Query 021192
Match_columns 316
No_of_seqs 330 out of 3731
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 08:19:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4412 26S proteasome regulat 100.0 3.6E-39 7.8E-44 237.5 10.3 170 8-186 33-202 (226)
2 KOG4412 26S proteasome regulat 100.0 6.5E-35 1.4E-39 215.0 10.9 142 9-160 68-209 (226)
3 PHA02791 ankyrin-like protein; 100.0 6.4E-31 1.4E-35 219.1 14.8 160 10-182 27-220 (284)
4 KOG0509 Ankyrin repeat and DHH 100.0 9.7E-32 2.1E-36 234.0 10.2 167 8-184 73-240 (600)
5 PHA02791 ankyrin-like protein; 100.0 9.9E-30 2.1E-34 212.0 14.2 142 23-179 9-151 (284)
6 PHA02859 ankyrin repeat protei 100.0 8.5E-30 1.8E-34 205.0 13.2 164 10-184 18-187 (209)
7 PHA02878 ankyrin repeat protei 100.0 7.6E-29 1.7E-33 224.7 15.5 167 11-183 35-262 (477)
8 PHA02878 ankyrin repeat protei 100.0 1.2E-28 2.6E-33 223.4 16.0 166 2-179 155-324 (477)
9 PHA02859 ankyrin repeat protei 100.0 2.2E-28 4.7E-33 196.9 15.7 149 9-165 47-202 (209)
10 PHA02875 ankyrin repeat protei 100.0 1.8E-28 3.9E-33 218.8 15.9 126 48-182 102-228 (413)
11 PHA02946 ankyin-like protein; 100.0 4E-28 8.6E-33 216.4 16.8 167 2-177 60-231 (446)
12 PHA02875 ankyrin repeat protei 100.0 2.5E-28 5.5E-33 217.8 15.6 171 2-183 23-195 (413)
13 PHA02874 ankyrin repeat protei 100.0 4.6E-28 1E-32 217.2 16.4 169 3-183 113-282 (434)
14 KOG0509 Ankyrin repeat and DHH 100.0 3.1E-28 6.8E-33 212.2 13.4 157 14-180 45-202 (600)
15 PHA02874 ankyrin repeat protei 100.0 9E-28 1.9E-32 215.3 16.6 167 9-182 31-216 (434)
16 PHA02716 CPXV016; CPX019; EVM0 100.0 5.6E-28 1.2E-32 222.5 15.1 176 2-185 163-395 (764)
17 PHA02716 CPXV016; CPX019; EVM0 100.0 9.6E-28 2.1E-32 221.0 15.6 173 2-180 200-427 (764)
18 PHA03100 ankyrin repeat protei 100.0 1.7E-27 3.7E-32 216.7 15.3 161 10-181 138-308 (480)
19 KOG0508 Ankyrin repeat protein 99.9 3.3E-27 7.1E-32 198.3 14.3 154 12-177 83-236 (615)
20 PHA03100 ankyrin repeat protei 99.9 2.1E-27 4.5E-32 216.1 14.2 171 2-183 94-277 (480)
21 PHA02946 ankyin-like protein; 99.9 5.8E-27 1.3E-31 208.9 15.6 169 2-181 93-268 (446)
22 PHA02795 ankyrin-like protein; 99.9 9.1E-27 2E-31 201.5 14.8 165 9-181 112-287 (437)
23 KOG0508 Ankyrin repeat protein 99.9 1.4E-27 3E-32 200.6 8.8 163 9-180 38-207 (615)
24 PHA02989 ankyrin repeat protei 99.9 2.3E-26 4.9E-31 209.2 16.7 166 2-178 96-311 (494)
25 PHA02876 ankyrin repeat protei 99.9 2.1E-26 4.5E-31 217.4 15.6 163 12-183 306-470 (682)
26 PHA02798 ankyrin-like protein; 99.9 2.1E-26 4.6E-31 209.2 14.9 61 114-179 254-314 (489)
27 PHA02917 ankyrin-like protein; 99.9 3.2E-26 7E-31 211.8 16.0 164 9-178 28-253 (661)
28 PHA03095 ankyrin-like protein; 99.9 2E-26 4.4E-31 209.2 14.4 175 2-184 35-217 (471)
29 PHA02798 ankyrin-like protein; 99.9 3.3E-26 7.2E-31 207.9 15.5 177 2-185 59-287 (489)
30 PHA02989 ankyrin repeat protei 99.9 4.2E-26 9.1E-31 207.5 15.2 177 2-185 58-285 (494)
31 PHA03095 ankyrin-like protein; 99.9 8.4E-26 1.8E-30 205.2 17.1 170 3-179 106-313 (471)
32 PHA02876 ankyrin repeat protei 99.9 3.7E-26 7.9E-31 215.8 14.9 171 4-183 263-436 (682)
33 KOG0512 Fetal globin-inducing 99.9 8.4E-26 1.8E-30 165.8 12.1 146 9-162 59-205 (228)
34 PHA02743 Viral ankyrin protein 99.9 1.5E-25 3.2E-30 173.9 13.8 145 4-157 10-163 (166)
35 KOG0502 Integral membrane anky 99.9 4.1E-26 8.9E-31 173.8 9.8 158 9-179 125-282 (296)
36 KOG0510 Ankyrin repeat protein 99.9 7.6E-26 1.7E-30 201.5 12.3 170 3-182 214-403 (929)
37 PLN03192 Voltage-dependent pot 99.9 1.8E-25 3.9E-30 214.0 15.4 165 8-185 520-684 (823)
38 KOG0514 Ankyrin repeat protein 99.9 7E-26 1.5E-30 184.6 10.7 161 9-180 264-431 (452)
39 PHA02741 hypothetical protein; 99.9 1.9E-24 4E-29 168.5 13.6 128 48-180 21-156 (169)
40 PLN03192 Voltage-dependent pot 99.9 3.4E-24 7.4E-29 205.2 15.4 148 2-161 546-695 (823)
41 KOG0510 Ankyrin repeat protein 99.9 2.3E-24 5E-29 192.1 12.9 166 11-183 185-368 (929)
42 PHA02741 hypothetical protein; 99.9 5.5E-24 1.2E-28 165.8 12.4 131 9-148 17-158 (169)
43 PHA02736 Viral ankyrin protein 99.9 4.1E-24 9E-29 164.3 10.8 132 9-149 13-153 (154)
44 KOG4177 Ankyrin [Cell wall/mem 99.9 2.8E-24 6.2E-29 202.1 11.5 159 12-181 473-631 (1143)
45 KOG0502 Integral membrane anky 99.9 3.2E-24 6.9E-29 163.5 8.6 166 5-183 88-253 (296)
46 PHA02795 ankyrin-like protein; 99.9 6E-23 1.3E-27 177.9 17.0 165 1-180 138-314 (437)
47 PHA02884 ankyrin repeat protei 99.9 3.9E-22 8.4E-27 166.4 21.3 154 10-181 30-187 (300)
48 PHA02743 Viral ankyrin protein 99.9 1.1E-23 2.3E-28 163.5 8.6 140 36-185 9-157 (166)
49 KOG4177 Ankyrin [Cell wall/mem 99.9 2.2E-23 4.7E-28 196.2 9.1 173 2-185 428-602 (1143)
50 KOG0195 Integrin-linked kinase 99.9 9.9E-24 2.2E-28 167.3 5.5 153 18-180 5-157 (448)
51 KOG0505 Myosin phosphatase, re 99.9 1.2E-22 2.6E-27 173.9 12.3 150 9-164 69-273 (527)
52 KOG0505 Myosin phosphatase, re 99.9 6.3E-22 1.4E-26 169.5 13.4 163 11-184 38-259 (527)
53 KOG0512 Fetal globin-inducing 99.9 3.2E-22 6.9E-27 147.1 9.8 120 51-177 66-185 (228)
54 PHA02917 ankyrin-like protein; 99.9 1.1E-21 2.3E-26 181.9 15.0 154 17-181 107-301 (661)
55 PHA02730 ankyrin-like protein; 99.9 1.1E-21 2.3E-26 178.0 14.6 156 16-182 346-524 (672)
56 PHA02730 ankyrin-like protein; 99.9 8.3E-22 1.8E-26 178.8 13.7 168 8-183 36-229 (672)
57 COG1222 RPT1 ATP-dependent 26S 99.9 1.6E-22 3.5E-27 166.3 7.9 104 201-315 146-250 (406)
58 PHA02736 Viral ankyrin protein 99.9 1.4E-22 3.1E-27 155.8 6.9 133 40-180 10-150 (154)
59 PHA02884 ankyrin repeat protei 99.9 1.3E-21 2.9E-26 163.2 12.3 124 43-175 28-156 (300)
60 KOG0195 Integrin-linked kinase 99.9 1.8E-21 4E-26 154.5 9.7 128 10-151 31-162 (448)
61 PTZ00322 6-phosphofructo-2-kin 99.8 1.7E-20 3.6E-25 175.0 15.2 101 51-159 85-192 (664)
62 PF12796 Ank_2: Ankyrin repeat 99.8 1.7E-20 3.7E-25 130.3 10.5 89 52-152 1-89 (89)
63 TIGR00870 trp transient-recept 99.8 1.5E-20 3.2E-25 179.2 13.6 122 48-178 128-279 (743)
64 KOG0733 Nuclear AAA ATPase (VC 99.8 6.2E-21 1.3E-25 166.5 9.4 101 204-315 188-288 (802)
65 TIGR00870 trp transient-recept 99.8 3.3E-20 7.2E-25 176.8 12.3 147 10-166 49-219 (743)
66 PF12796 Ank_2: Ankyrin repeat 99.8 6.2E-20 1.4E-24 127.4 10.4 89 17-115 1-89 (89)
67 COG1223 Predicted ATPase (AAA+ 99.8 3.6E-20 7.8E-25 146.1 7.7 99 203-315 118-216 (368)
68 KOG0507 CASK-interacting adapt 99.8 1.4E-19 3E-24 160.7 12.0 166 9-185 45-218 (854)
69 KOG0507 CASK-interacting adapt 99.8 3.4E-20 7.3E-25 164.6 8.1 227 14-265 4-242 (854)
70 KOG0730 AAA+-type ATPase [Post 99.8 5.7E-20 1.2E-24 162.3 9.4 103 202-315 430-533 (693)
71 KOG0736 Peroxisome assembly fa 99.8 3.1E-20 6.6E-25 166.0 7.2 103 202-315 668-770 (953)
72 KOG0514 Ankyrin repeat protein 99.8 5E-20 1.1E-24 150.7 7.2 145 24-178 237-395 (452)
73 PHA02792 ankyrin-like protein; 99.8 2.1E-19 4.5E-24 161.6 11.4 168 2-178 26-239 (631)
74 KOG0739 AAA+-type ATPase [Post 99.8 6.3E-20 1.4E-24 147.4 6.7 106 198-315 125-231 (439)
75 KOG3676 Ca2+-permeable cation 99.8 2.3E-19 4.9E-24 161.1 10.6 160 10-177 140-330 (782)
76 KOG0733 Nuclear AAA ATPase (VC 99.8 1.6E-19 3.5E-24 157.7 7.1 103 202-315 507-610 (802)
77 PHA02792 ankyrin-like protein; 99.8 4.2E-18 9.1E-23 153.3 14.8 156 14-181 307-478 (631)
78 KOG4214 Myotrophin and similar 99.8 2.2E-18 4.8E-23 113.3 9.1 104 15-125 4-107 (117)
79 cd00204 ANK ankyrin repeats; 99.8 1.1E-17 2.4E-22 123.7 14.0 121 11-141 5-125 (126)
80 KOG0734 AAA+-type ATPase conta 99.8 7.3E-19 1.6E-23 151.5 8.3 102 203-315 301-402 (752)
81 cd00204 ANK ankyrin repeats; 99.8 1E-17 2.2E-22 123.9 12.4 119 48-175 7-125 (126)
82 KOG0738 AAA+-type ATPase [Post 99.8 2.5E-18 5.3E-23 143.0 9.0 101 203-315 209-310 (491)
83 KOG0727 26S proteasome regulat 99.7 3.7E-18 8.1E-23 134.3 7.6 103 202-315 151-254 (408)
84 KOG0731 AAA+-type ATPase conta 99.7 4.4E-18 9.6E-23 154.7 8.5 102 203-315 308-409 (774)
85 CHL00181 cbbX CbbX; Provisiona 99.7 3E-17 6.6E-22 137.6 12.2 116 196-315 12-128 (287)
86 TIGR02881 spore_V_K stage V sp 99.7 3.6E-17 7.8E-22 136.4 12.1 110 202-315 2-111 (261)
87 KOG4214 Myotrophin and similar 99.7 2.9E-17 6.3E-22 108.1 8.4 115 48-175 2-116 (117)
88 COG0465 HflB ATP-dependent Zn 99.7 2E-17 4.3E-22 147.8 8.1 103 202-315 146-248 (596)
89 TIGR02880 cbbX_cfxQ probable R 99.7 1.8E-16 3.8E-21 133.2 12.4 116 196-315 11-127 (284)
90 COG0666 Arp FOG: Ankyrin repea 99.7 3.8E-16 8.3E-21 127.8 13.5 109 48-164 73-189 (235)
