RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 021180
(316 letters)
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 379 bits (975), Expect = e-133
Identities = 139/227 (61%), Positives = 175/227 (77%)
Query: 5 TATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQM 64
++ P+ L+ KE DI+ MLA + H+GTKN + M++YV+KR +G++IINL KTWEKL++
Sbjct: 1 VSSGPKVLTPKEDDIKKMLACKCHIGTKNLENAMKKYVYKRTKEGVHIINLAKTWEKLKL 60
Query: 65 AARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPR 124
AARVI AIENP D++V S+RPYGQRAVLKFA+YT A AIAGR TPGTFTNQ+Q F EPR
Sbjct: 61 AARVIAAIENPADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPR 120
Query: 125 LLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLAR 184
LLI+TDPRTDHQ I+EA+ NIP IA CDTDSP+ YVDI IP NN+GK SI ++WLLAR
Sbjct: 121 LLIVTDPRTDHQAIREASYVNIPVIALCDTDSPLEYVDIAIPCNNRGKESIALMYWLLAR 180
Query: 185 MVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETAAIDYATAE 231
VL++RGT+ +WDVMVDLFF+R+PEE ++ EE A
Sbjct: 181 EVLRLRGTLPRDEEWDVMVDLFFWRDPEEAEEKEEAAAETAGVEDAA 227
>gnl|CDD|188101 TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosolic)/S2(archaeal).
This model describes the ribosomal protein of the
cytosol and of Archaea, homologous to S2 of bacteria. It
is designated typically as Sa in eukaryotes and Sa or S2
in the archaea. TIGR01011 describes the related protein
of organelles and bacteria [Protein synthesis, Ribosomal
proteins: synthesis and modification].
Length = 196
Score = 362 bits (931), Expect = e-128
Identities = 116/197 (58%), Positives = 154/197 (78%), Gaps = 1/197 (0%)
Query: 14 QKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIE 73
+ + M LAA VH+GT+N F ME++++K R+DG+Y+++L KT E+L++AA+ +V IE
Sbjct: 1 EYLVPVDMYLAAGVHIGTQNKTFDMEKFIYKVRSDGLYVLDLRKTDERLRVAAKFLVRIE 60
Query: 74 NPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT 133
P DI+V SAR YGQ+ VLKFAKYT A AIAGR TPGTFTN MQ SF EP ++++TDPR
Sbjct: 61 -PQDILVVSARIYGQKPVLKFAKYTGARAIAGRFTPGTFTNPMQKSFREPEVVVVTDPRA 119
Query: 134 DHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 193
DHQ +KEA+ IP +A CDTD+P+RYVD+ IP NNKG+ S+ ++WLLAR +L+MRGTI
Sbjct: 120 DHQAVKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGRRSLALIYWLLAREILRMRGTI 179
Query: 194 RPGHKWDVMVDLFFYRE 210
P KWDVMV+LFFYR+
Sbjct: 180 SPDQKWDVMVELFFYRD 196
>gnl|CDD|100106 cd01425, RPS2, Ribosomal protein S2 (RPS2), involved in formation
of the translation initiation complex, where it might
contact the messenger RNA and several components of the
ribosome. It has been shown that in Escherichia coli
RPS2 is essential for the binding of ribosomal protein
S1 to the 30s ribosomal subunit. In humans, most likely
in all vertebrates, and perhaps in all metazoans, the
protein also functions as the 67 kDa laminin receptor
(LAMR1 or 67LR), which is formed from a 37 kDa
precursor, and is overexpressed in many tumors. 67LR is
a cell surface receptor which interacts with a variety
of ligands, laminin-1 and others. It is assumed that the
ligand interactions are mediated via the conserved
C-terminus, which becomes extracellular as the protein
undergoes conformational changes which are not well
understood. Specifically, a conserved palindromic motif,
LMWWML, may participate in the interactions. 67LR plays
essential roles in the adhesion of cells to the basement
membrane and subsequent signalling events, and has been
linked to several diseases. Some evidence also suggests
that the precursor of 67LR, 37LRP is also present in the
nucleus in animals, where it appears associated with
histones.
