Query 021186
Match_columns 316
No_of_seqs 254 out of 2224
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:16:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021186.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021186hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02983 biotin carboxyl carri 100.0 4.6E-50 1E-54 375.0 24.7 267 1-316 1-274 (274)
2 TIGR00531 BCCP acetyl-CoA carb 100.0 2.7E-30 5.9E-35 225.9 19.3 156 144-315 1-156 (156)
3 PRK06302 acetyl-CoA carboxylas 100.0 1.1E-29 2.4E-34 221.7 19.2 155 144-315 1-155 (155)
4 COG0511 AccB Biotin carboxyl c 99.9 2.6E-26 5.6E-31 197.4 13.1 140 149-316 1-140 (140)
5 PRK05889 putative acetyl-CoA c 99.7 1.8E-16 4E-21 120.9 8.5 68 241-315 4-71 (71)
6 PF00364 Biotin_lipoyl: Biotin 99.7 4.3E-17 9.4E-22 125.5 4.7 73 241-314 2-74 (74)
7 PRK07051 hypothetical protein; 99.6 1.1E-15 2.4E-20 119.5 10.0 76 240-315 4-79 (80)
8 PRK08225 acetyl-CoA carboxylas 99.6 1.2E-15 2.5E-20 115.7 8.1 69 240-315 2-70 (70)
9 PRK06748 hypothetical protein; 99.6 2E-15 4.2E-20 120.5 8.5 69 240-315 5-74 (83)
10 PRK06549 acetyl-CoA carboxylas 99.6 1.1E-14 2.3E-19 124.8 11.4 71 238-315 60-130 (130)
11 PRK05641 putative acetyl-CoA c 99.6 3E-14 6.6E-19 125.0 11.2 70 238-314 83-152 (153)
12 cd06850 biotinyl_domain The bi 99.5 6.4E-14 1.4E-18 102.2 8.3 67 241-314 1-67 (67)
13 PRK14042 pyruvate carboxylase 99.4 5.6E-13 1.2E-17 138.1 9.5 71 238-315 524-594 (596)
14 PRK14875 acetoin dehydrogenase 99.3 2.3E-12 5E-17 120.5 8.4 64 246-316 15-78 (371)
15 PRK09282 pyruvate carboxylase 99.3 2.3E-12 4.9E-17 133.4 8.9 74 236-316 519-592 (592)
16 cd06663 Biotinyl_lipoyl_domain 99.3 7.7E-12 1.7E-16 94.5 8.5 61 247-314 13-73 (73)
17 TIGR01108 oadA oxaloacetate de 99.3 5.3E-12 1.1E-16 130.6 8.9 67 238-311 516-582 (582)
18 PRK14040 oxaloacetate decarbox 99.3 5.4E-12 1.2E-16 130.7 8.9 70 239-315 524-593 (593)
19 TIGR02712 urea_carbox urea car 99.3 7.9E-12 1.7E-16 138.1 9.7 73 236-315 1129-1201(1201)
20 PLN02226 2-oxoglutarate dehydr 99.3 6.8E-12 1.5E-16 126.7 8.1 62 247-315 105-166 (463)
21 TIGR01235 pyruv_carbox pyruvat 99.3 8.5E-12 1.8E-16 137.2 8.9 73 236-315 1071-1143(1143)
22 COG4770 Acetyl/propionyl-CoA c 99.3 9.4E-12 2E-16 127.4 7.8 73 237-316 573-645 (645)
23 PRK12999 pyruvate carboxylase; 99.2 1.4E-11 3.1E-16 135.6 8.8 72 238-316 1075-1146(1146)
24 PTZ00144 dihydrolipoamide succ 99.2 2E-11 4.4E-16 122.0 8.4 62 247-315 58-119 (418)
25 COG0508 AceF Pyruvate/2-oxoglu 99.2 4.5E-11 9.7E-16 118.8 7.6 62 247-315 16-77 (404)
26 COG1038 PycA Pyruvate carboxyl 99.2 2.9E-11 6.2E-16 127.6 6.2 77 232-315 1072-1148(1149)
27 PRK05704 dihydrolipoamide succ 99.1 9.4E-11 2E-15 116.6 8.2 62 247-315 16-77 (407)
28 TIGR01347 sucB 2-oxoglutarate 99.1 3E-10 6.4E-15 113.0 8.3 62 247-315 14-75 (403)
29 TIGR02927 SucB_Actino 2-oxoglu 99.0 5.4E-10 1.2E-14 115.8 7.8 62 247-315 149-210 (590)
30 PRK11854 aceF pyruvate dehydro 99.0 5E-10 1.1E-14 116.8 7.5 63 246-315 217-279 (633)
31 PRK11854 aceF pyruvate dehydro 99.0 1.2E-09 2.6E-14 114.0 8.1 63 246-315 13-75 (633)
32 TIGR01348 PDHac_trf_long pyruv 98.9 1.3E-09 2.7E-14 112.1 7.4 74 240-315 117-190 (546)
33 PRK11855 dihydrolipoamide acet 98.9 2.3E-09 5.1E-14 109.9 7.7 74 240-315 120-193 (547)
34 cd06849 lipoyl_domain Lipoyl d 98.9 8E-09 1.7E-13 73.8 8.1 64 244-314 11-74 (74)
35 PLN02528 2-oxoisovalerate dehy 98.9 3.8E-09 8.3E-14 105.4 8.2 62 247-315 12-73 (416)
36 KOG0369 Pyruvate carboxylase [ 98.9 2.8E-09 6E-14 111.4 7.1 75 235-316 1102-1176(1176)
37 KOG0559 Dihydrolipoamide succi 98.9 1E-09 2.2E-14 107.9 3.0 57 260-316 92-148 (457)
38 TIGR01348 PDHac_trf_long pyruv 98.8 1E-08 2.2E-13 105.5 8.3 66 243-315 9-74 (546)
39 PRK11856 branched-chain alpha- 98.8 1.4E-08 3E-13 100.4 8.2 63 246-315 15-77 (411)
40 PRK11855 dihydrolipoamide acet 98.8 1.4E-08 3E-13 104.2 8.2 62 247-315 15-76 (547)
41 PLN02744 dihydrolipoyllysine-r 98.8 1.5E-08 3.3E-13 104.4 7.4 61 247-314 126-187 (539)
42 TIGR01349 PDHac_trf_mito pyruv 98.7 1.8E-08 3.9E-13 101.2 7.6 63 246-315 12-75 (435)
43 KOG0238 3-Methylcrotonyl-CoA c 98.7 1.7E-08 3.6E-13 103.0 4.6 69 240-315 602-670 (670)
44 KOG0557 Dihydrolipoamide acety 98.7 3E-08 6.6E-13 99.8 5.9 62 247-315 52-114 (470)
45 PRK11892 pyruvate dehydrogenas 98.6 5.2E-08 1.1E-12 98.8 7.5 62 247-315 16-78 (464)
46 TIGR02927 SucB_Actino 2-oxoglu 98.6 6.4E-08 1.4E-12 100.5 7.2 63 246-315 15-77 (590)
47 TIGR00998 8a0101 efflux pump m 98.4 5.1E-07 1.1E-11 85.4 6.1 33 284-316 205-237 (334)
48 PRK09783 copper/silver efflux 98.4 9.5E-07 2.1E-11 87.6 8.1 70 239-315 123-241 (409)
49 PRK01202 glycine cleavage syst 98.3 1.2E-06 2.7E-11 74.6 6.8 56 261-316 44-106 (127)
50 PRK10476 multidrug resistance 98.3 1E-06 2.3E-11 84.6 5.8 33 284-316 209-241 (346)
51 cd06848 GCS_H Glycine cleavage 98.3 1.7E-06 3.7E-11 69.8 5.5 56 243-304 24-79 (96)
52 TIGR01730 RND_mfp RND family e 98.2 1.7E-06 3.6E-11 80.4 5.0 69 240-315 27-166 (322)
53 PRK10559 p-hydroxybenzoic acid 98.1 3.8E-06 8.2E-11 80.4 6.3 69 239-314 47-185 (310)
54 PRK15136 multidrug efflux syst 98.1 2.9E-06 6.4E-11 83.6 5.1 32 284-315 216-247 (390)
55 PRK09578 periplasmic multidrug 98.1 5E-06 1.1E-10 81.1 5.9 70 239-315 63-205 (385)
56 PRK03598 putative efflux pump 98.1 5.7E-06 1.2E-10 78.9 6.0 32 284-315 204-235 (331)
57 KOG0368 Acetyl-CoA carboxylase 98.1 5.1E-06 1.1E-10 92.8 6.1 71 237-315 683-753 (2196)
58 KOG0558 Dihydrolipoamide trans 98.0 2.1E-06 4.5E-11 84.7 2.2 58 258-315 82-139 (474)
59 TIGR03309 matur_yqeB selenium- 98.0 2.1E-05 4.6E-10 74.7 8.3 65 239-316 164-228 (256)
60 PRK09859 multidrug efflux syst 98.0 1.2E-05 2.7E-10 78.5 6.2 69 239-314 61-202 (385)
61 TIGR03077 not_gcvH glycine cle 97.9 1.5E-05 3.3E-10 66.8 5.2 42 261-302 37-78 (110)
62 PRK15030 multidrug efflux syst 97.9 8.3E-06 1.8E-10 80.2 3.6 70 238-314 64-206 (397)
63 PRK13380 glycine cleavage syst 97.9 2E-05 4.4E-10 68.8 5.0 57 240-303 36-93 (144)
64 TIGR00527 gcvH glycine cleavag 97.8 2.8E-05 6.1E-10 66.4 5.6 41 263-303 45-85 (127)
65 PRK11578 macrolide transporter 97.8 2.4E-05 5.1E-10 75.9 5.6 70 238-314 60-217 (370)
66 PRK11556 multidrug efflux syst 97.8 3.1E-05 6.6E-10 77.1 5.6 71 237-314 85-228 (415)
67 PRK00624 glycine cleavage syst 97.8 4.6E-05 1E-09 64.3 5.7 38 261-298 39-76 (114)
68 PF12700 HlyD_2: HlyD family s 97.7 2.4E-05 5.1E-10 72.9 2.5 33 239-279 21-53 (328)
69 TIGR02971 heterocyst_DevB ABC 97.7 9.4E-05 2E-09 70.2 6.5 35 239-280 13-50 (327)
70 PF13533 Biotin_lipoyl_2: Biot 97.6 0.0001 2.3E-09 53.1 5.0 32 284-315 3-34 (50)
71 PF13533 Biotin_lipoyl_2: Biot 97.5 7.5E-05 1.6E-09 53.8 2.9 36 240-282 3-38 (50)
72 cd06253 M14_ASTE_ASPA_like_3 A 97.5 0.00049 1.1E-08 66.0 8.5 66 239-314 229-297 (298)
73 TIGR01843 type_I_hlyD type I s 97.4 0.0003 6.6E-09 67.9 6.7 33 239-278 43-75 (423)
74 PRK12784 hypothetical protein; 97.4 0.00052 1.1E-08 54.9 6.6 69 240-315 6-75 (84)
75 cd06251 M14_ASTE_ASPA_like_1 A 97.3 0.0009 1.9E-08 63.6 8.4 65 240-314 220-286 (287)
76 cd06252 M14_ASTE_ASPA_like_2 A 97.2 0.0012 2.6E-08 63.7 8.4 66 240-315 245-314 (316)
77 TIGR02994 ectoine_eutE ectoine 97.1 0.0018 4E-08 63.1 8.3 65 240-314 256-324 (325)
78 cd06250 M14_PaAOTO_like An unc 97.1 0.0015 3.3E-08 64.4 7.5 67 238-314 288-358 (359)
79 PRK05889 putative acetyl-CoA c 97.1 0.0008 1.7E-08 51.2 4.3 32 284-315 3-34 (71)
80 PF01597 GCV_H: Glycine cleava 97.0 0.0016 3.5E-08 55.1 5.8 40 261-300 38-77 (122)
81 PF13375 RnfC_N: RnfC Barrel s 96.9 0.0027 5.8E-08 52.5 6.3 40 259-299 43-82 (101)
82 COG0509 GcvH Glycine cleavage 96.9 0.0014 3E-08 56.9 4.5 41 261-301 46-86 (131)
83 cd06254 M14_ASTE_ASPA_like_4 A 96.8 0.0038 8.1E-08 59.4 7.1 64 238-311 222-287 (288)
84 PRK06748 hypothetical protein; 96.7 0.0032 7E-08 50.6 5.0 34 282-315 3-36 (83)
85 PRK08225 acetyl-CoA carboxylas 96.6 0.0031 6.6E-08 47.6 4.3 33 283-315 1-33 (70)
86 cd06850 biotinyl_domain The bi 96.4 0.0044 9.6E-08 44.7 3.9 30 286-315 2-31 (67)
87 COG1566 EmrA Multidrug resista 96.2 0.0024 5.3E-08 63.3 2.1 33 284-316 209-241 (352)
88 COG3608 Predicted deacylase [G 96.1 0.014 3.1E-07 57.6 7.0 65 239-313 256-323 (331)
89 PRK09439 PTS system glucose-sp 95.9 0.018 3.8E-07 51.9 6.0 65 240-315 21-124 (169)
90 cd06255 M14_ASTE_ASPA_like_5 A 95.9 0.023 5E-07 54.4 7.1 51 239-297 231-283 (293)
91 COG0511 AccB Biotin carboxyl c 95.8 0.011 2.3E-07 51.2 4.1 34 282-315 69-102 (140)
92 PRK10476 multidrug resistance 95.6 0.021 4.6E-07 55.0 5.6 40 275-316 42-81 (346)
93 cd00210 PTS_IIA_glc PTS_IIA, P 95.5 0.042 9.2E-07 47.1 6.6 20 296-315 83-102 (124)
94 PRK06549 acetyl-CoA carboxylas 95.5 0.02 4.3E-07 49.5 4.5 33 283-315 61-93 (130)
95 TIGR00830 PTBA PTS system, glu 95.4 0.041 8.9E-07 47.0 6.2 20 296-315 83-102 (121)
96 TIGR00998 8a0101 efflux pump m 95.3 0.022 4.8E-07 54.0 4.7 34 283-316 42-75 (334)
97 PF00364 Biotin_lipoyl: Biotin 95.3 0.02 4.3E-07 44.0 3.6 32 284-315 1-38 (74)
98 PRK07051 hypothetical protein; 95.2 0.02 4.2E-07 44.7 3.3 32 240-278 48-79 (80)
99 PRK05641 putative acetyl-CoA c 95.1 0.028 6.2E-07 49.7 4.4 32 284-315 85-116 (153)
100 PF00358 PTS_EIIA_1: phosphoen 95.0 0.039 8.4E-07 47.8 4.9 65 240-315 3-106 (132)
101 TIGR01843 type_I_hlyD type I s 94.9 0.041 9E-07 53.2 5.3 41 275-315 35-75 (423)
102 TIGR01000 bacteriocin_acc bact 94.9 0.049 1.1E-06 54.9 6.0 42 275-316 51-92 (457)
103 PRK15136 multidrug efflux syst 94.8 0.039 8.5E-07 54.7 4.9 34 283-316 61-94 (390)
104 PF04952 AstE_AspA: Succinylgl 94.8 0.08 1.7E-06 49.5 6.7 67 239-315 220-290 (292)
105 PRK09859 multidrug efflux syst 94.8 0.048 1E-06 53.5 5.4 53 263-316 42-94 (385)
106 PRK03598 putative efflux pump 94.7 0.062 1.3E-06 51.4 5.8 41 274-316 36-76 (331)
107 PRK11578 macrolide transporter 94.7 0.06 1.3E-06 52.4 5.8 43 273-316 52-94 (370)
108 PRK09578 periplasmic multidrug 94.6 0.059 1.3E-06 52.8 5.6 44 272-316 53-96 (385)
109 PRK11556 multidrug efflux syst 94.6 0.057 1.2E-06 53.9 5.5 53 263-316 68-120 (415)
110 PF09891 DUF2118: Uncharacteri 94.5 0.05 1.1E-06 48.3 4.3 39 260-298 94-133 (150)
111 TIGR01936 nqrA NADH:ubiquinone 94.5 0.039 8.5E-07 56.4 4.1 39 260-299 43-81 (447)
112 TIGR03794 NHPM_micro_HlyD NHPM 94.5 0.067 1.5E-06 53.1 5.7 37 280-316 55-91 (421)
113 PF13437 HlyD_3: HlyD family s 94.5 0.059 1.3E-06 42.8 4.3 33 241-280 1-33 (105)
114 COG2190 NagE Phosphotransferas 94.4 0.075 1.6E-06 47.5 5.3 65 240-315 6-109 (156)
115 PF00529 HlyD: HlyD family sec 94.3 0.026 5.6E-07 52.0 2.2 33 241-280 3-35 (305)
116 PRK15030 multidrug efflux syst 94.2 0.086 1.9E-06 52.1 5.6 43 273-316 56-98 (397)
117 TIGR01235 pyruv_carbox pyruvat 94.2 0.054 1.2E-06 61.1 4.7 68 240-315 1039-1106(1143)
118 TIGR01945 rnfC electron transp 94.1 0.12 2.6E-06 52.2 6.7 39 259-298 44-82 (435)
119 COG1566 EmrA Multidrug resista 93.9 0.075 1.6E-06 52.9 4.6 34 283-316 53-86 (352)
120 PRK10559 p-hydroxybenzoic acid 93.9 0.081 1.8E-06 50.9 4.7 33 284-316 48-80 (310)
121 PRK05352 Na(+)-translocating N 93.7 0.083 1.8E-06 54.0 4.8 38 260-298 44-81 (448)
122 TIGR00999 8a0102 Membrane Fusi 93.6 0.09 1.9E-06 47.9 4.3 32 284-315 89-120 (265)
123 PF05896 NQRA: Na(+)-transloca 93.5 0.094 2E-06 50.2 4.3 41 260-301 43-83 (257)
124 PRK10255 PTS system N-acetyl g 93.4 0.18 4E-06 53.8 6.8 66 239-315 498-602 (648)
125 TIGR03794 NHPM_micro_HlyD NHPM 92.9 0.12 2.6E-06 51.3 4.2 32 284-315 254-285 (421)
126 PRK09824 PTS system beta-gluco 92.8 0.2 4.3E-06 53.3 6.0 64 241-315 480-582 (627)
127 PRK05035 electron transport co 92.7 0.31 6.6E-06 52.5 7.2 39 259-298 50-88 (695)
128 TIGR01995 PTS-II-ABC-beta PTS 92.5 0.26 5.6E-06 52.2 6.4 64 241-315 464-566 (610)
129 PRK09783 copper/silver efflux 92.3 0.24 5.3E-06 49.4 5.6 43 273-315 112-156 (409)
130 COG4656 RnfC Predicted NADH:ub 92.3 0.1 2.2E-06 54.4 2.9 38 259-298 46-83 (529)
131 COG0845 AcrA Membrane-fusion p 92.2 0.32 7E-06 44.5 5.8 45 271-316 55-99 (372)
132 KOG3373 Glycine cleavage syste 92.0 0.11 2.4E-06 46.8 2.5 42 262-303 88-129 (172)
133 PF06898 YqfD: Putative stage 91.9 1.5 3.3E-05 43.8 10.6 145 91-295 96-245 (385)
134 PRK14042 pyruvate carboxylase 91.2 0.24 5.1E-06 52.5 4.3 32 284-315 526-557 (596)
135 PRK05305 phosphatidylserine de 90.7 0.41 8.8E-06 43.9 4.9 48 261-312 155-202 (206)
136 TIGR00164 PS_decarb_rel phosph 90.5 0.44 9.5E-06 43.1 4.8 48 261-312 135-182 (189)
137 TIGR00531 BCCP acetyl-CoA carb 90.3 0.22 4.7E-06 44.0 2.6 33 239-278 124-156 (156)
138 PRK14875 acetoin dehydrogenase 90.1 0.27 5.9E-06 46.2 3.3 35 240-281 46-80 (371)
139 PLN02983 biotin carboxyl carri 90.0 0.37 7.9E-06 46.6 4.1 30 286-315 200-236 (274)
140 TIGR02876 spore_yqfD sporulati 89.9 2.5 5.3E-05 42.4 10.0 125 92-275 94-222 (382)
141 PRK06302 acetyl-CoA carboxylas 89.8 0.27 5.8E-06 43.3 2.8 33 239-278 123-155 (155)
142 PRK14040 oxaloacetate decarbox 89.6 0.4 8.6E-06 50.8 4.3 33 283-315 524-556 (593)
143 TIGR01108 oadA oxaloacetate de 89.4 0.41 9E-06 50.5 4.3 33 283-315 517-549 (582)
144 TIGR01000 bacteriocin_acc bact 89.0 0.42 9.2E-06 48.2 3.9 34 283-316 316-350 (457)
145 PRK09282 pyruvate carboxylase 88.6 0.53 1.2E-05 49.7 4.4 33 283-315 522-554 (592)
146 COG1726 NqrA Na+-transporting 88.0 0.52 1.1E-05 47.6 3.6 41 260-302 43-84 (447)
147 cd06663 Biotinyl_lipoyl_domain 87.9 0.43 9.2E-06 35.7 2.4 31 240-277 43-73 (73)
148 PF07831 PYNP_C: Pyrimidine nu 87.4 1 2.2E-05 35.3 4.3 30 243-281 28-57 (75)
149 PLN02226 2-oxoglutarate dehydr 87.3 0.45 9.7E-06 49.1 2.9 35 239-280 134-168 (463)
150 COG4770 Acetyl/propionyl-CoA c 86.3 0.73 1.6E-05 48.8 3.8 31 285-315 577-607 (645)
151 COG4072 Uncharacterized protei 86.0 1.2 2.5E-05 39.6 4.3 51 241-298 93-144 (161)
152 PF02666 PS_Dcarbxylase: Phosp 85.5 0.96 2.1E-05 41.0 3.7 63 240-313 137-202 (202)
153 TIGR02712 urea_carbox urea car 85.3 0.92 2E-05 51.7 4.3 33 283-315 1132-1164(1201)
154 cd06849 lipoyl_domain Lipoyl d 84.6 1.3 2.8E-05 30.9 3.4 28 288-315 11-38 (74)
155 PTZ00144 dihydrolipoamide succ 84.5 0.71 1.5E-05 47.0 2.7 35 239-280 87-121 (418)
156 COG0845 AcrA Membrane-fusion p 84.0 0.75 1.6E-05 42.1 2.4 32 241-279 68-99 (372)
157 KOG0559 Dihydrolipoamide succi 83.0 0.87 1.9E-05 46.1 2.5 35 239-280 115-149 (457)
158 PRK12999 pyruvate carboxylase; 82.8 1.4 3E-05 50.1 4.3 33 283-315 1076-1108(1146)
159 COG1038 PycA Pyruvate carboxyl 82.8 2.2 4.8E-05 47.2 5.6 32 284-315 1080-1111(1149)
160 PRK09439 PTS system glucose-sp 82.0 2.7 5.9E-05 37.9 5.1 20 260-279 106-125 (169)
161 TIGR01730 RND_mfp RND family e 81.1 1.5 3.2E-05 40.8 3.2 35 239-280 134-168 (322)
162 TIGR00999 8a0102 Membrane Fusi 80.9 1.4 3.1E-05 40.1 3.0 31 241-278 90-120 (265)
163 PRK05704 dihydrolipoamide succ 80.8 1.4 3E-05 44.6 3.1 36 239-281 45-80 (407)
164 COG2190 NagE Phosphotransferas 80.5 2 4.2E-05 38.6 3.6 55 260-314 91-153 (156)
165 PRK14844 bifunctional DNA-dire 80.2 2 4.3E-05 52.5 4.5 22 257-278 2421-2442(2836)
166 TIGR01995 PTS-II-ABC-beta PTS 79.5 2.6 5.7E-05 44.7 4.8 55 260-314 548-609 (610)
167 PRK12784 hypothetical protein; 79.4 1.7 3.7E-05 35.1 2.6 33 283-315 5-37 (84)
168 PRK09824 PTS system beta-gluco 78.5 3 6.5E-05 44.6 4.9 55 260-314 564-625 (627)
169 TIGR01347 sucB 2-oxoglutarate 77.7 2 4.3E-05 43.4 3.1 35 239-280 43-77 (403)
170 COG0508 AceF Pyruvate/2-oxoglu 77.7 2.2 4.9E-05 43.0 3.5 35 239-280 45-79 (404)
171 KOG0368 Acetyl-CoA carboxylase 76.0 3.2 6.9E-05 48.6 4.3 51 265-315 667-717 (2196)
172 PRK02597 rpoC2 DNA-directed RN 76.0 5.5 0.00012 46.1 6.3 36 259-294 404-446 (1331)
173 PF12700 HlyD_2: HlyD family s 74.5 6.2 0.00014 36.7 5.3 39 241-279 136-192 (328)
174 PRK03934 phosphatidylserine de 73.8 5.3 0.00011 38.1 4.7 71 241-314 186-265 (265)
175 KOG0238 3-Methylcrotonyl-CoA c 73.2 2.8 6.1E-05 44.3 2.9 30 286-315 604-633 (670)
176 PLN02528 2-oxoisovalerate dehy 72.5 3.4 7.4E-05 41.9 3.3 35 240-281 42-76 (416)
177 TIGR00830 PTBA PTS system, glu 70.6 2.8 6.1E-05 35.9 1.9 21 260-280 84-104 (121)
178 PRK10255 PTS system N-acetyl g 70.4 5.4 0.00012 43.0 4.3 41 240-280 536-604 (648)
179 PRK03140 phosphatidylserine de 68.7 4.5 9.7E-05 38.5 3.0 64 241-314 195-258 (259)
180 TIGR01349 PDHac_trf_mito pyruv 68.2 4.5 9.8E-05 41.2 3.1 34 240-280 43-77 (435)
181 PF02749 QRPTase_N: Quinolinat 68.1 4.5 9.7E-05 32.1 2.4 20 260-279 49-68 (88)
182 TIGR03309 matur_yqeB selenium- 67.8 6 0.00013 38.1 3.6 34 281-315 162-195 (256)
183 COG3608 Predicted deacylase [G 67.7 5.9 0.00013 39.5 3.7 32 284-316 257-288 (331)
184 KOG0369 Pyruvate carboxylase [ 66.9 11 0.00023 41.5 5.6 32 284-315 1107-1138(1176)
185 PRK11856 branched-chain alpha- 66.8 5.7 0.00012 39.7 3.4 35 240-281 46-80 (411)
186 TIGR02645 ARCH_P_rylase putati 66.6 9.2 0.0002 40.0 5.0 42 274-315 404-469 (493)
187 cd00210 PTS_IIA_glc PTS_IIA, P 65.6 4.2 9.1E-05 34.9 1.9 20 260-279 84-103 (124)
188 PF00358 PTS_EIIA_1: phosphoen 65.6 2.7 5.9E-05 36.4 0.8 22 260-281 88-109 (132)
189 cd06251 M14_ASTE_ASPA_like_1 A 63.3 9.2 0.0002 36.5 4.0 33 282-315 218-250 (287)
190 cd06255 M14_ASTE_ASPA_like_5 A 61.9 10 0.00022 36.4 4.0 32 283-315 231-262 (293)
191 PF01551 Peptidase_M23: Peptid 61.7 16 0.00036 28.5 4.6 12 241-252 15-26 (96)
192 cd06253 M14_ASTE_ASPA_like_3 A 61.7 9.5 0.00021 36.8 3.8 32 283-315 229-260 (298)
193 PLN02744 dihydrolipoyllysine-r 61.0 7.5 0.00016 41.0 3.2 26 290-315 125-150 (539)
194 cd06910 M14_ASTE_ASPA_like_7 A 60.4 15 0.00032 34.8 4.8 47 261-314 225-272 (272)
195 PRK11637 AmiB activator; Provi 59.7 13 0.00028 37.4 4.4 20 260-279 381-400 (428)
196 cd06250 M14_PaAOTO_like An unc 59.3 12 0.00025 37.3 4.0 31 284-315 290-320 (359)
197 TIGR02971 heterocyst_DevB ABC 59.3 11 0.00025 35.7 3.9 32 239-278 204-235 (327)
198 cd06254 M14_ASTE_ASPA_like_4 A 59.2 12 0.00026 35.6 4.0 34 281-315 221-254 (288)
199 PRK02597 rpoC2 DNA-directed RN 59.0 10 0.00023 44.0 4.1 23 255-277 947-969 (1331)
200 PRK04350 thymidine phosphoryla 58.5 16 0.00035 38.2 5.0 40 276-315 398-461 (490)
201 PF01551 Peptidase_M23: Peptid 58.4 8.7 0.00019 30.1 2.4 21 260-280 55-75 (96)
202 PRK09603 bifunctional DNA-dire 58.2 13 0.00027 46.2 4.7 23 255-277 2611-2633(2890)
203 COG1443 Idi Isopentenyldiphosp 57.3 5.1 0.00011 36.8 1.1 31 61-91 117-155 (185)
204 TIGR02994 ectoine_eutE ectoine 57.1 14 0.00029 36.4 4.0 30 285-315 257-286 (325)
205 PF07831 PYNP_C: Pyrimidine nu 57.1 8.8 0.00019 30.0 2.2 20 296-315 35-54 (75)
206 PRK04192 V-type ATP synthase s 56.9 18 0.00038 38.8 5.1 53 260-314 122-177 (586)
207 COG4942 Membrane-bound metallo 56.7 14 0.00031 37.9 4.2 37 274-314 354-390 (420)
208 PF05896 NQRA: Na(+)-transloca 55.8 6.8 0.00015 37.7 1.7 28 286-313 32-59 (257)
209 PRK10871 nlpD lipoprotein NlpD 55.6 23 0.0005 35.2 5.3 20 295-314 270-289 (319)
210 TIGR03327 AMP_phos AMP phospho 55.2 19 0.00041 37.9 4.9 39 277-315 408-470 (500)
211 PRK11892 pyruvate dehydrogenas 54.7 11 0.00025 38.8 3.2 34 240-280 46-80 (464)
212 PRK14698 V-type ATP synthase s 54.2 24 0.00052 40.1 5.8 53 261-315 123-178 (1017)
213 cd06252 M14_ASTE_ASPA_like_2 A 53.7 24 0.00051 34.2 5.1 34 281-315 242-275 (316)
214 cd01134 V_A-ATPase_A V/A-type 52.9 29 0.00063 35.2 5.6 43 260-303 53-98 (369)
215 TIGR01042 V-ATPase_V1_A V-type 50.9 32 0.0007 36.9 5.8 53 261-315 123-178 (591)
216 PRK05820 deoA thymidine phosph 48.9 27 0.00059 36.1 4.8 37 279-315 336-403 (440)
217 PRK09603 bifunctional DNA-dire 48.8 22 0.00048 44.2 4.7 18 297-314 2616-2633(2890)
218 TIGR02643 T_phosphoryl thymidi 48.1 29 0.00062 35.9 4.8 37 279-315 335-402 (437)
219 TIGR02644 Y_phosphoryl pyrimid 46.9 31 0.00068 35.2 4.9 39 277-315 327-396 (405)
220 PRK10871 nlpD lipoprotein NlpD 46.9 23 0.0005 35.1 3.9 40 240-279 230-291 (319)
221 PF02749 QRPTase_N: Quinolinat 46.8 15 0.00032 29.1 2.0 24 292-315 44-67 (88)
222 TIGR02643 T_phosphoryl thymidi 46.3 14 0.00031 38.1 2.3 41 239-279 339-403 (437)
223 TIGR00163 PS_decarb phosphatid 46.1 19 0.00041 33.8 3.0 48 265-313 189-236 (238)
224 PRK05820 deoA thymidine phosph 45.8 15 0.00032 38.0 2.4 42 239-280 340-405 (440)
225 PRK06078 pyrimidine-nucleoside 45.4 33 0.00071 35.4 4.8 39 277-315 329-398 (434)
226 TIGR02388 rpoC2_cyan DNA-direc 45.0 36 0.00077 39.5 5.4 39 257-295 402-447 (1227)
227 PF06898 YqfD: Putative stage 44.4 23 0.0005 35.5 3.4 34 280-313 186-226 (385)
228 CHL00117 rpoC2 RNA polymerase 44.3 24 0.00053 41.2 4.0 41 256-296 402-450 (1364)
229 PRK06078 pyrimidine-nucleoside 43.1 17 0.00037 37.5 2.3 43 239-281 335-401 (434)
230 COG0157 NadC Nicotinate-nucleo 42.5 17 0.00038 35.5 2.2 21 260-280 68-88 (280)
231 TIGR02388 rpoC2_cyan DNA-direc 40.8 28 0.00061 40.3 3.8 23 255-277 945-967 (1227)
232 TIGR02644 Y_phosphoryl pyrimid 39.2 24 0.00051 36.1 2.7 42 239-280 333-398 (405)
233 cd06848 GCS_H Glycine cleavage 38.9 27 0.00059 27.9 2.5 27 289-315 26-53 (96)
234 COG1155 NtpA Archaeal/vacuolar 38.9 67 0.0015 34.4 5.9 54 260-314 120-175 (588)
235 TIGR02645 ARCH_P_rylase putati 38.8 20 0.00042 37.7 2.0 42 239-280 413-471 (493)
236 PRK04350 thymidine phosphoryla 38.6 20 0.00044 37.5 2.1 42 239-280 405-463 (490)
237 PF12631 GTPase_Cys_C: Catalyt 37.7 12 0.00026 28.8 0.2 9 83-91 65-73 (73)
238 TIGR03327 AMP_phos AMP phospho 37.5 22 0.00048 37.3 2.2 42 239-280 414-472 (500)
239 KOG0557 Dihydrolipoamide acety 37.1 28 0.0006 36.4 2.7 25 291-315 52-76 (470)
240 TIGR01043 ATP_syn_A_arch ATP s 36.6 64 0.0014 34.6 5.4 52 261-314 120-174 (578)