91 KOG0729 26S proteasome regulat 99.7 3.3E-17 7.1E-22 130.1 6.7 103 202-315 173-276 (435)
92 COG0464 SpoVK ATPases of the A 99.7 1.6E-16 3.4E-21 144.7 9.3 103 202-315 238-341 (494)
93 COG0666 Arp FOG: Ankyrin repea 99.7 2.8E-15 6.2E-20 122.7 15.2 127 9-145 69-203 (235)
94 KOG0728 26S proteasome regulat 99.7 2.3E-16 5E-21 124.2 7.8 101 204-315 145-246 (404)
95 KOG0651 26S proteasome regulat 99.7 1.2E-16 2.6E-21 129.3 5.9 101 205-315 131-231 (388)
96 KOG0652 26S proteasome regulat 99.7 1.7E-16 3.8E-21 125.6 6.4 103 202-315 167-270 (424)
97 PLN00020 ribulose bisphosphate 99.7 2.6E-16 5.7E-21 132.0 7.8 69 240-315 145-218 (413)
98 KOG0726 26S proteasome regulat 99.7 5.9E-17 1.3E-21 130.1 3.6 103 202-315 181-284 (440)
99 KOG0515 p53-interacting protei 99.6 4.7E-16 1E-20 133.2 8.9 120 16-143 553-673 (752)
100 KOG3676 Ca2+-permeable cation 99.6 8.3E-16 1.8E-20 138.5 10.5 124 12-144 183-330 (782)
101 KOG4369 RTK signaling protein 99.6 3.8E-16 8.2E-21 144.0 6.7 167 6-183 750-919 (2131)
102 KOG0737 AAA+-type ATPase [Post 99.6 4.3E-16 9.3E-21 129.4 6.4 108 198-315 84-192 (386)
103 KOG0735 AAA+-type ATPase [Post 99.6 5.4E-16 1.2E-20 138.1 7.0 102 203-315 664-766 (952)
104 PF13857 Ank_5: Ankyrin repeat 99.6 5.2E-16 1.1E-20 96.9 4.4 50 76-125 7-56 (56)
105 CHL00195 ycf46 Ycf46; Provisio 99.6 2.8E-15 6.1E-20 133.7 10.4 100 203-315 225-324 (489)
106 PF13637 Ank_4: Ankyrin repeat 99.6 2.3E-15 5E-20 93.5 6.4 54 48-105 1-54 (54)
107 PTZ00322 6-phosphofructo-2-kin 99.6 5.1E-15 1.1E-19 138.5 11.5 106 15-126 84-196 (664)
108 PTZ00454 26S protease regulato 99.6 5.8E-15 1.3E-19 129.0 9.9 104 201-315 140-244 (398)
109 KOG1710 MYND Zn-finger and ank 99.6 1.1E-14 2.3E-19 116.1 10.3 121 12-142 11-132 (396)
110 KOG4369 RTK signaling protein 99.6 1.4E-15 3E-20 140.3 5.5 166 10-185 889-1056(2131)
111 TIGR01243 CDC48 AAA family ATP 99.6 5.7E-15 1.2E-19 140.1 9.9 102 203-315 450-552 (733)
112 KOG0515 p53-interacting protei 99.6 5.4E-15 1.2E-19 126.8 8.5 117 52-176 554-672 (752)
113 TIGR01241 FtsH_fam ATP-depende 99.6 6.9E-15 1.5E-19 133.5 9.7 103 202-315 51-153 (495)
114 PF13857 Ank_5: Ankyrin repeat 99.6 2E-15 4.2E-20 94.3 4.0 56 32-92 1-56 (56)
115 PTZ00361 26 proteosome regulat 99.6 1.2E-14 2.7E-19 127.7 10.2 102 203-315 180-282 (438)
116 PF13637 Ank_4: Ankyrin repeat 99.6 7.7E-15 1.7E-19 91.1 6.0 54 85-142 1-54 (54)
117 PRK03992 proteasome-activating 99.6 1.8E-14 3.9E-19 126.5 10.4 102 203-315 128-230 (389)
118 KOG1710 MYND Zn-finger and ank 99.5 2.4E-14 5.3E-19 114.1 8.4 120 48-176 12-132 (396)
119 CHL00176 ftsH cell division pr 99.5 4.9E-14 1.1E-18 129.8 9.9 102 203-315 180-281 (638)
120 KOG0740 AAA+-type ATPase [Post 99.5 1.6E-14 3.6E-19 124.2 6.0 102 203-315 150-251 (428)
121 TIGR03689 pup_AAA proteasome A 99.5 7E-14 1.5E-18 124.7 8.4 110 202-315 178-295 (512)
122 TIGR01242 26Sp45 26S proteasom 99.4 5.2E-13 1.1E-17 116.9 9.2 102 203-315 119-221 (364)
123 TIGR01243 CDC48 AAA family ATP 99.4 1.6E-12 3.5E-17 123.6 9.9 102 203-315 175-277 (733)
124 CHL00206 ycf2 Ycf2; Provisiona 99.4 4.7E-13 1E-17 131.5 5.0 71 238-315 1625-1738(2281)
125 KOG0730 AAA+-type ATPase [Post 99.3 3.1E-12 6.7E-17 113.9 7.8 99 207-315 185-284 (693)
126 PF00004 AAA: ATPase family as 99.3 2.6E-12 5.6E-17 95.9 5.7 63 246-315 1-64 (132)
127 KOG0732 AAA+-type ATPase conta 99.3 4.8E-12 1E-16 119.1 8.3 108 202-315 261-369 (1080)
128 PRK10733 hflB ATP-dependent me 99.3 9.8E-12 2.1E-16 115.9 10.1 104 201-315 147-250 (644)
129 KOG0744 AAA+-type ATPase [Post 99.2 4.9E-11 1.1E-15 97.7 7.5 115 198-315 134-254 (423)
130 KOG0741 AAA+-type ATPase [Post 99.2 4.6E-11 9.9E-16 103.9 6.5 65 232-306 249-313 (744)
131 KOG0783 Uncharacterized conser 99.1 3.3E-11 7.1E-16 109.1 4.7 94 28-126 32-127 (1267)
132 KOG0506 Glutaminase (contains 99.1 4.3E-11 9.4E-16 101.9 5.1 90 12-106 505-594 (622)
133 COG2256 MGS1 ATPase related to 99.1 7.9E-11 1.7E-15 99.5 6.4 62 240-315 45-110 (436)
134 PF05496 RuvB_N: Holliday junc 99.1 1.4E-10 3.1E-15 91.6 6.9 87 203-315 21-107 (233)
135 KOG0818 GTPase-activating prot 99.1 7E-10 1.5E-14 95.1 8.8 89 13-106 133-221 (669)
136 PF13606 Ank_3: Ankyrin repeat 99.1 2.3E-10 5E-15 60.9 3.8 28 85-112 2-29 (30)
137 KOG0818 GTPase-activating prot 99.0 1E-09 2.3E-14 94.0 8.5 85 51-143 136-221 (669)
138 KOG0783 Uncharacterized conser 99.0 1E-10 2.2E-15 106.0 1.9 87 74-164 41-128 (1267)
139 KOG0782 Predicted diacylglycer 99.0 1.4E-09 3.1E-14 94.8 8.3 120 17-144 870-989 (1004)
140 KOG0506 Glutaminase (contains 99.0 4.4E-10 9.5E-15 95.9 5.0 90 48-145 506-596 (622)
141 PF00023 Ank: Ankyrin repeat H 99.0 7.5E-10 1.6E-14 60.8 4.1 30 85-114 2-31 (33)
142 KOG0705 GTPase-activating prot 99.0 1.5E-09 3.3E-14 94.7 7.9 94 51-148 627-720 (749)
143 PF13606 Ank_3: Ankyrin repeat 98.9 1.3E-09 2.7E-14 58.0 3.5 29 47-79 1-29 (30)
144 TIGR00390 hslU ATP-dependent p 98.9 9.5E-09 2E-13 89.0 10.2 89 207-305 13-104 (441)
145 PF00023 Ank: Ankyrin repeat H 98.9 2E-09 4.4E-14 59.0 3.8 33 47-83 1-33 (33)
146 PRK05201 hslU ATP-dependent pr 98.9 6.6E-09 1.4E-13 90.0 8.8 101 200-310 8-112 (443)
147 KOG0522 Ankyrin repeat protein 98.9 5.6E-09 1.2E-13 90.6 7.2 87 15-106 22-109 (560)
148 TIGR02639 ClpA ATP-dependent C 98.9 6.2E-09 1.3E-13 99.0 7.8 74 242-315 202-280 (731)
149 KOG0782 Predicted diacylglycer 98.8 1.4E-08 3.1E-13 88.7 7.2 116 53-177 871-988 (1004)
150 CHL00095 clpC Clp protease ATP 98.8 1.5E-08 3.3E-13 97.5 7.8 75 241-315 198-277 (821)
151 PRK05342 clpX ATP-dependent pr 98.8 6.7E-08 1.5E-12 85.2 10.7 108 198-315 62-179 (412)
152 KOG3609 Receptor-activated Ca2 98.7 4.2E-07 9.1E-12 83.7 15.5 124 13-152 25-161 (822)
153 KOG0705 GTPase-activating prot 98.7 3.5E-08 7.6E-13 86.4 8.1 93 16-112 627-721 (749)
154 KOG0522 Ankyrin repeat protein 98.7 5.5E-08 1.2E-12 84.6 8.5 87 50-142 22-108 (560)
155 COG2255 RuvB Holliday junction 98.7 2.4E-08 5.1E-13 81.0 5.6 58 202-270 22-79 (332)
156 KOG2028 ATPase related to the 98.7 1.8E-08 3.9E-13 84.4 5.0 65 240-315 159-228 (554)
157 TIGR00763 lon ATP-dependent pr 98.7 1.5E-07 3.2E-12 90.3 10.7 91 207-314 321-420 (775)
158 KOG0511 Ankyrin repeat protein 98.6 1.5E-07 3.2E-12 78.6 8.0 53 15-69 38-90 (516)
159 KOG2384 Major histocompatibili 98.6 2.3E-07 5E-12 70.3 7.2 85 37-126 2-87 (223)
160 KOG0736 Peroxisome assembly fa 98.6 8.9E-08 1.9E-12 87.4 5.9 66 243-315 431-496 (953)
161 PRK13342 recombination factor 98.5 2.9E-07 6.3E-12 82.1 8.5 82 204-315 10-98 (413)
162 KOG0989 Replication factor C, 98.5 1.8E-07 3.8E-12 76.8 6.1 70 203-289 33-102 (346)
163 TIGR00382 clpX endopeptidase C 98.5 6.3E-07 1.4E-11 78.7 10.0 110 198-315 68-187 (413)
164 PRK10865 protein disaggregatio 98.5 2.4E-07 5.3E-12 89.4 8.1 73 242-315 198-277 (857)
165 KOG0521 Putative GTPase activa 98.5 1.2E-07 2.6E-12 89.2 5.6 74 85-162 656-729 (785)
166 KOG0521 Putative GTPase activa 98.5 7.3E-08 1.6E-12 90.7 4.0 87 48-142 656-742 (785)
167 PF06309 Torsin: Torsin; Inte 98.5 9.1E-07 2E-11 63.6 8.5 101 206-316 25-127 (127)
168 KOG2384 Major histocompatibili 98.5 4.8E-07 1E-11 68.6 6.9 73 75-151 2-75 (223)
169 TIGR03345 VI_ClpV1 type VI sec 98.5 5.1E-07 1.1E-11 87.0 8.9 74 242-315 207-286 (852)
170 KOG0520 Uncharacterized conser 98.5 1.9E-07 4.1E-12 87.7 5.5 127 9-144 570-702 (975)
171 KOG0511 Ankyrin repeat protein 98.5 6.7E-07 1.5E-11 74.8 7.8 85 49-144 37-121 (516)
172 PRK11034 clpA ATP-dependent Cl 98.4 5.2E-07 1.1E-11 85.4 7.8 74 242-315 206-284 (758)
173 TIGR00635 ruvB Holliday juncti 98.4 6.2E-07 1.3E-11 76.9 7.5 55 204-269 2-56 (305)
174 PRK00080 ruvB Holliday junctio 98.4 1E-06 2.2E-11 76.3 8.8 56 203-269 22-77 (328)
175 KOG0742 AAA+-type ATPase [Post 98.4 5.2E-07 1.1E-11 76.9 5.8 95 205-315 354-449 (630)
176 PRK04195 replication factor C 98.4 2.4E-06 5.1E-11 77.8 10.0 65 203-286 11-75 (482)
177 KOG0743 AAA+-type ATPase [Post 98.4 1.1E-06 2.3E-11 76.2 7.1 95 203-313 198-292 (457)
178 smart00382 AAA ATPases associa 98.4 9.6E-07 2.1E-11 66.2 6.1 69 243-315 2-84 (148)
179 PLN03025 replication factor C 98.4 2.7E-06 6E-11 73.3 9.6 65 204-286 11-75 (319)
180 TIGR03346 chaperone_ClpB ATP-d 98.3 1.2E-06 2.7E-11 84.8 8.0 75 241-315 192-272 (852)
181 PRK14956 DNA polymerase III su 98.3 2.9E-06 6.3E-11 75.5 9.2 52 203-269 15-66 (484)
182 COG1220 HslU ATP-dependent pro 98.3 5.6E-06 1.2E-10 69.1 9.7 90 207-306 16-108 (444)