Length = 193
Score = 221 bits (566), Expect = 2e-72
Identities = 72/194 (37%), Positives = 98/194 (50%), Gaps = 28/194 (14%)
Query: 22 MLAAEVHLGTKNC--DFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIE-NPGDI 78
+L A VHLG K + +M+ Y++ RN GI+II+L KT EKL++A I I G I
Sbjct: 1 LLEAGVHLGHKTRRWNPKMKPYIYGERN-GIHIIDLEKTLEKLRLALNFIANIAAKGGKI 59
Query: 79 IVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTS------------------- 119
+ +P QRAV KFA+ T + + GR GT TN
Sbjct: 60 LFVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLG 119
Query: 120 -----FNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHS 174
F P L+I+ DPR +HQ I+EA+ IP IA DT+ +D IPAN+ S
Sbjct: 120 GIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNCDPDLIDYPIPANDDSIRS 179
Query: 175 IGCLFWLLARMVLQ 188
I + WLLAR +L+
Sbjct: 180 IALILWLLARAILE 193
>gnl|CDD|235201 PRK04020, rps2P, 30S ribosomal protein S2; Provisional.
Length = 204
Score = 204 bits (521), Expect = 1e-65
Identities = 80/188 (42%), Positives = 122/188 (64%), Gaps = 1/188 (0%)
Query: 19 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDI 78
++ LAA VH+GT+ MER++++ R DG+Y++++ KT E++++AA+ + + P I
Sbjct: 12 LEEYLAAGVHIGTQQKTKDMERFIYRVRPDGLYVLDVRKTDERIRIAAKFL-SRYEPEKI 70
Query: 79 IVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPI 138
+V S+R YGQ+ V KFA+ A AI GR PGT TN + EP ++++TDPR D Q +
Sbjct: 71 LVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRGDAQAV 130
Query: 139 KEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHK 198
KEA IP +A CDTD+ VD+ IP NNKG+ ++ ++WLLAR +L+ RG I+P
Sbjct: 131 KEAIEVGIPVVALCDTDNLTSNVDLVIPTNNKGRKALALVYWLLAREILRERGEIKPDED 190
Query: 199 WDVMVDLF 206
V V+ F
Sbjct: 191 LPVPVEDF 198
>gnl|CDD|215856 pfam00318, Ribosomal_S2, Ribosomal protein S2.
Length = 205
Score = 202 bits (515), Expect = 1e-64
Identities = 69/206 (33%), Positives = 94/206 (45%), Gaps = 38/206 (18%)
Query: 22 MLAAEVHLG--TKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI-ENPGDI 78
+L A VH G T+ + +M+ Y++ RN GI+II+L KT EKL+ AA I I G I
Sbjct: 1 LLEAGVHFGHQTRRWNPKMKPYIYGERN-GIHIIDLEKTLEKLRKAANFIKEIAAKGGKI 59
Query: 79 IVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQ----------------------- 115
+ + Q AV KFAK T + GR GT TN
Sbjct: 60 LFVGTKKQAQEAVKKFAKRTGQFYVNGRWLGGTLTNWKTIKKSIKRLEELSKKEALKLKR 119
Query: 116 ----MQTSFNE-------PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIG 164
++ P L+I+ DP +H IKEA+ IP IA DT+ +D
Sbjct: 120 ELEKLEKYLGGIKNMKKLPDLVIVVDPNKEHIAIKEASKLGIPVIAIVDTNCDPDLIDYP 179
Query: 165 IPANNKGKHSIGCLFWLLARMVLQMR 190
IP N+ SI + WLLAR +L+ R
Sbjct: 180 IPGNDDSIRSIALILWLLARAILEGR 205
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 180 bits (459), Expect = 2e-55
Identities = 71/255 (27%), Positives = 108/255 (42%), Gaps = 55/255 (21%)
Query: 17 ADIQM--MLAAEVHLGTKNC--DFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAI 72
A + M +L A VH G + + +M+ ++F RN GI+II+L KT E+L+ A + + I
Sbjct: 2 AVVSMKQLLEAGVHFGHQTRRWNPKMKPFIFGERN-GIHIIDLQKTLERLREAYKFLRRI 60
Query: 73 -ENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTN---------------QM 116
N G I+ + Q V +FA+ T A+ + GR G TN +M
Sbjct: 61 AANGGKILFVGTKKQAQEPVKEFAERTGAYYVNGRWLGGMLTNFKTIRKSIKRLKELEKM 120
Query: 117 QTSFNE------------------------------PRLLILTDPRTDHQPIKEAALGNI 146
+ + P +L + DPR + +KEA I
Sbjct: 121 EEDGFDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLFVIDPRKEKIAVKEANKLGI 180
Query: 147 PTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 206
P +A DT+ VD IP N+ SI ++WLLAR +L+ RG + + D
Sbjct: 181 PVVALVDTNCDPDGVDYVIPGNDDAIRSIALIYWLLARAILEGRGGALDEEEAAIEED-- 238
Query: 207 FYREPEETKQAEEEE 221
E EE + EE
Sbjct: 239 --EEVEEFEAKEEAA 251
>gnl|CDD|130084 TIGR01011, rpsB_bact, ribosomal protein S2, bacterial type. This
model describes the bacterial, ribosomal, and
chloroplast forms of ribosomal protein S2. TIGR01012
describes the archaeal and cytosolic forms [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 225
Score = 68.5 bits (168), Expect = 1e-13
Identities = 53/219 (24%), Positives = 82/219 (37%), Gaps = 50/219 (22%)
Query: 22 MLAAEVHLG--TKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMA-ARVIVAIENPGDI 78
+L A VH G T+ + +M+ ++F RN GI+II+L KT + L+ A V N G I
Sbjct: 7 LLEAGVHFGHQTRRWNPKMKPFIFGERN-GIHIIDLQKTLQLLKEAYNFVKDVAANGGKI 65
Query: 79 IVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTN---------------QMQTSFNE- 122
+ + + + + A+ + R G TN +M+
