Query 021183
Match_columns 316
No_of_seqs 171 out of 438
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 08:15:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00168 pbsA heme oxygenase; 100.0 3.1E-45 6.6E-50 339.6 18.9 171 142-314 32-208 (238)
2 COG5398 Heme oxygenase [Inorga 100.0 6.9E-39 1.5E-43 291.0 15.8 172 141-314 29-205 (238)
3 KOG4480 Heme oxygenase [Inorga 100.0 3.7E-36 8E-41 282.5 13.4 223 75-315 56-281 (283)
4 PF01126 Heme_oxygenase: Heme 100.0 1.6E-34 3.4E-39 257.1 16.0 170 141-312 29-205 (205)
5 cd00232 HemeO Heme oxygenase c 100.0 4E-33 8.7E-38 247.7 19.0 197 88-313 1-202 (203)
6 KOG4480 Heme oxygenase [Inorga 99.6 9.8E-15 2.1E-19 138.2 12.0 163 143-314 43-213 (283)
7 COG3230 HemO Heme oxygenase [I 99.1 6.7E-10 1.4E-14 99.9 12.6 155 139-312 32-193 (196)
8 PF03070 TENA_THI-4: TENA/THI- 86.0 1.1 2.5E-05 39.5 4.4 159 143-305 24-199 (210)
9 PRK14713 multifunctional hydro 85.4 10 0.00022 39.3 11.6 149 140-298 345-510 (530)
10 PRK09517 multifunctional thiam 69.0 68 0.0015 35.0 12.4 146 140-297 571-733 (755)
11 PTZ00347 phosphomethylpyrimidi 64.9 1.2E+02 0.0026 31.2 12.6 149 140-306 38-205 (504)
12 COG5398 Heme oxygenase [Inorga 63.9 15 0.00033 34.8 5.4 107 147-254 5-127 (238)
13 cd07356 HN_L-whirlin_R1_like F 37.6 57 0.0012 26.2 4.0 40 273-316 5-44 (78)
14 PF09026 CENP-B_dimeris: Centr 31.4 44 0.00096 28.0 2.6 20 143-162 40-59 (101)
15 PF12981 DUF3865: Domain of Un 29.3 3.9E+02 0.0084 25.6 8.7 122 187-311 94-224 (231)
16 COG0819 TenA Putative transcri 29.0 4.9E+02 0.011 24.4 11.0 146 140-296 28-197 (218)
17 PRK05157 pyrroloquinoline quin 28.0 4.5E+02 0.0098 25.2 9.1 101 206-313 119-227 (246)
18 PF02093 Gag_p30: Gag P30 core 24.4 93 0.002 29.3 3.7 29 272-303 41-69 (211)
19 TIGR02111 PQQ_syn_pqqC coenzym 24.2 5.4E+02 0.012 24.7 8.8 99 207-312 113-219 (239)
20 PHA02659 endothelin precursor; 22.7 69 0.0015 25.0 2.1 11 44-54 16-26 (70)
21 TIGR02792 PCA_ligA protocatech 22.4 97 0.0021 26.7 3.1 28 268-297 33-60 (117)
22 cd07355 HN_L-delphilin-R2_like 21.4 1.9E+02 0.004 23.4 4.4 38 274-315 6-43 (80)
23 cd07924 PCA_45_Doxase_A The A 20.8 1.1E+02 0.0024 26.5 3.2 28 268-297 36-63 (121)
No 1
>CHL00168 pbsA heme oxygenase; Provisional
Probab=100.00 E-value=3.1e-45 Score=339.60 Aligned_cols=171 Identities=20% Similarity=0.373 Sum_probs=161.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CccccccccccccchHHHHHHHHHhHhCCCC-CcCCCccHHHHHHHHHH
Q 021183 142 WKPSMDAFVKYLVDSQLVFNTIERIVDDSN-DVAYAYFRKTGLERSEGISRDLEWFSEQGII-IPEPSTPGVSYAKYLEE 219 (316)
Q Consensus 142 w~~s~e~Y~~lL~~ly~VY~aLE~al~~~~-d~~~a~f~~~eL~Rs~aLe~DL~~l~G~~~~-~~~pspa~~~Yv~~L~e 219 (316)
-..++++|+++|.++|+||.+||++++++. ++.++.|++|+|+|+++|++||++|+|.+|. .+.|+|+++.|++||++
T Consensus 32 g~~~~~~Y~~ll~~ly~vY~aLE~~l~~~~~~~~~~~~~~peL~R~~aLe~DL~~l~G~~w~~~~~p~pa~~~Yv~rI~~ 111 (238)
T CHL00168 32 GVIDKKSYRKLVANLYFVYSAIEEEIEKNKEHPLIKPIYFQELNRKESLEKDLNYYYGDDWKSIIEPSPATKIYVDRIHK 111 (238)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccchhhhhhHHHHHHHHHHcCCCccccCCCChHHHHHHHHHHH
Confidence 378999999999999999999999999997 5656888899999999999999999999997 67889999999999999
Q ss_pred HhccCccchhhHHHHHHhhhcchhHHHHHHHHHhc-c-CCCcccceeecC--ChHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 021183 220 LAEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEKI-L-DGRKLEVYRWEG--DPEEMLKDVREKLNMLGEHWTRDEKNKS 295 (316)
Q Consensus 220 la~~~P~lLLAH~YvrYLGdLSGGQiI~r~v~r~l-l-~g~GL~FY~F~g--d~~~lK~~yR~~Lnal~e~Ld~eEk~~i 295 (316)
+++++|++|+||+|||||||+||||||++++++++ + +++|++||.|+| +.+.||+.||+.||+++ ||++++++|
T Consensus 112 ~~~~~P~~LvAH~YvrYLGdlsGGQiI~k~l~r~~gl~~~~G~~Fy~F~~i~~~~~fk~~yr~~Ld~l~--l~e~e~~~i 189 (238)
T CHL00168 112 ISAKKPELLIAHAYTRYLGDLSGGQILKKIAQRAMNLSDSGGLAFYDFDNIEDDQEFKQIYKAALDNLP--LSDDQIQNI 189 (238)
T ss_pred HhhcChHHHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCcCccccCCCCcCcHHHHHHHHHHHHhcCC--CCHHHHHHH
Confidence 99999999999999999999999999999999998 5 469999999998 89999999999999997 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021183 296 LKEAAKSFKFLGQIVRLII 314 (316)
Q Consensus 296 IeEA~~AF~lN~~I~r~I~ 314 (316)
|+||+.||.+|++||.++-
T Consensus 190 I~EA~~AF~lN~~vf~eL~ 208 (238)
T CHL00168 190 IAEANIAFNLNMKMFQELN 208 (238)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999874
No 2
>COG5398 Heme oxygenase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-39 Score=291.00 Aligned_cols=172 Identities=20% Similarity=0.365 Sum_probs=160.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccccccccccccchHHHHHHHHHhHhCCCC-CcCCCccHHHHHHHHH
Q 021183 141 TWKPSMDAFVKYLVDSQLVFNTIERIVDDSND-VAYAYFRKTGLERSEGISRDLEWFSEQGII-IPEPSTPGVSYAKYLE 218 (316)
Q Consensus 141 ~w~~s~e~Y~~lL~~ly~VY~aLE~al~~~~d-~~~a~f~~~eL~Rs~aLe~DL~~l~G~~~~-~~~pspa~~~Yv~~L~ 218 (316)
+-..+++.|++++.++|+||.+||++++.+++ +.+....+|+|+|.+.|++||.+++|.+|. .+.|+|+++.||+||+
T Consensus 29 kg~V~~e~f~kl~~n~yf~ysaleaa~~~~~d~~~l~~i~fp~lnr~~tle~dl~~yyg~nwre~I~~sp~t~~yv~rv~ 108 (238)
T COG5398 29 KGVVERESFRKLLANLYFVYSALEAATQIHKDNPILSSIYFPELNRKATLEKDLLYYYGNNWRENIQPSPATIAYVDRVR 108 (238)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhccchhhhhHHHhhcCHHHHhcccHHHhcCcChhHHHHHHHHH
Confidence 33678999999999999999999999999984 666778889999999999999999999997 7789999999999999