183 PRK11034 clpA ATP-dependent Cl 98.3 3.1E-06 6.6E-11 80.3 9.3 65 208-286 460-524 (758)
184 PRK14958 DNA polymerase III su 98.3 5.6E-06 1.2E-10 75.4 10.5 52 203-269 13-64 (509)
185 PRK14962 DNA polymerase III su 98.3 6.5E-06 1.4E-10 74.1 10.4 52 203-269 11-62 (472)
186 smart00763 AAA_PrkA PrkA AAA d 98.3 6.4E-06 1.4E-10 70.6 9.7 91 207-307 52-146 (361)
187 PRK14960 DNA polymerase III su 98.3 6.4E-06 1.4E-10 75.7 9.9 52 203-269 12-63 (702)
188 PRK14964 DNA polymerase III su 98.3 7.6E-06 1.7E-10 73.5 10.2 83 203-306 10-109 (491)
189 KOG0520 Uncharacterized conser 98.2 1.7E-06 3.7E-11 81.4 5.9 131 39-178 565-702 (975)
190 PRK14963 DNA polymerase III su 98.2 1.1E-05 2.4E-10 73.3 10.8 53 203-270 11-63 (504)
191 PRK13341 recombination factor 98.2 4.8E-06 1E-10 78.6 8.5 60 242-315 51-115 (725)
192 PRK12402 replication factor C 98.2 7.3E-06 1.6E-10 71.4 9.2 66 204-287 13-78 (337)
193 PRK10787 DNA-binding ATP-depen 98.2 1E-05 2.3E-10 77.3 10.7 99 199-314 314-422 (784)
194 TIGR02639 ClpA ATP-dependent C 98.2 1.2E-05 2.5E-10 77.0 11.0 48 232-286 473-520 (731)
195 PF05673 DUF815: Protein of un 98.2 1.4E-05 3E-10 64.5 9.4 87 204-315 25-112 (249)
196 PRK06645 DNA polymerase III su 98.2 1.6E-05 3.4E-10 72.1 10.4 53 203-270 18-70 (507)
197 PRK12323 DNA polymerase III su 98.2 1.4E-05 2.9E-10 73.5 9.9 52 203-269 13-64 (700)
198 PF06068 TIP49: TIP49 C-termin 98.2 4.3E-06 9.3E-11 71.1 6.3 83 206-305 24-106 (398)
199 KOG0991 Replication factor C, 98.2 3.8E-06 8.3E-11 66.4 5.4 66 203-286 24-89 (333)
200 PRK07003 DNA polymerase III su 98.1 1.8E-05 3.8E-10 73.8 10.1 52 203-269 13-64 (830)
201 TIGR02640 gas_vesic_GvpN gas v 98.1 1.2E-05 2.7E-10 67.1 8.5 45 243-294 21-71 (262)
202 PRK14961 DNA polymerase III su 98.1 2.5E-05 5.4E-10 68.5 10.1 52 203-269 13-64 (363)
203 KOG3609 Receptor-activated Ca2 98.1 5.4E-06 1.2E-10 76.6 5.7 119 50-180 27-155 (822)
204 PRK08691 DNA polymerase III su 98.1 3E-05 6.5E-10 72.0 10.2 53 203-270 13-65 (709)
205 COG1224 TIP49 DNA helicase TIP 98.1 1.1E-05 2.3E-10 67.9 6.5 59 242-306 64-122 (450)
206 cd00009 AAA The AAA+ (ATPases 98.0 2.3E-05 4.9E-10 59.1 7.7 44 242-289 18-61 (151)
207 PRK14949 DNA polymerase III su 98.0 2.4E-05 5.2E-10 74.3 9.2 52 203-270 13-65 (944)
208 PRK08118 topology modulation p 98.0 1.8E-05 3.9E-10 61.3 6.8 25 245-269 3-27 (167)
209 CHL00095 clpC Clp protease ATP 98.0 4.4E-05 9.6E-10 74.0 10.6 50 233-286 529-578 (821)
210 PRK05563 DNA polymerase III su 98.0 4.6E-05 9.9E-10 70.4 10.0 52 203-269 13-64 (559)
211 PRK07994 DNA polymerase III su 98.0 5.6E-05 1.2E-09 70.2 10.5 53 203-270 13-65 (647)
212 PRK14970 DNA polymerase III su 98.0 4.7E-05 1E-09 67.1 9.8 53 203-270 14-66 (367)
213 PHA02544 44 clamp loader, smal 98.0 2.7E-05 5.8E-10 67.2 8.0 61 203-285 18-78 (316)
214 TIGR00764 lon_rel lon-related 98.0 1.1E-05 2.3E-10 75.2 5.7 92 200-311 12-108 (608)
215 PRK14969 DNA polymerase III su 97.9 7.4E-05 1.6E-09 68.5 10.4 52 203-269 13-64 (527)
216 COG0464 SpoVK ATPases of the A 97.9 1.1E-05 2.4E-10 73.9 5.0 67 241-315 16-82 (494)
217 PRK07261 topology modulation p 97.9 3.2E-05 7E-10 60.2 6.9 25 245-269 2-26 (171)
218 PRK07940 DNA polymerase III su 97.9 3.6E-05 7.9E-10 67.7 7.9 61 203-269 2-62 (394)
219 COG0466 Lon ATP-dependent Lon 97.9 3.4E-05 7.4E-10 70.7 7.6 90 208-314 325-423 (782)
220 PF01078 Mg_chelatase: Magnesi 97.9 1.1E-05 2.4E-10 63.6 4.0 47 205-269 2-48 (206)
221 PRK11331 5-methylcytosine-spec 97.9 8.3E-05 1.8E-09 65.7 9.7 73 243-315 194-278 (459)
222 KOG1969 DNA replication checkp 97.9 2E-05 4.3E-10 72.2 5.7 60 236-308 318-378 (877)
223 PRK14951 DNA polymerase III su 97.9 7.2E-05 1.6E-09 69.3 9.5 52 203-269 13-64 (618)
224 TIGR03345 VI_ClpV1 type VI sec 97.9 8.1E-05 1.8E-09 72.1 10.3 48 234-285 587-634 (852)
225 PRK14948 DNA polymerase III su 97.9 8.7E-05 1.9E-09 69.2 10.1 52 203-269 13-64 (620)
226 PRK00440 rfc replication facto 97.9 9.5E-05 2.1E-09 63.8 9.8 50 204-269 15-64 (319)
227 PRK09111 DNA polymerase III su 97.9 7.5E-05 1.6E-09 69.2 9.5 53 203-270 21-73 (598)
228 PRK14955 DNA polymerase III su 97.9 2.4E-05 5.2E-10 69.4 5.8 52 203-269 13-64 (397)
229 COG0542 clpA ATP-binding subun 97.9 7.6E-05 1.6E-09 70.0 9.1 61 225-289 503-563 (786)
230 PRK14965 DNA polymerase III su 97.9 0.00011 2.5E-09 68.1 10.3 52 203-269 13-64 (576)
231 KOG0735 AAA+-type ATPase [Post 97.9 2.3E-05 5E-10 71.5 5.4 71 242-315 430-500 (952)
232 PRK07133 DNA polymerase III su 97.8 0.00015 3.2E-09 68.1 10.4 52 203-269 15-66 (725)
233 PRK14959 DNA polymerase III su 97.8 8.5E-05 1.8E-09 68.5 8.7 52 203-269 13-64 (624)
234 TIGR02397 dnaX_nterm DNA polym 97.8 0.00018 3.9E-09 63.1 10.2 52 203-269 11-62 (355)
235 PF01695 IstB_IS21: IstB-like 97.8 1.6E-05 3.5E-10 62.2 3.1 68 242-314 46-114 (178)
236 KOG2004 Mitochondrial ATP-depe 97.8 0.0001 2.2E-09 67.6 8.2 90 208-314 413-511 (906)
237 PRK08181 transposase; Validate 97.8 3.3E-05 7.2E-10 64.3 4.8 44 243-290 106-149 (269)
238 PRK07764 DNA polymerase III su 97.8 0.00011 2.4E-09 70.6 8.6 52 203-269 12-63 (824)
239 KOG0745 Putative ATP-dependent 97.8 4.7E-05 1E-09 65.8 5.4 59 243-308 226-286 (564)
240 PRK14952 DNA polymerase III su 97.7 4.5E-05 9.8E-10 70.3 5.6 51 203-269 10-61 (584)
241 PRK06647 DNA polymerase III su 97.7 0.00027 5.8E-09 65.3 10.4 52 203-269 13-64 (563)
242 PRK00131 aroK shikimate kinase 97.7 0.00011 2.4E-09 57.4 6.5 28 242-269 3-30 (175)
243 PF07726 AAA_3: ATPase family 97.7 2.7E-05 5.8E-10 56.3 2.6 32 245-283 1-32 (131)
244 TIGR03420 DnaA_homol_Hda DnaA 97.7 0.00021 4.5E-09 58.4 8.1 29 241-269 36-64 (226)
245 TIGR01650 PD_CobS cobaltochela 97.7 5.2E-05 1.1E-09 64.3 4.5 45 243-294 64-110 (327)
246 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00046 9.9E-09 67.3 11.5 49 234-286 586-634 (852)
247 PRK14957 DNA polymerase III su 97.7 7.2E-05 1.6E-09 68.3 5.7 52 203-269 13-64 (546)
248 PRK08116 hypothetical protein; 97.7 9.6E-05 2.1E-09 61.8 6.0 44 243-290 114-157 (268)
249 PF07728 AAA_5: AAA domain (dy 97.7 4.3E-05 9.4E-10 57.3 3.6 32 245-283 1-32 (139)
250 PRK07952 DNA replication prote 97.7 7.4E-05 1.6E-09 61.3 5.1 43 244-290 100-142 (244)
251 PRK14954 DNA polymerase III su 97.7 8.6E-05 1.9E-09 69.0 6.1 52 203-269 13-64 (620)
252 COG1484 DnaC DNA replication p 97.7 7.1E-05 1.5E-09 62.0 5.1 45 242-290 104-148 (254)
253 KOG0741 AAA+-type ATPase [Post 97.7 9.2E-05 2E-09 65.6 5.7 66 240-314 535-603 (744)
254 COG1219 ClpX ATP-dependent pro 97.7 0.00023 5.1E-09 59.2 7.8 57 242-305 96-154 (408)
255 PRK05896 DNA polymerase III su 97.6 0.0001 2.2E-09 67.7 6.2 52 203-269 13-64 (605)
256 PRK06526 transposase; Provisio 97.6 5.1E-05 1.1E-09 62.8 3.8 31 242-272 97-127 (254)
257 PRK09183 transposase/IS protei 97.6 8.1E-05 1.8E-09 62.0 4.9 44 242-289 101-144 (259)
258 PHA02244 ATPase-like protein 97.6 0.00015 3.2E-09 62.5 6.2 35 242-283 118-152 (383)
259 PRK06762 hypothetical protein; 97.6 0.00019 4.2E-09 55.5 6.3 25 244-268 3-27 (166)
260 PRK12377 putative replication 97.6 0.00012 2.6E-09 60.2 5.3 42 244-289 102-143 (248)
261 PF13207 AAA_17: AAA domain; P 97.6 6.7E-05 1.5E-09 54.7 3.4 24 246-269 2-25 (121)
262 PRK10865 protein disaggregatio 97.6 0.00062 1.3E-08 66.3 10.7 41 242-286 597-637 (857)
263 PRK06305 DNA polymerase III su 97.5 0.00016 3.5E-09 65.1 5.9 52 203-269 14-65 (451)
264 PRK08939 primosomal protein Dn 97.5 0.00015 3.1E-09 61.8 5.1 44 242-289 155-198 (306)
265 KOG2505 Ankyrin repeat protein 97.5 0.00088 1.9E-08 58.6 9.7 71 98-176 404-480 (591)
266 KOG1942 DNA helicase, TBP-inte 97.5 0.0003 6.5E-09 57.9 6.5 59 242-306 63-121 (456)
267 COG0703 AroK Shikimate kinase 97.5 8.6E-05 1.9E-09 56.7 3.1 33 244-283 3-35 (172)
268 PRK13947 shikimate kinase; Pro 97.5 0.00032 7E-09 54.6 6.5 25 245-269 3-27 (171)
269 PRK13948 shikimate kinase; Pro 97.5 0.00035 7.5E-09 54.8 6.5 44 241-293 8-51 (182)
270 COG0470 HolB ATPase involved i 97.5 0.0006 1.3E-08 59.0 8.7 59 245-305 26-101 (325)
271 COG2607 Predicted ATPase (AAA+ 97.5 0.0011 2.3E-08 53.2 9.0 70 203-288 57-126 (287)
272 PRK06835 DNA replication prote 97.5 0.00021 4.7E-09 61.3 5.7 43 244-290 184-226 (329)
273 PF07724 AAA_2: AAA domain (Cd 97.5 0.00016 3.4E-09 56.2 4.4 43 243-288 3-45 (171)
274 PF13671 AAA_33: AAA domain; P 97.5 0.00022 4.8E-09 53.7 5.1 24 246-269 2-25 (143)
275 TIGR02902 spore_lonB ATP-depen 97.5 0.00039 8.4E-09 64.0 7.5 66 203-284 62-130 (531)
