Query 021186
Match_columns 316
No_of_seqs 254 out of 2224
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:00:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021186hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bdo_A Acetyl-COA carboxylase; 99.7 1.5E-16 5.2E-21 121.1 10.2 76 240-315 5-80 (80)
2 1z6h_A Biotin/lipoyl attachmen 99.6 6.1E-15 2.1E-19 109.3 9.1 69 241-316 1-69 (72)
3 2kcc_A Acetyl-COA carboxylase 99.6 3.6E-15 1.2E-19 115.7 7.6 69 240-316 6-74 (84)
4 1ghj_A E2, E2, the dihydrolipo 99.5 2.1E-14 7.1E-19 109.2 9.2 66 244-316 12-77 (79)
5 1dcz_A Transcarboxylase 1.3S s 99.5 3.2E-14 1.1E-18 106.9 9.6 71 238-315 7-77 (77)
6 2dn8_A Acetyl-COA carboxylase 99.5 2.5E-14 8.7E-19 114.1 9.3 69 240-316 18-86 (100)
7 2d5d_A Methylmalonyl-COA decar 99.5 4E-14 1.4E-18 105.0 9.2 69 240-315 6-74 (74)
8 3crk_C Dihydrolipoyllysine-res 99.5 2.4E-14 8.4E-19 111.3 8.2 64 245-315 17-81 (87)
9 2l5t_A Lipoamide acyltransfera 99.5 4E-14 1.4E-18 106.9 7.3 66 243-315 11-76 (77)
10 1k8m_A E2 component of branche 99.5 4.2E-14 1.4E-18 112.1 7.4 64 246-316 17-80 (93)
11 2dnc_A Pyruvate dehydrogenase 99.5 5.1E-14 1.7E-18 112.8 7.4 63 246-315 20-83 (98)
12 3n6r_A Propionyl-COA carboxyla 99.5 6.4E-14 2.2E-18 144.7 9.8 71 238-315 611-681 (681)
13 2dne_A Dihydrolipoyllysine-res 99.5 9.4E-14 3.2E-18 113.3 8.1 63 246-315 20-83 (108)
14 2k7v_A Dihydrolipoyllysine-res 99.5 1.2E-14 4.2E-19 112.4 2.1 68 241-315 4-71 (85)
15 2ejm_A Methylcrotonoyl-COA car 99.5 1.6E-13 5.3E-18 109.5 8.6 70 239-315 14-83 (99)
16 2jku_A Propionyl-COA carboxyla 99.5 1.6E-14 5.6E-19 114.3 2.8 71 238-315 24-94 (94)
17 1qjo_A Dihydrolipoamide acetyl 99.5 1.6E-13 5.3E-18 104.2 7.7 63 247-316 14-76 (80)
18 1gjx_A Pyruvate dehydrogenase; 99.4 4.5E-14 1.5E-18 107.6 3.7 69 241-316 9-77 (81)
19 3va7_A KLLA0E08119P; carboxyla 99.4 2.7E-13 9.2E-18 148.4 10.3 72 237-315 1165-1236(1236)
20 1y8o_B Dihydrolipoyllysine-res 99.4 2.9E-13 1E-17 114.2 8.2 63 246-315 40-103 (128)
21 3hbl_A Pyruvate carboxylase; T 99.4 3.6E-13 1.2E-17 146.4 10.0 73 237-316 1075-1147(1150)
22 1iyu_A E2P, dihydrolipoamide a 99.4 4.5E-13 1.5E-17 101.8 6.7 61 249-316 14-74 (79)
23 1pmr_A Dihydrolipoyl succinylt 99.4 2.3E-14 7.8E-19 109.6 -1.0 65 245-316 14-78 (80)
24 3u9t_A MCC alpha, methylcroton 99.4 6.9E-14 2.3E-18 144.4 0.1 70 240-316 603-672 (675)
25 3bg3_A Pyruvate carboxylase, m 99.2 4.3E-12 1.5E-16 132.4 3.4 70 239-315 649-718 (718)
26 2qf7_A Pyruvate carboxylase pr 99.2 1.3E-11 4.3E-16 134.5 5.5 70 239-315 1095-1164(1165)
27 1zko_A Glycine cleavage system 99.2 1.3E-11 4.3E-16 105.3 3.7 69 241-316 38-114 (136)
28 3dva_I Dihydrolipoyllysine-res 99.1 5.7E-12 2E-16 124.3 0.0 62 247-315 16-77 (428)
29 2k32_A A; NMR {Campylobacter j 99.1 6.9E-11 2.4E-15 95.4 5.6 68 241-315 3-100 (116)
30 1zy8_K Pyruvate dehydrogenase 99.1 1E-11 3.4E-16 113.7 0.0 62 247-315 17-79 (229)
31 1hpc_A H protein of the glycin 98.7 3.5E-09 1.2E-13 89.6 3.1 69 241-316 29-105 (131)
32 3a7l_A H-protein, glycine clea 98.7 5.1E-09 1.7E-13 88.2 3.7 70 241-316 30-106 (128)
33 1onl_A Glycine cleavage system 98.7 8.1E-09 2.8E-13 87.0 4.4 69 242-316 30-105 (128)
34 3lnn_A Membrane fusion protein 98.5 2.1E-07 7.3E-12 86.9 7.7 71 238-315 56-203 (359)
35 3ne5_B Cation efflux system pr 98.4 4.7E-07 1.6E-11 87.7 7.7 70 239-315 121-239 (413)
36 2f1m_A Acriflavine resistance 98.4 8.8E-08 3E-12 86.6 2.2 69 240-315 23-164 (277)
37 3fpp_A Macrolide-specific effl 98.4 3.1E-07 1E-11 85.3 5.9 71 238-315 30-188 (341)
38 1vf7_A Multidrug resistance pr 98.2 5E-07 1.7E-11 85.7 3.6 71 238-315 42-171 (369)
39 3klr_A Glycine cleavage system 98.0 6.4E-06 2.2E-10 69.3 5.6 53 263-315 41-100 (125)
40 4dk0_A Putative MACA; alpha-ha 98.0 3.8E-07 1.3E-11 85.3 -2.5 70 238-314 31-188 (369)
41 3na6_A Succinylglutamate desuc 97.9 5.4E-05 1.9E-09 71.9 9.8 68 238-315 256-327 (331)
42 3mxu_A Glycine cleavage system 97.7 4.3E-05 1.5E-09 65.7 5.8 41 263-303 63-103 (143)
43 3tzu_A GCVH, glycine cleavage 97.7 3.4E-05 1.2E-09 65.9 5.1 37 263-299 58-94 (137)
44 3cdx_A Succinylglutamatedesucc 97.7 0.00013 4.4E-09 69.6 9.1 67 239-315 267-337 (354)
45 3fmc_A Putative succinylglutam 97.6 0.00012 4.2E-09 70.6 8.1 67 238-314 289-361 (368)
46 1ax3_A Iiaglc, glucose permeas 97.5 0.00014 4.7E-09 63.5 5.9 65 240-315 13-116 (162)
47 2dn8_A Acetyl-COA carboxylase 97.4 5.3E-05 1.8E-09 59.9 2.1 45 271-315 5-49 (100)
48 1f3z_A EIIA-GLC, glucose-speci 97.4 0.00021 7.1E-09 62.4 5.9 65 240-315 13-116 (161)
49 2gpr_A Glucose-permease IIA co 97.4 0.00022 7.6E-09 61.7 5.9 65 240-315 8-111 (154)
50 3hgb_A Glycine cleavage system 97.3 0.00024 8.3E-09 61.8 5.8 37 263-299 68-104 (155)
51 2qj8_A MLR6093 protein; struct 96.8 0.0032 1.1E-07 59.3 8.6 65 240-314 258-326 (332)
52 1z6h_A Biotin/lipoyl attachmen 96.8 0.0012 4E-08 48.1 4.1 31 285-315 1-31 (72)
53 2d5d_A Methylmalonyl-COA decar 96.7 0.0017 5.8E-08 47.2 4.4 32 284-315 6-37 (74)
54 1dcz_A Transcarboxylase 1.3S s 96.5 0.0022 7.4E-08 47.3 4.1 33 283-315 8-40 (77)
55 2kcc_A Acetyl-COA carboxylase 96.4 0.0018 6.2E-08 49.5 2.8 32 284-315 6-37 (84)
56 2xha_A NUSG, transcription ant 95.8 0.0074 2.5E-07 54.2 4.6 51 256-312 19-98 (193)
57 3fpp_A Macrolide-specific effl 95.8 0.0099 3.4E-07 54.8 5.3 54 262-316 11-64 (341)
58 2jku_A Propionyl-COA carboxyla 95.8 0.0056 1.9E-07 47.8 3.1 33 283-315 25-57 (94)
59 2ejm_A Methylcrotonoyl-COA car 95.7 0.006 2.1E-07 47.9 3.2 33 283-315 14-46 (99)
60 3lnn_A Membrane fusion protein 95.6 0.0072 2.5E-07 56.2 3.9 55 262-316 35-90 (359)
61 3our_B EIIA, phosphotransferas 95.6 0.016 5.4E-07 51.7 5.6 65 240-315 35-138 (183)
62 2l5t_A Lipoamide acyltransfera 95.6 0.012 4E-07 43.6 4.1 33 240-279 45-77 (77)
63 1bdo_A Acetyl-COA carboxylase; 95.4 0.0081 2.8E-07 44.8 2.8 32 284-315 5-43 (80)
64 1qjo_A Dihydrolipoamide acetyl 95.3 0.012 4.2E-07 43.7 3.3 34 239-279 43-76 (80)
65 1vf7_A Multidrug resistance pr 95.0 0.015 5.2E-07 54.8 3.9 44 272-316 33-76 (369)
66 2xhc_A Transcription antitermi 94.9 0.023 7.8E-07 55.0 5.0 51 256-312 59-138 (352)
67 1iyu_A E2P, dihydrolipoamide a 94.8 0.024 8.3E-07 42.1 3.7 34 240-280 42-75 (79)
68 4dk0_A Putative MACA; alpha-ha 94.6 0.015 5.2E-07 54.0 2.7 55 261-316 11-65 (369)
69 2gpr_A Glucose-permease IIA co 94.6 0.032 1.1E-06 48.2 4.4 73 240-315 45-154 (154)
70 3crk_C Dihydrolipoyllysine-res 94.5 0.045 1.5E-06 41.7 4.7 27 289-315 17-43 (87)
71 1ghj_A E2, E2, the dihydrolipo 94.4 0.026 8.9E-07 42.0 3.2 33 240-279 45-77 (79)
72 1gjx_A Pyruvate dehydrogenase; 94.4 0.031 1.1E-06 41.6 3.6 30 286-315 10-39 (81)
73 1k8m_A E2 component of branche 94.2 0.045 1.5E-06 42.6 4.3 27 289-315 16-42 (93)
74 2dne_A Dihydrolipoyllysine-res 94.2 0.035 1.2E-06 44.6 3.7 34 282-315 6-45 (108)
75 3ne5_B Cation efflux system pr 94.1 0.044 1.5E-06 52.8 4.9 54 262-315 99-154 (413)
76 3d4r_A Domain of unknown funct 94.0 0.057 2E-06 47.5 4.9 52 242-300 103-155 (169)
77 2k7v_A Dihydrolipoyllysine-res 93.8 0.022 7.6E-07 43.2 1.7 35 239-280 39-73 (85)
78 1pmr_A Dihydrolipoyl succinylt 93.6 0.025 8.7E-07 42.3 1.7 34 239-279 45-78 (80)
79 2auk_A DNA-directed RNA polyme 93.5 0.081 2.8E-06 46.8 5.1 48 255-304 59-106 (190)
80 1y8o_B Dihydrolipoyllysine-res 92.9 0.098 3.3E-06 43.7 4.4 34 282-315 26-65 (128)
81 1ax3_A Iiaglc, glucose permeas 92.7 0.073 2.5E-06 46.3 3.5 40 240-279 50-117 (162)
82 2dnc_A Pyruvate dehydrogenase 92.6 0.099 3.4E-06 41.1 3.8 35 239-280 50-85 (98)
83 2xha_A NUSG, transcription ant 92.5 0.039 1.3E-06 49.5 1.6 53 255-313 76-158 (193)
84 3n6r_A Propionyl-COA carboxyla 91.8 0.12 4.2E-06 53.3 4.5 33 283-315 612-644 (681)
85 1f3z_A EIIA-GLC, glucose-speci 91.5 0.19 6.5E-06 43.6 4.7 40 240-279 50-117 (161)
86 2k32_A A; NMR {Campylobacter j 91.4 0.13 4.5E-06 40.6 3.3 36 239-281 67-103 (116)
87 2bco_A Succinylglutamate desuc 90.0 0.26 8.8E-06 46.9 4.5 62 241-314 265-326 (350)
88 3lu0_D DNA-directed RNA polyme 88.9 0.28 9.7E-06 54.7 4.4 37 257-295 1000-1036(1407)
89 3bg3_A Pyruvate carboxylase, m 88.9 0.26 8.7E-06 51.7 3.8 32 284-315 650-681 (718)
90 3hbl_A Pyruvate carboxylase; T 87.9 0.36 1.2E-05 53.0 4.4 33 283-315 1077-1109(1150)
91 3va7_A KLLA0E08119P; carboxyla 87.3 0.42 1.4E-05 52.9 4.5 32 284-315 1168-1199(1236)
92 3u9t_A MCC alpha, methylcroton 86.9 0.12 4.2E-06 53.3 0.0 32 284-315 603-634 (675)
93 2xhc_A Transcription antitermi 86.0 0.13 4.6E-06 49.6 -0.3 51 256-312 117-197 (352)
94 2qf7_A Pyruvate carboxylase pr 85.3 0.59 2E-05 51.3 4.3 32 284-315 1096-1127(1165)
95 2f1m_A Acriflavine resistance 83.1 1 3.5E-05 40.1 4.2 33 240-279 131-165 (277)
96 3dva_I Dihydrolipoyllysine-res 78.7 0.41 1.4E-05 47.0 0.0 34 240-280 46-79 (428)
97 1zy8_K Pyruvate dehydrogenase 75.2 0.59 2E-05 42.4 0.0 33 240-279 47-80 (229)
98 3our_B EIIA, phosphotransferas 74.2 1.5 5.1E-05 38.9 2.4 20 260-279 120-139 (183)
99 3lu0_D DNA-directed RNA polyme 70.9 1.7 5.8E-05 48.7 2.3 22 256-277 1103-1124(1407)
100 3fmc_A Putative succinylglutam 68.5 4.2 0.00014 38.9 4.3 33 282-315 289-321 (368)
101 1uou_A Thymidine phosphorylase 62.3 8.2 0.00028 38.6 5.1 39 277-315 366-433 (474)
102 3na6_A Succinylglutamate desuc 60.6 6.5 0.00022 36.9 3.9 33 282-315 256-288 (331)
103 3cdx_A Succinylglutamatedesucc 59.4 8.6 0.00029 36.2 4.5 34 281-315 265-298 (354)
104 3it5_A Protease LASA; metallop 58.2 6.4 0.00022 34.2 3.2 21 259-279 84-104 (182)
105 1brw_A PYNP, protein (pyrimidi 57.1 11 0.00039 37.1 5.0 38 278-315 330-398 (433)
106 3h5q_A PYNP, pyrimidine-nucleo 55.8 12 0.00042 37.0 5.0 36 280-315 335-401 (436)
107 2dsj_A Pyrimidine-nucleoside ( 51.8 14 0.00046 36.5 4.6 36 279-315 324-390 (423)
108 1yw4_A Succinylglutamate desuc 51.4 2.5 8.6E-05 39.9 -0.7 36 260-295 277-317 (341)
109 3it5_A Protease LASA; metallop 48.3 28 0.00096 30.1 5.6 54 240-314 49-102 (182)
110 2tpt_A Thymidine phosphorylase 47.3 10 0.00035 37.5 2.9 39 277-315 334-403 (440)
111 3csq_A Morphogenesis protein 1 46.7 9.3 0.00032 36.0 2.5 21 259-279 250-270 (334)
112 3tuf_B Stage II sporulation pr 45.6 8.9 0.00031 35.1 2.1 21 260-280 135-155 (245)
113 3vr4_A V-type sodium ATPase ca 45.1 32 0.0011 35.5 6.2 42 261-304 130-174 (600)
114 1zko_A Glycine cleavage system 43.1 13 0.00044 31.1 2.5 31 285-315 38-69 (136)
115 2hsi_A Putative peptidase M23; 41.4 11 0.00038 35.0 2.0 20 260-279 232-251 (282)
116 3nyy_A Putative glycyl-glycine 40.9 12 0.00042 34.1 2.3 19 261-279 183-201 (252)
117 1brw_A PYNP, protein (pyrimidi 40.8 24 0.00081 34.8 4.4 42 240-281 336-401 (433)
118 2dsj_A Pyrimidine-nucleoside ( 40.5 24 0.00083 34.7 4.4 22 260-281 372-393 (423)
119 1hpc_A H protein of the glycin 40.4 14 0.00047 30.7 2.2 32 284-315 28-60 (131)
120 2hsi_A Putative peptidase M23; 39.7 24 0.00082 32.7 4.0 21 294-314 229-249 (282)
121 3tuf_B Stage II sporulation pr 39.0 28 0.00095 31.7 4.3 58 241-314 95-152 (245)
122 1qwy_A Peptidoglycan hydrolase 38.9 13 0.00044 35.1 2.0 20 260-279 239-258 (291)
123 2auk_A DNA-directed RNA polyme 38.3 16 0.00056 31.9 2.5 24 255-278 163-186 (190)
124 1uou_A Thymidine phosphorylase 37.8 28 0.00097 34.8 4.4 24 258-281 413-436 (474)
125 2qj8_A MLR6093 protein; struct 37.6 26 0.00089 32.4 3.9 32 283-315 257-288 (332)
126 2ktr_A Sequestosome-1; autopha 36.4 16 0.00056 30.1 2.1 45 63-107 18-83 (117)
127 3h5q_A PYNP, pyrimidine-nucleo 36.4 25 0.00086 34.7 3.8 39 240-278 339-401 (436)
128 1onl_A Glycine cleavage system 35.5 20 0.00069 29.5 2.5 32 284-315 28-60 (128)
129 2gu1_A Zinc peptidase; alpha/b 35.5 29 0.001 32.7 4.0 20 295-314 282-301 (361)
130 2tpt_A Thymidine phosphorylase 35.5 13 0.00044 36.8 1.5 42 240-281 341-406 (440)
131 3a7l_A H-protein, glycine clea 34.8 21 0.00072 29.4 2.5 31 285-315 30-61 (128)
132 2gu1_A Zinc peptidase; alpha/b 34.7 16 0.00055 34.5 2.0 20 260-279 284-303 (361)
133 2kkc_A Sequestosome-1; P62, PB 34.0 18 0.0006 29.1 1.8 43 65-107 5-68 (102)
134 3d4r_A Domain of unknown funct 33.9 32 0.0011 30.1 3.6 41 264-315 92-132 (169)
135 2lmc_B DNA-directed RNA polyme 33.8 14 0.00047 28.8 1.1 21 255-275 62-82 (84)
136 1x1o_A Nicotinate-nucleotide p 32.9 22 0.00075 33.1 2.6 20 260-279 76-95 (286)
137 1o4u_A Type II quinolic acid p 32.3 21 0.00071 33.3 2.3 20 260-279 75-94 (285)
138 1qpo_A Quinolinate acid phosph 31.0 22 0.00076 33.0 2.2 20 260-279 75-94 (284)
139 3tqv_A Nicotinate-nucleotide p 30.3 26 0.00088 32.9 2.6 20 260-279 79-98 (287)
140 3l0g_A Nicotinate-nucleotide p 28.7 28 0.00095 32.9 2.5 20 260-279 88-107 (300)
141 3nyy_A Putative glycyl-glycine 27.4 51 0.0018 29.9 4.0 59 240-314 140-199 (252)
142 3gnn_A Nicotinate-nucleotide p 26.2 35 0.0012 32.1 2.7 20 260-279 90-109 (298)
143 3paj_A Nicotinate-nucleotide p 25.4 37 0.0013 32.3 2.7 20 260-279 112-131 (320)
144 2b7n_A Probable nicotinate-nuc 25.4 34 0.0012 31.3 2.4 20 260-279 62-81 (273)
145 1qap_A Quinolinic acid phospho 25.1 38 0.0013 31.6 2.7 20 260-279 89-108 (296)
146 1hcz_A Cytochrome F; electron 24.5 82 0.0028 29.1 4.7 59 237-312 166-228 (252)
147 2qzb_A Uncharacterized protein 24.3 47 0.0016 29.0 3.0 42 262-304 45-89 (166)
148 2jbm_A Nicotinate-nucleotide p 22.5 40 0.0014 31.3 2.3 20 260-279 75-94 (299)
149 3csq_A Morphogenesis protein 1 21.7 78 0.0027 29.6 4.2 19 296-314 250-268 (334)
150 3gqb_A V-type ATP synthase alp 21.7 1.3E+02 0.0044 31.0 6.0 37 261-297 122-160 (578)
No 1
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.68 E-value=1.5e-16 Score=121.12 Aligned_cols=76 Identities=53% Similarity=0.976 Sum_probs=73.3