Sbjct: 66 LFVGTKKQAKEIIKEEAERCGMFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEEDGTFD 125
Query: 123 ------------------------------PRLLILTDPRTDHQPIKEAALGNIPTIAFC 152
P LL + DP + + EA IP +A
Sbjct: 126 DLTKKEALMLSREKEKLEKSLGGIKDMKKLPDLLFVIDPVKEKIAVAEARKLGIPVVAIV 185
Query: 153 DTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191
DT+ VD IP N+ SI L L+A VL+ +
Sbjct: 186 DTNCDPDLVDYPIPGNDDAIRSIRLLTNLIADAVLEGKQ 224
>gnl|CDD|177007 CHL00067, rps2, ribosomal protein S2.
Length = 230
Score = 67.6 bits (166), Expect = 3e-13
Identities = 58/233 (24%), Positives = 81/233 (34%), Gaps = 63/233 (27%)
Query: 18 DIQMMLAAEVHLG--TKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMA-ARVIVAIEN 74
+++ ML A VH G T+ + +M Y++ RN GI+IINL +T L A V A
Sbjct: 9 NLEEMLEAGVHFGHQTRKWNPKMAPYIYAERN-GIHIINLVQTARFLSEACDLVFDAASK 67
Query: 75 PGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRT- 133
+ + V A H + R G TN S + RL L D R
Sbjct: 68 GKKFLFVGTKKQAADLVASAAIRARCHYVNKRWLGGMLTNW---STTKTRLQKLRDLRME 124
Query: 134 ------DHQPIKEAA------------LG------------------------------N 145
+ P KEAA LG
Sbjct: 125 EKTGLFNRLPKKEAAILKRQLSRLEKYLGGIKYMTKLPDIVIIIDQQEEYTALRECRKLG 184
Query: 146 IPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHK 198
IPTI+ DT+ DI IPAN+ +I + +L ++ I G
Sbjct: 185 IPTISILDTNCDPDLADIPIPANDD---AIASIKLILNKLTTA----ICEGRS 230
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 49.8 bits (120), Expect = 5e-07
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 123 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182
P L + DP +H +KEA IP +A DT+ VD IP N+ SI +
Sbjct: 158 PDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLYTSKI 217
Query: 183 ARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQAEEEETAA 224
A +L+ R G + + E EE ++ EEE A
Sbjct: 218 ADAILEGRQ----GRLAEAAEEEEEEAEEEEEEEEEEEAEEA 255
Score = 40.9 bits (97), Expect = 4e-04
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 17 ADIQM--MLAAEVHLG--TKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVI 69
A + M +L A VH G T+ + +M+ Y+F RN GI+II+L KT L A +
Sbjct: 2 AVVSMKQLLEAGVHFGHQTRRWNPKMKPYIFGERN-GIHIIDLQKTVPMLDEAYNFV 57
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 34.1 bits (79), Expect = 0.092
Identities = 21/69 (30%), Positives = 23/69 (33%)
Query: 245 QIADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAP 304
Q GG P G AA AA PA +AAV AA P
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPP 447
Query: 305 DVSAAPPPT 313
+AAP P
Sbjct: 448 APAAAPQPA 456
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 34.2 bits (79), Expect = 0.11
Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 249 GGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSA 308
G P P AAPAA A AP AA AP A AP +
Sbjct: 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPA------PAAAAPAAAAAPAPAAAPQPAPAPAP 437
Query: 309 APPPTG 314
AP P
Sbjct: 438 APAPPS 443
Score = 32.3 bits (74), Expect = 0.42
Identities = 12/68 (17%), Positives = 13/68 (19%)
Query: 247 ADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDV 306
A A A G AA APP A A
Sbjct: 632 AAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPA 691
Query: 307 SAAPPPTG 314
+ A
Sbjct: 692 APAGAAPA 699
Score = 30.7 bits (70), Expect = 1.2
Identities = 22/102 (21%), Positives = 24/102 (23%)
Query: 211 PEETKQAEEEETAAIDYATAEYNTNLTSGDQWPSQIADGGWAGGEVQKPIPGVPYFPEAA 270
P A A AE + G P AA
Sbjct: 618 PAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAA 677
Query: 271 PAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 312
PAA P A PA A AP AA + P
Sbjct: 678 PAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAA 719
Score = 30.7 bits (70), Expect = 1.2
Identities = 17/74 (22%), Positives = 22/74 (29%)
Query: 243 PSQIADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVT 302
P Q A G A +P P+ P PAP A APP + +
Sbjct: 721 PPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPS 780
Query: 303 APDVSAAPPPTGWD 316
+ A D
Sbjct: 781 EEEEMAEDDAPSMD 794
Score = 30.3 bits (69), Expect = 1.7
Identities = 19/82 (23%), Positives = 22/82 (26%), Gaps = 6/82 (7%)
Query: 237 TSGDQWPSQIADGGWAG------GEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPM 290
GD WP++ A G A A P G D PP
Sbjct: 664 DGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQ 723
Query: 291 AAVTAPPMAAVTAPDVSAAPPP 312
AA A + V P P
Sbjct: 724 AAQGASAPSPAADDPVPLPPEP 745
>gnl|CDD|152353 pfam11918, DUF3436, Domain of unknown function (DUF3436). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is about 50
