Query 021185
Match_columns 316
No_of_seqs 130 out of 151
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 08:16:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 6E-122 1E-126 865.9 24.2 268 1-299 26-293 (294)
2 cd04185 GT_2_like_b Subfamily 95.2 0.069 1.5E-06 45.5 7.0 101 92-237 78-178 (202)
3 cd04186 GT_2_like_c Subfamily 94.6 0.088 1.9E-06 42.3 5.7 92 93-233 74-166 (166)
4 TIGR01556 rhamnosyltran L-rham 94.5 0.16 3.4E-06 46.4 7.7 128 92-233 72-202 (281)
5 cd02510 pp-GalNAc-T pp-GalNAc- 92.4 2.5 5.3E-05 39.1 12.0 139 92-234 82-227 (299)
6 cd02526 GT2_RfbF_like RfbF is 90.3 0.65 1.4E-05 40.3 5.6 125 93-233 75-205 (237)
7 cd02520 Glucosylceramide_synth 89.7 0.44 9.4E-06 41.0 4.0 93 92-233 85-177 (196)
8 cd02525 Succinoglycan_BP_ExoA 88.2 2 4.3E-05 37.1 7.1 127 92-233 80-209 (249)
9 PF13641 Glyco_tranf_2_3: Glyc 88.0 1.1 2.3E-05 38.9 5.2 198 19-236 3-214 (228)
10 cd06421 CESA_CelA_like CESA_Ce 85.5 0.47 1E-05 40.9 1.7 129 92-237 83-216 (234)
11 cd04195 GT2_AmsE_like GT2_AmsE 84.3 0.77 1.7E-05 38.8 2.4 119 91-230 78-199 (201)
12 COG1216 Predicted glycosyltran 83.8 5.9 0.00013 37.2 8.3 138 94-238 85-226 (305)
13 cd06433 GT_2_WfgS_like WfgS an 81.3 2.9 6.4E-05 34.4 4.7 37 92-128 74-111 (202)
14 cd06442 DPM1_like DPM1_like re 81.0 1.7 3.6E-05 37.3 3.3 36 92-127 77-112 (224)
15 PF01762 Galactosyl_T: Galacto 79.6 7.2 0.00016 34.3 6.9 176 2-215 7-186 (195)
16 PF13506 Glyco_transf_21: Glyc 77.0 1.4 2.9E-05 38.9 1.5 125 92-235 30-156 (175)
17 cd06437 CESA_CaSu_A2 Cellulose 77.0 2.6 5.7E-05 36.9 3.3 132 92-237 86-218 (232)
18 PLN02726 dolichyl-phosphate be 76.6 6.1 0.00013 35.3 5.7 38 92-129 92-129 (243)
19 cd06434 GT2_HAS Hyaluronan syn 68.2 2.9 6.3E-05 36.2 1.5 41 92-132 76-116 (235)
20 PF00535 Glycos_transf_2: Glyc 67.5 4.3 9.2E-05 32.0 2.2 38 92-129 77-114 (169)
21 cd04188 DPG_synthase DPG_synth 66.9 3.4 7.3E-05 35.7 1.6 37 92-128 81-117 (211)
22 cd02522 GT_2_like_a GT_2_like_ 66.3 15 0.00032 31.4 5.5 85 43-132 27-111 (221)
23 cd06439 CESA_like_1 CESA_like_ 65.7 6.9 0.00015 34.4 3.4 39 93-131 109-147 (251)
24 cd06913 beta3GnTL1_like Beta 1 63.6 14 0.0003 32.0 4.9 124 91-233 82-210 (219)
25 PF13632 Glyco_trans_2_3: Glyc 61.9 9.8 0.00021 32.3 3.5 123 96-235 1-126 (193)
26 cd06435 CESA_NdvC_like NdvC_li 61.2 5 0.00011 35.0 1.6 123 93-229 84-206 (236)
27 cd06420 GT2_Chondriotin_Pol_N 55.0 37 0.00079 28.0 5.8 27 92-118 78-104 (182)
28 PTZ00260 dolichyl-phosphate be 54.9 21 0.00046 34.5 4.9 189 18-226 71-286 (333)
29 KOG2287 Galactosyltransferases 52.0 20 0.00044 35.3 4.3 174 1-215 114-292 (349)
30 cd04187 DPM1_like_bac Bacteria 50.0 16 0.00034 30.5 2.8 34 92-126 79-112 (181)
31 PF02434 Fringe: Fringe-like; 47.9 23 0.0005 33.2 3.8 126 91-241 84-216 (252)
32 PF10111 Glyco_tranf_2_2: Glyc 47.8 34 0.00074 31.9 5.0 200 21-233 2-223 (281)
33 PF12621 DUF3779: Phosphate me 47.0 16 0.00034 29.8 2.3 52 83-139 34-87 (95)
34 PRK11204 N-glycosyltransferase 46.8 26 0.00057 34.0 4.2 201 16-238 53-266 (420)
35 cd00761 Glyco_tranf_GTA_type G 45.0 19 0.00042 27.3 2.4 22 93-114 77-98 (156)
36 cd06423 CESA_like CESA_like is 44.7 13 0.00029 29.0 1.5 38 93-130 78-116 (180)
37 cd04184 GT2_RfbC_Mx_like Myxoc 42.4 21 0.00045 30.0 2.4 37 92-128 82-119 (202)
38 cd04192 GT_2_like_e Subfamily 41.1 22 0.00047 30.3 2.4 38 92-129 81-118 (229)
39 cd06427 CESA_like_2 CESA_like_ 37.3 32 0.0007 30.5 2.9 38 92-129 83-122 (241)
40 cd04196 GT_2_like_d Subfamily 36.9 27 0.0006 29.3 2.3 47 182-233 158-204 (214)
41 TIGR03469 HonB hopene-associat 34.6 38 0.00083 33.1 3.2 33 94-126 134-166 (384)
42 PF09258 Glyco_transf_64: Glyc 33.6 80 0.0017 29.7 5.0 95 26-121 8-103 (247)
43 PF12996 DUF3880: DUF based on 33.1 21 0.00044 27.8 0.9 25 88-122 13-37 (79)
44 PF09828 Chrome_Resist: Chroma 32.0 31 0.00067 30.5 1.9 55 79-140 15-87 (135)
45 cd06430 GT8_like_2 GT8_like_2 32.0 1.6E+02 0.0036 29.0 7.1 102 19-122 2-124 (304)
46 KOG0747 Putative NAD+-dependen 31.8 60 0.0013 32.6 4.0 75 17-91 7-82 (331)
47 KOG2264 Exostosin EXT1L [Signa 26.8 87 0.0019 34.2 4.4 97 25-122 631-753 (907)
48 KOG2547 Ceramide glucosyltrans 26.5 1.2E+02 0.0025 31.6 5.0 114 91-224 168-289 (431)
49 cd04190 Chitin_synth_C C-termi 25.7 94 0.002 28.0 3.9 30 91-120 71-100 (244)
50 KOG1555 26S proteasome regulat 25.4 36 0.00079 33.9 1.3 41 163-203 80-120 (316)
51 cd00505 Glyco_transf_8 Members 25.2 1.3E+02 0.0028 27.4 4.8 89 17-117 30-118 (246)
52 PRK11498 bcsA cellulose syntha 24.9 2.3E+02 0.0049 31.9 7.3 109 16-129 259-376 (852)
53 cd06438 EpsO_like EpsO protein 24.6 74 0.0016 26.8 2.9 29 92-120 80-108 (183)
54 cd02515 Glyco_transf_6 Glycosy 24.6 3.2E+02 0.0069 26.9 7.5 95 16-114 34-145 (271)
55 PLN02867 Probable galacturonos 24.0 32 0.0007 36.5 0.7 34 83-117 334-367 (535)
56 TIGR02165 cas_GSU0054 CRISPR-a 23.6 13 0.00028 37.7 -2.1 20 192-211 88-107 (465)
57 cd04191 Glucan_BSP_ModH Glucan 23.6 55 0.0012 30.6 2.1 36 92-127 94-130 (254)
58 TIGR03472 HpnI hopanoid biosyn 22.1 63 0.0014 31.4 2.2 127 91-232 124-252 (373)
59 PRK10073 putative glycosyl tra 22.0 82 0.0018 30.4 3.0 107 16-127 5-119 (328)
60 PF07745 Glyco_hydro_53: Glyco 21.8 37 0.0008 33.8 0.6 30 25-54 52-82 (332)
61 cd04179 DPM_DPG-synthase_like 21.3 63 0.0014 26.6 1.8 35 95-129 81-115 (185)
62 PRK10714 undecaprenyl phosphat 21.3 70 0.0015 30.8 2.4 105 16-126 5-122 (325)
63 PLN02718 Probable galacturonos 21.2 1.4E+02 0.003 32.4 4.7 83 33-117 330-440 (603)
64 PF14538 Raptor_N: Raptor N-te 20.9 53 0.0012 29.1 1.3 11 45-55 90-100 (154)
65 PF02593 dTMP_synthase: Thymid 20.3 5.1E+02 0.011 24.5 7.7 93 22-132 2-117 (217)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=6.1e-122 Score=865.89 Aligned_cols=268 Identities=65% Similarity=1.195 Sum_probs=256.9
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEEEecccchhhHHHHHhhCCCCCcEEEEEEecCcccccccccccCceeEEEeecccchh
Q 021185 1 MRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWW 80 (316)
Q Consensus 1 ~r~Lwg~~~~~~~~~~~k~Ll~~~VG~kqk~~vd~~v~kf~~~nF~v~LfhYDg~vd~w~d~ews~~aiHv~a~kqtKWw 80 (316)
||||||+|+++. ..++|||||||||+|||++||++|+|| ++|||||||||||+||+|++||||++||||++.||||||
T Consensus 26 ~r~lw~~p~~~~-~~~~k~Lla~~VG~kqk~~vd~~v~Kf-~~nF~i~LfhYDg~vd~w~~~~ws~~aiHv~~~kqtKww 103 (294)
T PF05212_consen 26 LRPLWGNPSEDL-PKKPKYLLAMTVGIKQKDNVDAIVKKF-SDNFDIMLFHYDGRVDEWDDFEWSDRAIHVSARKQTKWW 103 (294)
T ss_pred eeecCCCccccc-cCCCceEEEEEecHHHHhhhhHHHhhh-ccCceEEEEEecCCcCchhhcccccceEEEEeccceEEe
Confidence 799999999985 567899999999999999999999999 899999999999999999999999999999999999999
Q ss_pred hhccccCccccccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCcCCCCCccccccceeccCcccceeeecccCC
Q 021185 81 FAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGS 160 (316)
Q Consensus 81 ~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPALd~~s~~~sh~iT~r~~~~~vHr~~~~~~~~ 160 (316)
|||||||||||++|||||||||||+||+|+|+|||+||++||||||||||+++||++||+||+|++.++|||. .++.
T Consensus 104 ~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~~~~iT~R~~~~~vhr~---~~~~ 180 (294)
T PF05212_consen 104 FAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEIHHPITKRRPDSEVHRK---TRGG 180 (294)
T ss_pred ehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCceeeeeEEeecCCceeEec---cCCC
Confidence 9999999999999999999999999999999999999999999999999999998999999999999999983 5777
Q ss_pred CCCCCCCCCCCccceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceEEEccCCCCCCC
Q 021185 161 GRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLGVT 240 (316)
Q Consensus 161 ~~C~~~~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~ptlg~~ 240 (316)
+.|.+++++||||||||||||||||+|||||||||||||+|||||||+|+||+ +++++||||||||||+|+|+|||||+
T Consensus 181 ~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~-~~~~~kiGVVDs~~VvH~gvptLG~~ 259 (294)
T PF05212_consen 181 PRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCA-GDRHKKIGVVDSQYVVHTGVPTLGGQ 259 (294)
T ss_pred CCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHh-ccccccEEEEeeEEEEEcCCCcCCCc
Confidence 88888999999999999999999999999999999999999999999999999 78999999999999999999999998
Q ss_pred CCcccccccCCCchhhhhccccccCCCCCCCCCChHHHHhhhHHHHHHHHHHHHHhHhc
Q 021185 241 TEPELNTVGQASDDLEQIANPVALAPSQSRRYDNRPEVRRQSYIEMQIFRNRWKHAVED 299 (316)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vr~r~~~E~~~f~~R~~~a~~~ 299 (316)
+.++. +.++|.+||+||++||++|++||++|++|
T Consensus 260 ~~~~~-------------------------~~~~~~~Vr~r~~~E~~~F~~R~~~a~~~ 293 (294)
T PF05212_consen 260 GNSEK-------------------------GKDPREEVRRRSFAEMRIFQKRWANAVKE 293 (294)
T ss_pred ccccc-------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 86632 45789999999999999999999999986
No 2
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.24 E-value=0.069 Score=45.49 Aligned_cols=101 Identities=17% Similarity=0.242 Sum_probs=68.8
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCcCCCCCccccccceeccCcccceeeecccCCCCCCCCCCCCC
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 171 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPALd~~s~~~sh~iT~r~~~~~vHr~~~~~~~~~~C~~~~~~pp 171 (316)
+.+|||++.|+|..++..-+.++.+.+++.++.+..|..-...+ +
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-----------------------------------~ 122 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-----------------------------------S 122 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-----------------------------------c
Confidence 57999999999999998888888888775555555443322111 1
Q ss_pred ccceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceEEEccCCCC
Q 021185 172 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTL 237 (316)
Q Consensus 172 cTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~ptl 237 (316)
+.+ -+++|++++.+ .. ..+.-..||-|.-+.+-+. ..+.+| .+.+..+.|....+.