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|++|+.|++++.+.+..+|++++||.|++||+|+.||+||+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 3699999999999889999999999999999999999999999999999999999999999999999999999985
No 2
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.58 E-value=6.1e-15 Score=109.30 Aligned_cols=69 Identities=33% Similarity=0.529 Sum_probs=66.1
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
.|.||+.|++.+ |++++||.|++||+|+.||++|+..+|+||++|+|.++++++|+.|..|++|+.|.+
T Consensus 1 ~v~a~~~G~v~~-------~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 1 TVSIQMAGNLWK-------VHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp CEECCSSEEEEE-------ECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred CEECcccEEEEE-------EEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence 378999999999 999999999999999999999999999999999999999999999999999999863
No 3
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.57 E-value=3.6e-15 Score=115.73 Aligned_cols=69 Identities=20% Similarity=0.294 Sum_probs=66.3
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
..|+||+.|++++ |+|++||.|++||+|+.||+||+..+|+||++|+|.+++ ++|+.|..|++|+.|.+
T Consensus 6 ~~v~a~~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~ 74 (84)
T 2kcc_A 6 TVLRSPSAGKLTQ-------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLEL 74 (84)
T ss_dssp TEECCSSSCCEEE-------ESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEEC
T ss_pred ceEECCCCEEEEE-------EECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeC
Confidence 4699999999999 999999999999999999999999999999999999999 99999999999999863
No 4
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.54 E-value=2.1e-14 Score=109.18 Aligned_cols=66 Identities=24% Similarity=0.288 Sum_probs=63.0
Q ss_pred CCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 244 CPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 244 APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
+++.|++.+ |+|++||.|++||+|+.||+||+..+|+||++|+|.++++++|+.|..|++|++|.+
T Consensus 12 ~~~~G~i~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 12 SIADGTVAT-------WHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp SCSCEEECC-------CSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred CCCCEEEEE-------EEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 457899998 999999999999999999999999999999999999999999999999999999864
No 5
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.53 E-value=3.2e-14 Score=106.88 Aligned_cols=71 Identities=32% Similarity=0.523 Sum_probs=67.7
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+...|.+|+.|++.+ |++++||.|++||+|+.|+.+|+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus 7 ~~~~v~a~~~G~v~~-------~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 7 GEGEIPAPLAGTVSK-------ILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp CSSEEEBSSSCEEEE-------ECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCeEEECCCCEEEEE-------EEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 345799999999998 99999999999999999999999999999999999999999999999999999985
No 6
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.5e-14 Score=114.08 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=66.4
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
..|.+|+.|++.+ |+|++||.|++||+|+.||+||+..+|+||++|+|. +++++|+.|..|++|+.|.+
T Consensus 18 ~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~ 86 (100)
T 2dn8_A 18 TVLRSPSAGKLTQ-------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL 86 (100)
T ss_dssp TEEECSSCEEEEE-------ESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred cEEeCCCCEEEEE-------EEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence 4799999999999 999999999999999999999999999999999999 99999999999999999863
No 7
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.52 E-value=4e-14 Score=104.96 Aligned_cols=69 Identities=38% Similarity=0.647 Sum_probs=66.5
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|.||+.|++.+ |++++||.|++||+|+.|+++++..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus 6 ~~v~a~~~G~v~~-------~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 6 NVVSAPMPGKVLR-------VLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp CEEECSSCEEEEE-------ECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred eEEecCCCEEEEE-------EEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 4689999999999 99999999999999999999999999999999999999999999999999999985
No 8
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.52 E-value=2.4e-14 Score=111.35 Aligned_cols=64 Identities=28% Similarity=0.400 Sum_probs=61.6
Q ss_pred CcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEEc
Q 021186 245 PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVIE 315 (316)
Q Consensus 245 PmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd-~V~~GqpL~~Ie 315 (316)
...|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|++|+
T Consensus 17 ~~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~ 81 (87)
T 3crk_C 17 MTMGTVQR-------WEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 81 (87)
T ss_dssp CCEEEEEE-------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEE
T ss_pred CCcEEEEE-------EEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEE
Confidence 46899999 99999999999999999999999999999999999999999999 899999999986
No 9
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.49 E-value=4e-14 Score=106.94 Aligned_cols=66 Identities=30% Similarity=0.344 Sum_probs=63.2
Q ss_pred cCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 243 KCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 243 ~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.+++.|++.+ |+|++||.|++||+|+.||++|+..+|+||++|+|.++++++|+.|..|++|++|+
T Consensus 11 ~~~~~G~v~~-------~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 11 EGVTEGEIVR-------WDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp SSCCCEEEEE-------CSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred CCCccEEEEE-------EEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 3568899999 99999999999999999999999999999999999999999999999999999986
No 10
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.49 E-value=4.2e-14 Score=112.05 Aligned_cols=64 Identities=25% Similarity=0.265 Sum_probs=61.7
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 246 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 246 mvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
..|++.+ |+|++||.|++||+||.||+||+..+|+||++|+|.++++++|+.|..|++|++|++
T Consensus 17 ~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~ 80 (93)
T 1k8m_A 17 REVTVKE-------WYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET 80 (93)
T ss_dssp CCEEEEE-------ECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred CCEEEEE-------EEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence 6899999 999999999999999999999999999999999999999999999999999999863
No 11
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5.1e-14 Score=112.82 Aligned_cols=63 Identities=24% Similarity=0.393 Sum_probs=60.9
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCcc-CCCCeEEEEc
Q 021186 246 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPV-SVDTPLFVIE 315 (316)
Q Consensus 246 mvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V-~~GqpL~~Ie 315 (316)
..|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.| ..|++|++|.
T Consensus 20 ~~G~i~~-------~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~ 83 (98)
T 2dnc_A 20 EEGNIVK-------WLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 83 (98)
T ss_dssp SEECEEE-------ESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEE
T ss_pred ccEEEEE-------EEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEe
Confidence 5789999 9999999999999999999999999999999999999999999999 9999999986
No 12
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.48 E-value=6.4e-14 Score=144.71 Aligned_cols=71 Identities=38% Similarity=0.623 Sum_probs=68.2
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+...|+|||.|++++ |+|++||+|++||+|++||+|||.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 611 ~~~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 611 TSKMLLCPMPGLIVK-------VDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CCSEEECCSCEEEEE-------ECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCCeEECCCcEEEEE-------EEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 345799999999999 99999999999999999999999999999999999999999999999999999985
No 13
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.47 E-value=9.4e-14 Score=113.30 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=60.9
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEEc
Q 021186 246 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVIE 315 (316)
Q Consensus 246 mvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd-~V~~GqpL~~Ie 315 (316)
..|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|++|.
T Consensus 20 ~~G~v~~-------~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~ 83 (108)
T 2dne_A 20 QAGTIAR-------WEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITV 83 (108)
T ss_dssp CEEEEEE-------CSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEE
T ss_pred ccEEEEE-------EEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEe
Confidence 5789999 99999999999999999999999999999999999999999999 999999999985
No 14
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.46 E-value=1.2e-14 Score=112.43 Aligned_cols=68 Identities=25% Similarity=0.313 Sum_probs=65.2
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.|+.|..|++.+ |+|++||+|++||+|+.||++|+..+|+||++|+|.+++++.|+.|..|++|+.|.
T Consensus 4 ~i~~p~~G~v~~-------~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~ 71 (85)
T 2k7v_A 4 EVNVPDIVEVTE-------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFE 71 (85)
T ss_dssp CCCCCSCCCCCS-------CCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEE
T ss_pred EEECCCeEEEEE-------EEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 577888899998 99999999999999999999999999999999999999999999999999999986
No 15
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=109.47 Aligned_cols=70 Identities=31% Similarity=0.519 Sum_probs=67.4
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|.+|+.|++.+ |+|++||.|++||+|+.|+.+|+..+|+||++|+|.+++++.|+.|..|++|++|.
T Consensus 14 ~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~ 83 (99)
T 2ejm_A 14 QGGPLAPMTGTIEK-------VFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFE 83 (99)
T ss_dssp CSSCBCSSSEEEEE-------ECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEEC
T ss_pred ceEEecCCCEEEEE-------EECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEE
Confidence 35799999999999 99999999999999999999999999999999999999999999999999999986
No 16
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.46 E-value=1.6e-14 Score=114.30 Aligned_cols=71 Identities=34% Similarity=0.545 Sum_probs=32.6
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+...|.+|+.|++.+ |++++||.|++||+|+.||++|+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus 24 ~~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 24 TSSVLRSPMPGVVVA-------VSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp CCCCCCCSSSCEEEE-------ECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred CceEEECCCCEEEEE-------EECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 345799999999999 99999999999999999999999999999999999999999999999999999875
No 17
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.45 E-value=1.6e-13 Score=104.18 Aligned_cols=63 Identities=25% Similarity=0.297 Sum_probs=61.0
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 247 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 247 vGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
.|++.+ |+|++||.|++||+||.||++|+..+|+||++|+|.++++++|+.|..|++|+.|.+
T Consensus 14 ~G~v~~-------~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 14 EVEVTE-------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp CEEEEE-------CCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred CEEEEE-------EEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEc
Confidence 899999 999999999999999999999999999999999999999999999999999999863
No 18
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.43 E-value=4.5e-14 Score=107.63 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=65.1
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
.+.+++.|++.+ |++++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus 9 ~~g~~~~G~i~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (81)
T 1gjx_A 9 DIGGHENVDIIA-------VEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp CCSSCSSEEEEE-------ECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred CCCCCCcEEEEE-------EEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence 355689999999 999999999999999999999999999999999999999999999999999999864
No 19
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.42 E-value=2.7e-13 Score=148.36 Aligned_cols=72 Identities=31% Similarity=0.455 Sum_probs=68.6
Q ss_pred CCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 237 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 237 ~~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.+...|+|||.|+|++ |+|++||.|++||+||+||+|||+++|+||++|+|.+|++++||.|.+|++|+.|.