Q ss_pred HHhccCccchhhHHHHHHhhhcchhHHHHHHHHHhc-cCCCcccceeec--CChHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 021183 219 ELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEKI-LDGRKLEVYRWE--GDPEEMLKDVREKLNMLGEHWTRDEKNKS 295 (316)
Q Consensus 219 ela~~~P~lLLAH~YvrYLGdLSGGQiI~r~v~r~l-l~g~GL~FY~F~--gd~~~lK~~yR~~Lnal~e~Ld~eEk~~i 295 (316)
.++...|.+||||+|+||||||||||||.+.+.+.+ +.+.|++||.|+ ||.+.||..||+.||.++ +|++++++|
T Consensus 109 ~iaa~ap~lLIah~ytRyLGdlsggq~l~ki~q~~~~L~~~gtaFy~F~dl~dek~fK~~YR~~ld~l~--ldeAt~~rI 186 (238)
T COG5398 109 YIAATAPELLIAHNYTRYLGDLSGGQILKKIAQSALELSEGGTAFYEFEDLGDEKAFKDEYRQNLDSLE--LDEATKLRI 186 (238)
T ss_pred HHHhcCcchhHHHHHHHHHhcCCCcHHHHHHHHHHhccccccceeeeHhhcchhhhHHHHHHHHhhccc--ccHHHHHHH
Confidence 999999999999999999999999999999999888 666699999998 489999999999999998 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021183 296 LKEAAKSFKFLGQIVRLII 314 (316)
Q Consensus 296 IeEA~~AF~lN~~I~r~I~ 314 (316)
|+||+.||++|++||.+|-
T Consensus 187 vdeAn~aF~~N~~~~~eLE 205 (238)
T COG5398 187 VDEANDAFDFNMQMFQELE 205 (238)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999873
No 3
>KOG4480 consensus Heme oxygenase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-36 Score=282.49 Aligned_cols=223 Identities=42% Similarity=0.696 Sum_probs=207.2
Q ss_pred hccccccCCCCccchHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCcchhhhhhhccCCCCCCCCCCHHH---HHH
Q 021183 75 RVRYRREYPGESKGITEEMRFVAMRLRNLKGKKYPSSPHNSNSDCEDSSNDDVEHEQEVKQDNDGETWKPSMDA---FVK 151 (316)
Q Consensus 75 ~~~~~~~~~ge~~g~~eemr~vam~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~w~~s~e~---Y~~ 151 (316)
.-++.++||||..||+||||||+|+||++++..+ + +....+.+.-.+++|+++.++ |.+
T Consensus 56 ~~~~~~~y~~e~~~~~E~~~F~~~~f~~~~el~e----------~--------~a~~~d~~~~~~~~W~e~ie~~pa~~k 117 (283)
T KOG4480|consen 56 LYFWYKAYPGETEGFKEEMRFVAMRFPSTEELHE----------K--------EALEQDPEEFFGENWEETIEGEPAYQK 117 (283)
T ss_pred HHHHHHhCcchhhhhhHHHhhHhhhcCCHHHHhH----------H--------hhhhcChhhhccccccccccCCHHHHH
Confidence 6778899999999999999999999999888542 1 111123445589999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHhHhCCCCCcCCCccHHHHHHHHHHHhccCccchhhH
Q 021183 152 YLVDSQLVFNTIERIVDDSNDVAYAYFRKTGLERSEGISRDLEWFSEQGIIIPEPSTPGVSYAKYLEELAEKSAPLFLSH 231 (316)
Q Consensus 152 lL~~ly~VY~aLE~al~~~~d~~~a~f~~~eL~Rs~aLe~DL~~l~G~~~~~~~pspa~~~Yv~~L~ela~~~P~lLLAH 231 (316)
+|++++.||+++|..|.++.-+.|++|..+||+|.+.++.||.|+..+...+|.+.+++++|..++...++.+|.++|||
T Consensus 118 yl~~~~~v~~t~e~ll~~s~~~~Y~g~~s~GLek~~q~~~dl~w~~~q~~~~pe~~~a~k~~~~y~k~~~E~~pq~~I~~ 197 (283)
T KOG4480|consen 118 YLVDSKLVADTEEELLVASAYTRYAGLLSGGLEKAEQKELDLPWTGEQFYTFPELANAGKTYQKYLKNNLELDPQRFICE 197 (283)
T ss_pred HHHHHHHHHHhhhHHHHHhhHHHHHHhhccHHHHHHHHHhhcchhhhhccccCCCCcHHHHHHHHHHHhhccChhHHHHH
Confidence 99999999999999999999888999999999999999999999987888899999999999999999999999999999
Q ss_pred HHHHHhhhcchhHHHHHHHHHhccCCCcccceeecCChHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 021183 232 FYNIYFSHVAGGQVIERQVSEKILDGRKLEVYRWEGDPEEMLKDVREKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVR 311 (316)
Q Consensus 232 ~YvrYLGdLSGGQiI~r~v~r~ll~g~GL~FY~F~gd~~~lK~~yR~~Lnal~e~Ld~eEk~~iIeEA~~AF~lN~~I~r 311 (316)
+|+.|+.+..|||+|++++++.++++..++||.|+|+...+.+++++.||-.++.|+.+++++|+.+...+|.+.+.||+
T Consensus 198 ~~~iyf~~~~~f~~~~~~v~~~ile~~~~ef~~~~~~~~~~~~~v~ekln~~~~~~~r~~~~~~L~~~~l~fif~~~iv~ 277 (283)
T KOG4480|consen 198 FYNIYFAHIAGFQMLGRKVAEEILENKELEFDGWDGRFSELLQNVREKLNKEGEAWTREEKNACLLETSLAFIFVGEIVR 277 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhhHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh
Q 021183 312 LIIL 315 (316)
Q Consensus 312 ~I~~ 315 (316)
.|++
T Consensus 278 ~~L~ 281 (283)
T KOG4480|consen 278 LILS 281 (283)
T ss_pred HHHh
Confidence 9987
No 4
>PF01126 Heme_oxygenase: Heme oxygenase; InterPro: IPR016053 Haem oxygenase (1.14.99.3 from EC) (HO) [] is the microsomal enzyme that, in animals, carries out the oxidation of haem, it cleaves the haem ring at the alpha-methene bridge to form biliverdin and carbon monoxide []. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. In mammals there are three isozymes of haem oxygenase: HO-1 to HO-3. The first two isozymes differ in their tissue expression and their inducibility: HO-1 is highly inducible by its substrate haem and by various non-haem substances, while HO-2 is non-inducible. It has been suggested [] that HO-2 could be implicated in the production of carbon monoxide in the brain where it is said to act as a neurotransmitter. In the genome of the chloroplast of red algae as well as in cyanobacteria, there is a haem oxygenase (gene pbsA) that is the key enzyme in the synthesis of the chromophoric part of the photosynthetic antennae []. A haem oxygenase is also present in the bacteria Corynebacterium diphtheriae (gene hmuO), where it is involved in the acquisition of iron from the host haem []. There is, in the central section of these enzymes, a well-conserved region centred on a histidine residue.; GO: 0004392 heme oxygenase (decyclizing) activity, 0006788 heme oxidation, 0055114 oxidation-reduction process; PDB: 1J77_A 1P3U_A 1P3V_A 1P3T_A 1WNW_B 1WNX_B 1IW1_B 1WNV_C 1V8X_A 1WZG_B ....