276 PF00910 RNA_helicase: RNA hel 97.5 0.00024 5.2E-09 50.6 4.9 49 246-294 1-51 (107)
277 PRK14950 DNA polymerase III su 97.5 0.00023 5E-09 66.4 6.0 52 203-269 13-64 (585)
278 COG0606 Predicted ATPase with 97.4 0.00013 2.7E-09 64.2 3.8 49 202-268 175-223 (490)
279 PRK08903 DnaA regulatory inact 97.4 0.00053 1.1E-08 56.1 7.3 28 242-269 41-68 (227)
280 PRK00411 cdc6 cell division co 97.4 0.00053 1.1E-08 61.1 7.9 41 241-283 53-93 (394)
281 cd00464 SK Shikimate kinase (S 97.4 0.00044 9.6E-09 52.7 6.4 24 246-269 2-25 (154)
282 PRK05564 DNA polymerase III su 97.4 0.00066 1.4E-08 58.4 8.0 50 205-269 3-52 (313)
283 CHL00081 chlI Mg-protoporyphyr 97.4 0.00043 9.2E-09 59.8 6.7 60 204-279 15-74 (350)
284 PRK06921 hypothetical protein; 97.4 0.00033 7.1E-09 58.6 5.8 43 242-288 116-159 (266)
285 TIGR00602 rad24 checkpoint pro 97.4 0.00067 1.4E-08 63.2 8.3 55 204-269 82-136 (637)
286 TIGR02903 spore_lon_C ATP-depe 97.4 0.00045 9.8E-09 64.7 7.1 45 242-286 174-221 (615)
287 PRK00149 dnaA chromosomal repl 97.4 0.00019 4.2E-09 64.9 4.5 46 244-291 149-194 (450)
288 PRK14532 adenylate kinase; Pro 97.4 0.00017 3.7E-09 57.1 3.8 25 245-269 2-26 (188)
289 PRK14953 DNA polymerase III su 97.4 0.00033 7.1E-09 63.6 5.9 52 203-269 13-64 (486)
290 KOG1051 Chaperone HSP104 and r 97.4 0.0011 2.5E-08 63.3 9.4 93 207-314 563-665 (898)
291 PRK00625 shikimate kinase; Pro 97.3 0.00031 6.7E-09 54.6 4.6 31 245-282 2-32 (173)
292 PRK13407 bchI magnesium chelat 97.3 0.00041 8.8E-09 59.7 5.6 49 204-268 6-54 (334)
293 PRK08451 DNA polymerase III su 97.3 0.00042 9.1E-09 63.2 5.9 52 203-269 11-62 (535)
294 PRK12422 chromosomal replicati 97.3 0.00035 7.6E-09 62.7 5.2 40 244-287 142-181 (445)
295 smart00248 ANK ankyrin repeats 97.3 0.00046 1E-08 35.4 3.8 22 48-69 2-23 (30)
296 PRK15455 PrkA family serine pr 97.3 0.00074 1.6E-08 61.4 7.1 63 205-283 75-137 (644)
297 TIGR00150 HI0065_YjeE ATPase, 97.3 0.00039 8.6E-09 51.1 4.5 41 243-283 22-62 (133)
298 PRK06893 DNA replication initi 97.3 0.00059 1.3E-08 55.8 6.0 26 244-269 40-65 (229)
299 PRK13949 shikimate kinase; Pro 97.3 0.00032 6.9E-09 54.4 4.2 25 245-269 3-27 (169)
300 PRK13946 shikimate kinase; Pro 97.3 0.00066 1.4E-08 53.5 6.0 27 243-269 10-36 (184)
301 COG0714 MoxR-like ATPases [Gen 97.3 0.00023 5.1E-09 61.6 3.7 36 242-284 42-77 (329)
302 PRK03839 putative kinase; Prov 97.3 0.00025 5.5E-09 55.7 3.5 25 245-269 2-26 (180)
303 TIGR02928 orc1/cdc6 family rep 97.3 0.0023 5E-08 56.4 9.8 29 241-269 38-66 (365)
304 PF03215 Rad17: Rad17 cell cyc 97.3 0.0006 1.3E-08 62.2 6.2 26 244-269 46-71 (519)
305 PLN02200 adenylate kinase fami 97.3 0.00054 1.2E-08 56.1 5.4 29 241-269 41-69 (234)
306 PF14532 Sigma54_activ_2: Sigm 97.3 0.00054 1.2E-08 51.3 5.0 39 242-284 20-58 (138)
307 cd02021 GntK Gluconate kinase 97.3 0.00089 1.9E-08 50.9 6.2 24 246-269 2-25 (150)
308 PRK06217 hypothetical protein; 97.2 0.001 2.2E-08 52.5 6.7 25 245-269 3-27 (183)
309 COG0542 clpA ATP-binding subun 97.2 0.0013 2.7E-08 62.1 8.2 74 241-315 189-268 (786)
310 KOG2170 ATPase of the AAA+ sup 97.2 0.0021 4.5E-08 53.3 8.4 65 200-273 75-140 (344)
311 PF13245 AAA_19: Part of AAA d 97.2 0.0011 2.4E-08 43.8 5.7 23 245-267 12-35 (76)
312 PRK13531 regulatory ATPase Rav 97.2 0.00088 1.9E-08 59.9 6.7 28 242-269 38-65 (498)
313 PF00158 Sigma54_activat: Sigm 97.2 0.0014 3E-08 50.7 7.0 67 242-312 21-99 (168)
314 PF00406 ADK: Adenylate kinase 97.2 0.00045 9.6E-09 52.6 4.1 35 248-291 1-35 (151)
315 COG0563 Adk Adenylate kinase a 97.2 0.00069 1.5E-08 52.9 5.2 23 245-267 2-24 (178)
316 TIGR03574 selen_PSTK L-seryl-t 97.2 0.00087 1.9E-08 55.6 6.1 26 246-271 2-27 (249)
317 PF01583 APS_kinase: Adenylyls 97.2 0.0011 2.4E-08 50.2 5.9 42 245-290 4-45 (156)
318 PF06414 Zeta_toxin: Zeta toxi 97.2 0.0013 2.8E-08 52.6 6.5 68 240-314 12-98 (199)
319 PHA00729 NTP-binding motif con 97.2 0.00038 8.3E-09 56.0 3.4 25 244-268 18-42 (226)
320 cd01428 ADK Adenylate kinase ( 97.1 0.00069 1.5E-08 53.9 4.9 24 246-269 2-25 (194)
321 TIGR00362 DnaA chromosomal rep 97.1 0.00049 1.1E-08 61.5 4.4 45 244-290 137-181 (405)
322 PRK14088 dnaA chromosomal repl 97.1 0.00055 1.2E-08 61.6 4.7 45 244-290 131-175 (440)
323 smart00248 ANK ankyrin repeats 97.1 0.00078 1.7E-08 34.5 3.6 28 85-112 2-29 (30)
324 PTZ00088 adenylate kinase 1; P 97.1 0.00059 1.3E-08 55.6 4.4 28 242-269 5-32 (229)
325 PRK07471 DNA polymerase III su 97.1 0.00099 2.1E-08 58.3 5.9 52 203-269 16-67 (365)
326 cd00227 CPT Chloramphenicol (C 97.1 0.00046 1E-08 54.0 3.5 25 245-269 4-28 (175)
327 cd02019 NK Nucleoside/nucleoti 97.1 0.00055 1.2E-08 44.4 3.3 22 246-267 2-23 (69)
328 PRK14531 adenylate kinase; Pro 97.1 0.00057 1.2E-08 53.9 3.8 26 244-269 3-28 (183)
329 PRK05057 aroK shikimate kinase 97.1 0.0018 4E-08 50.4 6.5 27 243-269 4-30 (172)
330 COG5192 BMS1 GTP-binding prote 97.1 0.0017 3.6E-08 58.2 6.7 73 242-315 68-141 (1077)
331 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00056 1.2E-08 53.9 3.5 24 246-269 2-25 (183)
332 PRK14530 adenylate kinase; Pro 97.0 0.00063 1.4E-08 55.1 3.7 25 245-269 5-29 (215)
333 COG1102 Cmk Cytidylate kinase 97.0 0.00059 1.3E-08 51.2 3.1 24 246-269 3-26 (179)
334 PRK14527 adenylate kinase; Pro 97.0 0.00076 1.6E-08 53.6 4.0 28 242-269 5-32 (191)
335 PLN02674 adenylate kinase 97.0 0.001 2.2E-08 54.5 4.8 28 242-269 30-57 (244)
336 cd02020 CMPK Cytidine monophos 97.0 0.0012 2.6E-08 49.8 5.0 24 246-269 2-25 (147)
337 PRK08084 DNA replication initi 97.0 0.00078 1.7E-08 55.3 4.1 27 243-269 45-71 (235)
338 KOG2505 Ankyrin repeat protein 97.0 0.00084 1.8E-08 58.8 4.3 62 61-126 404-471 (591)
339 PRK00279 adk adenylate kinase; 97.0 0.0011 2.4E-08 53.7 4.9 25 245-269 2-26 (215)
340 KOG3347 Predicted nucleotide k 97.0 0.0023 5E-08 47.3 5.8 60 242-308 6-75 (176)
341 PRK07399 DNA polymerase III su 97.0 0.0018 3.9E-08 55.5 6.1 52 204-270 2-53 (314)
342 cd02027 APSK Adenosine 5'-phos 97.0 0.0028 6.1E-08 48.1 6.6 25 246-270 2-26 (149)
343 PRK14971 DNA polymerase III su 97.0 0.0016 3.4E-08 61.0 6.1 52 203-269 14-65 (614)
344 PRK09112 DNA polymerase III su 97.0 0.0017 3.7E-08 56.5 5.8 53 202-269 19-71 (351)
345 PF13238 AAA_18: AAA domain; P 97.0 0.00078 1.7E-08 49.5 3.3 22 246-267 1-22 (129)
346 COG0529 CysC Adenylylsulfate k 96.9 0.0032 6.9E-08 48.1 6.4 61 241-305 21-88 (197)
347 PRK08233 hypothetical protein; 96.9 0.0018 3.8E-08 50.9 5.4 26 244-269 4-29 (182)
348 PRK11608 pspF phage shock prot 96.9 0.0011 2.4E-08 57.2 4.6 41 242-286 28-68 (326)
349 TIGR00235 udk uridine kinase. 96.9 0.00077 1.7E-08 54.3 3.4 39 241-279 4-44 (207)
350 PLN02459 probable adenylate ki 96.9 0.0017 3.7E-08 53.6 5.3 27 243-269 29-55 (261)
351 TIGR01313 therm_gnt_kin carboh 96.9 0.00074 1.6E-08 52.1 3.1 24 246-269 1-24 (163)
352 COG3854 SpoIIIAA ncharacterize 96.9 0.0033 7.2E-08 50.2 6.6 72 242-314 136-223 (308)
353 PF13173 AAA_14: AAA domain 96.9 0.0022 4.8E-08 47.2 5.4 38 244-286 3-40 (128)
354 PRK06547 hypothetical protein; 96.9 0.00095 2.1E-08 51.9 3.6 28 241-268 13-40 (172)
355 TIGR01351 adk adenylate kinase 96.9 0.0013 2.8E-08 53.1 4.5 24 246-269 2-25 (210)
356 PRK14529 adenylate kinase; Pro 96.9 0.0017 3.8E-08 52.5 5.1 25 245-269 2-26 (223)
357 COG4088 Predicted nucleotide k 96.9 0.00084 1.8E-08 52.5 3.1 26 246-271 4-29 (261)
358 PRK05642 DNA replication initi 96.9 0.003 6.5E-08 51.9 6.4 26 244-269 46-71 (234)
359 PRK06620 hypothetical protein; 96.9 0.00081 1.8E-08 54.3 3.0 25 244-268 45-69 (214)
360 PRK05541 adenylylsulfate kinas 96.9 0.0012 2.7E-08 51.6 3.8 29 241-269 5-33 (176)
361 PRK14528 adenylate kinase; Pro 96.9 0.0012 2.5E-08 52.2 3.7 25 245-269 3-27 (186)
362 PRK13765 ATP-dependent proteas 96.9 0.0013 2.8E-08 61.5 4.4 50 202-269 27-76 (637)
363 PRK02496 adk adenylate kinase; 96.8 0.0011 2.4E-08 52.2 3.5 25 245-269 3-27 (184)
364 PRK08727 hypothetical protein; 96.8 0.0037 8E-08 51.3 6.6 28 244-271 42-69 (233)
365 PRK00889 adenylylsulfate kinas 96.8 0.0049 1.1E-07 48.1 7.0 29 242-270 3-31 (175)
366 PRK14526 adenylate kinase; Pro 96.8 0.002 4.4E-08 51.8 4.8 25 245-269 2-26 (211)
367 PRK15429 formate hydrogenlyase 96.8 0.0098 2.1E-07 57.0 10.0 65 204-286 374-438 (686)
368 PRK03846 adenylylsulfate kinas 96.8 0.0049 1.1E-07 49.2 6.8 29 241-269 22-50 (198)
369 TIGR01618 phage_P_loop phage n 96.8 0.00083 1.8E-08 54.1 2.3 24 241-264 10-33 (220)