T Consensus 1165 ~~~~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i~ 1236 (1236)
T 3va7_A 1165 DDAELLYSEYTGRFWK-------PVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVIV 1236 (1236)
T ss_dssp TTCEEEECSSCEEEEE-------ESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCCcEEeCCCcEEEEE-------EEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEeC
Confidence 3456899999999999 99999999999999999999999999999999999999999999999999999873
No 20
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.42 E-value=2.9e-13 Score=114.16 Aligned_cols=63 Identities=30% Similarity=0.440 Sum_probs=60.6
Q ss_pred cCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEEc
Q 021186 246 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVIE 315 (316)
Q Consensus 246 mvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd-~V~~GqpL~~Ie 315 (316)
..|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|++|+
T Consensus 40 ~~G~V~~-------~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~ 103 (128)
T 1y8o_B 40 TMGTVQR-------WEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 103 (128)
T ss_dssp SEEEEEE-------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred ccEEEEE-------EecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEe
Confidence 4689999 99999999999999999999999999999999999999999998 899999999986
No 21
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.41 E-value=3.6e-13 Score=146.41 Aligned_cols=73 Identities=29% Similarity=0.382 Sum_probs=69.2
Q ss_pred CCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 237 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 237 ~~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
.+...|.|||.|++++ |+|++||.|++||+||+||+|||.++|+||++|+|.++++++|+.|..|++|+.|++
T Consensus 1075 ~~~~~v~ap~~G~v~~-------~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A 1075 SNPSHIGAQMPGSVTE-------VKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp TCSSEEECSSSEEEEE-------ECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred CCCceeecCceEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence 4456899999999999 999999999999999999999999999999999999999999999999999999974
No 22
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.39 E-value=4.5e-13 Score=101.76 Aligned_cols=61 Identities=20% Similarity=0.338 Sum_probs=58.4
Q ss_pred EEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 249 TFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 249 tf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
++.+ |+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|+.|.+
T Consensus 14 ~i~~-------~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~ 74 (79)
T 1iyu_A 14 EVIE-------LLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp EEEE-------ECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred EEEE-------EecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 6777 999999999999999999999999999999999999999999999999999999864
No 23
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.38 E-value=2.3e-14 Score=109.57 Aligned_cols=65 Identities=23% Similarity=0.253 Sum_probs=61.7
Q ss_pred CcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 245 PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 245 PmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
...|++.+ |+|++||.|++||+||.||+||+..+|+||++|+|.++++++|+.|..|++|++|++
T Consensus 14 ~~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 14 VADATVAT-------WHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CSCEECCB-------CCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CccEEEEE-------EECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 36788888 999999999999999999999999999999999999999999999999999999864
No 24
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.35 E-value=6.9e-14 Score=144.37 Aligned_cols=70 Identities=30% Similarity=0.529 Sum_probs=0.0
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
..|+|||.|++++ |+|++||.|++||+||+||+|||.++|+||++|+|.++++++|+.|..|++|+.|++
T Consensus 603 ~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~ 672 (675)
T 3u9t_A 603 GGLSAPMNGSIVR-------VLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDE 672 (675)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CeEECCCCEEEEE-------EEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEec
Confidence 5799999999999 999999999999999999999999999999999999999999999999999999874
No 25
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=99.20 E-value=4.3e-12 Score=132.44 Aligned_cols=70 Identities=27% Similarity=0.433 Sum_probs=67.3
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|.|||.|++++ |+|++||.|++||+|++||+|||.++|+||++|+|.++++++|+.|..|++|++|+
T Consensus 649 ~~~v~ap~~G~V~~-------v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 649 KGQIGAPMPGKVID-------IKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp SSCEECSSCEEEEE-------ECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CceEeCCCCeEEEE-------EEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 35799999999999 99999999999999999999999999999999999999999999999999999874
No 26
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.17 E-value=1.3e-11 Score=134.50 Aligned_cols=70 Identities=34% Similarity=0.540 Sum_probs=61.0
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|.|||.|++++ |+|++||.|++||+|++||+|||.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 1095 ~~~v~ap~~G~v~~-------~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1095 AAHVGAPMPGVISR-------VFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp TTEEECSSCEEEEE-------ECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CceeeCCCCeEEEE-------EEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 35799999999999 99999999999999999999999999999999999999999999999999999986
No 27
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=99.16 E-value=1.3e-11 Score=105.33 Aligned_cols=69 Identities=28% Similarity=0.334 Sum_probs=60.5
Q ss_pred CccCCcCeEEEcCCCCCCCCC-ccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEE---ecCCCCccC---CCC-eEE
Q 021186 241 PLKCPMAGTFYRSPAPGEPPF-VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEI---IAEDRKPVS---VDT-PLF 312 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~-VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eI---lVe~Gd~V~---~Gq-pL~ 312 (316)
.+.+|+.|.+.. .. .++||.|++||+||+||+||+.++|.||++|+|+++ ++++|+.|. ||+ .|+
T Consensus 38 ~~a~~~lG~i~~-------V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~ 110 (136)
T 1zko_A 38 NHAQEQLGDVVY-------VDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLF 110 (136)
T ss_dssp HHHHHHHCSEEE-------EECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCE
T ss_pred hhhcccCCCcEE-------EEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEE
Confidence 356677786554 22 399999999999999999999999999999999999 899999999 998 999
Q ss_pred EEcC
Q 021186 313 VIEP 316 (316)
Q Consensus 313 ~IeP 316 (316)
+|+|
T Consensus 111 ~i~~ 114 (136)
T 1zko_A 111 KMEI 114 (136)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9874
No 28
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=99.12 E-value=5.7e-12 Score=124.30 Aligned_cols=62 Identities=29% Similarity=0.516 Sum_probs=0.0
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 247 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 247 vGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|+.|+
T Consensus 16 eg~i~~-------w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~ 77 (428)
T 3dva_I 16 EGEIVK-------WFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLD 77 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cEEEEE-------EEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEe
Confidence 477777 99999999999999999999999999999999999999999999999999999985
No 29
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=99.10 E-value=6.9e-11 Score=95.36 Aligned_cols=68 Identities=34% Similarity=0.423 Sum_probs=62.9
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEeccee-----------------------------eEEecCCC
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLM-----------------------------NEIEADRS 291 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~-----------------------------~eI~Ap~s 291 (316)
.|.+++.|++.+ ++|++||.|++||+|+.|+..+.. ..|+||++
T Consensus 3 ~v~a~~~G~V~~-------v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~ 75 (116)
T 2k32_A 3 IIKPQVSGVIVN-------KLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFD 75 (116)
T ss_dssp EECCSSCEEEEE-------ECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSS
T ss_pred EEeCcCCEEEEE-------EECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCC
Confidence 588999999999 899999999999999999987544 48999999
Q ss_pred eEEEEEecCCCCccCCC-CeEEEEc
Q 021186 292 GTIVEIIAEDRKPVSVD-TPLFVIE 315 (316)
Q Consensus 292 GtV~eIlVe~Gd~V~~G-qpL~~Ie 315 (316)
|+|.++.++.|+.|..| ++|+.|.
T Consensus 76 G~V~~~~~~~G~~v~~g~~~l~~i~ 100 (116)
T 2k32_A 76 GTIGDALVNIGDYVSASTTELVRVT 100 (116)
T ss_dssp EEECCCSCCTTCEECTTTSCCEEEE
T ss_pred EEEEEEECCCCCEEcCCCcEEEEEE
Confidence 99999999999999999 9999985
No 30
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.09 E-value=1e-11 Score=113.71 Aligned_cols=62 Identities=24% Similarity=0.438 Sum_probs=0.0
Q ss_pred CeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCc-cCCCCeEEEEc
Q 021186 247 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP-VSVDTPLFVIE 315 (316)
Q Consensus 247 vGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~-V~~GqpL~~Ie 315 (316)
.|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+. |..|++|++|+
T Consensus 17 eG~I~~-------w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~ 79 (229)
T 1zy8_K 17 EGNIVK-------WLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 79 (229)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cEEEEE-------EecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEe
Confidence 567777 999999999999999999999999999999999999999999997 99999999885
No 31
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.74 E-value=3.5e-09 Score=89.63 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=56.5
Q ss_pred CccCCcCeEEEcCCCCCCCCCc-cCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEec---CCCCccC---CCC-eEE
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFV-KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA---EDRKPVS---VDT-PLF 312 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~V-kvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlV---e~Gd~V~---~Gq-pL~ 312 (316)
.+..++.|.+.. ..+ ++|+.|++||+||+||+||+.++|.||++|+|++++. ++.+.|. ||+ -|+
T Consensus 29 d~a~~~lG~i~~-------v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~ 101 (131)
T 1hpc_A 29 DHAQDHLGEVVF-------VELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMI 101 (131)
T ss_dssp HHHHHHHCSEEE-------EECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCE
T ss_pred hhhcccCCCceE-------EEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEE
Confidence 355677787655 333 9999999999999999999999999999999999974 4555774 777 888
Q ss_pred EEcC
Q 021186 313 VIEP 316 (316)
Q Consensus 313 ~IeP 316 (316)
+|++
T Consensus 102 ~i~~ 105 (131)
T 1hpc_A 102 KIKP 105 (131)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8863
No 32
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.73 E-value=5.1e-09 Score=88.23 Aligned_cols=70 Identities=23% Similarity=0.278 Sum_probs=57.2
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEec---CCCCccC---CCC-eEEE
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA---EDRKPVS---VDT-PLFV 313 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlV---e~Gd~V~---~Gq-pL~~ 313 (316)
.+..++.|.+..- -+.++|++|++||.||+||+||+..+|.||++|+|++++. ++.+.|. ||+ -|++
T Consensus 30 d~a~~~lG~i~~v------~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~ 103 (128)
T 3a7l_A 30 EHAQELLGDMVFV------DLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFK 103 (128)
T ss_dssp HHHHHHHCSEEEE------ECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEE
T ss_pred hHHhccCCceEEE------EecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEE
Confidence 3556777865541 1238999999999999999999999999999999999975 6667787 887 8988
Q ss_pred EcC
Q 021186 314 IEP 316 (316)
Q Consensus 314 IeP 316 (316)
|++
T Consensus 104 i~~ 106 (128)
T 3a7l_A 104 IKA 106 (128)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 33
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.71 E-value=8.1e-09 Score=86.99 Aligned_cols=69 Identities=25% Similarity=0.375 Sum_probs=55.9
Q ss_pred ccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEec---CCCCcc---CCCC-eEEEE
Q 021186 242 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA---EDRKPV---SVDT-PLFVI 314 (316)
Q Consensus 242 V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlV---e~Gd~V---~~Gq-pL~~I 314 (316)
...++.|.+..- -+.++|++|++||+||+||+||+.++|.||++|+|++++. ++.+.| .||+ -|++|
T Consensus 30 ~a~~~lG~i~~v------~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i 103 (128)
T 1onl_A 30 YAQDALGDVVYV------ELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRL 103 (128)
T ss_dssp HHHHHHCSEEEE------ECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEE
T ss_pred HHhhcCCCceEE------EecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEE
Confidence 445666765440 1239999999999999999999999999999999999975 566777 7887 89988
Q ss_pred cC
Q 021186 315 EP 316 (316)
Q Consensus 315 eP 316 (316)
++
T Consensus 104 ~~ 105 (128)
T 1onl_A 104 KP 105 (128)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 34
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=98.49 E-value=2.1e-07 Score=86.90 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=63.8
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecce-----------------------------------
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL----------------------------------- 282 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~----------------------------------- 282 (316)
....|.++..|++.. ++|++||.|++||+|+.|+...+
T Consensus 56 ~~~~v~~~~~G~V~~-------v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~ 128 (359)
T 3lnn_A 56 KLVKVLPPLAGRIVS-------LNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAK 128 (359)
T ss_dssp SEEEECCSSCEEEEE-------CCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCC
T ss_pred cEEEEeccCCEEEEE-------EEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 446899999999999 89999999999999999997542
Q ss_pred -----------------------------------------eeEEecCCCeEEEEEecCCCCccCC-CCeEEEEc
Q 021186 283 -----------------------------------------MNEIEADRSGTIVEIIAEDRKPVSV-DTPLFVIE 315 (316)
Q Consensus 283 -----------------------------------------~~eI~Ap~sGtV~eIlVe~Gd~V~~-GqpL~~Ie 315 (316)
...|+||++|+|.++.++.|+.|.. |++|+.|.
T Consensus 129 ~~~~~a~~~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~ 203 (359)
T 3lnn_A 129 RDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVA 203 (359)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEe
Confidence 3579999999999999999999999 99999874
No 35
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=98.39 E-value=4.7e-07 Score=87.70 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=62.4
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCc-cCCCEEecCCeEEEEEec-------------------------------------
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFV-KVGDRVQKGQVLCIIEAM------------------------------------- 280 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~V-kvGD~VkkGqvL~iIEam------------------------------------- 280 (316)
...|.++..|++.+ ++| ++||.|++||+|+.|+..
T Consensus 121 ~~~v~a~~~G~V~~-------v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~ 193 (413)
T 3ne5_B 121 YAIVQARAAGFIDK-------VYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEA 193 (413)
T ss_dssp EEEECCSSCEEEEE-------ECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHH
T ss_pred eEEEecccCEEEEE-------EEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHH
Confidence 35799999999998 898 999999999999999942
Q ss_pred -----------ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 281 -----------KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 281 -----------K~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.....|+||++|+|.++.++.|+.|..|++|+.|.
T Consensus 194 ~~~~l~~~~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~ 239 (413)
T 3ne5_B 194 DIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ 239 (413)
T ss_dssp HHHHHHHHTSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEE
T ss_pred HHHHHHHhccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEe
Confidence 12458999999999999999999999999999883
No 36
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=98.38 E-value=8.8e-08 Score=86.61 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=61.2
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecce-------------------------------------
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL------------------------------------- 282 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~------------------------------------- 282 (316)
..|.+++.|++.. ++|++||.|++||+|+.|+...+
T Consensus 23 ~~v~a~~~G~V~~-------v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~ 95 (277)
T 2f1m_A 23 AEVRPQVSGIILK-------RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYI 95 (277)
T ss_dssp EEECCSSCEEEEE-------ECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTC
T ss_pred EEEEccccEEEEE-------EEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5789999999998 89999999999999999986321
Q ss_pred ----------------------------------eeEEecCCCeEEEEEecCCCCccCCC--CeEEEEc
Q 021186 283 ----------------------------------MNEIEADRSGTIVEIIAEDRKPVSVD--TPLFVIE 315 (316)
Q Consensus 283 ----------------------------------~~eI~Ap~sGtV~eIlVe~Gd~V~~G--qpL~~Ie 315 (316)
...|+||++|+|.++.++.|+.|..| ++|+.|.
T Consensus 96 s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~ 164 (277)
T 2f1m_A 96 SKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQ 164 (277)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEe
Confidence 24799999999999999999999999 5899874
No 37
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=98.38 E-value=3.1e-07 Score=85.25 Aligned_cols=71 Identities=20% Similarity=0.330 Sum_probs=62.0
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecce-----------------------------------
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL----------------------------------- 282 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~----------------------------------- 282 (316)
....|.++..|++.. ++|++||.|++||+|+.|+...+
T Consensus 30 ~~~~v~~~~~G~V~~-------v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~ 102 (341)
T 3fpp_A 30 RKVDVGAQVSGQLKT-------LSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQ 102 (341)
T ss_dssp SEEECCCSSCEEEEE-------ECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred EEEEEeccCCcEEEE-------EEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446899999999998 89999999999999999986421
Q ss_pred --------------------------------------------------eeEEecCCCeEEEEEecCCCCccCCCCe--
Q 021186 283 --------------------------------------------------MNEIEADRSGTIVEIIAEDRKPVSVDTP-- 310 (316)
Q Consensus 283 --------------------------------------------------~~eI~Ap~sGtV~eIlVe~Gd~V~~Gqp-- 310 (316)
...|+||++|+|.++.++.|+.|..|++
T Consensus 103 ~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~ 182 (341)
T 3fpp_A 103 QRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAP 182 (341)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCC
T ss_pred HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCc
Confidence 1459999999999999999999999998
Q ss_pred -EEEEc
Q 021186 311 -LFVIE 315 (316)
Q Consensus 311 -L~~Ie 315 (316)
|+.|.