Probab=100.00 E-value=1.6e-34 Score=257.06 Aligned_cols=170 Identities=26% Similarity=0.382 Sum_probs=152.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CccccccccccccchHHHHHHHHHhHhCCCC-CcCCCccHHHHHHHHH
Q 021183 141 TWKPSMDAFVKYLVDSQLVFNTIERIVDDSN-DVAYAYFRKTGLERSEGISRDLEWFSEQGII-IPEPSTPGVSYAKYLE 218 (316)
Q Consensus 141 ~w~~s~e~Y~~lL~~ly~VY~aLE~al~~~~-d~~~a~f~~~eL~Rs~aLe~DL~~l~G~~~~-~~~pspa~~~Yv~~L~ 218 (316)
.+..|++.|+++|.++|+||.+||++++++. ++.+..+..++|.|+++|++||++|.|.+|. .+.|++++..|+.+|+
T Consensus 29 ~~~~~~~~Y~~~L~~~~~~y~~lE~~l~~~~~~~~~~~~~~~~l~R~~~L~~DL~~l~~~~~~~~~~~~~a~~~~~~~i~ 108 (205)
T PF01126_consen 29 AGDLSRDDYARFLQAFYHVYRALEAALDRNRDDPALAPLYFPELRRSAALEADLAALGGPDWRDDIEPSPATQAYVPHIR 108 (205)
T ss_dssp TTSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTTGGGS-GHHHTHHHHHHHHHHHHCTTHHHHCHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccCcchhHHHHHHHHHHHhhCCCcccccCCChhHHHHHHHHH
Confidence 4679999999999999999999999999985 5666778889999999999999999997786 5667888999999999
Q ss_pred HHhccCccchhhHHHHHHhhhcchhHHHHHHHHHhc-cCC--CcccceeecC--ChHHHHHHHHHHHhhcCCCCCHHHHH
Q 021183 219 ELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEKI-LDG--RKLEVYRWEG--DPEEMLKDVREKLNMLGEHWTRDEKN 293 (316)
Q Consensus 219 ela~~~P~lLLAH~YvrYLGdLSGGQiI~r~v~r~l-l~g--~GL~FY~F~g--d~~~lK~~yR~~Lnal~e~Ld~eEk~ 293 (316)
.++..+|..+|||+||+|+|+|+|||+|++.+.+.+ ++. .|++||.|++ +...+|+.|++.||+++ +|+++++
T Consensus 109 ~~~~~~p~~~lg~~YV~egs~LgGg~ii~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~w~~f~~~l~~~~--l~~~~~~ 186 (205)
T PF01126_consen 109 ELAESSPALLLGHAYVLEGSTLGGGQIIRRLLARHLGLPEGFGGLSFFSFGGIEDTGALWRAFRAALDAAA--LTEEERD 186 (205)
T ss_dssp HHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT-BTTBCSGGGGH-TTSSSHHHHHHHHHHHHHHS-----HHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCCcccccccCCCCcccHHHHHHHHHHHHhcCC--CCHHHHH
Confidence 999999999999999999999999999999999988 543 5999999998 89999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021183 294 KSLKEAAKSFKFLGQIVRL 312 (316)
Q Consensus 294 ~iIeEA~~AF~lN~~I~r~ 312 (316)
+||+||+.+|++|++||++
T Consensus 187 ~ii~~A~~~F~~~~~~~~~ 205 (205)
T PF01126_consen 187 EIIEEAKAAFRLNIAWFRE 205 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999986
No 5
>cd00232 HemeO Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes bacterial HO, as well as the mammalian isoforms HO-1, and HO-2. Heme oxygenases play key roles in heme homeostasis, oxidative stress response, photosynthetic pigment formation in cyanobacteria, cellular signaling in mammals, and iron acquisition from host heme by bacterial pathogens.
Probab=100.00 E-value=4e-33 Score=247.71 Aligned_cols=197 Identities=26% Similarity=0.450 Sum_probs=172.0
Q ss_pred chHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCcchhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 021183 88 GITEEMRFVAMRLRNLKGKKYPSSPHNSNSDCEDSSNDDVEHEQEVKQDNDGETWKPSMDAFVKYLVDSQLVFNTIERIV 167 (316)
Q Consensus 88 g~~eemr~vam~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~w~~s~e~Y~~lL~~ly~VY~aLE~al 167 (316)
+|.+.||+.-+.+|.+-.+.. .....-.+.+|.+.|+++|.++|.+|.+||..+
T Consensus 1 ~~~~~Lr~~T~~~H~~~e~~~--------------------------~~~~l~~~~~s~~~Y~~~L~~~~~~~~~lE~~l 54 (203)
T cd00232 1 SLSEELRAATRQLHEEAENLV--------------------------FMKDLLKGFLSREGYARFLANLYLVYRALEALL 54 (203)
T ss_pred CHHHHHHHHHHHHHHHHHchH--------------------------HHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999998765320 001134678999999999999999999999999
Q ss_pred HhcCC-ccccccccccccchHHHHHHHHHhHhCCCCCc-CCCccHHHHHHHHHHHhccCccchhhHHHHHHhhhcchhHH
Q 021183 168 DDSND-VAYAYFRKTGLERSEGISRDLEWFSEQGIIIP-EPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQV 245 (316)
Q Consensus 168 ~~~~d-~~~a~f~~~eL~Rs~aLe~DL~~l~G~~~~~~-~pspa~~~Yv~~L~ela~~~P~lLLAH~YvrYLGdLSGGQi 245 (316)
+...+ +....+..+++.|+++|++||++|.|..|... .|.+++ .|+++|...+..+|..+|||+||+|+|++||||+
T Consensus 55 ~~~~~~~~~~~~~~~~~~r~~~L~~DL~~lg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lg~~YV~egs~l~GG~~ 133 (203)
T cd00232 55 EASKDNPYLAPLYLPELERAAALEKDLAYLGGSDWRVREPPLPAA-AYAARLREIAEENPALLLGHAYVRYGADLSGGQV 133 (203)
T ss_pred HHccCCcccccccCccccchHHHHHHHHHHhCCCccccCCCChHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccHH
Confidence 99874 33345778999999999999999988877744 344445 9999999999999999999999999999999999
Q ss_pred HHHHHHHhc-cCCCcccceeecC--ChHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021183 246 IERQVSEKI-LDGRKLEVYRWEG--DPEEMLKDVREKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVRLI 313 (316)
Q Consensus 246 I~r~v~r~l-l~g~GL~FY~F~g--d~~~lK~~yR~~Lnal~e~Ld~eEk~~iIeEA~~AF~lN~~I~r~I 313 (316)
|++++.+.+ +++.|++||.|+| +...+|+.|+..||++. +|++++++||++|+.+|++|.+||++|
T Consensus 134 i~~~l~~~~~~~~~~~~f~~~~g~~~~~~~w~~f~~~l~~~~--~~~~~~~~~i~~A~~~F~~~~~~~~~~ 202 (203)
