BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021188
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 74/107 (69%), Gaps = 3/107 (2%)
Query: 25 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKPDIKRGN 83
EL +GPWT EED + ++ ++G RW+ +AK LK R GK CR RW N+L P++K+ +
Sbjct: 24 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAK--HLKGRIGKQCRERWHNHLNPEVKKTS 81
Query: 84 LTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQA 130
T +E +I + H + GNRW++IA+ LPGRTDN +KN+W + ++++
Sbjct: 82 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Query: 25 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNL 84
EL +GPWT EED + + ++G RW+++AK R GK CR RW N+L P++K+ +
Sbjct: 55 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 113
Query: 85 TPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQA 130
T +E +I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 72/107 (67%), Gaps = 3/107 (2%)
Query: 25 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKPDIKRGN 83
+L +GPWT EED + + ++G +W ++AK LK R GK CR RW N+L P++K+ +
Sbjct: 4 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSS 61
Query: 84 LTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQA 130
T +E +I E H GNRW++IA+ LPGRTDN +KN+W + ++++
Sbjct: 62 WTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 99.0 bits (245), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/106 (45%), Positives = 74/106 (69%), Gaps = 3/106 (2%)
Query: 25 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKPDIKRGN 83
EL +GPWT EED + + ++G RW+++AK LK R GK CR RW N+L P++K+ +
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPEVKKTS 58
Query: 84 LTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129
T +E +I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 59 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
Score = 28.9 bits (63), Expect = 3.6, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 78 DIKRGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132
++ +G T +E +++L K+G RWS IA+ L GR + + W + + ++
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 56
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 97.4 bits (241), Expect = 8e-21, Method: Composition-based stats.
Identities = 47/105 (44%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Query: 26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKPDIKRGNL 84
L +GPWT EED + + ++G RW+++AK LK R GK CR RW N+L P++K+ +
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPEVKKTSW 59
Query: 85 TPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129
T +E +I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 60 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
Score = 28.9 bits (63), Expect = 3.7, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 81 RGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132
+G T +E +++L K+G RWS IA+ L GR + + W + + ++
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 56
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQ 87
+GP+T ED L+ Y+ ++G W + R+ K CR RW N+L P + + TP+
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 88 EQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129
E I + K G++WS IA+ +PGRTDN IKN W + + K+
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTP 86
++ +T EED +L + QHG W M+A R + CR RW NYL P I T
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSD-WKMIA-ATFPNRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 87 QEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRT 124
+E L+++ ++G +W+ IA+ PGRTD IKN W T
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 32 TLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFL 91
T EED L + ++G W +++ + R + CR RW NY+ P ++ +P+E L
Sbjct: 5 TEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 92 ILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132
+ + ++++G +W+KI++ L R+DN I+N W + +A+
Sbjct: 64 LDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWL 72
LR PW+ EED LL ++G +WN ++K R+ + R RW+
Sbjct: 51 LRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLK-NRSDNNIRNRWM 95
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 39/53 (73%)
Query: 78 DIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQA 130
++K+ + T +E ++ + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 38/51 (74%)
Query: 79 IKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129
+K+ + T +E +I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKPD 78
L +GPWT EED L + ++G RW+++AK LK R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPE 52
Score = 27.7 bits (60), Expect = 8.1, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 81 RGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129
+G T +E +++L K+G RWS IA+ L GR + + W + +
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 48.9 bits (115), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKPD 78
L +GPWT EED + + ++G RW+++AK LK R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPE 52
Score = 28.1 bits (61), Expect = 6.2, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 81 RGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129
+G T +E +++L K+G RWS IA+ L GR + + W + +
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 48.9 bits (115), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKPD 78
L +GPWT EED + + ++G RW+++AK LK R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPE 52
Score = 29.6 bits (65), Expect = 2.3, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 81 RGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129
+G T +E ++EL K+G RWS IA+ L GR + + W + +
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 31 WTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKR 81
W ED +L + ++G+ +W+ +A +++ K C+ RW +L P IK+
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKK 61
>pdb|2AJE|A Chain A, Solution Structure Of The Arabidopsis Thaliana Telomeric
Repeat-Binding Protein Dna Binding Domain
Length = 105
Score = 34.7 bits (78), Expect = 0.074, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 21 EDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCA---GLKRTGKSCRLRWLNY--- 74
ED Q R P+++ E L + + G GRW V CA RT + +W
Sbjct: 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65
Query: 75 --LKPDIKRGNLTPQEQF-LILELHSKW 99
+ P +RG PQE +L H W
Sbjct: 66 AKISPQQRRGEPVPQELLNRVLNAHGYW 93
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 31 WTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYL 75
WT EED L + Q G+ W +A RT + C+ RWL L
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLASHF-PNRTDQQCQYRWLRVL 54
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 30.8 bits (68), Expect = 0.95, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 31 WTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPD 78
WT EED L + Q+G W ++A RT C+ RW L P+
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 30.8 bits (68), Expect = 0.95, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 31 WTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPD 78
WT EED L + Q+G W ++A RT C+ RW L P+
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|2JUH|A Chain A, Solution Structure Of Dna Binding Domain Of Ngtrf1
Length = 121
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 15 ECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCA---GLKRTGKSCRLRW 71
+ SE Q+ +RR P+++ E L + G GRW V A RT + +W
Sbjct: 5 KSKRSELSQRRIRR-PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKW 63
Query: 72 LNY-----LKPDIKRGNLTPQEQF-LILELHSKWGNRWSK 105
+ P +RG PQ+ +L H+ W + K
Sbjct: 64 KTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQGK 103
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 29.6 bits (65), Expect = 2.1, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 85 TPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQAR 131
T +E+ L + +K+G RW+KI++ + RT ++K+Y R + + +
Sbjct: 13 TIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 59
>pdb|2LLK|A Chain A, Solution Nmr Structure Of The N-Terminal Myb-Like 1 Domain
Of The Human Cyclin-D-Binding Transcription Factor 1
(Hdmp1), Northeast Structural Genomics Consortium (Nesg)
Target Id Hr8011a
Length = 73
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 82 GNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWR 123
G TP+E + EL K GN W+ I L GR+ + +K+ R
Sbjct: 24 GKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 27.7 bits (60), Expect = 9.3, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 101 NRWSKIAQCLPGRTDNEIKNYW 122
+RW K+AQ + GRT E+K ++
Sbjct: 44 DRWKKVAQYVKGRTPEEVKKHY 65
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAK-CAGLKRTGKSCRLRW 71
++ WT+EE + + ++GEG W ++K + RT + RW
Sbjct: 13 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,969,125
Number of Sequences: 62578
Number of extensions: 348173
Number of successful extensions: 736
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 46
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)