T Consensus 183 ~l~~i~ 188 (341)
T 3fpp_A 183 NILTLA 188 (341)
T ss_dssp CCEEEE
T ss_pred eEEEEe
Confidence 88763
No 38
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=98.22 E-value=5e-07 Score=85.74 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=62.2
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecce-----------------------------------
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL----------------------------------- 282 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~----------------------------------- 282 (316)
....|.+++.|++.. ++|++||.|++||+|+.|+...+
T Consensus 42 ~~~~v~a~v~G~V~~-------v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~ 114 (369)
T 1vf7_A 42 RIAEVRPQVNGIILK-------RLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQY 114 (369)
T ss_dssp CEEEECCSSCEEEEE-------CCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred eEEEEEeeCceEEEE-------EEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 345799999999998 89999999999999999975321
Q ss_pred ----------------------eeEEecCCCeEEEEEecCCCCccCCC--CeEEEEc
Q 021186 283 ----------------------MNEIEADRSGTIVEIIAEDRKPVSVD--TPLFVIE 315 (316)
Q Consensus 283 ----------------------~~eI~Ap~sGtV~eIlVe~Gd~V~~G--qpL~~Ie 315 (316)
...|+||++|+|.++.++.|+.|..| ++|+.|.
T Consensus 115 ~~a~~~~~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~ 171 (369)
T 1vf7_A 115 ADANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQ 171 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEe
Confidence 25799999999999999999999995 8999874
No 39
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=98.00 E-value=6.4e-06 Score=69.30 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=43.5
Q ss_pred cCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCC---ccC---CCC-eEEEEc
Q 021186 263 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK---PVS---VDT-PLFVIE 315 (316)
Q Consensus 263 kvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd---~V~---~Gq-pL~~Ie 315 (316)
++|+.|++|+.+|.||++|+..+|.||++|+|++++.+-.+ .|. ||+ =|++|+
T Consensus 41 ~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~ 100 (125)
T 3klr_A 41 EVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMT 100 (125)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEE
T ss_pred CCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEE
Confidence 88999999999999999999999999999999999755433 333 554 366654
No 40
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=97.98 E-value=3.8e-07 Score=85.33 Aligned_cols=70 Identities=19% Similarity=0.406 Sum_probs=60.7
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecce-----------------------------------
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL----------------------------------- 282 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~----------------------------------- 282 (316)
....|.++..|++.. ++|++||.|++||+|+.|+....
T Consensus 31 ~~~~v~~~~~G~V~~-------v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~ 103 (369)
T 4dk0_A 31 NTVDVGAQVSGKITK-------LYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRL 103 (369)
T ss_dssp SCCCBCCCSCSBCCE-------ECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred eeEEEecCCCcEEEE-------EEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999988 89999999999999999986421
Q ss_pred --------------------------------------------------eeEEecCCCeEEEEEecCCCCccCCCCe--
Q 021186 283 --------------------------------------------------MNEIEADRSGTIVEIIAEDRKPVSVDTP-- 310 (316)
Q Consensus 283 --------------------------------------------------~~eI~Ap~sGtV~eIlVe~Gd~V~~Gqp-- 310 (316)
...|+||++|+|.++.++.|+.|..|++
T Consensus 104 ~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~ 183 (369)
T 4dk0_A 104 SKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTP 183 (369)
T ss_dssp HHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCC
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcc
Confidence 1359999999999999999999999998
Q ss_pred -EEEE
Q 021186 311 -LFVI 314 (316)
Q Consensus 311 -L~~I 314 (316)
|+.|
T Consensus 184 ~l~~i 188 (369)
T 4dk0_A 184 TIIKV 188 (369)
T ss_dssp CCBBC
T ss_pred eEEEE
Confidence 6654
No 41
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=97.85 E-value=5.4e-05 Score=71.89 Aligned_cols=68 Identities=21% Similarity=0.183 Sum_probs=58.5
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEec----ceeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM----KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV 313 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEam----K~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~ 313 (316)
....|+||..|.|+. +++.||.|++||+|+.|... ....+|+||++|+|..... .-.|..|+.|+.
T Consensus 256 ~~~~v~A~~~Gl~~~--------~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~--~~~V~~G~~l~~ 325 (331)
T 3na6_A 256 GDCYLFSEHDGLFEI--------MIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHF--PGMIKSGDCAAV 325 (331)
T ss_dssp SCCCEECSSCEEEEE--------SSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEEC--SSEECTTCEEEE
T ss_pred CcEEEeCCCCeEEEE--------cCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeC--CCccCCCCEEEE
Confidence 346899999998875 79999999999999999984 5679999999999987654 568889999998
Q ss_pred Ec
Q 021186 314 IE 315 (316)
Q Consensus 314 Ie 315 (316)
|.
T Consensus 326 Ia 327 (331)
T 3na6_A 326 IG 327 (331)
T ss_dssp EE
T ss_pred Ee
Confidence 84
No 42
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.70 E-value=4.3e-05 Score=65.74 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=38.1
Q ss_pred cCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCC
Q 021186 263 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 303 (316)
Q Consensus 263 kvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd 303 (316)
++|+.|++|+.+|.||++|...+|.||++|+|++++-+-.+
T Consensus 63 ~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d 103 (143)
T 3mxu_A 63 QNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAE 103 (143)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred CCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhh
Confidence 89999999999999999999999999999999999865544
No 43
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.70 E-value=3.4e-05 Score=65.90 Aligned_cols=37 Identities=32% Similarity=0.489 Sum_probs=35.6
Q ss_pred cCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEec
Q 021186 263 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA 299 (316)
Q Consensus 263 kvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlV 299 (316)
++|++|++|+.+|.||++|...+|.||++|+|++++-
T Consensus 58 ~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~ 94 (137)
T 3tzu_A 58 EVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNT 94 (137)
T ss_dssp CTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECH
T ss_pred CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehh
Confidence 8999999999999999999999999999999999964
No 44
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=97.66 E-value=0.00013 Score=69.65 Aligned_cols=67 Identities=21% Similarity=0.169 Sum_probs=57.8
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEe----cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA----MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEa----mK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
...++|+..|.|. +.++.||.|++||+|+.|+. ++...+|+||.+|+|..+. ....|..|+.|+.|
T Consensus 267 ~~~v~A~~~G~~~--------~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~V~~Gd~l~~i 336 (354)
T 3cdx_A 267 DAYVMAPRTGLFE--------PTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGRVTRGDAVAVV 336 (354)
T ss_dssp GGEEECSSCEEEE--------ESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSEECTTCEEEEE
T ss_pred cEEEECCCCEEEE--------EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCccCCCCEEEEE
Confidence 3568999999665 47899999999999999998 4788999999999998775 67789999999987
Q ss_pred c
Q 021186 315 E 315 (316)
Q Consensus 315 e 315 (316)
.
T Consensus 337 a 337 (354)
T 3cdx_A 337 M 337 (354)
T ss_dssp E
T ss_pred e
Confidence 3
No 45
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=97.61 E-value=0.00012 Score=70.65 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=58.5
Q ss_pred CCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEe------cceeeEEecCCCeEEEEEecCCCCccCCCCeE
Q 021186 238 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA------MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPL 311 (316)
Q Consensus 238 ~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEa------mK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL 311 (316)
+...|+||..|.|+. .++.||.|++||+|+.|.. .....+|+||.+|+|.... ..-.|..|+.|
T Consensus 289 ~~~~v~A~~~Gl~~~--------~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~--~~p~V~~G~~l 358 (368)
T 3fmc_A 289 NYRKFHAPKAGMVEY--------LGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHF--ASASVHQGTEL 358 (368)
T ss_dssp GEEEEECSSCEEEEE--------CSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEEC--SSSEECTTCEE
T ss_pred CcEEEecCCCEEEEE--------eCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEE
Confidence 345789999999986 8999999999999999998 5577899999999998765 44689999999
Q ss_pred EEE
Q 021186 312 FVI 314 (316)
Q Consensus 312 ~~I 314 (316)
+.|
T Consensus 359 ~~i 361 (368)
T 3fmc_A 359 YKV 361 (368)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
No 46
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=97.47 E-value=0.00014 Score=63.54 Aligned_cols=65 Identities=17% Similarity=0.325 Sum_probs=55.9
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEec----CCeEEEEEecceeeEEecCCCeEEEEE------------------
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIVEI------------------ 297 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~Vkk----GqvL~iIEamK~~~eI~Ap~sGtV~eI------------------ 297 (316)
..|.||+.|++.. ..++.|.+-. |+-+++.-. ...|+||++|+|..+
T Consensus 13 ~~i~aP~~G~vv~--------l~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evL 81 (162)
T 1ax3_A 13 EVFVSPITGEIHP--------ITDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREIL 81 (162)
T ss_dssp SSCCCCCSEEEEE--------GGGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEE
T ss_pred CEEEecCceEEEE--------eEECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEE
Confidence 3699999999997 5778888777 888888776 457899999999988
Q ss_pred -----------------ecCCCCccCCCCeEEEEc
Q 021186 298 -----------------IAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 298 -----------------lVe~Gd~V~~GqpL~~Ie 315 (316)
+|+.||.|..||+|+++.
T Consensus 82 iHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 82 IHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp EECSSSTTTTTTTTEEESCCCCSEECSEEEEEEEC
T ss_pred EEECccchhcCCCccEEEEeCCCEEcCCCEEEEEC
Confidence 899999999999999874
No 47
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=5.3e-05 Score=59.87 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=41.8
Q ss_pred CCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 271 GQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 271 GqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
|..+|.++.++-...|.||.+|+|.++++++||.|..||+|+.|+
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le 49 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME 49 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEE
Confidence 556689999999999999999999999999999999999999986
No 48
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=97.38 E-value=0.00021 Score=62.37 Aligned_cols=65 Identities=28% Similarity=0.369 Sum_probs=56.1
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEec----CCeEEEEEecceeeEEecCCCeEEEEE------------------
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIVEI------------------ 297 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~Vkk----GqvL~iIEamK~~~eI~Ap~sGtV~eI------------------ 297 (316)
..|.||+.|++.. .-+++|.+-. |+-+++...+ ..++||++|+|..+
T Consensus 13 ~~i~aP~~G~vv~--------l~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evL 81 (161)
T 1f3z_A 13 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELF 81 (161)
T ss_dssp EEEECSSCEEEEE--------GGGSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cEEEecCCeEEEE--------eEECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEE
Confidence 3599999999997 4577888777 8888887765 58899999999988
Q ss_pred -----------------ecCCCCccCCCCeEEEEc
Q 021186 298 -----------------IAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 298 -----------------lVe~Gd~V~~GqpL~~Ie 315 (316)
+|+.||.|..||+|+++.
T Consensus 82 iHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 82 VHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp EECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred EEECccchhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence 899999999999999874
No 49
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=97.38 E-value=0.00022 Score=61.71 Aligned_cols=65 Identities=25% Similarity=0.349 Sum_probs=56.1
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEec----CCeEEEEEecceeeEEecCCCeEEEE-------------------
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIVE------------------- 296 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~Vkk----GqvL~iIEamK~~~eI~Ap~sGtV~e------------------- 296 (316)
..|.||+.|++.. .-+++|.+-. |+-+++...+ ..++||++|+|..
T Consensus 8 ~~i~aP~~G~vv~--------l~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evL 76 (154)
T 2gpr_A 8 LKVLAPCDGTIIT--------LDEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEIL 76 (154)
T ss_dssp EEEECSSSEEEEC--------GGGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEE
T ss_pred CEEEecCCeEEEE--------eeECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEE
Confidence 3689999999997 5688888877 8888888775 5899999999997
Q ss_pred ----------------EecCCCCccCCCCeEEEEc
Q 021186 297 ----------------IIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 297 ----------------IlVe~Gd~V~~GqpL~~Ie 315 (316)
++|+.||.|..||+|+++.
T Consensus 77 iHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d 111 (154)
T 2gpr_A 77 LHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp EECSSSGGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred EEECcchhhcCCCceEEEEcCCCEEcCCCEEEEEC
Confidence 4899999999999999874
No 50
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.34 E-value=0.00024 Score=61.82 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=35.7
Q ss_pred cCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEec
Q 021186 263 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA 299 (316)
Q Consensus 263 kvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlV 299 (316)
++|+.|++|+.+|.||+.|...+|.||++|+|++++-
T Consensus 68 ~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~ 104 (155)
T 3hgb_A 68 VIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS 104 (155)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence 8899999999999999999999999999999999974
No 51
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=96.84 E-value=0.0032 Score=59.27 Aligned_cols=65 Identities=23% Similarity=0.317 Sum_probs=54.8
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEe----cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA----MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEa----mK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
..++||..|.+.. +++.|+.|++||+|+.|.. ++...+|+||++|+|.-.. ..-.|..|+.|+.|
T Consensus 258 ~~~~a~~~G~~~~--------~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l~~i 326 (332)
T 2qj8_A 258 DQLKSPSPGIFEP--------RCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEVAIL 326 (332)
T ss_dssp GEEECSSSEEEEE--------CSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEEEEE
T ss_pred eEEeCCCCeEEEE--------eCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEEEEE
Confidence 3678999998775 6899999999999999976 5678899999999997665 55678888888877
No 52
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=96.78 E-value=0.0012 Score=48.11 Aligned_cols=31 Identities=6% Similarity=0.245 Sum_probs=29.2
Q ss_pred EEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 285 EIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 285 eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.|.|+.+|+|.++++++|+.|..||+|+.|+
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~ 31 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILE 31 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEE
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEE
Confidence 3789999999999999999999999999986
No 53
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=96.69 E-value=0.0017 Score=47.24 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=30.1
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|.|+.+|+|.++++++||.|..||+|+.|+
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~ 37 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLE 37 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEE
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEe
Confidence 46899999999999999999999999999986
No 54
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=96.53 E-value=0.0022 Score=47.32 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=30.7
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|.|+.+|+|.++++++|+.|..||+|+.|+
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~ 40 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLE 40 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEE
T ss_pred CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEE
Confidence 357899999999999999999999999999985
No 55
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=96.35 E-value=0.0018 Score=49.47 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=30.2
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|.||.+|+|.++++++|+.|..||+|+.|+
T Consensus 6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie 37 (84)
T 2kcc_A 6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME 37 (84)
T ss_dssp TEECCSSSCCEEEESSCTTEEECTTCEEEEEE
T ss_pred ceEECCCCEEEEEEECCCCCEECCCCEEEEEE
Confidence 46999999999999999999999999999986
No 56
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=95.85 E-value=0.0074 Score=54.18 Aligned_cols=51 Identities=31% Similarity=0.382 Sum_probs=40.9
Q ss_pred CCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEe-----------------------------cCCCCccC
Q 021186 256 PGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII-----------------------------AEDRKPVS 306 (316)
Q Consensus 256 p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIl-----------------------------Ve~Gd~V~ 306 (316)
-++..+|+.|+.|++||+||.-+ +|.+.++|+|.+.. +++|+.|.