T Consensus 123 ~~~------~~~~~~~~~~~-g~-~~~~~~~~~eD~~~~~r~~-~~G~~i-~~~~~~~~h~~~~~~ 178 (202)
T cd04185 123 FVG------VLISRRVVEKI-GL-PDKEFFIWGDDTEYTLRAS-KAGPGI-YVPDAVVVHKTAINK 178 (202)
T ss_pred eEE------EEEeHHHHHHh-CC-CChhhhccchHHHHHHHHH-HcCCcE-EecceEEEEcccccc
Confidence 112 14889999877 33 3444567887877755443 245789 999999999985443
No 3
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.62 E-value=0.088 Score=42.27 Aligned_cols=92 Identities=20% Similarity=0.150 Sum_probs=61.7
Q ss_pred cccEEEEecccccCCCCCHHHHHHHHHHh-CCcccCCCcCCCCCccccccceeccCcccceeeecccCCCCCCCCCCCCC
Q 021185 93 EYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 171 (316)
Q Consensus 93 ~YDYIflwDDDL~vd~f~i~ry~~ivr~~-gLeISQPALd~~s~~~sh~iT~r~~~~~vHr~~~~~~~~~~C~~~~~~pp 171 (316)
.+|||++.|+|..++...+.++.+.+.+. +..+..+.
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------------------ 111 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------------------ 111 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------------------
Confidence 79999999999999888888887754443 22222222
Q ss_pred ccceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceEEEcc
Q 021185 172 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 233 (316)
Q Consensus 172 cTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~ 233 (316)
+=.-+.+|++++++.+ . .+++....+|-|..+...+. ..+.+|..+....+.|.+
T Consensus 112 ----~~~~~~~~~~~~~~~~-~-~~~~~~~~~~eD~~~~~~~~-~~g~~i~~~~~~~~~h~~ 166 (166)
T cd04186 112 ----VSGAFLLVRREVFEEV-G-GFDEDFFLYYEDVDLCLRAR-LAGYRVLYVPQAVIYHHG 166 (166)
T ss_pred ----CceeeEeeeHHHHHHc-C-CCChhhhccccHHHHHHHHH-HcCCeEEEccceEEEecC
Confidence 0012558999999976 2 23443334777777765543 245799999999999964
No 4
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=94.49 E-value=0.16 Score=46.39 Aligned_cols=128 Identities=15% Similarity=0.084 Sum_probs=73.5
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHh--CCcccCCCc-CCCCCccccccceeccCcccceeeecccCCCCCCCCCC
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE--GLEISQPAL-DPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYST 168 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~ivr~~--gLeISQPAL-d~~s~~~sh~iT~r~~~~~vHr~~~~~~~~~~C~~~~~ 168 (316)
+.+|||++.|+|..++.-.+.++++.+++. +.-+..|.. +.+.+ ...+...... ... +.. .... ..
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~-~~~-------~~~~-~~ 140 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTS-RRLPAIHLDG-LLL-RQI-------SLDG-LT 140 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCc-ccCCceeecc-cce-eee-------cccc-cC
Confidence 379999999999999999999999988876 567777764 33221 1122211111 000 000 0000 00
Q ss_pred CCCccceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceEEEcc
Q 021185 169 APPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 233 (316)
Q Consensus 169 ~ppcTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~ 233 (316)
.+.-+.++=.-..+++|++++.+ .++ ++..-.++.|.-|..-+. ..+.+|.++....+.|..
T Consensus 141 ~~~~~~~~~~sg~li~~~~~~~i-G~f-de~~fi~~~D~e~~~R~~-~~G~~i~~~~~~~~~H~~ 202 (281)
T TIGR01556 141 TPQKTSFLISSGCLITREVYQRL-GMM-DEELFIDHVDTEWSLRAQ-NYGIPLYIDPDIVLEHRI 202 (281)
T ss_pred CceeccEEEcCcceeeHHHHHHh-CCc-cHhhcccchHHHHHHHHH-HCCCEEEEeCCEEEEEec
Confidence 11111111001236899999988 444 333334667877743332 235689999999999974
No 5
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=92.42 E-value=2.5 Score=39.13 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=76.0
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCcCCCCC-cccccccee-cc---CcccceeeecccCCCCCCCC
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKS-EVHHPITAR-RR---NSKAHRRMYKYKGSGRCDDY 166 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPALd~~s~-~~sh~iT~r-~~---~~~vHr~~~~~~~~~~C~~~ 166 (316)
+..|||++.|.|..++..-++++++.+.+..-.+.-|.+..-.+ ...+.-... .. ...++...........+...
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 67899999999999999999999999998887777787653211 122221110 00 00000000000000000111
Q ss_pred CCCCCccceEEEecccccHHHHHHHhhhhcCCCcccch-hhHHhh-hhhcCCCCCcEEEEeeceEEEccC
Q 021185 167 STAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWG-LDIQLG-YCAQGDRTKNVGVVDSEYIVHLGL 234 (316)
Q Consensus 167 ~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWG-LD~~w~-~c~~g~~~~kiGVVDa~~V~H~~~ 234 (316)
+..+..+.++-..+=+|+|++|..+ ..+ ......|| =|.-+. ++.+ .+.+|-++-...|.|...
T Consensus 162 ~~~~~~~~~~~g~~~~irr~~~~~v-Ggf-De~~~~~~~ED~Dl~~R~~~--~G~~i~~~p~a~v~H~~~ 227 (299)
T cd02510 162 PTAPIRSPTMAGGLFAIDREWFLEL-GGY-DEGMDIWGGENLELSFKVWQ--CGGSIEIVPCSRVGHIFR 227 (299)
T ss_pred CCCCccCccccceeeEEEHHHHHHh-CCC-CCcccccCchhHHHHHHHHH--cCCeEEEeeccEEEEecc
Confidence 1122223333333446899999988 333 44455665 344442 2221 235799999999999864
No 6
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=90.27 E-value=0.65 Score=40.30 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=62.7
Q ss_pred cccEEEEecccccCCCCCHHHHH---HHHH-HhCCcccCCCcCCCCCccccccceeccCcccceeeecccCCCCCCCCCC
Q 021185 93 EYNYIFLWDEDIGVENFNPRRYL---SIVK-DEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYST 168 (316)
Q Consensus 93 ~YDYIflwDDDL~vd~f~i~ry~---~ivr-~~gLeISQPALd~~s~~~sh~iT~r~~~~~vHr~~~~~~~~~~C~~~~~ 168 (316)
.||||++.|+|..++...+.+++ .... ...+-+..|......+....... +.....+ .. .. +.
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~--~~----~~---- 141 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGV-RKSGYKL--RI--QK----EG---- 141 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccce-eccCccc--ee--cc----cc----
Confidence 68999999999999988888885 2222 22445555554322111111111 1100000 00 00 00
Q ss_pred CCCcc--ceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceEEEcc
Q 021185 169 APPCI--GWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 233 (316)
Q Consensus 169 ~ppcT--gFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~ 233 (316)
..++. .++=.-+-+|+|++++.+ ..+ .+.....|-|+.+...+. ..+.++..+....|.|..
T Consensus 142 ~~~~~~~~~~~~~~~~~rr~~~~~~-ggf-d~~~~~~~eD~d~~~r~~-~~G~~~~~~~~~~v~h~~ 205 (237)
T cd02526 142 EEGLKEVDFLITSGSLISLEALEKV-GGF-DEDLFIDYVDTEWCLRAR-SKGYKIYVVPDAVLKHEL 205 (237)
T ss_pred cCCceEeeeeeccceEEcHHHHHHh-CCC-CHHHcCccchHHHHHHHH-HcCCcEEEEcCeEEEecc
Confidence 00010 011011125899999988 333 222223355666654442 235689888888888864
No 7
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=89.69 E-value=0.44 Score=41.04 Aligned_cols=93 Identities=17% Similarity=0.141 Sum_probs=55.2
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCcCCCCCccccccceeccCcccceeeecccCCCCCCCCCCCCC
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 171 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPALd~~s~~~sh~iT~r~~~~~vHr~~~~~~~~~~C~~~~~~pp 171 (316)
+.+|||++.|.|..++...+.++++.+. +|..+--.|. |
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~-------~~~~~~v~~~--------------------------~-------- 123 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLM-------DPGVGLVTCL--------------------------C-------- 123 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhh-------CCCCCeEEee--------------------------c--------
Confidence 5799999999999887777777765542 2322211110 0
Q ss_pred ccceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceEEEcc
Q 021185 172 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 233 (316)
Q Consensus 172 cTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~ 233 (316)
++ ..+=+|+|++++.+=. + .....-.+=|+.+...+. ..+.+|.+++.. ++|..
T Consensus 124 ~~----g~~~~~r~~~~~~~gg-f-~~~~~~~~eD~~l~~rl~-~~G~~i~~~~~~-~~~~~ 177 (196)
T cd02520 124 AF----GKSMALRREVLDAIGG-F-EAFADYLAEDYFLGKLIW-RLGYRVVLSPYV-VMQPL 177 (196)
T ss_pred cc----CceeeeEHHHHHhccC-h-HHHhHHHHHHHHHHHHHH-HcCCeEEEcchh-eeccC
Confidence 00 1234789999987722 2 221223467888876654 346789888775 55543
No 8
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=88.22 E-value=2 Score=37.13 Aligned_cols=127 Identities=9% Similarity=-0.011 Sum_probs=68.0
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCcCCCCCccccccceeccCcccceeeecccCCCCCCCC-C-CC
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDY-S-TA 169 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPALd~~s~~~sh~iT~r~~~~~vHr~~~~~~~~~~C~~~-~-~~ 169 (316)
+.+|||.+.|+|..++...++++++.+++.+..+.++...................+.+. ......+... . ..
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 154 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLG-----SGGSAYRGGAVKIGY 154 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhc-----cCCcccccccccccc
Confidence 479999999999999999999999888888877766554321100111000000000000 0000000000 0 00
Q ss_pred CCccceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhh-hhhcCCCCCcEEEEeeceEEEcc
Q 021185 170 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLG-YCAQGDRTKNVGVVDSEYIVHLG 233 (316)
Q Consensus 170 ppcTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~-~c~~g~~~~kiGVVDa~~V~H~~ 233 (316)
..+.++ | +|+|++|+.+ ..+ +. ....|-|+.+. +|.+ .+.++..+....+.|..
T Consensus 155 ~~~~~~---~--~~~~~~~~~~-g~~-~~-~~~~~eD~~l~~r~~~--~G~~~~~~~~~~~~~~~ 209 (249)
T cd02525 155 VDTVHH---G--AYRREVFEKV-GGF-DE-SLVRNEDAELNYRLRK--AGYKIWLSPDIRVYYYP 209 (249)
T ss_pred cccccc---c--eEEHHHHHHh-CCC-Cc-ccCccchhHHHHHHHH--cCcEEEEcCCeEEEEcC
Confidence 011111 1 5789999887 323 22 22346777665 4442 35689999988888875
No 9
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=88.02 E-value=1.1 Score=38.87 Aligned_cols=198 Identities=17% Similarity=0.110 Sum_probs=88.9
Q ss_pred cEEEEEecccchhhHHHHHhhCCC---CCcEEEEEEecCccccccc-c-----cccCceeEEEeec---c--cchhhhcc
Q 021185 19 NLLAIAAGIKQKKIVDQIVRKFPS---KDFVVMLFHYDGVVDEWKD-L-----VWADRAIHVSAAN---Q--TKWWFAKR 84 (316)
Q Consensus 19 ~Ll~~~VG~kqk~~vd~~v~kf~~---~nF~v~LfhYDg~vd~w~d-~-----ews~~aiHv~a~k---q--tKWw~akR 84 (316)
-.|++|+-.. ...+...++-... .++.|+++- |+..++=.+ + ++....+++.... + +|-.-++.