241 COG4072 Uncharacterized protei 36.3 70 0.0015 28.7 4.7 27 289-315 97-123 (161)
242 PF09891 DUF2118: Uncharacteri 35.9 34 0.00073 30.6 2.8 40 265-315 73-112 (150)
243 CHL00117 rpoC2 RNA polymerase 35.8 87 0.0019 36.9 6.7 74 240-316 350-425 (1364)
244 TIGR00164 PS_decarb_rel phosph 35.2 85 0.0018 28.3 5.3 70 238-315 71-152 (189)
245 PRK05305 phosphatidylserine de 35.0 91 0.002 28.5 5.6 76 239-315 91-172 (206)
246 COG0739 NlpD Membrane proteins 33.5 31 0.00068 31.4 2.3 20 259-278 215-234 (277)
247 PF13375 RnfC_N: RnfC Barrel s 32.9 70 0.0015 26.4 4.0 47 267-314 14-61 (101)
248 TIGR02876 spore_yqfD sporulati 32.4 41 0.00088 33.8 3.1 32 282-313 185-223 (382)
249 PRK10718 RpoE-regulated lipopr 31.8 1E+02 0.0022 28.8 5.2 54 241-305 59-115 (191)
250 PRK00044 psd phosphatidylserin 31.2 41 0.00089 32.5 2.8 49 265-315 237-286 (288)
251 PRK06149 hypothetical protein; 30.1 34 0.00074 38.3 2.3 40 240-279 443-496 (972)
252 KOG2419 Phosphatidylserine dec 28.7 26 0.00056 38.3 1.0 33 240-280 886-918 (975)
253 cd01572 QPRTase Quinolinate ph 27.7 43 0.00092 32.1 2.2 20 260-279 62-81 (268)
254 PRK13380 glycine cleavage syst 27.4 53 0.0012 28.8 2.6 32 284-315 36-68 (144)
255 PF12166 DUF3595: Protein of u 27.2 19 0.00041 36.0 -0.3 16 75-90 22-37 (422)
256 PRK14844 bifunctional DNA-dire 26.6 1.1E+02 0.0024 38.5 5.7 57 260-316 2322-2443(2836)
257 PRK08072 nicotinate-nucleotide 26.5 46 0.00099 32.2 2.2 20 260-279 68-87 (277)
258 PRK02693 apocytochrome f; Revi 25.5 1.2E+02 0.0027 30.0 4.9 60 236-312 193-255 (312)
259 PF02666 PS_Dcarbxylase: Phosp 25.5 1.5E+02 0.0032 26.8 5.2 78 237-315 79-169 (202)
260 PRK03934 phosphatidylserine de 25.2 2E+02 0.0043 27.5 6.2 35 271-305 116-150 (265)
261 PRK02259 aspartoacylase; Provi 25.0 1E+02 0.0023 29.5 4.3 61 241-312 216-281 (288)
262 PF01333 Apocytochr_F_C: Apocy 24.9 46 0.001 28.8 1.7 55 241-312 4-61 (118)
263 PF06572 DUF1131: Protein of u 24.3 84 0.0018 28.8 3.3 44 262-305 49-95 (171)
264 PRK06543 nicotinate-nucleotide 23.3 56 0.0012 31.9 2.1 20 260-279 69-88 (281)
265 PRK06096 molybdenum transport 23.3 56 0.0012 31.8 2.2 20 260-279 65-84 (284)
266 KOG1668 Elongation factor 1 be 22.9 55 0.0012 31.3 1.9 40 241-285 167-207 (231)
267 PRK05742 nicotinate-nucleotide 22.7 60 0.0013 31.4 2.2 20 260-279 70-89 (277)
268 PF01333 Apocytochr_F_C: Apocy 22.2 32 0.00069 29.7 0.2 27 249-275 35-61 (118)
269 COG0739 NlpD Membrane proteins 22.1 1.4E+02 0.003 27.1 4.4 35 276-314 199-233 (277)
270 PF01206 TusA: Sulfurtransfera 21.7 1.3E+02 0.0029 22.1 3.5 31 147-177 38-70 (70)
271 PTZ00403 phosphatidylserine de 21.6 83 0.0018 31.7 3.0 73 240-315 249-339 (353)
272 COG0213 DeoA Thymidine phospho 21.5 1.4E+02 0.0031 31.0 4.7 38 277-314 330-398 (435)
273 cd01568 QPRTase_NadC Quinolina 21.4 65 0.0014 30.7 2.1 21 260-280 61-81 (269)
274 PF06670 Etmic-2: Microneme pr 21.3 41 0.00089 32.9 0.8 26 74-99 220-256 (379)
275 PRK07428 nicotinate-nucleotide 21.3 67 0.0015 31.3 2.2 20 260-279 76-95 (288)
276 cd01572 QPRTase Quinolinate ph 21.2 95 0.0021 29.7 3.2 25 291-315 56-80 (268)
277 PRK11649 putative peptidase; P 21.1 75 0.0016 32.7 2.6 20 260-279 365-384 (439)
278 PRK06096 molybdenum transport 21.1 1.5E+02 0.0032 28.9 4.5 24 292-315 60-83 (284)
279 PRK05848 nicotinate-nucleotide 20.9 69 0.0015 31.0 2.2 20 260-279 62-81 (273)
280 PRK06978 nicotinate-nucleotide 20.8 69 0.0015 31.5 2.2 20 260-279 86-105 (294)
281 COG0688 Psd Phosphatidylserine 20.8 70 0.0015 30.4 2.2 59 240-311 174-233 (239)
282 cd00291 SirA_YedF_YeeD SirA, Y 20.6 1.9E+02 0.0041 20.9 4.1 31 147-177 37-69 (69)
283 cd01573 modD_like ModD; Quinol 20.4 72 0.0016 30.6 2.2 20 260-279 60-79 (272)
284 PRK06106 nicotinate-nucleotide 20.1 73 0.0016 31.0 2.2 20 260-279 74-93 (281)
No 1
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=100.00 E-value=4.6e-50 Score=374.98 Aligned_cols=267 Identities=62% Similarity=0.935 Sum_probs=216.1
Q ss_pred CCCCCCCCCCCccccccccCCcccceeecceEEEEecCCCCCceeeeechhhhhhcCCCCCCcccceEeeeccccccccc
Q 021186 1 MASSSLATGTPSASAFSKNSSSLVHYYRNGTVFFRLSSSKPKLRFFAKTETVLRIQGSQPSWKCATVVKSQLNEVSFFQW 80 (316)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (316)
|||++.++... +.++++.. +++++++||++ +||+|||++| |+++++..+++|||||||
T Consensus 1 mas~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~-~~~~~~f~~~--------~~~~~~~~~~~~~a~~ne------ 58 (274)
T PLN02983 1 MASLSVPCAKT--AAAAANVG-----SRLSRSSFRLQ-PKPNISFPSK--------GPNPKRSAVPKVKAQLNE------ 58 (274)
T ss_pred CCccccCcccc--eeeccccc-----ccccccccccC-CCCCcccccC--------CCCcccceeeeEEeeece------
Confidence 78876555433 33444333 45568899999 9999999999 899999999999999999
Q ss_pred cchhhhhcchhhhcccccCCCceeEEEecCCCCCCCCCc-------cccccCCCCCCCCCCCccccchhcccHHHHHHHH
Q 021186 81 FSFEDIFSNFRSFLDSLLGTPVEFKVAFDGSSNASATPA-------AETKDAKQPNEPSPSILASEESISEFISQVSSLI 153 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~qI~eLI 153 (316)
|+++||||++++.. .+++|.+.+++++++.++++++|+.|+.|+..|+
T Consensus 59 -------------------------~~~~~~sn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~f~~qv~~lv 113 (274)
T PLN02983 59 -------------------------VAVDGSSNSAKSDDPKSEVAPSEPKDEPPSNSSSKPNLPDEESISEFMTQVSSLV 113 (274)
T ss_pred -------------------------eeeccccccccccCCcccccccccccccccccCCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999998843 5788889999999999999999999999999999
Q ss_pred HHHhhCCCcEEEEEeCCeEEEEEecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021186 154 KLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGK 233 (316)
Q Consensus 154 klld~S~IsELeLk~~d~~L~LrK~~~~~~~~~~a~~~~~~sp~~~~~a~~a~~~pa~a~~apaas~a~p~s~~~~~a~~ 233 (316)
|++|.+||.||+||+.||+|.|||+++.+++++++++++|+.+.+...++.++ ++...+.+.+..+.+...+.+.+.+
T Consensus 114 ~lv~~~di~e~~lk~~~~e~~irkkeal~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (274)
T PLN02983 114 KLVDSRDIVELQLKQLDCELVIRKKEALPQPPPPAPVVMMQPPPPHAMPPASP--PAAQPAPSAPASSPPPTPASPPPAK 191 (274)
T ss_pred hhhccccceeeeccccceEEEEecccccCCCCCCCceEEecCCCcccCCCCCC--cccCCCCCCCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999887766666666666654433332221 1110010011011111112233345
Q ss_pred CCCCCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 021186 234 SVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV 313 (316)
Q Consensus 234 ~~~~~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~ 313 (316)
...++...|+|||.|+||+.|.++..|+|++||.|++||+||+||+||+.++|+|+++|+|++|++++||.|.+|++|++
T Consensus 192 ~~~s~~~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~ 271 (274)
T PLN02983 192 APKSSHPPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFV 271 (274)
T ss_pred CCcCCCCeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEE
Confidence 56677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcC
Q 021186 314 IEP 316 (316)
Q Consensus 314 IeP 316 (316)
|+|
T Consensus 272 IEP 274 (274)
T PLN02983 272 IEP 274 (274)
T ss_pred ecC
Confidence 987
No 2
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.97 E-value=2.7e-30 Score=225.87 Aligned_cols=156 Identities=42% Similarity=0.707 Sum_probs=112.9
Q ss_pred ccHHHHHHHHHHHhhCCCcEEEEEeCCeEEEEEecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021186 144 EFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPP 223 (316)
Q Consensus 144 ~~i~qI~eLIklld~S~IsELeLk~~d~~L~LrK~~~~~~~~~~a~~~~~~sp~~~~~a~~a~~~pa~a~~apaas~a~p 223 (316)
|++++|++||++|++++|+||+|+++|++|+|+|+...... ...... + ++.....+ .+.. ...+. +
T Consensus 1 Md~~~Ik~Li~~~~~s~l~elei~~~~~~l~l~k~~~~~~~-~~~~~~----~--~~~~~~~~-~~~~-~~~~~-----~ 66 (156)
T TIGR00531 1 MNIREIKELIKLIEESGITELELKEEEFEVRLSKAAAAAKK-SAVQQA----A--APVPAQVP-AAPS-AQAPA-----P 66 (156)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEeCCEEEEEEecCCCCcc-cccccc----C--CCccccCC-CCCC-CCCCC-----C
Confidence 58899999999999999999999999999999996432110 000000 0 00000000 0000 00000 0
Q ss_pred CCCCCCCCCCCCCCCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCC
Q 021186 224 ASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 303 (316)
Q Consensus 224 ~s~~~~~a~~~~~~~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd 303 (316)
. ...........+...|+|||+|+||++|+|+.+|+|++||.|++||+||+||+||++++|+|+++|+|.+|++++|+
T Consensus 67 ~--~~~~~~~~~~~~~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~ 144 (156)
T TIGR00531 67 A--VCAPAPAKADKKGHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQ 144 (156)
T ss_pred C--CCCCCcccccCCCCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCC
Confidence 0 00000011112335799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEc
Q 021186 304 PVSVDTPLFVIE 315 (316)
Q Consensus 304 ~V~~GqpL~~Ie 315 (316)
.|++||+||+|+
T Consensus 145 ~V~~Gq~L~~i~ 156 (156)
T TIGR00531 145 PVEYGQPLIVIE 156 (156)
T ss_pred EECCCCEEEEEC
Confidence 999999999985
No 3
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.97 E-value=1.1e-29 Score=221.73 Aligned_cols=155 Identities=44% Similarity=0.755 Sum_probs=112.9
Q ss_pred ccHHHHHHHHHHHhhCCCcEEEEEeCCeEEEEEecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021186 144 EFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPP 223 (316)
Q Consensus 144 ~~i~qI~eLIklld~S~IsELeLk~~d~~L~LrK~~~~~~~~~~a~~~~~~sp~~~~~a~~a~~~pa~a~~apaas~a~p 223 (316)
|++++|++||++|++++|+||+|+.+|++|+|+|+............ ... +..+ .++...+... .+
T Consensus 1 Md~~~I~~Li~~~~~s~l~ele~~~~~~~i~l~k~~~~~~~~~~~~~--~~~----p~~~----~~~~~~~~~~----~~ 66 (155)
T PRK06302 1 MDIRKIKKLIELVDESGISEFEIKEGEESVRISRAAAAPVAPVAQQA--AAA----PVAA----APAAAAAAAA----AP 66 (155)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEcCCEEEEEEeCCCCCcccccccc--ccC----CCCC----CCCCCCcccc----CC
Confidence 58899999999999999999999999999999986432110000000 000 0000 0000000000 00
Q ss_pred CCCCCCCCCCCCCCCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCC
Q 021186 224 ASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 303 (316)
Q Consensus 224 ~s~~~~~a~~~~~~~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd 303 (316)
.. ... ......+...|+|||+|+||++|+|+.+|||++||.|++||+||+||+||++++|+|+++|+|.++++++|+
T Consensus 67 ~~--~~~-~~~~~~~~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~ 143 (155)
T PRK06302 67 AA--APA-AAAAEAEGHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQ 143 (155)
T ss_pred CC--CCC-CCccCCCCCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCC
Confidence 00 000 011112335799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEc
Q 021186 304 PVSVDTPLFVIE 315 (316)
Q Consensus 304 ~V~~GqpL~~Ie 315 (316)
.|++||+||+|+
T Consensus 144 ~V~~Gq~L~~i~ 155 (155)
T PRK06302 144 PVEFGQPLFVIE 155 (155)
T ss_pred EeCCCCEEEEeC
Confidence 999999999985
No 4
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.94 E-value=2.6e-26 Score=197.44 Aligned_cols=140 Identities=40% Similarity=0.634 Sum_probs=101.0
Q ss_pred HHHHHHHHhhCCCcEEEEEeCCeEEEEEecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021186 149 VSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPS 228 (316)
Q Consensus 149 I~eLIklld~S~IsELeLk~~d~~L~LrK~~~~~~~~~~a~~~~~~sp~~~~~a~~a~~~pa~a~~apaas~a~p~s~~~ 228 (316)
|++|++.++++++.+++++.++.+++++++....+. ...... . .... +......+.+. .+.
T Consensus 1 i~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~---~----~~~~-----~~~~~~~~~~~--~~~---- 61 (140)
T COG0511 1 IKELIKLVVESDGTEFEVKVEEGEVRLSRKTPVVQD-VPAPAP---I----EASS-----PSAAAAQPAAS--APA---- 61 (140)
T ss_pred CcchhhheeeeCcEEEEEEeCCcEEEEeeccccccc-cccccc---c----cccc-----ccccccCcccc--ccc----
Confidence 468999999999999999999999999987611110 000000 0 0000 00000000000 000
Q ss_pred CCCCCCCCCCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCC
Q 021186 229 STAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVD 308 (316)
Q Consensus 229 ~~a~~~~~~~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~G 308 (316)
+. .....+...|+|||+|+||+ +||++||+|++||+||+||+|||+|+|.||.+|+|.+|++++||.|++|
T Consensus 62 ~~--~~~~~~~~~V~SPm~Gtv~~-------~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G 132 (140)
T COG0511 62 PA--PAAAAGGTQVTSPMVGTVYK-------PFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYG 132 (140)
T ss_pred CC--ccccccCceEecCcceEEEE-------EeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCC
Confidence 00 00011456899999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcC
Q 021186 309 TPLFVIEP 316 (316)
Q Consensus 309 qpL~~IeP 316 (316)
|+|+.|++
T Consensus 133 ~~L~~I~~ 140 (140)
T COG0511 133 DPLAVIEP 140 (140)
T ss_pred CEEEEecC
Confidence 99999986
No 5
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.67 E-value=1.8e-16 Score=120.87 Aligned_cols=68 Identities=21% Similarity=0.379 Sum_probs=66.2
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.|+||+.|++++ |+|++||+|++||+||.||+||+.++|+||.+|+|.++++++|+.|..|++|++|.
T Consensus 4 ~v~a~~~G~i~~-------~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 4 DVRAEIVASVLE-------VVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred EEeCCCCEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 589999999999 99999999999999999999999999999999999999999999999999999984
No 6
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.67 E-value=4.3e-17 Score=125.54 Aligned_cols=73 Identities=38% Similarity=0.510 Sum_probs=68.0
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
.|++|+.|.+++.. ....|+|++||.|++||+||.||+||+.++|+||++|+|.++++++|+.|.+|++|+.|
T Consensus 2 ~i~~P~~G~~~~~~-~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEG-TITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEE-EEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EEECCCCccEEEec-ceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 48899999888744 66669999999999999999999999999999999999999999999999999999987
No 7
>PRK07051 hypothetical protein; Validated
Probab=99.64 E-value=1.1e-15 Score=119.49 Aligned_cols=76 Identities=45% Similarity=0.823 Sum_probs=73.6
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|+||+.|+|++++.|..++++++||.|++||+|+.||+||+.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999985
No 8
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.63 E-value=1.2e-15 Score=115.66 Aligned_cols=69 Identities=35% Similarity=0.506 Sum_probs=66.8
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|+||+.|+|++ |++++||+|++||+|+.||+||+..+|.++.+|+|.++++++||.|..|++|++|+
T Consensus 2 ~~i~a~~~G~i~~-------~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 2 TKVYASMAGNVWK-------IVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CeEeCCCCEEEEE-------EEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 3689999999999 99999999999999999999999999999999999999999999999999999985
No 9
>PRK06748 hypothetical protein; Validated
Probab=99.61 E-value=2e-15 Score=120.53 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=66.2
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEe-cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA-MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEa-mK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|+|||.|++.+ |++++||.|++||+|++||+ +|.+.+|.||.+|+|.++++++||.|..|++|+.|+
T Consensus 5 ~~v~sp~~G~I~~-------w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~ 74 (83)
T PRK06748 5 EGVYSPCYGKVEK-------LFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVR 74 (83)
T ss_pred eEEecCCcEEEEE-------EEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 3689999999999 99999999999999999999 678899999999999999999999999999999986
No 10
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.59 E-value=1.1e-14 Score=124.85 Aligned_cols=71 Identities=37% Similarity=0.515 Sum_probs=68.1
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+...|++|+.|++.+ |+|++||.|++||+|++||+||+.++|.||++|+|.+++++.||.|..|++|++|.
T Consensus 60 ~~~~v~Ap~~G~V~~-------i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 130 (130)
T PRK06549 60 GADAMPSPMPGTILK-------VLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITIG 130 (130)
T ss_pred CCcEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEeC
Confidence 456899999999999 99999999999999999999999999999999999999999999999999999873
No 11
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.55 E-value=3e-14 Score=124.96 Aligned_cols=70 Identities=34% Similarity=0.573 Sum_probs=67.5
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
+...|+||+.|++.+ |+|++||.|++||+|++||+||+.++|.|+.+|+|.++++++||.|..|++|++|
T Consensus 83 ~~~~v~ap~~G~I~~-------~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 83 GENVVTAPMPGKILR-------ILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCEEECCCCeEEEE-------EEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 345799999999999 9999999999999999999999999999999999999999999999999999987
No 12
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.51 E-value=6.4e-14 Score=102.21 Aligned_cols=67 Identities=39% Similarity=0.630 Sum_probs=64.6
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
.|+||+.|++.+ |++++||.|++||.|+.|+++++..+|+||++|+|.++++++|+.|..|++|+.|
T Consensus 1 ~v~a~~~G~v~~-------~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 1 EVTAPMPGTVVK-------VLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred CccCCccEEEEE-------EEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 378999999998 9999999999999999999999999999999999999999999999999999975
No 13
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.41 E-value=5.6e-13 Score=138.07 Aligned_cols=71 Identities=30% Similarity=0.480 Sum_probs=68.1
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+...|+|||.|++.+ |+|++||.|++||+|++||+|||.++|+||++|+|.++++++|+.|..|++|+.|+
T Consensus 524 ~~~~v~apm~G~V~~-------~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~ 594 (596)
T PRK14042 524 GPGDITVAIPGSIIA-------IHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVE 594 (596)
T ss_pred CCCeEecCcceEEEE-------EEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEe
Confidence 344799999999999 99999999999999999999999999999999999999999999999999999985
No 14
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.35 E-value=2.3e-12 Score=120.54 Aligned_cols=64 Identities=31% Similarity=0.435 Sum_probs=61.4
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 246 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 246 mvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
..|++.+ |+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+.|..|++|+.|++
T Consensus 15 ~~g~~~~-------~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~ 78 (371)
T PRK14875 15 TEGKVAG-------WLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVAD 78 (371)
T ss_pred ceEEEEE-------EEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEec
Confidence 4689999 999999999999999999999999999999999999999999999999999999863
No 15
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=99.34 E-value=2.3e-12 Score=133.44 Aligned_cols=74 Identities=38% Similarity=0.572 Sum_probs=70.5
Q ss_pred CCCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 236 KSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 236 ~~~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..+...|+||+.|+|.+ |+|++||+|++||+|++||+||+.++|+||.+|+|.++++++|+.|.+|++|++|+
T Consensus 519 ~~~~~~V~Ap~~G~v~~-------~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 519 ASAPGAVTSPMPGTVVK-------VKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred CCCCceEeCCCcEEEEE-------EEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 34556899999999999 99999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 021186 316 P 316 (316)
Q Consensus 316 P 316 (316)
|
T Consensus 592 ~ 592 (592)
T PRK09282 592 P 592 (592)
T ss_pred C
Confidence 7
No 16
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.32 E-value=7.7e-12 Score=94.51 Aligned_cols=61 Identities=44% Similarity=0.664 Sum_probs=58.8
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 247 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 247 vGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
.|+++. |++++||.|++||.|+.||+||+..+|+||.+|+|.+++++.|+.|..|++|++|
T Consensus 13 ~g~~~~-------~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 13 DGTVVK-------WLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CEEEEE-------EEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 588888 9999999999999999999999999999999999999999999999999999975
No 17
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.30 E-value=5.3e-12 Score=130.57 Aligned_cols=67 Identities=39% Similarity=0.575 Sum_probs=64.3
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeE
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPL 311 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL 311 (316)
+...|.|||+|++++ |+|++||.|++||+|++||+|||.++|.||.+|+|.++++++|+.|..|++|
T Consensus 516 ~~~~v~ap~~G~v~~-------~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 516 AGTPVTAPIAGSIVK-------VKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred CCCeEeCCccEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 445799999999999 9999999999999999999999999999999999999999999999999976
No 18
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.30 E-value=5.4e-12 Score=130.74 Aligned_cols=70 Identities=34% Similarity=0.607 Sum_probs=67.4
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|+|||.|+|++ |+|++||.|++||+||+||+||+.++|.||.+|+|.++++++|+.|..|++|+.|.