T cd00232 134 LAKIAQRALLLEGKGLAFYAFHGIADRGLFKREFREALDALP--LDEEERQRVVAEARAAFRLNGQVFREL 202 (203)
T ss_pred HHHHHHHHhCCCCccCccccCCCcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998 6789999999998 69999999999999997 999999999999999999999999987
No 6
>KOG4480 consensus Heme oxygenase [Inorganic ion transport and metabolism]
Probab=99.59 E-value=9.8e-15 Score=138.18 Aligned_cols=163 Identities=12% Similarity=0.127 Sum_probs=135.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccc--cccc-cccccchHHHHHHHHHhHhCCCC-CcCCCccHHHHHHHH
Q 021183 143 KPSMDAFVKYLVDSQLVFNTIERIVDDSND-VAY--AYFR-KTGLERSEGISRDLEWFSEQGII-IPEPSTPGVSYAKYL 217 (316)
Q Consensus 143 ~~s~e~Y~~lL~~ly~VY~aLE~al~~~~d-~~~--a~f~-~~eL~Rs~aLe~DL~~l~G~~~~-~~~pspa~~~Yv~~L 217 (316)
+.+.+....-...+++.|.+++.......+ +.. ..|+ ..+++|.+++.+|+++++|.+|. .++-.|+.+.|+.|+
T Consensus 43 n~t~~l~~~~t~a~~~~~~~y~~e~~~~~E~~~F~~~~f~~~~el~e~~a~~~d~~~~~~~~W~e~ie~~pa~~kyl~~~ 122 (283)
T KOG4480|consen 43 NVTPELVQLSTAALYFWYKAYPGETEGFKEEMRFVAMRFPSTEELHEKEALEQDPEEFFGENWEETIEGEPAYQKYLVDS 122 (283)
T ss_pred CCchHHHHHHHHHHHHHHHhCcchhhhhhHHHhhHhhhcCCHHHHhHHhhhhcChhhhccccccccccCCHHHHHHHHHH
Confidence 566777778888999999999998877764 222 2344 35899999999999999999998 445567789999999
Q ss_pred HHHhccCccchhhHHHHHHhhhcchhHHHHHHHHHhc-cCCCcccceeecC--ChHHHHHHHHHHHhhcCCCCCHHHHHH
Q 021183 218 EELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEKI-LDGRKLEVYRWEG--DPEEMLKDVREKLNMLGEHWTRDEKNK 294 (316)
Q Consensus 218 ~ela~~~P~lLLAH~YvrYLGdLSGGQiI~r~v~r~l-l~g~GL~FY~F~g--d~~~lK~~yR~~Lnal~e~Ld~eEk~~ 294 (316)
+-++.+.|..|++|+|+||+|+++|| |.|.-++.+ +..-+.+||.|+. .....+..|+ .|.+. +++ ++
T Consensus 123 ~~v~~t~e~ll~~s~~~~Y~g~~s~G--Lek~~q~~~dl~w~~~q~~~~pe~~~a~k~~~~y~--k~~~E--~~p---q~ 193 (283)
T KOG4480|consen 123 KLVADTEEELLVASAYTRYAGLLSGG--LEKAEQKELDLPWTGEQFYTFPELANAGKTYQKYL--KNNLE--LDP---QR 193 (283)
T ss_pred HHHHHhhhHHHHHhhHHHHHHhhccH--HHHHHHHHhhcchhhhhccccCCCCcHHHHHHHHH--HHhhc--cCh---hH
Confidence 99999999999999999999999999 555555555 5556688999995 7899999999 67776 777 78
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021183 295 SLKEAAKSFKFLGQIVRLII 314 (316)
Q Consensus 295 iIeEA~~AF~lN~~I~r~I~ 314 (316)
+|.|..++|-.|+++++.|.
T Consensus 194 ~I~~~~~iyf~~~~~f~~~~ 213 (283)
T KOG4480|consen 194 FICEFYNIYFAHIAGFQMLG 213 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987654
No 7
>COG3230 HemO Heme oxygenase [Inorganic ion transport and metabolism]
Probab=99.14 E-value=6.7e-10 Score=99.94 Aligned_cols=155 Identities=14% Similarity=0.162 Sum_probs=124.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc-cccchHHHHHHHHHhHhCCCC---CcCCCccHHHHH
Q 021183 139 GETWKPSMDAFVKYLVDSQLVFNTIERIVDDSNDVAYAYFRKT-GLERSEGISRDLEWFSEQGII---IPEPSTPGVSYA 214 (316)
Q Consensus 139 ~~~w~~s~e~Y~~lL~~ly~VY~aLE~al~~~~d~~~a~f~~~-eL~Rs~aLe~DL~~l~G~~~~---~~~pspa~~~Yv 214 (316)
...=..|++.|++++...|.+...||.++++..-+. .++.. .+.|..+|++||..+ |.... .|...++
T Consensus 32 ~~~pf~sr~nyl~f~~~q~~f~~~Le~~~r~~~l~~--~lp~l~~r~r~~~l~~DLadl-G~~~~~~d~p~~~~~----- 103 (196)
T COG3230 32 SVQPFLSRRNYLKFLKRQYLFHKPLEHILRDAELPK--ALPELEYRARYDALEQDLADL-GEEPPKFDKPRCEPP----- 103 (196)
T ss_pred ccCccccHHHHHHHHHHHHHHhhhHHHHHccccchh--hcccHHHHHHHHHHHHHHHHh-CCCCCccccccccCC-----
Confidence 333378999999999999999999999998855332 23333 488999999999998 55421 2211222
Q ss_pred HHHHHHhccCccchhhHHHHHHhhhcchhHHHHHHHHHhc--cCCCcccceeecC-ChHHHHHHHHHHHhhcCCCCCHHH
Q 021183 215 KYLEELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEKI--LDGRKLEVYRWEG-DPEEMLKDVREKLNMLGEHWTRDE 291 (316)
Q Consensus 215 ~~L~ela~~~P~lLLAH~YvrYLGdLSGGQiI~r~v~r~l--l~g~GL~FY~F~g-d~~~lK~~yR~~Lnal~e~Ld~eE 291 (316)
+ +-+...++..||.. |.+.||++|-|++++ + .++.|.+.+.-+| ....-|+.|-+.||++. +++++
T Consensus 104 -----~--t~~aea~GwlYV~E-GstLGaAfL~K~aa~-L~l~~e~garhLag~~~grG~~WrsF~e~L~~~~--l~~E~ 172 (196)
T COG3230 104 -----L--TLAAEAFGWLYVAE-GSTLGAAFLFKHAAK-LGLNPEFGARHLAGYGDGRGKRWRSFVEHLDAIN--LTPEA 172 (196)
T ss_pred -----c--hhHHHhhhhhhhcc-ccchHHHHHHHHHHH-hcCCcccchHhhcCCCCCCCccHHHHHHHHHhcc--CCHHH
Confidence 1 12335789999997 999999999999998 4 4677999988776 58889999999999997 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021183 292 KNKSLKEAAKSFKFLGQIVRL 312 (316)
Q Consensus 292 k~~iIeEA~~AF~lN~~I~r~ 312 (316)
...+++.|+.+|.....+++.
T Consensus 173 e~~av~gA~~aF~~fr~~l~~ 193 (196)
T COG3230 173 EAEAVAGARAAFAAFRRVLQE 193 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998875
No 8
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....
Probab=85.98 E-value=1.1 Score=39.48 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccc-cc---ccccccchHHHHHHHHHhHhCCCC---CcCCCccHH
Q 021183 143 KPSMDAFVKYLVDSQLVFNTIERIVDDS----NDVAYA-YF---RKTGLERSEGISRDLEWFSEQGII---IPEPSTPGV 211 (316)
Q Consensus 143 ~~s~e~Y~~lL~~ly~VY~aLE~al~~~----~d~~~a-~f---~~~eL~Rs~aLe~DL~~l~G~~~~---~~~pspa~~ 211 (316)
.++.+.|..+|.|=|+.-...=+++... .++... .+ ........-.+-.++.--+|-+.. ...|+|++.