amino acids in length. This domain is found associated
with pfam03572. This domain has two conserved sequence
motifs: DPRL and SYEP.
Length = 55
Score = 30.6 bits (70), Expect = 0.11
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 112 FTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIP 147
T +Q+S N+PRL+I +P P + AL N+
Sbjct: 4 LTAGVQSSLNDPRLVISYEPSYLEAPQQAPALPNLT 39
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 33.7 bits (78), Expect = 0.14
Identities = 17/68 (25%), Positives = 18/68 (26%)
Query: 247 ADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDV 306
A P A A P A P P AA A AA A
Sbjct: 45 TAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAA 104
Query: 307 SAAPPPTG 314
+AAP
Sbjct: 105 AAAPAAAA 112
Score = 29.9 bits (68), Expect = 2.1
Identities = 17/71 (23%), Positives = 18/71 (25%), Gaps = 7/71 (9%)
Query: 243 PSQIADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVT 302
+ A A P AAPA P A AP A AA
Sbjct: 42 AAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPP-------AAAAPAAPPKPAAAAAAAA 94
Query: 303 APDVSAAPPPT 313
AP A
Sbjct: 95 APAAPPAAAAA 105
Score = 28.7 bits (65), Expect = 5.1
Identities = 15/49 (30%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 265 YFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPT 313
Y P + A T A A AA A A AP AA P
Sbjct: 36 YGPGSTAAPT---AAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPA 81
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 33.4 bits (77), Expect = 0.15
Identities = 15/55 (27%), Positives = 16/55 (29%)
Query: 254 GEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSA 308
GE P A AA AP AA AP PD+ A
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPA 135
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 33.3 bits (77), Expect = 0.16
Identities = 12/46 (26%), Positives = 15/46 (32%)
Query: 267 PEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 312
PE P + P A P +A AP + A AP
Sbjct: 368 PEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAV 413
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 32.9 bits (75), Expect = 0.24
Identities = 22/67 (32%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 249 GGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAP-PMAAVTAPDVS 307
GG GG V + G P A +G AV A AA A P AA A
Sbjct: 365 GGAPGGGVPARVAGA--VPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATR 422
Query: 308 AAPPPTG 314
A PP
Sbjct: 423 AEAPPAA 429
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 32.1 bits (73), Expect = 0.29
Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 257 QKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPT 313
+P P P P PA P AA AP A + P A+PPP
Sbjct: 142 PQPPPPAPVVMMQPPPPHA--------MPPASPPAAQPAPSAPASSPPPTPASPPPA 190
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 32.2 bits (73), Expect = 0.40
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 250 GWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAA 309
G +GG + APAA P PA P AA A P AA A V+AA
Sbjct: 366 GQSGGGAGPATAAAAPVAQPAPAAAAPAAA---APAPAAPPAAPAAAPAAAAAARAVAAA 422
Query: 310 P 310
P
Sbjct: 423 P 423
Score = 30.2 bits (68), Expect = 1.6
Identities = 19/72 (26%), Positives = 21/72 (29%), Gaps = 6/72 (8%)
Query: 243 PSQIADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVT 302
P +A A P P AAPAA A P A A A
Sbjct: 430 PEALAAARQASARGPGGAPAPAPAPAAAPAAAAR------PAAAGPRPVAAAAAAAPARA 483
Query: 303 APDVSAAPPPTG 314
AP + AP
Sbjct: 484 APAAAPAPADDD 495
Score = 30.2 bits (68), Expect = 1.8
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 278 GGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPT 313
G G A PA AA A P A AP +A P
Sbjct: 366 GQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAA 401
Score = 29.1 bits (65), Expect = 4.2
Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 251 WAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAP 310
W + P P P+AAPA V AP AA AP +AA
Sbjct: 499 WEELPPEFASPA-PAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAAT 557
Query: 311 PP 312
P
Sbjct: 558 EP 559
Score = 27.9 bits (62), Expect = 8.9
Identities = 15/67 (22%), Positives = 16/67 (23%), Gaps = 6/67 (8%)
Query: 252 AGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAV------TAPPMAAVTAPD 305
A P A AA G PAP A P A
Sbjct: 414 AAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVA 473
Query: 306 VSAAPPP 312
+AA P
Sbjct: 474 AAAAAAP 480