T Consensus 524 ~~~V~Ap~~G~I~~-------~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 524 GEPVTAPLAGNIFK-------VIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred CceEECCccEEEEE-------EEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 45799999999999 99999999999999999999999999999999999999999999999999999873
No 19
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.29 E-value=7.9e-12 Score=138.11 Aligned_cols=73 Identities=32% Similarity=0.521 Sum_probs=69.7
Q ss_pred CCCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 236 KSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 236 ~~~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..+...|.|||.|++++ |+|++||+|++||+|++||+|||.++|.||++|+|+++++++|+.|..||+|+.|+
T Consensus 1129 ~~~~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1129 PEGAEQVESEYAGNFWK-------VLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CCCCcEEeCCceEEEEE-------EEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 34567899999999999 99999999999999999999999999999999999999999999999999999985
No 20
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.28 E-value=6.8e-12 Score=126.69 Aligned_cols=62 Identities=29% Similarity=0.407 Sum_probs=59.8
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 247 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 247 vGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.|+|++ |+|++||.|++||+||+||+||+.++|+||++|+|.+|++++||.|..|++|+.|+
T Consensus 105 eG~I~~-------w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~ 166 (463)
T PLN02226 105 DGTLAT-------FLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIIS 166 (463)
T ss_pred eEEEEE-------EEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEec
Confidence 467888 99999999999999999999999999999999999999999999999999999985
No 21
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.27 E-value=8.5e-12 Score=137.24 Aligned_cols=73 Identities=30% Similarity=0.505 Sum_probs=69.3
Q ss_pred CCCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 236 KSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 236 ~~~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..+...|.|||.|++.. |+|++||.|++||+|++||+|||.++|.||.+|+|.++++++|+.|+.|++|+.|+
T Consensus 1071 ~~~~~~I~a~~~G~v~~-------~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1071 PGNPAHVGAPMPGVIIE-------VKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred cccCceeecCCCcEEEE-------EEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 34556899999999999 99999999999999999999999999999999999999999999999999999985
No 22
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.26 E-value=9.4e-12 Score=127.39 Aligned_cols=73 Identities=34% Similarity=0.506 Sum_probs=69.3
Q ss_pred CCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 237 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 237 ~~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
.....+.|||.|++.. +.|++|+.|.+||+|+++|+|||.+.|+||.+|+|.++.+++|+.|..|++|++|++
T Consensus 573 ~~~~~l~aPMpG~v~~-------v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~~ 645 (645)
T COG4770 573 ASSGELLAPMPGTVVS-------VAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE 645 (645)
T ss_pred CCCCceecCCCceEEE-------EEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEecC
Confidence 3445899999999999 899999999999999999999999999999999999999999999999999999975
No 23
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.24 E-value=1.4e-11 Score=135.55 Aligned_cols=72 Identities=32% Similarity=0.502 Sum_probs=69.2
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
+...|.|||.|++.+ ++|++||.|++||+|++||+|||.++|+||.+|+|.++++++|+.|+.|+.|+.|++
T Consensus 1075 ~~~~v~apm~G~v~~-------i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~~ 1146 (1146)
T PRK12999 1075 NPGHVGAPMPGSVVT-------VLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELEP 1146 (1146)
T ss_pred CCceEeCCceEEEEE-------EEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEcC
Confidence 445799999999999 999999999999999999999999999999999999999999999999999999986
No 24
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.23 E-value=2e-11 Score=122.00 Aligned_cols=62 Identities=42% Similarity=0.579 Sum_probs=60.1
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 247 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 247 vGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|++|+
T Consensus 58 eg~I~~-------w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~ 119 (418)
T PTZ00144 58 EGTVVE-------WKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEID 119 (418)
T ss_pred eEEEEE-------EEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEc
Confidence 578888 99999999999999999999999999999999999999999999999999999985
No 25
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=99.17 E-value=4.5e-11 Score=118.83 Aligned_cols=62 Identities=34% Similarity=0.493 Sum_probs=60.1
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 247 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 247 vGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
-|++.+ |++++||.|++||+|++||++|..++|.||++|+|.+|++++|+.|..|++|++|.
T Consensus 16 EG~I~~-------W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~ 77 (404)
T COG0508 16 EGTIVE-------WLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIE 77 (404)
T ss_pred eEEEEE-------EecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEe
Confidence 588888 99999999999999999999999999999999999999999999999999999985
No 26
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.17 E-value=2.9e-11 Score=127.59 Aligned_cols=77 Identities=35% Similarity=0.505 Sum_probs=72.3
Q ss_pred CCCCCCCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeE
Q 021186 232 GKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPL 311 (316)
Q Consensus 232 ~~~~~~~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL 311 (316)
.+++.++...|.|||.|.+.. +.|+.||+|++||+|++||+|||...|.||.+|+|.+++|.+||.|+.|+.|
T Consensus 1072 ~KAd~~Np~higApmpG~Vv~-------v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLL 1144 (1149)
T COG1038 1072 RKADPGNPGHIGAPMPGVVVE-------VKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLL 1144 (1149)
T ss_pred cccCCCCccccCCCCCCceEE-------EEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceE
Confidence 355667778999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred EEEc
Q 021186 312 FVIE 315 (316)
Q Consensus 312 ~~Ie 315 (316)
..++
T Consensus 1145 i~~~ 1148 (1149)
T COG1038 1145 VVVE 1148 (1149)
T ss_pred EEcc
Confidence 9875
No 27
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.14 E-value=9.4e-11 Score=116.63 Aligned_cols=62 Identities=34% Similarity=0.407 Sum_probs=60.4
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 247 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 247 vGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|++|+
T Consensus 16 eg~i~~-------w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~ 77 (407)
T PRK05704 16 EATIAT-------WHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRID 77 (407)
T ss_pred eEEEEE-------EEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 589999 99999999999999999999999999999999999999999999999999999986
No 28
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=99.07 E-value=3e-10 Score=113.03 Aligned_cols=62 Identities=27% Similarity=0.391 Sum_probs=60.3
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 247 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 247 vGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.|++++ |+|++||.|++||+||+||+||+.++|+|+++|+|.++++++|+.|..|++|++|+
T Consensus 14 eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~ 75 (403)
T TIGR01347 14 EGTVAE-------WHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILE 75 (403)
T ss_pred eEEEEE-------EEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 489999 99999999999999999999999999999999999999999999999999999986
No 29
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.02 E-value=5.4e-10 Score=115.82 Aligned_cols=62 Identities=29% Similarity=0.418 Sum_probs=59.8
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 247 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 247 vGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.|++++ |+|++||.|++||.||+||+||+.++|.|+++|+|.+|++++|+.|..|++|++|+
T Consensus 149 eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~ 210 (590)
T TIGR02927 149 EGTITQ-------WLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIG 210 (590)
T ss_pred eEEEEE-------EEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 577888 99999999999999999999999999999999999999999999999999999985
No 30
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.01 E-value=5e-10 Score=116.78 Aligned_cols=63 Identities=29% Similarity=0.293 Sum_probs=59.4
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 246 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 246 mvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.-|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.+|++++|+.|..|++|+.|.
T Consensus 217 ~eg~v~~-------w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~ 279 (633)
T PRK11854 217 DEVEVTE-------VMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFE 279 (633)
T ss_pred cceEEEE-------EEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 3566666 99999999999999999999999999999999999999999999999999999985
No 31
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.97 E-value=1.2e-09 Score=113.99 Aligned_cols=63 Identities=25% Similarity=0.320 Sum_probs=60.2
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 246 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 246 mvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|++.+ |+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 13 ~eg~i~~-------~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~ 75 (633)
T PRK11854 13 DEVEVTE-------ILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFE 75 (633)
T ss_pred ceEEEEE-------EEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEe
Confidence 3578888 99999999999999999999999999999999999999999999999999999986
No 32
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.95 E-value=1.3e-09 Score=112.14 Aligned_cols=74 Identities=23% Similarity=0.282 Sum_probs=64.7
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|+-|..|. .. ......|+|++||.|++||.||+||+||+.++|+||++|+|.+++++.|+.|..|++|+.|.
T Consensus 117 ~~~~~P~~g~-~~-eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 190 (546)
T TIGR01348 117 QEVTVPDIGD-IE-KVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLS 190 (546)
T ss_pred eEEeCCCCCC-cc-eeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEe
Confidence 4677777665 22 23444599999999999999999999999999999999999999999999999999999985
No 33
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.91 E-value=2.3e-09 Score=109.90 Aligned_cols=74 Identities=34% Similarity=0.350 Sum_probs=64.4
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|+-|..|. +. ......|+|++||.|++||.||.||+||+.++|+||++|+|.++++++|+.|..|++|+.|.
T Consensus 120 ~~~~~P~~g~-~~-eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~ 193 (547)
T PRK11855 120 VEVKVPDIGE-IT-EVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIE 193 (547)
T ss_pred eEEecCCCCC-cc-eeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 4566666655 32 34444499999999999999999999999999999999999999999999999999999985
No 34
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.90 E-value=8e-09 Score=73.81 Aligned_cols=64 Identities=34% Similarity=0.476 Sum_probs=60.8
Q ss_pred CCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 244 CPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 244 APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
++..|++.. |+++.|+.|..|+.|+.++++++...+.++.+|+|.+..+.+|+.+..|++|++|
T Consensus 11 ~~~~g~i~~-------~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 11 SMTEGTIVE-------WLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCcEEEEEE-------EEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 566799998 9999999999999999999999999999999999999999999999999999975
No 35
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=98.89 E-value=3.8e-09 Score=105.43 Aligned_cols=62 Identities=31% Similarity=0.363 Sum_probs=59.8
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 247 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 247 vGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
-|++.+ |+|++||.|++||+||.||+||+.+++.++++|+|.++++++|+.|..|++|+.|+
T Consensus 12 eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 73 (416)
T PLN02528 12 ECELLR-------WFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIM 73 (416)
T ss_pred EEEEEE-------EEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 388988 99999999999999999999999999999999999999999999999999999885
No 36
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.88 E-value=2.8e-09 Score=111.38 Aligned_cols=75 Identities=27% Similarity=0.339 Sum_probs=70.5
Q ss_pred CCCCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 235 VKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 235 ~~~~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
.......|.|||.|++.. +.|++|++|+|||+||.+.+|||.+-|.+|.+|+|+++.+.+|+.|+.|+.++.|
T Consensus 1102 ~~~~~g~igAPMpG~vie-------ikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~ 1174 (1176)
T KOG0369|consen 1102 DPGVKGHIGAPMPGTVIE-------IKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVEL 1174 (1176)
T ss_pred CCCCcccccCCCCCceEE-------EEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEc
Confidence 345567899999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 021186 315 EP 316 (316)
Q Consensus 315 eP 316 (316)
++
T Consensus 1175 E~ 1176 (1176)
T KOG0369|consen 1175 EH 1176 (1176)
T ss_pred cC
Confidence 85
No 37
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=98.87 E-value=1e-09 Score=107.85 Aligned_cols=57 Identities=33% Similarity=0.451 Sum_probs=56.1
Q ss_pred CCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 260 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
|+.++||+|++++.||.||++|...+|.||.+|+|++++|++||.|+.||.|+.|+|
T Consensus 92 ~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 92 WLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred HhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence 999999999999999999999999999999999999999999999999999999976
No 38
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.81 E-value=1e-08 Score=105.50 Aligned_cols=66 Identities=27% Similarity=0.335 Sum_probs=62.4
Q ss_pred cCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 243 KCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 243 ~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..+..|++.+ |+|++||.|++||+||+||+||+.++|.++++|+|.+++++.|+.|..|++|++|+
T Consensus 9 g~~~~g~i~~-------~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~ 74 (546)
T TIGR01348 9 GDNEEGEVIE-------VLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLE 74 (546)
T ss_pred CCCCceEEEE-------EEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEe
Confidence 3346799999 99999999999999999999999999999999999999999999999999999985
No 39
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=98.79 E-value=1.4e-08 Score=100.43 Aligned_cols=63 Identities=35% Similarity=0.485 Sum_probs=60.5
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 246 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 246 mvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|++.+ |+|++||.|++||+||.||++|+.++|+||++|+|.++++++|+.|..|++|+.|.
T Consensus 15 ~~g~i~~-------w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~ 77 (411)
T PRK11856 15 TEGEIVE-------WLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIE 77 (411)
T ss_pred ceEEEEE-------EEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEe
Confidence 4688988 99999999999999999999999999999999999999999999999999999985
No 40
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.78 E-value=1.4e-08 Score=104.23 Aligned_cols=62 Identities=34% Similarity=0.331 Sum_probs=59.9
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 247 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 247 vGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.|++.. |+|++||.|++||+||.||+||+.++|+|+++|+|.++++++|+.|..|++|+.|+
T Consensus 15 ~g~i~~-------~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~ 76 (547)
T PRK11855 15 EVEVIE-------WLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIE 76 (547)
T ss_pred eEEEEE-------EEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEec
Confidence 588888 99999999999999999999999999999999999999999999999999999886
No 41
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=98.75 E-value=1.5e-08 Score=104.36 Aligned_cols=61 Identities=30% Similarity=0.467 Sum_probs=58.4
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEE
Q 021186 247 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVI 314 (316)
Q Consensus 247 vGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd-~V~~GqpL~~I 314 (316)
.|++.+ |++++||.|++||+||.||++|..++|.++.+|+|.+|++++|+ .|..|++|++|
T Consensus 126 eg~I~~-------W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i 187 (539)
T PLN02744 126 EGNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAIT 187 (539)
T ss_pred eeEEEE-------EEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEE
Confidence 478888 99999999999999999999999999999999999999999996 89999999987
No 42
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=98.75 E-value=1.8e-08 Score=101.21 Aligned_cols=63 Identities=30% Similarity=0.457 Sum_probs=60.2
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCc-cCCCCeEEEEc
Q 021186 246 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP-VSVDTPLFVIE 315 (316)
Q Consensus 246 mvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~-V~~GqpL~~Ie 315 (316)
..|++.+ |++++||.|++||+||.||++|+.++|.|+.+|+|.++++++|+. |..|++|++|+
T Consensus 12 ~eg~i~~-------w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~ 75 (435)
T TIGR01349 12 TTGNLAK-------WLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLV 75 (435)
T ss_pred ceEEEEE-------EEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEe
Confidence 3578888 999999999999999999999999999999999999999999999 99999999984
No 43
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.67 E-value=1.7e-08 Score=103.00 Aligned_cols=69 Identities=29% Similarity=0.466 Sum_probs=66.4
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..+.+||.|.+.. .+|+.||.|++||.|+.+++|||.+-++||.+|+|..+.++.|+.|..|.+|++++
T Consensus 602 ~v~~aPMpG~Iek-------v~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 602 GVIVAPMPGIIEK-------VLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CceecCCCCeeee-------eeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 4689999999998 99999999999999999999999999999999999999999999999999999874
No 44
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=98.65 E-value=3e-08 Score=99.82 Aligned_cols=62 Identities=31% Similarity=0.453 Sum_probs=59.7
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCC-CccCCCCeEEEEc
Q 021186 247 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDR-KPVSVDTPLFVIE 315 (316)
Q Consensus 247 vGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~G-d~V~~GqpL~~Ie 315 (316)
-|.|.+ |..++||.+.+||+||+||++|..+++++..+|.+.+|++++| ..|..|.+|+.|-
T Consensus 52 eGnIvs-------W~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 52 EGNIVS-------WKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCceee-------EeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 589999 9999999999999999999999999999999999999999999 8999999999874
No 45
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=98.65 E-value=5.2e-08 Score=98.78 Aligned_cols=62 Identities=35% Similarity=0.497 Sum_probs=59.0
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEEc
Q 021186 247 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVIE 315 (316)
Q Consensus 247 vGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd-~V~~GqpL~~Ie 315 (316)
.|++.+ |+|++||.|++||+|+.||++|+.++|.|+.+|+|.+++++.|+ .|..|++|++|+
T Consensus 16 eg~i~~-------w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~ 78 (464)
T PRK11892 16 EGTLAK-------WLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLL 78 (464)
T ss_pred eeEEEE-------EEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEc
Confidence 478888 99999999999999999999999999999999999999999995 799999999985
No 46
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.61 E-value=6.4e-08 Score=100.55 Aligned_cols=63 Identities=27% Similarity=0.354 Sum_probs=59.9
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 246 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 246 mvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|++++ |+|++||.|++||+||.||+||+.++|.|+.+|+|.++++++|+.|..|+.|+.|+
T Consensus 15 ~eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~ 77 (590)
T TIGR02927 15 TEGTITQ-------WLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIG 77 (590)
T ss_pred cEEEEEE-------EEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEe
Confidence 4578888 99999999999999999999999999999999999999999999999999999874
No 47
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=98.38 E-value=5.1e-07 Score=85.35 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=30.6
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
..|+||++|+|.++.++.|+.|..|++|+.|.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~ 237 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVP 237 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEc
Confidence 468999999999999999999999999999854
No 48
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=98.37 E-value=9.5e-07 Score=87.62 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=61.5
Q ss_pred CCCccCCcCeEEEcCCCCCCCCC-ccCCCEEecCCeEEEEEec-------------------------------------
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPF-VKVGDRVQKGQVLCIIEAM------------------------------------- 280 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~-VkvGD~VkkGqvL~iIEam------------------------------------- 280 (316)
...|.+++.|.+.+ .+ +++||.|++||+|+.|+.-
T Consensus 123 ~~~v~arv~G~V~~-------l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~ 195 (409)
T PRK09783 123 YAIVQARAAGFIDK-------VYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEA 195 (409)
T ss_pred eEEEeCCcCEEEEE-------EEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHH
Confidence 35799999999998 77 8999999999999999821
Q ss_pred -----------ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 281 -----------KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 281 -----------K~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.....|+||++|+|.++.++.|+.|..|++||+|.
T Consensus 196 ~i~~l~~~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~ 241 (409)
T PRK09783 196 DIRRLIATRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ 241 (409)
T ss_pred HHHHHHHcCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEE
Confidence 12357999999999999999999999999999983
No 49
>PRK01202 glycine cleavage system protein H; Provisional
Probab=98.33 E-value=1.2e-06 Score=74.61 Aligned_cols=56 Identities=32% Similarity=0.560 Sum_probs=50.0
Q ss_pred CccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEE---ecCCCCccC---CCC-eEEEEcC
Q 021186 261 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEI---IAEDRKPVS---VDT-PLFVIEP 316 (316)
Q Consensus 261 ~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eI---lVe~Gd~V~---~Gq-pL~~IeP 316 (316)
+.++|++|++||+++.||++|...+|.||++|+|+++ +.++.+.+. +|+ -|++|++
T Consensus 44 lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~ 106 (127)
T PRK01202 44 LPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKP 106 (127)
T ss_pred cCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEe
Confidence 3468999999999999999999999999999999999 677778888 876 8998864
No 50
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=98.28 E-value=1e-06 Score=84.59 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=30.3
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
..|+||++|+|.++.++.|+.|..|++|+.|.+
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~ 241 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLID 241 (346)
T ss_pred CEEECCCCcEEEeeecCCCCCcCCCCeEEEEec
Confidence 468899999999999999999999999999853
No 51
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.25 E-value=1.7e-06 Score=69.75 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=48.8
Q ss_pred cCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCc
Q 021186 243 KCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP 304 (316)
Q Consensus 243 ~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~ 304 (316)
...+.|.++.. ++.++|+.|++||.||.||++|...+|.||.+|+|.+++.+.++.
T Consensus 24 ~~~~lG~i~~i------~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 24 AQDLLGDIVFV------ELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred HHhhCCCEEEE------EecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 34567887774 678889999999999999999999999999999999998877654
No 52
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=98.20 E-value=1.7e-06 Score=80.35 Aligned_cols=69 Identities=30% Similarity=0.356 Sum_probs=61.1
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecce-------------------------------------
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL------------------------------------- 282 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~------------------------------------- 282 (316)
..|.+|..|++.. ++|++||.|++||+|+.|+...+
T Consensus 27 ~~v~a~~~G~V~~-------i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~ 99 (322)
T TIGR01730 27 ADLAAEVAGKITK-------ISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAV 99 (322)
T ss_pred EEEEccccEEEEE-------EEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 5799999999998 89999999999999999964211
Q ss_pred ----------------------------------eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 283 ----------------------------------MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 283 ----------------------------------~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|+||++|+|..+.++.|+.|..|++|+.|.
T Consensus 100 s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~ 166 (322)
T TIGR01730 100 SQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIV 166 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEE
Confidence 246999999999999999999999999999874
No 53
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=98.14 E-value=3.8e-06 Score=80.43 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=60.9
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecc-------------------------------------
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK------------------------------------- 281 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK------------------------------------- 281 (316)
...|.++..|++.. ++|++||.|++||+|+.|+...
T Consensus 47 ~v~i~~~v~G~V~~-------v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~ai 119 (310)
T PRK10559 47 VVAIAPDVSGLITQ-------VNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAM 119 (310)
T ss_pred EEEEccCCceEEEE-------EEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 35799999999999 8999999999999999997521
Q ss_pred ---------------------------------eeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 282 ---------------------------------LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 282 ---------------------------------~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
-...|+||++|+|.++.++.|+.|..|++|+.|
T Consensus 120 S~~~~d~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~I 185 (310)
T PRK10559 120 SREEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVAL 185 (310)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEE
Confidence 024688999999999999999999999999987
No 54
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=98.11 E-value=2.9e-06 Score=83.60 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=30.1
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|+||++|+|..+.++.|+.|..|++|+.|.
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv 247 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVV 247 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEE
Confidence 47999999999999999999999999999885
No 55
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=98.08 E-value=5e-06 Score=81.13 Aligned_cols=70 Identities=24% Similarity=0.346 Sum_probs=60.1
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecce------------------------------------
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL------------------------------------ 282 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~------------------------------------ 282 (316)
...|.+++.|++.. ++|++||.|++||+|+.|+...+
T Consensus 63 ~~~l~~~v~G~V~~-------v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~ 135 (385)
T PRK09578 63 QAEVRARVAGIVTA-------RTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRA 135 (385)
T ss_pred EEEEeccCcEEEEE-------EECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35799999999998 89999999999999999975211
Q ss_pred -----------------------------------eeEEecCCCeEEEEEecCCCCccCCC--CeEEEEc
Q 021186 283 -----------------------------------MNEIEADRSGTIVEIIAEDRKPVSVD--TPLFVIE 315 (316)
Q Consensus 283 -----------------------------------~~eI~Ap~sGtV~eIlVe~Gd~V~~G--qpL~~Ie 315 (316)
...|+||++|+|.+++++.|+.|..| ++|+.|.
T Consensus 136 iS~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~ 205 (385)
T PRK09578 136 VSERDYTEAVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVE 205 (385)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEE
Confidence 24789999999999999999999885 5898873
No 56
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=98.07 E-value=5.7e-06 Score=78.94 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=30.1
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|+||++|+|..+.++.|+.|..|++|+.|.
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~ 235 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLS 235 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEe
Confidence 47999999999999999999999999999884
No 57
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=98.06 E-value=5.1e-06 Score=92.83 Aligned_cols=71 Identities=24% Similarity=0.416 Sum_probs=66.3
Q ss_pred CCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 237 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 237 ~~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.+...+++|..|++.+ +.|+.|++|.+||+-++||.|||.+++.|..+|+|. ...++|+.+++|+.|+.+.
T Consensus 683 nDpt~LrsPs~GKLl~-------ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~-~i~~~G~~i~aG~vlakL~ 753 (2196)
T KOG0368|consen 683 NDPTVLRSPSPGKLLQ-------YLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQ-LIKQEGDAIEAGSVLAKLT 753 (2196)
T ss_pred CCcceecCCCCccceE-------EEecCCCceecCCeeeehehhheeeeeeccCCceEE-EecCCCCccCccceeEEee
Confidence 4556899999999999 999999999999999999999999999999999987 7789999999999999874
No 58
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=98.03 E-value=2.1e-06 Score=84.66 Aligned_cols=58 Identities=28% Similarity=0.371 Sum_probs=55.6
Q ss_pred CCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 258 EPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 258 ~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.+|||++||.|..=|.||+++.+|....|.+-++|+|++|..+.+|....|++|..++
T Consensus 82 keWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~e 139 (474)
T KOG0558|consen 82 KEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLE 139 (474)
T ss_pred eeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeee
Confidence 3499999999999999999999999999999999999999999999999999999875
No 59
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=98.00 E-value=2.1e-05 Score=74.68 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=59.5
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
...|+||..|.|.. +++.||.|+|||+|+.|.. .+|+||.+|+|. =++.+|-.|..|.-|..|.|
T Consensus 164 Er~IrAp~~Gi~~~--------~~~IGd~V~KGqvLa~I~~----~~V~APidGIVr-GlirdG~~V~~G~Ki~dIDP 228 (256)
T TIGR03309 164 ERVLRAPADGIVTP--------TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLR-GLIHEGLTVTEGLKIGDVDP 228 (256)
T ss_pred eEEEECCCCeEEee--------ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEE-EEecCCCCcCCCCEEEEECC
Confidence 45899999999986 8999999999999999985 799999999987 66789999999999999987
No 60
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.96 E-value=1.2e-05 Score=78.49 Aligned_cols=69 Identities=14% Similarity=0.238 Sum_probs=59.6
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecc-------------------------------------
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK------------------------------------- 281 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK------------------------------------- 281 (316)
...|.+++.|++.+ .+|++||.|++||+|+.|+...
T Consensus 61 ~~~l~~~v~G~V~~-------i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~ 133 (385)
T PRK09859 61 VAEIRPQVGGIIIK-------RNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNY 133 (385)
T ss_pred EEEEeccCcEEEEE-------EEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35799999999998 8999999999999999997420
Q ss_pred ----------------------------------eeeEEecCCCeEEEEEecCCCCccCCCC--eEEEE
Q 021186 282 ----------------------------------LMNEIEADRSGTIVEIIAEDRKPVSVDT--PLFVI 314 (316)
Q Consensus 282 ----------------------------------~~~eI~Ap~sGtV~eIlVe~Gd~V~~Gq--pL~~I 314 (316)
-...|+||++|+|.+++++.|+.|..|+ +|+.|
T Consensus 134 is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i 202 (385)
T PRK09859 134 VSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTV 202 (385)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEE
Confidence 1257999999999999999999999985 68876
No 61
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.93 E-value=1.5e-05 Score=66.80 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=37.6
Q ss_pred CccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCC
Q 021186 261 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDR 302 (316)
Q Consensus 261 ~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~G 302 (316)
+-++|+.|++||.|+.||++|...+|.||.+|+|.+++.+..
T Consensus 37 lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~ 78 (110)
T TIGR03077 37 LPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALE 78 (110)
T ss_pred CCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhh
Confidence 457899999999999999999999999999999999954433
No 62
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.89 E-value=8.3e-06 Score=80.24 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=59.8
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecc------------------------------------
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK------------------------------------ 281 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK------------------------------------ 281 (316)
....|.+.+.|++.. .+|++||.|++||+|+.|+...
T Consensus 64 ~~~~l~a~vsG~V~~-------v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g 136 (397)
T PRK15030 64 RIAEVRPQVSGIILK-------RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQ 136 (397)
T ss_pred EEEEEEecCcEEEEE-------EEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 345799999999998 8999999999999999997421
Q ss_pred -----------------------------------eeeEEecCCCeEEEEEecCCCCccCCCCe--EEEE
Q 021186 282 -----------------------------------LMNEIEADRSGTIVEIIAEDRKPVSVDTP--LFVI 314 (316)
Q Consensus 282 -----------------------------------~~~eI~Ap~sGtV~eIlVe~Gd~V~~Gqp--L~~I 314 (316)
-...|+||++|+|.++.++.|+.|..|++ |+.|
T Consensus 137 ~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i 206 (397)
T PRK15030 137 YISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATV 206 (397)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEE
Confidence 02468899999999999999999999985 7765
No 63
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.86 E-value=2e-05 Score=68.78 Aligned_cols=57 Identities=23% Similarity=0.322 Sum_probs=47.9
Q ss_pred CCccCCcCeEEEcCCCCCCCCCc-cCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCC
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFV-KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 303 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~V-kvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd 303 (316)
......+.|.+.. +.+ ++|++|++||.++.||++|+..+|.||.+|+|++++.+-.+
T Consensus 36 td~aq~~lG~I~~-------v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~ 93 (144)
T PRK13380 36 TDYAQTMAGDVVF-------VRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED 93 (144)
T ss_pred CHHHHHhcCCEEE-------EEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence 3456678888776 344 58999999999999999999999999999999999876444
No 64
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.85 E-value=2.8e-05 Score=66.40 Aligned_cols=41 Identities=32% Similarity=0.409 Sum_probs=37.2
Q ss_pred cCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCC
Q 021186 263 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 303 (316)
Q Consensus 263 kvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd 303 (316)
++|++|++||++|.||++|...+|.||++|+|++++-+--+
T Consensus 45 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~ 85 (127)
T TIGR00527 45 EVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALED 85 (127)
T ss_pred CCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhh
Confidence 58999999999999999999999999999999998755443
No 65
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.83 E-value=2.4e-05 Score=75.95 Aligned_cols=70 Identities=20% Similarity=0.332 Sum_probs=59.5
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecce-----------------------------------
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL----------------------------------- 282 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~----------------------------------- 282 (316)
....|.+++.|.+.. ++|++||.|++||+|+.|+....
