Query 021188
Match_columns 316
No_of_seqs 288 out of 1504
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 14:02:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h8a_C AMV V-MYB, MYB transfor 100.0 1.1E-35 3.7E-40 248.6 7.9 125 4-129 1-127 (128)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 4.3E-34 1.5E-38 230.9 9.2 104 25-129 1-104 (105)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 9.6E-34 3.3E-38 230.1 8.9 104 28-132 1-104 (107)
4 3zqc_A MYB3; transcription-DNA 100.0 2.7E-33 9.4E-38 235.1 8.5 107 28-135 2-108 (131)
5 3osg_A MYB21; transcription-DN 100.0 7.6E-33 2.6E-37 231.0 10.0 104 23-128 6-109 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 4.4E-33 1.5E-37 240.7 6.5 126 3-129 31-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 5.5E-32 1.9E-36 233.8 4.6 125 25-150 3-129 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 4.2E-23 1.4E-27 172.2 4.3 96 54-150 1-98 (128)
9 2dim_A Cell division cycle 5-l 99.9 1.4E-22 4.9E-27 152.3 2.8 65 24-89 5-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 5.7E-19 1.9E-23 160.2 6.7 105 24-129 4-200 (246)
11 2juh_A Telomere binding protei 99.7 9.3E-19 3.2E-23 144.6 2.5 82 23-105 12-103 (121)
12 2d9a_A B-MYB, MYB-related prot 99.7 3.7E-18 1.3E-22 124.3 3.9 56 24-80 4-59 (60)
13 1gvd_A MYB proto-oncogene prot 99.7 4.5E-18 1.5E-22 120.4 3.8 52 26-78 1-52 (52)
14 2llk_A Cyclin-D-binding MYB-li 99.7 9.2E-18 3.1E-22 127.3 4.9 58 67-125 9-66 (73)
15 2roh_A RTBP1, telomere binding 99.7 7.9E-18 2.7E-22 139.2 4.7 79 23-102 26-114 (122)
16 1guu_A C-MYB, MYB proto-oncoge 99.7 5.9E-18 2E-22 119.7 3.0 52 26-78 1-52 (52)
17 2din_A Cell division cycle 5-l 99.7 5.2E-17 1.8E-21 120.5 7.0 61 74-135 2-62 (66)
18 2cu7_A KIAA1915 protein; nucle 99.7 6.1E-17 2.1E-21 122.2 6.2 64 75-139 3-66 (72)
19 1ity_A TRF1; helix-turn-helix, 99.7 3E-17 1E-21 122.9 3.7 62 24-85 6-68 (69)
20 2dim_A Cell division cycle 5-l 99.7 3.2E-17 1.1E-21 123.0 3.6 65 76-140 4-69 (70)
21 3sjm_A Telomeric repeat-bindin 99.6 9.6E-17 3.3E-21 118.7 2.8 56 25-80 8-64 (64)
22 1x41_A Transcriptional adaptor 99.6 1.3E-16 4.3E-21 116.4 3.3 54 24-78 4-57 (60)
23 3zqc_A MYB3; transcription-DNA 99.6 1.2E-16 4.1E-21 133.7 1.5 102 3-110 27-130 (131)
24 2d9a_A B-MYB, MYB-related prot 99.6 5.5E-16 1.9E-20 112.8 4.7 54 76-129 3-57 (60)
25 1guu_A C-MYB, MYB proto-oncoge 99.6 7.7E-16 2.6E-20 108.8 5.0 50 79-128 1-51 (52)
26 1ity_A TRF1; helix-turn-helix, 99.6 1.4E-15 4.7E-20 113.8 5.5 62 74-135 3-67 (69)
27 1gvd_A MYB proto-oncogene prot 99.6 1.2E-15 4.1E-20 107.9 4.5 50 79-128 1-51 (52)
28 2din_A Cell division cycle 5-l 99.6 1.7E-16 5.8E-21 117.7 -0.0 56 24-82 5-60 (66)
29 1w0t_A Telomeric repeat bindin 99.6 6E-16 2.1E-20 110.0 2.8 50 27-76 1-51 (53)
30 2elk_A SPCC24B10.08C protein; 99.6 9.1E-16 3.1E-20 111.2 2.8 52 24-75 5-56 (58)
31 2yum_A ZZZ3 protein, zinc fing 99.6 5.5E-16 1.9E-20 117.7 1.2 60 23-83 3-67 (75)
32 1w0t_A Telomeric repeat bindin 99.5 5.6E-15 1.9E-19 104.9 5.8 49 80-128 1-52 (53)
33 1x41_A Transcriptional adaptor 99.5 4.9E-15 1.7E-19 108.0 5.6 52 76-127 3-55 (60)
34 2cu7_A KIAA1915 protein; nucle 99.5 1.4E-15 4.7E-20 114.7 1.3 56 24-81 5-60 (72)
35 3osg_A MYB21; transcription-DN 99.5 5.5E-15 1.9E-19 122.8 4.7 75 76-150 6-81 (126)
36 2yum_A ZZZ3 protein, zinc fing 99.5 6.7E-15 2.3E-19 111.6 3.9 58 76-133 3-66 (75)
37 1gv2_A C-MYB, MYB proto-oncoge 99.5 7E-15 2.4E-19 118.1 3.9 73 78-150 1-75 (105)
38 3sjm_A Telomeric repeat-bindin 99.5 2.1E-14 7.1E-19 106.1 6.0 51 79-129 9-62 (64)
39 2elk_A SPCC24B10.08C protein; 99.5 2.4E-14 8.2E-19 103.6 5.7 50 77-126 5-56 (58)
40 2aje_A Telomere repeat-binding 99.5 1.8E-14 6.2E-19 116.3 4.5 78 23-101 8-95 (105)
41 2ckx_A NGTRF1, telomere bindin 99.5 3.1E-14 1.1E-18 110.4 4.6 69 29-98 1-79 (83)
42 2k9n_A MYB24; R2R3 domain, DNA 99.5 3.1E-14 1.1E-18 115.0 4.2 70 81-150 1-72 (107)
43 2llk_A Cyclin-D-binding MYB-li 99.4 2.9E-14 1E-18 108.0 3.5 54 24-81 19-72 (73)
44 2ltp_A Nuclear receptor corepr 99.2 6.8E-15 2.3E-19 115.5 0.0 57 73-129 8-64 (89)
45 2yus_A SWI/SNF-related matrix- 99.4 1.1E-13 3.8E-18 106.3 4.3 49 24-74 14-62 (79)
46 2juh_A Telomere binding protei 99.4 3.4E-13 1.2E-17 111.3 4.4 77 75-151 11-98 (121)
47 2cqr_A RSGI RUH-043, DNAJ homo 99.4 5.6E-13 1.9E-17 100.9 5.2 51 77-127 14-68 (73)
48 2ltp_A Nuclear receptor corepr 99.0 7.1E-14 2.4E-18 109.7 0.0 53 23-77 11-63 (89)
49 2aje_A Telomere repeat-binding 99.3 1.7E-12 5.7E-17 104.8 7.3 75 77-151 9-94 (105)
50 2yus_A SWI/SNF-related matrix- 99.3 8.4E-13 2.9E-17 101.4 4.3 48 78-125 15-62 (79)
51 2cqr_A RSGI RUH-043, DNAJ homo 99.3 3E-13 1E-17 102.4 1.3 54 22-76 12-68 (73)
52 2ckx_A NGTRF1, telomere bindin 99.3 2.1E-12 7.3E-17 100.0 6.0 49 82-130 1-54 (83)
53 2roh_A RTBP1, telomere binding 99.3 2.2E-12 7.4E-17 106.7 5.1 74 77-150 27-111 (122)
54 1x58_A Hypothetical protein 49 99.2 1.1E-11 3.7E-16 90.5 5.9 49 80-128 7-58 (62)
55 1ign_A Protein (RAP1); RAP1,ye 99.2 2.9E-12 9.9E-17 116.4 2.5 55 77-131 4-64 (246)
56 2cjj_A Radialis; plant develop 99.2 3.7E-11 1.3E-15 94.9 6.8 50 80-129 7-60 (93)
57 2cjj_A Radialis; plant develop 99.0 4E-11 1.4E-15 94.7 1.6 48 27-75 7-57 (93)
58 3hm5_A DNA methyltransferase 1 98.9 1.5E-09 5.1E-14 85.5 6.6 67 64-134 17-88 (93)
59 2eqr_A N-COR1, N-COR, nuclear 98.9 1.5E-09 5.1E-14 79.1 5.8 47 80-126 11-57 (61)
60 1x58_A Hypothetical protein 49 98.9 6.1E-10 2.1E-14 81.2 2.7 50 26-77 6-58 (62)
61 2eqr_A N-COR1, N-COR, nuclear 98.8 2.5E-09 8.5E-14 77.9 2.9 50 24-75 8-57 (61)
62 2cqq_A RSGI RUH-037, DNAJ homo 98.8 3.6E-09 1.2E-13 79.7 3.6 50 78-128 5-58 (72)
63 2iw5_B Protein corest, REST co 98.7 9E-09 3.1E-13 92.8 4.7 48 80-127 132-179 (235)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.6 8.5E-09 2.9E-13 77.7 1.4 50 25-76 5-57 (72)
65 2xag_B REST corepressor 1; ami 98.5 4.9E-08 1.7E-12 97.0 3.7 43 82-124 381-423 (482)
66 1fex_A TRF2-interacting telome 98.5 3.2E-08 1.1E-12 71.7 1.7 48 28-76 2-58 (59)
67 1wgx_A KIAA1903 protein; MYB D 98.5 4.8E-08 1.7E-12 73.6 2.3 48 28-76 8-58 (73)
68 1wgx_A KIAA1903 protein; MYB D 98.4 1.3E-07 4.5E-12 71.2 3.7 46 81-126 8-57 (73)
69 2iw5_B Protein corest, REST co 98.4 1.1E-07 3.8E-12 85.7 2.6 49 26-76 131-179 (235)
70 1fex_A TRF2-interacting telome 98.4 2.2E-07 7.4E-12 67.3 3.6 47 81-127 2-58 (59)
71 1ofc_X ISWI protein; nuclear p 98.1 5.6E-06 1.9E-10 78.0 7.6 103 29-132 111-279 (304)
72 4eef_G F-HB80.4, designed hema 98.1 7E-07 2.4E-11 67.0 0.8 44 28-72 20-66 (74)
73 2yqk_A Arginine-glutamic acid 98.1 7.7E-06 2.6E-10 59.7 6.2 48 77-124 5-53 (63)
74 1ug2_A 2610100B20RIK gene prod 98.0 8.4E-06 2.9E-10 63.4 6.5 49 83-131 35-86 (95)
75 4eef_G F-HB80.4, designed hema 98.0 2.3E-06 7.8E-11 64.2 2.2 43 81-123 20-66 (74)
76 2lr8_A CAsp8-associated protei 97.1 1.7E-06 6E-11 63.8 0.0 46 83-129 16-64 (70)
77 4iej_A DNA methyltransferase 1 97.8 3.3E-05 1.1E-09 60.6 6.7 61 69-133 22-87 (93)
78 2yqk_A Arginine-glutamic acid 97.8 1E-05 3.5E-10 59.0 3.2 49 23-73 4-53 (63)
79 4a69_C Nuclear receptor corepr 97.6 8.5E-05 2.9E-09 58.4 5.7 44 81-124 43-86 (94)
80 3hm5_A DNA methyltransferase 1 97.6 2.4E-05 8.2E-10 61.5 2.3 51 25-76 27-81 (93)
81 2crg_A Metastasis associated p 97.5 0.00014 4.8E-09 54.1 5.8 44 81-124 8-52 (70)
82 2xag_B REST corepressor 1; ami 97.5 3E-05 1E-09 77.1 2.7 47 27-75 379-425 (482)
83 4a69_C Nuclear receptor corepr 97.2 0.00015 5E-09 57.1 2.7 44 27-72 42-85 (94)
84 2ebi_A DNA binding protein GT- 97.2 4.6E-05 1.6E-09 58.5 -0.5 50 26-75 2-63 (86)
85 2crg_A Metastasis associated p 97.2 0.00018 6.1E-09 53.5 2.7 45 27-73 7-52 (70)
86 4b4c_A Chromodomain-helicase-D 97.1 0.00098 3.4E-08 58.8 7.6 105 24-129 3-197 (211)
87 2ebi_A DNA binding protein GT- 97.0 0.00035 1.2E-08 53.5 3.0 50 80-129 3-66 (86)
88 2y9y_A Imitation switch protei 97.0 0.0017 5.9E-08 62.6 8.0 106 29-134 124-297 (374)
89 1ug2_A 2610100B20RIK gene prod 96.4 0.0013 4.6E-08 51.1 2.5 51 23-74 28-80 (95)
90 2lr8_A CAsp8-associated protei 95.4 0.00049 1.7E-08 50.7 0.0 48 27-76 13-62 (70)
91 4iej_A DNA methyltransferase 1 95.3 0.0081 2.8E-07 47.0 2.4 51 24-75 26-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 95.2 0.047 1.6E-06 39.8 6.2 48 80-127 6-58 (64)
93 2xb0_X Chromo domain-containin 92.6 0.064 2.2E-06 49.6 3.1 29 29-57 169-197 (270)
94 1ofc_X ISWI protein; nuclear p 91.9 0.26 8.9E-06 46.2 6.4 48 81-128 110-158 (304)
95 4b4c_A Chromodomain-helicase-D 90.1 0.52 1.8E-05 41.1 6.3 50 80-129 6-60 (211)
96 1irz_A ARR10-B; helix-turn-hel 89.1 0.26 8.8E-06 35.8 2.9 48 25-73 4-55 (64)
97 2xb0_X Chromo domain-containin 86.7 0.39 1.3E-05 44.3 3.3 27 82-108 169-196 (270)
98 2yqf_A Ankyrin-1; death domain 77.1 14 0.00049 28.8 8.7 77 85-162 14-101 (111)
99 1wxp_A THO complex subunit 1; 74.4 18 0.00063 28.1 8.7 73 89-162 18-100 (110)
100 2rq5_A Protein jumonji; develo 69.4 1.9 6.4E-05 35.0 1.7 57 38-97 46-113 (121)
101 1c20_A DEAD ringer protein; DN 67.9 12 0.00039 30.2 6.2 45 89-133 54-111 (128)
102 2y9y_A Imitation switch protei 67.7 3.4 0.00012 39.7 3.4 32 27-58 227-261 (374)
103 2o8x_A Probable RNA polymerase 60.8 12 0.00041 25.6 4.5 43 87-130 18-60 (70)
104 2kk0_A AT-rich interactive dom 57.9 19 0.00064 29.7 5.9 44 90-133 67-123 (145)
105 1ku3_A Sigma factor SIGA; heli 56.2 16 0.00055 25.7 4.6 45 84-130 11-59 (73)
106 2li6_A SWI/SNF chromatin-remod 54.9 7.7 0.00026 30.8 2.8 41 91-131 53-101 (116)
107 2lm1_A Lysine-specific demethy 54.3 23 0.00078 27.3 5.5 42 90-131 47-100 (107)
108 2li6_A SWI/SNF chromatin-remod 53.1 3.6 0.00012 32.7 0.6 39 38-77 53-98 (116)
109 2of5_H Leucine-rich repeat and 50.7 64 0.0022 25.3 7.8 72 89-161 13-96 (118)
110 2jrz_A Histone demethylase jar 50.6 20 0.00067 28.4 4.7 42 90-131 43-96 (117)
111 1kkx_A Transcription regulator 50.4 15 0.00051 29.5 3.9 42 91-132 52-101 (123)
112 2p7v_B Sigma-70, RNA polymeras 50.3 17 0.00058 25.1 3.8 41 88-129 9-53 (68)
113 2eqy_A RBP2 like, jumonji, at 49.6 20 0.0007 28.5 4.6 42 90-131 45-98 (122)
114 3hug_A RNA polymerase sigma fa 49.2 28 0.00096 25.5 5.1 42 87-129 40-81 (92)
115 2ib1_A Death domain containing 48.7 25 0.00086 26.6 4.8 76 86-163 5-86 (91)
116 2cxy_A BAF250B subunit, HBAF25 47.9 25 0.00087 28.0 5.0 42 90-131 54-107 (125)
117 2jrz_A Histone demethylase jar 47.3 4.9 0.00017 32.0 0.6 40 38-77 44-93 (117)
118 1ig6_A MRF-2, modulator recogn 47.1 5.8 0.0002 30.9 0.9 40 38-77 37-87 (107)
119 3cz6_A DNA-binding protein RAP 43.7 18 0.00062 30.8 3.5 25 24-48 110-142 (168)
120 3ezq_B Protein FADD; apoptosis 41.4 1.3E+02 0.0044 23.9 8.2 66 94-160 11-87 (122)
121 1fad_A Protein (FADD protein); 41.1 38 0.0013 25.4 4.8 70 90-160 15-95 (99)
122 1c20_A DEAD ringer protein; DN 40.4 6.8 0.00023 31.6 0.4 40 38-77 56-106 (128)
123 2q1z_A RPOE, ECF SIGE; ECF sig 40.1 31 0.0011 27.9 4.5 34 97-131 148-181 (184)
124 2rq5_A Protein jumonji; develo 40.1 31 0.0011 27.7 4.3 42 90-131 45-99 (121)
125 1or7_A Sigma-24, RNA polymeras 38.8 53 0.0018 26.6 5.8 34 97-131 153-186 (194)
126 2eqy_A RBP2 like, jumonji, at 38.2 8 0.00027 31.0 0.5 40 38-77 46-95 (122)
127 2of5_A Death domain-containing 38.1 1E+02 0.0035 24.2 7.0 69 79-151 17-96 (114)
128 2o71_A Death domain-containing 37.5 1E+02 0.0035 24.1 7.0 66 81-150 19-95 (115)
129 1x3u_A Transcriptional regulat 35.9 73 0.0025 22.0 5.4 41 84-127 17-57 (79)