T Consensus 24 tL~~~~f~~Yl~QD~~yl~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~~~~~~~~~p~~~ 103 (210)
T PF03070_consen 24 TLPKEAFRYYLIQDYHYLKHFARALALLASKAPDPEEQRELLSRLIQEIEEELELHEDFAEELGISREDLENIEPSPATR 103 (210)
T ss_dssp ESEHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHSTC-HHHH
T ss_pred CCCHHHHHHHHHhhHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhhhhHHH
Confidence 7889999999999887776666655543 232111 00 001111111122222111232222 357888899
Q ss_pred HHHHHHHHHhccC-ccchhhHHHHHHhhhcchhHHHHHHHHHhccCCCcccceeec---C--ChHHHHHHHHHHHhhcCC
Q 021183 212 SYAKYLEELAEKS-APLFLSHFYNIYFSHVAGGQVIERQVSEKILDGRKLEVYRWE---G--DPEEMLKDVREKLNMLGE 285 (316)
Q Consensus 212 ~Yv~~L~ela~~~-P~lLLAH~YvrYLGdLSGGQiI~r~v~r~ll~g~GL~FY~F~---g--d~~~lK~~yR~~Lnal~e 285 (316)
.|++++..++... +...++-.+.-+.+=.-=| +.+...+-...+-.|+.|= + +-....+.+.+.+|.+..
T Consensus 104 ~y~~~l~~~a~~~~~~~~l~al~pc~~~Y~~~~----~~~~~~~~~~~~~~y~~wi~~y~~~~f~~~~~~~~~~~~~~~~ 179 (210)
T PF03070_consen 104 AYTDFLLSLAQTGSLAEGLAALLPCEWIYAEIG----KRLAEKLRAPEDNPYQEWIDMYASEEFEAFVEWLEELLDELAA 179 (210)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHH----HHHHHHCSTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH----HHHhccccCCCCccHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999998654 4445555444443333333 3333333112333455542 2 355667788888888875
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 021183 286 HWTRDEKNKSLKEAAKSFKF 305 (316)
Q Consensus 286 ~Ld~eEk~~iIeEA~~AF~l 305 (316)
..++++++++.+-...+-++
T Consensus 180 ~~~~~~~~~~~~~f~~~~~~ 199 (210)
T PF03070_consen 180 EASDEERERLEEIFRRSCEL 199 (210)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHH
Confidence 56666655554444444333
No 9
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=85.37 E-value=10 Score=39.30 Aligned_cols=149 Identities=13% Similarity=0.176 Sum_probs=82.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc----CCccc-cccc---cccccchHHHHHHHHHhHhCCCCCcCCCccHH
Q 021183 140 ETWKPSMDAFVKYLVDSQLVFNTIERIVDDS----NDVAY-AYFR---KTGLERSEGISRDLEWFSEQGIIIPEPSTPGV 211 (316)
Q Consensus 140 ~~w~~s~e~Y~~lL~~ly~VY~aLE~al~~~----~d~~~-a~f~---~~eL~Rs~aLe~DL~~l~G~~~~~~~pspa~~ 211 (316)
+.-.++.+.|..||.|=|+.....-+++... .+... ..|. ..-+..-..+-.++ +...+. ...++|++.
T Consensus 345 ~~GtL~~~~F~~Yl~QD~~yL~~~~r~~a~~~aka~~~e~~~~~~~~~~~~~~~E~~~h~~~--~~~~~~-~~~~~p~~~ 421 (530)
T PRK14713 345 ADGTLPEEAFEFYLAQDALYLNGYSRALARLAALAPDPAEQVFWAQSAQACLEVESELHRSW--LGDRDA-DTAPSPVTL 421 (530)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCc-cCCCChHHH
Confidence 5558999999999998777766665665443 22110 0111 00011111111111 111122 346778889
Q ss_pred HHHHHHHHHhccC-ccc---hhhHHHHHHhhhcchhHHHHHHHHHhccCCCcccceee---c-C-ChHHHHHHHHHHHhh
Q 021183 212 SYAKYLEELAEKS-APL---FLSHFYNIYFSHVAGGQVIERQVSEKILDGRKLEVYRW---E-G-DPEEMLKDVREKLNM 282 (316)
Q Consensus 212 ~Yv~~L~ela~~~-P~l---LLAH~YvrYLGdLSGGQiI~r~v~r~ll~g~GL~FY~F---~-g-d~~~lK~~yR~~Lna 282 (316)
.|++||..++.+. ... .|.-|+..| ..|++.+........+-.|..| + + +-.+.-+.+++.||.
T Consensus 422 aY~~~l~~~a~~~~~~~~l~AllPC~~~Y-------~~ig~~l~~~~~~~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~ 494 (530)
T PRK14713 422 AYTDFLLARAAGGSYAVGAAAVLPCFWLY-------AEVGAELHARAGNPDDHPYAEWLQTYADPEFAAATRRAIAFVDR 494 (530)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHH-------HHHHHHHHhhccCCCCChHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999987653 322 334466777 3445555432111123334344 2 2 356667788899999
Q ss_pred cCCCCCHHHHHHHHHH
Q 021183 283 LGEHWTRDEKNKSLKE 298 (316)
Q Consensus 283 l~e~Ld~eEk~~iIeE 298 (316)
+++..|+++++++.+-
T Consensus 495 ~~~~~s~~~~~~~~~~ 510 (530)
T PRK14713 495 AFRAASPAERAAMARA 510 (530)
T ss_pred HHhhCCHHHHHHHHHH
Confidence 9888899998665543
No 10
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=69.04 E-value=68 Score=35.00 Aligned_cols=146 Identities=12% Similarity=0.099 Sum_probs=82.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC----Ccc-ccccccccccchHHHHHHHHHhH--hCCCC-CcCCCccHH
Q 021183 140 ETWKPSMDAFVKYLVDSQLVFNTIERIVDDSN----DVA-YAYFRKTGLERSEGISRDLEWFS--EQGII-IPEPSTPGV 211 (316)
Q Consensus 140 ~~w~~s~e~Y~~lL~~ly~VY~aLE~al~~~~----d~~-~a~f~~~eL~Rs~aLe~DL~~l~--G~~~~-~~~pspa~~ 211 (316)
+.-.++.+.|..||.|=|+.....=+++.... +.. ...|. ..+. ..+..-+.++. -..|. ...++|.+.
T Consensus 571 ~~GtL~~e~F~~YL~QD~~YL~~yar~~a~~~aka~~~~~~~~~~-~~~~--~~~~~E~~~h~~~~~~~~~~~~~~p~~~ 647 (755)
T PRK09517 571 GDGTLRRPEFDFYIDQDAQYLRQYSRALARLSSIAPDSHAQVEWA-QSAA--ECIVVEAELHRSYLSGKEAPSAPSPVTM 647 (755)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-HHHH--HHHHHHHHHHHHHHHhcCcCCCCChHHH
Confidence 55589999999999998887776666665442 211 00111 0000 00111111110 01122 345677888
Q ss_pred HHHHHHHHHhccCcc-c---hhhHHHHHHhhhcchhHHHHHHHHHhccCCCcccceee---cC--ChHHHHHHHHHHHhh
Q 021183 212 SYAKYLEELAEKSAP-L---FLSHFYNIYFSHVAGGQVIERQVSEKILDGRKLEVYRW---EG--DPEEMLKDVREKLNM 282 (316)
Q Consensus 212 ~Yv~~L~ela~~~P~-l---LLAH~YvrYLGdLSGGQiI~r~v~r~ll~g~GL~FY~F---~g--d~~~lK~~yR~~Lna 282 (316)
+|.+||-.++.+... . .|.-|+-.| ..|++.+.+..- .+..|..| +. +-.+.-+.+++.||.