T Consensus 60 ~~~~l~a~~~G~V~~-------v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~ 132 (370)
T PRK11578 60 RKVDVGAQVSGQLKT-------LSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQ 132 (370)
T ss_pred eEEEEecccceEEEE-------EEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999998 89999999999999999986210
Q ss_pred --------------------------------------------------eeEEecCCCeEEEEEecCCCCccCCC---C
Q 021186 283 --------------------------------------------------MNEIEADRSGTIVEIIAEDRKPVSVD---T 309 (316)
Q Consensus 283 --------------------------------------------------~~eI~Ap~sGtV~eIlVe~Gd~V~~G---q 309 (316)
...|+||++|+|.++.++.|+.|..| +
T Consensus 133 ~~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~ 212 (370)
T PRK11578 133 QRLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAP 212 (370)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCc
Confidence 13799999999999999999999776 4
Q ss_pred eEEEE
Q 021186 310 PLFVI 314 (316)
Q Consensus 310 pL~~I 314 (316)
+|+.|
T Consensus 213 ~l~~i 217 (370)
T PRK11578 213 NILTL 217 (370)
T ss_pred eEEEE
Confidence 78876
No 66
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.78 E-value=3.1e-05 Score=77.05 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=60.4
Q ss_pred CCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecc-----------------------------------
Q 021186 237 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK----------------------------------- 281 (316)
Q Consensus 237 ~~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK----------------------------------- 281 (316)
.+...|.+++.|++.. +++++||.|++||+|+.|+...
T Consensus 85 ~~~v~v~~~vsG~V~~-------i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~ 157 (415)
T PRK11556 85 ANTVTVRSRVDGQLMA-------LHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKT 157 (415)
T ss_pred eeEEEEEccccEEEEE-------EECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456899999999998 8999999999999999996421
Q ss_pred ------------------------------------eeeEEecCCCeEEEEEecCCCCccCCCC--eEEEE
Q 021186 282 ------------------------------------LMNEIEADRSGTIVEIIAEDRKPVSVDT--PLFVI 314 (316)
Q Consensus 282 ------------------------------------~~~eI~Ap~sGtV~eIlVe~Gd~V~~Gq--pL~~I 314 (316)
-...|+||++|+|..+.++.|+.|..|+ +|+.|
T Consensus 158 g~is~~~ld~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i 228 (415)
T PRK11556 158 NLVSRQELDAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVI 228 (415)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEE
Confidence 0347999999999999999999999984 67765
No 67
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.77 E-value=4.6e-05 Score=64.29 Aligned_cols=38 Identities=32% Similarity=0.482 Sum_probs=35.7
Q ss_pred CccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEe
Q 021186 261 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII 298 (316)
Q Consensus 261 ~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIl 298 (316)
+-++|+.|++||.||.||++|...+|.||++|+|.+++
T Consensus 39 lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 39 LPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred CCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 44789999999999999999999999999999999994
No 68
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=97.66 E-value=2.4e-05 Score=72.85 Aligned_cols=33 Identities=36% Similarity=0.584 Sum_probs=23.7
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEe
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEa 279 (316)
...|.++..|++ . ++|++||+|++||+|+.|+.
T Consensus 21 ~~~v~~~~~G~v-~-------~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 21 EVSVSAPVSGRV-S-------VNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp EEEE--SS-EEE-E-------E-S-TTSEEETT-EEEEEE-
T ss_pred EEEEECCCCEEE-E-------EEeCCcCEECCCCEEEEEEC
Confidence 357999999999 8 99999999999999999873
No 69
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=97.65 E-value=9.4e-05 Score=70.19 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=31.4
Q ss_pred CCCccCCcC---eEEEcCCCCCCCCCccCCCEEecCCeEEEEEec
Q 021186 239 LPPLKCPMA---GTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 239 ~~~V~APmv---Gtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
...|.++.. |++.+ ++|++||.|++||+|+.|+..
T Consensus 13 ~~~v~~~~~~~~G~V~~-------i~V~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 13 VVAVAAPSSGGTDRIKK-------LLVAEGDRVQAGQVLAELDSR 50 (327)
T ss_pred eEEecCCCCCCCcEEEE-------EEccCCCEecCCcEEEEecCc
Confidence 347899999 99999 999999999999999999853
No 70
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.63 E-value=0.0001 Score=53.08 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=30.4
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|.++.+|+|.+++|++|+.|..|++|++|.
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld 34 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLD 34 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEEC
Confidence 56899999999999999999999999999986
No 71
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.52 E-value=7.5e-05 Score=53.82 Aligned_cols=36 Identities=31% Similarity=0.624 Sum_probs=32.4
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecce
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL 282 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~ 282 (316)
..|.+|+.|++.. ++|++||.|++||+|+.|+....
T Consensus 3 ~~I~~~~~G~V~~-------v~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 3 VTIQAPVSGRVES-------VYVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred EEEeCCCCEEEEE-------EEecCCCEEcCCCEEEEECcHHH
Confidence 3689999999999 99999999999999999987554
No 72
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.45 E-value=0.00049 Score=66.03 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=57.1
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEe---cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA---MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEa---mK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
...|+||..|.|+. .++.||.|++||+|+.|-. +....+|+||.+|+|.-+. ..-.|..|+.|+.|
T Consensus 229 ~~~v~A~~~Gl~~~--------~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~v~~G~~l~~i 297 (298)
T cd06253 229 VVYVNAETSGIFVP--------AKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPLVYEGSLVARI 297 (298)
T ss_pred eEEEEcCCCeEEEE--------CcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCeecCCceEEEe
Confidence 45899999999986 7999999999999999965 3467899999999998655 55689999999987
No 73
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.42 E-value=0.0003 Score=67.92 Aligned_cols=33 Identities=30% Similarity=0.465 Sum_probs=29.9
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEE
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE 278 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIE 278 (316)
...|.++..|++.. ++|++||.|++||+|+.++
T Consensus 43 ~~~v~~~~~G~v~~-------i~V~eG~~V~kG~~L~~ld 75 (423)
T TIGR01843 43 VKVVQHLEGGIVRE-------ILVREGDRVKAGQVLVELD 75 (423)
T ss_pred eeecccCCCcEEEE-------EEeCCCCEecCCCeEEEEc
Confidence 34689999999999 9999999999999999885
No 74
>PRK12784 hypothetical protein; Provisional
Probab=97.41 E-value=0.00052 Score=54.87 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=63.4
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecc-eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK-LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK-~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|.||.-|++.+ .||.++++|-+.+.|+.|+.|. .+-.|.-.++|.|.-+.|+.||.|..++.|+.++
T Consensus 6 e~iyS~~~G~Vek-------ifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~e 75 (84)
T PRK12784 6 EEICSSYEGKVEE-------IFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLE 75 (84)
T ss_pred hhhcCccccEEEE-------EEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEe
Confidence 3689999999999 8999999999999999999976 4556888999999999999999999999999886
No 75
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.31 E-value=0.0009 Score=63.64 Aligned_cols=65 Identities=29% Similarity=0.418 Sum_probs=54.4
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEec--ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM--KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEam--K~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
..|+||..|.|+. .++.||.|++||+|+.|... ....+|+||.+|+|.-+. ..-.|..|+.|+.|
T Consensus 220 ~~v~A~~~G~~~~--------~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~v~~G~~l~~i 286 (287)
T cd06251 220 VWVRAPQGGLLRS--------LVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPLVNEGDALFHI 286 (287)
T ss_pred eEEecCCCeEEEE--------ecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCccCCCCEEEEe
Confidence 4799999999985 89999999999999999652 334789999999996544 55679999999886
No 76
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.24 E-value=0.0012 Score=63.67 Aligned_cols=66 Identities=27% Similarity=0.245 Sum_probs=55.5
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEec----ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM----KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEam----K~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|+||..|.|+. +++.||.|++||+|+.|-.. ....+|+||.+|+|.-+. ..-.|..|+.|+.|-
T Consensus 245 ~~v~A~~~G~~~~--------~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~~v~~G~~l~~i~ 314 (316)
T cd06252 245 CYVFAPHPGLFEP--------LVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPGLVRRGDCLAVLA 314 (316)
T ss_pred EEEEcCCCeEEEE--------ecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCCccCCCCEEEEEe
Confidence 5799999999985 89999999999999999663 457789999999988554 335689999999874
No 77
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=97.11 E-value=0.0018 Score=63.14 Aligned_cols=65 Identities=18% Similarity=0.143 Sum_probs=55.6
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEe----cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA----MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEa----mK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
..|+||..|.|+. .++.||.|++||+|+.|-. .....+|+||.+|+|..+. ..-.|..|+.|+.|
T Consensus 256 ~~v~Ap~~Gi~~~--------~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 256 CFIFAEDDGLIEF--------MIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGLIKSGDCIAVL 324 (325)
T ss_pred eEEEcCCCeEEEE--------ecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCccCCCCEEEEe
Confidence 4799999999985 8999999999999999965 3357889999999998754 55689999999876
No 78
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=97.08 E-value=0.0015 Score=64.43 Aligned_cols=67 Identities=27% Similarity=0.235 Sum_probs=54.4
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEe----cceeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA----MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV 313 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEa----mK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~ 313 (316)
+...|+||..|.|+. +++.||.|++||+|+.|-. .....+|+||.+|+|.-+. ..-.|..|+.|+.
T Consensus 288 ~~~~v~Ap~~Gl~~~--------~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~--~~~~V~~G~~l~~ 357 (359)
T cd06250 288 GVEMLYAPAGGMVVY--------RAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA--SRRFVRAGDELAK 357 (359)
T ss_pred CcEEEeCCCCeEEEE--------ecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec--CCccccCCCeEEE
Confidence 345799999999985 8999999999999999954 1223336999999987654 6678999999998
Q ss_pred E
Q 021186 314 I 314 (316)
Q Consensus 314 I 314 (316)
|
T Consensus 358 I 358 (359)
T cd06250 358 I 358 (359)
T ss_pred e
Confidence 7
No 79
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=97.06 E-value=0.0008 Score=51.20 Aligned_cols=32 Identities=13% Similarity=0.447 Sum_probs=30.0
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
-.|+||++|+|.++++++||.|+.||+|+.|+
T Consensus 3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve 34 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLE 34 (71)
T ss_pred cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 45999999999999999999999999999885
No 80
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=96.98 E-value=0.0016 Score=55.11 Aligned_cols=40 Identities=35% Similarity=0.562 Sum_probs=32.9
Q ss_pred CccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecC
Q 021186 261 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAE 300 (316)
Q Consensus 261 ~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe 300 (316)
+-++|++|++|+.++.||+.|...++.+|++|+|++++-+
T Consensus 38 lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~ 77 (122)
T PF01597_consen 38 LPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEE 77 (122)
T ss_dssp -B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GH
T ss_pred EccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccc
Confidence 4578999999999999999999999999999999998643
No 81
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=96.90 E-value=0.0027 Score=52.49 Aligned_cols=40 Identities=45% Similarity=0.612 Sum_probs=35.4
Q ss_pred CCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEec
Q 021186 259 PPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA 299 (316)
Q Consensus 259 ~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlV 299 (316)
.+.|++||+|++||.|+..+. -+...|.|+++|+|++|.-
T Consensus 43 ~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~ 82 (101)
T PF13375_consen 43 EPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEK 82 (101)
T ss_pred eEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEee
Confidence 388999999999999999975 5688999999999998753
No 82
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.86 E-value=0.0014 Score=56.89 Aligned_cols=41 Identities=29% Similarity=0.492 Sum_probs=37.5
Q ss_pred CccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCC
Q 021186 261 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 301 (316)
Q Consensus 261 ~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~ 301 (316)
+-++|+.|++|+.++.||+.|...+|.||.+|+|++++-+-
T Consensus 46 lpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l 86 (131)
T COG0509 46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEAL 86 (131)
T ss_pred cCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhh
Confidence 56889999999999999999999999999999999987543
No 83
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.77 E-value=0.0038 Score=59.39 Aligned_cols=64 Identities=33% Similarity=0.512 Sum_probs=51.5
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEe--cceeeEEecCCCeEEEEEecCCCCccCCCCeE
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA--MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPL 311 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEa--mK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL 311 (316)
....++||..|.|+. +++.||.|++||+|+.|-. .....+|+||++|+|.-+.. .-.|..|+.|
T Consensus 222 ~~~~v~Ap~~G~~~~--------~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~--~~~v~~G~~l 287 (288)
T cd06254 222 DVYYVTSPASGLWYP--------FVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA--TLPVRKGDPL 287 (288)
T ss_pred CCEEEecCCCeEEEE--------ecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC--CCccCCCCcc
Confidence 345899999999985 8999999999999999944 35578899999999987653 3466667665
No 84
>PRK06748 hypothetical protein; Validated
Probab=96.68 E-value=0.0032 Score=50.57 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=31.4
Q ss_pred eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 282 LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 282 ~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...-|+||..|+|.++++++||.|..||+|+.|+
T Consensus 3 ~~~~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IE 36 (83)
T PRK06748 3 VIEGVYSPCYGKVEKLFVRESSYVYEWEKLALIE 36 (83)
T ss_pred EeeEEecCCcEEEEEEEeCCCCEECCCCEEEEEE
Confidence 3456899999999999999999999999999986
No 85
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=96.62 E-value=0.0031 Score=47.61 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=30.7
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
|..|.||..|+|.+++++.||.|+.|++|+.|+
T Consensus 1 ~~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve 33 (70)
T PRK08225 1 MTKVYASMAGNVWKIVVKVGDTVEEGQDVVILE 33 (70)
T ss_pred CCeEeCCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 457899999999999999999999999999886
No 86
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=96.40 E-value=0.0044 Score=44.73 Aligned_cols=30 Identities=30% Similarity=0.577 Sum_probs=28.6
Q ss_pred EecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 286 IEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 286 I~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
|+||++|+|.+++++.|+.|..|++|+.|+
T Consensus 2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~ 31 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLE 31 (67)
T ss_pred ccCCccEEEEEEEeCCCCEECCCCEEEEEE
Confidence 789999999999999999999999999886
No 87
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=96.20 E-value=0.0024 Score=63.26 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=29.9
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
..|+||++|+|.+..+..|+.|..|++||.+-|
T Consensus 209 T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp 241 (352)
T COG1566 209 TVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVP 241 (352)
T ss_pred CEEECCCCceEEeecccCCCeecCCCceEEEec
Confidence 457799999999999999999999999998754
No 88
>COG3608 Predicted deacylase [General function prediction only]
Probab=96.14 E-value=0.014 Score=57.58 Aligned_cols=65 Identities=29% Similarity=0.333 Sum_probs=50.9
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEec---ceeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM---KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV 313 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEam---K~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~ 313 (316)
...++||..|.|.- .|+.||+|++||+|+.|-.+ +...+|+|+.+|+|..+.- --+|+.|+.|+.
T Consensus 256 ~~~i~Ap~~G~v~~--------~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~--~~~v~~Gdl~~~ 323 (331)
T COG3608 256 DEMIRAPAGGLVEF--------LVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRS--LRLVQPGDLLKV 323 (331)
T ss_pred cceeecCCCceEEE--------eecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEee--ccccCCCCeeee
Confidence 34799999999874 89999999999999999875 6789999999999987642 224444544443
No 89
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=95.92 E-value=0.018 Score=51.85 Aligned_cols=65 Identities=28% Similarity=0.379 Sum_probs=50.9
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEec----CCeEEEEEecceeeEEecCCCeEEE--------------------
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIV-------------------- 295 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~Vkk----GqvL~iIEamK~~~eI~Ap~sGtV~-------------------- 295 (316)
..|.||+.|++.. +-++-|.|-. |+-++++=.. ..|.||++|+|.
T Consensus 21 ~~i~aP~~G~vi~--------L~~V~D~vFs~k~mGdGvAI~P~~---~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiL 89 (169)
T PRK09439 21 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELF 89 (169)
T ss_pred eEEEecCCeEEEE--------hHHCCChHhcccCccceEEEEccC---CEEEecCCeEEEEEcCCCCEEEEEeCCCcEEE
Confidence 4689999999986 5677777766 6666665443 678888888885
Q ss_pred ---------------EEecCCCCccCCCCeEEEEc
Q 021186 296 ---------------EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 296 ---------------eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+.+++.||.|..||+|+++.
T Consensus 90 IHiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 90 VHFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred EEEeecccccCCCceEEEecCCCEEeCCCEEEEEc
Confidence 56789999999999999874
No 90
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.91 E-value=0.023 Score=54.39 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=43.5
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEec--ceeeEEecCCCeEEEEE
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM--KLMNEIEADRSGTIVEI 297 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEam--K~~~eI~Ap~sGtV~eI 297 (316)
...|+||..|.|+. .++.|+.|++||+|+.|-.- ....+++||.+|+|.-+
T Consensus 231 ~~~v~Ap~~Gi~~~--------~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 231 RDWVAAIHGGLFEP--------SVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred eEEEecCCCeEEEE--------ecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 45899999999985 79999999999999999642 34567899999999876
No 91
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=95.83 E-value=0.011 Score=51.23 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=31.7
Q ss_pred eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 282 LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 282 ~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
-...|+||..|++.+++|++||.|..||.|+.||
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiE 102 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIE 102 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEE
Confidence 4567999999999999999999999999999986
No 92
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=95.59 E-value=0.021 Score=55.02 Aligned_cols=40 Identities=28% Similarity=0.485 Sum_probs=35.6
Q ss_pred EEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 275 CIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 275 ~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
+.|++. ...|.++.+|+|.++++++||.|..||+|++|.+
T Consensus 42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 566654 6889999999999999999999999999999974
No 93
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=95.52 E-value=0.042 Score=47.10 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=17.4
Q ss_pred EEecCCCCccCCCCeEEEEc
Q 021186 296 EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 296 eIlVe~Gd~V~~GqpL~~Ie 315 (316)
++++++||.|..||+|+++.
T Consensus 83 ~~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 83 TSHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred EEEecCCCEEcCCCEEEEEc
Confidence 56788999999999999874
No 94
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.51 E-value=0.02 Score=49.51 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=30.6
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|+||.+|+|.++++++||.|+.||+|+.|+
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lE 93 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILE 93 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence 356899999999999999999999999999986
No 95
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=95.44 E-value=0.041 Score=47.02 Aligned_cols=20 Identities=20% Similarity=0.322 Sum_probs=17.7
Q ss_pred EEecCCCCccCCCCeEEEEc
Q 021186 296 EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 296 eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+.+++.||.|..||+|+++.
T Consensus 83 ~~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 83 TSHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred EEEecCCCEEcCCCEEEEEc
Confidence 67789999999999999874
No 96
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=95.32 E-value=0.022 Score=53.95 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=31.8
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
...|.++.+|+|.++++++||.|..||+|++|++
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~ 75 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDP 75 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 6789999999999999999999999999999864
No 97
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=95.32 E-value=0.02 Score=43.99 Aligned_cols=32 Identities=34% Similarity=0.472 Sum_probs=27.5
Q ss_pred eEEecCCCeEEEE------EecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVE------IIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~e------IlVe~Gd~V~~GqpL~~Ie 315 (316)
.+|++|.-|...+ +++++|+.|..||+|+.|+
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~ie 38 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIE 38 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEE
Confidence 3678888876555 9999999999999999986
No 98
>PRK07051 hypothetical protein; Validated
Probab=95.23 E-value=0.02 Score=44.75 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=29.9
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEE
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE 278 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIE 278 (316)
..|+||..|++.+ +++++||.|+.||+|+.|+
T Consensus 48 ~~i~a~~~G~v~~-------i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 48 TEVEAEAAGRVVE-------FLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred EEEeCCCCEEEEE-------EEcCCcCEECCCCEEEEEe
Confidence 4799999999998 8999999999999999986
No 99
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.11 E-value=0.028 Score=49.68 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=30.1
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|+||..|+|.++++++||.|..||+|+.|+
T Consensus 85 ~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iE 116 (153)
T PRK05641 85 NVVTAPMPGKILRILVREGQQVKVGQGLLILE 116 (153)
T ss_pred CEEECCCCeEEEEEEeCCCCEEcCCCEEEEEe
Confidence 56899999999999999999999999999885
No 100
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=95.03 E-value=0.039 Score=47.78 Aligned_cols=65 Identities=23% Similarity=0.387 Sum_probs=46.3
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEec----CCeEEEEEecceeeEEecCCCeEEE--------------------
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIV-------------------- 295 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~Vkk----GqvL~iIEamK~~~eI~Ap~sGtV~-------------------- 295 (316)
..|.||+.|++.. +-++-|.+-. |+-+++.=.. ..|.||++|+|.
T Consensus 3 ~~i~aPv~G~vi~--------l~~v~D~vFs~~~lG~GvaI~p~~---~~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiL 71 (132)
T PF00358_consen 3 ITIYAPVSGKVIP--------LEEVPDPVFSQKMLGDGVAIIPSD---GKVYAPVDGTVTMIFPTKHAIGIRSDNGVEIL 71 (132)
T ss_dssp EEEE-SSSEEEEE--------GGGSSSHHHHTTSSSEEEEEEESS---SEEEESSSEEEEEE-TTSSEEEEEETTSEEEE
T ss_pred eEEEeeCCcEEEE--------hhhCCchHHCCCCCcCEEEEEcCC---CeEEEEeeEEEEEEcCCCCEEEEEeCCCCEEE
Confidence 4688999999986 4566666632 6777766443 368899999885
Q ss_pred ---------------EEecCCCCccCCCCeEEEEc
Q 021186 296 ---------------EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 296 ---------------eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+.+++.||.|..||+|+.+.
T Consensus 72 iHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 72 IHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp EE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-
T ss_pred EEEccchhhcCCcceEEEEeCCCEEECCCEEEEEc
Confidence 67888999999999999874
No 101
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.93 E-value=0.041 Score=53.19 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=36.9
Q ss_pred EEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 275 CIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 275 ~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+.|....-...|.++.+|+|.+++|++||.|..|++|+.++
T Consensus 35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld 75 (423)
T TIGR01843 35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELD 75 (423)
T ss_pred eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEc
Confidence 46667777788999999999999999999999999999986
No 102
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.92 E-value=0.049 Score=54.86 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=36.1
Q ss_pred EEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 275 CIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 275 ~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
+.|....-...|.++..|+|.+|+|++||.|..||+|+.|.+
T Consensus 51 G~v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~ 92 (457)
T TIGR01000 51 GTIEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDN 92 (457)
T ss_pred EEEEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECc
Confidence 345555556789999999999999999999999999999874
No 103
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=94.81 E-value=0.039 Score=54.65 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=32.2
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
...|.++++|+|.+++|++||.|..||+|++|.+
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~ 94 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP 94 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence 7789999999999999999999999999999974
No 104
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=94.81 E-value=0.08 Score=49.53 Aligned_cols=67 Identities=28% Similarity=0.334 Sum_probs=54.3
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeE--EEEEec--ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVL--CIIEAM--KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL--~iIEam--K~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
...+.||..|.++. .++.||.|++||+| +.+-.. ....+|+||.+|+|.-+ ...-.|..|+.|+.|
T Consensus 220 ~~~~~a~~~G~~~~--------~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~~--~~~~~v~~G~~l~~v 289 (292)
T PF04952_consen 220 PEWVRAPAGGLFEP--------EVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIFI--RESPYVEQGDALAKV 289 (292)
T ss_dssp CCEEESSSSEEEEE--------TSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEESE--CTSSECTTTEEEEEE
T ss_pred ceeecCCccEEEEE--------eecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEEe--CcccccCCCCeEEEE
Confidence 35789999999985 89999999999999 655432 34568999999998644 477789999999887
Q ss_pred c
Q 021186 315 E 315 (316)
Q Consensus 315 e 315 (316)
.
T Consensus 290 ~ 290 (292)
T PF04952_consen 290 A 290 (292)
T ss_dssp E
T ss_pred e
Confidence 3
No 105
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=94.78 E-value=0.048 Score=53.51 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=41.9
Q ss_pred cCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 263 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 263 kvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
+.|+....-+..+.|++.. ...|.++++|+|.++.+++|+.|..||+|+.|++
T Consensus 42 ~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~ 94 (385)
T PRK09859 42 SPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDP 94 (385)
T ss_pred EEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECc
Confidence 3444333444567777654 5779999999999999999999999999999974
No 106
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=94.70 E-value=0.062 Score=51.44 Aligned_cols=41 Identities=7% Similarity=0.127 Sum_probs=34.8
Q ss_pred EEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 274 LCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 274 L~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
-+.|+. -...|.++.+|+|.++++++||.|..||+|++|.+
T Consensus 36 ~G~v~~--~~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~ 76 (331)
T PRK03598 36 YGNVDI--RTVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDA 76 (331)
T ss_pred EEEEee--EEEEeecccCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence 344453 36689999999999999999999999999999863
No 107
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=94.67 E-value=0.06 Score=52.37 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=35.5
Q ss_pred eEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 273 VLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 273 vL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
.-+.|++. -...|.++.+|+|.++++++||.|..||+|+.|++
T Consensus 52 ~~G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 52 ATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEEEEee-eEEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 33455544 34588999999999999999999999999999874
No 108
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=94.61 E-value=0.059 Score=52.78 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=37.8
Q ss_pred CeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 272 QVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 272 qvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
...+.|++. -...|.++.+|+|.++++++||.|..||+|+.|.+
T Consensus 53 ~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~ 96 (385)
T PRK09578 53 ELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDP 96 (385)
T ss_pred EEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECC
Confidence 455677765 45689999999999999999999999999999974
No 109
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=94.60 E-value=0.057 Score=53.91 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=41.2
Q ss_pred cCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 263 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 263 kvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
+.|+.-..=+..+.|++. -...|.++++|+|.++++++|+.|..||+|+.|.+
T Consensus 68 ~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~ 120 (415)
T PRK11556 68 TEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDP 120 (415)
T ss_pred EEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEECc
Confidence 333333333455777764 56779999999999999999999999999999964
No 110
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=94.50 E-value=0.05 Score=48.31 Aligned_cols=39 Identities=38% Similarity=0.538 Sum_probs=29.7
Q ss_pred CCccCCCEEecCCeEEEEEeccee-eEEecCCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEAMKLM-NEIEADRSGTIVEII 298 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEamK~~-~eI~Ap~sGtV~eIl 298 (316)
+.+.+|++|.+||.|+.|.+.|-. .-++||++|+|.-+.
T Consensus 94 ~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 94 PIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp ESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred EEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 689999999999999999999965 559999999998765
No 111
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=94.49 E-value=0.039 Score=56.38 Aligned_cols=39 Identities=28% Similarity=0.243 Sum_probs=34.4
Q ss_pred CCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEec
Q 021186 260 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA 299 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlV 299 (316)
+.|++||+|++||.|+.-+.. ....|.||++|+|++|..
T Consensus 43 ~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 43 MKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred eEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 789999999999999987643 578999999999999954
No 112
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=94.48 E-value=0.067 Score=53.12 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=32.9
Q ss_pred cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 280 MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 280 mK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
..-...|.++.+|+|.+++|++||.|..||+|+.|.+
T Consensus 55 ~~~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~ 91 (421)
T TIGR03794 55 SSGVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQ 91 (421)
T ss_pred CCceeEEECCCCeEEEEEECCCcCEECCCCEEEEECc
Confidence 3445589999999999999999999999999999863
No 113
>PF13437 HlyD_3: HlyD family secretion protein
Probab=94.47 E-value=0.059 Score=42.79 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=30.0
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEec
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
.|+||+.|.+.. +.++.|+.|..|+.|+.|..+
T Consensus 1 ~i~AP~~G~V~~-------~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVS-------INVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEE-------EeCCCCCEECCCCEEEEEEcc
Confidence 489999999998 889999999999999998754
No 114
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=94.43 E-value=0.075 Score=47.50 Aligned_cols=65 Identities=25% Similarity=0.387 Sum_probs=45.3
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEec----CCeEEEEEecceeeEEecCCCeEEE--------------------
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIV-------------------- 295 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~Vkk----GqvL~iIEamK~~~eI~Ap~sGtV~-------------------- 295 (316)
..|.||+.|.+.. +-++-|.|-. ||-+++.= -...|.||++|+|.
T Consensus 6 ~~i~sP~~G~vv~--------Ls~VpD~vFs~k~mGdGiAI~P---~~g~vvAPvdG~v~~iFpTkHAigi~t~~GvEiL 74 (156)
T COG2190 6 EEIYSPLSGEVVP--------LSDVPDPVFSEKMVGDGVAIKP---SEGEVVAPVDGTVVLIFPTKHAIGIETDEGVEIL 74 (156)
T ss_pred EEEEccCCceEEE--------chhCCchHhhcccccCcEEEec---CCCeEEeccCcEEEEEeeCCcEEEEEcCCCcEEE
Confidence 4688888888876 4455555543 44444432 23667777777664
Q ss_pred ---------------EEecCCCCccCCCCeEEEEc
Q 021186 296 ---------------EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 296 ---------------eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+.++++||.|..||+|+++.