130 2cxy_A BAF250B subunit, HBAF25 35.1 13 0.00045 29.8 1.3 40 38-77 55-104 (125)
131 3ulq_B Transcriptional regulat 34.9 69 0.0023 23.7 5.3 45 81-128 27-71 (90)
132 2jxj_A Histone demethylase jar 34.7 19 0.00066 27.2 2.2 40 91-130 40-91 (96)
133 1tty_A Sigma-A, RNA polymerase 33.7 55 0.0019 23.7 4.6 43 85-129 20-66 (87)
134 3i4p_A Transcriptional regulat 33.0 47 0.0016 27.0 4.5 43 87-130 3-46 (162)
135 1xsv_A Hypothetical UPF0122 pr 31.4 97 0.0033 23.8 5.9 41 88-129 29-69 (113)
136 1fse_A GERE; helix-turn-helix 31.2 74 0.0025 21.6 4.7 44 82-128 10-53 (74)
137 1k78_A Paired box protein PAX5 31.1 1.3E+02 0.0046 23.4 6.9 69 28-100 30-107 (149)
138 1je8_A Nitrate/nitrite respons 30.8 72 0.0024 22.9 4.7 43 83-128 21-63 (82)
139 2k27_A Paired box protein PAX- 30.6 2E+02 0.0069 22.7 8.0 67 28-99 23-99 (159)
140 1u78_A TC3 transposase, transp 30.5 1.8E+02 0.0061 22.1 8.7 87 28-120 4-98 (141)
141 3c57_A Two component transcrip 30.4 74 0.0025 23.5 4.8 44 83-129 27-70 (95)
142 2jpc_A SSRB; DNA binding prote 29.2 96 0.0033 20.3 4.9 38 89-128 3-40 (61)
143 3i4p_A Transcriptional regulat 28.4 14 0.00047 30.4 0.3 42 34-77 3-44 (162)
144 1rp3_A RNA polymerase sigma fa 28.0 98 0.0034 25.7 5.8 41 89-130 192-232 (239)
145 2gf5_A FADD protein; death dom 27.9 2.4E+02 0.0082 23.7 8.3 72 88-160 97-179 (191)
146 2kk0_A AT-rich interactive dom 27.8 33 0.0011 28.2 2.6 40 38-77 68-118 (145)
147 2p1m_A SKP1-like protein 1A; F 27.7 28 0.00097 28.8 2.2 35 52-94 119-153 (160)
148 3mzy_A RNA polymerase sigma-H 26.5 89 0.003 24.2 5.0 32 97-129 121-152 (164)
149 2dbb_A Putative HTH-type trans 25.7 1.2E+02 0.004 23.9 5.6 43 87-130 9-52 (151)
150 1ntc_A Protein (nitrogen regul 24.5 1.1E+02 0.0038 22.4 4.9 34 86-120 50-83 (91)
151 3e7l_A Transcriptional regulat 24.1 88 0.003 21.3 4.0 43 86-137 18-60 (63)
152 2rnj_A Response regulator prot 23.7 93 0.0032 22.5 4.3 42 83-127 29-70 (91)
153 3cz6_A DNA-binding protein RAP 23.3 51 0.0017 28.0 2.9 17 77-93 110-126 (168)
154 1p4w_A RCSB; solution structur 21.4 1.6E+02 0.0054 22.1 5.3 59 81-146 32-90 (99)
155 1tc3_C Protein (TC3 transposas 21.2 1.4E+02 0.0049 17.8 4.9 37 83-121 5-41 (51)
156 1s7o_A Hypothetical UPF0122 pr 20.5 1.6E+02 0.0055 22.6 5.2 44 84-129 23-66 (113)
No 1
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1.1e-35 Score=248.56 Aligned_cols=125 Identities=39% Similarity=0.764 Sum_probs=102.4
Q ss_pred hhhhhhhcCccccCCChhh--hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCcc
Q 021188 4 MRAARAAGTKRECNSSEED--QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKR 81 (316)
Q Consensus 4 ~~~~~~~~~k~~~~~~~~~--~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkk 81 (316)
|++.+++++..+|..+|.. .|++++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhccccccc
Confidence 5678899999999999975 6899999999999999999999999888999999998 999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188 82 GNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 82 g~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~ 129 (316)
++||+|||++|++++.+||++|..||+.|||||+++|++||+.++++.
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999988764
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=4.3e-34 Score=230.87 Aligned_cols=104 Identities=44% Similarity=0.883 Sum_probs=99.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHHHHHHHHHHHhcCCChh
Q 021188 25 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWS 104 (316)
Q Consensus 25 ~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~ 104 (316)
++++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 48999999999999999999999888999999998 99999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188 105 KIAQCLPGRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 105 ~IA~~lpgRT~~q~knRW~~~l~k~ 129 (316)
.||+.|||||+++|++||+.++++.
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999988765
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=9.6e-34 Score=230.07 Aligned_cols=104 Identities=29% Similarity=0.631 Sum_probs=100.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHHHHHHHHHHHhcCCChhhhh
Q 021188 28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIA 107 (316)
Q Consensus 28 kg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA 107 (316)
||+||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHh
Q 021188 108 QCLPGRTDNEIKNYWRTRVQKQARQ 132 (316)
Q Consensus 108 ~~lpgRT~~q~knRW~~~l~k~~r~ 132 (316)
+.|||||+++|++||+.++++..++
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999887654
No 4
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.98 E-value=2.7e-33 Score=235.08 Aligned_cols=107 Identities=36% Similarity=0.714 Sum_probs=102.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHHHHHHHHHHHhcCCChhhhh
Q 021188 28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIA 107 (316)
Q Consensus 28 kg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA 107 (316)
||+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||++|..||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 021188 108 QCLPGRTDNEIKNYWRTRVQKQARQLNI 135 (316)
Q Consensus 108 ~~lpgRT~~q~knRW~~~l~k~~r~~~~ 135 (316)
+.|||||+++|++||+.++++.+.....
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~ 108 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSN 108 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999887665543
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.98 E-value=7.6e-33 Score=231.04 Aligned_cols=104 Identities=38% Similarity=0.710 Sum_probs=100.1
Q ss_pred hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHHHHHHHHHHHhcCCC
Q 021188 23 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 102 (316)
Q Consensus 23 ~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~ 102 (316)
.+..++|+||+|||++|+++|.+||. +|..||+.|+ +|++.|||+||.++|+|.+++++||+|||++|+++|.+||.+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~ 83 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ 83 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 36789999999999999999999998 9999999998 999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021188 103 WSKIAQCLPGRTDNEIKNYWRTRVQK 128 (316)
Q Consensus 103 W~~IA~~lpgRT~~q~knRW~~~l~k 128 (316)
|..||+.|||||+++|++||..++++
T Consensus 84 W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 84 WAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999988865
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=4.4e-33 Score=240.70 Aligned_cols=126 Identities=38% Similarity=0.753 Sum_probs=109.0
Q ss_pred hhhhhhhhcCccccCCChhh--hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCc
Q 021188 3 TMRAARAAGTKRECNSSEED--QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIK 80 (316)
Q Consensus 3 ~~~~~~~~~~k~~~~~~~~~--~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lk 80 (316)
+|+..+++++.++|..+|.. .|.+++|+||+|||++|+++|.+||..+|..||+.|+ +|++.||++||.++|+|.++
T Consensus 31 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~ 109 (159)
T 1h89_C 31 VIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVK 109 (159)
T ss_dssp ------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSC
T ss_pred HHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCcccc
Confidence 46777889999999999866 6889999999999999999999999878999999998 99999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188 81 RGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 81 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~ 129 (316)
+++||+|||.+|++++.+||++|..||+.|||||+++|++||+.+++++
T Consensus 110 ~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 110 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred ccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999988754
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=5.5e-32 Score=233.79 Aligned_cols=125 Identities=27% Similarity=0.586 Sum_probs=77.9
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHHHHHHHHHHHhcCC-Ch
Q 021188 25 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGN-RW 103 (316)
Q Consensus 25 ~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~-~W 103 (316)
.+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999995 79
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCchHHH-HHHhhhc
Q 021188 104 SKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETFF-EAVRCYW 150 (316)
Q Consensus 104 ~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~~e~~~~-~~i~~~~ 150 (316)
..||..|||||+.||++||.++|.+.+++..++.+|+.++ ..+..|.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999888844 4444443
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.87 E-value=4.2e-23 Score=172.17 Aligned_cols=96 Identities=24% Similarity=0.536 Sum_probs=67.9
Q ss_pred hhcccCCccccccccchhccccCCCCccCCCCHHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 021188 54 VAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGN-RWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132 (316)
Q Consensus 54 IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~ 132 (316)
||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|.+.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788998 99999999999999999999999999999999999999995 7999999999999999999999999999999
Q ss_pred cCCCCCchHHH-HHHhhhc
Q 021188 133 LNIESNSETFF-EAVRCYW 150 (316)
Q Consensus 133 ~~~~~~e~~~~-~~i~~~~ 150 (316)
+.++.+|+.++ ..+..|.
T Consensus 80 ~~WT~eEd~~L~~~~~~~G 98 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLG 98 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHC
Confidence 99999988844 4444443
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-22 Score=152.30 Aligned_cols=65 Identities=25% Similarity=0.619 Sum_probs=63.3
Q ss_pred cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHHH
Q 021188 24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQ 89 (316)
Q Consensus 24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED 89 (316)
+.+++|+||+|||++|+++|.+||.++|..||+.|+ +|+++|||+||.++|+|.+++++||+|||
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 789999999999999999999999779999999999 99999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.76 E-value=5.7e-19 Score=160.23 Aligned_cols=105 Identities=18% Similarity=0.346 Sum_probs=91.8
Q ss_pred cCCccCCCCHHHHHHHHHHHHHhCCCC-----cchhhcccCCccccccccchhccccCCCCc------------------
Q 021188 24 QELRRGPWTLEEDTLLTHYIHQHGEGR-----WNMVAKCAGLKRTGKSCRLRWLNYLKPDIK------------------ 80 (316)
Q Consensus 24 ~~lkkg~WT~eED~~L~~lV~~~g~~~-----W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lk------------------ 80 (316)
+.+++++||+|||++|+++|+++|..+ |.+||+.|+ |||+.|||.||..+|.+.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 568999999999999999999998743 999999999 99999999999999999886
Q ss_pred -----------cCCCCHHHHHHHHHHHHh-c-------------------------------------------------
Q 021188 81 -----------RGNLTPQEQFLILELHSK-W------------------------------------------------- 99 (316)
Q Consensus 81 -----------kg~WT~EED~~Ll~lv~~-~------------------------------------------------- 99 (316)
+..||.|||-.|+..+.+ |
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 789999999999998876 1
Q ss_pred ----CC----ChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188 100 ----GN----RWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 100 ----G~----~W~~IA~~lpgRT~~q~knRW~~~l~k~ 129 (316)
|. .|..||+.+|+||.+++|+||+..++..