T Consensus 19 yGA~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~k~lP~I~I~d~~G~~~~~Y~LPvgA~l~~~V~dG~~V~ 92 (193)
T 2xha_A 19 PKAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVK 92 (193)
T ss_dssp TTCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTSSCEEEEEEEGGGCCCTTCCTTCEEC
T ss_pred CCCEEEECCCCEEcCCCEEEEeC------cEEEccCEEEEeeccCcEEEEEcCCCCEeEEEEcCCCCEEEEEcCCCCEEc
Confidence 45557899999999999999766 88888888886543 77788888
Q ss_pred CCCeEE
Q 021186 307 VDTPLF 312 (316)
Q Consensus 307 ~GqpL~ 312 (316)
.|++|+
T Consensus 93 ~GdvLA 98 (193)
T 2xha_A 93 QGLPLS 98 (193)
T ss_dssp TTSBSS
T ss_pred CCCEEe
Confidence 888764
No 57
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=95.77 E-value=0.0099 Score=54.82 Aligned_cols=54 Identities=26% Similarity=0.263 Sum_probs=42.0
Q ss_pred ccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 262 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 262 VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
|+.|+.-..=..-+.|+.. -...|.++.+|+|.++++++||.|..||+|+.|.+
T Consensus 11 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 64 (341)
T 3fpp_A 11 VRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 64 (341)
T ss_dssp --CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECC
T ss_pred EEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEECh
Confidence 4455544444456777776 45689999999999999999999999999999864
No 58
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=95.76 E-value=0.0056 Score=47.76 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=30.6
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|.|+.+|+|.++++++||.|..||+|+.|+
T Consensus 25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie 57 (94)
T 2jku_A 25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIE 57 (94)
T ss_dssp CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEE
T ss_pred ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEe
Confidence 456889999999999999999999999999986
No 59
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=95.74 E-value=0.006 Score=47.92 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=30.6
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|.|+.+|+|.++++++|+.|..||+|+.|+
T Consensus 14 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie 46 (99)
T 2ejm_A 14 QGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMI 46 (99)
T ss_dssp CSSCBCSSSEEEEEECCCTTEEECSSCEEEEEE
T ss_pred ceEEecCCCEEEEEEECCCCCEECCCCEEEEEE
Confidence 356889999999999999999999999999986
No 60
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=95.65 E-value=0.0072 Score=56.16 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=44.4
Q ss_pred ccCCCEEecCCeEEEEEec-ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 262 VKVGDRVQKGQVLCIIEAM-KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 262 VkvGD~VkkGqvL~iIEam-K~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
|+.|+.-..=..-+.|++. .-...|.++.+|+|.++++++|+.|..||+|+.|.+
T Consensus 35 v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~ 90 (359)
T 3lnn_A 35 ATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDS 90 (359)
T ss_dssp CEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEEC
T ss_pred eeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEECh
Confidence 3444444444566788875 567889999999999999999999999999999863
No 61
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=95.57 E-value=0.016 Score=51.66 Aligned_cols=65 Identities=25% Similarity=0.319 Sum_probs=51.9
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEec----CCeEEEEEecceeeEEecCCCeEEE--------------------
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIV-------------------- 295 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~Vkk----GqvL~iIEamK~~~eI~Ap~sGtV~-------------------- 295 (316)
..|.||+.|++.. +-++-|.|-. |+-++++=.. ..|.||++|+|.
T Consensus 35 ~~i~aPv~G~vi~--------L~eV~D~vFs~~~mGdG~AI~P~~---g~v~AP~dG~V~~vfpT~HAigi~s~~G~EvL 103 (183)
T 3our_B 35 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVNGTIGKIFETNHAFSIESDDGVELF 103 (183)
T ss_dssp EEEECSSCEEEEE--------GGGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eEEEeecceEEEE--------chhCcChHhcccCccCeEEEEcCC---CEEEeCCCeEEEEECCCCCEEEEEeCCCCEEE
Confidence 4699999999986 5677776644 7777776543 378899999885
Q ss_pred ---------------EEecCCCCccCCCCeEEEEc
Q 021186 296 ---------------EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 296 ---------------eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+.+|++||.|..||+|+++.
T Consensus 104 IHIGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD 138 (183)
T 3our_B 104 VHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFD 138 (183)
T ss_dssp EECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred EEecccccccCCccceEEEeCcCEEcCCCEEEEEC
Confidence 67888999999999999874
No 62
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=95.57 E-value=0.012 Score=43.61 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=30.4
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEe
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEa 279 (316)
..|+||..|++.. .++++||.|..|++|+.|++
T Consensus 45 ~~i~Ap~~G~v~~-------~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 45 VKIPSPVRGKIVK-------ILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp EECCCCCCEEEEE-------ECCCTTCEECSCSEEEEEEC
T ss_pred EEEECCCCEEEEE-------EEeCCcCEECCCCEEEEEEC
Confidence 5799999999998 79999999999999999874
No 63
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=95.44 E-value=0.0081 Score=44.79 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=29.8
Q ss_pred eEEecCCCeEEEEE-------ecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEI-------IAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eI-------lVe~Gd~V~~GqpL~~Ie 315 (316)
..|.||..|+|.++ ++++|+.|..||+|+.|+
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie 43 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVE 43 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEE
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEE
Confidence 36899999999998 999999999999999986
No 64
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=95.26 E-value=0.012 Score=43.68 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=31.4
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEe
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEa 279 (316)
...|+||..|++.+ .++++|+.|..|++|+.|+.
T Consensus 43 ~~~i~Ap~~G~v~~-------~~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 43 SMEVPAPFAGVVKE-------LKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp CEEEEBSSCEEEEE-------CCCCTTCEECTTCCCEEEES
T ss_pred eEEEeCCCCEEEEE-------EecCCCCEECCCCEEEEEEc
Confidence 45899999999998 89999999999999999985
No 65
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=95.00 E-value=0.015 Score=54.83 Aligned_cols=44 Identities=18% Similarity=0.358 Sum_probs=36.9
Q ss_pred CeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 272 QVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 272 qvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
...+.|+.. -...|.++.+|+|.++++++|+.|..||+|++|.+
T Consensus 33 ~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~ 76 (369)
T 1vf7_A 33 ELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP 76 (369)
T ss_dssp EEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred EEEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 344566664 35679999999999999999999999999999964
No 66
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=94.95 E-value=0.023 Score=54.97 Aligned_cols=51 Identities=31% Similarity=0.382 Sum_probs=40.9
Q ss_pred CCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEe-----------------------------cCCCCccC
Q 021186 256 PGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII-----------------------------AEDRKPVS 306 (316)
Q Consensus 256 p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIl-----------------------------Ve~Gd~V~ 306 (316)
-++..+|+.|+.|++||+||.=+ +|.+.++|+|.+.. +++|+.|.
T Consensus 59 yga~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~ 132 (352)
T 2xhc_A 59 PKAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVK 132 (352)
T ss_dssp TTCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEEC
T ss_pred CCCEEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEc
Confidence 34556799999999999999876 78888888876533 77888888
Q ss_pred CCCeEE
Q 021186 307 VDTPLF 312 (316)
Q Consensus 307 ~GqpL~ 312 (316)
.|++|+
T Consensus 133 ~G~vla 138 (352)
T 2xhc_A 133 QGLPLS 138 (352)
T ss_dssp TTCBSB
T ss_pred cCcEEe
Confidence 888775
No 67
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=94.77 E-value=0.024 Score=42.13 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=30.9
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEec
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
..|+||..|++.. .++++|+.|..|++|+.|+..
T Consensus 42 ~~i~Ap~~G~v~~-------~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 42 MEVPSPKAGVVKS-------VSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EEEECSSSSEEEE-------ESCCTTCEEETTSEEEEEECC
T ss_pred EEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEecC
Confidence 4799999999998 799999999999999999753
No 68
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=94.57 E-value=0.015 Score=54.03 Aligned_cols=55 Identities=22% Similarity=0.182 Sum_probs=43.5
Q ss_pred CccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 021186 261 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 316 (316)
Q Consensus 261 ~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~IeP 316 (316)
.|+.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|..||+|++|.+
T Consensus 11 ~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~ 65 (369)
T 4dk0_A 11 EVKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDS 65 (369)
T ss_dssp CCCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCC
T ss_pred EEEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcC
Confidence 34555555555566777765 35578999999999999999999999999999863
No 69
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=94.56 E-value=0.032 Score=48.16 Aligned_cols=73 Identities=12% Similarity=0.161 Sum_probs=46.9
Q ss_pred CCccCCcCeEEEcCCC----------CCC------------------CCCccCCCEEecCCeEEEEEecc---------e
Q 021186 240 PPLKCPMAGTFYRSPA----------PGE------------------PPFVKVGDRVQKGQVLCIIEAMK---------L 282 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~----------p~~------------------~~~VkvGD~VkkGqvL~iIEamK---------~ 282 (316)
..++||..|++....+ -+. ..+|++||+|++||+|+.+.-.. .
T Consensus 45 ~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t 124 (154)
T 2gpr_A 45 NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKS 124 (154)
T ss_dssp SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCE
T ss_pred CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeE
Confidence 4799999999876321 111 14899999999999999986321 2
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.+-|.. .+ +..+....+..|..|+.|+.++
T Consensus 125 ~vvvtn-~~--~~~~~~~~~~~v~~g~~~~~~~ 154 (154)
T 2gpr_A 125 PIIFTN-NG--GKTLEIVKMGEVKQGDVVAILK 154 (154)
T ss_dssp EEEEEE-CS--SCCCSCBCCEEECTTCEEEEEC
T ss_pred EEEEEC-CC--cceEEEccCceEcCCCEEEEeC
Confidence 222222 11 1223334466788999998874
No 70
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=94.48 E-value=0.045 Score=41.72 Aligned_cols=27 Identities=22% Similarity=0.086 Sum_probs=25.1
Q ss_pred CCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 289 DRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 289 p~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|+|.++++++||.|..||+|+.|+
T Consensus 17 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie 43 (87)
T 3crk_C 17 MTMGTVQRWEKKVGEKLSEGDLLAEIE 43 (87)
T ss_dssp CCEEEEEEECSCTTCEECTTCEEEEEE
T ss_pred CCcEEEEEEEcCCCCEEcCCCEEEEEE
Confidence 358999999999999999999999986
No 71
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=94.43 E-value=0.026 Score=41.95 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=30.4
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEe
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEa 279 (316)
..|+||..|++.. .++++|+.|..|++|+.|+.
T Consensus 45 ~~i~Ap~~G~v~~-------~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 45 MEVLAEADGVIAE-------IVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEECSSCEEEEE-------ESSCTTCEECTTCEEEEECC
T ss_pred EEEEcCCCEEEEE-------EEcCCcCEECCCCEEEEEec
Confidence 5899999999998 79999999999999999874
No 72
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=94.40 E-value=0.031 Score=41.63 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=27.3
Q ss_pred EecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 286 IEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 286 I~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+-++..|+|.++++++||.|..||+|+.|+
T Consensus 10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie 39 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLE 39 (81)
T ss_dssp CSSCSSEEEEEECCCSSCBCCSSCCCEEEE
T ss_pred CCCCCcEEEEEEEcCCCCEECCCCEEEEEE
Confidence 336789999999999999999999999986
No 73
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=94.25 E-value=0.045 Score=42.62 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=25.1
Q ss_pred CCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 289 DRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 289 p~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|+|.++++++||.|..||+|+.|+
T Consensus 16 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie 42 (93)
T 1k8m_A 16 IREVTVKEWYVKEGDTVSQFDSICEVQ 42 (93)
T ss_dssp SCCEEEEEECCCTTCEECSSSCCEEEE
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEE
Confidence 358999999999999999999999986
No 74
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=94.20 E-value=0.035 Score=44.61 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=28.7
Q ss_pred eeeEEecC------CCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 282 LMNEIEAD------RSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 282 ~~~eI~Ap------~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
|..+|+.| ..|+|.++++++||.|..||+|+.|+
T Consensus 6 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE 45 (108)
T 2dne_A 6 SGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVE 45 (108)
T ss_dssp CCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEE
T ss_pred cceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEE
Confidence 44555544 57999999999999999999999996
No 75
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=94.10 E-value=0.044 Score=52.78 Aligned_cols=54 Identities=17% Similarity=0.122 Sum_probs=42.6
Q ss_pred ccCCCEEecCCeEEEEEec-ceeeEEecCCCeEEEEEec-CCCCccCCCCeEEEEc
Q 021186 262 VKVGDRVQKGQVLCIIEAM-KLMNEIEADRSGTIVEIIA-EDRKPVSVDTPLFVIE 315 (316)
Q Consensus 262 VkvGD~VkkGqvL~iIEam-K~~~eI~Ap~sGtV~eIlV-e~Gd~V~~GqpL~~Ie 315 (316)
|+.|+.-..=...+.|+.+ .-...|.++.+|+|.+++| ++||.|..||+|++|.
T Consensus 99 v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld 154 (413)
T 3ne5_B 99 VTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLT 154 (413)
T ss_dssp CEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEE
T ss_pred EEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEc
Confidence 3444444444566677753 4568899999999999999 9999999999999986
No 76
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=94.01 E-value=0.057 Score=47.52 Aligned_cols=52 Identities=27% Similarity=0.323 Sum_probs=41.9
Q ss_pred ccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEeccee-eEEecCCCeEEEEEecC
Q 021186 242 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLM-NEIEADRSGTIVEIIAE 300 (316)
Q Consensus 242 V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~-~eI~Ap~sGtV~eIlVe 300 (316)
..-|.-|.-.. +.+.+|++|.+|+.|+.|.+.|-. .-++||++|+|.-+.=-
T Consensus 103 ~lvpaeG~~V~-------~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~ 155 (169)
T 3d4r_A 103 ISVPAEGYKVY-------PIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEI 155 (169)
T ss_dssp EEEEECSSEEE-------ECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEE
T ss_pred EEEEeCceEEE-------EEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEec
Confidence 33456665444 689999999999999999999975 55999999999977643
No 77
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=93.79 E-value=0.022 Score=43.19 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=31.8
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEec
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
...|+||..|++.+ .++++|+.|..|++|+.|+..
T Consensus 39 ~~~i~Ap~~G~V~~-------~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 39 SMEVPAPFAGVVKE-------LKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp EEEEECSSCBCCCE-------ECSCTTCCBCTTSEEEEEECC
T ss_pred EEEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEEcC
Confidence 45899999999988 799999999999999999864
No 78
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=93.57 E-value=0.025 Score=42.30 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=30.7
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEe
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEa 279 (316)
...|+||..|++.+ .++++||.|..|++|+.|+.
T Consensus 45 ~~~i~Ap~~G~v~~-------~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 45 VLEVPASADGILDA-------VLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCCCBCCSBCCCCB-------CTTCTTCEECSSSEEEBCCC
T ss_pred EEEEECCCCEEEEE-------EEcCCcCEECCCCEEEEEec
Confidence 46899999999998 89999999999999998864
No 79
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=93.49 E-value=0.081 Score=46.79 Aligned_cols=48 Identities=15% Similarity=0.036 Sum_probs=41.2
Q ss_pred CCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCc
Q 021186 255 APGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP 304 (316)
Q Consensus 255 ~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~ 304 (316)
+.+...+|+.|+.|++||+||.. ++...+|-++++|+|.-..+.+|..
T Consensus 59 pyGa~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t 106 (190)
T 2auk_A 59 PYGAVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT 106 (190)
T ss_dssp CTTCEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTT
T ss_pred CCCCEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcc
Confidence 45666889999999999999966 5899999999999999887777654
No 80
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=92.92 E-value=0.098 Score=43.65 Aligned_cols=34 Identities=18% Similarity=0.043 Sum_probs=28.5
Q ss_pred eeeEEecC------CCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 282 LMNEIEAD------RSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 282 ~~~eI~Ap------~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+..+|..| .+|+|.++++++||.|..||+|+.|+
T Consensus 26 ~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iE 65 (128)
T 1y8o_B 26 PHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIE 65 (128)
T ss_dssp SEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEE
T ss_pred cceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEE
Confidence 34455544 46999999999999999999999986
No 81
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=92.74 E-value=0.073 Score=46.29 Aligned_cols=40 Identities=30% Similarity=0.460 Sum_probs=30.4
Q ss_pred CCccCCcCeEEEcCCC----------CCC------------------CCCccCCCEEecCCeEEEEEe
Q 021186 240 PPLKCPMAGTFYRSPA----------PGE------------------PPFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~----------p~~------------------~~~VkvGD~VkkGqvL~iIEa 279 (316)
..|+||..|++....+ -+. ..+|++||+|++||.|+.+.-
T Consensus 50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 50 GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEECH
T ss_pred CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCccEEEEeCCCEEcCCCEEEEECH
Confidence 4789999999886321 111 138999999999999999863
No 82
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.56 E-value=0.099 Score=41.14 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=31.8
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEE-ecCCeEEEEEec
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRV-QKGQVLCIIEAM 280 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~V-kkGqvL~iIEam 280 (316)
...|+||..|++.+ +++++|+.| ..|++|+.|+..