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 31.6 bits (72), Expect = 0.52
Identities = 17/66 (25%), Positives = 20/66 (30%), Gaps = 5/66 (7%)
Query: 247 ADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDV 306
A A E + P P AAP A PA AA + P A A
Sbjct: 369 AAEAAAPAEKKTPARPEAAAPAAAPVAQAAAA-----PAPAAAPAAAASAPAAPPAAAPP 423
Query: 307 SAAPPP 312
+ P
Sbjct: 424 APVAAP 429
Score = 31.2 bits (71), Expect = 0.83
Identities = 15/55 (27%), Positives = 15/55 (27%)
Query: 258 KPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 312
KP A A P AA AP A A AAPP
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPA 419
Score = 29.7 bits (67), Expect = 2.6
Identities = 17/46 (36%), Positives = 19/46 (41%)
Query: 267 PEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 312
AA A P V AP AA A P AA A ++ APP
Sbjct: 408 AAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 31.3 bits (71), Expect = 0.64
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 247 ADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDV 306
A GG + KP+ P AA + A P A +A A T P V
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQ-PAGTPPTV 427
Query: 307 SAAPP 311
S PP
Sbjct: 428 SVDPP 432
>gnl|CDD|183428 PRK12311, rpsB, 30S ribosomal protein S2/unknown domain fusion
protein; Provisional.
Length = 326
Score = 31.3 bits (71), Expect = 0.69
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 123 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 182
P LL + D + I+EA IP A DT+ + +P N+ +I L+
Sbjct: 153 PDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCDPDGITYPVPGNDDAGRAIALYCDLI 212
Query: 183 ARMVL 187
AR +
Sbjct: 213 ARAAI 217
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 30.9 bits (70), Expect = 0.85
Identities = 11/59 (18%), Positives = 11/59 (18%)
Query: 256 VQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPTG 314
IP E A VP P A V P P
Sbjct: 393 AAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPK 451
Score = 28.6 bits (64), Expect = 4.6
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 258 KPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPT 313
+P P P+AA AA +P + V P A P + P
Sbjct: 380 RPTPAPSTRPKAAAAANIP----PKEPVRETATPPPVPPRPVAPPVPHTPESAPKL 431
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 30.9 bits (70), Expect = 0.95
Identities = 19/83 (22%), Positives = 20/83 (24%), Gaps = 13/83 (15%)
Query: 236 LTSGDQWPSQIADGGWAGGEVQKPIPGVPYFPEAAPAATVPLG--GDGWDAVPAPPMAAV 293
L G P A P P AAP PAP A
Sbjct: 377 LERGAPAPPS------AAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAA 430
Query: 294 TAPPMAAVTAPDVSAAPPPTGWD 316
APP A A + D
Sbjct: 431 AAPP-----ARSADPAAAASAGD 448
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 31.1 bits (70), Expect = 0.97
Identities = 14/64 (21%), Positives = 16/64 (25%)
Query: 249 GGWAGGEVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSA 308
G A + +P P P P G P APP A P
Sbjct: 2724 GPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRL 2783
Query: 309 APPP 312
P
Sbjct: 2784 TRPA 2787
Score = 29.9 bits (67), Expect = 2.1
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 269 AAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPTGW 315
AAPA P+ G+G D P A PP AP+ +AAPP W
Sbjct: 253 AAPAPP-PVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVW 298
Score = 28.8 bits (64), Expect = 5.9
Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 261 PGVPYFPEAAPAATV------PLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPT 313
P P PE AP A V P A PA P A P + A A A P
Sbjct: 2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP-PAVPAGPATPGGPARPAR 2759
>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 30.9 bits (70), Expect = 1.0
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 267 PEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPT 313
A+ A P PAP AA+ AP AA + +A P P
Sbjct: 51 VAASAQAYAP-------PAPAPLPAALVAPAPAAASIAAPAAVPAPG 90
>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ
family. This family consists of a set proteins various
designated DegP, heat shock protein HtrA, and protease
DO. The ortholog in Pseudomonas aeruginosa is designated
MucD and is found in an operon that controls mucoid
phenotype. This family also includes the DegQ (HhoA)
paralog in E. coli which can rescue a DegP mutant, but
not the smaller DegS paralog, which cannot. Members of
this family are located in the periplasm and have
separable functions as both protease and chaperone.