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 5999999999999999999999888654
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.72 E-value=9.3e-19 Score=144.63 Aligned_cols=82 Identities=26% Similarity=0.447 Sum_probs=77.5
Q ss_pred hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhccc----CCccccccccchhccccC-----CCCccC-CCCHHHHHHH
Q 021188 23 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCA----GLKRTGKSCRLRWLNYLK-----PDIKRG-NLTPQEQFLI 92 (316)
Q Consensus 23 ~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l----~~~Rt~~qcr~Rw~n~L~-----p~lkkg-~WT~EED~~L 92 (316)
.+..++++||+|||+.|+++|++||.++|..|++.+ + +||+.+|++||+++|+ |.++++ +|++||+.+|
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 367899999999999999999999999999999985 5 8999999999999998 999999 9999999999
Q ss_pred HHHHHhcCCChhh
Q 021188 93 LELHSKWGNRWSK 105 (316)
Q Consensus 93 l~lv~~~G~~W~~ 105 (316)
++++..+|++|.+
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999977
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=3.7e-18 Score=124.33 Aligned_cols=56 Identities=30% Similarity=0.577 Sum_probs=53.7
Q ss_pred cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCc
Q 021188 24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIK 80 (316)
Q Consensus 24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lk 80 (316)
|.+++++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|.++
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 789999999999999999999999779999999998 99999999999999999875
No 13
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.70 E-value=4.5e-18 Score=120.44 Aligned_cols=52 Identities=46% Similarity=0.910 Sum_probs=49.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCC
Q 021188 26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPD 78 (316)
Q Consensus 26 lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~ 78 (316)
|++|+||+|||++|+++|.+||.++|..||+.|+ +||+.|||+||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 6899999999999999999999878999999998 999999999999999984
No 14
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.70 E-value=9.2e-18 Score=127.28 Aligned_cols=58 Identities=29% Similarity=0.422 Sum_probs=46.8
Q ss_pred ccchhccccCCCCccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHH
Q 021188 67 CRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTR 125 (316)
Q Consensus 67 cr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~ 125 (316)
.--||.++|+|++++++||+|||++|++++++||++|+.||+.| |||+++||+||+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 99999999999864
No 15
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.69 E-value=7.9e-18 Score=139.24 Aligned_cols=79 Identities=30% Similarity=0.475 Sum_probs=73.5
Q ss_pred hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhccc----CCccccccccchhcccc-----CCCCccCCCCHHH-HHHH
Q 021188 23 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCA----GLKRTGKSCRLRWLNYL-----KPDIKRGNLTPQE-QFLI 92 (316)
Q Consensus 23 ~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l----~~~Rt~~qcr~Rw~n~L-----~p~lkkg~WT~EE-D~~L 92 (316)
....++++||.|||+.|+++|++||.|+|..|++.+ + +||+.||++||++++ +|.++++.|+++| +++|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 366889999999999999999999999999999974 5 899999999999999 8999999999999 8999
Q ss_pred HHHHHhcCCC
Q 021188 93 LELHSKWGNR 102 (316)
Q Consensus 93 l~lv~~~G~~ 102 (316)
++++..||++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999974
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.69 E-value=5.9e-18 Score=119.75 Aligned_cols=52 Identities=35% Similarity=0.742 Sum_probs=48.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCC
Q 021188 26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPD 78 (316)
Q Consensus 26 lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~ 78 (316)
+++|+||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5899999999999999999999889999999998 999999999999999984
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=5.2e-17 Score=120.47 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=57.9
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 021188 74 YLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNI 135 (316)
Q Consensus 74 ~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~ 135 (316)
+|+|.+++++||+|||++|++++++||.+|..||+ ++|||++|||+||+.++++.+++..-
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 79999999999999999999999999999999999 88999999999999999999887643
No 18
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.67 E-value=6.1e-17 Score=122.20 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=59.0
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCc
Q 021188 75 LKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNS 139 (316)
Q Consensus 75 L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~~e 139 (316)
++|.+++++||+|||++|+++|.+||.+|..||+.|+|||++|||+||+.++++..+. ++++.+
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~ 66 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKET 66 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCc
Confidence 5789999999999999999999999999999999999999999999999999998777 665544
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.66 E-value=3e-17 Score=122.86 Aligned_cols=62 Identities=24% Similarity=0.418 Sum_probs=57.7
Q ss_pred cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCC-ccccccccchhccccCCCCccCCCC
Q 021188 24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGL-KRTGKSCRLRWLNYLKPDIKRGNLT 85 (316)
Q Consensus 24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~-~Rt~~qcr~Rw~n~L~p~lkkg~WT 85 (316)
+..++++||+|||++|+++|.+||.++|..||+.|++ +||+.||++||.++|+|.+.++..+
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 6789999999999999999999998899999999976 8999999999999999999987653
No 20
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.2e-17 Score=123.00 Aligned_cols=65 Identities=22% Similarity=0.348 Sum_probs=61.5
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCch
Q 021188 76 KPDIKRGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSE 140 (316)
Q Consensus 76 ~p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~~e~ 140 (316)
.|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.++++.++.+|+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 7999999999999999999999999999999999988875
No 21
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.62 E-value=9.6e-17 Score=118.73 Aligned_cols=56 Identities=23% Similarity=0.486 Sum_probs=49.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccC-CccccccccchhccccCCCCc
Q 021188 25 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAG-LKRTGKSCRLRWLNYLKPDIK 80 (316)
Q Consensus 25 ~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~-~~Rt~~qcr~Rw~n~L~p~lk 80 (316)
..+|++||+|||++|+++|.+||.++|..||+.++ .+||+.||++||++++++.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 35889999999999999999999889999999864 289999999999999998764
No 22
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=1.3e-16 Score=116.39 Aligned_cols=54 Identities=22% Similarity=0.451 Sum_probs=51.2
Q ss_pred cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCC
Q 021188 24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPD 78 (316)
Q Consensus 24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~ 78 (316)
+.+++++||+|||++|+++|.+||.++|.+||+.|+ +||+.|||+||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 679999999999999999999999779999999999 999999999999999864
No 23
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.60 E-value=1.2e-16 Score=133.65 Aligned_cols=102 Identities=16% Similarity=0.291 Sum_probs=78.5
Q ss_pred hhhhhhhhcCccccCCChhh--hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCc
Q 021188 3 TMRAARAAGTKRECNSSEED--QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIK 80 (316)
Q Consensus 3 ~~~~~~~~~~k~~~~~~~~~--~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lk 80 (316)
+|+..+++++.++|..+|.. .|.+++|+||+|||++|+++|.+||. +|..||+.|+ |||+.||+.||.++|++.+.
T Consensus 27 ~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 27 RITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp GGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHHTTGGGCC
T ss_pred HHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhh
Confidence 47778889999999999865 68999999999999999999999997 9999999998 99999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCChhhhhhcC
Q 021188 81 RGNLTPQEQFLILELHSKWGNRWSKIAQCL 110 (316)
Q Consensus 81 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~l 110 (316)
.+.|+.+--. .....+.+|..|++.|
T Consensus 105 ~~~~~~~~~~----p~~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 105 TNSNHKEILL----PDRSKKRKAADVPKKL 130 (131)
T ss_dssp CCTTSCCCCC----CCCC------------
T ss_pred cCCCcccccC----chhhhhhhhhhcchhc
Confidence 9998876311 0122235688888765
No 24
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=5.5e-16 Score=112.76 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=50.5
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188 76 KPDIKRGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 76 ~p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRW~~~l~k~ 129 (316)
+|.+++++||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+++|++.
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence 5788999999999999999999999 69999999999999999999999988654
No 25
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.59 E-value=7.7e-16 Score=108.77 Aligned_cols=50 Identities=26% Similarity=0.478 Sum_probs=46.0
Q ss_pred CccCCCCHHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021188 79 IKRGNLTPQEQFLILELHSKWGN-RWSKIAQCLPGRTDNEIKNYWRTRVQK 128 (316)
Q Consensus 79 lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRW~~~l~k 128 (316)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 999999999999999999999998864
No 26
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.58 E-value=1.4e-15 Score=113.80 Aligned_cols=62 Identities=24% Similarity=0.236 Sum_probs=55.6
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHhcC-CChhhhhhcCC--CCCHHHHHHHHHHHHHHHHHhcCC
Q 021188 74 YLKPDIKRGNLTPQEQFLILELHSKWG-NRWSKIAQCLP--GRTDNEIKNYWRTRVQKQARQLNI 135 (316)
Q Consensus 74 ~L~p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp--gRT~~q~knRW~~~l~k~~r~~~~ 135 (316)
..++..++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+++|++.+.+...
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 345677899999999999999999999 69999999999 999999999999999987766543
No 27
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.57 E-value=1.2e-15 Score=107.87 Aligned_cols=50 Identities=30% Similarity=0.633 Sum_probs=46.6
Q ss_pred CccCCCCHHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021188 79 IKRGNLTPQEQFLILELHSKWGN-RWSKIAQCLPGRTDNEIKNYWRTRVQK 128 (316)
Q Consensus 79 lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRW~~~l~k 128 (316)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999996 799999999999999999999998753
No 28
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-16 Score=117.69 Aligned_cols=56 Identities=21% Similarity=0.363 Sum_probs=52.4
Q ss_pred cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccC
Q 021188 24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRG 82 (316)
Q Consensus 24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg 82 (316)
|.+++++||+|||++|+++|+++|. +|.+||+ ++ +||+.|||+||.++|+|.++++
T Consensus 5 P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 5 SSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 8899999999999999999999998 9999999 76 7999999999999999877654
No 29
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.57 E-value=6e-16 Score=109.96 Aligned_cols=50 Identities=30% Similarity=0.528 Sum_probs=46.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCC-ccccccccchhccccC
Q 021188 27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGL-KRTGKSCRLRWLNYLK 76 (316)
Q Consensus 27 kkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~-~Rt~~qcr~Rw~n~L~ 76 (316)
++|+||+|||++|+++|.+||.++|..||+.+++ +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999976 6999999999999875
No 30
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.56 E-value=9.1e-16 Score=111.17 Aligned_cols=52 Identities=27% Similarity=0.457 Sum_probs=47.9
Q ss_pred cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhcccc
Q 021188 24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYL 75 (316)
Q Consensus 24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L 75 (316)
..+.+++||+|||++|+++|++||.++|.+||+.|+.+||+.|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3477899999999999999999998799999999987899999999999875
No 31
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.5e-16 Score=117.68 Aligned_cols=60 Identities=25% Similarity=0.349 Sum_probs=55.3
Q ss_pred hcCCccCCCCHHHHHHHHHHHHHhCC-----CCcchhhcccCCccccccccchhccccCCCCccCC
Q 021188 23 QQELRRGPWTLEEDTLLTHYIHQHGE-----GRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGN 83 (316)
Q Consensus 23 ~~~lkkg~WT~eED~~L~~lV~~~g~-----~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~ 83 (316)
.|.+++++||+|||++|+++|.+||. ++|.+||+.|+ +||+.||+.||.++|.+.++.|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999995 58999999999 99999999999999998777664
No 32
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.54 E-value=5.6e-15 Score=104.91 Aligned_cols=49 Identities=31% Similarity=0.375 Sum_probs=46.1
Q ss_pred ccCCCCHHHHHHHHHHHHhcC-CChhhhhhcCC--CCCHHHHHHHHHHHHHH
Q 021188 80 KRGNLTPQEQFLILELHSKWG-NRWSKIAQCLP--GRTDNEIKNYWRTRVQK 128 (316)
Q Consensus 80 kkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp--gRT~~q~knRW~~~l~k 128 (316)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999998863
No 33
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=4.9e-15 Score=107.95 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=48.5
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHHHH
Q 021188 76 KPDIKRGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTRVQ 127 (316)
Q Consensus 76 ~p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRW~~~l~ 127 (316)
.+.+.+++||+|||++|+++|.+|| ++|.+||++|+|||+.||++||.+++.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 3578899999999999999999999 799999999999999999999998764
No 34
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.52 E-value=1.4e-15 Score=114.74 Aligned_cols=56 Identities=27% Similarity=0.435 Sum_probs=52.9
Q ss_pred cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCcc
Q 021188 24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKR 81 (316)
Q Consensus 24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkk 81 (316)
|.+++++||+|||++|+++|.+||. +|..||+.|+ +||+.||+.||.++|.+.++.
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999998 9999999999 999999999999999876655
No 35
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.52 E-value=5.5e-15 Score=122.80 Aligned_cols=75 Identities=16% Similarity=0.404 Sum_probs=67.0
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCchH-HHHHHhhhc
Q 021188 76 KPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSET-FFEAVRCYW 150 (316)
Q Consensus 76 ~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~~e~~-~~~~i~~~~ 150 (316)
.+..++++||+|||++|+++|.+||.+|..||..|+||++.||+.||.++|.+.++++.++.+|+. +++.+..|.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G 81 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG 81 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence 456789999999999999999999999999999999999999999999999999999999999887 555555543
No 36
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=6.7e-15 Score=111.63 Aligned_cols=58 Identities=24% Similarity=0.228 Sum_probs=53.6
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhcC------CChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhc
Q 021188 76 KPDIKRGNLTPQEQFLILELHSKWG------NRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQL 133 (316)
Q Consensus 76 ~p~lkkg~WT~EED~~Ll~lv~~~G------~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~ 133 (316)
+|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.||++||+.+|.+.++.+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5788999999999999999999999 689999999999999999999999998876654
No 37
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.50 E-value=7e-15 Score=118.06 Aligned_cols=73 Identities=22% Similarity=0.485 Sum_probs=64.9
Q ss_pred CCccCCCCHHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCchHHH-HHHhhhc
Q 021188 78 DIKRGNLTPQEQFLILELHSKWGN-RWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETFF-EAVRCYW 150 (316)
Q Consensus 78 ~lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~~e~~~~-~~i~~~~ 150 (316)
++++++||+|||++|+++|.+||. +|..||..|+|||+.||+.||.++|.+.++++.++.+|+..+ ..+..|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G 75 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 75 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhC
Confidence 468999999999999999999996 799999999999999999999999999999999999988844 4444443
No 38
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.50 E-value=2.1e-14 Score=106.13 Aligned_cols=51 Identities=29% Similarity=0.457 Sum_probs=46.0
Q ss_pred CccCCCCHHHHHHHHHHHHhcC-CChhhhhhcCC--CCCHHHHHHHHHHHHHHH
Q 021188 79 IKRGNLTPQEQFLILELHSKWG-NRWSKIAQCLP--GRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 79 lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp--gRT~~q~knRW~~~l~k~ 129 (316)
.++++||+|||++|+++|.+|| ++|..||+.++ |||+.||++||++++++.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4788999999999999999999 59999999865 999999999999988753
No 39
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.49 E-value=2.4e-14 Score=103.65 Aligned_cols=50 Identities=20% Similarity=0.381 Sum_probs=46.2
Q ss_pred CCCccCCCCHHHHHHHHHHHHhcC-CChhhhhhcCC-CCCHHHHHHHHHHHH
Q 021188 77 PDIKRGNLTPQEQFLILELHSKWG-NRWSKIAQCLP-GRTDNEIKNYWRTRV 126 (316)
Q Consensus 77 p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp-gRT~~q~knRW~~~l 126 (316)
..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||+.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456788999999999999999999 89999999999 999999999998764
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.48 E-value=1.8e-14 Score=116.28 Aligned_cols=78 Identities=31% Similarity=0.593 Sum_probs=69.0
Q ss_pred hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhccc----CCccccccccchhcccc-----CCCCccCCCCHHHHHH-H
Q 021188 23 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCA----GLKRTGKSCRLRWLNYL-----KPDIKRGNLTPQEQFL-I 92 (316)
Q Consensus 23 ~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l----~~~Rt~~qcr~Rw~n~L-----~p~lkkg~WT~EED~~-L 92 (316)
.+..++++||+|||+.|+++|++||.++|..|++.+ + +||..+|++||++++ +|.++++.-+++|-.. +
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 467899999999999999999999999999999976 5 899999999999998 6899999888888665 8
Q ss_pred HHHHHhcCC
Q 021188 93 LELHSKWGN 101 (316)
Q Consensus 93 l~lv~~~G~ 101 (316)
++++..+|+
T Consensus 87 ~~~~~~~~~ 95 (105)
T 2aje_A 87 LNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877663
No 41
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.46 E-value=3.1e-14 Score=110.40 Aligned_cols=69 Identities=25% Similarity=0.425 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhhcc----cCCccccccccchhcccc-----CCCCccC-CCCHHHHHHHHHHHHh
Q 021188 29 GPWTLEEDTLLTHYIHQHGEGRWNMVAKC----AGLKRTGKSCRLRWLNYL-----KPDIKRG-NLTPQEQFLILELHSK 98 (316)
Q Consensus 29 g~WT~eED~~L~~lV~~~g~~~W~~IA~~----l~~~Rt~~qcr~Rw~n~L-----~p~lkkg-~WT~EED~~Ll~lv~~ 98 (316)
++||+|||++|+++|++||.|+|..|++. ++ +||+.+|++||+++| +|.++++ +...+..++++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999995 77 999999999999988 5766655 6777777889888764
No 42
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.45 E-value=3.1e-14 Score=114.95 Aligned_cols=70 Identities=16% Similarity=0.330 Sum_probs=62.7
Q ss_pred cCCCCHHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCchH-HHHHHhhhc
Q 021188 81 RGNLTPQEQFLILELHSKWGN-RWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSET-FFEAVRCYW 150 (316)
Q Consensus 81 kg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~~e~~-~~~~i~~~~ 150 (316)
+++||+|||++|+++|.+||. +|..||..|+|||+.||+.||.++|.+.++++.++.+|+. ++..+..|.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G 72 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYG 72 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhC
Confidence 579999999999999999995 8999999999999999999999999999999999999888 445554443
No 43
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.45 E-value=2.9e-14 Score=107.98 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=48.4
Q ss_pred cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCcc
Q 021188 24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKR 81 (316)
Q Consensus 24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkk 81 (316)
|++++|+||+|||++|+++|.+||. +|..||+.| +||+.||+.||. .|....+.
