCSEEEEES
T ss_pred HHHHHHHHHcC--CCcEEEECcccccccHHHHHHHHHHHhCCCEEeccCccccCCCCChhhcChHHHhHhhcCCEEEEEC
Confidence 45555555443 3346777753 245688999999999987765444455532111 1246899999999
Q ss_pred CCCC
Q 021180 131 PRTD 134 (316)
Q Consensus 131 P~~d 134 (316)
.+-+
T Consensus 279 ~~~~ 282 (564)
T 2q28_A 279 ARLN 282 (564)
T ss_dssp CCCS
T ss_pred Cccc
Confidence 8765
No 174
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=21.10 E-value=61 Score=27.65 Aligned_cols=120 Identities=8% Similarity=-0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHh-hCCCcEEEEccCchh------HHHHHHHHHHc-CCceecCCccCCccCCccccc---------cc---C
Q 021180 63 QMAARVIVAI-ENPGDIIVQSARPYG------QRAVLKFAKYT-HAHAIAGRHTPGTFTNQMQTS---------FN---E 122 (316)
Q Consensus 63 ~~Aa~~I~~I-~n~~~ILfVstr~~~------q~aV~kfA~~t-Ga~~I~grw~pGtLTN~~~~~---------f~---e 122 (316)
+.+++.+... ...++|.|++..... .+..++..+.. |...+...++.-.-.+..... .. .
T Consensus 112 ~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (291)
T 3l49_A 112 AELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGD 191 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTS
T ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCC
Q ss_pred CceEEEeCCCCCchhHHHhhhcCC---CEEEEecCCC---------CCCcceEEecCCCCCchhHHHHHHHH
Q 021180 123 PRLLILTDPRTDHQPIKEAALGNI---PTIAFCDTDS---------PMRYVDIGIPANNKGKHSIGCLFWLL 182 (316)
Q Consensus 123 P~llVV~DP~~d~qaI~EAs~lnI---PtIAL~DTds---------~~~~VD~pIP~NndS~~SI~Li~~lL 182 (316)
|+.||+.+-..-.-+++.+...|+ .+|++-|+.. .|...++-.|.-.-+..++.+++.+|
T Consensus 192 ~~ai~~~~d~~a~g~~~al~~~g~~di~vvg~d~~~~~~~~i~~~~~p~lttv~~~~~~~g~~av~~l~~~i 263 (291)
T 3l49_A 192 VGAIWACWDVPMIGATQALQAAGRTDIRTYGVDGSPEFVEMVADPESPAGAVAAQQPSEIGKLAVQNVARHL 263 (291)
T ss_dssp CCEEEESSHHHHHHHHHHHHHTTCCSCEEEEEECCHHHHHHHHCTTSCEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred cCEEEECCCchHHHHHHHHHHcCCCCeEEEEecCCHHHHHHHHCCCCCeEEEEecCHHHHHHHHHHHHHHHh
No 175
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=21.02 E-value=1.8e+02 Score=21.25 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=40.3
Q ss_pred cEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccc----cccCCceEEEeC--CCCC-chhHHHhh--hcCCC
Q 021180 77 DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT----SFNEPRLLILTD--PRTD-HQPIKEAA--LGNIP 147 (316)
Q Consensus 77 ~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~----~f~eP~llVV~D--P~~d-~qaI~EAs--~lnIP 147 (316)
+||+|...+.....+.+..+..| +.+.+ .++|.... .-..||+||+-- |..+ ...+++.+ .-++|
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~g-~~v~~-----~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 76 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLLIKND-IEILA-----ELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGI 76 (134)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTT-EEEEE-----EESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSE
T ss_pred EEEEEcCCHHHHHHHHHHHhhCC-cEEEE-----EcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCe
Confidence 58888888888888877777766 32221 12222111 125688776543 2222 22333332 34788
Q ss_pred EEEEecCCCC
Q 021180 148 TIAFCDTDSP 157 (316)
Q Consensus 148 tIAL~DTds~ 157 (316)
+|.+.+....