T Consensus 648 aYt~~l~~~a~~g~~~~~laAllPC~w~Y-------~~ig~~l~~~~~--~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~ 718 (755)
T PRK09517 648 AYTDFLIARTYTEDYVVGVAAVLPCYWLY-------AEIGLMLAEQNH--DEHPYKDWLNTYSGEEFIAGTRAAIARVEK 718 (755)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------HHHHHHHHhccC--CCchHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999998765432 2 334466667 445555543221 12234444 22 355566788999999
Q ss_pred cCCCCCHHHHHHHHH
Q 021183 283 LGEHWTRDEKNKSLK 297 (316)
Q Consensus 283 l~e~Ld~eEk~~iIe 297 (316)
+++..|+++++++.+
T Consensus 719 ~~~~~s~~~~~~l~~ 733 (755)
T PRK09517 719 ALENAGPEQRVDAAR 733 (755)
T ss_pred HHhhCCHHHHHHHHH
Confidence 988889998876543
No 11
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=64.95 E-value=1.2e+02 Score=31.24 Aligned_cols=149 Identities=14% Similarity=0.183 Sum_probs=76.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc----CCcc-ccccccccccchHHHHHHHHHhH---hCCCCCcCCCccHH
Q 021183 140 ETWKPSMDAFVKYLVDSQLVFNTIERIVDDS----NDVA-YAYFRKTGLERSEGISRDLEWFS---EQGIIIPEPSTPGV 211 (316)
Q Consensus 140 ~~w~~s~e~Y~~lL~~ly~VY~aLE~al~~~----~d~~-~a~f~~~eL~Rs~aLe~DL~~l~---G~~~~~~~pspa~~ 211 (316)
+.-.++.+.|..||.|=|......=+++... .+.. ...|. ..+. .+-++...+. -.+.....++|.+.
T Consensus 38 ~~GtL~~~~F~~Yl~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~-~~~~---~~~~~e~~~h~~~~~~~~~~~~~p~~~ 113 (504)
T PTZ00347 38 GDGTLDQNAFRTYIAQDTLYLNGYIRILSYCITKSDVTATGGGLL-ELLK---GVLEELKNCHHHYIDNPDAAGPEAACR 113 (504)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH-HHHH---HHHHHHHHHHHHHHhhhhccCCCHHHH
Confidence 4458999999999988766555544554433 2221 01111 0010 1111111111 01222335677889
Q ss_pred HHHHHHHHHhccCcc---c---hhhHHHHHHhhhcchhHHHHHHHHHhccCCCcccceee---cC--ChHHHHHHHHHHH
Q 021183 212 SYAKYLEELAEKSAP---L---FLSHFYNIYFSHVAGGQVIERQVSEKILDGRKLEVYRW---EG--DPEEMLKDVREKL 280 (316)
Q Consensus 212 ~Yv~~L~ela~~~P~---l---LLAH~YvrYLGdLSGGQiI~r~v~r~ll~g~GL~FY~F---~g--d~~~lK~~yR~~L 280 (316)
+|++||..++..... . .+.-|+-.| ..|++.+........+-.|..| +. +-.+.-..+++.|
T Consensus 114 aY~~~l~~~a~~g~~~~~~~l~Al~pC~~~Y-------~~ig~~l~~~~~~~~~~~y~~Wi~~y~~~~f~~~~~~~~~~l 186 (504)
T PTZ00347 114 KYVDFLLASGNADTLGPSVVIAAVIPCARLY-------AWVGQELTNEVELTESHPFRRWLLSYSDEPINTSVEQLESLL 186 (504)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-------HHHHHHHHhccCCCCCChHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999875432 2 333466677 3345555432211122234444 22 3555667888888
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHH
Q 021183 281 NMLGEHWTRDEKNKSLKEAAKSFKFL 306 (316)
Q Consensus 281 nal~e~Ld~eEk~~iIeEA~~AF~lN 306 (316)
|+++ ..++ ++++..+|.-.
T Consensus 187 d~~~---~~~~----~~~~~~~F~~~ 205 (504)
T PTZ00347 187 DKYI---RPGE----FSEVAQAYRRA 205 (504)
T ss_pred HHHh---chhh----HHHHHHHHHHH
Confidence 8885 2233 34455677643
No 12
>COG5398 Heme oxygenase [Inorganic ion transport and metabolism]
Probab=63.89 E-value=15 Score=34.76 Aligned_cols=107 Identities=14% Similarity=0.037 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CC----------ccccccccccccchHHHHHHHHHhHhCCCCCc-----CCCccH
Q 021183 147 DAFVKYLVDSQLVFNTIERIVDDS-ND----------VAYAYFRKTGLERSEGISRDLEWFSEQGIIIP-----EPSTPG 210 (316)
Q Consensus 147 e~Y~~lL~~ly~VY~aLE~al~~~-~d----------~~~a~f~~~eL~Rs~aLe~DL~~l~G~~~~~~-----~pspa~ 210 (316)
..|+....+.|.+.+..+ -++.. .+ ....+|....|+++-.+-+|..-+.+--.... -.-+..
T Consensus 5 ~~lR~gt~~ah~~aEnv~-fmkcfLkg~V~~e~f~kl~~n~yf~ysaleaa~~~~~d~~~l~~i~fp~lnr~~tle~dl~ 83 (238)
T COG5398 5 FKLRQGTQKAHTVAENVG-FMKCFLKGVVERESFRKLLANLYFVYSALEAATQIHKDNPILSSIYFPELNRKATLEKDLL 83 (238)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhccchhhhhHHHhhcCHH
Confidence 468889999999999998 44443 33 22356778899999999999888876432211 112233
Q ss_pred HHHHHHHHHHhccCccchhhHHHHHHhhhcchhHHHHHHHHHhc
Q 021183 211 VSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEKI 254 (316)
Q Consensus 211 ~~Yv~~L~ela~~~P~lLLAH~YvrYLGdLSGGQiI~r~v~r~l 254 (316)
.-|-+-+++.....|...+-+..++|++.+.||..|+...-|.+
T Consensus 84 ~yyg~nwre~I~~sp~t~~yv~rv~~iaa~ap~lLIah~ytRyL 127 (238)
T COG5398 84 YYYGNNWRENIQPSPATIAYVDRVRYIAATAPELLIAHNYTRYL 127 (238)
T ss_pred HHhcccHHHhcCcChhHHHHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 44557788888888988888999999999999999998888877
No 13
>cd07356 HN_L-whirlin_R1_like First harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains. This subgroup contains the first of two harmonin_N_like domains of the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. This first harmonin_N_like domain precedes PDZ1, and is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. This first harmonin_N_like domain has been assayed for interaction with the cytoplasmic domain of cadherin 23 (a component of the Usher network and an interacting partner of the harmonin N-domain), however no interaction could be detected. Th
Probab=37.58 E-value=57 Score=26.22 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021183 273 LKDVREKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVRLIILL 316 (316)
Q Consensus 273 K~~yR~~Lnal~e~Ld~eEk~~iIeEA~~AF~lN~~I~r~I~~~ 316 (316)
.+++...|+.+ ||+.||+.++.- -..|+.+..+..++.||
T Consensus 5 Vr~lh~~l~~l---Ls~~Er~~f~h~-Ln~Y~~~RnV~~Lv~sL 44 (78)
T cd07356 5 VRRLHNALTKL---LSEAEREEFIHC-LNDYHAKRNVYDLVQSL 44 (78)
T ss_pred HHHHHHHHHHH---ccHHHHHHHHHH-HHHHHhcccHHHHHHHH
Confidence 45788899999 999999998875 66788888777776553
No 14
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=31.37 E-value=44 Score=28.00 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 021183 143 KPSMDAFVKYLVDSQLVFNT 162 (316)
Q Consensus 143 ~~s~e~Y~~lL~~ly~VY~a 162 (316)
...+-.|......+-.|++.
T Consensus 40 e~p~p~fgea~~~~~~v~rY 59 (101)
T PF09026_consen 40 EVPVPEFGEAMAYFTMVKRY 59 (101)
T ss_dssp ------HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHhhcchHhhh
Confidence 55566788888777777776
No 15
>PF12981 DUF3865: Domain of Unknown Function with PDB structure (DUF3865); InterPro: IPR024477 This entry represents a family of proteins of unknown function. The Nostoc punctiforme protein (D0VWS1 from SWISSPROT) has been structurally characterised and adopts a heme oxygenase-like fold similar to that of the Chlamydia trachomatis death domain-binding CADD protein. The proposed active sites of the Nostoc and Chlamydia sequences are identical, suggesting similar functions.; PDB: 3B5P_A 3B5O_A.