T Consensus 19 P~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~-~L~~~~~~ 72 (73)
T 2llk_A 19 DRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCR-LMKDTCNT 72 (73)
T ss_dssp CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHH-HCSCCCSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHH-HHHHHccC
Confidence 8999999999999999999999998 799999999 699999999997 45554443
No 44
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.17 E-value=6.8e-15 Score=115.50 Aligned_cols=57 Identities=19% Similarity=0.217 Sum_probs=53.3
Q ss_pred cccCCCCccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188 73 NYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 73 n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~ 129 (316)
..+.|.+++++||+|||++|+++|.+||.+|..||..|+|||++||++||+.++++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 356788999999999999999999999999999999999999999999999988764
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=106.35 Aligned_cols=49 Identities=29% Similarity=0.488 Sum_probs=46.5
Q ss_pred cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccc
Q 021188 24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNY 74 (316)
Q Consensus 24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~ 74 (316)
....+++||+|||++|+++|++|| ++|.+||++|+ +||+.||+.||.++
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 457899999999999999999999 69999999999 99999999999988
No 46
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.36 E-value=3.4e-13 Score=111.30 Aligned_cols=77 Identities=23% Similarity=0.328 Sum_probs=58.9
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHhcCC-Chhhhhhc----CCCCCHHHHHHHHHHHHH-----HHHHhcCCCCC-chHHH
Q 021188 75 LKPDIKRGNLTPQEQFLILELHSKWGN-RWSKIAQC----LPGRTDNEIKNYWRTRVQ-----KQARQLNIESN-SETFF 143 (316)
Q Consensus 75 L~p~lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~----lpgRT~~q~knRW~~~l~-----k~~r~~~~~~~-e~~~~ 143 (316)
+.+..++++||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++ +.++++...++ +...+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 456778999999999999999999996 99999997 489999999999999998 44445312222 22344
Q ss_pred HHHhhhcC
Q 021188 144 EAVRCYWM 151 (316)
Q Consensus 144 ~~i~~~~~ 151 (316)
..++.+|-
T Consensus 91 ~~~h~~~g 98 (121)
T 2juh_A 91 LAAHAYWS 98 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 45555443
No 47
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.35 E-value=5.6e-13 Score=100.91 Aligned_cols=51 Identities=20% Similarity=0.388 Sum_probs=47.0
Q ss_pred CCCccCCCCHHHHHHHHHHHHhcC----CChhhhhhcCCCCCHHHHHHHHHHHHH
Q 021188 77 PDIKRGNLTPQEQFLILELHSKWG----NRWSKIAQCLPGRTDNEIKNYWRTRVQ 127 (316)
Q Consensus 77 p~lkkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~q~knRW~~~l~ 127 (316)
+...+++||.|||.+|++++.+|| ++|.+||++|||||.++|++||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999 589999999999999999999998764
No 48
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.04 E-value=7.1e-14 Score=109.69 Aligned_cols=53 Identities=28% Similarity=0.530 Sum_probs=50.3
Q ss_pred hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCC
Q 021188 23 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKP 77 (316)
Q Consensus 23 ~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p 77 (316)
.|.+++|+||+|||++|+++|.+||. +|..||+.|+ +||+.||+.||.++|..
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 48899999999999999999999998 8999999999 99999999999998864
No 49
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.34 E-value=1.7e-12 Score=104.79 Aligned_cols=75 Identities=23% Similarity=0.365 Sum_probs=58.5
Q ss_pred CCCccCCCCHHHHHHHHHHHHhcCC-ChhhhhhcC----CCCCHHHHHHHHHHHHH-----HHHHhcCCCCCchHH-HHH
Q 021188 77 PDIKRGNLTPQEQFLILELHSKWGN-RWSKIAQCL----PGRTDNEIKNYWRTRVQ-----KQARQLNIESNSETF-FEA 145 (316)
Q Consensus 77 p~lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~l----pgRT~~q~knRW~~~l~-----k~~r~~~~~~~e~~~-~~~ 145 (316)
+..++++||+|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+++++ +..+++...|.+--. +..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~~ 88 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLN 88 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHHH
Confidence 4567899999999999999999996 999999865 89999999999999996 555555444444332 344
Q ss_pred HhhhcC
Q 021188 146 VRCYWM 151 (316)
Q Consensus 146 i~~~~~ 151 (316)
+..||-
T Consensus 89 ~~~~~~ 94 (105)
T 2aje_A 89 AHGYWT 94 (105)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 50
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.32 E-value=8.4e-13 Score=101.43 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=44.9
Q ss_pred CCccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHH
Q 021188 78 DIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTR 125 (316)
Q Consensus 78 ~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~ 125 (316)
...+++||+|||++|+++|.+||++|.+||++|++||+.||+.||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 446889999999999999999999999999999999999999999764
No 51
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.31 E-value=3e-13 Score=102.44 Aligned_cols=54 Identities=20% Similarity=0.521 Sum_probs=48.9
Q ss_pred hhcCCccCCCCHHHHHHHHHHHHHhCC---CCcchhhcccCCccccccccchhccccC
Q 021188 22 DQQELRRGPWTLEEDTLLTHYIHQHGE---GRWNMVAKCAGLKRTGKSCRLRWLNYLK 76 (316)
Q Consensus 22 ~~~~lkkg~WT~eED~~L~~lV~~~g~---~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~ 76 (316)
+.+...+++||++||++|+++|.+||. .+|.+||+.|| |||..||+.||.+++.
T Consensus 12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 347789999999999999999999993 38999999999 9999999999998765
No 52
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.31 E-value=2.1e-12 Score=100.04 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHhcCC-Chhhhhhc----CCCCCHHHHHHHHHHHHHHHH
Q 021188 82 GNLTPQEQFLILELHSKWGN-RWSKIAQC----LPGRTDNEIKNYWRTRVQKQA 130 (316)
Q Consensus 82 g~WT~EED~~Ll~lv~~~G~-~W~~IA~~----lpgRT~~q~knRW~~~l~k~~ 130 (316)
++||+|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999996 99999995 899999999999999997543
No 53
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.28 E-value=2.2e-12 Score=106.65 Aligned_cols=74 Identities=26% Similarity=0.370 Sum_probs=57.0
Q ss_pred CCCccCCCCHHHHHHHHHHHHhcCC-Chhhhhhc----CCCCCHHHHHHHHHHHHH-----HHHHhcCCCCCc-hHHHHH
Q 021188 77 PDIKRGNLTPQEQFLILELHSKWGN-RWSKIAQC----LPGRTDNEIKNYWRTRVQ-----KQARQLNIESNS-ETFFEA 145 (316)
Q Consensus 77 p~lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~----lpgRT~~q~knRW~~~l~-----k~~r~~~~~~~e-~~~~~~ 145 (316)
...++++||.|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++ +.++++.+.+++ ...+..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~ 106 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLA 106 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHH
Confidence 3457889999999999999999995 99999986 489999999999999996 444555444444 233444
Q ss_pred Hhhhc
Q 021188 146 VRCYW 150 (316)
Q Consensus 146 i~~~~ 150 (316)
++.+|
T Consensus 107 ~h~~~ 111 (122)
T 2roh_A 107 AQAYW 111 (122)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 54
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.23 E-value=1.1e-11 Score=90.45 Aligned_cols=49 Identities=18% Similarity=0.344 Sum_probs=45.4
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCChhhhh---hcCCCCCHHHHHHHHHHHHHH
Q 021188 80 KRGNLTPQEQFLILELHSKWGNRWSKIA---QCLPGRTDNEIKNYWRTRVQK 128 (316)
Q Consensus 80 kkg~WT~EED~~Ll~lv~~~G~~W~~IA---~~lpgRT~~q~knRW~~~l~k 128 (316)
++.+||+|||+.|+++|++||.+|..|+ ..+++||..++|+||+++.++
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6789999999999999999999999999 567999999999999998764
No 55
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.21 E-value=2.9e-12 Score=116.36 Aligned_cols=55 Identities=25% Similarity=0.483 Sum_probs=48.7
Q ss_pred CCCccCCCCHHHHHHHHHHHHhcCCC------hhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 021188 77 PDIKRGNLTPQEQFLILELHSKWGNR------WSKIAQCLPGRTDNEIKNYWRTRVQKQAR 131 (316)
Q Consensus 77 p~lkkg~WT~EED~~Ll~lv~~~G~~------W~~IA~~lpgRT~~q~knRW~~~l~k~~r 131 (316)
+.+++++||+|||++|+++|.++|++ |..||+.|||||+++||+||+.+|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35688999999999999999999975 99999999999999999999999999875
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.17 E-value=3.7e-11 Score=94.92 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=45.5
Q ss_pred ccCCCCHHHHHHHHHHHHhcC----CChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188 80 KRGNLTPQEQFLILELHSKWG----NRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 80 kkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~q~knRW~~~l~k~ 129 (316)
.+++||.|||++|++++.+|| ++|.+||+.|||||.++|++||+.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 57999999999999999999999988664
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.04 E-value=4e-11 Score=94.73 Aligned_cols=48 Identities=19% Similarity=0.392 Sum_probs=43.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhC---CCCcchhhcccCCccccccccchhcccc
Q 021188 27 RRGPWTLEEDTLLTHYIHQHG---EGRWNMVAKCAGLKRTGKSCRLRWLNYL 75 (316)
Q Consensus 27 kkg~WT~eED~~L~~lV~~~g---~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L 75 (316)
.+++||+|||++|++++.+|| ..+|.+||+.|| |||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 468999999999999999997 347999999999 999999999998864
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.93 E-value=1.5e-09 Score=85.54 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=60.3
Q ss_pred cccccchhccccCCCCccCCCCHHHHHHHHHHHHhcCCChhhhhhcC-----CCCCHHHHHHHHHHHHHHHHHhcC
Q 021188 64 GKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCL-----PGRTDNEIKNYWRTRVQKQARQLN 134 (316)
Q Consensus 64 ~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~l-----pgRT~~q~knRW~~~l~k~~r~~~ 134 (316)
..=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++.++..+
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35578899999976 89999999999999999999999999998 589999999999999988877653
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.5e-09 Score=79.10 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=43.4
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHH
Q 021188 80 KRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRV 126 (316)
Q Consensus 80 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l 126 (316)
..++||+||++++++++.+||.+|..||..||+||..+|..+|....
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999999997643
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.88 E-value=6.1e-10 Score=81.22 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=44.9
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcchhh---cccCCccccccccchhccccCC
Q 021188 26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVA---KCAGLKRTGKSCRLRWLNYLKP 77 (316)
Q Consensus 26 lkkg~WT~eED~~L~~lV~~~g~~~W~~IA---~~l~~~Rt~~qcr~Rw~n~L~p 77 (316)
-++.+||+|||+.|+++|++||. +|..|+ ..+. +||...+++||++..+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHhc
Confidence 47899999999999999999998 999999 4665 99999999999987653
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=2.5e-09 Score=77.91 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=44.7
Q ss_pred cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhcccc
Q 021188 24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYL 75 (316)
Q Consensus 24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L 75 (316)
..-..++||+||++++.+++.+||. +|..||+.|+ +||..||+.+|....
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 3456799999999999999999996 9999999999 999999999996543
No 62
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.77 E-value=3.6e-09 Score=79.74 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=44.7
Q ss_pred CCccCCCCHHHHHHHHHHHHhcC----CChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021188 78 DIKRGNLTPQEQFLILELHSKWG----NRWSKIAQCLPGRTDNEIKNYWRTRVQK 128 (316)
Q Consensus 78 ~lkkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~q~knRW~~~l~k 128 (316)
..+.+.||.|||.+|.+++.+|+ ++|.+||..+ |||..+|+.||+.+.+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34578999999999999999997 4799999998 99999999999987654
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.70 E-value=9e-09 Score=92.77 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=44.8
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHH
Q 021188 80 KRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQ 127 (316)
Q Consensus 80 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~ 127 (316)
..++||+||++++++++.+||++|..||+.+++||..|||++|..+.+
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999999987664
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.61 E-value=8.5e-09 Score=77.66 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=43.8
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCC---CCcchhhcccCCccccccccchhccccC
Q 021188 25 ELRRGPWTLEEDTLLTHYIHQHGE---GRWNMVAKCAGLKRTGKSCRLRWLNYLK 76 (316)
Q Consensus 25 ~lkkg~WT~eED~~L~~lV~~~g~---~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~ 76 (316)
..+++.||.|||++|.+++.+|+. ++|.+||+.+ +||..+|+.||..+..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 456789999999999999999984 4799999997 4999999999987654
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.49 E-value=4.9e-08 Score=96.98 Aligned_cols=43 Identities=21% Similarity=0.457 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHH
Q 021188 82 GNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRT 124 (316)
Q Consensus 82 g~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~ 124 (316)
..||+||-+++++++.+||.+|..||+.++.||..|||++|..