T Consensus 77 ii~~s~~~~~ 86 (134)
T 3f6c_A 77 IIIVSAKNDH 86 (134)
T ss_dssp EEEEECC---
T ss_pred EEEEeCCCCh
Confidence 8888766543
No 176
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=20.95 E-value=1.4e+02 Score=25.53 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=23.4
Q ss_pred cCCceEEEeCCCCCc--hhHHHhhhcCCCEEEEecCCC
Q 021180 121 NEPRLLILTDPRTDH--QPIKEAALGNIPTIAFCDTDS 156 (316)
Q Consensus 121 ~eP~llVV~DP~~d~--qaI~EAs~lnIPtIAL~DTds 156 (316)
+.+|.||+.....+. ..++++...+||+|.+ |++.
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~ 92 (283)
T 2ioy_A 56 QKVDVLLINPVDSDAVVTAIKEANSKNIPVITI-DRSA 92 (283)
T ss_dssp TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCC
T ss_pred cCCCEEEEeCCchhhhHHHHHHHHHCCCeEEEe-cCCC
Confidence 456778776443332 4678888889999876 5443
No 177
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=20.83 E-value=3.3e+02 Score=22.51 Aligned_cols=77 Identities=4% Similarity=0.002 Sum_probs=47.3
Q ss_pred cHHHHHHHHHcCceecc-ccCCCCCcccceeeecCCccccCHHHHHHHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHH
Q 021180 15 KEADIQMMLAAEVHLGT-KNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLK 93 (316)
Q Consensus 15 ke~~i~~LLaAgvHlG~-~~~n~~M~~YIyg~R~dGi~IINL~kT~ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~k 93 (316)
..+.++.|.+.|..||. +..++.|. -++..+..+.|.++.+.|..+-...-.+|---.-.....+.+
T Consensus 45 ~~~~~~~~~~~GheIg~Ht~~H~~l~------------~ls~~~~~~ei~~~~~~l~~~~G~~~~~fr~P~G~~~~~~~~ 112 (195)
T 2cc0_A 45 NPSLVRAQVDAGMWVANHSYTHPHMT------------QLGQAQMDSEISRTQQAIAGAGGGTPKLFRPPYGETNATLRS 112 (195)
T ss_dssp CHHHHHHHHHTTCEEEECCSSCCCGG------------GSCHHHHHHHHHHHHHHHHHTTSCCCSEECCGGGCCCHHHHH
T ss_pred CHHHHHHHHHCCCEEEcCCCCccccc------------cCCHHHHHHHHHHHHHHHHHHhCCCCCEEECCCCCcCHHHHH
Confidence 45789999999988994 43344332 245677788888888888876222222332111112345667
Q ss_pred HHHHcCCcee
Q 021180 94 FAKYTHAHAI 103 (316)
Q Consensus 94 fA~~tGa~~I 103 (316)
.++..|-.++
T Consensus 113 ~~~~~G~~~v 122 (195)
T 2cc0_A 113 VEAKYGLTEV 122 (195)
T ss_dssp HHHHTTCEEC
T ss_pred HHHHCCCeEE
Confidence 7888887665
No 178
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=20.73 E-value=1.1e+02 Score=26.90 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=23.2
Q ss_pred ccCCceEEEeCCC--------CCchhHHHhhhcCCCEEE
Q 021180 120 FNEPRLLILTDPR--------TDHQPIKEAALGNIPTIA 150 (316)
Q Consensus 120 f~eP~llVV~DP~--------~d~qaI~EAs~lnIPtIA 150 (316)
++.-|++|+.... .-...+.||..+|+|+|+
T Consensus 270 ~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~ 308 (394)
T 3okp_A 270 LAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIA 308 (394)
T ss_dssp HHHCSEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEE
T ss_pred HHhCCEEEecCccccccccccccCcHHHHHHHcCCCEEE
Confidence 4566777776543 225688999999999999
No 179
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=20.59 E-value=1e+02 Score=23.72 Aligned_cols=64 Identities=9% Similarity=-0.001 Sum_probs=41.7
Q ss_pred CCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHHHHHHHHhhcCCCCCCCccceeecccccCcc
Q 021180 145 NIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPE 212 (316)
Q Consensus 145 nIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lLaraVl~~rG~i~~~~~w~v~~dl~fyrdpe 212 (316)
+.-+|.=|+-..|+++..+-+-.=.+ ..-++..|-++--..|..+.+...|..+|+|-|+.|..
