BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021185
         (316 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q56030|ENVE_SALTY Probable lipoprotein EnvE OS=Salmonella typhimurium (strain LT2 /
           SGSC1412 / ATCC 700720) GN=envE PE=4 SV=2
          Length = 173

 Score = 35.4 bits (80), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 228 YIVHLGLPTLGVTTEPELNTVGQASDDLEQIANPVALAPSQSRRYDNRPEVRRQSYIEMQ 287
           Y ++L  P   V T+ ++N+ G   +D EQI     L         NR  +R   +++ Q
Sbjct: 30  YSINLSFP---VITQNQINSGGYYINDAEQIRTTDGLCLDAGPDQQNRLTLRECKHVQSQ 86

Query: 288 IFRNRWKHAVEDDKCWVDPYGQSTNQ 313
           +F        + +KC +D  GQ T +
Sbjct: 87  LFSFHRDRITQGEKC-LDAAGQGTKE 111


>sp|B7IE34|DER_THEAB GTPase Der OS=Thermosipho africanus (strain TCF52B) GN=der PE=3
           SV=1
          Length = 439

 Score = 33.1 bits (74), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 22/150 (14%)

Query: 20  LLAIAAGIKQKKIVD----------QIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAI 69
           L    AG+++K  VD          + ++   + D VV+L      +D  + +   D+ I
Sbjct: 232 LFVDTAGLRRKSKVDYKSLDMYSNVRSIKSIENSDVVVIL------IDAIEGITHQDQRI 285

Query: 70  HVSAANQTKWWFAKRFLHPDIVAEYNY-----IFLWDEDIGVENFNPRRYLSIVKDEGLE 124
              A N+ K      F   D++  + Y     I  ++E +   N++P  +LS +  +G++
Sbjct: 286 AGIAENRGKATIVA-FNKIDLIKNFKYKKEEFIDQFNEKLYFINYSPLIFLSAINKKGID 344

Query: 125 ISQPALDPVKSEVHHPITARRRNSKAHRRM 154
               A+D     +H+ +     NS   R M
Sbjct: 345 NLINAIDEAYKSLHYRVQTSAVNSAIQRMM 374


>sp|Q98636|VP4_ROTEL Outer capsid protein VP4 OS=Rotavirus A (isolate Equine/United
           Kingdom/L338/1988
           G13-P12[18]-I6-Rx-Cx-M6-A6-Nx-Tx-Ex-Hx) PE=2 SV=1
          Length = 776

 Score = 33.1 bits (74), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 56  VDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDE--DIGVENFNPRR 113
           VD W  L   DR + V   N T  W A   + PD+  E     L+ +   I V N +  +
Sbjct: 78  VDYWMLLAPTDRGVVVEGTNNTNRWLAIILVEPDVPTEERTYTLFGQQAQITVANDSQLK 137

Query: 114 YLSIVKDEGLEISQPALDPVKSEVHHPITARRRNS--KAHRRMYKYKG 159
           +  IV      +S+  LD   ++    ++A +  +  K   R+Y Y G
Sbjct: 138 WKFIV------VSKQTLDGAYAQYGPLLSATKLYAVMKHSGRIYTYSG 179


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,822,343
Number of Sequences: 539616
Number of extensions: 5368427
Number of successful extensions: 10803
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10803
Number of HSP's gapped (non-prelim): 4
length of query: 316
length of database: 191,569,459
effective HSP length: 117
effective length of query: 199
effective length of database: 128,434,387
effective search space: 25558443013
effective search space used: 25558443013
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)