Members have a trypsin domain and two copies of a PDZ
domain. This protein protects bacteria from thermal and
other stresses and may be important for the survival of
bacterial pathogens.// The chaperone function is
dominant at low temperatures, whereas the proteolytic
activity is turned on at elevated temperatures [Protein
fate, Protein folding and stabilization, Protein fate,
Degradation of proteins, peptides, and glycopeptides].
Length = 428
Score = 30.6 bits (70), Expect = 1.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 126 LILTDPRTDHQPIKEAALGNIPTIAFCDTD 155
L+ DPRTD +K A N+P I D+D
Sbjct: 98 LVGKDPRTDIAVLKIDAKKNLPVIKLGDSD 127
>gnl|CDD|221459 pfam12200, DUF3597, Domain of unknown function (DUF3597). This
family of proteins is found in bacteria, eukaryotes and
viruses. Proteins in this family are typically between
126 and 281 amino acids in length. The function of this
domain is unknown. The structure of this domain has been
found to contain five helices with a long flexible loop
between helices one and two.
Length = 124
Score = 29.2 bits (66), Expect = 1.1
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 266 FPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSA 308
F EAA AA P PA AA A A + DV+A
Sbjct: 10 FGEAAAAA--PAPAAAPATAPAAAAAAAPAATPPAAASVDVAA 50
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 30.8 bits (69), Expect = 1.1
Identities = 13/56 (23%), Positives = 20/56 (35%)
Query: 257 QKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 312
Q P P+ PA P P ++ + PP +A+ + A P P
Sbjct: 449 QSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGP 504
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein
(DUF2360). This is the conserved 140 amino acid region
of a family of proteins conserved from nematodes to
humans. One C. elegans member is annotated as a
Daf-16-dependent longevity protein 1 but this could not
be confirmed. The function is unknown.
Length = 147
Score = 29.3 bits (66), Expect = 1.4
Identities = 9/42 (21%), Positives = 12/42 (28%)
Query: 271 PAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 312
P +G P P A +PP A + P
Sbjct: 59 PPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPE 100
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 29.0 bits (65), Expect = 1.5
Identities = 15/57 (26%), Positives = 19/57 (33%)
Query: 256 VQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 312
+ P P P P A + + + PA P A A P A P PP
Sbjct: 82 LTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPP 138
>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 155
Score = 29.0 bits (66), Expect = 1.7
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 284 AVPAPPMAAVTAPPMAAVTAPDVSAAPPPT 313
A AP A P+AA A +AA P
Sbjct: 38 APVAPVAQQAAAAPVAAAPAAAAAAAAAPA 67
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 29.9 bits (66), Expect = 1.7
Identities = 26/103 (25%), Positives = 34/103 (33%)
Query: 209 REPEETKQAEEEETAAIDYATAEYNTNLTSGDQWPSQIADGGWAGGEVQKPIPGVPYFPE 268
++ E ++ + AA A SG + A A + P
Sbjct: 183 KDRERARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAA 242
Query: 269 AAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPP 311
A AA P A A P A APP A P +AAPP
Sbjct: 243 PAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPP 285
Score = 28.4 bits (62), Expect = 6.1
Identities = 17/42 (40%), Positives = 18/42 (42%)
Query: 270 APAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPP 311
A AA P A A P A APP A AP +AA P
Sbjct: 265 AKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAP 306
>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region. The
defective chorion-1 gene (dec-1) in Drosophila encodes
follicle cell proteins necessary for proper eggshell
assembly. Multiple products of the dec-1 gene are formed
by alternative RNA splicing and proteolytic processing.