T Consensus 29 ~~vtVt~V~vs~Dl~~AkVyvs~~~~----~~~~~~~L~~a~g~iR~~l~~~l~lr~~P~L~F~~D~s 92 (95)
T 2dyj_A 29 FLLTVEAVRLSKDGSVLSVYVEAFRE----EEGALRALSRAERRLVAALARRVRMRRLPRLEFLPWRA 92 (95)
T ss_dssp TTCEEEEEEECTTSSEEEEEEECSSC----HHHHHHHHHHTHHHHHHHHHTTSCCSSCCEEEEEEGGG
T ss_pred CcEEEEEEEECCCCCEEEEEEEeCCC----HHHHHHHHHHhHHHHHHHHHhhcCCccCCeEEEEEcCC
Confidence 34566667777777765444322212 33445556666666777777677799999999998864
No 180
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=20.49 E-value=84 Score=25.43 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCccc----cccc--CCceEEEeCCC
Q 021180 60 EKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ----TSFN--EPRLLILTDPR 132 (316)
Q Consensus 60 ekL~~Aa~~I~~I~n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~----~~f~--eP~llVV~DP~ 132 (316)
.|+.....++.....+.-|+|++++.....+...+.+ .|... ..+.|.++.... ..|+ ..++||.||..
T Consensus 20 ~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~-~~~~~---~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQ-DGHQV---SLLSGELTVEQRASIIQRFRDGKEKVLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHT-TTCCE---EEECSSCCHHHHHHHHHHHHTTSCSEEEECCSC
T ss_pred hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH-cCCcE---EEEeCCCCHHHHHHHHHHHHcCCCeEEEEecch
Confidence 3555555555554444456677777666555444333 33221 123344443322 1243 56778877753
No 181
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=20.34 E-value=55 Score=27.97 Aligned_cols=56 Identities=14% Similarity=-0.049 Sum_probs=34.2
Q ss_pred cCCceEEEeCCCCCchhHHHhhhcCCCEEEEecCCCCCCcceEEecCCCCCchhHHHHHHHH
Q 021180 121 NEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182 (316)
Q Consensus 121 ~eP~llVV~DP~~d~qaI~EAs~lnIPtIAL~DTds~~~~VD~pIP~NndS~~SI~Li~~lL 182 (316)
+.+|.||+.....+...+.+....+||+|.+ |++.+ .+++...- ......++...|
T Consensus 67 ~~vdgiIi~~~~~~~~~~~~~~~~~iPvV~~-~~~~~--~~~~V~~D---~~~~~~~a~~~L 122 (289)
T 3g85_A 67 NSFDAAIIANISNYDLEYLNKASLTLPIILF-NRLSN--KYSSVNVD---NYKMGEKASLLF 122 (289)
T ss_dssp TCCSEEEESSCCHHHHHHHHHCCCSSCEEEE-SCCCS--SSEEEEEC---HHHHHHHHHHHH
T ss_pred cCCCEEEEecCCcccHHHHHhccCCCCEEEE-CCCCC--CCCEEEeC---HHHHHHHHHHHH
Confidence 6789999987655555667777789999876 54432 34554332 234444444333
No 182
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=20.20 E-value=1.7e+02 Score=21.42 Aligned_cols=77 Identities=10% Similarity=0.111 Sum_probs=41.9
Q ss_pred CCCcEEEEccCchhHHHHHHHHHHcCCceecCCccCCccCCcccc----cccCCceEEEeC--C-CCC-chhHHHhhh-c
Q 021180 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQT----SFNEPRLLILTD--P-RTD-HQPIKEAAL-G 144 (316)
Q Consensus 74 n~~~ILfVstr~~~q~aV~kfA~~tGa~~I~grw~pGtLTN~~~~----~f~eP~llVV~D--P-~~d-~qaI~EAs~-l 144 (316)
+..+||+|...+.....+.+..+..|...+. ..+|.... .-..||+||+-- + ..+ ...+++... -
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~------~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~ 81 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLG------VFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGC 81 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEE------EESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHS
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEE------EECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCC
Confidence 4567899998888777777766665543221 11221111 114588776542 2 122 223333222 4
Q ss_pred CCCEEEEecCCC
Q 021180 145 NIPTIAFCDTDS 156 (316)
Q Consensus 145 nIPtIAL~DTds 156 (316)
++|+|.+.+...