T Consensus 75 iHiGiDTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 75 IHIGIDTVKLNGEGFESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred EEeceeeEEECCcceEEEeeCCCEEccCCEEEEEC
Confidence 67899999999999999863
No 115
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=94.31 E-value=0.026 Score=52.04 Aligned_cols=33 Identities=33% Similarity=0.502 Sum_probs=23.1
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEec
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
.|.++..|++.. .+|++||.|++||+|+.|+.-
T Consensus 3 ~Vq~~~~G~V~~-------i~V~eG~~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 3 IVQSLVGGIVTE-------ILVKEGQRVKKGQVLARLDPT 35 (305)
T ss_dssp EE--SS-EEEEE-------E-S-TTEEE-TTSECEEE--H
T ss_pred EEeCCCCeEEEE-------EEccCcCEEeCCCEEEEEEee
Confidence 578899999999 899999999999999999853
No 116
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=94.16 E-value=0.086 Score=52.11 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=36.4
Q ss_pred eEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 273 VLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 273 vL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
..+.|++ .-...|.+.++|+|.++++++||.|..||+|+.|++
T Consensus 56 ~~G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~ 98 (397)
T PRK15030 56 LPGRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP 98 (397)
T ss_pred EEEEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECC
Confidence 3355655 346789999999999999999999999999999975
No 117
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=94.15 E-value=0.054 Score=61.06 Aligned_cols=68 Identities=19% Similarity=0.173 Sum_probs=55.7
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|...+.|..+. +.|+.|+.+..++.....+.. -...|.||..|+|.++++++||.|..||+|+.|+
T Consensus 1039 r~v~fElNGq~re-------V~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iE 1106 (1143)
T TIGR01235 1039 REVFFELNGQPRR-------IKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLE 1106 (1143)
T ss_pred EEEEEEECCeEEE-------EEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCCEeCCCCEEEEEE
Confidence 4677888898877 778888888877765554422 3356999999999999999999999999999986
No 118
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=94.12 E-value=0.12 Score=52.24 Aligned_cols=39 Identities=44% Similarity=0.561 Sum_probs=34.6
Q ss_pred CCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEe
Q 021186 259 PPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII 298 (316)
Q Consensus 259 ~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIl 298 (316)
.+.|++||+|++||.|+..+ ......|.||++|+|++|.
T Consensus 44 ~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 44 EPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred ceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 47899999999999999984 4468899999999999985
No 119
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=93.89 E-value=0.075 Score=52.85 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=31.4
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
...|-+.++|+|++++|++++.|..|++||+|.|
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~ 86 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDP 86 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCEecCCCeEEEECc
Confidence 4567899999999999999999999999999986
No 120
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=93.89 E-value=0.081 Score=50.87 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=30.9
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
..|.++++|+|.++++++||.|..||+|+.|++
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~ 80 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQ 80 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECc
Confidence 569999999999999999999999999999874
No 121
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=93.75 E-value=0.083 Score=53.99 Aligned_cols=38 Identities=37% Similarity=0.324 Sum_probs=33.2
Q ss_pred CCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII 298 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIl 298 (316)
..|++||+|++||.|+.-+.. ....+.||++|+|++|.
T Consensus 44 ~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 44 MKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred eEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 789999999999999965533 57899999999999995
No 122
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=93.63 E-value=0.09 Score=47.91 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=29.7
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|+||++|+|..+.+..|+.|..|++|+.|.
T Consensus 89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred EEEECCCCeEEEEEEcCCCCEeCCCCceEEEE
Confidence 36899999999999999999999999999874
No 123
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=93.45 E-value=0.094 Score=50.24 Aligned_cols=41 Identities=32% Similarity=0.313 Sum_probs=31.9
Q ss_pred CCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCC
Q 021186 260 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 301 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~ 301 (316)
..|++||+|++||+|++=.. ---.-..||++|+|++|..-+
T Consensus 43 m~VkeGD~Vk~Gq~LF~dK~-~p~v~ftsPvsG~V~~I~RG~ 83 (257)
T PF05896_consen 43 MLVKEGDRVKAGQPLFEDKK-NPGVKFTSPVSGTVKAINRGE 83 (257)
T ss_pred EEeccCCEEeCCCeeEeeCC-CCCcEEecCCCeEEEEEecCC
Confidence 68999999999999986431 123557799999999987633
No 124
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=93.38 E-value=0.18 Score=53.81 Aligned_cols=66 Identities=21% Similarity=0.378 Sum_probs=50.0
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEec----CCeEEEEEecceeeEEecCCCeEEE-------------------
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIV------------------- 295 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~Vkk----GqvL~iIEamK~~~eI~Ap~sGtV~------------------- 295 (316)
...|.||+.|++.. .-++-|.|-. |+-++++=++ ..|.||++|+|+
T Consensus 498 ~~~v~aP~~G~vi~--------l~~v~D~vFs~~~~G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~ei 566 (648)
T PRK10255 498 IAELVSPITGDVVA--------LDQVPDEAFASKAVGDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEI 566 (648)
T ss_pred ceEEEecCCcEEEE--------cccCcchhhhcccccCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEE
Confidence 34699999999986 5566665554 6666655443 588899999886
Q ss_pred ----------------EEecCCCCccCCCCeEEEEc
Q 021186 296 ----------------EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 296 ----------------eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+.+|++||.|..||+|+++.
T Consensus 567 LIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 567 VVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred EEEeccchhccCCCCceEEecCCCEEcCCCEEEEEc
Confidence 46688999999999999874
No 125
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=92.85 E-value=0.12 Score=51.34 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=30.3
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|+||++|+|..+.+..|+.|..|++|+.|.
T Consensus 254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~ 285 (421)
T TIGR03794 254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLE 285 (421)
T ss_pred CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEE
Confidence 67999999999999999999999999999984
No 126
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=92.83 E-value=0.2 Score=53.35 Aligned_cols=64 Identities=17% Similarity=0.309 Sum_probs=51.1
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEec----CCeEEEEEecceeeEEecCCCeEEE---------------------
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIV--------------------- 295 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~Vkk----GqvL~iIEamK~~~eI~Ap~sGtV~--------------------- 295 (316)
.|.||+.|++.. +-++.|.|-. ||-+++.=. ...|.||++|+|.
T Consensus 480 ~i~aP~~G~v~~--------L~~v~D~vFs~~~mG~G~AI~P~---~~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLi 548 (627)
T PRK09824 480 GICSPMTGEVVP--------LEQVADTTFASGLLGKGIAILPS---VGEVRSPVAGRVASLFATLHAIGLESDDGVEVLI 548 (627)
T ss_pred hcccccceEEee--------HHHCCCccccccccCCceEecCC---CCeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEE
Confidence 589999999986 6677887777 666665533 3588899999885
Q ss_pred --------------EEecCCCCccCCCCeEEEEc
Q 021186 296 --------------EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 296 --------------eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+.++++||.|..||+|+++.
T Consensus 549 HiGiDTV~L~G~gF~~~v~~Gd~V~~G~~l~~~D 582 (627)
T PRK09824 549 HVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFD 582 (627)
T ss_pred EechhhhhcCCCCceEEecCCCEEcCCCEEEEEc
Confidence 67788999999999999874
No 127
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=92.65 E-value=0.31 Score=52.53 Aligned_cols=39 Identities=44% Similarity=0.479 Sum_probs=33.5
Q ss_pred CCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEe
Q 021186 259 PPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII 298 (316)
Q Consensus 259 ~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIl 298 (316)
.+.|++||+|.+||.|+.-+ .-...+|.||.+|+|+.|.
T Consensus 50 ~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 50 ELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred cceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 38999999999999999654 3357999999999999985
No 128
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=92.55 E-value=0.26 Score=52.21 Aligned_cols=64 Identities=27% Similarity=0.414 Sum_probs=49.6
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEec----CCeEEEEEecceeeEEecCCCeEEE---------------------
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIV--------------------- 295 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~Vkk----GqvL~iIEamK~~~eI~Ap~sGtV~--------------------- 295 (316)
.|.||+.|++.. .-++-|.|-. ||-+++.=. ...|.||++|+|.
T Consensus 464 ~i~aP~~G~~~~--------l~~v~D~vFs~~~~G~G~ai~P~---~~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eili 532 (610)
T TIGR01995 464 SLYAPVAGEMLP--------LNEVPDEVFSSGAMGKGIAILPT---EGEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILI 532 (610)
T ss_pred eeccccceEEee--------HhhCCCccccccCcCCceEeeCC---CCEEECCCCeEEEEEcCCCCEEEEEECCCcEEEE
Confidence 689999999986 5666777766 665555432 3578888888885
Q ss_pred --------------EEecCCCCccCCCCeEEEEc
Q 021186 296 --------------EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 296 --------------eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+.++++||.|..||+|+++.
T Consensus 533 HiGidTv~l~g~gF~~~v~~g~~V~~G~~l~~~d 566 (610)
T TIGR01995 533 HVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFD 566 (610)
T ss_pred EeccchhccCCCCeEEEecCcCEEcCCCEEEEec
Confidence 67799999999999999874
No 129
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=92.29 E-value=0.24 Score=49.45 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=36.0
Q ss_pred eEEEEEecc-eeeEEecCCCeEEEEEe-cCCCCccCCCCeEEEEc
Q 021186 273 VLCIIEAMK-LMNEIEADRSGTIVEII-AEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 273 vL~iIEamK-~~~eI~Ap~sGtV~eIl-Ve~Gd~V~~GqpL~~Ie 315 (316)
..+.|+.+. ....|.++++|.|.+++ +..||.|..||+|++|.
T Consensus 112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~ 156 (409)
T PRK09783 112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLT 156 (409)
T ss_pred EeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEe
Confidence 345666543 45679999999999998 99999999999999986
No 130
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=92.28 E-value=0.1 Score=54.40 Aligned_cols=38 Identities=45% Similarity=0.515 Sum_probs=35.0
Q ss_pred CCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEe
Q 021186 259 PPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII 298 (316)
Q Consensus 259 ~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIl 298 (316)
.++|++||+|.+||.|..=+. .+.++.||.+|+|.+|.
T Consensus 46 ~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 46 ILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred ceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 378999999999999998775 89999999999999997
No 131
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=92.17 E-value=0.32 Score=44.51 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=35.9
Q ss_pred CCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 271 GQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 271 GqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
-...+.+++ .....|.+...|.|.++++++||.|..|++|+.+++
T Consensus 55 ~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 55 VRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eeeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 334455555 333478888999999999999999999999999863
No 132
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=91.98 E-value=0.11 Score=46.85 Aligned_cols=42 Identities=31% Similarity=0.419 Sum_probs=38.1
Q ss_pred ccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCC
Q 021186 262 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 303 (316)
Q Consensus 262 VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd 303 (316)
=++|..|.+|+-++.+|.-|...+|.+|++|+|++|+-+-.+
T Consensus 88 Pe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~E 129 (172)
T KOG3373|consen 88 PEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEE 129 (172)
T ss_pred CCCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccccc
Confidence 367999999999999999999999999999999999865544
No 133
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=91.90 E-value=1.5 Score=43.78 Aligned_cols=145 Identities=19% Similarity=0.197 Sum_probs=87.4
Q ss_pred hhhcccccCCCceeEEEecCCCCCCCCCc---cccccCCCCCCCCCCCccccchhcccHHHHHHHHHHHhhCCCcEEEEE
Q 021186 91 RSFLDSLLGTPVEFKVAFDGSSNASATPA---AETKDAKQPNEPSPSILASEESISEFISQVSSLIKLVDSRDIVELQLK 167 (316)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~qI~eLIklld~S~IsELeLk 167 (316)
+.++..++.+.....|-+.|+.+-..... .++...+++.-.. ..++.++|++-|.. +-.+|+=+.++
T Consensus 96 ~f~~~l~~lS~fIW~IeI~Gn~~~~~~~I~~~L~e~Gi~~G~~k~---------~id~~~~ie~~l~~-~~~~i~WV~i~ 165 (385)
T PF06898_consen 96 LFLALLYILSSFIWSIEIEGNEPVTEEEILQFLEENGIKPGAWKF---------KIDSCEEIEKKLRK-QFPDISWVGIE 165 (385)
T ss_pred HHHHHHHHHcCeEEEEEEECCCCCCHHHHHHHHHHcCCCcCeeec---------CCChHHHHHHHHHh-hCCCeEEEEEE
Confidence 34555667888899999999987654433 3444444443322 11237777775532 33467777777
Q ss_pred eCCeEEEEEecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCcC
Q 021186 168 QLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMA 247 (316)
Q Consensus 168 ~~d~~L~LrK~~~~~~~~~~a~~~~~~sp~~~~~a~~a~~~pa~a~~apaas~a~p~s~~~~~a~~~~~~~~~~V~APmv 247 (316)
-.|.++.|+-.+... |. .. .......|.|-..
T Consensus 166 ~~GT~l~I~v~E~~~--------------------------p~---~~-------------------~~~~p~~lVA~kd 197 (385)
T PF06898_consen 166 IKGTRLIIEVVEKVD--------------------------PE---EI-------------------DKEEPCNLVAKKD 197 (385)
T ss_pred EEeeEEEEEEEEcCC--------------------------CC---cc-------------------cCCCCcceEECCC
Confidence 778888887654210 00 00 0011135777778
Q ss_pred eEEEcCCCCCCCCCccCCCEEecCCeEE--EEEecceeeEEecCCCeEEE
Q 021186 248 GTFYRSPAPGEPPFVKVGDRVQKGQVLC--IIEAMKLMNEIEADRSGTIV 295 (316)
Q Consensus 248 Gtf~~sp~p~~~~~VkvGD~VkkGqvL~--iIEamK~~~eI~Ap~sGtV~ 295 (316)
|.+.+.-.-...+.|++||.|++||+|. .|+...-..+ -..+|.|.
T Consensus 198 GvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG~i~~~~~~~~--v~A~G~V~ 245 (385)
T PF06898_consen 198 GVITSIIVRSGTPLVKVGDTVKKGDVLISGVIEIEGDEQE--VHADGDVK 245 (385)
T ss_pred CEEEEEEecCCeEEecCCCEECCCCEEEeeeEcCCCCceE--ECCcEEEE
Confidence 8877766666778999999999999994 5654433333 33445554
No 134
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=91.22 E-value=0.24 Score=52.52 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=30.3
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|.||..|+|.+++|++||.|..||+|+.|+
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iE 557 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIE 557 (596)
T ss_pred CeEecCcceEEEEEEeCCCCEeCCCCEEEEEE
Confidence 46999999999999999999999999999986
No 135
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=90.70 E-value=0.41 Score=43.86 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=38.2
Q ss_pred CccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 021186 261 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF 312 (316)
Q Consensus 261 ~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~ 312 (316)
++++|+.+++||.++.++-+- ...+--|.+ .++.++.||.|..|+.+.
T Consensus 155 ~~~~g~~v~kGe~~G~f~fGS-tV~l~~p~~---~~~~V~~G~kV~~Getvi 202 (206)
T PRK05305 155 YVKEGDEVERGERFGLIRFGS-RVDVYLPLG---TEPLVSVGQKVVAGETVL 202 (206)
T ss_pred eCCCCCEEccCcEEeEEecCC-eEEEEEcCC---CcccccCCCEEEcccEEE
Confidence 679999999999999999873 344444554 278999999999998554
No 136
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=90.47 E-value=0.44 Score=43.08 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=38.5
Q ss_pred CccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 021186 261 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF 312 (316)
Q Consensus 261 ~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~ 312 (316)
++++|+.+++||.++.++-+ -...+--|.+ .++.++.|+.|..|+.|.
T Consensus 135 ~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 135 YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 67899999999999999977 3333445554 367899999999999775
No 137
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=90.30 E-value=0.22 Score=44.02 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=30.5
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEE
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE 278 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIE 278 (316)
...|.|+..|++.+ ++++.||.|..||.|+.|+
T Consensus 124 ~~eI~A~~~G~v~~-------i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 124 MNEIEAEVAGKVVE-------ILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred ceEEecCCCcEEEE-------EEeCCCCEECCCCEEEEEC
Confidence 35899999999999 8999999999999999985
No 138
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=90.07 E-value=0.27 Score=46.16 Aligned_cols=35 Identities=23% Similarity=0.507 Sum_probs=32.0
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecc
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 281 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK 281 (316)
..|.||..|++.. .++++||.|..||+|+.|+.+.
T Consensus 46 ~~~~a~~~g~~~~-------~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 46 NEVEAPAAGTLRR-------QVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred EEEecCCCeEEEE-------EEcCCCCEeCCCCEEEEEecCC
Confidence 4799999999998 7999999999999999998653
No 139
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=90.01 E-value=0.37 Score=46.63 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=28.0
Q ss_pred EecCCCeEEEE-------EecCCCCccCCCCeEEEEc
Q 021186 286 IEADRSGTIVE-------IIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 286 I~Ap~sGtV~e-------IlVe~Gd~V~~GqpL~~Ie 315 (316)
|.||..|++.+ ++++.||.|+.||+|+.|+
T Consensus 200 V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIE 236 (274)
T PLN02983 200 LKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIE 236 (274)
T ss_pred EeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEE
Confidence 78999999999 5999999999999999986
No 140
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=89.95 E-value=2.5 Score=42.42 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=76.0
Q ss_pred hhcccccCCCceeEEEecCCCCCCCCCc---cccccCCCCCCCCCCCccccchhcccHHHHHH-HHHHHhhCCCcEEEEE
Q 021186 92 SFLDSLLGTPVEFKVAFDGSSNASATPA---AETKDAKQPNEPSPSILASEESISEFISQVSS-LIKLVDSRDIVELQLK 167 (316)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~qI~e-LIklld~S~IsELeLk 167 (316)
.++..++.+.....|-..|+.+-..... .++...+++--.+ . -|.++|++ |++.+ .+|+=+.++
T Consensus 94 f~~ll~~lS~fIW~IeI~Gn~~~t~~~i~~~L~e~Gi~~G~~k~--------~--id~~~ie~~l~~~~--~~i~WV~v~ 161 (382)
T TIGR02876 94 FLAIVYFLSNFIWKIDITGVKGETPYEIRKQLKEMGIKPGVWKF--------S--VDVYKLERKLLDRV--PEIMWAGVR 161 (382)
T ss_pred HHHHHHHHhheEEEEEEECCCCCCHHHHHHHHHHcCCCcCeeeC--------C--CCHHHHHHHHHhhC--CCcEEEEEE
Confidence 3445667788888899999877654432 4455555554333 1 14555655 33444 566666666
Q ss_pred eCCeEEEEEecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCcC
Q 021186 168 QLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPSSTAGKSVKSSLPPLKCPMA 247 (316)
Q Consensus 168 ~~d~~L~LrK~~~~~~~~~~a~~~~~~sp~~~~~a~~a~~~pa~a~~apaas~a~p~s~~~~~a~~~~~~~~~~V~APmv 247 (316)
-.|.+|.|+-.+...++ ... .......|.|-..
T Consensus 162 i~GTrl~i~v~Ek~~~p------------------------~~~-----------------------~~~~P~~lVA~kd 194 (382)
T TIGR02876 162 VRGTTLVIKVVEKQEPK------------------------PVL-----------------------KKAEPRNIVAKKD 194 (382)
T ss_pred EEeEEEEEEEEecCCCC------------------------Ccc-----------------------ccCCCccEEECCC
Confidence 67777777655431100 000 0011135777788
Q ss_pred eEEEcCCCCCCCCCccCCCEEecCCeEE
Q 021186 248 GTFYRSPAPGEPPFVKVGDRVQKGQVLC 275 (316)
Q Consensus 248 Gtf~~sp~p~~~~~VkvGD~VkkGqvL~ 275 (316)
|.+.+.-.-...+.|++||.|++||+|.
T Consensus 195 GvI~~i~v~~G~p~Vk~GD~VkkGqvLI 222 (382)
T TIGR02876 195 GVIKRVYVTSGEPVVKKGDVVKKGDLLI 222 (382)
T ss_pred CEEEEEEEcCCeEEEccCCEEcCCCEEE
Confidence 8877755556678899999999999985
No 141
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=89.75 E-value=0.27 Score=43.33 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=30.5
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEE
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE 278 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIE 278 (316)
...|+||..|++.. ++++.|+.|..||.|+.|+
T Consensus 123 ~~eI~a~~~G~i~~-------i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 123 MNEIEADKSGVVTE-------ILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred ceEEecCCCeEEEE-------EEcCCCCEeCCCCEEEEeC
Confidence 45899999999999 8999999999999999885
No 142
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=89.56 E-value=0.4 Score=50.75 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=30.8
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|.||..|+|.++++++||.|+.||+|+.|+
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iE 556 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILE 556 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 447999999999999999999999999999986
No 143
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=89.44 E-value=0.41 Score=50.48 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=30.9
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|.||..|+|.++++++||.|..||+|+.|+
T Consensus 517 ~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iE 549 (582)
T TIGR01108 517 GTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILE 549 (582)
T ss_pred CCeEeCCccEEEEEEEeCCCCEECCCCEEEEEE
Confidence 357999999999999999999999999999986
No 144
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=89.01 E-value=0.42 Score=48.19 Aligned_cols=34 Identities=24% Similarity=0.138 Sum_probs=29.8
Q ss_pred eeEEecCCCeEEEEEecCCC-CccCCCCeEEEEcC
Q 021186 283 MNEIEADRSGTIVEIIAEDR-KPVSVDTPLFVIEP 316 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~G-d~V~~GqpL~~IeP 316 (316)
...|+||++|+|....+..| +.|..|++|+.|-|
T Consensus 316 ~~~I~AP~dG~V~~~~~~~G~~~V~~G~~l~~IvP 350 (457)
T TIGR01000 316 KGVIKAPEDGVLHLNPETKGIKYVPKGTLIAQIYP 350 (457)
T ss_pred CCEEECCCCeEEEecccCCCCcEeCCCCEEEEEec
Confidence 57899999999998788899 69999999999854
No 145
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=88.57 E-value=0.53 Score=49.75 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=30.9
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|.||..|+|.++++++||.|+.||+|+.|+
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ie 554 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLE 554 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEe
Confidence 467999999999999999999999999999986
No 146
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=87.96 E-value=0.52 Score=47.58 Aligned_cols=41 Identities=34% Similarity=0.323 Sum_probs=32.3
Q ss_pred CCccCCCEEecCCeEEEEEecc-eeeEEecCCCeEEEEEecCCC
Q 021186 260 PFVKVGDRVQKGQVLCIIEAMK-LMNEIEADRSGTIVEIIAEDR 302 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEamK-~~~eI~Ap~sGtV~eIlVe~G 302 (316)
..|++||.|++||+|++-. | --.-+.||++|+|++|.-.+-
T Consensus 43 mkV~~gD~VkkGq~LfEdK--knpgv~~Tap~sG~V~aI~RG~K 84 (447)
T COG1726 43 MKVREGDAVKKGQVLFEDK--KNPGVVFTAPVSGKVTAIHRGEK 84 (447)
T ss_pred ceeccCCeeeccceeeecc--cCCCeEEeccCCceEEEeecccc
Confidence 6799999999999998643 3 235588999999999875443
No 147
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=87.89 E-value=0.43 Score=35.69 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=28.4
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEE
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCII 277 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iI 277 (316)
..|+||..|++.. ++++.|+.|..|+.|+.|
T Consensus 43 ~~i~ap~~G~v~~-------~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 43 SDVEAPKSGTVKK-------VLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred EEEEcCCCEEEEE-------EEeCCCCEECCCCEEEEC
Confidence 4799999999999 899999999999999875
No 148
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=87.39 E-value=1 Score=35.32 Aligned_cols=30 Identities=43% Similarity=0.495 Sum_probs=21.6
Q ss_pred cCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecc
Q 021186 243 KCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 281 (316)
Q Consensus 243 ~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK 281 (316)
.-+.+|... +++.||.|++||+||.|-+..
T Consensus 28 ID~~vGi~l---------~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 28 IDPAVGIEL---------HKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp --TT-EEEE---------SS-TTSEEBTTSEEEEEEESS
T ss_pred cCcCcCeEe---------cCcCcCEECCCCeEEEEEcCC
Confidence 345677765 589999999999999997654
No 149
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=87.30 E-value=0.45 Score=49.10 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=32.1
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEec
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
...|.||..|++.. +++++||.|..||+||.|+..
T Consensus 134 ~~eI~Ap~~G~v~~-------ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 134 TIDIASPASGVIQE-------FLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred eeEEecCCCeEEEE-------EEeCCCCEecCCCEEEEeccC
Confidence 35899999999999 999999999999999999754
No 150
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=86.31 E-value=0.73 Score=48.83 Aligned_cols=31 Identities=32% Similarity=0.469 Sum_probs=29.2
Q ss_pred EEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 285 EIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 285 eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.+.||..|+|+.+.|++|+.|..||+|++++
T Consensus 577 ~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlE 607 (645)
T COG4770 577 ELLAPMPGTVVSVAVKEGQEVSAGDLLVVLE 607 (645)
T ss_pred ceecCCCceEEEEEecCCCEecCCCeEEEeE
Confidence 3889999999999999999999999999886
No 151
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.98 E-value=1.2 Score=39.61 Aligned_cols=51 Identities=29% Similarity=0.406 Sum_probs=43.1
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceee-EEecCCCeEEEEEe
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMN-EIEADRSGTIVEII 298 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~-eI~Ap~sGtV~eIl 298 (316)
...-|+-|.++. +.+.+|++|.+|+.++-+.+-|... =+++|.+|+|+-+.
T Consensus 93 ll~iPvEGYvVt-------pIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~ 144 (161)
T COG4072 93 LLLIPVEGYVVT-------PIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID 144 (161)
T ss_pred EEEEecCcEEEE-------EeecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence 455678888777 7899999999999999999998764 48899999998664
No 152
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=85.47 E-value=0.96 Score=40.96 Aligned_cols=63 Identities=21% Similarity=0.204 Sum_probs=46.8
Q ss_pred CCccCCcCeEEEcCCCCCCCCCc--cCCCEEecCCeEEEEEecc-eeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFV--KVGDRVQKGQVLCIIEAMK-LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV 313 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~V--kvGD~VkkGqvL~iIEamK-~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~ 313 (316)
..|.+-.+|++.. ++ ++|+.|++||.++.++=+- +.+-+..+ .+.++.++.|+.|..|+.|++
T Consensus 137 v~Vga~~v~~I~~--------~~~~~~g~~v~kG~e~G~f~fGStvvl~f~~~---~~~~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 137 VQVGALLVGSIVL--------TVDPKEGDEVKKGEELGYFRFGSTVVLLFPKD---KIFEWSVKPGQKVRAGETIGY 202 (202)
T ss_pred EEeccceeceeEE--------EecccCCCEEecCcEeCEEecCCeEEEEEeCC---CccccccCCCCEEEeeeEEeC
Confidence 3677778888876 45 6899999999999998633 22223333 223899999999999999863
No 153
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=85.28 E-value=0.92 Score=51.69 Aligned_cols=33 Identities=21% Similarity=0.493 Sum_probs=30.4
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|.||+.|+|.++++++||.|+.||+|+.|+
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iE 1164 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILE 1164 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEE
Confidence 345899999999999999999999999999986
No 154
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=84.61 E-value=1.3 Score=30.89 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=25.8
Q ss_pred cCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 288 ADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 288 Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
++.+|.|.++.++.|+.+.+|++|+.++
T Consensus 11 ~~~~g~i~~~~~~~g~~v~~~~~l~~~~ 38 (74)
T cd06849 11 SMTEGTIVEWLVKEGDSVEEGDVLAEVE 38 (74)
T ss_pred CCcEEEEEEEEECCCCEEcCCCEEEEEE
Confidence 6788999999999999999999999874
No 155
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=84.52 E-value=0.71 Score=47.01 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=32.0
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEec
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
...|.||..|++.+ +++++||.|..|++|+.|+..
T Consensus 87 ~~ei~Ap~~G~v~~-------i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 87 SVDIRAPASGVITK-------IFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred EEEEecCCCeEEEE-------EEeCCCCEecCCCEEEEEcCC
Confidence 35899999999998 899999999999999999864
No 156
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=83.96 E-value=0.75 Score=42.13 Aligned_cols=32 Identities=38% Similarity=0.566 Sum_probs=29.4
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEe
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEa 279 (316)
.|.++..|.+.. ++|++||.|++||+|+.++.
T Consensus 68 ~v~~~~~G~v~~-------i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 68 EVLARVAGIVAE-------ILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eEecccccEEEE-------EEccCCCeecCCCEEEEECC
Confidence 677888999998 89999999999999999986
No 157
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=83.01 E-value=0.87 Score=46.05 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=32.3
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEec
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
...|.+|..|++.. .+|++||+|+.||-|+.|+..