Cleavage products include S80 (80 kDa) which is
incorporated into the eggshell, and further proteolysis
of S80 gives S60 (60 kDa).
Length = 407
Score = 29.4 bits (65), Expect = 2.5
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 265 YFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 312
+ + ++P VPAP A APP A A D AAP P
Sbjct: 89 FLAQLPAMPSMPGLLGAAAPVPAPAPAPAAAPPAAPAPAADTPAAPIP 136
>gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein;
Provisional.
Length = 186
Score = 28.8 bits (65), Expect = 2.9
Identities = 16/62 (25%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 227 YATAEYNTNLTSGDQWPSQIADGGWAGGEVQKPIPGVP-YFPEAAPAATVPLGGDGWDAV 285
YATA+ G GG GG G P A D W +
Sbjct: 112 YATAKVTRASRGGGGGGGGGGFGGGGGGSGGGGGGGGGGGAPGGGGAQASAPADDPWSSA 171
Query: 286 PA 287
PA
Sbjct: 172 PA 173
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 29.4 bits (66), Expect = 3.1
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 243 PSQIADGGWAGGEVQKPIPGVPYFPEAAPAATVPLGGD---GWDAVPAPPMAAVTAPPMA 299
S +A+G A G V K + PEAA AA +P + + P P A
Sbjct: 36 RSLVAEG--AAGPVAKAAEQMA-APEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGEAP 92
Query: 300 AVTAPDVSAAPP 311
A P AP
Sbjct: 93 AAEQPSAVPAPS 104
>gnl|CDD|217552 pfam03429, MSP1b, Major surface protein 1B. The major surface
protein (MSP1) of the cattle pathogen Anaplasma is a
heterodimer comprised of MSP1a and MSP1b. This family is
the MSP1b chain. There MSP1 proteins are putative
adhesins for bovine erythrocytes.
Length = 726
Score = 29.3 bits (65), Expect = 3.4
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 211 PEETKQAEEEETAAIDYATAEYNTNLTSGDQWPSQIADGGWAGGEVQ 257
PEE +QA E A++ A+A+ + S +Q +QIA GG + Q
Sbjct: 676 PEELEQAAEGLATAVNEASAD--GKIQSLNQQETQIAQGGQHAAQQQ 720
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 28.9 bits (64), Expect = 3.7
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 28/85 (32%)
Query: 247 ADGGWAGGEVQKPIPG------------------VP--YFPEAAPAATVPLGGDGWDAV- 285
A+G +GG P PG P P AAP+ VP WD
Sbjct: 386 AEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVP-----WDDAP 440
Query: 286 PAPPMAAVTAPPMAAVTAPDVSAAP 310
PAPP + + P + P+ S P
Sbjct: 441 PAPPRSGIPPRPAPRM--PEASPVP 463
>gnl|CDD|237062 PRK12328, nusA, transcription elongation factor NusA; Provisional.
Length = 374
Score = 28.8 bits (65), Expect = 3.8
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 40 RYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENP----GDIIVQ-SARPYGQRAVLKF 94
+ V +N+GI I L +T K A ++ +E P G++I+ SAR G+RA K
Sbjct: 188 KRVKIDKNNGIL-IELSRTSPKFLEA---LLELEVPEIKDGEVIIIHSARIPGERA--KV 241
Query: 95 AKYTH 99
A +++
Sbjct: 242 ALFSN 246
>gnl|CDD|234994 PRK01973, PRK01973, septum formation inhibitor; Reviewed.
Length = 271
Score = 28.5 bits (64), Expect = 3.9
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 267 PEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPT 313
AA A P +A A P AA P A AP+ AA T
Sbjct: 118 AAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPPPA-PAPEAVAAQSQT 163
>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional.
Length = 280
Score = 28.7 bits (63), Expect = 4.2
Identities = 21/52 (40%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 264 PYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAP--DVSAAPPPT 313
P P APAA P A PP A T PP A AP A PP T
Sbjct: 93 PACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPST 144
>gnl|CDD|173500 PTZ00264, PTZ00264, circumsporozoite-related antigen; Provisional.