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 423 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999864
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.48 E-value=3.2e-08 Score=71.66 Aligned_cols=48 Identities=23% Similarity=0.457 Sum_probs=43.1
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcchhhc-ccCCccccccccchhccccC
Q 021188 28 RGPWTLEEDTLLTHYIHQH--------GEGRWNMVAK-CAGLKRTGKSCRLRWLNYLK 76 (316)
Q Consensus 28 kg~WT~eED~~L~~lV~~~--------g~~~W~~IA~-~l~~~Rt~~qcr~Rw~n~L~ 76 (316)
|.+||+|||+.|++.|.++ |+.-|.++++ .++ ++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 6789999999999999999 4445999999 787 9999999999998875
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.47 E-value=4.8e-08 Score=73.63 Aligned_cols=48 Identities=21% Similarity=0.435 Sum_probs=43.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCcchhhcccCCccccccccchhccccC
Q 021188 28 RGPWTLEEDTLLTHYIHQHGE---GRWNMVAKCAGLKRTGKSCRLRWLNYLK 76 (316)
Q Consensus 28 kg~WT~eED~~L~~lV~~~g~---~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~ 76 (316)
...||.+|+++|.+++..|+. ++|.+||..+| +||..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 468999999999999999975 47999999999 9999999999987754
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.42 E-value=1.3e-07 Score=71.22 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=42.2
Q ss_pred cCCCCHHHHHHHHHHHHhcCC----ChhhhhhcCCCCCHHHHHHHHHHHH
Q 021188 81 RGNLTPQEQFLILELHSKWGN----RWSKIAQCLPGRTDNEIKNYWRTRV 126 (316)
Q Consensus 81 kg~WT~EED~~Ll~lv~~~G~----~W~~IA~~lpgRT~~q~knRW~~~l 126 (316)
...||.+|+++|.+++..|+. +|.+||..++|||..+|+.||..++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 468999999999999999984 6999999999999999999998764
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.37 E-value=1.1e-07 Score=85.70 Aligned_cols=49 Identities=20% Similarity=0.399 Sum_probs=45.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccC
Q 021188 26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLK 76 (316)
Q Consensus 26 lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~ 76 (316)
...++||.||++++++++.+||. +|..||+.|+ +||..||+.+|.++.+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 45789999999999999999997 9999999999 9999999999988764
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.37 E-value=2.2e-07 Score=67.29 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=41.7
Q ss_pred cCCCCHHHHHHHHHHHHhc--------CC-Chhhhhh-cCCCCCHHHHHHHHHHHHH
Q 021188 81 RGNLTPQEQFLILELHSKW--------GN-RWSKIAQ-CLPGRTDNEIKNYWRTRVQ 127 (316)
Q Consensus 81 kg~WT~EED~~Ll~lv~~~--------G~-~W~~IA~-~lpgRT~~q~knRW~~~l~ 127 (316)
+.+||+|||..|+++|.+| |+ -|..+++ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 43 3999999 7999999999999987653
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.08 E-value=5.6e-06 Score=78.01 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=82.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccc-------hhccc---------------------------
Q 021188 29 GPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRL-------RWLNY--------------------------- 74 (316)
Q Consensus 29 g~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~-------Rw~n~--------------------------- 74 (316)
+.||..+...++.++.+||..+|..||..|+ ++|...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999998 888877752 22100
Q ss_pred ----------------cCCCCccCCCCHHHHHHHHHHHHhcCC----Chhhhhh------------cCCCCCHHHHHHHH
Q 021188 75 ----------------LKPDIKRGNLTPQEQFLILELHSKWGN----RWSKIAQ------------CLPGRTDNEIKNYW 122 (316)
Q Consensus 75 ----------------L~p~lkkg~WT~EED~~Ll~lv~~~G~----~W~~IA~------------~lpgRT~~q~knRW 122 (316)
..+..++..||++||..||-++.+||- .|..|.. .+..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 001224568999999999999999994 5999962 44679999999999
Q ss_pred HHHHHHHHHh
Q 021188 123 RTRVQKQARQ 132 (316)
Q Consensus 123 ~~~l~k~~r~ 132 (316)
..+++-..+.
T Consensus 270 ~tLi~~iekE 279 (304)
T 1ofc_X 270 NTLITLIERE 279 (304)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999866554
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.07 E-value=7e-07 Score=67.00 Aligned_cols=44 Identities=20% Similarity=0.437 Sum_probs=39.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---CcchhhcccCCccccccccchhc
Q 021188 28 RGPWTLEEDTLLTHYIHQHGEG---RWNMVAKCAGLKRTGKSCRLRWL 72 (316)
Q Consensus 28 kg~WT~eED~~L~~lV~~~g~~---~W~~IA~~l~~~Rt~~qcr~Rw~ 72 (316)
.+.||.+|+++|.+++..|+.+ +|.+||+.|| |||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 5689999999999999999764 7999999999 999999999995
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=7.7e-06 Score=59.69 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=44.0
Q ss_pred CCCccCCCCHHHHHHHHHHHHhcCCChhhhhh-cCCCCCHHHHHHHHHH
Q 021188 77 PDIKRGNLTPQEQFLILELHSKWGNRWSKIAQ-CLPGRTDNEIKNYWRT 124 (316)
Q Consensus 77 p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~-~lpgRT~~q~knRW~~ 124 (316)
|.++...||+||-.+..+.+.+||.+|..|++ .+++||..+|...|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 56778899999999999999999999999999 5899999999988864
No 74
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.04 E-value=8.4e-06 Score=63.38 Aligned_cols=49 Identities=24% Similarity=0.265 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---ChhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 021188 83 NLTPQEQFLILELHSKWGN---RWSKIAQCLPGRTDNEIKNYWRTRVQKQAR 131 (316)
Q Consensus 83 ~WT~EED~~Ll~lv~~~G~---~W~~IA~~lpgRT~~q~knRW~~~l~k~~r 131 (316)
.||.|||..||...++-|. .|..||+.|.+|+.+||++||+.+++-..+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999999996 799999999999999999999998875543
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.98 E-value=2.3e-06 Score=64.22 Aligned_cols=43 Identities=28% Similarity=0.343 Sum_probs=38.6
Q ss_pred cCCCCHHHHHHHHHHHHhcCC----ChhhhhhcCCCCCHHHHHHHHH
Q 021188 81 RGNLTPQEQFLILELHSKWGN----RWSKIAQCLPGRTDNEIKNYWR 123 (316)
Q Consensus 81 kg~WT~EED~~Ll~lv~~~G~----~W~~IA~~lpgRT~~q~knRW~ 123 (316)
...||.||+++|..++..|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999875
No 76
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.10 E-value=1.7e-06 Score=63.76 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---ChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188 83 NLTPQEQFLILELHSKWGN---RWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 83 ~WT~EED~~Ll~lv~~~G~---~W~~IA~~lpgRT~~q~knRW~~~l~k~ 129 (316)
.||.|||..||..+++-|. .|..||..| +|+++||++||+.+++-.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf 64 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLF 64 (70)
Confidence 5999999999999999997 799999999 999999999999887643
No 77
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.85 E-value=3.3e-05 Score=60.61 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=52.0
Q ss_pred chhccccCCCCccCCCCHHHHHHHHHHHHhcCCChhhhhhcCC-----CCCHHHHHHHHHHHHHHHHHhc
Q 021188 69 LRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLP-----GRTDNEIKNYWRTRVQKQARQL 133 (316)
Q Consensus 69 ~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lp-----gRT~~q~knRW~~~l~k~~r~~ 133 (316)
+.|..+|. ...||.||...|++|+++|+-+|..|+..+. .||-.++|.||..+.++.++..
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34555664 3689999999999999999999999998763 7999999999999998877654
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=1e-05 Score=59.04 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=44.5
Q ss_pred hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhc-ccCCccccccccchhcc
Q 021188 23 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAK-CAGLKRTGKSCRLRWLN 73 (316)
Q Consensus 23 ~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~-~l~~~Rt~~qcr~Rw~n 73 (316)
.|.+....||+||-++..+++.+||. +|..|++ .++ +|+..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 37788999999999999999999998 9999999 588 9999999887753
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.60 E-value=8.5e-05 Score=58.42 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=41.1
Q ss_pred cCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHH
Q 021188 81 RGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRT 124 (316)
Q Consensus 81 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~ 124 (316)
...||+||.++..+.+..||.+|..||..|++||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 45899999999999999999999999999999999999998764
No 80
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.58 E-value=2.4e-05 Score=61.50 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=44.6
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccC----CccccccccchhccccC
Q 021188 25 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAG----LKRTGKSCRLRWLNYLK 76 (316)
Q Consensus 25 ~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~----~~Rt~~qcr~Rw~n~L~ 76 (316)
-|+.++||.||+..|++|+++|+- +|..|+.++. .+||..++++||..+..
T Consensus 27 ~L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 27 YLHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp HTCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 356699999999999999999998 9999999992 27999999999986543
No 81
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.53 E-value=0.00014 Score=54.10 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=40.7
Q ss_pred cCCCCHHHHHHHHHHHHhcCCChhhhhh-cCCCCCHHHHHHHHHH
Q 021188 81 RGNLTPQEQFLILELHSKWGNRWSKIAQ-CLPGRTDNEIKNYWRT 124 (316)
Q Consensus 81 kg~WT~EED~~Ll~lv~~~G~~W~~IA~-~lpgRT~~q~knRW~~ 124 (316)
...||+||-.+..+.+.+||.+|..|++ .+++||..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999 5899999999998863
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.53 E-value=3e-05 Score=77.12 Aligned_cols=47 Identities=21% Similarity=0.412 Sum_probs=43.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhcccc
Q 021188 27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYL 75 (316)
Q Consensus 27 kkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L 75 (316)
...+||.||-+++++++.+||. +|..||+.++ +||..||+.+|.++-
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4689999999999999999997 9999999999 999999999997653
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.21 E-value=0.00015 Score=57.05 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=40.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhc
Q 021188 27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWL 72 (316)
Q Consensus 27 kkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~ 72 (316)
....||+||.+++.+++..||. +|..||+.++ +||..+|...|.
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHh
Confidence 3578999999999999999998 9999999999 999999998774
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.19 E-value=4.6e-05 Score=58.54 Aligned_cols=50 Identities=22% Similarity=0.496 Sum_probs=40.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhCC---------CCcchhhccc---CCccccccccchhcccc
Q 021188 26 LRRGPWTLEEDTLLTHYIHQHGE---------GRWNMVAKCA---GLKRTGKSCRLRWLNYL 75 (316)
Q Consensus 26 lkkg~WT~eED~~L~~lV~~~g~---------~~W~~IA~~l---~~~Rt~~qcr~Rw~n~L 75 (316)
-+...||.+|-..|+++...... .-|..||..| |..||+.||+.+|.++.
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 36789999999999999976321 1599999986 45799999999998764
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.18 E-value=0.00018 Score=53.53 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=40.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcchhhc-ccCCccccccccchhcc
Q 021188 27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAK-CAGLKRTGKSCRLRWLN 73 (316)
Q Consensus 27 kkg~WT~eED~~L~~lV~~~g~~~W~~IA~-~l~~~Rt~~qcr~Rw~n 73 (316)
....||+||-++..+++.+||. +|..|++ .|+ +|+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 4568999999999999999998 9999999 588 9999999987753
No 86
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.13 E-value=0.00098 Score=58.84 Aligned_cols=105 Identities=11% Similarity=0.073 Sum_probs=69.6
Q ss_pred cCCccCCCCHHHHHHHHHHHHHhC--CCCcchhhcc--cCCccccccccc-------hhccccC----------------
Q 021188 24 QELRRGPWTLEEDTLLTHYIHQHG--EGRWNMVAKC--AGLKRTGKSCRL-------RWLNYLK---------------- 76 (316)
Q Consensus 24 ~~lkkg~WT~eED~~L~~lV~~~g--~~~W~~IA~~--l~~~Rt~~qcr~-------Rw~n~L~---------------- 76 (316)
|.-....||..|-..|++++.+|| .++|..|++. +. +++...++. ++...++
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~ 81 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKV 81 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 445678899999999999999999 5689999864 33 455543331 1000000
Q ss_pred ------------------------------------------------CCCccCCCCHHHHHHHHHHHHhcC-CChhhhh
Q 021188 77 ------------------------------------------------PDIKRGNLTPQEQFLILELHSKWG-NRWSKIA 107 (316)
Q Consensus 77 ------------------------------------------------p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA 107 (316)
+......||++||..||..+.+|| ++|..|.
T Consensus 82 ~~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir 161 (211)
T 4b4c_A 82 KGPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIK 161 (211)
T ss_dssp -CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHH
Confidence 001123599999999999999999 8999996
Q ss_pred h--cC------------CCCCHHHHHHHHHHHHHHH
Q 021188 108 Q--CL------------PGRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 108 ~--~l------------pgRT~~q~knRW~~~l~k~ 129 (316)
. .| ..++...+..|-..+|+-.
T Consensus 162 ~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 162 MDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp HCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred hChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence 5 21 1255678899987776643
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.01 E-value=0.00035 Score=53.52 Aligned_cols=50 Identities=12% Similarity=0.312 Sum_probs=40.9
Q ss_pred ccCCCCHHHHHHHHHHHHhcCC----------ChhhhhhcCC----CCCHHHHHHHHHHHHHHH
Q 021188 80 KRGNLTPQEQFLILELHSKWGN----------RWSKIAQCLP----GRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 80 kkg~WT~EED~~Ll~lv~~~G~----------~W~~IA~~lp----gRT~~q~knRW~~~l~k~ 129 (316)
+...||.+|-..||+++.++.. .|..||..|. .||+.||+.+|.++.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3568999999999999875321 4999998863 699999999999977654
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.96 E-value=0.0017 Score=62.58 Aligned_cols=106 Identities=19% Similarity=0.212 Sum_probs=79.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccc-------hhccc---------------------------
Q 021188 29 GPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRL-------RWLNY--------------------------- 74 (316)
Q Consensus 29 g~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~-------Rw~n~--------------------------- 74 (316)
+.||.-+=..++.+..+||..+-..||..|+.+.+...++. ||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888889999999999889999999954567666551 22110
Q ss_pred -------------c--C-CCC--ccCCCCHHHHHHHHHHHHhcC----CChhhhhhc------------CCCCCHHHHHH
Q 021188 75 -------------L--K-PDI--KRGNLTPQEQFLILELHSKWG----NRWSKIAQC------------LPGRTDNEIKN 120 (316)
Q Consensus 75 -------------L--~-p~l--kkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~------------lpgRT~~q~kn 120 (316)
| . +.. ++..||++||..||-++.+|| +.|..|-.. +..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 0 111 345799999999999999999 469999442 45699999999
Q ss_pred HHHHHHHHHHHhcC
Q 021188 121 YWRTRVQKQARQLN 134 (316)
Q Consensus 121 RW~~~l~k~~r~~~ 134 (316)
|...+++-..|...