T Consensus 50 ~~~i~Ap~~G~v~~-------i~v~~G~~Vv~~G~~l~~i~~~ 85 (98)
T 2dnc_A 50 VVTLDASDDGILAK-------IVVEEGSKNIRLGSLIGLIVEE 85 (98)
T ss_dssp EEEEECSSCEEEEE-------CSSCTTCCCEESSCEEEEEECT
T ss_pred eeEEeCCCCEEEEE-------EEeCCCCEEcCCCCEEEEEecC
Confidence 35899999999998 899999998 999999999864
No 83
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=92.54 E-value=0.039 Score=49.48 Aligned_cols=53 Identities=25% Similarity=0.221 Sum_probs=41.3
Q ss_pred CCCCCCC--ccCCCEEecCCeEEEEEecceeeEEecCCCeEEEE--------------------------E--ecCCCCc
Q 021186 255 APGEPPF--VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVE--------------------------I--IAEDRKP 304 (316)
Q Consensus 255 ~p~~~~~--VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~e--------------------------I--lVe~Gd~ 304 (316)
+.++-.. |+.|+.|+.||+|+ -...|-|+.+|+|.- + +|.+||.
T Consensus 76 PvgA~l~~~V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~ 149 (193)
T 2xha_A 76 PESAGIEPGLRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKE 149 (193)
T ss_dssp EGGGCCCTTCCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCE
T ss_pred CCCCEEEEEcCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCE
Confidence 3455567 99999999999998 334566777777752 3 8999999
Q ss_pred cCCCCeEEE
Q 021186 305 VSVDTPLFV 313 (316)
Q Consensus 305 V~~GqpL~~ 313 (316)
|..|++|..
T Consensus 150 V~~Ge~L~D 158 (193)
T 2xha_A 150 VKQGEMLAE 158 (193)
T ss_dssp ECTTCEEEC
T ss_pred ECCCCCccc
Confidence 999999973
No 84
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=91.79 E-value=0.12 Score=53.34 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=30.8
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|+||..|+|.+++|++||.|..||+|+.|+
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE 644 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIE 644 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTCEECTTCEEEEEE
T ss_pred CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEE
Confidence 456999999999999999999999999999986
No 85
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=91.52 E-value=0.19 Score=43.63 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=30.1
Q ss_pred CCccCCcCeEEEcCCC----------CC------------------CCCCccCCCEEecCCeEEEEEe
Q 021186 240 PPLKCPMAGTFYRSPA----------PG------------------EPPFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~----------p~------------------~~~~VkvGD~VkkGqvL~iIEa 279 (316)
..|+||..|++....+ -+ -..+|++||+|++||.|+.+.-
T Consensus 50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 50 NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCccEEEEeCcCEECCCCEEEEECH
Confidence 4789999999876321 11 1138999999999999999863
No 86
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=91.37 E-value=0.13 Score=40.61 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=31.5
Q ss_pred CCCccCCcCeEEEcCCCCCCCCCccCCCEEecC-CeEEEEEecc
Q 021186 239 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKG-QVLCIIEAMK 281 (316)
Q Consensus 239 ~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkG-qvL~iIEamK 281 (316)
...|+||+.|++.. .++++|+.|..| +.|+.|....
T Consensus 67 ~~~i~AP~~G~V~~-------~~~~~G~~v~~g~~~l~~i~~~~ 103 (116)
T 2k32_A 67 HTEIKAPFDGTIGD-------ALVNIGDYVSASTTELVRVTNLN 103 (116)
T ss_dssp EEEEECSSSEEECC-------CSCCTTCEECTTTSCCEEEECSC
T ss_pred CCEEEcCCCEEEEE-------EECCCCCEEcCCCcEEEEEECCC
Confidence 35899999999998 789999999999 9999987643
No 87
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=90.00 E-value=0.26 Score=46.92 Aligned_cols=62 Identities=8% Similarity=0.007 Sum_probs=46.6
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
.|.++..|.+..- ...++.|+.|++||+|+.+-. .+|++|++|++.-. . .-.|..|+.++.|
T Consensus 265 ~v~a~~~g~~~~~-----~~~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~~--p-~p~V~~G~~~~~i 326 (350)
T 2bco_A 265 TIVRLHDDFDFMF-----DDNVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIVF--P-NRHVAIGQRAALM 326 (350)
T ss_dssp EEECCSSSEEESS-----CTTCCBTEECCTTCEEEEETT----EEEECSSSSCEEES--C-CTTCCTTSEEEEE
T ss_pred EEEcCCCCeEEec-----cccccCCCEeCCCCEEEEECC----EEEEeCCCCEEEEe--c-CCCCCCCcEEEEE
Confidence 4677777766521 035789999999999999954 78999999986643 2 5688888877765
No 88
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=88.92 E-value=0.28 Score=54.74 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=30.7
Q ss_pred CCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEE
Q 021186 257 GEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIV 295 (316)
Q Consensus 257 ~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~ 295 (316)
+...+|+.|+.|++||+||..+ ....+|-++++|+|.
T Consensus 1000 gs~l~v~~g~~V~~g~~ia~wD--p~~~piise~~G~v~ 1036 (1407)
T 3lu0_D 1000 GAVLAKGDGEQVAGGETVANWD--PHTMPVITEVSGFVR 1036 (1407)
T ss_dssp TCEESSCSSCEECTTCEEEECC--SSCCCEECSSCEEEE
T ss_pred CCEEEEcCCCEecCCCEEEEEe--cCceeEEeccceEEE
Confidence 4557899999999999999774 677888888888775
No 89
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=88.87 E-value=0.26 Score=51.74 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=30.4
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|.||..|+|.+++|++||.|..||+|+.|+
T Consensus 650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iE 681 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLS 681 (718)
T ss_dssp SCEECSSCEEEEEECSCTTCCBCTTCCCEEEE
T ss_pred ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEe
Confidence 46999999999999999999999999999986
No 90
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=87.92 E-value=0.36 Score=52.97 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=30.9
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
...|.||..|+|.+++|++||.|..||+|+.|+
T Consensus 1077 ~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ie 1109 (1150)
T 3hbl_A 1077 PSHIGAQMPGSVTEVKVSVGETVKANQPLLITE 1109 (1150)
T ss_dssp SSEEECSSSEEEEEECCCTTCEECTTCEEEEEE
T ss_pred CceeecCceEEEEEEEeCCCCEECCCCEEEEEE
Confidence 357999999999999999999999999999986
No 91
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=87.35 E-value=0.42 Score=52.93 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=30.1
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|.||..|+|.+++|++||.|+.||+|+.|+
T Consensus 1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE 1199 (1236)
T 3va7_A 1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIE 1199 (1236)
T ss_dssp EEEECSSCEEEEEESSCTTCEECSSCEEEEEE
T ss_pred cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEE
Confidence 35899999999999999999999999999986
No 92
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=86.89 E-value=0.12 Score=53.29 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=0.0
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|+||..|+|.+++|++||.|+.||+|+.|+
T Consensus 603 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE 634 (675)
T 3u9t_A 603 GGLSAPMNGSIVRVLVEPGQTVEAGATLVVLE 634 (675)
T ss_dssp --------------------------------
T ss_pred CeEECCCCEEEEEEEeCCCCEEcCCCEEEEEE
Confidence 45889999999999999999999999999986
No 93
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=85.95 E-value=0.13 Score=49.60 Aligned_cols=51 Identities=24% Similarity=0.204 Sum_probs=34.8
Q ss_pred CCCCCC--ccCCCEEecCCeEEEEEecceeeEEecCCCeEEE------------------E----------EecCCCCcc
Q 021186 256 PGEPPF--VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIV------------------E----------IIAEDRKPV 305 (316)
Q Consensus 256 p~~~~~--VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~------------------e----------IlVe~Gd~V 305 (316)
.++-.. |+.|+.|+.||+|+ -...|-|+.+|+|. + ++|.+||.|
T Consensus 117 ~ga~l~~~v~~g~~v~~G~vla------k~~aiiaeidG~V~fg~~kr~i~i~~~~g~~~eylip~~~~k~~~v~~Gd~V 190 (352)
T 2xhc_A 117 ESAGIEPGLRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEV 190 (352)
T ss_dssp GGGCBCTTCCTTCEECTTCBSB------SSSSCBCCSCEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEE
T ss_pred CCcEEEEecCCCCEEccCcEEe------cCceEEeccceEEEECCcEEEEEEECCCCCEEEEEEcCCCCcCeeeCCCCEE
Confidence 344456 99999999999887 12333344444443 2 347788999
Q ss_pred CCCCeEE
Q 021186 306 SVDTPLF 312 (316)
Q Consensus 306 ~~GqpL~ 312 (316)
..|++|.
T Consensus 191 ~~G~~l~ 197 (352)
T 2xhc_A 191 KQGEMLA 197 (352)
T ss_dssp CTTCEEE
T ss_pred eCCCCcc
Confidence 9999986
No 94
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=85.30 E-value=0.59 Score=51.32 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=25.4
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..|.||..|+|.+++|++||.|..||+|+.|+
T Consensus 1096 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iE 1127 (1165)
T 2qf7_A 1096 AHVGAPMPGVISRVFVSSGQAVNAGDVLVSIE 1127 (1165)
T ss_dssp TEEECSSCEEEEEECCSSCCCC---CEEEEEE
T ss_pred ceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEE
Confidence 46889999999999999999999999999886
No 95
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=83.14 E-value=1 Score=40.10 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=29.3
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecC--CeEEEEEe
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKG--QVLCIIEA 279 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkG--qvL~iIEa 279 (316)
..|+||+.|++.. .++++|+.|..| ++|+.|..
T Consensus 131 ~~I~AP~~G~V~~-------~~~~~G~~v~~g~~~~l~~i~~ 165 (277)
T 2f1m_A 131 TKVTSPISGRIGK-------SNVTEGALVQNGQATALATVQQ 165 (277)
T ss_dssp TEECCSSCEEECC-------CSSCBTCEECTTCSSCSEEEEE
T ss_pred CEEECCCCeEEEe-------EEcCCCCEEcCCCCceeEEEec
Confidence 5899999999998 799999999999 58888754
No 96
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=78.66 E-value=0.41 Score=47.03 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=0.0
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEec
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEam 280 (316)
..|.||..|++.+ ++|++||.|..||+|+.|+..
T Consensus 46 ~~i~ap~~G~v~~-------i~v~~G~~V~~G~~l~~i~~~ 79 (428)
T 3dva_I 46 VEIPSPVKGKVLE-------ILVPEGTVATVGQTLITLDAP 79 (428)
T ss_dssp -----------------------------------------
T ss_pred EEEecCCCeEEEE-------EEeCCCCEeCCCCEEEEEecC
Confidence 5799999999998 899999999999999999864
No 97
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=75.17 E-value=0.59 Score=42.38 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=0.0
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCE-EecCCeEEEEEe
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDR-VQKGQVLCIIEA 279 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~-VkkGqvL~iIEa 279 (316)
..|.+|..|++.+ +++++||. |..|++|++|+.
T Consensus 47 ~ei~Ap~~G~v~~-------i~v~~G~~~V~~G~~l~~i~~ 80 (229)
T 1zy8_K 47 VTLDASDDGILAK-------IVVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp -----------------------------------------
T ss_pred eEEecCCCeEEEE-------EEecCCCeeecCCCEEEEEec
Confidence 5789999999998 89999997 999999999974
No 98
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=74.19 E-value=1.5 Score=38.94 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=18.3
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
++|++||+|++||.|+.++-
T Consensus 120 ~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 120 RIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp ECSCTTCEECTTCEEEEECH
T ss_pred EEEeCcCEEcCCCEEEEECH
Confidence 78999999999999999864
No 99
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=70.94 E-value=1.7 Score=48.72 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=18.4
Q ss_pred CCCCCCccCCCEEecCCeEEEE
Q 021186 256 PGEPPFVKVGDRVQKGQVLCII 277 (316)
Q Consensus 256 p~~~~~VkvGD~VkkGqvL~iI 277 (316)
.++-..|+.|+.|+.||+|+.|
T Consensus 1103 ~~a~~~v~~g~~v~~g~vlaki 1124 (1407)
T 3lu0_D 1103 GKAIVQLEDGVQISSGDTLARI 1124 (1407)
T ss_dssp TTCCCCCCSSCEECTTCEEECC
T ss_pred CCcEEEecCCCEeccCceEEec
Confidence 4455779999999999999966
No 100
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=68.49 E-value=4.2 Score=38.90 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=29.2
Q ss_pred eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 282 LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 282 ~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
-..-|+||.+|.+. ..++.|+.|+.||+|++|.
T Consensus 289 ~~~~v~A~~~Gl~~-~~v~lGd~V~kG~~la~I~ 321 (368)
T 3fmc_A 289 NYRKFHAPKAGMVE-YLGKVGVPMKATDPLVNLL 321 (368)
T ss_dssp GEEEEECSSCEEEE-ECSCTTCCBCTTCEEEEEE
T ss_pred CcEEEecCCCEEEE-EeCCCCCEeCCCCEEEEEE
Confidence 34568999999887 8899999999999999984
No 101
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=62.34 E-value=8.2 Score=38.62 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=32.1
Q ss_pred EEecceeeEEecCCCeEE-----------------------------EEEecCCCCccCCCCeEEEEc
Q 021186 277 IEAMKLMNEIEADRSGTI-----------------------------VEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 277 IEamK~~~eI~Ap~sGtV-----------------------------~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+-.-+...+|.|+.+|+| ..++++.||.|+.|+||++|.
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~ 433 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVH 433 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEE
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEE
Confidence 344667788889999988 457789999999999999984
No 102
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=60.63 E-value=6.5 Score=36.89 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=28.2
Q ss_pred eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 282 LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 282 ~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
-..-|+||.+|.+. -.++.||.|+.||+|++|.
T Consensus 256 ~~~~v~A~~~Gl~~-~~v~~Gd~V~~G~~la~I~ 288 (331)
T 3na6_A 256 GDCYLFSEHDGLFE-IMIDLGEPVQEGDLVARVW 288 (331)
T ss_dssp SCCCEECSSCEEEE-ESSCTTCEECTTCEEEEEE
T ss_pred CcEEEeCCCCeEEE-EcCCCCCEEcCCCEEEEEE
Confidence 34568999999766 5799999999999999985
No 103
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=59.43 E-value=8.6 Score=36.24 Aligned_cols=34 Identities=18% Similarity=0.010 Sum_probs=28.3
Q ss_pred ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 281 KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 281 K~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+-..-++|+.+|. .+..++.|+.|..||+|+.|.
T Consensus 265 ~~~~~v~A~~~G~-~~~~~~~g~~V~~G~~La~i~ 298 (354)
T 3cdx_A 265 EADAYVMAPRTGL-FEPTHYVGEEVRTGETAGWIH 298 (354)
T ss_dssp CGGGEEECSSCEE-EEESCCTTCEECTTSEEEEEE
T ss_pred CCcEEEECCCCEE-EEEeCCCCCEeCCCCEEEEEE
Confidence 4455689999995 557789999999999999874
No 104
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=58.25 E-value=6.4 Score=34.23 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=18.7
Q ss_pred CCCccCCCEEecCCeEEEEEe
Q 021186 259 PPFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 259 ~~~VkvGD~VkkGqvL~iIEa 279 (316)
...|++||+|++||+|+.+-.
