Query 021187
Match_columns 316
No_of_seqs 254 out of 1002
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 14:01:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 2.8E-58 9.6E-63 407.0 16.1 151 7-160 13-170 (174)
2 1ut7_A No apical meristem prot 100.0 1.4E-57 4.9E-62 401.7 15.5 152 7-161 15-168 (171)
3 1ldd_A APC2WHB, anaphase promo 31.3 27 0.00091 26.1 2.3 27 9-36 36-63 (74)
4 2crr_A Stromal membrane-associ 16.3 1.6E+02 0.0053 24.4 4.4 32 6-38 98-129 (141)
5 2k2d_A Ring finger and CHY zin 14.3 37 0.0013 25.5 0.0 18 274-291 13-30 (79)
6 1cmb_A Met APO-repressor; DNA- 13.0 1.7E+02 0.0059 22.7 3.5 40 16-59 50-89 (104)
7 1r7l_A Phage protein; structur 12.9 75 0.0026 25.4 1.4 15 273-287 8-22 (110)
8 3dz1_A Dihydrodipicolinate syn 11.2 1E+02 0.0035 28.3 2.0 16 9-26 109-124 (313)
9 3nr5_A MAF1, repressor of RNA 10.9 68 0.0023 27.4 0.6 12 41-52 119-130 (164)
10 1f6k_A N-acetylneuraminate lya 10.7 1E+02 0.0034 28.0 1.8 17 9-26 106-122 (293)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=2.8e-58 Score=407.01 Aligned_cols=151 Identities=52% Similarity=1.080 Sum_probs=133.7
Q ss_pred CCCCCCceeCCChHHHHHHHHHHHHhcCCCCCCceecccCCCCCCchhhhhhhcCcccCCeEEEEeccCCCCCCCCcccc
Q 021187 7 SYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNR 86 (316)
Q Consensus 7 ~~LPpGfRF~PTDeELV~~YL~~Ki~g~~l~~~~I~dvDvy~~ePwdL~~~~~~g~~~~~ewYFFs~r~~k~~tG~R~nR 86 (316)
..|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+||+.+..| +++||||+++++||++|.|+||
T Consensus 13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g---~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG---AREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSC---SSEEEEEEECCC-----CCSCE
T ss_pred cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccC---CceEEEEeccccccCCCCCcee
Confidence 5699999999999999999999999999999999999999999999999987554 5899999999999999999999
Q ss_pred cccCceeeecCCCeeeecCCeeEEEEEEEEEeecCCCCCCCcCeEEEEEEeCCCCCCC-------CCCCceEEEEEEEeC
Q 021187 87 ATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENGP-------PQEEGWVVCRAFKKR 159 (316)
Q Consensus 87 at~~G~Wk~tG~~k~I~~~g~~IG~KKtLvFy~gr~p~g~KT~WvMhEY~L~~~~~~~-------~~~~~~VLCrIf~K~ 159 (316)
+|++||||+||++++|..+|.+||+||+|+||.|++|+|.||+|+||||+|....... ...++|||||||+|+
T Consensus 90 ~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~ 169 (174)
T 3ulx_A 90 AAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169 (174)
T ss_dssp EETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESC
T ss_pred ecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999998764321 236799999999987
Q ss_pred C
Q 021187 160 A 160 (316)
Q Consensus 160 ~ 160 (316)
+
T Consensus 170 ~ 170 (174)
T 3ulx_A 170 N 170 (174)
T ss_dssp C
T ss_pred C
Confidence 5
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.4e-57 Score=401.66 Aligned_cols=152 Identities=49% Similarity=1.012 Sum_probs=130.6
Q ss_pred CCCCCCceeCCChHHHHHHHHHHHHhcCCCCCCceecccCCCCCCchhhhhhhcCcccCCeEEEEeccCCCCCCCCcccc
Q 021187 7 SYVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNR 86 (316)
Q Consensus 7 ~~LPpGfRF~PTDeELV~~YL~~Ki~g~~l~~~~I~dvDvy~~ePwdL~~~~~~g~~~~~ewYFFs~r~~k~~tG~R~nR 86 (316)
..|||||||||||||||.|||++|+.+.+++.++|+++|||++|||+|++.+..| +++||||+++++||++|.|+||
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g---~~ewyFFs~r~~k~~~g~R~~R 91 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEWYFFSPRDRKYPNGSRPNR 91 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC---SSEEEEEEECCC-------CCE
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcC---CccEEEEeccccccCCCCcccc
Confidence 5799999999999999999999999999999999999999999999999987544 6899999999999999999999
Q ss_pred cccCceeeecCCCeeeecCCeeEEEEEEEEEeecCCCCCCCcCeEEEEEEeCCCCCC--CCCCCceEEEEEEEeCCC
Q 021187 87 ATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENG--PPQEEGWVVCRAFKKRAT 161 (316)
Q Consensus 87 at~~G~Wk~tG~~k~I~~~g~~IG~KKtLvFy~gr~p~g~KT~WvMhEY~L~~~~~~--~~~~~~~VLCrIf~K~~~ 161 (316)
+|++||||+||++++|..++.+||+||+|+||+|++|+|.||+|+||||+|...... ....++|||||||+|+.+
T Consensus 92 ~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 92 VAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp EETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred cCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 999999999999999999999999999999999999999999999999999876421 123689999999999864
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=31.31 E-value=27 Score=26.14 Aligned_cols=27 Identities=26% Similarity=0.540 Sum_probs=22.4
Q ss_pred CCCCceeCC-ChHHHHHHHHHHHHhcCCC
Q 021187 9 VPPGFRFHP-TDEELVGYYLRKKVASQKI 36 (316)
Q Consensus 9 LPpGfRF~P-TDeELV~~YL~~Ki~g~~l 36 (316)
.|.|+.|.. |++||-.+ |..|+..+.+
T Consensus 36 ~~~~~~~~~it~~eL~~f-L~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEGY-LNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHHH-HHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHHH-HHHHHhCCeE
Confidence 477999998 99998885 9999987654
No 4
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=16.29 E-value=1.6e+02 Score=24.37 Aligned_cols=32 Identities=28% Similarity=0.583 Sum_probs=24.0
Q ss_pred cCCCCCCceeCCChHHHHHHHHHHHHhcCCCCC
Q 021187 6 ESYVPPGFRFHPTDEELVGYYLRKKVASQKIDL 38 (316)
Q Consensus 6 ~~~LPpGfRF~PTDeELV~~YL~~Ki~g~~l~~ 38 (316)
+..||++++ .|+..+.++.|++.|...+.+-.