T Consensus 3 v~Vvip~~~~-~~~l~~~l~sl~~~~~~~~~v~vvd-~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~ 80 (228)
T PF13641_consen 3 VSVVIPAYNE-DDVLRRCLESLLAQDYPRLEVVVVD-DGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNE 80 (228)
T ss_dssp EEEE--BSS--HHHHHHHHHHHTTSHHHTEEEEEEE-E-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHH
T ss_pred EEEEEEecCC-HHHHHHHHHHHHcCCCCCeEEEEEE-CCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHH
Confidence 4455665433 2355555554432 468888876 333333211 1 2333234543322 2 23322222
Q ss_pred ccCccccccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCcCCCCCccccccceeccCcccceeeecccCCCCCC
Q 021185 85 FLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCD 164 (316)
Q Consensus 85 fLHPdiv~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPALd~~s~~~sh~iT~r~~~~~vHr~~~~~~~~~~C~ 164 (316)
.+. ...+|||++.|+|..++...+.++++.+...+..+.++......+. ..++.-......+.. ...... .
T Consensus 81 ~~~---~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~--~ 151 (228)
T PF13641_consen 81 ALA---AARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDR--NWLTRLQDLFFARWH--LRFRSG--R 151 (228)
T ss_dssp HHH---H---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCC--CEEEE-TT--S-EET--TTS-TT---
T ss_pred HHH---hcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCC--CHHHHHHHHHHhhhh--hhhhhh--h
Confidence 221 1459999999999999999999999999778888888665332111 111111110000000 000000 0
Q ss_pred CCCCCCCccceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceEEEccCCC
Q 021185 165 DYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPT 236 (316)
Q Consensus 165 ~~~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~pt 236 (316)
.....+.++| -+=+|+|++++.+- . ++. ..-|=|+.+...+.. .+.+|.......|.|...++
T Consensus 152 ~~~~~~~~~G----~~~~~rr~~~~~~g-~-fd~--~~~~eD~~l~~r~~~-~G~~~~~~~~~~v~~~~~~~ 214 (228)
T PF13641_consen 152 RALGVAFLSG----SGMLFRRSALEEVG-G-FDP--FILGEDFDLCLRLRA-AGWRIVYAPDALVYHEEPSS 214 (228)
T ss_dssp B----S-B------TEEEEEHHHHHHH--S---S--SSSSHHHHHHHHHHH-TT--EEEEEEEEEEE--SSS
T ss_pred cccceeeccC----cEEEEEHHHHHHhC-C-CCC--CCcccHHHHHHHHHH-CCCcEEEECCcEEEEeCCCC
Confidence 0000111221 12368999999884 2 233 444578877644432 45789999888888886444
No 10
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=85.50 E-value=0.47 Score=40.88 Aligned_cols=129 Identities=13% Similarity=-0.002 Sum_probs=72.4
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHH-hCCcccCCCcC--CCCCc--cccccceeccCcccceeeecccCCCCCCCC
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKD-EGLEISQPALD--PVKSE--VHHPITARRRNSKAHRRMYKYKGSGRCDDY 166 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~ivr~-~gLeISQPALd--~~s~~--~sh~iT~r~~~~~vHr~~~~~~~~~~C~~~ 166 (316)
+.+|||++.|+|..++...+.++++.+.+ .++.+.++... ...+. +......... . +.+.+. .+...
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~--~~~~~---- 154 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQE-L-FYGVIQ--PGRDR---- 154 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHH-H-HHHHHH--HHHhh----
Confidence 48999999999999999999999999987 77777776421 11111 0000000000 0 000000 00000
Q ss_pred CCCCCccceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceEEEccCCCC
Q 021185 167 STAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTL 237 (316)
Q Consensus 167 ~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~ptl 237 (316)
.++ .++=.+.=+|+|++++.+-. +.. ...+-|+.+..-+. ..+.+|..++...+.|...+++
T Consensus 155 ---~~~-~~~~g~~~~~r~~~~~~ig~-~~~---~~~~eD~~l~~r~~-~~g~~i~~~~~~~~~~~~~~~~ 216 (234)
T cd06421 155 ---WGA-AFCCGSGAVVRREALDEIGG-FPT---DSVTEDLATSLRLH-AKGWRSVYVPEPLAAGLAPETL 216 (234)
T ss_pred ---cCC-ceecCceeeEeHHHHHHhCC-CCc---cceeccHHHHHHHH-HcCceEEEecCccccccCCccH
Confidence 011 12223455789999998843 322 34578888864332 2346888888877776654433
No 11
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=84.28 E-value=0.77 Score=38.81 Aligned_cols=119 Identities=12% Similarity=0.028 Sum_probs=64.2
Q ss_pred cccccEEEEecccccCCCCCHHHHHHHHHHh-CCcccCCCcCCC--CCccccccceeccCcccceeeecccCCCCCCCCC
Q 021185 91 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPALDPV--KSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYS 167 (316)
Q Consensus 91 v~~YDYIflwDDDL~vd~f~i~ry~~ivr~~-gLeISQPALd~~--s~~~sh~iT~r~~~~~vHr~~~~~~~~~~C~~~~ 167 (316)
.+.+|||++.|+|..++.-.+.++++.+.+. +..|..+....- .+....... .+.. .+..+. -....|.
T Consensus 78 ~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~-~~~~~~~--- 149 (201)
T cd04195 78 HCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRR--LPTS--HDDILK-FARRRSP--- 149 (201)
T ss_pred hcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecccc--CCCC--HHHHHH-HhccCCC---
Confidence 4689999999999999988899988887654 566665543211 111111111 0100 000000 0001111
Q ss_pred CCCCccceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceEE
Q 021185 168 TAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIV 230 (316)
Q Consensus 168 ~~ppcTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~ 230 (316)
+..++=+|.|+++..+-. + ... -.+-|+.+...+- ..+.++..+....+.
T Consensus 150 --------~~~~~~~~rr~~~~~~g~-~-~~~--~~~eD~~~~~r~~-~~g~~~~~~~~~~~~ 199 (201)
T cd04195 150 --------FNHPTVMFRKSKVLAVGG-Y-QDL--PLVEDYALWARML-ANGARFANLPEILVK 199 (201)
T ss_pred --------CCChHHhhhHHHHHHcCC-c-CCC--CCchHHHHHHHHH-HcCCceecccHHHhh
Confidence 111223689999988743 2 233 5677888765542 235678877655443
No 12
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=83.81 E-value=5.9 Score=37.22 Aligned_cols=138 Identities=14% Similarity=0.004 Sum_probs=84.9
Q ss_pred ccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCcCCCCCccccccceeccCcccceeeecccCCCCCCC----CCCC
Q 021185 94 YNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDD----YSTA 169 (316)
Q Consensus 94 YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPALd~~s~~~sh~iT~r~~~~~vHr~~~~~~~~~~C~~----~~~~ 169 (316)
|+|++++++|..++...++++++.+++.+-...-|++-.+...-.+.-... ......... .....+.. ....
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~ 160 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRG-GESDGLTGG---WRASPLLEIAPDLSSY 160 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheec-ccccccccc---ceecccccccccccch
Confidence 559999999999999999999999999988887777654322112221111 110000000 00011111 0111
Q ss_pred CCccceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceEEEccCCCCC
Q 021185 170 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLG 238 (316)
Q Consensus 170 ppcTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~ptlg 238 (316)
+.+-.++..-+-+++|++++.+= . +...-=...-|.-|..-+. ..+.+|..+=+-.|.|..--+-+
T Consensus 161 ~~~~~~~~G~~~li~~~~~~~vG-~-~de~~F~y~eD~D~~~R~~-~~G~~i~~~p~a~i~H~~g~s~~ 226 (305)
T COG1216 161 LEVVASLSGACLLIRREAFEKVG-G-FDERFFIYYEDVDLCLRAR-KAGYKIYYVPDAIIYHKIGSSKG 226 (305)
T ss_pred hhhhhhcceeeeEEcHHHHHHhC-C-CCcccceeehHHHHHHHHH-HcCCeEEEeeccEEEEeccCCCC
Confidence 22333667777889999999983 2 4445566677777765553 23458999999999998744444
No 13
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.30 E-value=2.9 Score=34.43 Aligned_cols=37 Identities=8% Similarity=-0.049 Sum_probs=27.5
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHH-HHhCCcccCC
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIV-KDEGLEISQP 128 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~iv-r~~gLeISQP 128 (316)
+..|||++.|+|..++...+.+.++.+ ...+..+..+
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g 111 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYG 111 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEe
Confidence 468999999999999998888888444 3434555443
No 14
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=81.01 E-value=1.7 Score=37.28 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=26.9
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccC
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQ 127 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQ 127 (316)
+..|||++.|+|..++...+.++++.+.+.+..+..
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 112 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVI 112 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 456999999999888777777888876555555443
No 15
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=79.60 E-value=7.2 Score=34.32 Aligned_cols=176 Identities=17% Similarity=0.195 Sum_probs=92.4
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEEecccc--hhhHHHHHhhCCCCCcEEEEEEecCcccccccccccCceeEEEeecccch
Q 021185 2 RPLWSSPSKLNNQRPPMNLLAIAAGIKQ--KKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKW 79 (316)
Q Consensus 2 r~Lwg~~~~~~~~~~~k~Ll~~~VG~kq--k~~vd~~v~kf~~~nF~v~LfhYDg~vd~w~d~ews~~aiHv~a~kqtKW 79 (316)
|.-||++..-. ..+.-+.+=+|... ...++..|.+-....=||+++-+ +|.+..+. .+.+ -.-+
T Consensus 7 R~TW~~~~~~~---~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~---~D~y~nlt--~K~~-----~~~~- 72 (195)
T PF01762_consen 7 RETWGNQRNFK---GVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDF---VDSYRNLT--LKTL-----AGLK- 72 (195)
T ss_pred HHHHhcccccC---CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeec---ccccchhh--HHHH-----HHHH-
Confidence 56688766532 24456666777776 45566666653223338877654 34444331 0111 1112
Q ss_pred hhhccccCccccccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCcCCCCCccccccceeccCcccc--eeeecc
Q 021185 80 WFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAH--RRMYKY 157 (316)
Q Consensus 80 w~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPALd~~s~~~sh~iT~r~~~~~vH--r~~~~~ 157 (316)
|..+. ...++||+..|||+-| ++.++++..++.-.+.+.+.+... ........|.+.++.+ ...|
T Consensus 73 w~~~~------c~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g~--~~~~~~~~r~~~~kw~v~~~~y-- 139 (195)
T PF01762_consen 73 WASKH------CPNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYGG--CIKNGPPIRDPSSKWYVSEEEY-- 139 (195)
T ss_pred HHHhh------CCchhheeecCcEEEE---ehHHhhhhhhhcccCccccccccc--cccCCccccccccCceeeeeec--
Confidence 22332 1258999999999988 566677766666333333333321 2222233444333211 1111
Q ss_pred cCCCCCCCCCCCCCccceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcC
Q 021185 158 KGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQG 215 (316)
Q Consensus 158 ~~~~~C~~~~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g 215 (316)
+ ...-| .|..+.+-++|+++.+.+....+ ....-+-=|-.+|.|++.
T Consensus 140 ------~-~~~yP---~y~~G~~yvls~~~v~~i~~~~~-~~~~~~~eDv~iGi~~~~ 186 (195)
T PF01762_consen 140 ------P-DDYYP---PYCSGGGYVLSSDVVKRIYKASS-HTPFFPLEDVFIGILAEK 186 (195)
T ss_pred ------c-cccCC---CcCCCCeEEecHHHHHHHHHHhh-cCCCCCchHHHHHHHHHH
Confidence 0 11223 34456888999999998865432 233334455666888853
No 16
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=77.03 E-value=1.4 Score=38.93 Aligned_cols=125 Identities=20% Similarity=0.122 Sum_probs=76.4
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHH--hCCcccCCCcCCCCCccccccceeccCcccceeeecccCCCCCCCCCCC
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKD--EGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTA 169 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~ivr~--~gLeISQPALd~~s~~~sh~iT~r~~~~~vHr~~~~~~~~~~C~~~~~~ 169 (316)
+.||||++.|+|+.++.-.+.++..-+.. .||-=+-|-..+.+|..+.-..+-. .+|-.++..
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l~~~~~---~~~~~~~~a------------ 94 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRLEAAFF---NFLPGVLQA------------ 94 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHHHHHHH---hHHHHHHHH------------
Confidence 89999999999999998888888876654 4443233333333332221111111 122111110
Q ss_pred CCccceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceEEEccCC
Q 021185 170 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLP 235 (316)
Q Consensus 170 ppcTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~p 235 (316)
..-++|+=.|+=.|+|++++.+ .- ++.+.+.-.=||.++..+. .++.+|...... |+++.+|
T Consensus 95 ~~~~~~~~G~~m~~rr~~L~~~-GG-~~~l~~~ladD~~l~~~~~-~~G~~v~~~~~~-v~~~~~~ 156 (175)
T PF13506_consen 95 LGGAPFAWGGSMAFRREALEEI-GG-FEALADYLADDYALGRRLR-ARGYRVVLSPYP-VVQTSVP 156 (175)
T ss_pred hcCCCceecceeeeEHHHHHHc-cc-HHHHhhhhhHHHHHHHHHH-HCCCeEEEcchh-eeecccC
Confidence 1124677788889999999977 32 2556677788999998875 356677666533 5555544
No 17
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=77.02 E-value=2.6 Score=36.93 Aligned_cols=132 Identities=15% Similarity=0.073 Sum_probs=69.8
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCcCCCCCccccccc-eeccCcccceeeecccCCCCCCCCCCCC
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPIT-ARRRNSKAHRRMYKYKGSGRCDDYSTAP 170 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPALd~~s~~~sh~iT-~r~~~~~vHr~~~~~~~~~~C~~~~~~p 170 (316)
+.+|||++.|.|..++...++++..++...+..+.|+-+......- ..++ .+.-....|-. .+..+. ...