T Consensus 115 tv~V~sP~sGvi~e-------~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 115 TVEVPSPASGVITE-------LLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred eeeccCCCcceeeE-------EecCCCCcccCCceeEEecCC
Confidence 46899999999998 899999999999999999875
No 158
>PRK12999 pyruvate carboxylase; Reviewed
Probab=82.84 E-value=1.4 Score=50.10 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=30.7
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|.||..|+|.++++++||.|..||+|+.|+
T Consensus 1076 ~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~le 1108 (1146)
T PRK12999 1076 PGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIE 1108 (1146)
T ss_pred CceEeCCceEEEEEEEcCCCCEECCCCEEEEEE
Confidence 356999999999999999999999999999986
No 159
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=82.76 E-value=2.2 Score=47.18 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=29.2
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|-||..|+|+++.|+.|+.|..||+|+.|+
T Consensus 1080 ~higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ie 1111 (1149)
T COG1038 1080 GHIGAPMPGVVVEVKVKKGDKVKKGDVLAVIE 1111 (1149)
T ss_pred cccCCCCCCceEEEEEccCCeecCCCeeeehh
Confidence 34669999999999999999999999999886
No 160
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=81.98 E-value=2.7 Score=37.89 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=18.3
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
++|++||+|++||.|+.++-
T Consensus 106 ~~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 106 RIAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred EEecCCCEEeCCCEEEEEcH
Confidence 77999999999999999864
No 161
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=81.11 E-value=1.5 Score=40.79 Aligned_cols=35 Identities=34% Similarity=0.569 Sum_probs=31.0
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEec
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
...|+||+.|++.. .+++.|+.|++|+.|+.|-..
T Consensus 134 ~~~i~AP~~G~V~~-------~~~~~G~~v~~g~~l~~i~~~ 168 (322)
T TIGR01730 134 YTEIRAPFDGTIGR-------RLVEVGAYVTAGQTLATIVDL 168 (322)
T ss_pred cCEEECCCCcEEEE-------EEcCCCceeCCCCcEEEEEcC
Confidence 35799999999998 789999999999999988653
No 162
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=80.88 E-value=1.4 Score=40.08 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=28.3
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEE
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE 278 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIE 278 (316)
.|+||+.|.+.. .++++|+.|..|++|+.|-
T Consensus 90 ~i~AP~dG~V~~-------~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 90 EVRSPFDGYITQ-------KSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred EEECCCCeEEEE-------EEcCCCCEeCCCCceEEEE
Confidence 579999999998 7899999999999998764
No 163
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=80.83 E-value=1.4 Score=44.58 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=32.5
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecc
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 281 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK 281 (316)
...|.||..|++.+ +++++||.|..|++|+.|+...
T Consensus 45 ~~ei~a~~~G~v~~-------i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 45 VLEVPAPAAGVLSE-------ILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred eeEEecCCCEEEEE-------EEeCCCCEeCCCCEEEEEecCC
Confidence 35899999999998 8999999999999999998654
No 164
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=80.54 E-value=2 Score=38.59 Aligned_cols=55 Identities=16% Similarity=0.261 Sum_probs=33.0
Q ss_pred CCccCCCEEecCCeEEEEEecce-------eeEEecCCCeEE-EEEecCCCCccCCCCeEEEE
Q 021186 260 PFVKVGDRVQKGQVLCIIEAMKL-------MNEIEADRSGTI-VEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEamK~-------~~eI~Ap~sGtV-~eIlVe~Gd~V~~GqpL~~I 314 (316)
.+|++||+|++||.|+..+-..+ ..+|--.-...+ .-+....+..|..|+.++.+
T Consensus 91 ~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~~~~~~ 153 (156)
T COG2190 91 SLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGETLLLV 153 (156)
T ss_pred EEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCCeeEEE
Confidence 68999999999999999875432 222221111111 11223344477888888765
No 165
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=80.17 E-value=2 Score=52.52 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=18.4
Q ss_pred CCCCCccCCCEEecCCeEEEEE
Q 021186 257 GEPPFVKVGDRVQKGQVLCIIE 278 (316)
Q Consensus 257 ~~~~~VkvGD~VkkGqvL~iIE 278 (316)
+...+|+.|+.|++||+||.-+
T Consensus 2421 ga~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844 2421 GAKLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred ccEEEecCCCEecCCCEEEEEc
Confidence 4557899999999999999654
No 166
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=79.50 E-value=2.6 Score=44.73 Aligned_cols=55 Identities=25% Similarity=0.469 Sum_probs=36.1
Q ss_pred CCccCCCEEecCCeEEEEEecce-------eeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 260 PFVKVGDRVQKGQVLCIIEAMKL-------MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEamK~-------~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
.+|++||+|++||.|+.++-..+ ..+|--.-......+....+..|..|++++.+
T Consensus 548 ~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~~vvv~n~~~~~~~~~~~~~~~~~~~~~~~~ 609 (610)
T TIGR01995 548 ILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPTDKETVTAGDVLLRL 609 (610)
T ss_pred EEecCcCEEcCCCEEEEecHHHHHhcCCCCeeEEEEEccccccceeeccCCcccCCCeeEEe
Confidence 77999999999999999875332 22222211222233444556679999998875
No 167
>PRK12784 hypothetical protein; Provisional
Probab=79.35 E-value=1.7 Score=35.10 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=29.8
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.-+|.+|+-|+|.++++.+++.|-.=.+||.|+
T Consensus 5 ie~iyS~~~G~Vekifi~esSyVYEWEkL~~I~ 37 (84)
T PRK12784 5 MEEICSSYEGKVEEIFVNESSYVYEWEKLMMIR 37 (84)
T ss_pred hhhhcCccccEEEEEEEcCCceEEeeeeeeEEe
Confidence 346899999999999999999999889999886
No 168
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=78.45 E-value=3 Score=44.62 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=34.6
Q ss_pred CCccCCCEEecCCeEEEEEecc-------eeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 260 PFVKVGDRVQKGQVLCIIEAMK-------LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEamK-------~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
.+|++||+|++||.|+.++-.. ...+|--.-......+....+..|..|++|+.+
T Consensus 564 ~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~~vvvtn~~~~~~~~~~~~~~v~~~~~~~~~ 625 (627)
T PRK09824 564 AHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDDYTDVLPHATAQVSAGEPLLSI 625 (627)
T ss_pred EEecCCCEEcCCCEEEEEcHHHHHhcCCCCeEEEEEEccccccceeeccCCcccCCCeEEEe
Confidence 7899999999999999987432 122222111111222333455679999998876
No 169
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=77.70 E-value=2 Score=43.45 Aligned_cols=35 Identities=34% Similarity=0.528 Sum_probs=32.1
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEec
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
...|.||..|++.+ +++++|+.|..|++|+.|+..
T Consensus 43 ~~ei~a~~~G~v~~-------i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 43 VLEVPSPADGVLQE-------ILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred eeEEecCCCEEEEE-------EEeCCCCEeCCCCEEEEEecC
Confidence 35899999999999 899999999999999999865
No 170
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=77.65 E-value=2.2 Score=43.04 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=32.5
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEec
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
..+|-||..|++.. .++++||.|..|++||.|+..
T Consensus 45 ~~EV~ap~~G~l~~-------i~~~~G~~V~Vg~~I~~i~~~ 79 (404)
T COG0508 45 TMEVPAPDAGVLAK-------ILVEEGDTVPVGAVIARIEEE 79 (404)
T ss_pred eEEecCCCCeEEEE-------EeccCCCEEcCCCeEEEEecC
Confidence 35899999999999 899999999999999999875
No 171
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=75.98 E-value=3.2 Score=48.58 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=45.4
Q ss_pred CCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 265 GDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 265 GD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
|-++.-|--.|.+|...--..+++|..|.+.+.+|++|+-|..||+-++||
T Consensus 667 ~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiE 717 (2196)
T KOG0368|consen 667 GYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIE 717 (2196)
T ss_pred eEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeehe
Confidence 667777888888888777777999999999999999999999999999876
No 172
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=75.95 E-value=5.5 Score=46.10 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=30.9
Q ss_pred CCCccCCCEEecCCeEEEEEec-------ceeeEEecCCCeEE
Q 021186 259 PPFVKVGDRVQKGQVLCIIEAM-------KLMNEIEADRSGTI 294 (316)
Q Consensus 259 ~~~VkvGD~VkkGqvL~iIEam-------K~~~eI~Ap~sGtV 294 (316)
-.+|+.|++|+++|+|+++-+. |..-.|.|+.+|.|
T Consensus 404 ~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI 446 (1331)
T PRK02597 404 LLFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEV 446 (1331)
T ss_pred EEEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEE
Confidence 3789999999999999999874 35668999999976
No 173
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=74.48 E-value=6.2 Score=36.71 Aligned_cols=39 Identities=28% Similarity=0.300 Sum_probs=24.5
Q ss_pred CccCCcCeEEEcC-CCCC-----------------CCCCccCCCEEecCCeEEEEEe
Q 021186 241 PLKCPMAGTFYRS-PAPG-----------------EPPFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 241 ~V~APmvGtf~~s-p~p~-----------------~~~~VkvGD~VkkGqvL~iIEa 279 (316)
.|+||..|.+... ..-. ...++++|+.|..|+.|+.|-.
T Consensus 136 ~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~l~~i~~ 192 (328)
T PF12700_consen 136 QIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQPLFTIAD 192 (328)
T ss_dssp HEE-SSSEEEE------------EES----------E-TT-TT-EETSTTCSEEEEE
T ss_pred ccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCceeeeecc
Confidence 3999999999900 0000 0278999999999999988844
No 174
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=73.77 E-value=5.3 Score=38.14 Aligned_cols=71 Identities=14% Similarity=0.081 Sum_probs=46.6
Q ss_pred CccCCcCeEEEcCCCC---------CCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeE
Q 021186 241 PLKCPMAGTFYRSPAP---------GEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPL 311 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p---------~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL 311 (316)
.|.|-++|.+...-.+ ....++..|+.|++||.++.++=+-... +--|. |.+ ++.++.|+.|..|+.|
T Consensus 186 ~VgA~~Vg~I~~~~~~~~~~~~~~r~i~~~~~~~~~v~kGee~G~F~fGSTVv-llf~~-~~~-~~~v~~g~~V~~Ge~i 262 (265)
T PRK03934 186 FVGALNVGKMRFNFDERIQTNAKARFIQTYEYENLKLKKGEELGNFEMGSTIV-LFSQK-GSL-EFNLKAGKSVKFGESI 262 (265)
T ss_pred EEeeEEeeEEEEEeccccccCcccCceeeeccCCceEccccEeeEEccCCEEE-EEEeC-Ccc-eEccCCCCEEEcchhh
Confidence 5666777776532111 1112345699999999999999764332 33333 333 5789999999999998
Q ss_pred EEE
Q 021186 312 FVI 314 (316)
Q Consensus 312 ~~I 314 (316)
..|
T Consensus 263 g~~ 265 (265)
T PRK03934 263 GEI 265 (265)
T ss_pred ccC
Confidence 764
No 175
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=73.22 E-value=2.8 Score=44.30 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=27.8
Q ss_pred EecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 286 IEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 286 I~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+.||..|+|.+++|++||.|..||.|+.++
T Consensus 604 ~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~ 633 (670)
T KOG0238|consen 604 IVAPMPGIIEKVLVKPGDKVKEGQELVVLI 633 (670)
T ss_pred eecCCCCeeeeeeccchhhhcccCceEEEE
Confidence 669999999999999999999999998764
No 176
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=72.54 E-value=3.4 Score=41.87 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=31.5
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecc
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 281 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK 281 (316)
..+.+|..|++.+ +++++|+.|..|++|+.|+...
T Consensus 42 ~ev~a~~~G~v~~-------i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 42 IEITSRYKGKVAQ-------INFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred EEEecCCCEEEEE-------EEeCCCCEeCCCCEEEEEeccC
Confidence 5789999999998 8999999999999999997543
No 177
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=70.62 E-value=2.8 Score=35.86 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=18.7
Q ss_pred CCccCCCEEecCCeEEEEEec
Q 021186 260 PFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEam 280 (316)
.+|++||+|++||.|+.+.-.
T Consensus 84 ~~v~~Gd~V~~G~~l~~~D~~ 104 (121)
T TIGR00830 84 SHVEEGQRVKKGDPLLEFDLK 104 (121)
T ss_pred EEecCCCEEcCCCEEEEEcHH
Confidence 789999999999999998743
No 178
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=70.39 E-value=5.4 Score=42.96 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=31.1
Q ss_pred CCccCCcCeEEEcCCC----------------------------CCCCCCccCCCEEecCCeEEEEEec
Q 021186 240 PPLKCPMAGTFYRSPA----------------------------PGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~----------------------------p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
..|.||..|++....+ .+=+.+|++||+|++||.|+.++-.
T Consensus 536 ~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D~~ 604 (648)
T PRK10255 536 KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLD 604 (648)
T ss_pred CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEEecCCCEEcCCCEEEEEcHH
Confidence 5899999998775321 1112679999999999999998753
No 179
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=68.67 E-value=4.5 Score=38.47 Aligned_cols=64 Identities=9% Similarity=0.004 Sum_probs=44.6
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
.|.+-++|.+.. ...|+.|++||.++.++=+ -.+.+--|.+-.--+..+..|+.|..|+.|..+
T Consensus 195 ~Vga~~Vg~I~~---------~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~~ 258 (259)
T PRK03140 195 KVGAMFVNSIEL---------THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGTR 258 (259)
T ss_pred EEeeEEeeEEEE---------ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhccc
Confidence 555666677653 4579999999999999977 333344443322224667899999999998754
No 180
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=68.19 E-value=4.5 Score=41.24 Aligned_cols=34 Identities=12% Similarity=0.205 Sum_probs=31.5
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCE-EecCCeEEEEEec
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDR-VQKGQVLCIIEAM 280 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~-VkkGqvL~iIEam 280 (316)
..|.+|..|++.+ +++++|+. |..|++|++|+..
T Consensus 43 ~ei~a~~~G~l~~-------i~v~~g~~~v~vG~~l~~i~~~ 77 (435)
T TIGR01349 43 MEFEAVEEGYLAK-------ILVPEGTKDVPVNKPIAVLVEE 77 (435)
T ss_pred eEEcCCCCEEEEE-------EEECCCCEEecCCCEEEEEecc
Confidence 6899999999999 89999999 9999999999754
No 181
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=68.07 E-value=4.5 Score=32.05 Aligned_cols=20 Identities=50% Similarity=0.647 Sum_probs=16.9
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|+++.|+.|++|++|+.++.
T Consensus 49 ~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 49 WLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp ESS-TT-EEETTCEEEEEEE
T ss_pred EEeCCCCCccCCcEEEEEEe
Confidence 89999999999999999985
No 182
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=67.79 E-value=6 Score=38.15 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=29.9
Q ss_pred ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 281 KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 281 K~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
-...-|+||++|++.. .++-||.|+.||.|+.|.
T Consensus 162 ~~Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~ 195 (256)
T TIGR03309 162 THERVLRAPADGIVTP-TKAIGDSVKKGDVIATVG 195 (256)
T ss_pred cceEEEECCCCeEEee-ccCCCCEEeCCCEEEEEc
Confidence 3467799999999885 999999999999999884
No 183
>COG3608 Predicted deacylase [General function prediction only]
Probab=67.71 E-value=5.9 Score=39.46 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=28.2
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
--|+||..|.|. .+++.||.|+.|+.|++|.+
T Consensus 257 ~~i~Ap~~G~v~-~~v~lGd~VeaG~~la~i~~ 288 (331)
T COG3608 257 EMIRAPAGGLVE-FLVDLGDKVEAGDVLATIHD 288 (331)
T ss_pred ceeecCCCceEE-EeecCCCcccCCCeEEEEec
Confidence 458999999765 99999999999999999853
No 184
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=66.92 E-value=11 Score=41.51 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=28.8
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
-.|-||..|+|.+|.|++|+.|..||+|+.+.
T Consensus 1107 g~igAPMpG~vieikvk~G~kV~Kgqpl~VLS 1138 (1176)
T KOG0369|consen 1107 GHIGAPMPGTVIEIKVKEGAKVKKGQPLAVLS 1138 (1176)
T ss_pred ccccCCCCCceEEEEEecCceecCCCceEeee
Confidence 34669999999999999999999999999863
No 185
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=66.75 E-value=5.7 Score=39.72 Aligned_cols=35 Identities=34% Similarity=0.530 Sum_probs=31.8
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecc
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 281 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK 281 (316)
..|.||..|++.. +++++|+.|..|++|+.|+...
T Consensus 46 ~~i~Ap~~G~i~~-------~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 46 VEIPSPVAGTVAK-------LLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred EEEeCCCCeEEEE-------EecCCCCEeCCCCEEEEEecCC
Confidence 5799999999998 8999999999999999998654
No 186
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=66.62 E-value=9.2 Score=40.02 Aligned_cols=42 Identities=26% Similarity=0.291 Sum_probs=35.0
Q ss_pred EEEEEecceeeEEecCCCeEEE------------------------EEecCCCCccCCCCeEEEEc
Q 021186 274 LCIIEAMKLMNEIEADRSGTIV------------------------EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 274 L~iIEamK~~~eI~Ap~sGtV~------------------------eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...+...+...+|.|+.+|.|. .++++.||.|..|+||++|.
T Consensus 404 ~~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~ 469 (493)
T TIGR02645 404 SDDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIY 469 (493)
T ss_pred ccccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEE
Confidence 3445567888999999999996 46789999999999999984
No 187
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=65.63 E-value=4.2 Score=34.94 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=18.3
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
++|++||+|++||.|+.+.-
T Consensus 84 ~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 84 SHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred EEecCCCEEcCCCEEEEEcH
Confidence 78999999999999999874
No 188
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=65.55 E-value=2.7 Score=36.39 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=16.8
Q ss_pred CCccCCCEEecCCeEEEEEecc
Q 021186 260 PFVKVGDRVQKGQVLCIIEAMK 281 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEamK 281 (316)
++|++||+|++||+|+.+.-.+
T Consensus 88 ~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 88 TLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp ESS-TTSEE-TTEEEEEE-HHH
T ss_pred EEEeCCCEEECCCEEEEEcHHH
Confidence 7899999999999999987543
No 189
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=63.30 E-value=9.2 Score=36.46 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=29.0
Q ss_pred eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 282 LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 282 ~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
....|+||.+|.+. ..++.||.|..||+|++|.
T Consensus 218 ~~~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~ 250 (287)
T cd06251 218 SSVWVRAPQGGLLR-SLVKLGDKVKKGQLLATIT 250 (287)
T ss_pred CCeEEecCCCeEEE-EecCCCCEECCCCEEEEEE
Confidence 34679999999987 5899999999999999883
No 190
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=61.88 E-value=10 Score=36.44 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=28.8
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|+||.+|.+. ..++.|+.|..||.|++|.
T Consensus 231 ~~~v~Ap~~Gi~~-~~~~~G~~V~~Gq~lg~I~ 262 (293)
T cd06255 231 RDWVAAIHGGLFE-PSVPAGDTIPAGQPLGRVV 262 (293)
T ss_pred eEEEecCCCeEEE-EecCCCCEecCCCEEEEEE
Confidence 6789999999877 7799999999999999984
No 191
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=61.74 E-value=16 Score=28.48 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=8.8
Q ss_pred CccCCcCeEEEc
Q 021186 241 PLKCPMAGTFYR 252 (316)
Q Consensus 241 ~V~APmvGtf~~ 252 (316)
.|.||+.|++..
T Consensus 15 ~V~A~~~G~V~~ 26 (96)
T PF01551_consen 15 PVYAPADGKVVF 26 (96)
T ss_dssp EEEESSSEEEEE
T ss_pred EEEeCccEEEEE
Confidence 577888887765
No 192
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=61.66 E-value=9.5 Score=36.78 Aligned_cols=32 Identities=19% Similarity=0.058 Sum_probs=28.5
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..-|+||.+|.+. -.++.||.|+.||.|++|.
T Consensus 229 ~~~v~A~~~Gl~~-~~~~~G~~V~~Gq~lg~i~ 260 (298)
T cd06253 229 VVYVNAETSGIFV-PAKHLGDIVKRGDVIGEIV 260 (298)
T ss_pred eEEEEcCCCeEEE-ECcCCCCEECCCCEEEEEe
Confidence 5689999999877 6689999999999999884
No 193
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=60.98 E-value=7.5 Score=41.01 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=24.3
Q ss_pred CCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 290 RSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 290 ~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|+|.++++++||.|+.|++|+.|+
T Consensus 125 ~eg~I~~W~vkeGD~V~~g~~l~eVE 150 (539)
T PLN02744 125 TEGNIARWLKKEGDKVSPGEVLCEVE 150 (539)
T ss_pred ceeEEEEEEecCCCEecCCCeeEEEe
Confidence 46999999999999999999999986
No 194
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=60.43 E-value=15 Score=34.83 Aligned_cols=47 Identities=9% Similarity=0.063 Sum_probs=36.2
Q ss_pred CccCCCEEec-CCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 261 FVKVGDRVQK-GQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 261 ~VkvGD~Vkk-GqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
.++.|+.+.+ |++|+... -.+|++|++|.|. +-+...|..|+...++
T Consensus 225 ~~~~~~~~~~~G~~la~~~----~~~~~ap~~g~vl---~~p~~~~~~G~~~~~l 272 (272)
T cd06910 225 PFRGGETIPRAGTVIAHDG----GEPIRTPYDDCVL---IMPSLRPLRGQTAVRL 272 (272)
T ss_pred CcCCcceeccCCcEEEEeC----CeEEeCCCCCEEE---EccCCCCCCCceeeeC
Confidence 4677999999 99999943 3899999999754 4466666688877653
No 195
>PRK11637 AmiB activator; Provisional
Probab=59.70 E-value=13 Score=37.40 Aligned_cols=20 Identities=30% Similarity=0.642 Sum_probs=13.6
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
..|++||.|++||+|+.+-.
T Consensus 381 ~~v~~G~~V~~G~~ig~~g~ 400 (428)
T PRK11637 381 ALVSVGAQVRAGQPIALVGS 400 (428)
T ss_pred CCCCCcCEECCCCeEEeecC
Confidence 45677777777777776643
No 196
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=59.32 E-value=12 Score=37.27 Aligned_cols=31 Identities=23% Similarity=0.100 Sum_probs=27.6
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.-|+||..|.+. -.++.||.|+.||+|++|.
T Consensus 290 ~~v~Ap~~Gl~~-~~~~~Gd~V~~G~~lg~I~ 320 (359)
T cd06250 290 EMLYAPAGGMVV-YRAAPGDWVEAGDVLAEIL 320 (359)
T ss_pred EEEeCCCCeEEE-EecCCCCEecCCCEEEEEE
Confidence 459999999877 7789999999999999884
No 197
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=59.26 E-value=11 Score=35.70 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=26.5
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEE
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE 278 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIE 278 (316)
...|+||+.|++.. .++++|+.|.. +.|+.|-
T Consensus 204 ~~~i~AP~dG~V~~-------~~~~~G~~v~~-~~l~~i~ 235 (327)
T TIGR02971 204 LTYVKAPIDGRVLK-------IHAREGEVIGS-EGILEMG 235 (327)
T ss_pred cCEEECCCCeEEEE-------EecCCCCccCC-CccEEEe
Confidence 45899999999998 78999999987 6666553
No 198
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=59.19 E-value=12 Score=35.61 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=29.2
Q ss_pred ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 281 KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 281 K~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.-..-++||.+|.+. ..++.|+.|..||+|++|.
T Consensus 221 ~~~~~v~Ap~~G~~~-~~~~~G~~V~~G~~lg~i~ 254 (288)
T cd06254 221 DDVYYVTSPASGLWY-PFVKAGDTVQKGALLGYVT 254 (288)
T ss_pred cCCEEEecCCCeEEE-EecCCCCEecCCCEEEEEE
Confidence 445678999999877 7789999999999999883
No 199
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=58.96 E-value=10 Score=43.95 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=20.3
Q ss_pred CCCCCCCccCCCEEecCCeEEEE
Q 021186 255 APGEPPFVKVGDRVQKGQVLCII 277 (316)
Q Consensus 255 ~p~~~~~VkvGD~VkkGqvL~iI 277 (316)
.+++-.++..||.|++||+|+.+
T Consensus 947 s~ga~~~~~~g~~v~~Gd~L~~l 969 (1331)
T PRK02597 947 SPGAVLHVRDGDLVQRGDNLALL 969 (1331)
T ss_pred CCCCEEEecCCCEecCCCeEEEE
Confidence 57777899999999999999965
No 200
>PRK04350 thymidine phosphorylase; Provisional
Probab=58.46 E-value=16 Score=38.22 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=33.9
Q ss_pred EEEecceeeEEecCCCeEEE------------------------EEecCCCCccCCCCeEEEEc
Q 021186 276 IIEAMKLMNEIEADRSGTIV------------------------EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 276 iIEamK~~~eI~Ap~sGtV~------------------------eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.+...+...+|.|+.+|.|. .++++.||.|+.|+||++|.
T Consensus 398 ~~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~ 461 (490)
T PRK04350 398 DIPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIH 461 (490)
T ss_pred hcCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEe
Confidence 35566788999999999996 46789999999999999984
No 201
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=58.39 E-value=8.7 Score=30.07 Aligned_cols=21 Identities=48% Similarity=0.639 Sum_probs=16.5
Q ss_pred CCccCCCEEecCCeEEEEEec
Q 021186 260 PFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEam 280 (316)
..|++||.|++||.|+.+...
T Consensus 55 ~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 55 VSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp ESS-TTSEE-TTCEEEEEBSC
T ss_pred ccceecccccCCCEEEecCCC
Confidence 459999999999999999854
No 202
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=58.24 E-value=13 Score=46.19 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.1
Q ss_pred CCCCCCCccCCCEEecCCeEEEE
Q 021186 255 APGEPPFVKVGDRVQKGQVLCII 277 (316)
Q Consensus 255 ~p~~~~~VkvGD~VkkGqvL~iI 277 (316)
+++.-..|+.|+.|+.||+|+.|
T Consensus 2611 p~~~~l~v~~g~~v~~gdilak~ 2633 (2890)
T PRK09603 2611 EPKTSIAISDGSSVEQAEVLAKI 2633 (2890)
T ss_pred CCCcEEEecCCCEecccceEeec
Confidence 34555789999999999999965
No 203
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=57.27 E-value=5.1 Score=36.83 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=26.1
Q ss_pred CCcccceEeeecc--------ccccccccchhhhhcchh
Q 021186 61 SWKCATVVKSQLN--------EVSFFQWFSFEDIFSNFR 91 (316)
Q Consensus 61 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 91 (316)
-|-.|+++.++++ ||+=|+|.|.|||+.+|.
T Consensus 117 E~Eic~V~~~~~~~~~~~npdEV~~~~wv~~e~l~~~~~ 155 (185)
T COG1443 117 ENEICPVLAARLDSALDPNPDEVMDYRWVSPEDLKEMVD 155 (185)
T ss_pred eeeeeeEEEEeecCCCCCChHHhhheeccCHHHHHHhhc
Confidence 3456899888886 999999999999998764
No 204
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=57.10 E-value=14 Score=36.40 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=27.4
Q ss_pred EEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 285 EIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 285 eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
-|+||.+|.+. -.++.|+.|..||+|++|.
T Consensus 257 ~v~Ap~~Gi~~-~~v~~G~~V~~G~~lg~I~ 286 (325)
T TIGR02994 257 FIFAEDDGLIE-FMIDLGDPVSKGDVIARVY 286 (325)
T ss_pred EEEcCCCeEEE-EecCCCCEeCCCCEEEEEE
Confidence 59999999887 7899999999999999884
No 205
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=57.06 E-value=8.8 Score=30.03 Aligned_cols=20 Identities=25% Similarity=0.224 Sum_probs=17.2
Q ss_pred EEecCCCCccCCCCeEEEEc
Q 021186 296 EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 296 eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.++++.||.|+.|+||++|.