370 PF08303 tRNA_lig_kinase: tRNA 96.8 0.0032 7E-08 47.6 5.2 55 249-314 5-60 (168)
371 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0012 2.6E-08 52.1 3.1 25 245-269 5-29 (188)
372 PF02367 UPF0079: Uncharacteri 96.7 0.0015 3.3E-08 47.4 3.0 41 242-282 14-54 (123)
373 PHA02774 E1; Provisional 96.7 0.013 2.7E-07 53.7 9.4 67 244-310 435-508 (613)
374 PRK04040 adenylate kinase; Pro 96.7 0.0016 3.4E-08 51.5 3.3 26 243-268 2-27 (188)
375 PF00485 PRK: Phosphoribulokin 96.7 0.0031 6.7E-08 50.2 5.0 29 246-274 2-30 (194)
376 PRK03731 aroL shikimate kinase 96.7 0.0021 4.5E-08 50.0 3.9 31 245-282 4-34 (171)
377 PRK14086 dnaA chromosomal repl 96.7 0.0022 4.8E-08 59.2 4.6 44 246-291 317-360 (617)
378 COG1936 Predicted nucleotide k 96.7 0.0014 3.1E-08 49.8 2.7 24 245-269 2-25 (180)
379 cd01131 PilT Pilus retraction 96.7 0.0026 5.7E-08 50.8 4.4 24 246-269 4-27 (198)
380 TIGR02974 phageshock_pspF psp 96.7 0.0037 8E-08 54.1 5.6 41 242-286 21-61 (329)
381 PRK09435 membrane ATPase/prote 96.7 0.0038 8.1E-08 53.7 5.6 30 241-270 54-83 (332)
382 COG2812 DnaX DNA polymerase II 96.7 0.0022 4.8E-08 57.9 4.3 54 203-271 13-66 (515)
383 TIGR03575 selen_PSTK_euk L-ser 96.6 0.005 1.1E-07 53.0 6.2 38 246-287 2-40 (340)
384 PF13191 AAA_16: AAA ATPase do 96.6 0.0032 6.9E-08 49.5 4.7 32 239-270 20-51 (185)
385 PF00308 Bac_DnaA: Bacterial d 96.6 0.002 4.3E-08 52.3 3.6 41 245-287 36-76 (219)
386 PRK05480 uridine/cytidine kina 96.6 0.0015 3.3E-08 52.6 2.9 37 242-278 5-43 (209)
387 TIGR00678 holB DNA polymerase 96.6 0.0023 5E-08 50.6 3.7 28 242-269 13-40 (188)
388 PRK08058 DNA polymerase III su 96.6 0.0055 1.2E-07 53.1 6.3 28 242-269 27-54 (329)
389 cd01129 PulE-GspE PulE/GspE Th 96.6 0.0078 1.7E-07 50.3 6.9 72 244-315 81-155 (264)
390 PF13401 AAA_22: AAA domain; P 96.6 0.0021 4.5E-08 47.4 3.2 27 243-269 4-30 (131)
391 TIGR00368 Mg chelatase-related 96.6 0.0025 5.5E-08 58.0 4.2 47 204-268 190-236 (499)
392 PRK10646 ADP-binding protein; 96.6 0.0045 9.9E-08 46.7 4.8 41 243-283 28-68 (153)
393 KOG0990 Replication factor C, 96.6 0.0011 2.4E-08 55.3 1.7 28 242-269 61-88 (360)
394 TIGR03499 FlhF flagellar biosy 96.5 0.017 3.6E-07 48.9 8.7 28 242-269 193-220 (282)
395 PRK10536 hypothetical protein; 96.5 0.0035 7.5E-08 51.5 4.3 57 245-303 76-136 (262)
396 COG1474 CDC6 Cdc6-related prot 96.5 0.0037 7.9E-08 54.7 4.8 42 241-284 40-81 (366)
397 PRK10078 ribose 1,5-bisphospho 96.5 0.0021 4.5E-08 50.8 3.0 24 245-268 4-27 (186)
398 PRK06696 uridine kinase; Valid 96.5 0.0043 9.3E-08 50.6 4.9 31 241-271 20-50 (223)
399 PF06128 Shigella_OspC: Shigel 96.5 0.023 5E-07 45.0 8.5 119 15-147 155-279 (284)
400 PRK05439 pantothenate kinase; 96.5 0.0088 1.9E-07 50.9 6.8 69 241-310 84-166 (311)
401 TIGR02030 BchI-ChlI magnesium 96.5 0.0046 1E-07 53.4 5.2 47 206-268 4-50 (337)
402 TIGR02442 Cob-chelat-sub cobal 96.5 0.0054 1.2E-07 57.9 6.0 47 205-267 3-49 (633)
403 PF13177 DNA_pol3_delta2: DNA 96.5 0.008 1.7E-07 46.3 6.0 31 242-272 18-48 (162)
404 PRK14087 dnaA chromosomal repl 96.5 0.0052 1.1E-07 55.5 5.6 46 244-291 142-187 (450)
405 cd02024 NRK1 Nicotinamide ribo 96.5 0.0022 4.7E-08 50.4 2.8 36 246-281 2-37 (187)
406 PRK15424 propionate catabolism 96.5 0.0048 1E-07 56.7 5.4 69 204-286 217-289 (538)
407 PF13086 AAA_11: AAA domain; P 96.5 0.0025 5.5E-08 52.1 3.3 22 246-267 20-41 (236)
408 TIGR02329 propionate_PrpR prop 96.4 0.0065 1.4E-07 55.8 6.0 65 204-286 210-274 (526)
409 PHA02530 pseT polynucleotide k 96.4 0.0023 5E-08 54.7 3.0 23 245-267 4-26 (300)
410 KOG2035 Replication factor C, 96.4 0.005 1.1E-07 50.5 4.7 32 241-272 32-63 (351)
411 PRK08154 anaerobic benzoate ca 96.4 0.013 2.8E-07 50.3 7.5 35 241-282 131-165 (309)
412 PRK04220 2-phosphoglycerate ki 96.4 0.0082 1.8E-07 50.6 6.0 35 242-276 91-125 (301)
413 PTZ00112 origin recognition co 96.4 0.014 3E-07 56.0 7.9 42 243-284 780-825 (1164)
414 PF13521 AAA_28: AAA domain; P 96.4 0.0026 5.6E-08 49.0 2.8 21 246-266 2-22 (163)
415 COG0802 Predicted ATPase or ki 96.4 0.0058 1.3E-07 45.5 4.4 41 242-282 24-64 (149)
416 PRK13975 thymidylate kinase; P 96.4 0.0055 1.2E-07 48.8 4.7 25 245-269 4-28 (196)
417 TIGR02782 TrbB_P P-type conjug 96.4 0.0043 9.3E-08 52.8 4.2 73 243-315 132-210 (299)
418 TIGR02322 phosphon_PhnN phosph 96.4 0.0029 6.4E-08 49.6 3.0 25 245-269 3-27 (179)
419 COG1618 Predicted nucleotide k 96.4 0.0048 1E-07 46.4 3.8 30 242-271 4-33 (179)
420 PF08433 KTI12: Chromatin asso 96.4 0.01 2.2E-07 49.7 6.2 64 246-313 4-75 (270)
421 TIGR01526 nadR_NMN_Atrans nico 96.4 0.0061 1.3E-07 52.6 5.1 26 244-269 163-188 (325)
422 PF03266 NTPase_1: NTPase; In 96.3 0.0041 8.9E-08 48.1 3.6 25 245-269 1-25 (168)
423 cd03283 ABC_MutS-like MutS-lik 96.3 0.011 2.4E-07 47.2 6.2 24 244-267 26-49 (199)
424 TIGR00750 lao LAO/AO transport 96.3 0.0089 1.9E-07 51.1 5.9 29 241-269 32-60 (300)
425 PRK09376 rho transcription ter 96.3 0.015 3.2E-07 50.8 7.2 27 243-269 169-195 (416)
426 PRK14021 bifunctional shikimat 96.3 0.0098 2.1E-07 55.1 6.5 33 244-283 7-39 (542)
427 cd01120 RecA-like_NTPases RecA 96.3 0.0036 7.9E-08 47.9 3.2 24 246-269 2-25 (165)
428 TIGR00455 apsK adenylylsulfate 96.3 0.02 4.4E-07 45.0 7.4 30 242-271 17-46 (184)
429 PRK09087 hypothetical protein; 96.3 0.013 2.8E-07 47.8 6.4 25 244-268 45-69 (226)
430 COG3842 PotA ABC-type spermidi 96.3 0.0033 7.2E-08 54.1 3.1 27 242-268 30-56 (352)
431 TIGR02237 recomb_radB DNA repa 96.3 0.0095 2.1E-07 48.0 5.6 27 243-269 12-38 (209)
432 PF01745 IPT: Isopentenyl tran 96.3 0.0078 1.7E-07 47.6 4.7 38 246-290 4-41 (233)
433 COG1117 PstB ABC-type phosphat 96.3 0.0058 1.3E-07 48.3 4.0 48 241-288 31-78 (253)
434 PHA02624 large T antigen; Prov 96.3 0.0041 8.9E-08 57.0 3.6 26 244-269 432-457 (647)
435 PRK07667 uridine kinase; Provi 96.3 0.0072 1.6E-07 48.0 4.7 28 244-271 18-45 (193)
436 PRK12339 2-phosphoglycerate ki 96.2 0.0041 8.8E-08 49.5 3.1 26 244-269 4-29 (197)
437 COG3839 MalK ABC-type sugar tr 96.2 0.0034 7.3E-08 53.8 2.8 29 240-268 26-54 (338)
438 COG1855 ATPase (PilT family) [ 96.2 0.0081 1.8E-07 52.7 5.0 32 242-273 262-293 (604)
439 PF12774 AAA_6: Hydrolytic ATP 96.2 0.012 2.6E-07 48.0 5.8 57 243-312 32-89 (231)
440 PRK10820 DNA-binding transcrip 96.2 0.0074 1.6E-07 55.7 5.0 66 203-286 201-266 (520)
441 PRK13894 conjugal transfer ATP 96.2 0.0073 1.6E-07 51.8 4.7 71 242-315 147-225 (319)
442 PRK01184 hypothetical protein; 96.2 0.0044 9.6E-08 48.8 3.2 23 245-268 3-25 (184)
443 PRK09270 nucleoside triphospha 96.2 0.017 3.7E-07 47.3 6.6 29 241-269 31-59 (229)
444 TIGR00554 panK_bact pantothena 96.2 0.028 6.1E-07 47.4 8.0 28 241-268 60-87 (290)
445 cd02022 DPCK Dephospho-coenzym 96.2 0.008 1.7E-07 47.1 4.5 20 246-265 2-21 (179)
446 COG1221 PspF Transcriptional r 96.2 0.017 3.7E-07 50.7 6.8 44 241-287 99-142 (403)
447 TIGR01817 nifA Nif-specific re 96.2 0.0096 2.1E-07 55.3 5.6 64 205-286 195-258 (534)
448 PRK08099 bifunctional DNA-bind 96.2 0.0093 2E-07 52.9 5.3 28 242-269 218-245 (399)
449 COG1126 GlnQ ABC-type polar am 96.2 0.0048 1E-07 48.9 3.0 29 237-265 22-50 (240)
450 KOG1970 Checkpoint RAD17-RFC c 96.2 0.0077 1.7E-07 54.1 4.6 26 244-269 111-136 (634)
451 TIGR00041 DTMP_kinase thymidyl 96.2 0.0059 1.3E-07 48.6 3.7 27 245-271 5-31 (195)
452 PRK13808 adenylate kinase; Pro 96.2 0.008 1.7E-07 51.5 4.7 25 245-269 2-26 (333)
453 PRK13833 conjugal transfer pro 96.1 0.0077 1.7E-07 51.6 4.5 72 243-315 144-221 (323)
454 TIGR03015 pepcterm_ATPase puta 96.1 0.0049 1.1E-07 51.8 3.4 26 244-269 44-69 (269)
455 cd02023 UMPK Uridine monophosp 96.1 0.0049 1.1E-07 49.2 3.2 22 246-267 2-23 (198)
456 cd01130 VirB11-like_ATPase Typ 96.1 0.008 1.7E-07 47.5 4.4 27 242-268 24-50 (186)
457 COG1116 TauB ABC-type nitrate/ 96.1 0.0046 1E-07 50.1 3.0 31 239-269 25-55 (248)
458 PRK12338 hypothetical protein; 96.1 0.0044 9.5E-08 52.7 2.9 28 242-269 3-30 (319)
459 PRK15453 phosphoribulokinase; 96.1 0.007 1.5E-07 50.4 4.0 42 242-283 4-49 (290)
460 TIGR01420 pilT_fam pilus retra 96.1 0.0061 1.3E-07 53.1 3.8 69 244-315 123-201 (343)
461 PRK00300 gmk guanylate kinase; 96.1 0.0057 1.2E-07 49.1 3.4 27 242-268 4-30 (205)
462 PF13604 AAA_30: AAA domain; P 96.1 0.018 3.9E-07 45.8 6.3 27 244-270 19-45 (196)
463 PRK11388 DNA-binding transcrip 96.1 0.0045 9.7E-08 58.8 3.2 41 242-286 347-387 (638)