T Consensus 284 Rc~tLi~~IeKE~~ 297 (374)
T 2y9y_A 284 RGNTLLQCLEKEFN 297 (374)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999987766543
No 89
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.45 E-value=0.0013 Score=51.05 Aligned_cols=51 Identities=16% Similarity=0.313 Sum_probs=44.2
Q ss_pred hcCCccCCCCHHHHHHHHHHHHHhCC--CCcchhhcccCCccccccccchhccc
Q 021188 23 QQELRRGPWTLEEDTLLTHYIHQHGE--GRWNMVAKCAGLKRTGKSCRLRWLNY 74 (316)
Q Consensus 23 ~~~lkkg~WT~eED~~L~~lV~~~g~--~~W~~IA~~l~~~Rt~~qcr~Rw~n~ 74 (316)
+.+-+--.||.|||..|+...++.|. ..|..||+.|+ +|++.|+++|++..
T Consensus 28 s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred CCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 45556678999999999999999875 36999999998 99999999999754
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.44 E-value=0.00049 Score=50.73 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=41.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC--CCcchhhcccCCccccccccchhccccC
Q 021188 27 RRGPWTLEEDTLLTHYIHQHGE--GRWNMVAKCAGLKRTGKSCRLRWLNYLK 76 (316)
Q Consensus 27 kkg~WT~eED~~L~~lV~~~g~--~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~ 76 (316)
.--.||.|||..|+...++.|. .-|..||+.+ +|++.|+.+||+..+.
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 4457999999999999998885 3699999988 5999999999987654
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.27 E-value=0.0081 Score=46.98 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=43.6
Q ss_pred cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccC----Cccccccccchhcccc
Q 021188 24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAG----LKRTGKSCRLRWLNYL 75 (316)
Q Consensus 24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~----~~Rt~~qcr~Rw~n~L 75 (316)
.-|+...||.||...|.+++++|.- +|-.|+.... ..|+..+.++||..+.
T Consensus 26 ~~L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 26 LYLHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp HHTCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 4466789999999999999999998 9999999874 2689999999997654
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.23 E-value=0.047 Score=39.77 Aligned_cols=48 Identities=15% Similarity=-0.002 Sum_probs=41.2
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCC---hhhhhhcC--CCCCHHHHHHHHHHHHH
Q 021188 80 KRGNLTPQEQFLILELHSKWGNR---WSKIAQCL--PGRTDNEIKNYWRTRVQ 127 (316)
Q Consensus 80 kkg~WT~EED~~Ll~lv~~~G~~---W~~IA~~l--pgRT~~q~knRW~~~l~ 127 (316)
.+-.||+|...+.+++|.++|.. +..|.+.| +|.|..+|+.|.+.+..
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 46689999999999999999954 78998876 79999999999876543
No 93
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=92.57 E-value=0.064 Score=49.59 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhhcc
Q 021188 29 GPWTLEEDTLLTHYIHQHGEGRWNMVAKC 57 (316)
Q Consensus 29 g~WT~eED~~L~~lV~~~g~~~W~~IA~~ 57 (316)
..|+.+||..|+..|.+||.|+|..|-.-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 45999999999999999999999999864
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.87 E-value=0.26 Score=46.23 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=42.1
Q ss_pred cCCCCHHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021188 81 RGNLTPQEQFLILELHSKWGN-RWSKIAQCLPGRTDNEIKNYWRTRVQK 128 (316)
Q Consensus 81 kg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRW~~~l~k 128 (316)
-+.||..|...++.++.+||. .|..||..++|+|..+|+.++.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 347999999999999999995 899999999999999998777665543
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=90.07 E-value=0.52 Score=41.10 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=41.6
Q ss_pred ccCCCCHHHHHHHHHHHHhcC---CChhhhhhc--CCCCCHHHHHHHHHHHHHHH
Q 021188 80 KRGNLTPQEQFLILELHSKWG---NRWSKIAQC--LPGRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 80 kkg~WT~EED~~Ll~lv~~~G---~~W~~IA~~--lpgRT~~q~knRW~~~l~k~ 129 (316)
....||+.|-..|++++.+|| .+|..|+.. |.+|+...|+..+...+..-
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 456899999999999999999 489999864 78999999998777666543
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=89.11 E-value=0.26 Score=35.83 Aligned_cols=48 Identities=15% Similarity=0.107 Sum_probs=37.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCC---cchhhcccCC-ccccccccchhcc
Q 021188 25 ELRRGPWTLEEDTLLTHYIHQHGEGR---WNMVAKCAGL-KRTGKSCRLRWLN 73 (316)
Q Consensus 25 ~lkkg~WT~eED~~L~~lV~~~g~~~---W~~IA~~l~~-~Rt~~qcr~Rw~n 73 (316)
...+-.||+|..++.+++|.+.|. + +..|.+.|+. +.|..+++-|.+.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 456789999999999999999994 4 6788887753 5677777765443
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=86.65 E-value=0.39 Score=44.28 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHhcC-CChhhhhh
Q 021188 82 GNLTPQEQFLILELHSKWG-NRWSKIAQ 108 (316)
Q Consensus 82 g~WT~EED~~Ll~lv~~~G-~~W~~IA~ 108 (316)
..|+.+||..||..|.+|| +.|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999 89999964
No 98
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=77.11 E-value=14 Score=28.76 Aligned_cols=77 Identities=14% Similarity=0.200 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHH-----------HHHHHHHHHHHhcCCCCCchHHHHHHhhhcCCh
Q 021188 85 TPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKN-----------YWRTRVQKQARQLNIESNSETFFEAVRCYWMPR 153 (316)
Q Consensus 85 T~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~kn-----------RW~~~l~k~~r~~~~~~~e~~~~~~i~~~~~p~ 153 (316)
++.-+..|..+....|..|..+|+.| |=+..+|.. +-..+|+.=..+.+-...-..+..++..-....
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~I~~~~p~~~~eq~~~mL~~W~~~~g~~AT~~~L~~aL~~i~r~d 92 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINRIRVENPNSLLEQSVALLNLWVIREGQNANMENLYTALQSIDRGE 92 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHTTCCH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHcCcHH
Confidence 56667788888899999999999999 777765543 233445444455566677788999999988988
Q ss_pred hHHHhhhcC
Q 021188 154 LLQKMEQNS 162 (316)
Q Consensus 154 ~~~k~~q~~ 162 (316)
+..++....
T Consensus 93 iae~l~~~~ 101 (111)
T 2yqf_A 93 IVNMLEGSG 101 (111)
T ss_dssp HHHHHSCCC
T ss_pred HHHHHHHhc
Confidence 888887653
No 99
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=74.39 E-value=18 Score=28.10 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCChhhhhhcCCCCCHHHHHH----------HHHHHHHHHHHhcCCCCCchHHHHHHhhhcCChhHHHh
Q 021188 89 QFLILELHSKWGNRWSKIAQCLPGRTDNEIKN----------YWRTRVQKQARQLNIESNSETFFEAVRCYWMPRLLQKM 158 (316)
Q Consensus 89 D~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~kn----------RW~~~l~k~~r~~~~~~~e~~~~~~i~~~~~p~~~~k~ 158 (316)
+..|-.+....|..|..+|++| |=+..+|.. +-..+|+.=..+.|....-..+..++....+.....++
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ie~~~~~~~eq~~~mL~~W~~r~G~~AT~~~L~~AL~~~~~~dvae~l 96 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQIECDSEDMKMRAKQLLVAWQDQEGVHATPENLINALNKSGLSDLAESL 96 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHHHHHcCCCHHHHHHHHHHHHHHhhCcCcHHHHHHHHHHHcCcHHHHHHH
Confidence 4455566678899999999999 766666643 33444544444555567778899999988888888887
Q ss_pred hhcC
Q 021188 159 EQNS 162 (316)
Q Consensus 159 ~q~~ 162 (316)
....
T Consensus 97 ~~~~ 100 (110)
T 1wxp_A 97 TNDN 100 (110)
T ss_dssp HCCC
T ss_pred HHHh
Confidence 6544
No 100
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=69.40 E-value=1.9 Score=34.98 Aligned_cols=57 Identities=19% Similarity=0.325 Sum_probs=40.0
Q ss_pred HHHHHHHHhCC-------CCcchhhcccCCcccc----ccccchhccccCCCCccCCCCHHHHHHHHHHHH
Q 021188 38 LLTHYIHQHGE-------GRWNMVAKCAGLKRTG----KSCRLRWLNYLKPDIKRGNLTPQEQFLILELHS 97 (316)
Q Consensus 38 ~L~~lV~~~g~-------~~W~~IA~~l~~~Rt~----~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~ 97 (316)
+|..+|.+.|. +.|.+||..|+...+. ...|..|.++|.| -...+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~---YE~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS---YDSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH---HHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH---HHCcCHHHHhhHHHHHH
Confidence 45566666652 3799999999754432 4668889999876 23478899888876654
No 101
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=67.89 E-value=12 Score=30.21 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCC--------ChhhhhhcC--CCC---CHHHHHHHHHHHHHHHHHhc
Q 021188 89 QFLILELHSKWGN--------RWSKIAQCL--PGR---TDNEIKNYWRTRVQKQARQL 133 (316)
Q Consensus 89 D~~Ll~lv~~~G~--------~W~~IA~~l--pgR---T~~q~knRW~~~l~k~~r~~ 133 (316)
=-+|..+|.+.|+ .|..||..| +.. ....+|..|..+|.+..+..
T Consensus 54 L~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~ 111 (128)
T 1c20_A 54 LYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEK 111 (128)
T ss_dssp HHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888885 699999998 222 25789999999888766544
No 102
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=67.72 E-value=3.4 Score=39.73 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=28.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---CCcchhhccc
Q 021188 27 RRGPWTLEEDTLLTHYIHQHGE---GRWNMVAKCA 58 (316)
Q Consensus 27 kkg~WT~eED~~L~~lV~~~g~---~~W~~IA~~l 58 (316)
++..||.+||..|+-++.+||. ++|.+|-..+
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I 261 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEI 261 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 5678999999999999999999 8999997654
No 103
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=60.76 E-value=12 Score=25.59 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 021188 87 QEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQA 130 (316)
Q Consensus 87 EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~ 130 (316)
+.+..++.++...|-.+..||..+ |-+...|+.+....+++..
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDALL 60 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 445555666667788999999999 8899999988776655543
No 104
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=57.91 E-value=19 Score=29.68 Aligned_cols=44 Identities=16% Similarity=0.332 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCC--------ChhhhhhcC--CCC---CHHHHHHHHHHHHHHHHHhc
Q 021188 90 FLILELHSKWGN--------RWSKIAQCL--PGR---TDNEIKNYWRTRVQKQARQL 133 (316)
Q Consensus 90 ~~Ll~lv~~~G~--------~W~~IA~~l--pgR---T~~q~knRW~~~l~k~~r~~ 133 (316)
-+|..+|.+.|+ .|..||..| +.. ....+|..|..+|.+.....
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~ 123 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEK 123 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 456777777775 699999998 222 25789999999887765543
No 105
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=56.17 E-value=16 Score=25.66 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHh----cCCChhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 021188 84 LTPQEQFLILELHSK----WGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQA 130 (316)
Q Consensus 84 WT~EED~~Ll~lv~~----~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~ 130 (316)
.++.|- .++.+..- .|..+.+||..+ |-+...|+.+....+++..
T Consensus 11 L~~~er-~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSEREA-MVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHHH-HHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 344444 44444443 567899999999 9999999998777666554
No 106
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=54.85 E-value=7.7 Score=30.77 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=31.1
Q ss_pred HHHHHHHhcCC--------ChhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 021188 91 LILELHSKWGN--------RWSKIAQCLPGRTDNEIKNYWRTRVQKQAR 131 (316)
Q Consensus 91 ~Ll~lv~~~G~--------~W~~IA~~lpgRT~~q~knRW~~~l~k~~r 131 (316)
+|..+|.+.|+ .|..||..|.--.+..+|..|..+|-+.-+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 101 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 101 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 56677777774 699999998433478999999988876544
No 107
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=54.28 E-value=23 Score=27.34 Aligned_cols=42 Identities=12% Similarity=0.303 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCC--------ChhhhhhcCCC-CC---HHHHHHHHHHHHHHHHH
Q 021188 90 FLILELHSKWGN--------RWSKIAQCLPG-RT---DNEIKNYWRTRVQKQAR 131 (316)
Q Consensus 90 ~~Ll~lv~~~G~--------~W~~IA~~lpg-RT---~~q~knRW~~~l~k~~r 131 (316)
-+|..+|.+.|+ .|..||+.|.- .+ ...+|..|..+|.+..+
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~ 100 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFEV 100 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 456677777774 69999999833 22 46889999888876544
No 108
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=53.11 E-value=3.6 Score=32.75 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=30.1
Q ss_pred HHHHHHHHhCC-------CCcchhhcccCCccccccccchhccccCC
Q 021188 38 LLTHYIHQHGE-------GRWNMVAKCAGLKRTGKSCRLRWLNYLKP 77 (316)
Q Consensus 38 ~L~~lV~~~g~-------~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p 77 (316)
+|..+|.+.|. +.|.+||..++... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 47777777762 37999999998444 78888999888875
No 109
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=50.72 E-value=64 Score=25.29 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCChhhhhhcCCCCCHHHHHH---HH--------HHHHHHHHHhc-CCCCCchHHHHHHhhhcCChhHH
Q 021188 89 QFLILELHSKWGNRWSKIAQCLPGRTDNEIKN---YW--------RTRVQKQARQL-NIESNSETFFEAVRCYWMPRLLQ 156 (316)
Q Consensus 89 D~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~kn---RW--------~~~l~k~~r~~-~~~~~e~~~~~~i~~~~~p~~~~ 156 (316)
|..|..+....|..|..+|+.| |=+..+|.. .+ ..+|+.=..+. +....-..+..++..-....+..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~I~~~~~~~l~eq~~~mL~~W~~~~g~~~Atv~~L~~aL~~~~r~diae 91 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQRIRHEFRDDLDEQIRHMLFSWAERQAGQPGAVGLLVQALEQSDRQDVAE 91 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSSCSSHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHcCcHHHHH
Confidence 4567777899999999999999 666665533 23 23333333333 33455577888888888888777
Q ss_pred Hhhhc
Q 021188 157 KMEQN 161 (316)
Q Consensus 157 k~~q~ 161 (316)
+++..