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~-----~~~ 156 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANY-SLLTRVQAMSLDYHFT---IEQVAR-----SST 156 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCC-chhhHhhhhhHHhhhh---HhHhhH-----hhc
Confidence 5899999999999999988888877776666666666432100000 0111 00000000000 000000 000
Q ss_pred CccceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceEEEccCCCC
Q 021185 171 PCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTL 237 (316)
Q Consensus 171 pcTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~ptl 237 (316)
.+...+=.++-+|+|+++..+-. + .. ...+=|+.+...+. .++.++..+....|.|...+|+
T Consensus 157 ~~~~~~~g~~~~~rr~~~~~vgg-~-~~--~~~~ED~~l~~rl~-~~G~~~~~~~~~~v~~~~~~~~ 218 (232)
T cd06437 157 GLFFNFNGTAGVWRKECIEDAGG-W-NH--DTLTEDLDLSYRAQ-LKGWKFVYLDDVVVPAELPASM 218 (232)
T ss_pred CCeEEeccchhhhhHHHHHHhCC-C-CC--CcchhhHHHHHHHH-HCCCeEEEeccceeeeeCCcCH
Confidence 11111112233799999998832 3 22 22467887765553 2457899998887777764444
No 18
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=76.64 E-value=6.1 Score=35.29 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=31.5
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCC
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 129 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPA 129 (316)
+..|||++.|.|...+...+.++++.+.+.+.++....
T Consensus 92 a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 129 (243)
T PLN02726 92 ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGT 129 (243)
T ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEc
Confidence 57899999999999998889999998877777665443
No 19
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=68.23 E-value=2.9 Score=36.20 Aligned_cols=41 Identities=12% Similarity=-0.021 Sum_probs=36.2
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCcCC
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDP 132 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPALd~ 132 (316)
+.+|||++.|+|..++...+.++++.+...++.+.++....
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 48999999999999999999999999988888888877644
No 20
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=67.50 E-value=4.3 Score=32.01 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=30.0
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCC
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 129 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPA 129 (316)
+..+||++.|+|..++.-.+.++++.+++.+-.+.-+.
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 56779999999999999999999999999777554444
No 21
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=66.95 E-value=3.4 Score=35.69 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=27.8
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCC
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQP 128 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQP 128 (316)
+..|||++.|.|...+...+.++++.+...+..+...
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 3469999999999888888888888765555555443
No 22
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=66.31 E-value=15 Score=31.37 Aligned_cols=85 Identities=8% Similarity=0.050 Sum_probs=49.4
Q ss_pred CCcEEEEEEecCcccccccccccCceeEEEeecccchhhhccccCccccccccEEEEecccccCCCCCHHHHHHHHHHhC
Q 021185 43 KDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 122 (316)
Q Consensus 43 ~nF~v~LfhYDg~vd~w~d~ews~~aiHv~a~kqtKWw~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ry~~ivr~~g 122 (316)
.++.|++. -|+..|+=.++.=. .-+++...++.+---...-+ -.+..|||++.|+|..++...+++++..+...+
T Consensus 27 ~~~evivv-dd~s~d~~~~~~~~-~~~~~~~~~~g~~~a~n~g~---~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 27 LPLEIIVV-DGGSTDGTVAIARS-AGVVVISSPKGRARQMNAGA---AAARGDWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred CCcEEEEE-eCCCCccHHHHHhc-CCeEEEeCCcCHHHHHHHHH---HhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 56777666 56665432221101 22344344444421111111 124589999999999999988888877777777
Q ss_pred CcccCCCcCC
Q 021185 123 LEISQPALDP 132 (316)
Q Consensus 123 LeISQPALd~ 132 (316)
..++.+....
T Consensus 102 ~~~~~~~~~~ 111 (221)
T cd02522 102 AVAGAFRLRF 111 (221)
T ss_pred cEEEEEEeee
Confidence 6666655443
No 23
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=65.69 E-value=6.9 Score=34.42 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=32.1
Q ss_pred cccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCcC
Q 021185 93 EYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALD 131 (316)
Q Consensus 93 ~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPALd 131 (316)
..|||++.|+|..++...+.++++.++..+..+.++...
T Consensus 109 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 109 TGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred CCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 469999999999999888889998887667777666554
No 24
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=63.64 E-value=14 Score=32.03 Aligned_cols=124 Identities=16% Similarity=0.039 Sum_probs=63.8
Q ss_pred cccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCcC--CCCCcc--c-cccceeccCcccceeeecccCCCCCCC
Q 021185 91 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALD--PVKSEV--H-HPITARRRNSKAHRRMYKYKGSGRCDD 165 (316)
Q Consensus 91 v~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPALd--~~s~~~--s-h~iT~r~~~~~vHr~~~~~~~~~~C~~ 165 (316)
.+..|||++.|.|..++...+.+.+..+.+....+.-+... +..... . +..++... .+....+ +
T Consensus 82 ~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~-- 150 (219)
T cd06913 82 QSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDSTERYTRWINTLTRE--QLLTQVY-------T-- 150 (219)
T ss_pred hcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccchhhHHHHHhcCHH--HHHHHHH-------h--
Confidence 35799999999999999988888887776654333222211 110000 0 00000000 0000000 0
Q ss_pred CCCCCCccceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceEEEcc
Q 021185 166 YSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 233 (316)
Q Consensus 166 ~~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~ 233 (316)
+.+ |++ -+-+-+++|++|+.+ ..+ ++..-+.+=|+.+.+.+. ..+.+|.-++...+.++.
T Consensus 151 -~~~-~~~---~~~~~~~rr~~~~~~-g~f-~~~~~~~~eD~~l~~r~~-~~g~~i~~~~~~~~~yr~ 210 (219)
T cd06913 151 -SHG-PTV---IMPTWFCSREWFSHV-GPF-DEGGKGVPEDLLFFYEHL-RKGGGVYRVDRCLLLYRY 210 (219)
T ss_pred -hcC-Ccc---ccccceeehhHHhhc-CCc-cchhccchhHHHHHHHHH-HcCCceEEEcceeeeeee
Confidence 011 111 111125789999977 333 333335567777765432 235689999886665554
No 25
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=61.91 E-value=9.8 Score=32.32 Aligned_cols=123 Identities=17% Similarity=0.136 Sum_probs=67.7
Q ss_pred EEEEecccccCCCCCHHHHHHHHHHhCCcccCCCcCCCCCccccccceeccCccc--ceeeec-ccCCCCCCCCCCCCCc
Q 021185 96 YIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKA--HRRMYK-YKGSGRCDDYSTAPPC 172 (316)
Q Consensus 96 YIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPALd~~s~~~sh~iT~r~~~~~v--Hr~~~~-~~~~~~C~~~~~~ppc 172 (316)
||.+.|+|..++.....+..+.++.-+..+.|+...... ....++.-...... |..... ....+.|
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 69 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRP--------- 69 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCC---------
Confidence 789999999999988999998888558889998876542 11222222111100 000000 0011111
Q ss_pred cceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceEEEccCC
Q 021185 173 IGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLP 235 (316)
Q Consensus 173 TgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~p 235 (316)
.++=+-.=+|++++++.+= .+ + ..--.|=|+.+..-+. ..+.+++.++...+ |+..|
T Consensus 70 -~~~~G~~~~~r~~~l~~vg-~~-~-~~~~~~ED~~l~~~l~-~~G~~~~~~~~~~~-~~~~p 126 (193)
T PF13632_consen 70 -LFLSGSGMLFRREALREVG-GF-D-DPFSIGEDMDLGFRLR-RAGYRIVYVPDAIV-YTEAP 126 (193)
T ss_pred -ccccCcceeeeHHHHHHhC-cc-c-ccccccchHHHHHHHH-HCCCEEEEecccce-eeeCC
Confidence 1122334578999999771 12 2 1223345666643321 23478999988844 54434
No 26
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=61.17 E-value=5 Score=34.96 Aligned_cols=123 Identities=15% Similarity=0.032 Sum_probs=64.3
Q ss_pred cccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCcCCCCCccccccceeccCcccceeeecccCCCCCCCCCCCCCc
Q 021185 93 EYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPPC 172 (316)
Q Consensus 93 ~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPALd~~s~~~sh~iT~r~~~~~vHr~~~~~~~~~~C~~~~~~ppc 172 (316)
.||||++.|.|..++.-.+.++++.++..+..+.++...-..+. ..+..... ..... ..+....+ +. ....+
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~-~~~~~-~~~~~~~~--~~---~~~~~ 155 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGE-ESLFKRMC-YAEYK-GFFDIGMV--SR---NERNA 155 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCC-ccHHHHHH-hHHHH-HHHHHHhc--cc---cccCc
Confidence 49999999999999999999999888766777766532211110 01111000 00000 00000000 00 00111
Q ss_pred cceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceE
Q 021185 173 IGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYI 229 (316)
Q Consensus 173 TgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V 229 (316)
.++-..+-+|+|++++.+ ..+ ++.. -+=|+.+..-+. ..+.++..++...+
T Consensus 156 -~~~~g~~~~~rr~~~~~i-Ggf-~~~~--~~eD~dl~~r~~-~~G~~~~~~~~~~~ 206 (236)
T cd06435 156 -IIQHGTMCLIRRSALDDV-GGW-DEWC--ITEDSELGLRMH-EAGYIGVYVAQSYG 206 (236)
T ss_pred -eEEecceEEEEHHHHHHh-CCC-CCcc--ccchHHHHHHHH-HCCcEEEEcchhhc
Confidence 122233347999999998 333 3322 245777765543 34578888876433
No 27
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=54.99 E-value=37 Score=28.01 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=20.6
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHH
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIV 118 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~iv 118 (316)
+.+|||++.|+|..++..-+.++++.+
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 578999999999988765566655543
No 28
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=54.86 E-value=21 Score=34.51 Aligned_cols=189 Identities=17% Similarity=0.190 Sum_probs=92.4
Q ss_pred CcEEEEEecccchhhHHHHHhhC-----------CCCCcEEEEEEecCccccccc--ccccCc------eeEEEe--ecc
Q 021185 18 MNLLAIAAGIKQKKIVDQIVRKF-----------PSKDFVVMLFHYDGVVDEWKD--LVWADR------AIHVSA--ANQ 76 (316)
Q Consensus 18 k~Ll~~~VG~kqk~~vd~~v~kf-----------~~~nF~v~LfhYDg~vd~w~d--~ews~~------aiHv~a--~kq 76 (316)
.--|++|+ ++...++..+++.- +..++.|++. -||+.|+=.+ -++.+. .+++.. .++
T Consensus 71 ~isVVIP~-yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVV-DDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~ 148 (333)
T PTZ00260 71 DLSIVIPA-YNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIV-NDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNK 148 (333)
T ss_pred EEEEEEee-CCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEE-eCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCC
Confidence 34566665 44445555544421 1225665544 6888775222 111111 245443 355
Q ss_pred cchhhhccccCccccccccEEEEecccccCCCCCHHHHHHHHHH---hCCcccCCCcCCC-CC-ccccccceecc-Cccc
Q 021185 77 TKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKD---EGLEISQPALDPV-KS-EVHHPITARRR-NSKA 150 (316)
Q Consensus 77 tKWw~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ry~~ivr~---~gLeISQPALd~~-s~-~~sh~iT~r~~-~~~v 150 (316)
.|-.-.+.=+ -.+..|||++.|.|...+..++.++++.+++ .+.++..-+.... .+ ....+--.|+- ...+
T Consensus 149 G~~~A~~~Gi---~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~~ 225 (333)
T PTZ00260 149 GKGGAVRIGM---LASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYGF 225 (333)
T ss_pred ChHHHHHHHH---HHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHHH
Confidence 6543222111 1256899999999999999999999999875 4555444332210 11 01111111111 1111
Q ss_pred ceeeecccCCCCCCCCCCCCCccceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEee
Q 021185 151 HRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDS 226 (316)
Q Consensus 151 Hr~~~~~~~~~~C~~~~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa 226 (316)
|... + -.|... ..-..+||- +|+|++++.+.. +-...+|+.|.-+-..+. ..+.+|.-|--
T Consensus 226 ~~l~-~----~~~~~~-i~D~~~Gfk-----~~~r~~~~~i~~---~~~~~~~~fd~Ell~~a~-~~g~~I~EvPv 286 (333)
T PTZ00260 226 HFIV-N----TICGTN-LKDTQCGFK-----LFTRETARIIFP---SLHLERWAFDIEIVMIAQ-KLNLPIAEVPV 286 (333)
T ss_pred HHHH-H----HHcCCC-cccCCCCeE-----EEeHHHHHHHhh---hccccCccchHHHHHHHH-HcCCCEEEEce
Confidence 1110 0 001100 001122333 789999997742 223468888888877764 23344544433
No 29
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=51.99 E-value=20 Score=35.29 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=92.1
Q ss_pred CCCCCCCCCC-CCCCCCCCcEEEEEecccchhhHHHHHhhCCCCCcEEEEEEecCcccccccccccCceeEEEeecccch
Q 021185 1 MRPLWSSPSK-LNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKW 79 (316)
Q Consensus 1 ~r~Lwg~~~~-~~~~~~~k~Ll~~~VG~kqk~~vd~~v~kf~~~nF~v~LfhYDg~vd~w~d~ews~~aiHv~a~kqtKW 79 (316)
+|+=||+++. +.......-||+++..-. .++++|.+-....-||+.-.|-.+ +..+. -+.++
T Consensus 114 iR~TW~~~~~v~~~~v~~~FLvG~~~~~~---~~~~~l~~Ea~~ygDIi~~df~Dt---y~nlt--lKtl~--------- 176 (349)
T KOG2287|consen 114 IRKTWGNENNVRGGRVRVLFLVGLPSNED---KLNKLLADEARLYGDIIQVDFEDT---YFNLT--LKTLA--------- 176 (349)
T ss_pred HHHHhcCccccCCCcEEEEEEecCCCcHH---HHHHHHHHHHHHhCCEEEEecccc---hhchH--HHHHH---------
Confidence 4677998876 211122223333333221 445666654445569998877443 22211 00111
Q ss_pred hhhccccCccccccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCcCCCCCccccc-cceeccCcccceeeeccc
Q 021185 80 WFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHP-ITARRRNSKAHRRMYKYK 158 (316)
Q Consensus 80 w~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPALd~~s~~~sh~-iT~r~~~~~vHr~~~~~~ 158 (316)
+.++.. .-...++||.=.|||+-+ +++.+++..++.. .|+=+-=.|.+... -..|.+.++
T Consensus 177 --~l~w~~-~~cp~akfi~K~DDDvfv---~~~~L~~~L~~~~----~~~~~~~~G~v~~~~~p~R~~~~K--------- 237 (349)
T KOG2287|consen 177 --ILLWGV-SKCPDAKFILKIDDDVFV---NPDNLLEYLDKLN----DPSSDLYYGRVIQNAPPIRDKTSK--------- 237 (349)
T ss_pred --HHHHHH-hcCCcceEEEeccCceEE---cHHHHHHHHhccC----CCCcceEEEeecccCCCCCCCCCC---------
Confidence 111110 002279999999999987 5566666666665 33222212333222 222332221
Q ss_pred CCCCCCCCCCCCCccce---EEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcC
Q 021185 159 GSGRCDDYSTAPPCIGW---VEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQG 215 (316)
Q Consensus 159 ~~~~C~~~~~~ppcTgF---VEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g 215 (316)
+- -+-...||+.| +=+|.-|+|+++-+.+.. ....+..-+-=|-.++-|++.