T Consensus 84 ~i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 84 QIQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp SCCCCTTCEECTTCEEEEECS
T ss_pred ccccCCCCEEcCCCEEEeecC
Confidence 367999999999999999974
No 105
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=57.07 E-value=11 Score=37.13 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=30.4
Q ss_pred EecceeeEEecCCCeEEE-------------------------------EEecCCCCccCCCCeEEEEc
Q 021186 278 EAMKLMNEIEADRSGTIV-------------------------------EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 278 EamK~~~eI~Ap~sGtV~-------------------------------eIlVe~Gd~V~~GqpL~~Ie 315 (316)
-.-+...+|.|+.+|+|. .++.+.||.|+.|+||++|.
T Consensus 330 ~~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~ 398 (433)
T 1brw_A 330 PKAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIH 398 (433)
T ss_dssp CCCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEE
T ss_pred CCCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEE
Confidence 345667778888888874 57788999999999999984
No 106
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=55.84 E-value=12 Score=37.02 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=28.8
Q ss_pred cceeeEEecCCCeEEE-------------------------------EEecCCCCccCCCCeEEEEc
Q 021186 280 MKLMNEIEADRSGTIV-------------------------------EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 280 mK~~~eI~Ap~sGtV~-------------------------------eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.+...+|.|+.+|+|. .++++.||.|+.|+||++|.
T Consensus 335 a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 335 AQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp CSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEE
T ss_pred CCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEEe
Confidence 4567777888888774 56778999999999999983
No 107
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=51.83 E-value=14 Score=36.54 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=29.2
Q ss_pred ecceeeEEecCCCeEEE-------------------------------EEecCCCCccCCCCeEEEEc
Q 021186 279 AMKLMNEIEADRSGTIV-------------------------------EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 279 amK~~~eI~Ap~sGtV~-------------------------------eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.-+ ..+|.|+.+|+|. .++.+.||.|+.|+||++|.
T Consensus 324 ~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~ 390 (423)
T 2dsj_A 324 LAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVY 390 (423)
T ss_dssp CCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEE
T ss_pred CCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEE
Confidence 345 7778888888874 57788899999999999984
No 108
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=51.37 E-value=2.5 Score=39.90 Aligned_cols=36 Identities=11% Similarity=-0.087 Sum_probs=25.7
Q ss_pred CCccCCCEEecCCeEEEEEec-----ceeeEEecCCCeEEE
Q 021186 260 PFVKVGDRVQKGQVLCIIEAM-----KLMNEIEADRSGTIV 295 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEam-----K~~~eI~Ap~sGtV~ 295 (316)
..++.|+.|++||+|+.+-.. .....|.+|.+|+|.
T Consensus 277 ~~~~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~ 317 (341)
T 1yw4_A 277 DSVENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKP 317 (341)
T ss_dssp TTCCBTEECCSSCCCC--------CCSSCCEEESCCTTCCS
T ss_pred ecCCCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCcee
Confidence 357899999999999998654 345579999999874
No 109
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=48.28 E-value=28 Score=30.13 Aligned_cols=54 Identities=19% Similarity=0.015 Sum_probs=38.1
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
..|.|+..|++... . |. ..+|+-..-...+.+- +.++.|+.||.|..||.|..+
T Consensus 49 tpV~A~~~G~V~~~---------~-------G~-~V~I~H~~g~~t~Y~H----L~~i~V~~G~~V~~Gq~IG~v 102 (182)
T 3it5_A 49 YSVVAAHAGTVRVL---------S-------RC-QVRVTHPSGWATNYYH----MDQIQVSNGQQVSADTKLGVY 102 (182)
T ss_dssp CEEECSSSEEEEEE---------E-------TT-EEEEECTTSEEEEEES----EESCCCCTTCEECTTCEEEEE
T ss_pred CEEEeccCEEEEEE---------C-------Ce-EEEEEECCcEEEEEEc----CCccccCCCCEEcCCCEEEee
Confidence 47999999998872 1 43 3455555544444444 346789999999999999876
No 110
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=47.34 E-value=10 Score=37.54 Aligned_cols=39 Identities=26% Similarity=0.293 Sum_probs=30.8
Q ss_pred EEecceeeEEecCCCeEEE-------------------------------EEecCCCCccCCCCeEEEEc
Q 021186 277 IEAMKLMNEIEADRSGTIV-------------------------------EIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 277 IEamK~~~eI~Ap~sGtV~-------------------------------eIlVe~Gd~V~~GqpL~~Ie 315 (316)
+-.-+...+|.|+.+|+|. .++.+.||.|+.|+||++|.
T Consensus 334 ~~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~ 403 (440)
T 2tpt_A 334 LPTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIH 403 (440)
T ss_dssp SCCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEE
T ss_pred CCCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEe
Confidence 3345677788888888884 46778899999999999984
No 111
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=46.70 E-value=9.3 Score=35.97 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=18.3
Q ss_pred CCCccCCCEEecCCeEEEEEe
Q 021186 259 PPFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 259 ~~~VkvGD~VkkGqvL~iIEa 279 (316)
...|++||+|++||+|+.+-.
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~G~ 270 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHTGI 270 (334)
T ss_dssp SCCCCTTCEECTTSEEEECBC
T ss_pred cccCCCcCEECCCCEEEeecC
Confidence 467999999999999998753
No 112
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=45.58 E-value=8.9 Score=35.05 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=18.6
Q ss_pred CCccCCCEEecCCeEEEEEec
Q 021186 260 PFVKVGDRVQKGQVLCIIEAM 280 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEam 280 (316)
+.|++||.|++||+|+.+-..
T Consensus 135 i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 135 VSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp ESCCTTCEECTTCEEEECBCC
T ss_pred cccCCCCEECCCCEEEEeCCc
Confidence 679999999999999998754
No 113
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=45.06 E-value=32 Score=35.50 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=31.4
Q ss_pred CccCCCEEecCCeEEEEEecce-eeEEec--CCCeEEEEEecCCCCc
Q 021186 261 FVKVGDRVQKGQVLCIIEAMKL-MNEIEA--DRSGTIVEIIAEDRKP 304 (316)
Q Consensus 261 ~VkvGD~VkkGqvL~iIEamK~-~~eI~A--p~sGtV~eIlVe~Gd~ 304 (316)
.+++||.|..|++++.+.-... ...|.. ...|+|+.| ..|+.
T Consensus 130 ~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g~~ 174 (600)
T 3vr4_A 130 TIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESGSF 174 (600)
T ss_dssp CSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCEEE
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCCcc
Confidence 4899999999999999975543 355533 368999987 66653
No 114
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=43.09 E-value=13 Score=31.10 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=26.2
Q ss_pred EEecCCCeEEEEEec-CCCCccCCCCeEEEEc
Q 021186 285 EIEADRSGTIVEIIA-EDRKPVSVDTPLFVIE 315 (316)
Q Consensus 285 eI~Ap~sGtV~eIlV-e~Gd~V~~GqpL~~Ie 315 (316)
.+.++.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 38 ~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VE 69 (136)
T 1zko_A 38 NHAQEQLGDVVYVDLPEVGREVKKGEVVASIE 69 (136)
T ss_dssp HHHHHHHCSEEEEECCCTTCEECTTCEEEEEE
T ss_pred hhhcccCCCcEEEEecCCCCEEeCCCEEEEEE
Confidence 455677788888877 9999999999999986
No 115
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=41.36 E-value=11 Score=34.98 Aligned_cols=20 Identities=40% Similarity=0.498 Sum_probs=17.6
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
..|++||.|++||+|+.+-.
T Consensus 232 i~V~~G~~V~~Gq~IG~vG~ 251 (282)
T 2hsi_A 232 IDVKLGQQVPRGGVLGKVGA 251 (282)
T ss_dssp ECSCTTCEECTTCEEEECCC
T ss_pred cccCCcCEECCCCEEEEECC
Confidence 57899999999999998854
No 116
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=40.95 E-value=12 Score=34.08 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=17.5
Q ss_pred CccCCCEEecCCeEEEEEe
Q 021186 261 FVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 261 ~VkvGD~VkkGqvL~iIEa 279 (316)
.|++||.|++||+|+.+-.
T Consensus 183 ~V~~G~~V~~Gq~IG~vG~ 201 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYMGD 201 (252)
T ss_dssp SCCTTCEECTTCEEEECBC
T ss_pred cCCCCCEECCCCEEEEECC
Confidence 7999999999999999864
No 117
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=40.78 E-value=24 Score=34.83 Aligned_cols=42 Identities=31% Similarity=0.419 Sum_probs=31.4
Q ss_pred CCccCCcCeEEEcCC------------------------CCCCCCCccCCCEEecCCeEEEEEecc
Q 021186 240 PPLKCPMAGTFYRSP------------------------APGEPPFVKVGDRVQKGQVLCIIEAMK 281 (316)
Q Consensus 240 ~~V~APmvGtf~~sp------------------------~p~~~~~VkvGD~VkkGqvL~iIEamK 281 (316)
..|+|+..|.+.... .-+...++++||+|++||+|+.|-+.+
T Consensus 336 ~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 336 STVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp EEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred EEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCC
Confidence 468888888875421 112227899999999999999998764
No 118
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=40.53 E-value=24 Score=34.73 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.9
Q ss_pred CCccCCCEEecCCeEEEEEecc
Q 021186 260 PFVKVGDRVQKGQVLCIIEAMK 281 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEamK 281 (316)
.++++||+|++||+|+.|-+..
T Consensus 372 ~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 372 LLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp ESCCTTCEECTTSEEEEEEECS
T ss_pred eeccCCCEeCCCCeEEEEEeCC
Confidence 7899999999999999998764
No 119
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=40.36 E-value=14 Score=30.69 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=26.7
Q ss_pred eEEecCCCeEEEEEec-CCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIA-EDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlV-e~Gd~V~~GqpL~~Ie 315 (316)
.++..+.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 28 td~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vE 60 (131)
T 1hpc_A 28 TDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVE 60 (131)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECBTSEEEEEE
T ss_pred ehhhcccCCCceEEEecCCCCEEeCCCEEEEEE
Confidence 3345666788998888 9999999999999986
No 120
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=39.67 E-value=24 Score=32.72 Aligned_cols=21 Identities=14% Similarity=0.003 Sum_probs=18.2
Q ss_pred EEEEecCCCCccCCCCeEEEE
Q 021186 294 IVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 294 V~eIlVe~Gd~V~~GqpL~~I 314 (316)
+.++.|+.||.|..||.|..+
T Consensus 229 L~~i~V~~G~~V~~Gq~IG~v 249 (282)
T 2hsi_A 229 LSKIDVKLGQQVPRGGVLGKV 249 (282)
T ss_dssp ESEECSCTTCEECTTCEEEEC
T ss_pred CCccccCCcCEECCCCEEEEE
Confidence 346889999999999999875
No 121
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=39.02 E-value=28 Score=31.74 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=36.5
Q ss_pred CccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 021186 241 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 241 ~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~I 314 (316)
.|.|+..|+|... .-.. .-|- +.+|+-..-...+.+- +.++.|+.|+.|..||.|..+
T Consensus 95 pV~A~~~G~V~~~-------g~~~----~~G~-~ViI~Hg~G~~t~Y~H----L~~i~Vk~Gd~V~~Gq~IG~v 152 (245)
T 3tuf_B 95 DVSASLSGTVVKA-------EKDP----VLGY-VVEVEHADGLSTVYQS----LSEVSVEQGDKVKQNQVIGKS 152 (245)
T ss_dssp EEECSSCEEEEEE-------EEET----TTEE-EEEEECSTTEEEEEEE----ESEESCCTTCEECTTCEEEEC
T ss_pred eEEeCcCeEEEEE-------EecC----CCce-EEEEEeCCCEEEEEec----CCccccCCCCEECCCCEEEEe
Confidence 5888888887651 1000 1122 3455555444444433 446889999999999999876
No 122
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=38.89 E-value=13 Score=35.09 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=17.6
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
..|++||.|++||+|+.+-.
T Consensus 239 i~Vk~Gq~V~~GqvIG~vG~ 258 (291)
T 1qwy_A 239 LTVSAGDKVKAGDQIAYSGS 258 (291)
T ss_dssp ECCCTTCEECTTCEEEECCC
T ss_pred cccCCcCEECCCCEEEEECC
Confidence 57999999999999998854
No 123
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=38.33 E-value=16 Score=31.91 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.5
Q ss_pred CCCCCCCccCCCEEecCCeEEEEE
Q 021186 255 APGEPPFVKVGDRVQKGQVLCIIE 278 (316)
Q Consensus 255 ~p~~~~~VkvGD~VkkGqvL~iIE 278 (316)
++++-..|+.|+.|++||+|+.|-
T Consensus 163 P~ga~i~v~dG~~V~~GdvLArip 186 (190)
T 2auk_A 163 PGKAIVQLEDGVQISSGDTLARIP 186 (190)
T ss_dssp CTTCEESSCTTCEECTTCEEEEEE
T ss_pred CCCCEEEEcCCCEEcCCCEEEEcc
Confidence 556667899999999999999885
No 124
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=37.77 E-value=28 Score=34.76 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.7
Q ss_pred CCCCccCCCEEecCCeEEEEEecc
Q 021186 258 EPPFVKVGDRVQKGQVLCIIEAMK 281 (316)
Q Consensus 258 ~~~~VkvGD~VkkGqvL~iIEamK 281 (316)
...++++||+|++||+|+.|-+.+
T Consensus 413 i~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 413 AELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp EEECSCTTCEECTTCEEEEEEESS
T ss_pred eEEEccCCCEECCCCeEEEEEcCC
Confidence 337899999999999999998754
No 125
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=37.57 E-value=26 Score=32.43 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=27.4
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 283 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 283 ~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
..-++|+..|.+. -.++.|+.|..|++|+.|.
T Consensus 257 ~~~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~ 288 (332)
T 2qj8_A 257 SDQLKSPSPGIFE-PRCSVMDEVEQGDVVGVLH 288 (332)
T ss_dssp GGEEECSSSEEEE-ECSCTTCEECTTCEEEEEE
T ss_pred ceEEeCCCCeEEE-EeCCCCCEeCCCCEEEEEE
Confidence 3457899999876 7899999999999999873
No 126
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=36.40 E-value=16 Score=30.09 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=31.8
Q ss_pred cccceEeeecc-------cccccccc--------------chhhhhcchhhhcccccCCCceeEEE
Q 021186 63 KCATVVKSQLN-------EVSFFQWF--------------SFEDIFSNFRSFLDSLLGTPVEFKVA 107 (316)
Q Consensus 63 ~~~~~~~~~~~-------~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (316)
+.+-.|||+|+ |+|=|.|= ++++|....+.+|-.|-..++.+|-.