T Consensus 35 ~l~~k~Gd~V~~Gd~l~~i~ 54 (75)
T PF07831_consen 35 ELHKKVGDRVEKGDPLATIY 54 (75)
T ss_dssp EESS-TTSEEBTTSEEEEEE
T ss_pred EecCcCcCEECCCCeEEEEE
Confidence 57899999999999999983
No 206
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=56.86 E-value=18 Score=38.78 Aligned_cols=53 Identities=34% Similarity=0.567 Sum_probs=32.9
Q ss_pred CCccCCCEEecCCeEEEEEec-ceeeEEe--cCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 260 PFVKVGDRVQKGQVLCIIEAM-KLMNEIE--ADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEam-K~~~eI~--Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
+.+++||.|..||+|+.+.-. -..+.|- ..+.|+|++| +.+|+. ...+.|+.+
T Consensus 122 p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~y-tv~~~i~~~ 177 (586)
T PRK04192 122 PTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGDY-TVDDTIAVL 177 (586)
T ss_pred cccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCCc-eeeeEEEEE
Confidence 458999999999999998654 2233332 3347888766 344442 223444444
No 207
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=56.66 E-value=14 Score=37.93 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=28.2
Q ss_pred EEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 274 LCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 274 L~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
|.+|+.++-.+-|.+. ...|+|..|+.|..|+||..+
T Consensus 354 vvIldhG~gy~slyg~----~~~i~v~~G~~V~AGepIa~~ 390 (420)
T COG4942 354 VVILDHGGGYHSLYGG----NQSILVNPGQFVKAGEPIALV 390 (420)
T ss_pred EEEEEcCCccEEEecc----cceeeecCCCEeecCCchhhc
Confidence 4467777777766655 346899999999999999765
No 208
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=55.85 E-value=6.8 Score=37.74 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=25.1
Q ss_pred EecCCCeEEEEEecCCCCccCCCCeEEE
Q 021186 286 IEADRSGTIVEIIAEDRKPVSVDTPLFV 313 (316)
Q Consensus 286 I~Ap~sGtV~eIlVe~Gd~V~~GqpL~~ 313 (316)
+-.++-|..-+++|++||.|..||+||.
T Consensus 32 ~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~ 59 (257)
T PF05896_consen 32 LPDDFPGMKPKMLVKEGDRVKAGQPLFE 59 (257)
T ss_pred cCcccCCCCccEEeccCCEEeCCCeeEe
Confidence 4467889999999999999999999996
No 209
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=55.63 E-value=23 Score=35.16 Aligned_cols=20 Identities=5% Similarity=0.237 Sum_probs=15.6
Q ss_pred EEEecCCCCccCCCCeEEEE
Q 021186 295 VEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 295 ~eIlVe~Gd~V~~GqpL~~I 314 (316)
.+++|++||.|..||.|..+
T Consensus 270 ~~i~Vk~Gq~V~~Gq~Ig~~ 289 (319)
T PRK10871 270 DTMLVREQQEVKAGQKIATM 289 (319)
T ss_pred CccccCCcCEECCCCeEEeE
Confidence 34678888888888888765
No 210
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=55.22 E-value=19 Score=37.85 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=33.1
Q ss_pred EEecceeeEEecCCCeEEE------------------------EEecCCCCccCCCCeEEEEc
Q 021186 277 IEAMKLMNEIEADRSGTIV------------------------EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 277 IEamK~~~eI~Ap~sGtV~------------------------eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+-..+...+|.|+.+|.|. .++++.||.|+.|+||++|.
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~ 470 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIY 470 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEE
Confidence 4456778999999999996 46789999999999999984
No 211
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=54.67 E-value=11 Score=38.81 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=30.4
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCC-EEecCCeEEEEEec
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGD-RVQKGQVLCIIEAM 280 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD-~VkkGqvL~iIEam 280 (316)
..|.||..|++.+ +++++|+ .|+.|++|++|+..
T Consensus 46 ~ev~A~~~G~v~~-------i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 46 MEVEAVDEGTLGK-------ILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred eeecCCCceEEEE-------EEecCCCcEeCCCCEEEEEccC
Confidence 5789999999999 8999995 79999999999653
No 212
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=54.23 E-value=24 Score=40.08 Aligned_cols=53 Identities=26% Similarity=0.433 Sum_probs=35.2
Q ss_pred CccCCCEEecCCeEEEEE-ecceeeEEecC--CCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 261 FVKVGDRVQKGQVLCIIE-AMKLMNEIEAD--RSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 261 ~VkvGD~VkkGqvL~iIE-amK~~~eI~Ap--~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.+++||+|..||+++.|. +.-+.+.|-.| ..|+|+.| +..|+. ...+.++.|+
T Consensus 123 ~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~~-~~~~~~~~~~ 178 (1017)
T PRK14698 123 KVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGEY-TIEEVIAKVK 178 (1017)
T ss_pred eeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCCc-ceeeEEEEEE
Confidence 478999999999999885 33334444333 48999977 456762 3345555553
No 213
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=53.67 E-value=24 Score=34.21 Aligned_cols=34 Identities=15% Similarity=-0.023 Sum_probs=29.2
Q ss_pred ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 281 KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 281 K~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+...-|+||.+|.+. -.++.|+.|+.||+|++|.
T Consensus 242 ~~~~~v~A~~~G~~~-~~~~~G~~V~~G~~lg~i~ 275 (316)
T cd06252 242 DARCYVFAPHPGLFE-PLVDLGDEVSAGQVAGRIH 275 (316)
T ss_pred CCcEEEEcCCCeEEE-EecCCCCEEcCCCEEEEEE
Confidence 344679999999876 7799999999999999874
No 214
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=52.89 E-value=29 Score=35.20 Aligned_cols=43 Identities=33% Similarity=0.492 Sum_probs=30.7
Q ss_pred CCccCCCEEecCCeEEEEEecc-eeeEEecC--CCeEEEEEecCCCC
Q 021186 260 PFVKVGDRVQKGQVLCIIEAMK-LMNEIEAD--RSGTIVEIIAEDRK 303 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEamK-~~~eI~Ap--~sGtV~eIlVe~Gd 303 (316)
+.+++||.|..||+++.+.-.. ..+.|-.| ..|+|+.+ +.+|+
T Consensus 53 p~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~ 98 (369)
T cd01134 53 PLVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGD 98 (369)
T ss_pred eccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCC
Confidence 3579999999999999986433 45555444 48998875 34555
No 215
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=50.95 E-value=32 Score=36.91 Aligned_cols=53 Identities=25% Similarity=0.356 Sum_probs=35.6
Q ss_pred CccCCCEEecCCeEEEEE-ecceeeEEec--CCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 261 FVKVGDRVQKGQVLCIIE-AMKLMNEIEA--DRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 261 ~VkvGD~VkkGqvL~iIE-amK~~~eI~A--p~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.+++||.|..|++++.+. +.-..+.|-. .++|+|++| +.+|+. ...+.++.++
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~y-tv~~~i~~~~ 178 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGNY-TVDDTVLEVE 178 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCCc-eeeeEEEEEe
Confidence 589999999999999764 3334444444 447999977 455653 3455666553
No 216
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=48.88 E-value=27 Score=36.10 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=30.6
Q ss_pred ecceeeEEecCCCeEEE-------------------------------EEecCCCCccCCCCeEEEEc
Q 021186 279 AMKLMNEIEADRSGTIV-------------------------------EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 279 amK~~~eI~Ap~sGtV~-------------------------------eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..+...+|+|+.+|.|. +++++.||.|..|++|++|.
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~ 403 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLH 403 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEe
Confidence 35667888888888884 56788999999999999984
No 217
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=48.79 E-value=22 Score=44.21 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=15.6
Q ss_pred EecCCCCccCCCCeEEEE
Q 021186 297 IIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 297 IlVe~Gd~V~~GqpL~~I 314 (316)
+.|++|+.|..|+.|+.|
T Consensus 2616 l~v~~g~~v~~gdilak~ 2633 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKI 2633 (2890)
T ss_pred EEecCCCEecccceEeec
Confidence 568899999999999876
No 218
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=48.09 E-value=29 Score=35.95 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=29.8
Q ss_pred ecceeeEEecCCCeEEE-------------------------------EEecCCCCccCCCCeEEEEc
Q 021186 279 AMKLMNEIEADRSGTIV-------------------------------EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 279 amK~~~eI~Ap~sGtV~-------------------------------eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..+...+|.|+.+|.|. .++++.||.|+.|++|++|.
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEE
Confidence 34667778888888875 46788999999999999984
No 219
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=46.91 E-value=31 Score=35.24 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=31.0
Q ss_pred EEecceeeEEecCCCeEEE-------------------------------EEecCCCCccCCCCeEEEEc
Q 021186 277 IEAMKLMNEIEADRSGTIV-------------------------------EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 277 IEamK~~~eI~Ap~sGtV~-------------------------------eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+-..+...+|.|+.+|.|. .++.+.||.|..|+||++|.
T Consensus 327 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~ 396 (405)
T TIGR02644 327 LPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLY 396 (405)
T ss_pred CCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEe
Confidence 3345677788888888875 46788999999999999984
No 220
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=46.90 E-value=23 Score=35.11 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=30.7
Q ss_pred CCccCCcCeEEEcCCC-C---------------------CCCCCccCCCEEecCCeEEEEEe
Q 021186 240 PPLKCPMAGTFYRSPA-P---------------------GEPPFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~-p---------------------~~~~~VkvGD~VkkGqvL~iIEa 279 (316)
..|+|+..|++...-. . .....|++||.|++||.|+.+-.
T Consensus 230 ~pV~Aaa~G~Vv~ag~~~~gyGn~ViI~H~~g~~S~Yahl~~i~Vk~Gq~V~~Gq~Ig~~G~ 291 (319)
T PRK10871 230 QAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGS 291 (319)
T ss_pred CeEEeccCeEEEEEeeccCCcceEEEEEeCCceEEEeeCCCccccCCcCEECCCCeEEeEcC
Confidence 4788999998776532 1 12467999999999999998864
No 221
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=46.76 E-value=15 Score=29.11 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=18.7
Q ss_pred eEEEEEecCCCCccCCCCeEEEEc
Q 021186 292 GTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 292 GtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
|.-.++++++|+.|..|++|++++
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~ 67 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIE 67 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEE
Confidence 444679999999999999999985
No 222
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=46.33 E-value=14 Score=38.12 Aligned_cols=41 Identities=27% Similarity=0.494 Sum_probs=30.6
Q ss_pred CCCccCCcCeEEEcCC------------------------CCCCCCCccCCCEEecCCeEEEEEe
Q 021186 239 LPPLKCPMAGTFYRSP------------------------APGEPPFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp------------------------~p~~~~~VkvGD~VkkGqvL~iIEa 279 (316)
...|+|+..|.+.... .-+..++++.||+|++||+|+.|-+
T Consensus 339 ~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 339 IKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHA 403 (437)
T ss_pred EEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEEC
Confidence 3467888888776521 2223388999999999999999974
No 223
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=46.11 E-value=19 Score=33.76 Aligned_cols=48 Identities=10% Similarity=-0.004 Sum_probs=34.8
Q ss_pred CCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 021186 265 GDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV 313 (316)
Q Consensus 265 GD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~ 313 (316)
|+.|++||.++.++=+- ...+--|.+-.--+..++.|+.|..|+.|..
T Consensus 189 g~~v~kGee~G~F~fGS-tVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELGS-TVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCCC-eEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 99999999999998754 3333344321222577899999999998864
No 224
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=45.83 E-value=15 Score=38.01 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=31.6
Q ss_pred CCCccCCcCeEEEcC------------------------CCCCCCCCccCCCEEecCCeEEEEEec
Q 021186 239 LPPLKCPMAGTFYRS------------------------PAPGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 239 ~~~V~APmvGtf~~s------------------------p~p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
...|+|+..|.+... |.-+..++++.||+|++||+||.|-+.
T Consensus 340 ~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~ 405 (440)
T PRK05820 340 TKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHAD 405 (440)
T ss_pred EEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeCC
Confidence 457888888888542 122334889999999999999999743
No 225
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=45.43 E-value=33 Score=35.42 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=30.7
Q ss_pred EEecceeeEEecCCCeEEE-------------------------------EEecCCCCccCCCCeEEEEc
Q 021186 277 IEAMKLMNEIEADRSGTIV-------------------------------EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 277 IEamK~~~eI~Ap~sGtV~-------------------------------eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+-.-+...+|.|+.+|.|. .++.+.||.|..|+||++|.
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~ 398 (434)
T PRK06078 329 LPQAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIY 398 (434)
T ss_pred cCCCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEe
Confidence 3345667788888888774 56788999999999999873
No 226
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=45.03 E-value=36 Score=39.49 Aligned_cols=39 Identities=31% Similarity=0.470 Sum_probs=30.2
Q ss_pred CCCCCccCCCEEecCCeEEEEEec-------ceeeEEecCCCeEEE
Q 021186 257 GEPPFVKVGDRVQKGQVLCIIEAM-------KLMNEIEADRSGTIV 295 (316)
Q Consensus 257 ~~~~~VkvGD~VkkGqvL~iIEam-------K~~~eI~Ap~sGtV~ 295 (316)
+.-.+|+.|+.|+++|+|+++-+. |..-.|.++.+|.|-
T Consensus 402 ~s~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~k~i~s~~~Ge~~ 447 (1227)
T TIGR02388 402 GSLLFVEDGQTVDAGQLLAEIALGAVRKSTEKATKDVASDLAGEVK 447 (1227)
T ss_pred CCEEEEECCCEEecCcEEEEeccCCcccceeEEEEEEecCCCceEE
Confidence 334789999999999999999874 345667777777653
No 227
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=44.37 E-value=23 Score=35.46 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=27.0
Q ss_pred cceeeEEecCCCeEEEEEe-------cCCCCccCCCCeEEE
Q 021186 280 MKLMNEIEADRSGTIVEII-------AEDRKPVSVDTPLFV 313 (316)
Q Consensus 280 mK~~~eI~Ap~sGtV~eIl-------Ve~Gd~V~~GqpL~~ 313 (316)
++....|.|..+|+|+++. |+.||.|..||.|..
T Consensus 186 ~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 186 KEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 4456778999999999875 566778999999873
No 228
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=44.29 E-value=24 Score=41.22 Aligned_cols=41 Identities=27% Similarity=0.284 Sum_probs=32.9
Q ss_pred CCCCCCccCCCEEecCCeEEEEEec--------ceeeEEecCCCeEEEE
Q 021186 256 PGEPPFVKVGDRVQKGQVLCIIEAM--------KLMNEIEADRSGTIVE 296 (316)
Q Consensus 256 p~~~~~VkvGD~VkkGqvL~iIEam--------K~~~eI~Ap~sGtV~e 296 (316)
++.-.+|+.|+.|++||+||++... |...+|.++.+|.|.-
T Consensus 402 ~gs~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~~ 450 (1364)
T CHL00117 402 PKSLLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMHW 450 (1364)
T ss_pred CCCEEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEEc
Confidence 3445789999999999999999863 3457899999998643
No 229
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=43.07 E-value=17 Score=37.48 Aligned_cols=43 Identities=30% Similarity=0.254 Sum_probs=32.2
Q ss_pred CCCccCCcCeEEEcCC------------------------CCCCCCCccCCCEEecCCeEEEEEecc
Q 021186 239 LPPLKCPMAGTFYRSP------------------------APGEPPFVKVGDRVQKGQVLCIIEAMK 281 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp------------------------~p~~~~~VkvGD~VkkGqvL~iIEamK 281 (316)
...|+|+..|.+.... .-+..++++.||+|++||+|+.|-+++
T Consensus 335 ~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 335 QIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred EEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 3477888888877522 233347899999999999999997543
No 230
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=42.54 E-value=17 Score=35.47 Aligned_cols=21 Identities=52% Similarity=0.626 Sum_probs=19.4
Q ss_pred CCccCCCEEecCCeEEEEEec
Q 021186 260 PFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEam 280 (316)
|+++.|+.|++||+|+.++..
T Consensus 68 ~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 68 WLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred EEcCCCCEeCCCCEEEEEecc
Confidence 789999999999999999854
No 231
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=40.75 E-value=28 Score=40.31 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=20.3
Q ss_pred CCCCCCCccCCCEEecCCeEEEE
Q 021186 255 APGEPPFVKVGDRVQKGQVLCII 277 (316)
Q Consensus 255 ~p~~~~~VkvGD~VkkGqvL~iI 277 (316)
.+++-.++..||.|++||+|+.+
T Consensus 945 s~ga~~~~~~g~~v~~Gd~L~~l 967 (1227)
T TIGR02388 945 SPGAVLHIEDGDLVQRGDNLALL 967 (1227)
T ss_pred CCCCEEEecCCCEecCCCEEEEE
Confidence 57777899999999999999965
No 232
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=39.18 E-value=24 Score=36.11 Aligned_cols=42 Identities=26% Similarity=0.292 Sum_probs=32.0
Q ss_pred CCCccCCcCeEEEcC------------------------CCCCCCCCccCCCEEecCCeEEEEEec
Q 021186 239 LPPLKCPMAGTFYRS------------------------PAPGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 239 ~~~V~APmvGtf~~s------------------------p~p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
...|+|+..|.+... +.-+...+++.||+|++||+||.|-+.
T Consensus 333 ~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 333 KEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred EEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 457888888888742 223334789999999999999999754
No 233
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=38.95 E-value=27 Score=27.88 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=22.2
Q ss_pred CCCeEEEEEecCC-CCccCCCCeEEEEc
Q 021186 289 DRSGTIVEIIAED-RKPVSVDTPLFVIE 315 (316)
Q Consensus 289 p~sGtV~eIlVe~-Gd~V~~GqpL~~Ie 315 (316)
..-|.|..+.... |+.|..|++|+.|+
T Consensus 26 ~~lG~i~~i~~~~~G~~v~~g~~l~~iE 53 (96)
T cd06848 26 DLLGDIVFVELPEVGTEVKKGDPFGSVE 53 (96)
T ss_pred hhCCCEEEEEecCCCCEEeCCCEEEEEE
Confidence 3468888877655 99999999999986
No 234
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=38.89 E-value=67 Score=34.36 Aligned_cols=54 Identities=28% Similarity=0.357 Sum_probs=34.0
Q ss_pred CCccCCCEEecCCeEEEEEecceeeEE--ecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 260 PFVKVGDRVQKGQVLCIIEAMKLMNEI--EADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEamK~~~eI--~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
+.+++||+|..||+|+.+.-..+...| .-++.|.+..+.+..|+. ...+.|+++
T Consensus 120 P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~y-tv~d~ia~v 175 (588)
T COG1155 120 PAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGEY-TVEDVIATV 175 (588)
T ss_pred cccccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCCc-eeeEEEEEE
Confidence 457999999999999998544422332 234455555566667764 234555554
No 235
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=38.82 E-value=20 Score=37.67 Aligned_cols=42 Identities=31% Similarity=0.362 Sum_probs=32.5
Q ss_pred CCCccCCcCeEEEcCC-----------------CCCCCCCccCCCEEecCCeEEEEEec
Q 021186 239 LPPLKCPMAGTFYRSP-----------------APGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp-----------------~p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
...|+|+..|.+.... .-+...+++.||+|++||+|+.|-+.
T Consensus 413 ~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 413 TADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAE 471 (493)
T ss_pred EEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECC
Confidence 3578899999887532 33344889999999999999999754
No 236
>PRK04350 thymidine phosphorylase; Provisional
Probab=38.59 E-value=20 Score=37.53 Aligned_cols=42 Identities=33% Similarity=0.412 Sum_probs=32.8
Q ss_pred CCCccCCcCeEEEcCC-----------------CCCCCCCccCCCEEecCCeEEEEEec
Q 021186 239 LPPLKCPMAGTFYRSP-----------------APGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp-----------------~p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
...|+||..|.+.... .-+...+++.||+|++||+|+.|-+.
T Consensus 405 ~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~ 463 (490)
T PRK04350 405 THDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAE 463 (490)
T ss_pred EEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecC
Confidence 4578899999887632 33344889999999999999999754
No 237
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=37.68 E-value=12 Score=28.76 Aligned_cols=9 Identities=56% Similarity=1.062 Sum_probs=6.2
Q ss_pred hhhhhcchh
Q 021186 83 FEDIFSNFR 91 (316)
Q Consensus 83 ~~~~~~~~~ 91 (316)
|..||||||
T Consensus 65 Ld~IFs~FC 73 (73)
T PF12631_consen 65 LDNIFSNFC 73 (73)
T ss_dssp HHHHHCTS-
T ss_pred HHHHHHhhC
Confidence 456899998
No 238
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=37.52 E-value=22 Score=37.32 Aligned_cols=42 Identities=31% Similarity=0.369 Sum_probs=32.4
Q ss_pred CCCccCCcCeEEEcCC-----------------CCCCCCCccCCCEEecCCeEEEEEec
Q 021186 239 LPPLKCPMAGTFYRSP-----------------APGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp-----------------~p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
...|+||..|.+.... .-+-..+++.||+|++||+|+.|-+.
T Consensus 414 ~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~ 472 (500)
T TIGR03327 414 TYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAE 472 (500)
T ss_pred EEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECC
Confidence 3578888888887532 33344889999999999999999753
No 239
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=37.06 E-value=28 Score=36.36 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=24.0
Q ss_pred CeEEEEEecCCCCccCCCCeEEEEc
Q 021186 291 SGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 291 sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.|.|+.+.-++||.+..|+.|++||
T Consensus 52 eGnIvsW~kKeGdkls~GDvl~EVE 76 (470)
T KOG0557|consen 52 EGNIVSWKKKEGDKLSAGDVLLEVE 76 (470)
T ss_pred CCceeeEeeccCCccCCCceEEEEe
Confidence 6999999999999999999999997
No 240
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=36.61 E-value=64 Score=34.61 Aligned_cols=52 Identities=33% Similarity=0.547 Sum_probs=33.5
Q ss_pred CccCCCEEecCCeEEEE-EecceeeEEe--cCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 261 FVKVGDRVQKGQVLCII-EAMKLMNEIE--ADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 261 ~VkvGD~VkkGqvL~iI-EamK~~~eI~--Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
.+++||.|..||+++.+ |+.-+.+.|- ..+.|+|+.| +.+|+. ...++++.+
T Consensus 120 ~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~~-~~~~~v~~~ 174 (578)
T TIGR01043 120 TVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGDY-TVEDTIAVV 174 (578)
T ss_pred ccccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCCc-eeeeeEEEE
Confidence 48999999999999988 4444444443 3458998877 345552 223444443
No 241
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.33 E-value=70 Score=28.66 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.2
Q ss_pred CCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 289 DRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 289 p~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
|+.|.++-..+..|+.|-.|++++-+.
T Consensus 97 PvEGYvVtpIaDvG~RvrkGd~~AAvt 123 (161)
T COG4072 97 PVEGYVVTPIADVGNRVRKGDPFAAVT 123 (161)
T ss_pred ecCcEEEEEeecccchhcCCCceeEEE
Confidence 778999999999999999999998763
No 242
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=35.92 E-value=34 Score=30.58 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=25.5
Q ss_pred CCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 265 GDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 265 GD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
|-.+++|+-||.+++. |..+-+.+..|+.|..|+.|+.+.
T Consensus 73 ~~~l~~G~~L~l~~ve-----------G~~v~~i~~~G~rV~~gd~lA~v~ 112 (150)
T PF09891_consen 73 GILLKKGTELCLVPVE-----------GYQVYPIVDEGDRVRKGDRLAYVT 112 (150)
T ss_dssp EEEE-TT-B-EEEEEE-----------SSEEEESS-TSEEE-TT-EEEEEE
T ss_pred EEEECCCCEEEEEEec-----------ceEEEEEcccCcEeccCcEEEEEE
Confidence 3347788888888754 555567888999999999999874
No 243
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=35.81 E-value=87 Score=36.93 Aligned_cols=74 Identities=12% Similarity=0.218 Sum_probs=42.7
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCC--EEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGD--RVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD--~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
..|+||..|++.-.........-.-|+ .+.+...+.+|+.......+.-|+.. .++|++|+.|+.||.|+++.|
T Consensus 350 ~~i~a~~~G~i~~~~~~~~~~rt~~g~~~~~~~~~~~~~i~~~~~~~~~~ip~gs---~l~v~~g~~V~~~q~iae~~~ 425 (1364)
T CHL00117 350 EQVRAPFNGKIKFNEDLVHPTRTRHGHPAFLCKIDLYVTIESEDIIHNVNIPPKS---LLLVQNDQYVESEQVIAEIRA 425 (1364)
T ss_pred eeEEeccCeEEEEecceeeEEeCcCCEEEEEEecceEEEEeCCCeEEEEEeCCCC---EEEEeCcCEEcCCCEEEEECC
Confidence 479999999987521110111111122 12222233344544444455555544 378999999999999999865
No 244
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=35.17 E-value=85 Score=28.35 Aligned_cols=70 Identities=14% Similarity=0.098 Sum_probs=38.5
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCE--------EecCC-eEEEEEecc--ee-eEEecCCCeEEEEEecCCCCcc
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDR--------VQKGQ-VLCIIEAMK--LM-NEIEADRSGTIVEIIAEDRKPV 305 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~--------VkkGq-vL~iIEamK--~~-~eI~Ap~sGtV~eIlVe~Gd~V 305 (316)
+...+++|+.|++.. .....|+. -.+++ .++.+|+.. +. ..|-+-..+.|. ..+++|+.+
T Consensus 71 DyHr~haP~~G~v~~-------~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~v~~~~~~~i~-~~~~~g~~v 142 (189)
T TIGR00164 71 DVHVNRAPAGGKVTY-------VKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQIAGFVARRIV-CYVKEGEKV 142 (189)
T ss_pred ccceEEcccccEEEE-------EEEECCeEeecccCcccccceeEEEEEEcCCCCEEEEEECeEEccEEE-EecCCCCEE
Confidence 345788999988776 22333331 12233 346666642 22 222222223332 356789999
Q ss_pred CCCCeEEEEc
Q 021186 306 SVDTPLFVIE 315 (316)
Q Consensus 306 ~~GqpL~~Ie 315 (316)
..|+.+..++
T Consensus 143 ~kGeeiG~f~ 152 (189)
T TIGR00164 143 SRGQRIGMIR 152 (189)
T ss_pred ecCcEEEEEe
Confidence 9999887764
No 245
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=34.99 E-value=91 Score=28.52 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=41.2
Q ss_pred CCCccCCcCeEEEcC-CCCCCCCCc-cCCCEEecCCeEEEEEecc---e-eeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 021186 239 LPPLKCPMAGTFYRS-PAPGEPPFV-KVGDRVQKGQVLCIIEAMK---L-MNEIEADRSGTIVEIIAEDRKPVSVDTPLF 312 (316)
Q Consensus 239 ~~~V~APmvGtf~~s-p~p~~~~~V-kvGD~VkkGqvL~iIEamK---~-~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~ 312 (316)
...++||+.|++... +-|+.-+.+ .......-...+..+|+.+ + +..|-+-..+.|. ..+++|+.+..|+.+.
T Consensus 91 ~H~~~aP~~G~V~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~-~~~~~g~~v~kGe~~G 169 (206)
T PRK05305 91 VHVNRAPVSGTVTKVEYRPGKFLNAFLDKASEENERNAVVIETADGGEIGVVQIAGLIARRIV-CYVKEGDEVERGERFG 169 (206)
T ss_pred CCEEEeCccCEEEEEEEECCeEEecCCCcccccCceEEEEEEeCCCCEEEEEEeCeEEccEEE-EeCCCCCEEccCcEEe
Confidence 356789999988762 122221111 1111222234556777642 2 2333333344444 3568899999999887
Q ss_pred EEc
Q 021186 313 VIE 315 (316)
Q Consensus 313 ~Ie 315 (316)
.++
T Consensus 170 ~f~ 172 (206)
T PRK05305 170 LIR 172 (206)
T ss_pred EEe
Confidence 764
No 246
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=33.45 E-value=31 Score=31.36 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=18.0
Q ss_pred CCCccCCCEEecCCeEEEEE
Q 021186 259 PPFVKVGDRVQKGQVLCIIE 278 (316)
Q Consensus 259 ~~~VkvGD~VkkGqvL~iIE 278 (316)
...|++||.|++||+|+.+-
T Consensus 215 ~~~V~~G~~V~~G~~Ig~~G 234 (277)
T COG0739 215 SILVKEGQKVKAGQVIGYVG 234 (277)
T ss_pred hhccCCCCEeccCCEEEEec
Confidence 47889999999999999884
No 247
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=32.88 E-value=70 Score=26.42 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=28.1
Q ss_pred EEecCCeEEEEEe-cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 267 RVQKGQVLCIIEA-MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 267 ~VkkGqvL~iIEa-mK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
...++..|-.+.. .++.++++ -..|.-.+.+|+.||.|..||.|+..
T Consensus 14 ~~s~~~~i~~~~~p~~v~ipL~-qh~G~~~~p~V~~Gd~V~~GQ~Ia~~ 61 (101)
T PF13375_consen 14 ELSKDKPIEEAPLPKKVVIPLR-QHIGAPAEPVVKVGDKVKKGQLIAEA 61 (101)
T ss_pred ccccCCCeEECCCcCEEEEECc-ccCCCcceEEEcCCCEEcCCCEEEec
Confidence 3444444443332 22333332 22344567889999999999999864
No 248
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=32.42 E-value=41 Score=33.85 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=25.4
Q ss_pred eeeEEecCCCeEEEEEec-------CCCCccCCCCeEEE
Q 021186 282 LMNEIEADRSGTIVEIIA-------EDRKPVSVDTPLFV 313 (316)
Q Consensus 282 ~~~eI~Ap~sGtV~eIlV-------e~Gd~V~~GqpL~~ 313 (316)
....|.|..+|+|+++.+ +.||.|..||.|..