T Consensus 238 ---wy-Vp~~~y~~~~YP~Y~sG~gYvis~~~a~~l~~-~s~~~~~~~iEDV~~g~~l~~ 292 (349)
T KOG2287|consen 238 ---WY-VPESEYPCSVYPPYASGPGYVISGDAARRLLK-ASKHLKFFPIEDVFVGGCLAE 292 (349)
T ss_pred ---Cc-cCHHHCCCCCCCCcCCCceeEecHHHHHHHHH-HhcCCCccchHHHHHHHHHHH
Confidence 10 01122344443 447899999999998876 446667777777788999964
No 30
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=50.04 E-value=16 Score=30.53 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=25.2
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCccc
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEIS 126 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeIS 126 (316)
+..|||++.|+|...+.-.+.++++.+ +.+.++.
T Consensus 79 a~~d~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~v 112 (181)
T cd04187 79 ARGDAVITMDADLQDPPELIPEMLAKW-EEGYDVV 112 (181)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHH-hCCCcEE
Confidence 345999999999998877788888763 3444443
No 31
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=47.88 E-value=23 Score=33.24 Aligned_cols=126 Identities=21% Similarity=0.222 Sum_probs=56.9
Q ss_pred cccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCcCCCCCccccccceeccCcccceeeecccCCCCCCCCCCCC
Q 021185 91 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAP 170 (316)
Q Consensus 91 v~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPALd~~s~~~sh~iT~r~~~~~vHr~~~~~~~~~~C~~~~~~p 170 (316)
-..+|++++.|||.-| ++++++++...|+ -++|-.=... ...++++...+.. .+ + ...
T Consensus 84 ~~~~~Wf~~~DDDtyv---~~~~L~~~L~~~~--~~~~~yiG~~-~~~~~~~~~~~~~-~~------~---------~~~ 141 (252)
T PF02434_consen 84 NSDKDWFCFADDDTYV---NVENLRRLLSKYD--PSEPIYIGRP-SGDRPIEIIHRFN-PN------K---------SKD 141 (252)
T ss_dssp HHT-SEEEEEETTEEE----HHHHHHHHTTS---TTS--EEE-E-E----------------------------------
T ss_pred cCCceEEEEEeCCcee---cHHHHHHHHhhCC--CccCEEeeee-ccCccceeecccc-cc------c---------cCc
Confidence 3578999999999987 7778888777655 3444332111 1223332211100 00 0 001
Q ss_pred CccceEEE-ecccccHHHHHHH--hh----hhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceEEEccCCCCCCCC
Q 021185 171 PCIGWVEM-MAPVFSRAAWRCA--WY----MIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLGVTT 241 (316)
Q Consensus 171 pcTgFVEi-MaPVFSR~Awrcv--w~----miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~ptlg~~~ 241 (316)
.+-.|.-+ -.-|+||.+.+.+ |. .++.+....+.=|..+|+|++. --+|-++++ .-.|.-.|.|....
T Consensus 142 ~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~--~lgv~lt~s-~~fhs~~~~l~~~~ 216 (252)
T PF02434_consen 142 SGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIEN--LLGVPLTHS-PLFHSHLENLQDYN 216 (252)
T ss_dssp ----EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHH--TT---EEE--TT---SSS-GGG--
T ss_pred CceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHh--cCCcceeec-hhhcccCcccccCC
Confidence 11123332 2357999999877 32 2333434467889999999963 235556665 66788888876554
No 32
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=47.77 E-value=34 Score=31.88 Aligned_cols=200 Identities=13% Similarity=0.129 Sum_probs=93.7
Q ss_pred EEEEecccchh-----hHHHHH---hhC-CCCCcEEEEEEecCcccccc-cc-cc--cCcee-EEEeecccc-hhhhccc
Q 021185 21 LAIAAGIKQKK-----IVDQIV---RKF-PSKDFVVMLFHYDGVVDEWK-DL-VW--ADRAI-HVSAANQTK-WWFAKRF 85 (316)
Q Consensus 21 l~~~VG~kqk~-----~vd~~v---~kf-~~~nF~v~LfhYDg~vd~w~-d~-ew--s~~ai-Hv~a~kqtK-Ww~akRf 85 (316)
+++||..+... .+..++ +++ +..++.|++..++.. +++. .+ +. ....+ .+....+.. |-.++..
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~-~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ar 80 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSS-DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKAR 80 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCc-hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHH
Confidence 68899988842 332223 332 356788888887664 4441 11 11 11223 221111221 2222211
Q ss_pred cCccccccccEEEEecccccCCCCCHHHHHH----HHHHhCCcccCCCcCCCCCccccccceeccCcccceeeecccCCC
Q 021185 86 LHPDIVAEYNYIFLWDEDIGVENFNPRRYLS----IVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSG 161 (316)
Q Consensus 86 LHPdiv~~YDYIflwDDDL~vd~f~i~ry~~----ivr~~gLeISQPALd~~s~~~sh~iT~r~~~~~vHr~~~~~~~~~ 161 (316)
---=-.+.-|||+++|-|+-++...+.+++. +.+....-+.=|.+.-+. ..+-.+...... ..+..+. ..
T Consensus 81 N~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~-~~~~~~~~~~~~-~~~~~~~----~~ 154 (281)
T PF10111_consen 81 NIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSE-EGSEKFYSQFKN-LWDHEFL----ES 154 (281)
T ss_pred HHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeeccc-hhhHHHhhcchh-cchHHHH----HH
Confidence 1122236899999999999999988998888 222221222223321111 111111111100 0000000 00
Q ss_pred CCCCCCCCCCccceEEEecccccHHHHHHHhhhhcCCCcccchh---hHHhhhhhcCCCCCcEEEEeeceEEEcc
Q 021185 162 RCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGL---DIQLGYCAQGDRTKNVGVVDSEYIVHLG 233 (316)
Q Consensus 162 ~C~~~~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGL---D~~w~~c~~g~~~~kiGVVDa~~V~H~~ 233 (316)
.+....+......++- -+=+++|+.+..+ .- +|+.-.|||. ||.+.-.. .+.++-..+...+-|..
T Consensus 155 ~~~~~~~~~~~~~~~s-~~~~i~r~~f~~i-GG-fDE~f~G~G~ED~D~~~RL~~---~~~~~~~~~~~~~~~~~ 223 (281)
T PF10111_consen 155 FISGKNSLWEFIAFAS-SCFLINREDFLEI-GG-FDERFRGWGYEDIDFGYRLKK---AGYKFKRSPDYLVYHSH 223 (281)
T ss_pred Hhhccccccccccccc-eEEEEEHHHHHHh-CC-CCccccCCCcchHHHHHHHHH---cCCcEecChHHhccccc
Confidence 0000000001111111 2336889999998 43 4888899984 55554332 23566677777776654
No 33
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=46.97 E-value=16 Score=29.79 Aligned_cols=52 Identities=25% Similarity=0.455 Sum_probs=38.8
Q ss_pred ccccCccccccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCC--cCCCCCcccc
Q 021185 83 KRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA--LDPVKSEVHH 139 (316)
Q Consensus 83 kRfLHPdiv~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPA--Ld~~s~~~sh 139 (316)
.-|+||.+.++--.|||+-|++|+.... ++-.++.|+.||.-+ |+. +|.+.+
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~~GvS~~e----i~~~~~~~v~~Sd~gA~lde-kgkv~~ 87 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDPLGVSRQE----IEETRKVGVPISDEGATLDE-KGKVVW 87 (95)
T ss_pred hccCCHhHcCCCCeEEeecCCCCCCHHH----HHHhhcCCeEEECCCeEEcc-CCCEEE
Confidence 4489999999999999999999997644 455677778887655 343 344443
No 34
>PRK11204 N-glycosyltransferase; Provisional
Probab=46.81 E-value=26 Score=34.02 Aligned_cols=201 Identities=15% Similarity=0.088 Sum_probs=97.1
Q ss_pred CCCcEEEEEecccchhhHHHHHhhCC---CCCcEEEEEEecCccccccc-c-cccCc--eeEEEe--ecccchhhhcccc
Q 021185 16 PPMNLLAIAAGIKQKKIVDQIVRKFP---SKDFVVMLFHYDGVVDEWKD-L-VWADR--AIHVSA--ANQTKWWFAKRFL 86 (316)
Q Consensus 16 ~~k~Ll~~~VG~kqk~~vd~~v~kf~---~~nF~v~LfhYDg~vd~w~d-~-ews~~--aiHv~a--~kqtKWw~akRfL 86 (316)
.++.-|.+|+=... ..+.+.++... -.+++|++.. ||+.|+=.+ + +...+ -+++.. .+.+|=.-.+.-+
T Consensus 53 ~p~vsViIp~yne~-~~i~~~l~sl~~q~yp~~eiiVvd-D~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g~ 130 (420)
T PRK11204 53 YPGVSILVPCYNEG-ENVEETISHLLALRYPNYEVIAIN-DGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALNTGA 130 (420)
T ss_pred CCCEEEEEecCCCH-HHHHHHHHHHHhCCCCCeEEEEEE-CCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHHH
Confidence 45677777775543 44544443221 2368887765 566554222 1 11111 133332 3444422111111
Q ss_pred CccccccccEEEEecccccCCCCCHHHHHHHHH-HhCCcccC--CCcCCCCCccccccceeccCc-ccceeeecccCCCC
Q 021185 87 HPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVK-DEGLEISQ--PALDPVKSEVHHPITARRRNS-KAHRRMYKYKGSGR 162 (316)
Q Consensus 87 HPdiv~~YDYIflwDDDL~vd~f~i~ry~~ivr-~~gLeISQ--PALd~~s~~~sh~iT~r~~~~-~vHr~~~~~~~~~~ 162 (316)
-.+.||||++.|.|..++...+.++++.++ ..+..+.| |......+...+..+..-... ...++.. ...+
T Consensus 131 ---~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~- 204 (420)
T PRK11204 131 ---AAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQ--RVYG- 204 (420)
T ss_pred ---HHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHHHHHHHhhhHHHHHH--HHhC-
Confidence 126899999999999999988888888885 33444444 222221111111100000000 0000000 0000
Q ss_pred CCCCCCCCCccceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceEEEccCCCCC
Q 021185 163 CDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLG 238 (316)
Q Consensus 163 C~~~~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~~ptlg 238 (316)
....+-.++=+|+|+++..+ ..+..+.. +=|+.+...+. ..+.++..+....+.|...+|+.