464 cd01672 TMPK Thymidine monopho 96.1 0.0066 1.4E-07 48.3 3.7 27 246-272 3-29 (200)
465 cd02028 UMPK_like Uridine mono 96.1 0.007 1.5E-07 47.5 3.7 24 246-269 2-25 (179)
466 PF05729 NACHT: NACHT domain 96.1 0.0063 1.4E-07 46.7 3.5 27 245-271 2-28 (166)
467 COG4650 RtcR Sigma54-dependent 96.1 0.016 3.4E-07 48.1 5.8 47 242-289 207-253 (531)
468 PRK09825 idnK D-gluconate kina 96.1 0.0061 1.3E-07 47.6 3.3 25 245-269 5-29 (176)
469 PF13555 AAA_29: P-loop contai 96.1 0.0084 1.8E-07 37.5 3.2 25 245-269 25-49 (62)
470 PRK14730 coaE dephospho-CoA ki 96.1 0.0096 2.1E-07 47.4 4.4 25 245-269 3-27 (195)
471 PF01202 SKI: Shikimate kinase 96.0 0.0045 9.8E-08 47.5 2.4 33 252-293 1-33 (158)
472 PRK04182 cytidylate kinase; Pr 96.0 0.0061 1.3E-07 47.7 3.2 25 245-269 2-26 (180)
473 cd00820 PEPCK_HprK Phosphoenol 96.0 0.0046 1E-07 43.6 2.2 23 242-264 14-36 (107)
474 cd02025 PanK Pantothenate kina 96.0 0.006 1.3E-07 49.5 3.2 23 246-268 2-24 (220)
475 PTZ00301 uridine kinase; Provi 96.0 0.0064 1.4E-07 48.9 3.2 23 246-268 6-28 (210)
476 cd00071 GMPK Guanosine monopho 96.0 0.0054 1.2E-07 45.8 2.7 23 246-268 2-24 (137)
477 PRK14738 gmk guanylate kinase; 96.0 0.0068 1.5E-07 48.7 3.4 26 241-266 11-36 (206)
478 TIGR01663 PNK-3'Pase polynucle 96.0 0.015 3.2E-07 53.3 5.8 27 241-267 367-393 (526)
479 PRK10416 signal recognition pa 96.0 0.02 4.4E-07 49.1 6.4 30 241-270 112-141 (318)
480 PRK06761 hypothetical protein; 96.0 0.0056 1.2E-07 51.3 2.9 26 245-270 5-30 (282)
481 PRK08356 hypothetical protein; 96.0 0.0057 1.2E-07 48.7 2.8 21 245-265 7-27 (195)
482 PRK13900 type IV secretion sys 96.0 0.039 8.4E-07 47.8 8.1 74 242-315 159-241 (332)
483 TIGR02173 cyt_kin_arch cytidyl 96.0 0.0067 1.5E-07 47.0 3.2 24 246-269 3-26 (171)
484 PRK11889 flhF flagellar biosyn 96.0 0.042 9E-07 48.2 8.1 65 242-307 240-317 (436)
485 COG1703 ArgK Putative periplas 96.0 0.014 3.1E-07 48.6 5.1 74 242-315 50-149 (323)
486 PRK14722 flhF flagellar biosyn 96.0 0.019 4.1E-07 50.2 6.1 27 242-268 136-162 (374)
487 TIGR00064 ftsY signal recognit 96.0 0.047 1E-06 45.8 8.3 30 241-270 70-99 (272)
488 cd03115 SRP The signal recogni 95.9 0.0084 1.8E-07 46.7 3.6 26 246-271 3-28 (173)
489 TIGR02524 dot_icm_DotB Dot/Icm 95.9 0.011 2.4E-07 51.6 4.6 72 244-315 135-218 (358)
490 TIGR02525 plasmid_TraJ plasmid 95.9 0.0093 2E-07 52.2 4.0 71 245-315 151-231 (372)
491 cd01124 KaiC KaiC is a circadi 95.9 0.0087 1.9E-07 47.2 3.6 24 246-269 2-25 (187)
492 PF03308 ArgK: ArgK protein; 95.9 0.0051 1.1E-07 50.3 2.2 27 243-269 29-55 (266)
493 PF01591 6PF2K: 6-phosphofruct 95.9 0.0097 2.1E-07 48.0 3.8 31 242-272 11-41 (222)
494 TIGR03263 guanyl_kin guanylate 95.9 0.0061 1.3E-07 47.8 2.6 24 246-269 4-27 (180)
495 cd01918 HprK_C HprK/P, the bif 95.9 0.004 8.6E-08 46.8 1.4 56 243-303 14-69 (149)
496 COG0645 Predicted kinase [Gene 95.9 0.025 5.4E-07 43.1 5.6 24 246-269 4-27 (170)
497 PRK10751 molybdopterin-guanine 95.8 0.013 2.9E-07 45.3 4.2 30 242-271 5-34 (173)
498 PRK05707 DNA polymerase III su 95.8 0.0088 1.9E-07 51.6 3.5 30 241-270 20-49 (328)
499 TIGR01425 SRP54_euk signal rec 95.8 0.067 1.4E-06 47.7 9.0 31 241-271 98-128 (429)
500 KOG2680 DNA helicase TIP49, TB 95.8 0.005 1.1E-07 51.1 1.8 59 242-306 65-123 (454)
No 1
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-39 Score=237.48 Aligned_cols=170 Identities=28% Similarity=0.382 Sum_probs=155.9
Q ss_pred cCCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCCh
Q 021192 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (316)
Q Consensus 8 ~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (316)
+.+.+|.|||||||..|+.+++.+|+...+..+|..|+. |+||||.|+..|+.++|+.|+.+ .++|+|..++.|+|
T Consensus 33 r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDda-GWtPlhia~s~g~~evVk~Ll~r---~~advna~tn~G~T 108 (226)
T KOG4412|consen 33 RDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDA-GWTPLHIAASNGNDEVVKELLNR---SGADVNATTNGGQT 108 (226)
T ss_pred cccccCCceeeeeeecCchhHHHHHHhcCCCCCCCcccc-CCchhhhhhhcCcHHHHHHHhcC---CCCCcceecCCCcc
Confidence 345689999999999999999999998888889999887 99999999999999999999994 59999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCC
Q 021192 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (316)
Q Consensus 88 ~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~ 167 (316)
|||||+..|+.+++++|++.|+.++++|..|.||||-|+ ..|..+++++|+..|+.+|.+|..|+||||++.+.+
T Consensus 109 ~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAA----avGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~- 183 (226)
T KOG4412|consen 109 CLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAA----AVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEG- 183 (226)
T ss_pred eehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHH----hccchhhHHHHHhcCCCCCcccccCccHHHHHHhcc-
Confidence 999999999999999999999999999999999999999 899999999999999999999999999999885544
Q ss_pred hHHHHHHHHHhHHHHHHHh
Q 021192 168 SAKLRELLLWHSEEQRKRR 186 (316)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~~ 186 (316)
+.++..+|.+++++....+
T Consensus 184 ~~d~a~lLV~~gAd~~~ed 202 (226)
T KOG4412|consen 184 HPDVAVLLVRAGADTDRED 202 (226)
T ss_pred CchHHHHHHHhccceeecc
Confidence 7788888888886654433
No 2
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-35 Score=215.04 Aligned_cols=142 Identities=30% Similarity=0.385 Sum_probs=136.1
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
.|..||||||.||..|+.++|+.|+.+.+.++|..... |.||||||+.+|..+|+++|++ .|+.++++|..|.||
T Consensus 68 kDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~-G~T~LHyAagK~r~eIaqlLle----~ga~i~~kD~~~qtp 142 (226)
T KOG4412|consen 68 KDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNG-GQTCLHYAAGKGRLEIAQLLLE----KGALIRIKDKQGQTP 142 (226)
T ss_pred ccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCC-CcceehhhhcCChhhHHHHHHh----cCCCCcccccccCch
Confidence 48899999999999999999999998889999999987 9999999999999999999999 889999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccc
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~ 160 (316)
||-|+.-|..+++++|+..|+.+|.+|.+|+||||.|. -.++.+...+|+++||+....|+.| ||+.
T Consensus 143 lHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al----~e~~~d~a~lLV~~gAd~~~edke~-t~~~ 209 (226)
T KOG4412|consen 143 LHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHAL----AEGHPDVAVLLVRAGADTDREDKEG-TALR 209 (226)
T ss_pred hHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHH----hccCchHHHHHHHhccceeeccccC-chHH
Confidence 99999999999999999999999999999999999996 5789999999999999999999988 9983
No 3
>PHA02791 ankyrin-like protein; Provisional
Probab=99.97 E-value=6.4e-31 Score=219.09 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=80.6
Q ss_pred CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHH
Q 021192 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (316)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L 89 (316)
+..|.||||+|+..|+.++++.|+ +.+++++..+ |.||||+|+..|+.+++++|++ .|++++.+|..|+|||
T Consensus 27 D~~G~TpLh~Aa~~g~~eiv~~Ll-~~ga~~n~~d---~~TpLh~Aa~~g~~eiV~lLL~----~Gadvn~~d~~G~TpL 98 (284)
T PHA02791 27 DVHGHSALYYAIADNNVRLVCTLL-NAGALKNLLE---NEFPLHQAATLEDTKIVKILLF----SGMDDSQFDDKGNTAL 98 (284)
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHH-HCcCCCcCCC---CCCHHHHHHHCCCHHHHHHHHH----CCCCCCCCCCCCCCHH
Confidence 344555555555555555555444 2333433332 3455555555555555555554 4444555555555555
Q ss_pred HHHHHcCCHHHHHHHHhcCCCccccccC---------------------------------CCcHHHHHhhhhhccCcHH
Q 021192 90 HMAAKNGCNEAAKLLLAHGAFIEAKANN---------------------------------GMTPLHLSVWYSIRSEDYA 136 (316)
Q Consensus 90 h~a~~~~~~~~~~~Ll~~g~~~~~~~~~---------------------------------g~t~L~~a~~~~~~~~~~~ 136 (316)
|+|+..|+.+++++|++.|++++..+.. |.||||+|+ ..|+.+
T Consensus 99 h~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa----~~g~~e 174 (284)
T PHA02791 99 YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITI----KNGHVD 174 (284)
T ss_pred HHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHH----HcCCHH
Confidence 5555555555555555555544444443 455555555 555556
Q ss_pred HHHHHHhcCCCCCCCCCCCCCc-cccccCCCChHHHHHHHHHhHHHH
Q 021192 137 TVKTLLEYNADCSAKDNEGKTP-LDHLSNGPGSAKLRELLLWHSEEQ 182 (316)
Q Consensus 137 ~~~~Ll~~ga~~~~~~~~g~tp-l~~~a~~~~~~~~~~lL~~~~~~~ 182 (316)
++++|+++|++++.+|..|.|| ||+|+. .+..+++++|+.+|++.