Probab=29.25 E-value=3.9e+02 Score=25.59 Aligned_cols=122 Identities=14% Similarity=0.139 Sum_probs=68.4
Q ss_pred HHHHHHHHHhHhCCCCCcCCCccHHHHHHHHHHHhccCccchhhHHHHHHhhhcchhHHHHHHHHHh-----c-cCCCcc
Q 021183 187 EGISRDLEWFSEQGIIIPEPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQVIERQVSEK-----I-LDGRKL 260 (316)
Q Consensus 187 ~aLe~DL~~l~G~~~~~~~pspa~~~Yv~~L~ela~~~P~lLLAH~YvrYLGdLSGGQiI~r~v~r~-----l-l~g~GL 260 (316)
.-+.+=+....|.+.....|+++|+.+...+..+-..++...++-+|...-..+.-=+.|...+.+. + .+..-+
T Consensus 94 ~~~~~~l~~~~~~~v~~~~Ps~aT~~fl~sv~~L~t~~~s~vlGa~YAtE~~AIpEl~ll~ei~~~la~rk~~~~~~s~l 173 (231)
T PF12981_consen 94 VVFRKALHTYFGFDVNNRMPSVATTHFLDSVLALFTWDSSEVLGACYATEAAAIPELQLLYEIVNELAQRKGLHNSWSQL 173 (231)
T ss_dssp HHHHHHHHHHHS---TT----HHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTTT---HHHHH-----
T ss_pred HHHHHHHHHHhCCcccccCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhh
Confidence 3344444554455555667899999999999999888888899999998866666666655444221 1 133445
Q ss_pred cceee--cCChHHHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHHHHHHHHHHHH
Q 021183 261 EVYRW--EGDPEEMLKDVREKLNMLGEHWTRDE-KNKSLKEAAKSFKFLGQIVR 311 (316)
Q Consensus 261 ~FY~F--~gd~~~lK~~yR~~Lnal~e~Ld~eE-k~~iIeEA~~AF~lN~~I~r 311 (316)
+||++ +|--.+=+++.++.|+.- .+.++ ...+++....+-..+..+-.
T Consensus 174 ~F~d~HlDg~E~~H~d~L~~~l~~~---i~~e~q~~~f~~Gf~~mI~~m~~wW~ 224 (231)
T PF12981_consen 174 DFYDWHLDGTEQEHKDGLRQFLASY---IDTEEQMPLFKDGFLAMIDIMEDWWK 224 (231)
T ss_dssp -HHHHHCS----HHHHHHHHHHHTT-----GGG-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHH---cCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 78864 454556677888888877 45444 55677776666665555443
No 16
>COG0819 TenA Putative transcription activator [Transcription]
Probab=28.99 E-value=4.9e+02 Score=24.38 Aligned_cols=146 Identities=20% Similarity=0.230 Sum_probs=83.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccchHH----HHH-------HHHHhHhCCC---CCcC
Q 021183 140 ETWKPSMDAFVKYLVDSQLVFNTIERIVDDSNDVAYAYFRKTGLERSEG----ISR-------DLEWFSEQGI---IIPE 205 (316)
Q Consensus 140 ~~w~~s~e~Y~~lL~~ly~VY~aLE~al~~~~d~~~a~f~~~eL~Rs~a----Le~-------DL~~l~G~~~---~~~~ 205 (316)
+.-.+.++.|.-||.|=|+....+-+++.....-+ ..+ ....+... +.. .+.--+|-+- ....
T Consensus 28 ~~GtL~~~~F~~YL~QDy~YL~~~~ra~~~~~~ka-~~~--~~~~~~~~~~~~~~~~E~~~h~~~~~~lgis~~~~~~~~ 104 (218)
T COG0819 28 ADGTLPREKFQFYLVQDYLYLVNFARALALLASKA-PDL--ELMEELAKIIQFLVEGEMELHERLAEELGISLDELLKTE 104 (218)
T ss_pred HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhcC
Confidence 44488999999999998888888888876653100 000 01111111 111 1111112111 1346
Q ss_pred CCccHHHHHHHHHHHhccCc--cch--hhHHHHHHhhhcchhHHHHHHHHHhccCCCccccee-e---c-C-ChHHHHHH
Q 021183 206 PSTPGVSYAKYLEELAEKSA--PLF--LSHFYNIYFSHVAGGQVIERQVSEKILDGRKLEVYR-W---E-G-DPEEMLKD 275 (316)
Q Consensus 206 pspa~~~Yv~~L~ela~~~P--~lL--LAH~YvrYLGdLSGGQiI~r~v~r~ll~g~GL~FY~-F---~-g-d~~~lK~~ 275 (316)
|+|.+.+|++||-..+.... ..+ +.-|+-.| ..|++++.+.... ..-.+|. | + + +-.+..+.
T Consensus 105 ~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y-------~eig~~~~~~~~~-~~~~~Y~~Wi~~Y~s~ef~~~v~~ 176 (218)
T COG0819 105 PSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGY-------AEIGKRLKAKPRA-SPNPPYQEWIDTYASEEFQEAVEE 176 (218)
T ss_pred CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------HHHHHHHHhcccc-CCCCcHHHHHHHcCCHHHHHHHHH
Confidence 77778899999998886543 112 22245555 5667676654421 2445552 3 2 2 35556668
Q ss_pred HHHHHhhcCCCCCHHHHHHHH
Q 021183 276 VREKLNMLGEHWTRDEKNKSL 296 (316)
Q Consensus 276 yR~~Lnal~e~Ld~eEk~~iI 296 (316)
.++.||.+++..++++.+++.
T Consensus 177 ~~~~ld~~~~~~~~~~~~~l~ 197 (218)
T COG0819 177 LEALLDSLAENSSEEELEKLK 197 (218)
T ss_pred HHHHHHHHHhcCCHHHHHHHH
Confidence 888999998777777766543
No 17
>PRK05157 pyrroloquinoline quinone biosynthesis protein PqqC; Provisional
Probab=27.97 E-value=4.5e+02 Score=25.24 Aligned_cols=101 Identities=11% Similarity=0.104 Sum_probs=60.3
Q ss_pred CCccHHHHHHHHHHHhccCc-cchhhHHHHHHhhhcchhHHHHHHHHH---hc--cCCCcccceeecC--ChHHHHHHHH
Q 021183 206 PSTPGVSYAKYLEELAEKSA-PLFLSHFYNIYFSHVAGGQVIERQVSE---KI--LDGRKLEVYRWEG--DPEEMLKDVR 277 (316)
Q Consensus 206 pspa~~~Yv~~L~ela~~~P-~lLLAH~YvrYLGdLSGGQiI~r~v~r---~l--l~g~GL~FY~F~g--d~~~lK~~yR 277 (316)
.+|.|+..|+..-.++...| ..-||-.|+-. .=-+|.+.+++- +| .+.+|++||.--- ...+-.-...
T Consensus 119 ~lP~tr~aVday~~~~r~~~~~eavas~ltE~----~~P~I~~~ri~gl~~~Y~~~~~e~l~yF~~h~~~a~~Dvehal~ 194 (246)
T PRK05157 119 VLPGVRFAVDAYVNFARRAPWLEAVASSLTEL----FAPQIHQERLAGWPEHYPWIDPEGLAYFRSRLTQAPRDVEHGLA 194 (246)
T ss_pred CChHHHHHHHHHHHHHccCCHHHHHHHHHHHH----hhhHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhccchhHHHHHH
Confidence 55666666777777777666 34677666622 234444444433 34 4678899997642 2233333444
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021183 278 EKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVRLI 313 (316)
Q Consensus 278 ~~Lnal~e~Ld~eEk~~iIeEA~~AF~lN~~I~r~I 313 (316)
..|+.+ -|+++++++++.+...=+.--.+|.-|
T Consensus 195 ~~l~~~---~t~e~q~~al~al~~k~d~Lw~~LDai 227 (246)
T PRK05157 195 YVLDHA---TTREQQERALEALQFKLDVLWSMLDAL 227 (246)
T ss_pred HHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555 377999999888776655554544443
No 18
>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []. Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.