T Consensus 185 ~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 185 EPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred CCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 345788999999998764 56677999999873
No 249
>PRK10718 RpoE-regulated lipoprotein; Provisional
Probab=31.78 E-value=1e+02 Score=28.77 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=42.9
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecc---eeeEEecCCCeEEEEEecCCCCcc
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK---LMNEIEADRSGTIVEIIAEDRKPV 305 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK---~~~eI~Ap~sGtV~eIlVe~Gd~V 305 (316)
.|..-..|.+ +++.|.....|+++-+.|+|| +.+.|.-+ .|+|.+|.|.+++..
T Consensus 59 aI~~~L~g~y----------~lrsGm~t~~G~iv~~~qa~~~d~v~lvi~G~-~G~V~rI~V~d~~i~ 115 (191)
T PRK10718 59 AIADALDGDY----------RLRSGMKTANGNVVRFFQAMKGDQVAMVINGQ-QGTVSRIDVLDSDIP 115 (191)
T ss_pred HHHhhcCCCc----------eEeccccCCCCCEEEeeeeecCCceEEEEECC-CCcEEEEEEeCCCCC
Confidence 4566666633 368899999999999888876 66667777 999999999999885
No 250
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=31.20 E-value=41 Score=32.47 Aligned_cols=49 Identities=12% Similarity=-0.000 Sum_probs=34.3
Q ss_pred CCEEecCCeEEEEEecceeeEEecCCCeEEE-EEecCCCCccCCCCeEEEEc
Q 021186 265 GDRVQKGQVLCIIEAMKLMNEIEADRSGTIV-EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 265 GD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~-eIlVe~Gd~V~~GqpL~~Ie 315 (316)
|..|++||.++.++=+- .+.+--|.+ ++. ...+..|+.|..|+.|..+.
T Consensus 237 ~~~v~kGee~G~F~fGS-tVvllfe~~-~~~~~~~v~~g~kV~~Ge~ig~~~ 286 (288)
T PRK00044 237 AITLKKGAEMGRFKLGS-TVINLFPPG-KVQLAEQLQAGSVVRMGQPLAHIT 286 (288)
T ss_pred CCeEccccEeecccCCC-eEEEEEeCC-CceeccccCCCCEEEcChhhcCcc
Confidence 77999999999998653 222333332 332 34578999999999998653
No 251
>PRK06149 hypothetical protein; Provisional
Probab=30.07 E-value=34 Score=38.28 Aligned_cols=40 Identities=30% Similarity=0.495 Sum_probs=29.5
Q ss_pred CCccCCcCeEEEcCCCC-----CC---------CCCccCCCEEecCCeEEEEEe
Q 021186 240 PPLKCPMAGTFYRSPAP-----GE---------PPFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p-----~~---------~~~VkvGD~VkkGqvL~iIEa 279 (316)
..|.||+.|++.....- +. ...+++||.|++||.||.+-.
T Consensus 443 t~v~Ap~~G~v~~~~~~~~~l~~~~~f~~l~g~~~~~~~g~~v~~G~~~~~~g~ 496 (972)
T PRK06149 443 TAVAAPFAGTVVRDGQGHLTLRGDALELHLDGVEPAVEDGAAVRAGDPLGSVAG 496 (972)
T ss_pred CeEECccCcEEEEecCCceEecCCCcEEEEecccccCCCCCeecCCchheecCC
Confidence 58999999998874220 00 122889999999999998875
No 252
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=28.70 E-value=26 Score=38.35 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=27.0
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEec
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
+.|.|-|+|.+.. -+++||.|++||.|+...=+
T Consensus 886 VaiGAmMVGSi~l--------t~kEgd~V~~gdELGYFkFG 918 (975)
T KOG2419|consen 886 VAIGAMMVGSILL--------TRKEGDHVKKGDELGYFKFG 918 (975)
T ss_pred EeecceeeeeEEE--------EeecCcccccccccceEeeC
Confidence 4788999998875 68999999999988765543
No 253
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=27.69 E-value=43 Score=32.06 Aligned_cols=20 Identities=55% Similarity=0.750 Sum_probs=18.9
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|+++.|+.|++|++|+.|+.
T Consensus 62 ~~~~dG~~v~~g~~i~~i~G 81 (268)
T cd01572 62 WLVKDGDRVEPGQVLATVEG 81 (268)
T ss_pred EEeCCCCEecCCCEEEEEEE
Confidence 78999999999999999985
No 254
>PRK13380 glycine cleavage system protein H; Provisional
Probab=27.38 E-value=53 Score=28.80 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=26.3
Q ss_pred eEEecCCCeEEEEEecC-CCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIAE-DRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe-~Gd~V~~GqpL~~Ie 315 (316)
.......-|.|..+.+. .|+.|..|++|+.|+
T Consensus 36 td~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IE 68 (144)
T PRK13380 36 TDYAQTMAGDVVFVRLKELGKKVEKGKPVATLE 68 (144)
T ss_pred CHHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEE
Confidence 33445667889999886 899999999999986
No 255
>PF12166 DUF3595: Protein of unknown function (DUF3595); InterPro: IPR021999 This family of proteins is functionally uncharacterised.This family of proteins is found in eukaryotes. Proteins in this family are typically between 578 and 2525 amino acids in length.
Probab=27.16 E-value=19 Score=35.97 Aligned_cols=16 Identities=50% Similarity=1.279 Sum_probs=14.2
Q ss_pred cccccccchhhhhcch
Q 021186 75 VSFFQWFSFEDIFSNF 90 (316)
Q Consensus 75 ~~~~~~~~~~~~~~~~ 90 (316)
+.+|+||-+||||.+.
T Consensus 22 l~l~~w~~~Edi~~~l 37 (422)
T PF12166_consen 22 LSLFDWFKLEDIYANL 37 (422)
T ss_pred ehHHHHHhHHHHHHHH
Confidence 5689999999999886
No 256
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=26.62 E-value=1.1e+02 Score=38.52 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=44.2
Q ss_pred CCccCCCEEecCCeEEEEEec-----------c------e------eeEEecCCCeEEE---------------------
Q 021186 260 PFVKVGDRVQKGQVLCIIEAM-----------K------L------MNEIEADRSGTIV--------------------- 295 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEam-----------K------~------~~eI~Ap~sGtV~--------------------- 295 (316)
|...-|..|.-|+.|++|-+. . . ...|+|+++|+|.
T Consensus 2322 ~~La~~~~V~iGeaVGiIAAQSIGEPGTQLTMRTFHtGGvas~~~~~~~i~~~~~G~v~~~~~~~v~~~~g~~iv~sr~~ 2401 (2836)
T PRK14844 2322 RDLATGKIVSIGEAVGVIAAQSVGEPGTQLTMRTFHIGGVMTRGVESSNIIASINAKIKLNNSNIIIDKNGNKIVISRSC 2401 (2836)
T ss_pred ccccCCCcccccccceeeeecccCCCcceeeeeheeeccccccccccceeEeccCceEEeccceeEEcCCCcEEEEeccc
Confidence 667788899999999988542 1 1 2457788888774
Q ss_pred ---------------------EEecCCCCccCCCCeEEEEcC
Q 021186 296 ---------------------EIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 296 ---------------------eIlVe~Gd~V~~GqpL~~IeP 316 (316)
.++|++|+.|+.|+.|+...|
T Consensus 2402 ~~~i~d~~g~~~~~~~i~yga~l~v~~g~~V~~g~~la~wdp 2443 (2836)
T PRK14844 2402 EVVLIDSLGSEKLKHSVPYGAKLYVDEGGSVKIGDKVAEWDP 2443 (2836)
T ss_pred EEEEEecCCcEEEEEecccccEEEecCCCEecCCCEEEEEcC
Confidence 357899999999999998765
No 257
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.47 E-value=46 Score=32.20 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=18.8
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|+++.|+.|++|++|+.++.
T Consensus 68 ~~~~dG~~v~~g~~i~~~~G 87 (277)
T PRK08072 68 LHKKDGDLVKKGEIIATVQG 87 (277)
T ss_pred EEeCCCCEEcCCCEEEEEEE
Confidence 89999999999999999985
No 258
>PRK02693 apocytochrome f; Reviewed
Probab=25.54 E-value=1.2e+02 Score=29.98 Aligned_cols=60 Identities=25% Similarity=0.340 Sum_probs=37.1
Q ss_pred CCCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEeccee---eEEecCCCeEEEEEecCCCCccCCCCeEE
Q 021186 236 KSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLM---NEIEADRSGTIVEIIAEDRKPVSVDTPLF 312 (316)
Q Consensus 236 ~~~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~---~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~ 312 (316)
.++-....|+..|++.. +..+ ++|.-...|++.+-. ..|.+. -+++|.+||.|..||+|-
T Consensus 193 kSNN~v~~as~~G~i~~---------I~~~---e~Gg~~vtI~~~dG~~v~~~iP~G-----peliV~eG~~v~~dqpLT 255 (312)
T PRK02693 193 KSNNNVFTASAAGTITS---------IETG---EDGGYVVTITTEDGEAVTETIPAG-----PELIVKEGDTVEAGDPLT 255 (312)
T ss_pred cccCceecccCCcEEEE---------EEec---CCCceEEEEEcCCCCEEEEecCCC-----CeEEEecCcEEecCCccc
Confidence 34456788999999887 2222 235444555544322 222222 268899999999999984
No 259
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=25.54 E-value=1.5e+02 Score=26.82 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=47.2
Q ss_pred CCCCCccCCcCeEEEcC-CCCCCCCCccCCCE-------EecCCeEEEEEecc---eeeEEecCCCeEEEEEec--CCCC
Q 021186 237 SSLPPLKCPMAGTFYRS-PAPGEPPFVKVGDR-------VQKGQVLCIIEAMK---LMNEIEADRSGTIVEIIA--EDRK 303 (316)
Q Consensus 237 ~~~~~V~APmvGtf~~s-p~p~~~~~VkvGD~-------VkkGqvL~iIEamK---~~~eI~Ap~sGtV~eIlV--e~Gd 303 (316)
.+.....+|+.|++... .-|+.-+.|..... ..--..+..|+... ++.+|-+-.-|.|. ..+ +.|+
T Consensus 79 ~DyHr~haPv~G~v~~~~~i~G~~~~v~~~~~~~~~~~~~~NeR~~~~i~~~~G~v~~v~Vga~~v~~I~-~~~~~~~g~ 157 (202)
T PF02666_consen 79 FDYHRNHAPVDGRVEEVRYIPGKLLPVNPPALSHIPGLFAENERVVLVIETKFGKVAVVQVGALLVGSIV-LTVDPKEGD 157 (202)
T ss_pred CcceEEEecCCEEEEEEEEECccccccChHHhhccCCeeEEeeEEEEEEEECCCEEEEEEeccceeceeE-EEecccCCC
Confidence 35568999999998763 11222222222111 12234566676532 45666677777777 445 5899
Q ss_pred ccCCCCeEEEEc
Q 021186 304 PVSVDTPLFVIE 315 (316)
Q Consensus 304 ~V~~GqpL~~Ie 315 (316)
.|..|+.|..++
T Consensus 158 ~v~kG~e~G~f~ 169 (202)
T PF02666_consen 158 EVKKGEELGYFR 169 (202)
T ss_pred EEecCcEeCEEe
Confidence 999999887664
No 260
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=25.16 E-value=2e+02 Score=27.48 Aligned_cols=35 Identities=14% Similarity=-0.121 Sum_probs=25.3
Q ss_pred CCeEEEEEecceeeEEecCCCeEEEEEecCCCCcc
Q 021186 271 GQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPV 305 (316)
Q Consensus 271 GqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V 305 (316)
|..+.+--+-.-.+-+.+|++|+|.+...-+|+.-
T Consensus 116 g~~~~iyLsp~dYHr~hsP~~G~v~~~~~ipG~~~ 150 (265)
T PRK03934 116 FDYINFYLSPKDYHRYHAPCDLEILEARYIPGKLY 150 (265)
T ss_pred cEEEEEEECcceEEEEeccCCcEEEEEEEcCCeee
Confidence 44443334445567788999999999999999753
No 261
>PRK02259 aspartoacylase; Provisional
Probab=25.00 E-value=1e+02 Score=29.49 Aligned_cols=61 Identities=11% Similarity=-0.018 Sum_probs=43.0
Q ss_pred CccCC---cCeEEEcCCCCCCCCCccCC--CEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 021186 241 PLKCP---MAGTFYRSPAPGEPPFVKVG--DRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF 312 (316)
Q Consensus 241 ~V~AP---mvGtf~~sp~p~~~~~VkvG--D~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~ 312 (316)
..+++ ..|.|. +.|+.| +.|++||+|+.+ .+.-...+.++..|+..- +++...++.|..++
T Consensus 216 ~pr~~~g~~~g~vh--------p~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~pvf--ine~ay~~kg~a~~ 281 (288)
T PRK02259 216 YPRDENGQIAAMIH--------PQLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYPVF--INEAAYYEKGIAMS 281 (288)
T ss_pred CCCCCCCCEeEEec--------hhhcCCCccccCCCCcceec-CCCCEEEecCCCCEEeEE--ecHHHHHhhhhHhh
Confidence 44666 556665 468778 559999999998 666778889998887654 44556666665543
No 262
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=24.93 E-value=46 Score=28.75 Aligned_cols=55 Identities=27% Similarity=0.314 Sum_probs=24.9
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecce---eeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL---MNEIEADRSGTIVEIIAEDRKPVSVDTPLF 312 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~---~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~ 312 (316)
...|+..|++.. +. . -++|.-...|++..- ...|.+. -+++|.+||.|..||||-
T Consensus 4 v~~As~~G~I~~-------I~--~---~ekgg~~vtI~~~dG~~v~~~IP~G-----peLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 4 VYNASAAGTITK-------IT--R---KEKGGYEVTIETSDGETVVETIPAG-----PELIVSEGQSVKADQPLT 61 (118)
T ss_dssp --B-SSSEEEEE-------EE--E---ETTSEEEEEEETTTSEEEEEEEESS-----S-BS--TT-EETTT-BSB
T ss_pred eEcccCCeEEEE-------EE--E---cCCCCEEEEEECCCCCEEEEecCCC-----CeEEEcCCCEEecCCccc
Confidence 456777888776 11 1 113444445554332 2223332 257788888888888873
No 263
>PF06572 DUF1131: Protein of unknown function (DUF1131); InterPro: IPR010938 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2QZB_B.
Probab=24.30 E-value=84 Score=28.78 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=32.0
Q ss_pred ccCCCEEecCCeEEEEEecc---eeeEEecCCCeEEEEEecCCCCcc
Q 021186 262 VKVGDRVQKGQVLCIIEAMK---LMNEIEADRSGTIVEIIAEDRKPV 305 (316)
Q Consensus 262 VkvGD~VkkGqvL~iIEamK---~~~eI~Ap~sGtV~eIlVe~Gd~V 305 (316)
++.|-+-..|+++-++|+|| +.+.|.-+-.|+|.+|.|.+.+..
T Consensus 49 lrsGm~t~nG~~v~~~qA~~~d~v~lvI~G~~~G~V~rI~V~d~~i~ 95 (171)
T PF06572_consen 49 LRSGMQTANGNIVSFFQAMKDDQVKLVISGDPKGTVSRIEVMDPDIK 95 (171)
T ss_dssp EEEEEEEETTEEEEEEEEEETTEEEEEEEE----BEEEEEE--TTS-
T ss_pred EecceecCCCCeEEeeeeecCCeEEEEEecCCCCcEEEEEEeccccC
Confidence 47788999999999999875 677788777999999999998875
No 264
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.32 E-value=56 Score=31.85 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=18.8
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|+++.|+.|++|++|+.++.
T Consensus 69 ~~~~dG~~v~~G~~i~~~~G 88 (281)
T PRK06543 69 LAVADGERFEAGDILATVTG 88 (281)
T ss_pred EEeCCCCEecCCCEEEEEEe
Confidence 79999999999999999984
No 265
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=23.27 E-value=56 Score=31.82 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=18.8
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|+++.|+.|++|++|+.++.
T Consensus 65 ~~~~dG~~v~~G~~i~~~~G 84 (284)
T PRK06096 65 DAVSDGSQANAGQRLISAQG 84 (284)
T ss_pred EEeCCCCEeCCCCEEEEEEe
Confidence 89999999999999999984
No 266
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=22.91 E-value=55 Score=31.28 Aligned_cols=40 Identities=25% Similarity=0.446 Sum_probs=31.6
Q ss_pred CccC-CcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeE
Q 021186 241 PLKC-PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNE 285 (316)
Q Consensus 241 ~V~A-PmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~e 285 (316)
.|++ .|-|-++. ..|+|.+|..|++=|+.|.||.+|....
T Consensus 167 ~vrsi~~~gl~wg-----asklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 167 CVRSIEMDGLVWG-----ASKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred HHHHhhhccceec-----cccccccccceeeEEEEEEEEcCccccc
Confidence 3444 35677775 4599999999999999999999997654
No 267
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.66 E-value=60 Score=31.43 Aligned_cols=20 Identities=40% Similarity=0.403 Sum_probs=18.9
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|+++.|+.|++|++|+.++.
T Consensus 70 ~~~~dG~~v~~g~~i~~i~G 89 (277)
T PRK05742 70 WQVADGERVSANQVLFHLEG 89 (277)
T ss_pred EEeCCCCEEcCCCEEEEEEE
Confidence 88999999999999999985
No 268
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=22.19 E-value=32 Score=29.71 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=16.9
Q ss_pred EEEcCCCCCCCCCccCCCEEecCCeEE
Q 021186 249 TFYRSPAPGEPPFVKVGDRVQKGQVLC 275 (316)
Q Consensus 249 tf~~sp~p~~~~~VkvGD~VkkGqvL~ 275 (316)
.+...-+++-+..|++||.|+.||.|-
T Consensus 35 ~v~~~IP~GpeLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 35 TVVETIPAGPELIVSEGQSVKADQPLT 61 (118)
T ss_dssp EEEEEEESSS-BS--TT-EETTT-BSB
T ss_pred EEEEecCCCCeEEEcCCCEEecCCccc
Confidence 455555677788999999999999873
No 269
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=22.15 E-value=1.4e+02 Score=27.13 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=24.9
Q ss_pred EEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 276 IIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 276 iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
+|+-..-...+.+..+ +++|+.|+.|..||.|..+
T Consensus 199 ~i~H~~g~~t~Y~Hl~----~~~V~~G~~V~~G~~Ig~~ 233 (277)
T COG0739 199 IIKHGDGYVTVYAHLS----SILVKEGQKVKAGQVIGYV 233 (277)
T ss_pred EEEcCCceEeeehhhh----hhccCCCCEeccCCEEEEe
Confidence 3444444444555544 7899999999999999875
No 270
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=21.74 E-value=1.3e+02 Score=22.09 Aligned_cols=31 Identities=13% Similarity=0.323 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhCCCcEEEEEe--CCeEEEEEe
Q 021186 147 SQVSSLIKLVDSRDIVELQLKQ--LDCELIIRK 177 (316)
Q Consensus 147 ~qI~eLIklld~S~IsELeLk~--~d~~L~LrK 177 (316)
...+.|.+++++.+..-+++++ +.++|.|+|
T Consensus 38 ~~~~di~~~~~~~g~~~~~~~~~~~~~~i~I~K 70 (70)
T PF01206_consen 38 AAVEDIPRWCEENGYEVVEVEEEGGEYRILIRK 70 (70)
T ss_dssp THHHHHHHHHHHHTEEEEEEEESSSSEEEEEEE
T ss_pred cHHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEC
Confidence 3445566677777776666644 458888876
No 271
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=21.57 E-value=83 Score=31.67 Aligned_cols=73 Identities=11% Similarity=0.027 Sum_probs=47.4
Q ss_pred CCccCCcCeEEEcCCCCC-----------------CCCCccCCCEEecCCeEEEEEeccee-eEEecCCCeEEEEEecCC
Q 021186 240 PPLKCPMAGTFYRSPAPG-----------------EPPFVKVGDRVQKGQVLCIIEAMKLM-NEIEADRSGTIVEIIAED 301 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~-----------------~~~~VkvGD~VkkGqvL~iIEamK~~-~eI~Ap~sGtV~eIlVe~ 301 (316)
..|.|-++|.+...-.+. ..|.-..+..|++||.++..+-+-.. +-.+++. . -+..++.
T Consensus 249 v~VGA~~VGsI~~~~~~~l~tn~~~~~~~~~~~~~~~~~y~~~~~v~KGeElG~F~~GSTVVllFe~~~--~-~~~~l~~ 325 (353)
T PTZ00403 249 AAISAYNVGNIKIINDEELVTNNLRTQLSYMGGDINTKIYDSYKSVEVGDEVGEFRMGSSIVVIFENKK--N-FSWNVKP 325 (353)
T ss_pred EEEeeEEEEEEEEEeccccccccccccccccCCcceeeecCCCCcccccceeeEeccCCeEEEEEeCCC--c-CCcccCC
Confidence 478888899886321110 01222335689999999988865433 3334553 2 2456889
Q ss_pred CCccCCCCeEEEEc
Q 021186 302 RKPVSVDTPLFVIE 315 (316)
Q Consensus 302 Gd~V~~GqpL~~Ie 315 (316)
|+.|..||.|..+.
T Consensus 326 g~~Vr~Gq~lg~~~ 339 (353)
T PTZ00403 326 NQTVSVGQRLGGVG 339 (353)
T ss_pred CCEEEeeeeccccC
Confidence 99999999998775
No 272
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=21.55 E-value=1.4e+02 Score=31.00 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=0.0
Q ss_pred EEecceeeEEecCCCeEE-------------------------------EEEecCCCCccCCCCeEEEE
Q 021186 277 IEAMKLMNEIEADRSGTI-------------------------------VEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 277 IEamK~~~eI~Ap~sGtV-------------------------------~eIlVe~Gd~V~~GqpL~~I 314 (316)
+...+...+|.|..+|.| ..++.+.||.|+.|+||++|
T Consensus 330 l~~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge~Vk~Gd~l~ti 398 (435)
T COG0213 330 LPVAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGEKVKKGDPLATI 398 (435)
T ss_pred cccCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCCeeccCCeEEEE
No 273
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=21.42 E-value=65 Score=30.72 Aligned_cols=21 Identities=52% Similarity=0.615 Sum_probs=19.2
Q ss_pred CCccCCCEEecCCeEEEEEec
Q 021186 260 PFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEam 280 (316)
|+++.|+.|++|++|+.|+..
T Consensus 61 ~~~~dG~~v~~g~~i~~i~G~ 81 (269)
T cd01568 61 WLVKDGDRVEAGQVLLEVEGP 81 (269)
T ss_pred EEeCCCCEecCCCEEEEEEEc
Confidence 789999999999999999853
No 274
>PF06670 Etmic-2: Microneme protein Etmic-2; InterPro: IPR009556 This family consists of several Microneme protein Etmic-2 sequences from Eimeria tenella. Etmic-2 is a 50 kDa acidic protein, which is found within the microneme organelles of E. tenella sporozoites and merozoites [].
Probab=21.32 E-value=41 Score=32.91 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=21.3
Q ss_pred ccccccccchhhh-----------hcchhhhcccccC
Q 021186 74 EVSFFQWFSFEDI-----------FSNFRSFLDSLLG 99 (316)
Q Consensus 74 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 99 (316)
||+.|-|++-|-| ||.|||+..+.-.
T Consensus 220 ~vr~~~wi~teylcsrrgvsrifkysdfcslcrdas~ 256 (379)
T PF06670_consen 220 EVRVLAWISTEYLCSRRGVSRIFKYSDFCSLCRDAST 256 (379)
T ss_pred EEEEEEeecchhhhcccccchhhcccchhhhhccccC
Confidence 7999999999876 5789999877543
No 275
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.30 E-value=67 Score=31.30 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=18.6
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|+++.|+.|++|++|+.++.
T Consensus 76 ~~~~dG~~v~~g~~i~~~~G 95 (288)
T PRK07428 76 PLVAEGAACESGQVVAEIEG 95 (288)
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 78999999999999999984
No 276
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=21.17 E-value=95 Score=29.72 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.2
Q ss_pred CeEEEEEecCCCCccCCCCeEEEEc
Q 021186 291 SGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 291 sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+|.-.++.+++|+.|..|++|++|+
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~ 80 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVE 80 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEE
Confidence 5666779999999999999999985
No 277
>PRK11649 putative peptidase; Provisional
Probab=21.13 E-value=75 Score=32.67 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=17.5
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
..|++||+|++||+|+.+-.
T Consensus 365 ~~v~~Gq~V~~Gq~IG~vG~ 384 (439)
T PRK11649 365 LLVKPGQKVKRGDRIALSGN 384 (439)
T ss_pred ccCCCcCEECCCCeEEEEcC
Confidence 55999999999999998853
No 278
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=21.07 E-value=1.5e+02 Score=28.94 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCccCCCCeEEEEc
Q 021186 292 GTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 292 GtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
|.-.++++++|+.|..|+.|+.++
T Consensus 60 ~~~v~~~~~dG~~v~~G~~i~~~~ 83 (284)
T PRK06096 60 GLTIDDAVSDGSQANAGQRLISAQ 83 (284)
T ss_pred CCEEEEEeCCCCEeCCCCEEEEEE
Confidence 345679999999999999999875
No 279
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.91 E-value=69 Score=30.97 Aligned_cols=20 Identities=40% Similarity=0.589 Sum_probs=18.7
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|+++.|+.|++||+|+.++.
T Consensus 62 ~~~~dG~~v~~g~~i~~i~G 81 (273)
T PRK05848 62 FTIKDGERFKKGDILMEIEG 81 (273)
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 78999999999999999984
No 280
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.81 E-value=69 Score=31.51 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=18.7
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|+++.|+.|++|++|+.++.
T Consensus 86 ~~~~dG~~v~~G~~i~~~~G 105 (294)
T PRK06978 86 WRYREGDRMTADSTVCELEG 105 (294)
T ss_pred EEcCCCCEeCCCCEEEEEEe
Confidence 78999999999999999984
No 281
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=20.76 E-value=70 Score=30.40 Aligned_cols=59 Identities=17% Similarity=0.094 Sum_probs=38.8
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecce-eeEEecCCCeEEEEEecCCCCccCCCCeE
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL-MNEIEADRSGTIVEIIAEDRKPVSVDTPL 311 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~-~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL 311 (316)
..|.+-++|.+.. ++++|+.|++||.++.++=++. ..-|..-.... +.-|+.+..|+.+
T Consensus 174 v~Vga~~v~~Iv~--------~~~~~~~v~~G~~~G~~~fGs~gstvip~~~~~~-----v~~~~~v~~g~tv 233 (239)
T COG0688 174 VQVAGLVARRIVC--------YVKEGDTVKKGERIGGIRFGSRGSTVLPLFAEPR-----VAVGERVVAGETV 233 (239)
T ss_pred EEEhhheeeEEEE--------EecCCcEEEhhhhhhhhhhCCcccEEEecCCCce-----eeeccccccCceE
Confidence 4677778888876 6788999999999999997732 22233332232 3456666666554
No 282
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=20.59 E-value=1.9e+02 Score=20.92 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeCC--eEEEEEe
Q 021186 147 SQVSSLIKLVDSRDIVELQLKQLD--CELIIRK 177 (316)
Q Consensus 147 ~qI~eLIklld~S~IsELeLk~~d--~~L~LrK 177 (316)
...+.+.+++++.+..-+.+++.+ ++|.|+|
T Consensus 37 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~i~i~k 69 (69)
T cd00291 37 GAVEDIPAWAKETGHEVLEVEEEGGVYRILIRK 69 (69)
T ss_pred cHHHHHHHHHHHcCCEEEEEEEeCCEEEEEEEC
Confidence 346667778888888877766654 7777654
No 283
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=20.40 E-value=72 Score=30.61 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=18.8
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|++++|+.|++|++|+.|+.
T Consensus 60 ~~~~dG~~v~~g~~i~~i~G 79 (272)
T cd01573 60 LAAASGSRVAAGAVLLEAEG 79 (272)
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 78999999999999999985
No 284
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.07 E-value=73 Score=31.04 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=18.8
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|+++.|+.|++|++|+.++.
T Consensus 74 ~~~~dG~~v~~g~~i~~i~G 93 (281)
T PRK06106 74 RHLPDGAAVAPGDVIATISG 93 (281)
T ss_pred EEeCCCCEEcCCCEEEEEEE
Confidence 88999999999999999984
Done!