T Consensus 92 ~l~~~ 96 (118)
T 2of5_H 92 EVRAV 96 (118)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 110
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=50.58 E-value=20 Score=28.40 Aligned_cols=42 Identities=17% Similarity=0.300 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCC--------ChhhhhhcCCCCC----HHHHHHHHHHHHHHHHH
Q 021188 90 FLILELHSKWGN--------RWSKIAQCLPGRT----DNEIKNYWRTRVQKQAR 131 (316)
Q Consensus 90 ~~Ll~lv~~~G~--------~W~~IA~~lpgRT----~~q~knRW~~~l~k~~r 131 (316)
-+|..+|.+.|+ .|..||+.|.--. ...+|..|..+|.+..+
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~ 96 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEM 96 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 457777888774 6999999983222 56889999888876543
No 111
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=50.37 E-value=15 Score=29.52 Aligned_cols=42 Identities=21% Similarity=0.353 Sum_probs=31.9
Q ss_pred HHHHHHHhcCC--------ChhhhhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 021188 91 LILELHSKWGN--------RWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132 (316)
Q Consensus 91 ~Ll~lv~~~G~--------~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~ 132 (316)
+|..+|.+.|+ .|..||+.|.--....+|..|..+|-+..+.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~~ 101 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYERH 101 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHHH
Confidence 46666777664 4999999884334899999999999877653
No 112
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=50.31 E-value=17 Score=25.15 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=29.4
Q ss_pred HHHHHHHHHH----hcCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188 88 EQFLILELHS----KWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 88 ED~~Ll~lv~----~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~ 129 (316)
.+..++.+.. ..|..+.+||+.+ |-+...|+.+....+++.
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3444444444 3467899999999 999999998877655443
No 113
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=49.59 E-value=20 Score=28.54 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCC--------ChhhhhhcCCCC--C--HHHHHHHHHHHHHHHHH
Q 021188 90 FLILELHSKWGN--------RWSKIAQCLPGR--T--DNEIKNYWRTRVQKQAR 131 (316)
Q Consensus 90 ~~Ll~lv~~~G~--------~W~~IA~~lpgR--T--~~q~knRW~~~l~k~~r 131 (316)
-+|..+|.+.|+ .|..|++.|.-. + ...+|..|..+|.+.-+
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~ 98 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNL 98 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 456677777774 699999998322 1 36788888888776543
No 114
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=49.15 E-value=28 Score=25.52 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188 87 QEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 87 EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~ 129 (316)
+.+..++.++...|-.-..||+.| |-+...|+.+....+++.
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 345556666666788899999999 899999998877655443
No 115
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=48.67 E-value=25 Score=26.63 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHH------HHHHHHHHHHHhcCCCCCchHHHHHHhhhcCChhHHHhh
Q 021188 86 PQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKN------YWRTRVQKQARQLNIESNSETFFEAVRCYWMPRLLQKME 159 (316)
Q Consensus 86 ~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~kn------RW~~~l~k~~r~~~~~~~e~~~~~~i~~~~~p~~~~k~~ 159 (316)
.||-++|+. ....|.+|..+|+.| |=+...|.. +=+.+|+.=..+.|....-..+..+++.-........+.
T Consensus 5 r~~v~~ll~-~~~~G~dW~~LA~~L-g~~~~~I~~i~~~~~~~~~lL~~W~~r~g~~ATv~~L~~aL~~i~R~Di~~~L~ 82 (91)
T 2ib1_A 5 QEEVQRLLM-MGEPAKGWQELAGHL-GYQAEAVETMACDQMPAYTLLRNWAAQEGNRATLRVLEDALAAIGREDVVQVLS 82 (91)
T ss_dssp HHTTHHHHT-TTCCSSTHHHHHHHH-TCCHHHHHHHTTSSCHHHHHHHHTTSSSSSTTSTTHHHHHHHTTTCHHHHHHHT
T ss_pred HHHHHHHhc-CCCCCccHHHHHHHc-CCCHHHHHHHHhcCcHHHHHHHHHHhccCCCCcHHHHHHHHHHcCHHHHHHHHh
Confidence 466677887 355588999999999 777776665 223333332223333455567888888777777777776
Q ss_pred hcCC
Q 021188 160 QNSA 163 (316)
Q Consensus 160 q~~s 163 (316)
....
T Consensus 83 ~~~~ 86 (91)
T 2ib1_A 83 SPAE 86 (91)
T ss_dssp CCCC
T ss_pred cccc
Confidence 5443
No 116
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=47.89 E-value=25 Score=28.03 Aligned_cols=42 Identities=14% Similarity=0.247 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCC--------ChhhhhhcCCC-CC---HHHHHHHHHHHHHHHHH
Q 021188 90 FLILELHSKWGN--------RWSKIAQCLPG-RT---DNEIKNYWRTRVQKQAR 131 (316)
Q Consensus 90 ~~Ll~lv~~~G~--------~W~~IA~~lpg-RT---~~q~knRW~~~l~k~~r 131 (316)
-+|..+|.+.|+ .|..||+.|.- .+ ...+|..|..+|.+..+
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~ 107 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFEC 107 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 456677777774 69999999822 22 46888889888876544
No 117
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=47.31 E-value=4.9 Score=31.99 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC-------CCcchhhcccCCccc---cccccchhccccCC
Q 021188 38 LLTHYIHQHGE-------GRWNMVAKCAGLKRT---GKSCRLRWLNYLKP 77 (316)
Q Consensus 38 ~L~~lV~~~g~-------~~W~~IA~~l~~~Rt---~~qcr~Rw~n~L~p 77 (316)
+|..+|.+.|. +.|.+||..|+...+ +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 47777877762 379999999985432 45677888887764
No 118
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=47.08 E-value=5.8 Score=30.91 Aligned_cols=40 Identities=13% Similarity=0.249 Sum_probs=28.9
Q ss_pred HHHHHHHHhCC-------CCcchhhcccCCccc----cccccchhccccCC
Q 021188 38 LLTHYIHQHGE-------GRWNMVAKCAGLKRT----GKSCRLRWLNYLKP 77 (316)
Q Consensus 38 ~L~~lV~~~g~-------~~W~~IA~~l~~~Rt----~~qcr~Rw~n~L~p 77 (316)
+|..+|.+.|. +.|.+||..|+...+ +.+++..|.++|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677776652 379999999985332 35778889888876
No 119
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=43.72 E-value=18 Score=30.77 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=20.7
Q ss_pred cCCccCCCCHHHHHHHH--------HHHHHhCC
Q 021188 24 QELRRGPWTLEEDTLLT--------HYIHQHGE 48 (316)
Q Consensus 24 ~~lkkg~WT~eED~~L~--------~lV~~~g~ 48 (316)
|.-..|-||+|+|+.|. ++++|||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 56688999999999875 77888874
No 120
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=41.45 E-value=1.3e+02 Score=23.89 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=44.3
Q ss_pred HHHHhcCCChhhhhhcCCCCCHHHHH-----------HHHHHHHHHHHHhcCCCCCchHHHHHHhhhcCChhHHHhhh
Q 021188 94 ELHSKWGNRWSKIAQCLPGRTDNEIK-----------NYWRTRVQKQARQLNIESNSETFFEAVRCYWMPRLLQKMEQ 160 (316)
Q Consensus 94 ~lv~~~G~~W~~IA~~lpgRT~~q~k-----------nRW~~~l~k~~r~~~~~~~e~~~~~~i~~~~~p~~~~k~~q 160 (316)
.+....|..|..+|+.| |=+..+|. .+-..+|+.=..+.|....-..+..++..-.+.....+++.
T Consensus 11 ~Ia~~lG~~Wk~LAR~L-Glse~dId~Ie~~~p~dl~eq~~~mL~~W~~r~G~~ATv~~L~~AL~~i~~~diAe~Ie~ 87 (122)
T 3ezq_B 11 VICDNVGKDWRRLARQL-KVSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKENATVAHLVGALRSCQMNLVADLVQE 87 (122)
T ss_dssp HHHTTCCTTHHHHHHHT-TCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHh-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHCCCHHHHHHHHH
Confidence 34466788999999998 55554433 33444555555566666677778888887777776666654
No 121
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=41.13 E-value=38 Score=25.44 Aligned_cols=70 Identities=11% Similarity=0.192 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCChhhhhhcCCCCCHHHHHH-----------HHHHHHHHHHHhcCCCCCchHHHHHHhhhcCChhHHHh
Q 021188 90 FLILELHSKWGNRWSKIAQCLPGRTDNEIKN-----------YWRTRVQKQARQLNIESNSETFFEAVRCYWMPRLLQKM 158 (316)
Q Consensus 90 ~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~kn-----------RW~~~l~k~~r~~~~~~~e~~~~~~i~~~~~p~~~~k~ 158 (316)
..+..+....|..|..+|++| |=+..+|.. +-..+|+.=..+.+-...-+.+..++..-....+..++
T Consensus 15 ~~~~~ia~~lg~~Wk~Lar~L-g~~~~~I~~I~~~~~~d~~eq~~~mL~~W~~~~g~~At~~~L~~AL~~~~~~~iae~i 93 (99)
T 1fad_A 15 VAFDIVCDNVGRDWKRLAREL-KVSEAKMDGIEEKYPRSLSERVRESLKVWKNAEKKNASVAGLVKALRTCRLNLVADLV 93 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGGGGSHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHc-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHCCcHHHHHHH
Confidence 445556677888999999998 666655533 23334444444445556667788888877777777666
Q ss_pred hh
Q 021188 159 EQ 160 (316)
Q Consensus 159 ~q 160 (316)
+.
T Consensus 94 ~~ 95 (99)
T 1fad_A 94 EE 95 (99)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 122
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=40.45 E-value=6.8 Score=31.58 Aligned_cols=40 Identities=23% Similarity=0.417 Sum_probs=28.5
Q ss_pred HHHHHHHHhCC-------CCcchhhcccCCccc----cccccchhccccCC
Q 021188 38 LLTHYIHQHGE-------GRWNMVAKCAGLKRT----GKSCRLRWLNYLKP 77 (316)
Q Consensus 38 ~L~~lV~~~g~-------~~W~~IA~~l~~~Rt----~~qcr~Rw~n~L~p 77 (316)
+|..+|.+.|. ..|.+||..|+...+ +..++..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777662 379999999985433 35667888888765
No 123
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=40.13 E-value=31 Score=27.85 Aligned_cols=34 Identities=15% Similarity=0.007 Sum_probs=26.7
Q ss_pred HhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 021188 97 SKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQAR 131 (316)
Q Consensus 97 ~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r 131 (316)
...|-...+||+.| |-+...|+++....+++..+
T Consensus 148 ~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 148 FFGDLTHRELAAET-GLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp HHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 34467899999999 88999999988876665543
No 124
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=40.08 E-value=31 Score=27.65 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCC--------ChhhhhhcC--CCC---CHHHHHHHHHHHHHHHHH
Q 021188 90 FLILELHSKWGN--------RWSKIAQCL--PGR---TDNEIKNYWRTRVQKQAR 131 (316)
Q Consensus 90 ~~Ll~lv~~~G~--------~W~~IA~~l--pgR---T~~q~knRW~~~l~k~~r 131 (316)
-+|..+|.+.|+ .|..||..| |.- ....+|.+|..+|-+.-.
T Consensus 45 ~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~ 99 (121)
T 2rq5_A 45 ACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS 99 (121)
T ss_dssp HHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC
Confidence 456777888885 699999998 322 246889999988877654
No 125
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=38.80 E-value=53 Score=26.62 Aligned_cols=34 Identities=9% Similarity=0.018 Sum_probs=26.7
Q ss_pred HhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 021188 97 SKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQAR 131 (316)
Q Consensus 97 ~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r 131 (316)
...|-...+||+.| |-+...|+.+....+++..+
T Consensus 153 ~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 153 ELDGLSYEEIAAIM-DCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp HTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 34467899999999 89999999988776665444
No 126
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.19 E-value=8 Score=31.00 Aligned_cols=40 Identities=23% Similarity=0.473 Sum_probs=27.6
Q ss_pred HHHHHHHHhCC-------CCcchhhcccCCccc---cccccchhccccCC
Q 021188 38 LLTHYIHQHGE-------GRWNMVAKCAGLKRT---GKSCRLRWLNYLKP 77 (316)
Q Consensus 38 ~L~~lV~~~g~-------~~W~~IA~~l~~~Rt---~~qcr~Rw~n~L~p 77 (316)
+|..+|.+.|. ..|.+|+..|+...+ +...|..|.++|.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46777777762 379999999985332 24667777777654
No 127
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=38.09 E-value=1e+02 Score=24.18 Aligned_cols=69 Identities=13% Similarity=0.260 Sum_probs=41.2
Q ss_pred CccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHH---HH--------HHHHHHHHHhcCCCCCchHHHHHHh
Q 021188 79 IKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKN---YW--------RTRVQKQARQLNIESNSETFFEAVR 147 (316)
Q Consensus 79 lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~kn---RW--------~~~l~k~~r~~~~~~~e~~~~~~i~ 147 (316)
+-...=|.+ .|..+....|..|..+|+.| |=+..+|.. .+ ..+|+.=..+.|....-..+..+++
T Consensus 17 ~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~I~~~~p~~l~eq~~qmL~~W~~r~G~~AT~~~L~~AL~ 92 (114)
T 2of5_A 17 ILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLR 92 (114)
T ss_dssp CTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH
T ss_pred hhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 333444444 45566788999999999998 666655533 22 2333333334444556667777776
Q ss_pred hhcC
Q 021188 148 CYWM 151 (316)
Q Consensus 148 ~~~~ 151 (316)
...+
T Consensus 93 ~~~l 96 (114)
T 2of5_A 93 AVEV 96 (114)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 5433
No 128
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=37.50 E-value=1e+02 Score=24.15 Aligned_cols=66 Identities=12% Similarity=0.254 Sum_probs=39.9
Q ss_pred cCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHH---HH--------HHHHHHHHHhcCCCCCchHHHHHHhhh
Q 021188 81 RGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKN---YW--------RTRVQKQARQLNIESNSETFFEAVRCY 149 (316)
Q Consensus 81 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~kn---RW--------~~~l~k~~r~~~~~~~e~~~~~~i~~~ 149 (316)
...=|.+ .|..+....|..|..+|+.| |=+..+|.. .+ ..+|+.=..+.|....-..+..+++.-
T Consensus 19 ~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~I~~~~p~dl~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~ 94 (115)
T 2o71_A 19 NSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAV 94 (115)
T ss_dssp GSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred cCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHc
Confidence 3344444 45566788999999999998 666655433 22 233333333444455666777777654
Q ss_pred c
Q 021188 150 W 150 (316)
Q Consensus 150 ~ 150 (316)
.