T Consensus 205 ---------~~~~~~G~~~~~rr~~l~~v-gg~~~~~~---~ED~~l~~rl~-~~G~~i~~~p~~~~~~~~p~t~~ 266 (420)
T PRK11204 205 ---------RVFTVSGVITAFRKSALHEV-GYWSTDMI---TEDIDISWKLQ-LRGWDIRYEPRALCWILMPETLK 266 (420)
T ss_pred ---------CceEecceeeeeeHHHHHHh-CCCCCCcc---cchHHHHHHHH-HcCCeEEeccccEEEeECcccHH
Confidence 01122234457899999887 22222222 34666654443 23568888887777776655543
No 35
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=45.04 E-value=19 Score=27.32 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=19.2
Q ss_pred cccEEEEecccccCCCCCHHHH
Q 021185 93 EYNYIFLWDEDIGVENFNPRRY 114 (316)
Q Consensus 93 ~YDYIflwDDDL~vd~f~i~ry 114 (316)
.+||+++.|+|..++...+.++
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred cCCEEEEECCCCccCccHHHHH
Confidence 7999999999999888777776
No 36
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=44.66 E-value=13 Score=28.97 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=27.0
Q ss_pred cccEEEEecccccCCCCCHHHH-HHHHHHhCCcccCCCc
Q 021185 93 EYNYIFLWDEDIGVENFNPRRY-LSIVKDEGLEISQPAL 130 (316)
Q Consensus 93 ~YDYIflwDDDL~vd~f~i~ry-~~ivr~~gLeISQPAL 130 (316)
.+|||++.|+|..++...+.++ ..+.+..+..+..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 116 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRV 116 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeE
Confidence 8999999999999987777777 4444444455554444
No 37
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=42.43 E-value=21 Score=30.03 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=29.7
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHH-HHhCCcccCC
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIV-KDEGLEISQP 128 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~iv-r~~gLeISQP 128 (316)
+.+|||++.|+|..++...+.++++.+ +..+..+..+
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 568999999999999888889999888 5555666544
No 38
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=41.06 E-value=22 Score=30.26 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=29.3
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCC
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 129 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPA 129 (316)
+.+|||++.|+|..++.-.++++++.+.+.+-.+.+.+
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 118 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGP 118 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeee
Confidence 56899999999999998888888887666554444433
No 39
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=37.30 E-value=32 Score=30.49 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=29.8
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHh--CCcccCCC
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE--GLEISQPA 129 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~ivr~~--gLeISQPA 129 (316)
+.+|||++.|.|..++.-.+.+.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 678999999999999999888888877643 44444544
No 40
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=36.93 E-value=27 Score=29.29 Aligned_cols=47 Identities=21% Similarity=0.114 Sum_probs=31.9
Q ss_pred cccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceEEEcc
Q 021185 182 VFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 233 (316)
Q Consensus 182 VFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~~ 233 (316)
+|+|++++.+-. + ... ..|+-|+.+..++.. ..++.+++...+.|+.
T Consensus 158 ~~r~~~~~~~~~-~-~~~-~~~~~D~~~~~~~~~--~~~~~~~~~~~~~~r~ 204 (214)
T cd04196 158 AFNRELLELALP-F-PDA-DVIMHDWWLALLASA--FGKVVFLDEPLILYRQ 204 (214)
T ss_pred eEEHHHHHhhcc-c-ccc-ccccchHHHHHHHHH--cCceEEcchhHHHHhc
Confidence 799999998832 2 222 267778776666542 4579999888776665
No 41
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=34.56 E-value=38 Score=33.07 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=29.8
Q ss_pred ccEEEEecccccCCCCCHHHHHHHHHHhCCccc
Q 021185 94 YNYIFLWDEDIGVENFNPRRYLSIVKDEGLEIS 126 (316)
Q Consensus 94 YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeIS 126 (316)
+|||++.|.|..++...+.++++.+++.+..+.
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 999999999999999999999999988776654
No 42
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=33.58 E-value=80 Score=29.71 Aligned_cols=95 Identities=12% Similarity=0.209 Sum_probs=52.0
Q ss_pred cccchhhHHHHHhhCCC-CCcEEEEEEecCcccccccccccCceeEEEeecccchhhhccccCccccccccEEEEecccc
Q 021185 26 GIKQKKIVDQIVRKFPS-KDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDI 104 (316)
Q Consensus 26 G~kqk~~vd~~v~kf~~-~nF~v~LfhYDg~vd~w~d~ews~~aiHv~a~kqtKWw~akRfLHPdiv~~YDYIflwDDDL 104 (316)
..+-.....++|+.... ..-.=+++...+...--....|....+-|....+++==.-.||+..+. -.=|.||..|||+
T Consensus 8 ~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~~-i~T~AVl~~DDDv 86 (247)
T PF09258_consen 8 SYKRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDPE-IETDAVLSLDDDV 86 (247)
T ss_dssp -SS-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS--TT---SSEEEEEETTE
T ss_pred cccchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCcCccc-cCcceEEEecCCc
Confidence 55555666666665432 223323333333222222355666556665566665556677765333 3579999999999
Q ss_pred cCCCCCHHHHHHHHHHh
Q 021185 105 GVENFNPRRYLSIVKDE 121 (316)
Q Consensus 105 ~vd~f~i~ry~~ivr~~ 121 (316)
.++..+++.=|+.-+++
T Consensus 87 ~~~~~~l~faF~~W~~~ 103 (247)
T PF09258_consen 87 MLSCDELEFAFQVWREF 103 (247)
T ss_dssp EE-HHHHHHHHHHHCCS
T ss_pred ccCHHHHHHHHHHHHhC
Confidence 99999999989888754
No 43
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=33.06 E-value=21 Score=27.78 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=19.1
Q ss_pred ccccccccEEEEecccccCCCCCHHHHHHHHHHhC
Q 021185 88 PDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 122 (316)
Q Consensus 88 Pdiv~~YDYIflwDDDL~vd~f~i~ry~~ivr~~g 122 (316)
..+...|||||++|.+ +++-.|+.|
T Consensus 13 ~~i~~~~~~iFt~D~~----------~~~~~~~~G 37 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS----------FVEEYRNLG 37 (79)
T ss_pred hhhCCCCCEEEEECHH----------HHHHHHHcC
Confidence 5788899999999874 455566666
No 44
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=32.01 E-value=31 Score=30.54 Aligned_cols=55 Identities=20% Similarity=0.497 Sum_probs=37.1
Q ss_pred hhhhccccCccccccccEEEEeccc-------ccCCCCCH-----------HHHHHHHHHhCCcccCCCcCCCCCccccc
Q 021185 79 WWFAKRFLHPDIVAEYNYIFLWDED-------IGVENFNP-----------RRYLSIVKDEGLEISQPALDPVKSEVHHP 140 (316)
Q Consensus 79 Ww~akRfLHPdiv~~YDYIflwDDD-------L~vd~f~i-----------~ry~~ivr~~gLeISQPALd~~s~~~sh~ 140 (316)
=|+++||+-|+ =+++|++++. .+-..||+ -.|=-++++||| ..|||..= +.|-|.
T Consensus 15 ~WLIrRFIDp~----A~F~fv~~~~v~~~~~~~~A~pFD~~ga~~tH~g~~cTFe~ll~~f~L--~dpaL~~l-a~IV~~ 87 (135)
T PF09828_consen 15 PWLIRRFIDPE----AEFLFVPPPEVLDVACPFDAIPFDIPGAEFTHRGDRCTFEVLLASFGL--DDPALARL-AAIVRG 87 (135)
T ss_pred HHHHHHhcCCC----ceEEEeCchhhccccccCCCCcccCCCCeeeeeCCcccHHHHHHHhCC--CCHHHHHH-HHHHHH
Confidence 38999999885 3677888766 12223333 246678899999 99999863 345444
No 45
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=31.99 E-value=1.6e+02 Score=29.01 Aligned_cols=102 Identities=18% Similarity=0.270 Sum_probs=64.3
Q ss_pred cEEEEEecccchhhHHHHHh--hCCCCCcEEEEEEecCccccccc---ccc-------cCceeEEEeeccc---chhh--
Q 021185 19 NLLAIAAGIKQKKIVDQIVR--KFPSKDFVVMLFHYDGVVDEWKD---LVW-------ADRAIHVSAANQT---KWWF-- 81 (316)
Q Consensus 19 ~Ll~~~VG~kqk~~vd~~v~--kf~~~nF~v~LfhYDg~vd~w~d---~ew-------s~~aiHv~a~kqt---KWw~-- 81 (316)
.|.++++|..-....-.+.+ .+....+.+.+|.-| ...+|.. =+| ....+|-.....+ .|-.
T Consensus 2 ~~~vv~~g~~~~~~~~~lkSil~~n~~~l~Fhi~~d~-~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~ws~l~ 80 (304)
T cd06430 2 HLAVVACGERLEETLTMLKSAIVFSQKPLRFHIFAED-QLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEWKKLF 80 (304)
T ss_pred EEEEEEcCCcHHHHHHHHHHHHHhCCCCEEEEEEECC-ccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhhhhcc
Confidence 47788999974333333333 333467888888844 3333331 122 2334444433323 3422
Q ss_pred ----hccccCccccccccEEEEecccccCCCCCHHHHHHHHHHhC
Q 021185 82 ----AKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 122 (316)
Q Consensus 82 ----akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ry~~ivr~~g 122 (316)
..|++=|+++.++|-|.-.|-|+-+ .-++..++++.+.++
T Consensus 81 ~~~~y~RL~ip~lLp~~dkvLYLD~Dii~-~~dI~eL~~~~~df~ 124 (304)
T cd06430 81 KPCAAQRLFLPSLLPDVDSLLYVDTDILF-LRPVEEIWSFLKKFN 124 (304)
T ss_pred cHHHHHHHHHHHHhhhhceEEEeccceee-cCCHHHHHHHHhhcC
Confidence 3568889999999999999999988 568999999866554
No 46
>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]
Probab=31.80 E-value=60 Score=32.56 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=63.2
Q ss_pred CCcEEEEEecccchhhHHHHHhhCCCCCcEEEE-EEecCcccccccccccCceeEEEeecccchhhhccccCcccc
Q 021185 17 PMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVML-FHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIV 91 (316)
Q Consensus 17 ~k~Ll~~~VG~kqk~~vd~~v~kf~~~nF~v~L-fhYDg~vd~w~d~ews~~aiHv~a~kqtKWw~akRfLHPdiv 91 (316)
++.|++-.+|.--.+.++.++.++++.+|..++ +-|-+....=....||-+.-.+....-.-|-+.+-|+|++|.
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id 82 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEID 82 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchh
Confidence 457889999999999999999999988887766 677777666667889999999988888889999999998653
No 47
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=26.79 E-value=87 Score=34.23 Aligned_cols=97 Identities=21% Similarity=0.302 Sum_probs=70.5
Q ss_pred ecccchhhHHHHHhhCCCCCcEEEEEEecCc-------------------c-------cccccccccCceeEEEeecccc
Q 021185 25 AGIKQKKIVDQIVRKFPSKDFVVMLFHYDGV-------------------V-------DEWKDLVWADRAIHVSAANQTK 78 (316)
Q Consensus 25 VG~kqk~~vd~~v~kf~~~nF~v~LfhYDg~-------------------v-------d~w~d~ews~~aiHv~a~kqtK 78 (316)
+|..-|..-.++=-..+.++|+||++-|.-. | +--+|+-|-+-.|-|....-.|
T Consensus 631 ~gGsGkEF~~aLGGN~pREQFTvVmLTYERe~VLm~sLeRL~gLPYLnKvvVVWNspk~P~ddl~WPdigvPv~viR~~~ 710 (907)
T KOG2264|consen 631 AGGSGKEFSKALGGNRPREQFTVVMLTYEREAVLMGSLERLHGLPYLNKVVVVWNSPKDPPDDLTWPDIGVPVEVIRVAE 710 (907)
T ss_pred CCCchHHHHHHhcCCCccceEEEEEEEehHHHHHHHHHHHhhCCcccceEEEEeCCCCCChhcccCcCCCCceEEEEccc
Confidence 4556666666666677789999999988532 2 2235788888777777776666
Q ss_pred hhhhccccCccccccccEEEEecccccCCCCCHHHHHHHHHHhC
Q 021185 79 WWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 122 (316)
Q Consensus 79 Ww~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ry~~ivr~~g 122 (316)
=-.-+|||-.|.++ -+.|.=.|||..+-|..|-==|..-|+..