T Consensus 175 iv~lLL~~gAd~n~~d~~g~t~~L~~Aa~-~~~~e~v~lLl~~Ga~i 220 (284)
T PHA02791 175 MMILLLDYMTSTNTNNSLLFIPDIKLAID-NKDLEMLQALFKYDINI 220 (284)
T ss_pred HHHHHHHCCCCCCcccCCCCChHHHHHHH-cCCHHHHHHHHHCCCCC
Confidence 6666666666666555555554 533333 33445555555555443
No 4
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.97 E-value=9.7e-32 Score=233.96 Aligned_cols=167 Identities=29% Similarity=0.358 Sum_probs=153.3
Q ss_pred cCCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCCh
Q 021192 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (316)
Q Consensus 8 ~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (316)
+.|..|.|+|||||.+++++++++|+ ++++++|..+...+.||||||+++|+..+|++|++ +|+|++.+|.+|.|
T Consensus 73 ~~D~~g~tlLHWAAiNNrl~v~r~li-~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlq----hGAdpt~~D~~G~~ 147 (600)
T KOG0509|consen 73 NPDREGVTLLHWAAINNRLDVARYLI-SHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQ----HGADPTLKDKQGLT 147 (600)
T ss_pred CCCcCCccceeHHHHcCcHHHHHHHH-HcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHH----cCCCCceecCCCCc
Confidence 45779999999999999999999988 68899999997779999999999999999999999 89999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCC-CCCCCccccccCCC
Q 021192 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPLDHLSNGP 166 (316)
Q Consensus 88 ~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~~a~~~ 166 (316)
|||.|++.++.-.+-+|+..|+|+|.+|.+|+||||+|+ .+++...++.|+..|+++...| .+|.||||.|+..+
T Consensus 148 ~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAa----ykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~g 223 (600)
T KOG0509|consen 148 PLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAA----YKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGG 223 (600)
T ss_pred HHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHH----HhcccHHHHHHHHhcccccccccccCCchHHHHHhcC
Confidence 999999999999999999999999999999999999999 7777777999999999999998 89999999999888
Q ss_pred ChHHHHHHHHHhHHHHHH
Q 021192 167 GSAKLRELLLWHSEEQRK 184 (316)
Q Consensus 167 ~~~~~~~lL~~~~~~~~~ 184 (316)
+...+. ++++.+++...
T Consensus 224 N~~~v~-Ll~~g~~~~d~ 240 (600)
T KOG0509|consen 224 NLTAVK-LLLEGGADLDK 240 (600)
T ss_pred CcceEe-hhhhcCCcccc
Confidence 877777 77777655443
No 5
>PHA02791 ankyrin-like protein; Provisional
Probab=99.97 E-value=9.9e-30 Score=211.98 Aligned_cols=142 Identities=20% Similarity=0.116 Sum_probs=121.8
Q ss_pred cCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHH
Q 021192 23 SGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK 102 (316)
Q Consensus 23 ~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~ 102 (316)
.++.+.+++|++ .++ +..|.. |.||||+|+..|+.+++++|++ .+++++.++ |+||||+|+..|+.++++
T Consensus 9 ~~~~~~~~~Lis-~~a--~~~D~~-G~TpLh~Aa~~g~~eiv~~Ll~----~ga~~n~~d--~~TpLh~Aa~~g~~eiV~ 78 (284)
T PHA02791 9 WKSKQLKSFLSS-KDA--FKADVH-GHSALYYAIADNNVRLVCTLLN----AGALKNLLE--NEFPLHQAATLEDTKIVK 78 (284)
T ss_pred cCHHHHHHHHHh-CCC--CCCCCC-CCcHHHHHHHcCCHHHHHHHHH----CcCCCcCCC--CCCHHHHHHHCCCHHHHH
Confidence 356777787775 555 356655 9999999999999999999999 677777764 789999999999999999
Q ss_pred HHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCC-CccccccCCCChHHHHHHHHHhH
Q 021192 103 LLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGK-TPLDHLSNGPGSAKLRELLLWHS 179 (316)
Q Consensus 103 ~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~-tpl~~~a~~~~~~~~~~lL~~~~ 179 (316)
+|++.|++++.+|..|+||||+|+ ..++.+++++|+++|++++.++..|+ ||||+|+..+ ..+++++|+.++
T Consensus 79 lLL~~Gadvn~~d~~G~TpLh~Aa----~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g-~~eivk~LL~~~ 151 (284)
T PHA02791 79 ILLFSGMDDSQFDDKGNTALYYAV----DSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN-DVSIVSYFLSEI 151 (284)
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcC-CHHHHHHHHhcC
Confidence 999999999999999999999999 89999999999999999999999885 8997676654 556666676654
No 6
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.97 E-value=8.5e-30 Score=205.05 Aligned_cols=164 Identities=16% Similarity=0.165 Sum_probs=141.3
Q ss_pred CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhC--CCHHHHHHHHcCCCCCcccccccc-CCCC
Q 021192 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY--NKAEIVKSLLEWPGNDKVELEAQN-MYGE 86 (316)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~ 86 (316)
.+.++||||.|+..|+.+.|+.|+.. ++..+.. |.||||+|+.. ++.+++++|++ .|++++.++ ..|+
T Consensus 18 ~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~-g~TpLh~a~~~~~~~~eiv~~Ll~----~gadvn~~~~~~g~ 88 (209)
T PHA02859 18 FYRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDL-YETPIFSCLEKDKVNVEILKFLIE----NGADVNFKTRDNNL 88 (209)
T ss_pred hhccCcHHHHHHHhCcHHHHHHHHHh----hhccCcc-CCCHHHHHHHcCCCCHHHHHHHHH----CCCCCCccCCCCCC
Confidence 45679999999999999999999853 4556665 99999999975 48999999999 899999997 5899
Q ss_pred hHHHHHHHc---CCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCcccccc
Q 021192 87 TPLHMAAKN---GCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 163 (316)
Q Consensus 87 t~Lh~a~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a 163 (316)
||||+|+.. ++.+++++|+++|+++|.+|..|.||||+|+.. ..++.+++++|+++|++++.+|..|.||||.++
T Consensus 89 TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~--~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a 166 (209)
T PHA02859 89 SALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCN--FNVRINVIKLLIDSGVSFLNKDFDNNNILYSYI 166 (209)
T ss_pred CHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh--ccCCHHHHHHHHHcCCCcccccCCCCcHHHHHH
Confidence 999998764 479999999999999999999999999998721 246899999999999999999999999997666
Q ss_pred CCCChHHHHHHHHHhHHHHHH
Q 021192 164 NGPGSAKLRELLLWHSEEQRK 184 (316)
Q Consensus 164 ~~~~~~~~~~lL~~~~~~~~~ 184 (316)
...+..+++++|.++|.+...
T Consensus 167 ~~~~~~~iv~~Ll~~Gadi~~ 187 (209)
T PHA02859 167 LFHSDKKIFDFLTSLGIDINE 187 (209)
T ss_pred HhcCCHHHHHHHHHcCCCCCC
Confidence 666778888999988865443
No 7
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.96 E-value=7.6e-29 Score=224.71 Aligned_cols=167 Identities=24% Similarity=0.290 Sum_probs=120.7
Q ss_pred CCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCC------------------
Q 021192 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG------------------ 72 (316)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~------------------ 72 (316)
..+.||||+|+..|+.++|+.|+ +.|+++|.++.. |.||||+||..|+.+++++|++...
T Consensus 35 ~~~~tPLh~A~~~g~~e~vk~Ll-~~gadvn~~d~~-g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~ 112 (477)
T PHA02878 35 LIPFIPLHQAVEARNLDVVKSLL-TRGHNVNQPDHR-DLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNR 112 (477)
T ss_pred ccCcchHHHHHHcCCHHHHHHHH-HCCCCCCCCCCC-CCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcC
Confidence 35677888888888888888777 456777777765 8888888877655443333332100
Q ss_pred ------------------------------------------CCccccccccCC-CChHHHHHHHcCCHHHHHHHHhcCC
Q 021192 73 ------------------------------------------NDKVELEAQNMY-GETPLHMAAKNGCNEAAKLLLAHGA 109 (316)
Q Consensus 73 ------------------------------------------~~~~~~~~~~~~-g~t~Lh~a~~~~~~~~~~~Ll~~g~ 109 (316)
+.|++++.+|.. |+||||+|+..|+.+++++|++.|+
T Consensus 113 ~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~ga 192 (477)
T PHA02878 113 NVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGA 192 (477)
T ss_pred CHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCC
Confidence 046667777777 8888888888888888888888888
Q ss_pred CccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhHHHHH
Q 021192 110 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 110 ~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~ 183 (316)
+++..|..|.||||+|+ ..++.+++++|++.|++++.+|..|+||||+|+...+..+++++|.++|++..
T Consensus 193 d~n~~d~~g~tpLh~A~----~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn 262 (477)
T PHA02878 193 NVNIPDKTNNSPLHHAV----KHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN 262 (477)
T ss_pred CCCCcCCCCCCHHHHHH----HhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence 88888888888888888 77778888888888888888888888888776655556677777777765543
No 8
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.96 E-value=1.2e-28 Score=223.40 Aligned_cols=166 Identities=27% Similarity=0.331 Sum_probs=145.9
Q ss_pred CCcccccC-CCC-ChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccc
Q 021192 2 QKNQDRRS-RSA-KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79 (316)
Q Consensus 2 ~~~~~~~~-~~~-~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 79 (316)
+.|++.+. +.. |.||||+||..|+.++++.|+ +.+++++.++.. |.||||+|+..|+.+++++|++ .|++++
T Consensus 155 ~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll-~~gad~n~~d~~-g~tpLh~A~~~~~~~iv~~Ll~----~ga~in 228 (477)
T PHA02878 155 SYGADINMKDRHKGNTALHYATENKDQRLTELLL-SYGANVNIPDKT-NNSPLHHAVKHYNKPIVHILLE----NGASTD 228 (477)
T ss_pred HcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHH-HCCCCCCCcCCC-CCCHHHHHHHhCCHHHHHHHHH----cCCCCC
Confidence 35666664 445 999999999999999999888 578999999876 9999999999999999999999 889999
Q ss_pred cccCCCChHHHHHHHc-CCHHHHHHHHhcCCCcccccc-CCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCC
Q 021192 80 AQNMYGETPLHMAAKN-GCNEAAKLLLAHGAFIEAKAN-NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKT 157 (316)
Q Consensus 80 ~~~~~g~t~Lh~a~~~-~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~t 157 (316)
.+|..|+||||+|+.. ++.+++++|+++|++++..+. .|.||||+|+ ++.+++++|+++|+|++.+|..|.|
T Consensus 229 ~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~------~~~~~v~~Ll~~gadin~~d~~g~T 302 (477)
T PHA02878 229 ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSI------KSERKLKLLLEYGADINSLNSYKLT 302 (477)
T ss_pred CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHc------cCHHHHHHHHHCCCCCCCcCCCCCC
Confidence 9999999999999975 789999999999999999886 7999999996 4678999999999999999999999
Q ss_pred ccccccCCCChHHHHHHHHHhH
Q 021192 158 PLDHLSNGPGSAKLRELLLWHS 179 (316)
Q Consensus 158 pl~~~a~~~~~~~~~~lL~~~~ 179 (316)
|||+|+.......+.++|..+.
T Consensus 303 pL~~A~~~~~~~~~~~~li~~~ 324 (477)
T PHA02878 303 PLSSAVKQYLCINIGRILISNI 324 (477)
T ss_pred HHHHHHHHcCccchHHHHHHHH
Confidence 9988876554555666666543
No 9
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.96 E-value=2.2e-28 Score=196.87 Aligned_cols=149 Identities=19% Similarity=0.200 Sum_probs=131.4
Q ss_pred CCCCChhhHHHHHhcC--CHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhC---CCHHHHHHHHcCCCCCccccccccC
Q 021192 9 SRSAKPATIHGCAQSG--DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNM 83 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~ 83 (316)
.+..|.||||+|+..+ +.++++.|+ +.++++|.++...|.||||+|+.. ++.+++++|++ .|++++.+|.