T Consensus 95 ~ 95 (115)
T 2o71_A 95 E 95 (115)
T ss_dssp T
T ss_pred C
Confidence 3
No 129
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=35.85 E-value=73 Score=22.04 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHH
Q 021188 84 LTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQ 127 (316)
Q Consensus 84 WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~ 127 (316)
+|+.|-+.| .++ ..|..-..||..+ |-+...|+.+....++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 455555444 444 5677899999999 8899999887665443
No 130
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=35.13 E-value=13 Score=29.78 Aligned_cols=40 Identities=18% Similarity=0.368 Sum_probs=27.7
Q ss_pred HHHHHHHHhCC-------CCcchhhcccCCccc---cccccchhccccCC
Q 021188 38 LLTHYIHQHGE-------GRWNMVAKCAGLKRT---GKSCRLRWLNYLKP 77 (316)
Q Consensus 38 ~L~~lV~~~g~-------~~W~~IA~~l~~~Rt---~~qcr~Rw~n~L~p 77 (316)
+|..+|.+.|. ..|.+||..|+...+ +.+++..|.++|.+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777652 379999999985432 35667778777754
No 131
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=34.93 E-value=69 Score=23.68 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=33.3
Q ss_pred cCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021188 81 RGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQK 128 (316)
Q Consensus 81 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k 128 (316)
....|+.|-+.|.-++ .|..-..||..| |-+...|+.+....+++
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4468888777665444 788899999999 88999999877665543
No 132
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=34.69 E-value=19 Score=27.18 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=26.6
Q ss_pred HHHHHHHhcCC--------ChhhhhhcCCC-C---CHHHHHHHHHHHHHHHH
Q 021188 91 LILELHSKWGN--------RWSKIAQCLPG-R---TDNEIKNYWRTRVQKQA 130 (316)
Q Consensus 91 ~Ll~lv~~~G~--------~W~~IA~~lpg-R---T~~q~knRW~~~l~k~~ 130 (316)
+|..+|.+.|+ .|.+|++.|.- . ....+|..|..+|.+..
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE 91 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYE 91 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 45566666653 69999998722 1 25678888887776543
No 133
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=33.70 E-value=55 Score=23.69 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHh----cCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188 85 TPQEQFLILELHSK----WGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 85 T~EED~~Ll~lv~~----~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~ 129 (316)
++.| ..++.+..- .|-.+..||..+ |-+...|+.+-...+++.
T Consensus 20 ~~~e-r~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 20 SPRE-AMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp CHHH-HHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CHHH-HHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3444 444444443 567899999999 999999998776655544
No 134
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=32.98 E-value=47 Score=27.03 Aligned_cols=43 Identities=9% Similarity=0.019 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 021188 87 QEQFLILELHSKWGN-RWSKIAQCLPGRTDNEIKNYWRTRVQKQA 130 (316)
Q Consensus 87 EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRW~~~l~k~~ 130 (316)
+-|.+|+.+.++-|. .+..||+.+ |-+...|+.|.+.+.+..+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 457888888888774 799999999 9999999999988776554
No 135
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=31.40 E-value=97 Score=23.82 Aligned_cols=41 Identities=20% Similarity=0.074 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188 88 EQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 88 ED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~ 129 (316)
.+..++.++...|-....||..+ |-+...|+.+....+++.
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44555666667788999999999 889999998876655443
No 136
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=31.15 E-value=74 Score=21.56 Aligned_cols=44 Identities=20% Similarity=0.086 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021188 82 GNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQK 128 (316)
Q Consensus 82 g~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k 128 (316)
..+|+.|-+.|.- + ..|..-.+||+.+ |-+...|+.+....+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3567777665554 4 5677899999999 88999999877665543
No 137
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=31.10 E-value=1.3e+02 Score=23.44 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=43.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCcccccccc---chhcc--ccCCCCc----cCCCCHHHHHHHHHHHHh
Q 021188 28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCR---LRWLN--YLKPDIK----RGNLTPQEQFLILELHSK 98 (316)
Q Consensus 28 kg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr---~Rw~n--~L~p~lk----kg~WT~EED~~Ll~lv~~ 98 (316)
....|.++-..++.++. .|. .-.+||+.++ .+...++ .||.. .+.+... ....++++.+.|++++.+
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lg--is~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 105 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLR--VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQ 105 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 45789998888888874 454 6789999987 3333332 23322 1222222 234788888888888866
Q ss_pred cC
Q 021188 99 WG 100 (316)
Q Consensus 99 ~G 100 (316)
.+
T Consensus 106 ~~ 107 (149)
T 1k78_A 106 NP 107 (149)
T ss_dssp CT
T ss_pred Cc
Confidence 43
No 138
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=30.82 E-value=72 Score=22.88 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021188 83 NLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQK 128 (316)
Q Consensus 83 ~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k 128 (316)
.+|+.|-+.|.- + ..|..-.+||+.| |-+...|+.+-...+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467777655544 4 5678899999999 88999999876654443
No 139
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=30.61 E-value=2e+02 Score=22.74 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=42.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccc------cCCCCc----cCCCCHHHHHHHHHHHH
Q 021188 28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNY------LKPDIK----RGNLTPQEQFLILELHS 97 (316)
Q Consensus 28 kg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~------L~p~lk----kg~WT~EED~~Ll~lv~ 97 (316)
..+.|.++-..++.++. .|. ...+||+.++ .+...++ ||.+. +.+... ....+.++.+.|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lg--is~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QGV-RPCDISRQLR--VSHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HTC-CHHHHHHHHT--CCSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34688888888888884 554 6789999987 3433332 33332 222211 23577777888888876
Q ss_pred hc
Q 021188 98 KW 99 (316)
Q Consensus 98 ~~ 99 (316)
+.
T Consensus 98 ~~ 99 (159)
T 2k27_A 98 QN 99 (159)
T ss_dssp HC
T ss_pred HC
Confidence 54
No 140
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=30.48 E-value=1.8e+02 Score=22.07 Aligned_cols=87 Identities=14% Similarity=0.077 Sum_probs=51.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccC------CCCccCCCCHHHHHHHHHHHHhcCC
Q 021188 28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLK------PDIKRGNLTPQEQFLILELHSKWGN 101 (316)
Q Consensus 28 kg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~------p~lkkg~WT~EED~~Ll~lv~~~G~ 101 (316)
....|.++-..++.++. .|. .-.+||+.++ .+...++ ||..... ........+++++..|+.+...-+-
T Consensus 4 ~~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~ 78 (141)
T 1u78_A 4 GSALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCK 78 (141)
T ss_dssp SCCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCC
T ss_pred cccCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCC
Confidence 35678888888877774 454 6789999987 4444443 3322111 1112335788888888877332223
Q ss_pred ChhhhhhcCCC--CCHHHHHH
Q 021188 102 RWSKIAQCLPG--RTDNEIKN 120 (316)
Q Consensus 102 ~W~~IA~~lpg--RT~~q~kn 120 (316)
.=..|+..+ | -+...|..
T Consensus 79 s~~~i~~~l-g~~~s~~tV~r 98 (141)
T 1u78_A 79 TARDIRNEL-QLSASKRTILN 98 (141)
T ss_dssp CHHHHHHHT-TCCSCHHHHHH
T ss_pred CHHHHHHHH-CCCccHHHHHH
Confidence 346777777 3 45555543
No 141
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=30.37 E-value=74 Score=23.51 Aligned_cols=44 Identities=27% Similarity=0.207 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188 83 NLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 83 ~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~ 129 (316)
..|+.|-+.|.- + ..|..-.+||+.| |-+...|+.+....+++.
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 466666665554 4 6778899999999 889999998776655443
No 142
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.20 E-value=96 Score=20.28 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021188 89 QFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQK 128 (316)
Q Consensus 89 D~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k 128 (316)
+..++.+ -..|-.-.+||+.| |-+...|+.+....+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3445555 35577889999999 88999999877665543
No 143
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=28.42 E-value=14 Score=30.41 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCC
Q 021188 34 EEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKP 77 (316)
Q Consensus 34 eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p 77 (316)
+-|.+|++++.+.|.-.|.+||+.+| -+...|+.|..+....
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEED 44 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 45888999999888879999999997 6777788777655443
No 144
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=28.04 E-value=98 Score=25.69 Aligned_cols=41 Identities=10% Similarity=0.065 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 021188 89 QFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQA 130 (316)
Q Consensus 89 D~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~ 130 (316)
+..++.++...|-...+||+.| |-+...|+.+....+++..
T Consensus 192 ~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 192 EKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Confidence 3344444445577899999999 8999999988776555443
No 145
>2gf5_A FADD protein; death domain, death effector domain, apoptosis, death- inducing signaling complex; NMR {Homo sapiens} SCOP: a.77.1.2 a.77.1.4
Probab=27.91 E-value=2.4e+02 Score=23.70 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHH-----------HHHHHHHHHHHhcCCCCCchHHHHHHhhhcCChhHH
Q 021188 88 EQFLILELHSKWGNRWSKIAQCLPGRTDNEIKN-----------YWRTRVQKQARQLNIESNSETFFEAVRCYWMPRLLQ 156 (316)
Q Consensus 88 ED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~kn-----------RW~~~l~k~~r~~~~~~~e~~~~~~i~~~~~p~~~~ 156 (316)
-+..+-.++...|..|..+|++| |=+..+|.. +-..+|+.-..+.|..+.-..+..++..-.......
T Consensus 97 ~~~~~~~ia~~lg~~Wk~Lar~L-gl~~~~I~~I~~~~~~d~~eq~~~mL~~W~~r~g~~At~~~L~~AL~~~~~~diae 175 (191)
T 2gf5_A 97 LCAAFNVICDNVGKDWRRLARQL-KVSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKENATVAHLVGALRSCQMNLVAD 175 (191)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHT-TCCHHHHHHHHHHSSSCSHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHccchhHHHHHHHc-CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcCcHHHHH
Confidence 44556666788899999999998 655554432 233445444555566777778888888777776666
Q ss_pred Hhhh
Q 021188 157 KMEQ 160 (316)
Q Consensus 157 k~~q 160 (316)
+++.
T Consensus 176 ~l~~ 179 (191)
T 2gf5_A 176 LVQE 179 (191)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 146
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=27.82 E-value=33 Score=28.20 Aligned_cols=40 Identities=23% Similarity=0.492 Sum_probs=28.6
Q ss_pred HHHHHHHHhCC-------CCcchhhcccCCccc----cccccchhccccCC
Q 021188 38 LLTHYIHQHGE-------GRWNMVAKCAGLKRT----GKSCRLRWLNYLKP 77 (316)
Q Consensus 38 ~L~~lV~~~g~-------~~W~~IA~~l~~~Rt----~~qcr~Rw~n~L~p 77 (316)
+|..+|.+.|. ..|.+||..|+...+ +.+++..|.++|.|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 46677776662 379999999985332 45678888888876
No 147
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=27.69 E-value=28 Score=28.75 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=27.1
Q ss_pred chhhcccCCccccccccchhccccCCCCccCCCCHHHHHHHHH
Q 021188 52 NMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILE 94 (316)
Q Consensus 52 ~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~ 94 (316)
..||..+. |+|+.+||..+. + ...||+||++.|.+
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 47888887 899999999762 3 33699999988764
No 148
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=26.52 E-value=89 Score=24.16 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=24.9
Q ss_pred HhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188 97 SKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 97 ~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~ 129 (316)
...|-....||+.| |-+...|+.+....+++.
T Consensus 121 ~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 121 LIRGYSYREIATIL-SKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp HTTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34567899999999 889999998877655443
No 149
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=25.68 E-value=1.2e+02 Score=23.95 Aligned_cols=43 Identities=12% Similarity=0.123 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 021188 87 QEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTRVQKQA 130 (316)
Q Consensus 87 EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRW~~~l~k~~ 130 (316)
+-|.+|+.+.++.| -.+..||+.+ |-+...|+.|.+.+.+..+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 44667777777776 4799999999 8899999998887765543
No 150
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=24.47 E-value=1.1e+02 Score=22.43 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHH
Q 021188 86 PQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKN 120 (316)
Q Consensus 86 ~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~kn 120 (316)
.-|...|.++..++|++..+.|+.| |=+...+..
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~r 83 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTA 83 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 4477888899999999999999998 666555543
No 151
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=24.09 E-value=88 Score=21.30 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 021188 86 PQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIES 137 (316)
Q Consensus 86 ~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~ 137 (316)
.-|...|.++...++++..+.|+.| |=+... +.+++++.++.+
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~t--------L~rklkk~gi~~ 60 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSN--------LYRKIKSLNIRV 60 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHH--------HHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHH--------HHHHHHHhCCCC
Confidence 3477888899999999999999988 444433 444455555543
No 152
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=23.70 E-value=93 Score=22.52 Aligned_cols=42 Identities=24% Similarity=0.135 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHH
Q 021188 83 NLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQ 127 (316)
Q Consensus 83 ~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~ 127 (316)
..|+.|-+.|. ++ ..|..-.+||+.| |-+...|+.+....++
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILS 70 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 46666665554 44 5678899999999 8899999987665443
No 153
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=23.31 E-value=51 Score=28.02 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=14.0
Q ss_pred CCCccCCCCHHHHHHHH
Q 021188 77 PDIKRGNLTPQEQFLIL 93 (316)
Q Consensus 77 p~lkkg~WT~EED~~Ll 93 (316)
|.-..|-||+|+|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 45678999999998875
No 154
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=21.36 E-value=1.6e+02 Score=22.12 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=39.0
Q ss_pred cCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 021188 81 RGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETFFEAV 146 (316)
Q Consensus 81 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~~e~~~~~~i 146 (316)
....|+.|-+.|.- + ..|..-.+||+.| |-+...|+.+-...+ ++.+.....+.+..++
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~----~KLgv~~r~elv~~a~ 90 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAM----MKLGVDNDIALLNYLS 90 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHH----HHHTCSSHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHH----HHHCCCCHHHHHHHHH
Confidence 45678888776654 3 3578889999999 889999988665544 3445544333333333
No 155
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=21.16 E-value=1.4e+02 Score=17.77 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHH
Q 021188 83 NLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNY 121 (316)
Q Consensus 83 ~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knR 121 (316)
..++++-..++.++ .-|.....||+.| |-+...|+.+
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~ 41 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVY 41 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHH
Confidence 45677776777665 3477889999998 7777777653
No 156
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=20.49 E-value=1.6e+02 Score=22.64 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188 84 LTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129 (316)
Q Consensus 84 WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~ 129 (316)
+++.+ ..++.++...|..-..||..+ |-+...|+.+....+++.
T Consensus 23 L~~~~-r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kL 66 (113)
T 1s7o_A 23 LTDKQ-MNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKIL 66 (113)
T ss_dssp SCHHH-HHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44544 455556666788999999999 899999998877655443
Done!