T Consensus 82 ~~~ii~ls~~~~ 93 (140)
T 3cg0_A 82 NLPIIFITSSQD 93 (140)
T ss_dssp CCCEEEEECCCC
T ss_pred CCCEEEEecCCC
Confidence 899999876543
No 183
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=20.19 E-value=1.6e+02 Score=25.16 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhCCCcEEEEccCchh-----HHHHHHHHHHcCCceecCCccCCccCCccc--------ccccCCceEEEe
Q 021180 63 QMAARVIVAIENPGDIIVQSARPYG-----QRAVLKFAKYTHAHAIAGRHTPGTFTNQMQ--------TSFNEPRLLILT 129 (316)
Q Consensus 63 ~~Aa~~I~~I~n~~~ILfVstr~~~-----q~aV~kfA~~tGa~~I~grw~pGtLTN~~~--------~~f~eP~llVV~ 129 (316)
+.|++.+... ..++|.|++..... .+..++..+..|..+.. ....|.++.... .....|+.||+.
T Consensus 115 ~~a~~~L~~~-G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 192 (289)
T 3k9c_A 115 TLAVDHLTEL-GHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASA-TVVTGGTTETEGAEGMHTLLEMPTPPTAVVAF 192 (289)
T ss_dssp HHHHHHHHHT-TCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGE-EEECCCSSHHHHHHHHHHHHTSSSCCSEEEES
T ss_pred HHHHHHHHHC-CCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCc-cEEECCCCHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 3445544442 34579998764321 22334455555654322 233443332111 112578999987
Q ss_pred CCCCCchhHHHhhhcC--CC----EEEEecCCC----CCCcceEEecCCCCCchhHHHH
Q 021180 130 DPRTDHQPIKEAALGN--IP----TIAFCDTDS----PMRYVDIGIPANNKGKHSIGCL 178 (316)
Q Consensus 130 DP~~d~qaI~EAs~ln--IP----tIAL~DTds----~~~~VD~pIP~NndS~~SI~Li 178 (316)
+-..-.-+++.+...| || +|++=|+.. .+.+.++-.|.-.-+..++.++
T Consensus 193 ~d~~A~g~~~al~~~g~~vP~di~vig~D~~~~~~~~~p~lttv~~~~~~~g~~a~~~l 251 (289)
T 3k9c_A 193 NDRCATGVLDLLVRSGRDVPADISVVGYDDSRLARIPHVQMTTISQDATHMAEAAVDGA 251 (289)
T ss_dssp SHHHHHHHHHHHHHTTCCTTTTCEEEEEECCTTTTCTTTCCEEEECCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCCCCceEEEEECCHHHHhcCCCCcceEecCHHHHHHHHHHHH
Confidence 6332223344444443 33 888877642 2234455554443344444433
No 184
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=20.18 E-value=2.1e+02 Score=28.09 Aligned_cols=31 Identities=6% Similarity=-0.048 Sum_probs=21.3
Q ss_pred ccCCceEEEeCCCCC-chhHHHhhhcCCCEEE
Q 021180 120 FNEPRLLILTDPRTD-HQPIKEAALGNIPTIA 150 (316)
Q Consensus 120 f~eP~llVV~DP~~d-~qaI~EAs~lnIPtIA 150 (316)
++.-|++|+..-.+. -..+.||...|+|+|+
T Consensus 399 ~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~ 430 (536)
T 3vue_A 399 MAGADVLAVPSRFEPCGLIQLQGMRYGTPCAC 430 (536)
T ss_dssp HHHCSEEEECCSCCSSCSHHHHHHHTTCCEEE
T ss_pred HHhhheeecccccCCCCHHHHHHHHcCCCEEE
Confidence 344566666543221 4578999999999998
Done!