Length = 148
Score = 28.0 bits (62), Expect = 4.4
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 278 GGDGWDAVPAPPMAAVTAPPMAA--VTAPDVSAAPP 311
GG G DA P PP A VTA DV+ P
Sbjct: 112 GGKGGDAAPPEADPESNGPPNAGPQVTAQDVTPEQP 147
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 28.3 bits (63), Expect = 4.8
Identities = 17/53 (32%), Positives = 18/53 (33%)
Query: 259 PIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPP 311
P P P AAPA P A PAP A P P+ PP
Sbjct: 43 PPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPP 95
Score = 27.6 bits (61), Expect = 9.7
Identities = 16/56 (28%), Positives = 17/56 (30%)
Query: 259 PIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPTG 314
P PAA D +A P PP A APP V P G
Sbjct: 54 APAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPAPEPG 109
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 28.6 bits (64), Expect = 5.0
Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 255 EVQKPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAA 309
+ P+ + +AA A P G P A A A A D A
Sbjct: 132 DALPPLRAIAVVDDAADATPAPAPGARVQLFALPDPAPPAA---AGERAADPDAG 183
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
synthetase/uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 656
Score = 28.5 bits (64), Expect = 5.9
Identities = 12/47 (25%), Positives = 15/47 (31%)
Query: 267 PEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPT 313
A PA P D + + + A AA P A PP
Sbjct: 268 AAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPE 314
>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional.
Length = 694
Score = 28.3 bits (63), Expect = 6.2
Identities = 13/47 (27%), Positives = 16/47 (34%)
Query: 268 EAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPTG 314
A L D AP ++ P+AA T D S TG
Sbjct: 329 PTAVCTDAGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTG 375
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional.
Length = 991
Score = 28.3 bits (63), Expect = 6.4
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 265 YFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSA--APPPTGWD 316
+ P AT P G DA APP A P AV P + A PP G D
Sbjct: 895 FGPGTGRVATAP----GGDAASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGPD 944
>gnl|CDD|221598 pfam12484, PE_PPE_C, Polymorphic PE/PPE proteins C terminal. This
domain family is found in bacteria, and is approximately
90 amino acids in length. The family is found in
association with pfam00823. There is a conserved SVP
sequence motif. There is a single completely conserved
residue W that may be functionally important. The
proteins in this family are PE/PPE proteins implicated
in immunostimulation and virulence.
Length = 81
Score = 26.1 bits (58), Expect = 6.7
Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 269 AAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPP 312
A AA L G G A AV P M A +A P
Sbjct: 26 AVSAAAAALPGAGVAAAAEAAAGAVL-PGMPGAAAAGRGSAGFP 68
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 27.1 bits (60), Expect = 7.0
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 276 PLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPTGWD 316
GGDG V + A APP P+ AP G D
Sbjct: 1 STGGDGTGGVSSGSSAP--APPAGPGPGPNAPPAPAAPGVD 39
>gnl|CDD|226463 COG3954, PrkB, Phosphoribulokinase [Energy production and
conversion].
Length = 289
Score = 27.9 bits (62), Expect = 7.1
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 74 NPGDIIVQSARPYGQRAVLKFAKYTH--AHAIAGRHTPGTFT 113
N ++ Q+ YGQ + KY H A+ PGTFT
Sbjct: 74 NDFGLLEQTFIEYGQSGKGRSRKYLHTYDEAVPWNQVPGTFT 115
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 27.9 bits (63), Expect = 7.3
Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Query: 262 GVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPTG 314
V AA AA A PA AA AP AA AP +A
Sbjct: 193 EVAAAAPAAAAAPAA-------AAPAAAAAAAPAPAPAAAAAPAAAAPAAAAA 238
>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI. This minor capsid
protein may act as a link between the external capsid
and the internal DNA-protein core. The C-terminal 11
residues may function as a protease cofactor leading to
enzyme activation.
Length = 238
Score = 27.5 bits (61), Expect = 9.1
Identities = 14/60 (23%), Positives = 17/60 (28%), Gaps = 3/60 (5%)
Query: 258 KPIPGVPYFPEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAA-VTAPDVSAAPPPTGWD 316
+ + + P V A P PP T P A V P S A D
Sbjct: 120 ETVADPIQALQPRPRPDVE--EVLVPAAPEPPSYEETIKPGPAPVEEPVDSMAIAVPAID 177
>gnl|CDD|237767 PRK14612, PRK14612, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 276
Score = 27.4 bits (61), Expect = 9.7
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 263 VPYF--PEAAPAATVPLGGDGWDAVPAPPMAAVTAPPMAAVTAPDVSAAPPPTGW 315
VP+F AA A V G+ + PP+ V P AV+A D P +
Sbjct: 133 VPFFLLGGAAEARGV---GERLTPLELPPVPLVLVNPGVAVSARDAYRWLEPEDF 184
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.417
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,608,671
Number of extensions: 1617981
Number of successful extensions: 2579
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2219
Number of HSP's successfully gapped: 187
Length of query: 316
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 219
Effective length of database: 6,635,264
Effective search space: 1453122816
Effective search space used: 1453122816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)