Probab=24.36 E-value=93 Score=29.32 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 021183 272 MLKDVREKLNMLGEHWTRDEKNKSLKEAAKSF 303 (316)
Q Consensus 272 lK~~yR~~Lnal~e~Ld~eEk~~iIeEA~~AF 303 (316)
=|++...-|..+ +|.|||++|+.||++..
T Consensus 41 TWdDcqqLL~~L---fT~EEr~rI~~~Ark~v 69 (211)
T PF02093_consen 41 TWDDCQQLLQTL---FTTEERERILQEARKYV 69 (211)
T ss_dssp -HHHHHHHHHHH---S-HHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHH---cCHHHHHHHHHHHHHHh
Confidence 377888889999 99999999999999854
No 19
>TIGR02111 PQQ_syn_pqqC coenzyme PQQ biosynthesis protein C. This model describes the coenzyme PQQ (pyrrolo-quinoline-quinone) biosynthesis protein PqqC.In contrast to the broader model pfam05312, this model does not include related proteins likely to be functionally distinct from PqqC, such as homologs found in the Chlamydias.
Probab=24.20 E-value=5.4e+02 Score=24.69 Aligned_cols=99 Identities=12% Similarity=0.105 Sum_probs=56.9
Q ss_pred CccHHHHHHHHHHHhccCccc-hhhHHHHHHhhhcchhHHHHHHHH---Hhc--cCCCcccceeec--CChHHHHHHHHH
Q 021183 207 STPGVSYAKYLEELAEKSAPL-FLSHFYNIYFSHVAGGQVIERQVS---EKI--LDGRKLEVYRWE--GDPEEMLKDVRE 278 (316)
Q Consensus 207 spa~~~Yv~~L~ela~~~P~l-LLAH~YvrYLGdLSGGQiI~r~v~---r~l--l~g~GL~FY~F~--gd~~~lK~~yR~ 278 (316)
+|.|+..|+-.-.++...|.+ -+|-.||- +.--+|.+.++. ++| .+.+|++||+-- ....+.-..+.-
T Consensus 113 lP~trfaVday~~f~r~~~~~eavasslTE----~f~P~I~~~ri~gl~~~Y~~~~~e~l~yF~~r~~qa~rd~e~~l~~ 188 (239)
T TIGR02111 113 LPGTRFAVDAYVHFVREKSLLEAIASSLTE----LFAPQIHSERVAGMLQHYDFIDDAALAYFRKRLTQAPRDVEFGLDY 188 (239)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHhHHHHHHHHHhHHHHCCCCCHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 566665666666676666654 77777772 222344444433 233 356778888763 122333334444
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 021183 279 KLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVRL 312 (316)
Q Consensus 279 ~Lnal~e~Ld~eEk~~iIeEA~~AF~lN~~I~r~ 312 (316)
.|+.+ -|+++++++++.+...=..--.++.-
T Consensus 189 ~l~~~---~t~e~Q~~~l~al~fk~dvLw~~LDa 219 (239)
T TIGR02111 189 VLDHA---TTREKQEAALEALTFKCDVLWAQLDA 219 (239)
T ss_pred HHHHc---CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666 37889999988876555544444443
No 20
>PHA02659 endothelin precursor; Provisional
Probab=22.66 E-value=69 Score=24.99 Aligned_cols=11 Identities=45% Similarity=1.479 Sum_probs=8.0
Q ss_pred eeeeecCCCCC
Q 021183 44 LKLCCCDSSDS 54 (316)
Q Consensus 44 ~~~~~~~~~~~ 54 (316)
+.+|||...-|
T Consensus 16 imlcccendE~ 26 (70)
T PHA02659 16 IMLCCCENDES 26 (70)
T ss_pred eeEEEecCCCc
Confidence 67899976544
No 21
>TIGR02792 PCA_ligA protocatechuate 4,5-dioxygenase, alpha subunit. Protocatechuate (PCA) 4,5-dioxygenase is the first enzyme in the PCA 4,5-cleavage pathway that is an alternative to PCA 3,4-cleavage and PCA 2,3 cleavage pathways. PCA is an intermediate in the breakdown of lignin (hence the gene symbol ligA) and other compounds. Members of this family are the alpha chain of PCA 4,5-dioxygenase, or the equivalent domain of a fusion protein.
Probab=22.41 E-value=97 Score=26.73 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 021183 268 DPEEMLKDVREKLNMLGEHWTRDEKNKSLK 297 (316)
Q Consensus 268 d~~~lK~~yR~~Lnal~e~Ld~eEk~~iIe 297 (316)
....|+.+-++.+++.+ ||++||+.|++
T Consensus 33 nRerF~ade~Ay~d~~~--Lt~eqk~av~~ 60 (117)
T TIGR02792 33 NRERFKADESAYLDEWN--LTPAQKQAVLA 60 (117)
T ss_pred HHHHHHhCHHHHHHHcC--CCHHHHHHHHh
Confidence 57789999999999998 99999988765
No 22
>cd07355 HN_L-delphilin-R2_like Second harmonin_N_like domain (repeat 2) of L-delphilin, and related domains. This subgroup contains the second of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin), and related domains. Delphilin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain in L-delphilin follows the second PDZ protein-binding domain, PDZ2; it is also found in the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta). It is a putative protein-binding module based on its sequence similarity to the harmonin N-domain. The first harmonin_N_like domain of L-delphilin belongs to a different subgroup and is missing from S-delphilin.
Probab=21.40 E-value=1.9e+02 Score=23.45 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021183 274 KDVREKLNMLGEHWTRDEKNKSLKEAAKSFKFLGQIVRLIIL 315 (316)
Q Consensus 274 ~~yR~~Lnal~e~Ld~eEk~~iIeEA~~AF~lN~~I~r~I~~ 315 (316)
+.|.+.||.+ ||+.||.-|.+ |.+-|..+..|=.+|.+
T Consensus 6 Rtf~~~mehl---Lt~~ER~~i~q-aL~~y~~~Rnvd~Li~~ 43 (80)
T cd07355 6 RTFKQQMEHL---LTPPERYGIKK-ALEDYFQHRNIDTLIVD 43 (80)
T ss_pred hhHHHHHHHh---CCHHHHHHHHH-HHHHHHHhccHHHHHhh
Confidence 5788888888 99999976555 56667777777776654
No 23
>cd07924 PCA_45_Doxase_A The A subunit of Protocatechuate 4,5-dioxygenase (LigAB) is the smaller, non-catalytic subunit. The A subunit is the non-catalytic subunit of Protocatechuate (PCA) 4,5-dioxygenase (LigAB), which is composed of A and B subunits that form a tetramer. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As a member of the Class III extradiol dioxygenase family, LigAB uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=20.82 E-value=1.1e+02 Score=26.47 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 021183 268 DPEEMLKDVREKLNMLGEHWTRDEKNKSLK 297 (316)
Q Consensus 268 d~~~lK~~yR~~Lnal~e~Ld~eEk~~iIe 297 (316)
....|+.+-++.+++.+ ||++||+.|++
T Consensus 36 nRerF~ade~Ay~~~~~--Lteeqr~aV~~ 63 (121)
T cd07924 36 NRERFKADERAYLDKWP--MTEEQKQAVLA 63 (121)
T ss_pred HHHHHHhCHHHHHHHcC--CCHHHHHHHHH
Confidence 57789999999999998 99999988765
Done!