T Consensus 711 NsLNNRFlPwd~IE-TEAvLS~DDDahLrhdEI~fgFRVWRE~R 753 (907)
T KOG2264|consen 711 NSLNNRFLPWDRIE-TEAVLSLDDDAHLRHDEIIFGFRVWRENR 753 (907)
T ss_pred ccccccccCchhhh-heeeeecccchhhhhhheeeeeehhhhcc
Confidence 66789999888874 58999999999998877755455555443
No 48
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=26.48 E-value=1.2e+02 Score=31.60 Aligned_cols=114 Identities=14% Similarity=0.106 Sum_probs=65.6
Q ss_pred cccccEEEEecccccCCCCCHHHHHHHHHH---hCCcccCCCcCCCCCccccccceecc-CcccceeeecccCCCCCCCC
Q 021185 91 VAEYNYIFLWDEDIGVENFNPRRYLSIVKD---EGLEISQPALDPVKSEVHHPITARRR-NSKAHRRMYKYKGSGRCDDY 166 (316)
Q Consensus 91 v~~YDYIflwDDDL~vd~f~i~ry~~ivr~---~gLeISQPALd~~s~~~sh~iT~r~~-~~~vHr~~~~~~~~~~C~~~ 166 (316)
.+.||||++.|+||.+-..++-.+-.-|.+ .+|-=--|-.--..| -.+|+-+. -...|-|.|-
T Consensus 168 ~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~dr~G---f~atle~~~fgTsh~r~yl---------- 234 (431)
T KOG2547|consen 168 AAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCKDRQG---FDATLEQVYFGTSHPRIYL---------- 234 (431)
T ss_pred HhcCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCceeecccc---chhhhhheeeccCCceEEE----------
Confidence 578999999999999999999888877763 333222232211112 11222221 1123444431
Q ss_pred CCCCCccceEE--EecccccHHHHHHHhhhhcCCCcccchh--hHHhhhhhcCCCCCcEEEE
Q 021185 167 STAPPCIGWVE--MMAPVFSRAAWRCAWYMIQNDLIHAWGL--DIQLGYCAQGDRTKNVGVV 224 (316)
Q Consensus 167 ~~~ppcTgFVE--iMaPVFSR~Awrcvw~miqNdlvhGWGL--D~~w~~c~~g~~~~kiGVV 224 (316)
.-+|++|+= .|--...++|+...=.+. ..||=| |+-..+|.- .|+-|.+++
T Consensus 235 --~~n~~~~~c~tgms~~mrK~~ld~~ggi~----~f~~yLaedyFaaksll-SRG~ksais 289 (431)
T KOG2547|consen 235 --SGNVLGFNCSTGMSSMMRKEALDECGGIS----AFGGYLAEDYFAAKSLL-SRGWKSAIS 289 (431)
T ss_pred --ccccccccccccHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHH-hhhhhhhhc
Confidence 225677765 577777788887442322 134433 777788874 566666654
No 49
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=25.68 E-value=94 Score=28.01 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=26.0
Q ss_pred cccccEEEEecccccCCCCCHHHHHHHHHH
Q 021185 91 VAEYNYIFLWDEDIGVENFNPRRYLSIVKD 120 (316)
Q Consensus 91 v~~YDYIflwDDDL~vd~f~i~ry~~ivr~ 120 (316)
.+.+|||++.|.|..++.--+.++++.+.+
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~ 100 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDK 100 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHh
Confidence 478999999999999998888888877753
No 50
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=25.43 E-value=36 Score=33.94 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=32.7
Q ss_pred CCCCCCCCCccceEEEecccccHHHHHHHhhhhcCCCcccc
Q 021185 163 CDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAW 203 (316)
Q Consensus 163 C~~~~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNdlvhGW 203 (316)
|.-+..+.--|.|||-+-|||++.+..-+--..+-.++-||
T Consensus 80 ~am~~sg~~is~~~e~~d~V~q~q~~~~l~~tGrp~~VVGW 120 (316)
T KOG1555|consen 80 FAMPQSGTGISKFVEAVDPVFQTQMMDLLKQTGRPELVVGW 120 (316)
T ss_pred eccccccceecccchhccHHHHHHHHHHHHhcCCcceEEee
Confidence 34344555678899999999999999988777777788888
No 51
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=25.24 E-value=1.3e+02 Score=27.38 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=53.1
Q ss_pred CCcEEEEEecccchhhHHHHHhhCCCCCcEEEEEEecCcccccccccccCceeEEEeecccchhhhccccCccccccccE
Q 021185 17 PMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNY 96 (316)
Q Consensus 17 ~k~Ll~~~VG~kqk~~vd~~v~kf~~~nF~v~LfhYDg~vd~w~d~ews~~aiHv~a~kqtKWw~akRfLHPdiv~~YDY 96 (316)
+-.+.+++-|++.. +.+.+-+-....++.+-+..++- .++..+++.. -| -++.- ..||+=|+++..||-
T Consensus 30 ~~~~~il~~~is~~-~~~~L~~~~~~~~~~i~~~~~~~--~~~~~~~~~~--~~-----~~~~~-y~RL~i~~llp~~~k 98 (246)
T cd00505 30 PLRFHVLTNPLSDT-FKAALDNLRKLYNFNYELIPVDI--LDSVDSEHLK--RP-----IKIVT-LTKLHLPNLVPDYDK 98 (246)
T ss_pred CeEEEEEEccccHH-HHHHHHHHHhccCceEEEEeccc--cCcchhhhhc--Cc-----cccce-eHHHHHHHHhhccCe
Confidence 44577777776542 33333221112466776666642 3444333320 01 12222 456777999888999
Q ss_pred EEEecccccCCCCCHHHHHHH
Q 021185 97 IFLWDEDIGVENFNPRRYLSI 117 (316)
Q Consensus 97 IflwDDDL~vd~f~i~ry~~i 117 (316)
|...|.|+.+- -+++.++++
T Consensus 99 vlYLD~D~iv~-~di~~L~~~ 118 (246)
T cd00505 99 ILYVDADILVL-TDIDELWDT 118 (246)
T ss_pred EEEEcCCeeec-cCHHHHhhc
Confidence 99999999986 688888865
No 52
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=24.89 E-value=2.3e+02 Score=31.91 Aligned_cols=109 Identities=15% Similarity=0.181 Sum_probs=66.2
Q ss_pred CCCcEEEEEecccchhhHHHHHh-----hCCCCCcEEEEEEecCcccccccccccCceeEEEeecc---cchhhhccccC
Q 021185 16 PPMNLLAIAAGIKQKKIVDQIVR-----KFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQ---TKWWFAKRFLH 87 (316)
Q Consensus 16 ~~k~Ll~~~VG~kqk~~vd~~v~-----kf~~~nF~v~LfhYDg~vd~w~d~ews~~aiHv~a~kq---tKWw~akRfLH 87 (316)
.++.=|.+|+=......+...+. .++.++|.|++.. ||+.|+..++-= +-.+++..+.. .|=--++..+.
T Consensus 259 ~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVD-DgS~D~t~~la~-~~~v~yI~R~~n~~gKAGnLN~aL~ 336 (852)
T PRK11498 259 WPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILD-DGGREEFRQFAQ-EVGVKYIARPTHEHAKAGNINNALK 336 (852)
T ss_pred CCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEe-CCCChHHHHHHH-HCCcEEEEeCCCCcchHHHHHHHHH
Confidence 35677778874433344433332 5666789999886 898888765431 12345444322 22111121221
Q ss_pred ccccccccEEEEecccccCCCCCHHHHHHHH-HHhCCcccCCC
Q 021185 88 PDIVAEYNYIFLWDEDIGVENFNPRRYLSIV-KDEGLEISQPA 129 (316)
Q Consensus 88 Pdiv~~YDYIflwDDDL~vd~f~i~ry~~iv-r~~gLeISQPA 129 (316)
.+.+|||.+.|-|-.++...+.+.+..+ +.-.+.+.|..
T Consensus 337 ---~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp 376 (852)
T PRK11498 337 ---YAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTP 376 (852)
T ss_pred ---hCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcc
Confidence 2579999999999998877777777664 45567777753
No 53
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=24.59 E-value=74 Score=26.84 Aligned_cols=29 Identities=10% Similarity=0.066 Sum_probs=25.3
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHH
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIVKD 120 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~ivr~ 120 (316)
+.||||++.|.|..++...+.++.+.+.+
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 46999999999999998888888887754
No 54
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=24.55 E-value=3.2e+02 Score=26.91 Aligned_cols=95 Identities=19% Similarity=0.313 Sum_probs=57.0
Q ss_pred CCCcEEEEEecccchhhHHHHHh---hCCCCCcEEEEEEecCccccccccccc----CceeEEEeecccchh-h--hccc
Q 021185 16 PPMNLLAIAAGIKQKKIVDQIVR---KFPSKDFVVMLFHYDGVVDEWKDLVWA----DRAIHVSAANQTKWW-F--AKRF 85 (316)
Q Consensus 16 ~~k~Ll~~~VG~kqk~~vd~~v~---kf~~~nF~v~LfhYDg~vd~w~d~ews----~~aiHv~a~kqtKWw-~--akRf 85 (316)
..--|+.+++|.=.. ..+..++ |+...++.+.-|-+= |.-..++.- .+-+.|...++.+.| . +.||
T Consensus 34 ~tIgl~vfatGkY~~-f~~~F~~SAEk~Fm~g~~v~YyVFT---D~~~~~p~v~lg~~r~~~V~~v~~~~~W~~~sl~Rm 109 (271)
T cd02515 34 ITIGLTVFAVGKYTE-FLERFLESAEKHFMVGYRVIYYIFT---DKPAAVPEVELGPGRRLTVLKIAEESRWQDISMRRM 109 (271)
T ss_pred CEEEEEEEEeccHHH-HHHHHHHHHHHhccCCCeeEEEEEe---CCcccCcccccCCCceeEEEEeccccCCcHHHHHHH
Confidence 344689999997443 3333332 444688888777663 333334432 255666666666766 2 2333
Q ss_pred ---c-C--ccccccccEEEEecccccC-CCCCHHHH
Q 021185 86 ---L-H--PDIVAEYNYIFLWDEDIGV-ENFNPRRY 114 (316)
Q Consensus 86 ---L-H--Pdiv~~YDYIflwDDDL~v-d~f~i~ry 114 (316)
+ | -.+..++||+|..|=|... +++..+-+
T Consensus 110 ~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig~E~L 145 (271)
T cd02515 110 KTLADHIADRIGHEVDYLFCMDVDMVFQGPFGVETL 145 (271)
T ss_pred HHHHHHHHHhhcccCCEEEEeeCCceEeecCCHHHh
Confidence 2 2 3467899999999977654 45555554
No 55
>PLN02867 Probable galacturonosyltransferase
Probab=23.98 E-value=32 Score=36.52 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=30.1
Q ss_pred ccccCccccccccEEEEecccccCCCCCHHHHHHH
Q 021185 83 KRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSI 117 (316)
Q Consensus 83 kRfLHPdiv~~YDYIflwDDDL~vd~f~i~ry~~i 117 (316)
.||+=||++.++|-|...|+|+-|.. |+..++++
T Consensus 334 lRflIPeLLP~LdKVLYLD~DVVVqg-DLseLwdi 367 (535)
T PLN02867 334 LRIYIPELFPDLNKIVFLDDDVVVQH-DLSSLWEL 367 (535)
T ss_pred HHHHHHHHhhccCeEEEecCCEEEcC-chHHHHhC
Confidence 46777999999999999999999987 88888876
No 56
>TIGR02165 cas_GSU0054 CRISPR-associated protein, GSU0054 family. This model represents a rare CRISPR-associated protein. So far, members are found in Geobacter sulfurreducens and in two unpublished genomes: Gemmata obscuriglobus and Actinomyces naeslundii.CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.
Probab=23.62 E-value=13 Score=37.74 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.9
Q ss_pred hhhhcCCCcccchhhHHhhh
Q 021185 192 WYMIQNDLIHAWGLDIQLGY 211 (316)
Q Consensus 192 w~miqNdlvhGWGLD~~w~~ 211 (316)
-.|-||-..-|||+|++.+.