T Consensus 98 e~~lp~~~~-~P~~~~~~e~fIr~KY~~k~f~~ 129 (141)
T 2crr_A 98 EANLPENFR-RPQTDQAVEFFIRDKYEKKKYYD 129 (141)
T ss_dssp GGSCCTTCC-CCCSHHHHHHHHHHHHTSCTTCC
T ss_pred HhcCCcccC-CCCchHHHHHHHHHHHhcCcccC
Confidence 567888875 47777788899999987766543
No 5
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=14.34 E-value=37 Score=25.52 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=0.0
Q ss_pred cChHHHHHHHHhhcCccc
Q 021187 274 TDWRALDKFVASQLSQED 291 (316)
Q Consensus 274 ~dw~~ld~~vasql~~~~ 291 (316)
.-|+.||..||+|-=+++
T Consensus 13 ~~~~~lD~~ia~~pmP~~ 30 (79)
T 2k2d_A 13 RYWRQLDDEVAQTPMPSE 30 (79)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHhCCCCHH
Confidence 349999999999875443
No 6
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=13.02 E-value=1.7e+02 Score=22.73 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=30.8
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCceecccCCCCCCchhhhhhh
Q 021187 16 HPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQERCR 59 (316)
Q Consensus 16 ~PTDeELV~~YL~~Ki~g~~l~~~~I~dvDvy~~ePwdL~~~~~ 59 (316)
|-|--||++.-...-..|+|+|. +.|+-+..|.++|...+
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~ak 89 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAAK 89 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHHH
Confidence 56788888876677788999985 46788888888887654
No 7
>1r7l_A Phage protein; structural genomics, two layers alpha-beta sandwich, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Bacillus cereus} SCOP: d.277.1.1
Probab=12.95 E-value=75 Score=25.41 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=13.2
Q ss_pred CcChHHHHHHHHhhc
Q 021187 273 VTDWRALDKFVASQL 287 (316)
Q Consensus 273 ~~dw~~ld~~vasql 287 (316)
..+=|.+|||+|+|+
T Consensus 8 ~m~~Re~drLIAeKv 22 (110)
T 1r7l_A 8 AMKPRDINKLIASKI 22 (110)
T ss_dssp SCCHHHHHHHHHHHT
T ss_pred cCChHHHHHHHHHHh
Confidence 456799999999999
No 8
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=11.18 E-value=1e+02 Score=28.32 Aligned_cols=16 Identities=38% Similarity=0.733 Sum_probs=13.3
Q ss_pred CCCCceeCCChHHHHHHH
Q 021187 9 VPPGFRFHPTDEELVGYY 26 (316)
Q Consensus 9 LPpGfRF~PTDeELV~~Y 26 (316)
+||- |.||+++|+.||
T Consensus 109 ~~P~--~~~s~~~l~~~f 124 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYF 124 (313)
T ss_dssp CCCT--TCCSHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHH
Confidence 6774 569999999997
No 9
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=10.89 E-value=68 Score=27.44 Aligned_cols=12 Identities=25% Similarity=0.598 Sum_probs=10.3
Q ss_pred eecccCCCCCCc
Q 021187 41 IRDIDLYRIEPW 52 (316)
Q Consensus 41 I~dvDvy~~ePw 52 (316)
+.++|||.+.|.
T Consensus 119 l~dC~IYsY~Pd 130 (164)
T 3nr5_A 119 LAECDIYSYNPD 130 (164)
T ss_dssp GGGCEEEEECCC
T ss_pred ccCCeEEEEcCC
Confidence 667899999996
No 10
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=10.72 E-value=1e+02 Score=27.99 Aligned_cols=17 Identities=29% Similarity=0.555 Sum_probs=14.1
Q ss_pred CCCCceeCCChHHHHHHH
Q 021187 9 VPPGFRFHPTDEELVGYY 26 (316)
Q Consensus 9 LPpGfRF~PTDeELV~~Y 26 (316)
+||-| |.||+++|+.||
T Consensus 106 ~~P~y-~~~~~~~l~~~f 122 (293)
T 1f6k_A 106 VTPFY-YKFSFPEIKHYY 122 (293)
T ss_dssp ECCCS-SCCCHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHH
Confidence 56654 889999999997
Done!