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~Yk 83 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYR 83 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEE
Confidence 34678999995 99999993 77778777777776666555544443
No 127
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=36.36 E-value=25 Score=34.75 Aligned_cols=39 Identities=28% Similarity=0.300 Sum_probs=29.4
Q ss_pred CCccCCcCeEEEcCC------------------------CCCCCCCccCCCEEecCCeEEEEE
Q 021186 240 PPLKCPMAGTFYRSP------------------------APGEPPFVKVGDRVQKGQVLCIIE 278 (316)
Q Consensus 240 ~~V~APmvGtf~~sp------------------------~p~~~~~VkvGD~VkkGqvL~iIE 278 (316)
..|+|+..|.+.... .-+...++++||+|++||+|+.|-
T Consensus 339 ~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 339 IEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp EEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEE
T ss_pred EEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEEe
Confidence 478888888876422 122227899999999999999997
No 128
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=35.54 E-value=20 Score=29.48 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=25.9
Q ss_pred eEEecCCCeEEEEEec-CCCCccCCCCeEEEEc
Q 021186 284 NEIEADRSGTIVEIIA-EDRKPVSVDTPLFVIE 315 (316)
Q Consensus 284 ~eI~Ap~sGtV~eIlV-e~Gd~V~~GqpL~~Ie 315 (316)
.++..+.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 28 t~~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vE 60 (128)
T 1onl_A 28 TDYAQDALGDVVYVELPEVGRVVEKGEAVAVVE 60 (128)
T ss_dssp CHHHHHHHCSEEEEECBCTTCEECTTCEEEEEE
T ss_pred ehHHhhcCCCceEEEecCCCCEEeCCCEEEEEE
Confidence 3344566688888877 9999999999999986
No 129
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=35.49 E-value=29 Score=32.74 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=17.5
Q ss_pred EEEecCCCCccCCCCeEEEE
Q 021186 295 VEIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 295 ~eIlVe~Gd~V~~GqpL~~I 314 (316)
.++.|+.||.|..||+|..+
T Consensus 282 ~~~~v~~G~~V~~G~~Ig~~ 301 (361)
T 2gu1_A 282 DKILVKKGQLVKRGQKIALA 301 (361)
T ss_dssp SEECCCTTCEECTTCEEEEC
T ss_pred CccccCCcCEECCCCEEEEE
Confidence 45789999999999999876
No 130
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=35.48 E-value=13 Score=36.81 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=31.3
Q ss_pred CCccCCcCeEEEcCC------------------------CCCCCCCccCCCEEecCCeEEEEEecc
Q 021186 240 PPLKCPMAGTFYRSP------------------------APGEPPFVKVGDRVQKGQVLCIIEAMK 281 (316)
Q Consensus 240 ~~V~APmvGtf~~sp------------------------~p~~~~~VkvGD~VkkGqvL~iIEamK 281 (316)
..|+|+..|.+.... .-+...++++||+|++||+|+.|-+.+
T Consensus 341 ~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 341 KAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp EEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred EEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCC
Confidence 468888888875421 122237899999999999999998754
No 131
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=34.78 E-value=21 Score=29.36 Aligned_cols=31 Identities=26% Similarity=0.144 Sum_probs=25.4
Q ss_pred EEecCCCeEEEEEec-CCCCccCCCCeEEEEc
Q 021186 285 EIEADRSGTIVEIIA-EDRKPVSVDTPLFVIE 315 (316)
Q Consensus 285 eI~Ap~sGtV~eIlV-e~Gd~V~~GqpL~~Ie 315 (316)
++..+.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 30 d~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vE 61 (128)
T 3a7l_A 30 EHAQELLGDMVFVDLPEVGATVSAGDDCAVAE 61 (128)
T ss_dssp HHHHHHHCSEEEEECCCTTCEECTTCEEEEEE
T ss_pred hHHhccCCceEEEEecCCCCEEeCCCEEEEEE
Confidence 344566687888877 9999999999999986
No 132
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=34.72 E-value=16 Score=34.54 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=17.8
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
..|++||.|++||+|+.+-.
T Consensus 284 ~~v~~G~~V~~G~~Ig~~G~ 303 (361)
T 2gu1_A 284 ILVKKGQLVKRGQKIALAGA 303 (361)
T ss_dssp ECCCTTCEECTTCEEEECCC
T ss_pred cccCCcCEECCCCEEEEECC
Confidence 56999999999999998864
No 133
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=34.04 E-value=18 Score=29.08 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=31.3
Q ss_pred cceEeeecc-------ccccccc--------------cchhhhhcchhhhcccccCCCceeEEE
Q 021186 65 ATVVKSQLN-------EVSFFQW--------------FSFEDIFSNFRSFLDSLLGTPVEFKVA 107 (316)
Q Consensus 65 ~~~~~~~~~-------~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (316)
+-.|||+|+ |+|=|.+ .++++|....+.+|-.|-...+.+|-.
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~ 68 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYR 68 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEE
Confidence 567999994 9999998 368888887777777666555555443
No 134
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=33.93 E-value=32 Score=30.11 Aligned_cols=41 Identities=22% Similarity=0.065 Sum_probs=31.7
Q ss_pred CCCEEecCCeEEEEEecceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 021186 264 VGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 315 (316)
Q Consensus 264 vGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~~Ie 315 (316)
.|-.+++|+-||.+++. |..+-+.+..|+.|..|+.|+.|.
T Consensus 92 ~~~~lkkGt~L~lvpae-----------G~~V~~i~~~G~rV~kgd~lA~i~ 132 (169)
T 3d4r_A 92 TLTYLKAGTKLISVPAE-----------GYKVYPIMDFGFRVLKGYRLATLE 132 (169)
T ss_dssp EEEEECTTCBCEEEEEC-----------SSEEEECCCCSEEECTTCEEEEEE
T ss_pred EEEEEcCCCEEEEEEeC-----------ceEEEEEcCcCcEeccCCeEEEEE
Confidence 34458888888888764 555567788999999999999874
No 135
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=33.80 E-value=14 Score=28.76 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=16.9
Q ss_pred CCCCCCCccCCCEEecCCeEE
Q 021186 255 APGEPPFVKVGDRVQKGQVLC 275 (316)
Q Consensus 255 ~p~~~~~VkvGD~VkkGqvL~ 275 (316)
+.+....|++||.|++||.|.
T Consensus 62 p~~~~l~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 62 PKWRQLNVFEGERVERGDVIS 82 (84)
T ss_dssp CTTSCCSSCTTEEECBSCSSB
T ss_pred CCCCceEeCCCCEECCCCCcc
Confidence 455668899999999999763
No 136
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=32.91 E-value=22 Score=33.08 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=18.7
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|+++.|+.|++||+|+.|+.
T Consensus 76 ~~~~dG~~v~~g~~v~~i~G 95 (286)
T 1x1o_A 76 PLVAEGARVAEGTEVARVRG 95 (286)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCCccCCCEEEEEEE
Confidence 78999999999999999984
No 137
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=32.29 E-value=21 Score=33.26 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=18.7
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|+++.|+.|++||+|+.|+.
T Consensus 75 ~~~~dG~~v~~g~~v~~i~G 94 (285)
T 1o4u_A 75 FNVEDGEYLEGTGVIGEIEG 94 (285)
T ss_dssp ESCCTTCEEESCEEEEEEEE
T ss_pred EEcCCCCCcCCCCEEEEEEE
Confidence 78999999999999999984
No 138
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=30.95 E-value=22 Score=33.00 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=18.7
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|+++.|+.|++|++|+.|+.
T Consensus 75 ~~~~dG~~v~~g~~v~~i~G 94 (284)
T 1qpo_A 75 DRVEDGARVPPGEALMTLEA 94 (284)
T ss_dssp EECCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCEecCCcEEEEEEE
Confidence 78999999999999999984
No 139
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=30.26 E-value=26 Score=32.87 Aligned_cols=20 Identities=5% Similarity=0.036 Sum_probs=18.8
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|++++|+.|++|++|+.|+.
T Consensus 79 ~~~~dG~~v~~g~~v~~i~G 98 (287)
T 3tqv_A 79 WLYSDAQKVPANARIFELKG 98 (287)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEeCCCCEeeCCCEEEEEEE
Confidence 79999999999999999984
No 140
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=28.72 E-value=28 Score=32.93 Aligned_cols=20 Identities=35% Similarity=0.190 Sum_probs=18.9
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|+++.|+.|++|++|+.|+.
T Consensus 88 ~~~~dG~~v~~g~~v~~i~G 107 (300)
T 3l0g_A 88 IHKKDGDITGKNSTLVSGEA 107 (300)
T ss_dssp ECCCTTCEECSSCEEEEEEE
T ss_pred EEeCCCCEeeCCCEEEEEEE
Confidence 89999999999999999984
No 141
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=27.38 E-value=51 Score=29.94 Aligned_cols=59 Identities=19% Similarity=-0.008 Sum_probs=37.1
Q ss_pred CCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecceeeEEecCCCeEEEEE-ecCCCCccCCCCeEEEE
Q 021186 240 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEI-IAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 240 ~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK~~~eI~Ap~sGtV~eI-lVe~Gd~V~~GqpL~~I 314 (316)
..|.|+..|++... .-. ..+--..+|+...-...+.+- +.++ .|+.||.|..||+|..+
T Consensus 140 ~pV~A~~~G~V~~~-------g~~-----~~~G~~V~I~H~~G~~t~Y~H----L~~~~~V~~G~~V~~Gq~IG~v 199 (252)
T 3nyy_A 140 YPVVSMTDGVVTEK-------GWL-----EKGGWRIGITAPTGAYFYYAH----LDSYAELEKGDPVKAGDLLGYM 199 (252)
T ss_dssp SEEECSSCEEEEEE-------EEE-----TTTEEEEEEECTTSCEEEEEE----ESEECSCCTTCEECTTCEEEEC
T ss_pred ceEEeccCEEEEEE-------Eec-----CCCCCEEEEEeCCcEEEEEee----CCCCCcCCCCCEECCCCEEEEE
Confidence 36999999998762 100 111223455554433334443 3445 89999999999999876
No 142
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=26.16 E-value=35 Score=32.10 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=18.9
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|++++|+.|++|++|+.|+.
T Consensus 90 ~~~~dG~~v~~g~~l~~v~G 109 (298)
T 3gnn_A 90 WRHREGDRMSADSTVCELRG 109 (298)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCEecCCCEEEEEEe
Confidence 78999999999999999985
No 143
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=25.43 E-value=37 Score=32.31 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=18.9
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|++++|+.|++|++|+.|+.
T Consensus 112 ~~~~dG~~v~~g~~l~~v~G 131 (320)
T 3paj_A 112 WHVQDGDTLTPNQTLCTLTG 131 (320)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEeCCCCEecCCCEEEEEEe
Confidence 79999999999999999985
No 144
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=25.40 E-value=34 Score=31.27 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=18.5
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|++++|+.|.+|++|+.|+.
T Consensus 62 ~~~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 62 QTIKDKERFKPKDALMEIRG 81 (273)
T ss_dssp EECCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCCcCCCCEEEEEEe
Confidence 57999999999999999985
No 145
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=25.09 E-value=38 Score=31.56 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=18.8
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|++++|+.|.+|++|+.|+.
T Consensus 89 ~~~~dG~~v~~g~~~~~v~G 108 (296)
T 1qap_A 89 WHVDDGDAIHANQTVFELQG 108 (296)
T ss_dssp ESCCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 78999999999999999985
No 146
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B*
Probab=24.46 E-value=82 Score=29.06 Aligned_cols=59 Identities=17% Similarity=0.295 Sum_probs=37.9
Q ss_pred CCCCCccCCcCeEEEcCCCCCCCCCccCCCEEecCCeEEEEEecc----eeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 021186 237 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK----LMNEIEADRSGTIVEIIAEDRKPVSVDTPLF 312 (316)
Q Consensus 237 ~~~~~V~APmvGtf~~sp~p~~~~~VkvGD~VkkGqvL~iIEamK----~~~eI~Ap~sGtV~eIlVe~Gd~V~~GqpL~ 312 (316)
++-....|+..|++.. +..+ ++|.....|++.. +...|.+. -+++|.+||.|..||+|-
T Consensus 166 SNN~v~~as~~G~I~~---------I~~~---ekgg~~vtI~~~~~G~~v~~~iP~G-----peLiV~~G~~v~~~qpLT 228 (252)
T 1hcz_A 166 SNNTVYNATAGGIISK---------ILRK---EKGGYEITIVDASNERQVIDIIPRG-----LELLVSEGESIKLDQPLT 228 (252)
T ss_dssp CSSSCCBCSSCEEEEE---------EEEC---TTSCEEEEEEETTTTEEEEEEECTT-----CCBCCCTTCEECTTCBSB
T ss_pred ccCceecccCCcEEEE---------EEEc---CCCCEEEEEecCCCCCEEEEecCCC-----CeEEEecCCEEecCCccc
Confidence 4445789999999987 2222 3466566666543 22223332 257899999999999983
No 147
>2qzb_A Uncharacterized protein YFEY; structural genomics, unknown function, PSI-2, protein struct initiative; 2.10A {Escherichia coli}
Probab=24.35 E-value=47 Score=28.99 Aligned_cols=42 Identities=29% Similarity=0.387 Sum_probs=34.8
Q ss_pred ccCCCEEecCCeEEEEEecc---eeeEEecCCCeEEEEEecCCCCc
Q 021186 262 VKVGDRVQKGQVLCIIEAMK---LMNEIEADRSGTIVEIIAEDRKP 304 (316)
Q Consensus 262 VkvGD~VkkGqvL~iIEamK---~~~eI~Ap~sGtV~eIlVe~Gd~ 304 (316)
++.|-+-..|+++-++++|| +.+.|.- -.|+|.+|.|.+++.
T Consensus 45 lrsGm~t~~G~~v~~~qA~~~d~v~lvi~G-~~g~V~rI~V~d~~i 89 (166)
T 2qzb_A 45 LRSGMKTANGNVVRFFEVMKGDNVAMVING-DQGTISRIDVLDSDI 89 (166)
T ss_dssp EEEEEEEETTEEEEEEEEEETTEEEEEEEC---CBCCEEEECCTTC
T ss_pred EeeceecCCCCEEEeeeeecCCcEEEEEEC-CCCcEEEEEEeCCCC
Confidence 58899999999999998876 6677777 889999999999886
No 148
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=22.52 E-value=40 Score=31.31 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=18.6
Q ss_pred CCccCCCEEecCCeEEEEEe
Q 021186 260 PFVKVGDRVQKGQVLCIIEA 279 (316)
Q Consensus 260 ~~VkvGD~VkkGqvL~iIEa 279 (316)
|++++|+.|.+|++|+.|+.
T Consensus 75 ~~~~dG~~v~~g~~l~~v~G 94 (299)
T 2jbm_A 75 WFLPEGSKLVPVARVAEVRG 94 (299)
T ss_dssp ESSCTTCEECSSEEEEEEEE
T ss_pred EEcCCCCCCCCCCEEEEEEE
Confidence 58999999999999999985
No 149
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=21.73 E-value=78 Score=29.60 Aligned_cols=19 Identities=5% Similarity=-0.141 Sum_probs=16.6
Q ss_pred EEecCCCCccCCCCeEEEE
Q 021186 296 EIIAEDRKPVSVDTPLFVI 314 (316)
Q Consensus 296 eIlVe~Gd~V~~GqpL~~I 314 (316)
++.|+.||.|..||.|..+
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~ 268 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHT 268 (334)
T ss_dssp SCCCCTTCEECTTSEEEEC
T ss_pred cccCCCcCEECCCCEEEee
Confidence 4579999999999999875
No 150
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=21.65 E-value=1.3e+02 Score=30.96 Aligned_cols=37 Identities=32% Similarity=0.521 Sum_probs=28.1
Q ss_pred CccCCCEEecCCeEEEEEecceeeEEe--cCCCeEEEEE
Q 021186 261 FVKVGDRVQKGQVLCIIEAMKLMNEIE--ADRSGTIVEI 297 (316)
Q Consensus 261 ~VkvGD~VkkGqvL~iIEamK~~~eI~--Ap~sGtV~eI 297 (316)
.+++||.|..|++++.+.-......|. ....|+|.++
T Consensus 122 ~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~~i 160 (578)
T 3gqb_A 122 MVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEV 160 (578)
T ss_dssp CCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEEEE
T ss_pred ccccCccccccceeeeecccccceecccCCCcCceeEEe
Confidence 589999999999999987554445543 3367888876
Done!