T Consensus 88 v~~A~~i~hLGWGiDmv~G~ 107 (465)
T TIGR02165 88 VEAAQNINHLGWGIDMVAGD 107 (465)
T ss_pred HHHHhhccccccchhhcccc
Confidence 36789999999999999864
No 57
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=23.56 E-value=55 Score=30.60 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=30.4
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHH-HhCCcccC
Q 021185 92 AEYNYIFLWDEDIGVENFNPRRYLSIVK-DEGLEISQ 127 (316)
Q Consensus 92 ~~YDYIflwDDDL~vd~f~i~ry~~ivr-~~gLeISQ 127 (316)
+.||||.+.|-|..++...+.+.+..+. .-++-+.|
T Consensus 94 ~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq 130 (254)
T cd04191 94 SRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQ 130 (254)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 6899999999999999999999999885 44555555
No 58
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=22.10 E-value=63 Score=31.41 Aligned_cols=127 Identities=14% Similarity=0.029 Sum_probs=65.6
Q ss_pred cccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCcC--CCCCccccccceeccCcccceeeecccCCCCCCCCCC
Q 021185 91 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALD--PVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYST 168 (316)
Q Consensus 91 v~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPALd--~~s~~~sh~iT~r~~~~~vHr~~~~~~~~~~C~~~~~ 168 (316)
.+.+|||.+.|.|..++..-+.+....++..+..+.+.... +..+....-.+... ...+.....-.. ..
T Consensus 124 ~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~--------~~ 194 (373)
T TIGR03472 124 HARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPVPGFWSRLGAMGI-NHNFLPSVMVAR--------AL 194 (373)
T ss_pred hccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCCCCHHHHHHHHHh-hhhhhHHHHHHH--------hc
Confidence 36899999999999998888888888776656655443221 11111110000000 000000000000 00
Q ss_pred CCCccceEEEecccccHHHHHHHhhhhcCCCcccchhhHHhhhhhcCCCCCcEEEEeeceEEEc
Q 021185 169 APPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHL 232 (316)
Q Consensus 169 ~ppcTgFVEiMaPVFSR~Awrcvw~miqNdlvhGWGLD~~w~~c~~g~~~~kiGVVDa~~V~H~ 232 (316)
+. ..|+-...=+|+|+++..+ .-+ +...+.-+=|+.+++-+. ..+.+|.+.+.. |.|+
T Consensus 195 ~~--~~~~~G~~~a~RR~~l~~i-GGf-~~~~~~~~ED~~l~~~i~-~~G~~v~~~~~~-v~~~ 252 (373)
T TIGR03472 195 GR--ARFCFGATMALRRATLEAI-GGL-AALAHHLADDYWLGELVR-ALGLRVVLAPVV-VDTD 252 (373)
T ss_pred cC--CccccChhhheeHHHHHHc-CCh-HHhcccchHHHHHHHHHH-HcCCeEEecchh-hhcC
Confidence 00 0122122336899999987 323 333344567898887765 356788877654 4443
No 59
>PRK10073 putative glycosyl transferase; Provisional
Probab=22.02 E-value=82 Score=30.35 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=60.3
Q ss_pred CCCcEEEEEecccchhhHHHHHhhC---CCCCcEEEEEEecCccccccc-c-cccC--ceeEEEe-ecccchhhhccccC
Q 021185 16 PPMNLLAIAAGIKQKKIVDQIVRKF---PSKDFVVMLFHYDGVVDEWKD-L-VWAD--RAIHVSA-ANQTKWWFAKRFLH 87 (316)
Q Consensus 16 ~~k~Ll~~~VG~kqk~~vd~~v~kf---~~~nF~v~LfhYDg~vd~w~d-~-ews~--~aiHv~a-~kqtKWw~akRfLH 87 (316)
.++.-|++||=... ..+..++.-. ...+|.|++.. ||++|+=.+ + ++.+ ..|++.. .++..= +-|. .
T Consensus 5 ~p~vSVIIP~yN~~-~~L~~~l~Sl~~Qt~~~~EIIiVd-DgStD~t~~i~~~~~~~~~~i~vi~~~n~G~~--~arN-~ 79 (328)
T PRK10073 5 TPKLSIIIPLYNAG-KDFRAFMESLIAQTWTALEIIIVN-DGSTDNSVEIAKHYAENYPHVRLLHQANAGVS--VARN-T 79 (328)
T ss_pred CCeEEEEEeccCCH-HHHHHHHHHHHhCCCCCeEEEEEe-CCCCccHHHHHHHHHhhCCCEEEEECCCCChH--HHHH-H
Confidence 35567788874433 4444333322 12578877775 888764211 1 1211 2233322 122210 0010 0
Q ss_pred ccccccccEEEEecccccCCCCCHHHHHHHHHHhCCcccC
Q 021185 88 PDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQ 127 (316)
Q Consensus 88 Pdiv~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQ 127 (316)
.=-.+.-|||++.|.|-.++...++++++.+++.++++..
T Consensus 80 gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 80 GLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred HHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 1112567999999999989888889999998888877754
No 60
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=21.84 E-value=37 Score=33.77 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=23.0
Q ss_pred ecccchhhHHHHHhhCCCCCcEEEE-EEecC
Q 021185 25 AGIKQKKIVDQIVRKFPSKDFVVML-FHYDG 54 (316)
Q Consensus 25 VG~kqk~~vd~~v~kf~~~nF~v~L-fhYDg 54 (316)
-|....+.+-++.++--...+.||| |||..
T Consensus 52 ~g~~~~~~~~~~akrak~~Gm~vlldfHYSD 82 (332)
T PF07745_consen 52 GGYNDLEDVIALAKRAKAAGMKVLLDFHYSD 82 (332)
T ss_dssp TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSS
T ss_pred cccCCHHHHHHHHHHHHHCCCeEEEeecccC
Confidence 6788888888888876678899999 99954
No 61
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=21.33 E-value=63 Score=26.58 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=27.6
Q ss_pred cEEEEecccccCCCCCHHHHHHHHHHhCCcccCCC
Q 021185 95 NYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 129 (316)
Q Consensus 95 DYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQPA 129 (316)
|||.+.|+|..++..-++++++.+.+.+..+....
T Consensus 81 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 81 DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 99999999999888888888887666666554443
No 62
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=21.30 E-value=70 Score=30.83 Aligned_cols=105 Identities=14% Similarity=0.177 Sum_probs=59.5
Q ss_pred CCCcEEEEEecccchhhHHHHHhhC------CCCCcEEEEEEecCcccccccc--ccc----CceeEE-Eeecccchhhh
Q 021185 16 PPMNLLAIAAGIKQKKIVDQIVRKF------PSKDFVVMLFHYDGVVDEWKDL--VWA----DRAIHV-SAANQTKWWFA 82 (316)
Q Consensus 16 ~~k~Ll~~~VG~kqk~~vd~~v~kf------~~~nF~v~LfhYDg~vd~w~d~--ews----~~aiHv-~a~kqtKWw~a 82 (316)
.++.-|++|| +++..++.++++.- ...+|.|++. =||+.|+-.+. ++. .+.+++ ...+..|..-.
T Consensus 5 ~~~vSVVIP~-yNE~~~i~~~l~~l~~~~~~~~~~~EIIvV-DDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~ 82 (325)
T PRK10714 5 IKKVSVVIPV-YNEQESLPELIRRTTAACESLGKEYEILLI-DDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAI 82 (325)
T ss_pred CCeEEEEEcc-cCchhhHHHHHHHHHHHHHhCCCCEEEEEE-eCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHH
Confidence 3445666666 44444444444321 2346776555 58888764432 111 122222 23344444311
Q ss_pred ccccCccccccccEEEEecccccCCCCCHHHHHHHHHHhCCccc
Q 021185 83 KRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEIS 126 (316)
Q Consensus 83 kRfLHPdiv~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeIS 126 (316)
+.=+ -.+..|||++.|.|+..+...+.++++.++ .|.++.
T Consensus 83 ~~G~---~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 83 MAGF---SHVTGDLIITLDADLQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred HHHH---HhCCCCEEEEECCCCCCCHHHHHHHHHHHH-hhCCEE
Confidence 1111 125789999999999999999999999885 455543
No 63
>PLN02718 Probable galacturonosyltransferase
Probab=21.20 E-value=1.4e+02 Score=32.39 Aligned_cols=83 Identities=23% Similarity=0.340 Sum_probs=51.7
Q ss_pred HHHHHhh-CCCCCcEEEEEEecCc----cccccccccc-CceeEEEeecccchh----------------------hhcc
Q 021185 33 VDQIVRK-FPSKDFVVMLFHYDGV----VDEWKDLVWA-DRAIHVSAANQTKWW----------------------FAKR 84 (316)
Q Consensus 33 vd~~v~k-f~~~nF~v~LfhYDg~----vd~w~d~ews-~~aiHv~a~kqtKWw----------------------~akR 84 (316)
++.++.. ....+|.+.+|. |+. ...|..+.=. +-.|++......+|- -..|
T Consensus 330 InSil~Ns~np~~ivFHVvT-D~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~~~~lk~l~s~~~~~~S~~~y~R 408 (603)
T PLN02718 330 VNSTISSSKEPEKIVFHVVT-DSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADYNSLLMKQNSHDPRYISALNHAR 408 (603)
T ss_pred hhhhhhccCCCCcEEEEEEe-CCCCHHHHHHHHHhCCCCCcEEEEEecchhccccccchhhhhhccccccccccHHHHHH
Confidence 3446664 233567777775 322 2334332211 336666665554442 1237
Q ss_pred ccCccccccccEEEEecccccCCCCCHHHHHHH
Q 021185 85 FLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSI 117 (316)
Q Consensus 85 fLHPdiv~~YDYIflwDDDL~vd~f~i~ry~~i 117 (316)
|+=|+++..++-|...|+|+-|- -++..++++
T Consensus 409 l~ipellp~l~KvLYLD~DvVV~-~DL~eL~~i 440 (603)
T PLN02718 409 FYLPDIFPGLNKIVLFDHDVVVQ-RDLSRLWSL 440 (603)
T ss_pred HHHHHHhcccCEEEEEECCEEec-CCHHHHhcC
Confidence 77799998999999999999984 477777765
No 64
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=20.87 E-value=53 Score=29.12 Aligned_cols=11 Identities=45% Similarity=0.751 Sum_probs=9.6
Q ss_pred cEEEEEEecCc
Q 021185 45 FVVMLFHYDGV 55 (316)
Q Consensus 45 F~v~LfhYDg~ 55 (316)
-+-+||||-|-
T Consensus 90 ~~RvLFHYnGh 100 (154)
T PF14538_consen 90 DERVLFHYNGH 100 (154)
T ss_pred CceEEEEECCC
Confidence 49999999984
No 65
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=20.28 E-value=5.1e+02 Score=24.51 Aligned_cols=93 Identities=25% Similarity=0.338 Sum_probs=62.5
Q ss_pred EEEecccchhhHHHHHhhCCCCCcE--EEEEEecCcccccccc--------cccCceeEEEeecccchhhhccccCcccc
Q 021185 22 AIAAGIKQKKIVDQIVRKFPSKDFV--VMLFHYDGVVDEWKDL--------VWADRAIHVSAANQTKWWFAKRFLHPDIV 91 (316)
Q Consensus 22 ~~~VG~kqk~~vd~~v~kf~~~nF~--v~LfhYDg~vd~w~d~--------ews~~aiHv~a~kqtKWw~akRfLHPdiv 91 (316)
+++-|.--...++.+..+| +|+ +.++-|.+..+++=|. .=.+=.|.+ -||||+.
T Consensus 2 vi~~G~yGeR~~~~i~~~~---~~~~~v~~~~~p~~l~efId~pee~Lp~i~~~Dl~I~y-------------~lHPDl~ 65 (217)
T PF02593_consen 2 VIYDGKYGERVIENIKNYF---DFCRSVIVYEIPEDLPEFIDDPEEYLPKIPEADLLIAY-------------GLHPDLT 65 (217)
T ss_pred eeeeCcchHHHHHHHHhcC---CCCceEEEEeCCccccccccChHHHccCCCCCCEEEEe-------------ccCchhH
Confidence 3444554455566666664 455 8888887766663221 111111111 4799987
Q ss_pred ---------ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCC----CcCC
Q 021185 92 ---------AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQP----ALDP 132 (316)
Q Consensus 92 ---------~~YDYIflwDDDL~vd~f~i~ry~~ivr~~gLeISQP----ALd~ 132 (316)
+.+.+|.++-++-. .-..+.+-+..+++|+++.-| +|++
T Consensus 66 ~~l~~~~~e~g~kavIvp~~~~~--~g~~~~lk~~~e~~gi~~~~P~~~CsL~~ 117 (217)
T PF02593_consen 66 YELPEIAKEAGVKAVIVPSESPK--PGLRRQLKKQLEEFGIEVEFPKPFCSLEE 117 (217)
T ss_pred HHHHHHHHHcCCCEEEEecCCCc--cchHHHHHHHHHhcCceeecCccccccCC
Confidence 67999999988877 677789999999999999988 4565
Done!