T Consensus 47 ~~~~g~TpLh~a~~~~~~~~eiv~~Ll-~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~----~gadin~~d~ 121 (209)
T PHA02859 47 CNDLYETPIFSCLEKDKVNVEILKFLI-ENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILID----SGSSITEEDE 121 (209)
T ss_pred cCccCCCHHHHHHHcCCCCHHHHHHHH-HCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHH----CCCCCCCcCC
Confidence 4678999999999854 899999888 678999998754499999998754 57999999999 8999999999
Q ss_pred CCChHHHHHHH--cCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCcccc
Q 021192 84 YGETPLHMAAK--NGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161 (316)
Q Consensus 84 ~g~t~Lh~a~~--~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 161 (316)
.|.||||+|+. .++.+++++|++.|++++.+|..|.||||.++. ..++.+++++|+++|++++.+|..|+|||++
T Consensus 122 ~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~---~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~l 198 (209)
T PHA02859 122 DGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYIL---FHSDKKIFDFLTSLGIDINETNKSGYNCYDL 198 (209)
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHH---hcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 99999999876 468999999999999999999999999996432 5678999999999999999999999999977
Q ss_pred ccCC
Q 021192 162 LSNG 165 (316)
Q Consensus 162 ~a~~ 165 (316)
|+..
T Consensus 199 a~~~ 202 (209)
T PHA02859 199 IKFR 202 (209)
T ss_pred Hhhh
Confidence 6543
No 10
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.96 E-value=1.8e-28 Score=218.76 Aligned_cols=126 Identities=25% Similarity=0.326 Sum_probs=76.9
Q ss_pred CCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhh
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~ 127 (316)
|.||||+|+..|+.+++++|++ .|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 102 g~tpL~~A~~~~~~~iv~~Ll~----~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~- 176 (413)
T PHA02875 102 GMTPLHLATILKKLDIMKLLIA----RGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAM- 176 (413)
T ss_pred CCCHHHHHHHhCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHH-
Confidence 5666666666666666666666 55666666666666666666666666666666666666666666666666666
Q ss_pred hhhccCcHHHHHHHHhcCCCCCCCCCCCC-CccccccCCCChHHHHHHHHHhHHHH
Q 021192 128 YSIRSEDYATVKTLLEYNADCSAKDNEGK-TPLDHLSNGPGSAKLRELLLWHSEEQ 182 (316)
Q Consensus 128 ~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~-tpl~~~a~~~~~~~~~~lL~~~~~~~ 182 (316)
..|+.+++++|+++|++++..+..|. ||+|+|+ ..+..+++++|.++|++.
T Consensus 177 ---~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~-~~~~~~iv~~Ll~~gad~ 228 (413)
T PHA02875 177 ---AKGDIAICKMLLDSGANIDYFGKNGCVAALCYAI-ENNKIDIVRLFIKRGADC 228 (413)
T ss_pred ---HcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHH-HcCCHHHHHHHHHCCcCc
Confidence 55666666666666666666665554 4443233 334455555666555543
No 11
>PHA02946 ankyin-like protein; Provisional
Probab=99.96 E-value=4e-28 Score=216.41 Aligned_cols=167 Identities=17% Similarity=0.194 Sum_probs=130.0
Q ss_pred CCcccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCC--CHHHHHHHHcCCCCCcccc
Q 021192 2 QKNQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVEL 78 (316)
Q Consensus 2 ~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~ 78 (316)
++|.+.+. +..|.||||+||..|+.++|+.|+ +.|+++|.+|.. |.||||+|+..+ ..+++++|++ .|+++
T Consensus 60 ~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL-~~GAdin~~d~~-g~TpLh~A~~~~~~~~e~v~lLl~----~Gadi 133 (446)
T PHA02946 60 HRGYSPNETDDDGNYPLHIASKINNNRIVAMLL-THGADPNACDKQ-HKTPLYYLSGTDDEVIERINLLVQ----YGAKI 133 (446)
T ss_pred HCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-HCcCCCCCCCCC-CCCHHHHHHHcCCchHHHHHHHHH----cCCCc
Confidence 45667664 678999999999999999999888 578999999877 999999998765 4789999999 67777
Q ss_pred cc-ccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCC
Q 021192 79 EA-QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKT 157 (316)
Q Consensus 79 ~~-~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~t 157 (316)
+. .|..|.|||| |+..++.+++++|++.|++++..|..|+||||+|+.. ..++.+++++|+++|++++.+|..|+|
T Consensus 134 n~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~--~~~~~~~v~~Ll~~Gadin~~d~~G~T 210 (446)
T PHA02946 134 NNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMS--DNPKASTISWMMKLGISPSKPDHDGNT 210 (446)
T ss_pred ccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHh--cCCCHHHHHHHHHcCCCCcccCCCCCC
Confidence 74 5777888886 5556777888888888888888888888888877632 334567788888888888888888888
Q ss_pred ccccccCCC-ChHHHHHHHHH
Q 021192 158 PLDHLSNGP-GSAKLRELLLW 177 (316)
Q Consensus 158 pl~~~a~~~-~~~~~~~lL~~ 177 (316)
|||+|+..+ ...+++++|..
T Consensus 211 pLH~Aa~~~~~~~~iv~lLl~ 231 (446)
T PHA02946 211 PLHIVCSKTVKNVDIINLLLP 231 (446)
T ss_pred HHHHHHHcCCCcHHHHHHHHc
Confidence 887776543 34556666664
No 12
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.96 E-value=2.5e-28 Score=217.81 Aligned_cols=171 Identities=22% Similarity=0.216 Sum_probs=149.0
Q ss_pred CCcccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccc-c
Q 021192 2 QKNQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL-E 79 (316)
Q Consensus 2 ~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-~ 79 (316)
+.|.+.+. +..|.||||+|+..|+.++++.|+ +.|++++..+.. +.||||+|+..|+.+++++|++ .+.+. +
T Consensus 23 ~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~-~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~ 96 (413)
T PHA02875 23 DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLM-KHGAIPDVKYPD-IESELHDAVEEGDVKAVEELLD----LGKFADD 96 (413)
T ss_pred HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCccccCCC-cccHHHHHHHCCCHHHHHHHHH----cCCcccc
Confidence 45667765 447999999999999999999888 567778877665 8999999999999999999999 45444 4
Q ss_pred cccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCcc
Q 021192 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159 (316)
Q Consensus 80 ~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl 159 (316)
..+..|+||||+|+..|+.+++++|++.|++++..+..|.||||+|+ ..++.+++++|+++|++++.+|..|+|||
T Consensus 97 ~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~----~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL 172 (413)
T PHA02875 97 VFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAV----MMGDIKGIELLIDHKACLDIEDCCGCTPL 172 (413)
T ss_pred cccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 55678999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred ccccCCCChHHHHHHHHHhHHHHH
Q 021192 160 DHLSNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 160 ~~~a~~~~~~~~~~lL~~~~~~~~ 183 (316)
|+|+.. +..+++++|.++|++..
T Consensus 173 ~~A~~~-g~~eiv~~Ll~~ga~~n 195 (413)
T PHA02875 173 IIAMAK-GDIAICKMLLDSGANID 195 (413)
T ss_pred HHHHHc-CCHHHHHHHHhCCCCCC
Confidence 777665 55677788888776544
No 13
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.96 E-value=4.6e-28 Score=217.17 Aligned_cols=169 Identities=30% Similarity=0.445 Sum_probs=143.0
Q ss_pred CcccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccc
Q 021192 3 KNQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (316)
Q Consensus 3 ~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (316)
.+.+.+. +..|.||||+|+..|+.++++.|+ +.+.+++.++.. |.||||+|+..|+.+++++|++ .|++++.+
T Consensus 113 ~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll-~~gad~n~~d~~-g~tpLh~A~~~~~~~iv~~Ll~----~g~~~n~~ 186 (434)
T PHA02874 113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLF-EYGADVNIEDDN-GCYPIHIAIKHNFFDIIKLLLE----KGAYANVK 186 (434)
T ss_pred CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHH-hCCCCCCCcCCC-CCCHHHHHHHCCcHHHHHHHHH----CCCCCCCC
Confidence 3445553 567999999999999999999888 578899999876 9999999999999999999999 78899999
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCcccc
Q 021192 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161 (316)
Q Consensus 82 ~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 161 (316)
|..|+||||+|+..|+.+++++|++.|++++..+..|.||||+|+ ..+ .+.+.+|+ .|++++.+|..|+||||+
T Consensus 187 ~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~----~~~-~~~i~~Ll-~~~~in~~d~~G~TpLh~ 260 (434)
T PHA02874 187 DNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI----IHN-RSAIELLI-NNASINDQDIDGSTPLHH 260 (434)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHH----HCC-hHHHHHHH-cCCCCCCcCCCCCCHHHH
Confidence 999999999999999999999999999999888888999999888 443 35566655 578888888888888877
Q ss_pred ccCCCChHHHHHHHHHhHHHHH
Q 021192 162 LSNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 162 ~a~~~~~~~~~~lL~~~~~~~~ 183 (316)
|+..++..+++++|+.++++..
T Consensus 261 A~~~~~~~~iv~~Ll~~gad~n 282 (434)
T PHA02874 261 AINPPCDIDIIDILLYHKADIS 282 (434)
T ss_pred HHhcCCcHHHHHHHHHCcCCCC
Confidence 7776667778888887766533
No 14
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.95 E-value=3.1e-28 Score=212.17 Aligned_cols=157 Identities=32% Similarity=0.408 Sum_probs=144.0
Q ss_pred hhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccccccc-CCCChHHHHH
Q 021192 14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMA 92 (316)
Q Consensus 14 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~t~Lh~a 92 (316)
...++.|++.|+++.|+.+++..+..++.+|+. |.|+|||||.+++++++++|++ +|+++|..+ .-+.||||||
T Consensus 45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~-g~tlLHWAAiNNrl~v~r~li~----~gadvn~~gG~l~stPLHWA 119 (600)
T KOG0509|consen 45 LDDIVKATQYGELETVKELVESEGESVNNPDRE-GVTLLHWAAINNRLDVARYLIS----HGADVNAIGGVLGSTPLHWA 119 (600)
T ss_pred hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcC-CccceeHHHHcCcHHHHHHHHH----cCCCccccCCCCCCCcchHH
Confidence 567889999999999999997769999999986 9999999999999999999999 899999998 7789999999
Q ss_pred HHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHH
Q 021192 93 AKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 172 (316)
Q Consensus 93 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~ 172 (316)
+++|+..+|.+|+++|||++.+|.+|.||||+|+ +.++.-++-+|+.+|+|++.+|.+|+|||++||..+....+.
T Consensus 120 ar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~----~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~ 195 (600)
T KOG0509|consen 120 ARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAA----QFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVR 195 (600)
T ss_pred HHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHH----HhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHH
Confidence 9999999999999999999999999999999999 889999999999999999999999999998888877766644
Q ss_pred HHHHHhHH
Q 021192 173 ELLLWHSE 180 (316)
Q Consensus 173 ~lL~~~~~ 180 (316)
.|| ..++
T Consensus 196 ~LL-~f~a 202 (600)
T KOG0509|consen 196 RLL-KFGA 202 (600)
T ss_pred HHH-Hhcc
Confidence 444 4443
No 15
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.95 E-value=9e-28 Score=215.31 Aligned_cols=167 Identities=25% Similarity=0.354 Sum_probs=149.2
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCC---------------
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN--------------- 73 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--------------- 73 (316)
.+..+.||||.|+..|+.++|++|+ +.|++++..+.. |.||||+|+..|+.+++++|++++++
T Consensus 31 ~~~~~~tpL~~A~~~g~~~iv~~Ll-~~Ga~~n~~~~~-~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~ 108 (434)
T PHA02874 31 SVDETTTPLIDAIRSGDAKIVELFI-KHGADINHINTK-IPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIK 108 (434)
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHH
Confidence 3567899999999999999999888 678899988876 99999999999999999999986542
Q ss_pred ----CccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCC
Q 021192 74 ----DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS 149 (316)
Q Consensus 74 ----~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~ 149 (316)
.|++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+ ..++.+++++|+++|++++
T Consensus 109 ~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~----~~~~~~iv~~Ll~~g~~~n 184 (434)
T PHA02874 109 TILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAI----KHNFFDIIKLLLEKGAYAN 184 (434)
T ss_pred HHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHH----HCCcHHHHHHHHHCCCCCC
Confidence 35678889999999999999999999999999999999999999999999999 8899999999999999999
Q ss_pred CCCCCCCCccccccCCCChHHHHHHHHHhHHHH
Q 021192 150 AKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 182 (316)
Q Consensus 150 ~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~ 182 (316)
.++..|+||||+|+.. +..+++++|.+.+.+.
T Consensus 185 ~~~~~g~tpL~~A~~~-g~~~iv~~Ll~~g~~i 216 (434)
T PHA02874 185 VKDNNGESPLHNAAEY-GDYACIKLLIDHGNHI 216 (434)
T ss_pred CCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCC
Confidence 9999999999776665 5677778888777553
No 16
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.95 E-value=5.6e-28 Score=222.52 Aligned_cols=176 Identities=20% Similarity=0.180 Sum_probs=148.6
Q ss_pred CCc-ccccC--CCCChhhHHHHHh--cCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCC--HHHHHHHHcCCCCC
Q 021192 2 QKN-QDRRS--RSAKPATIHGCAQ--SGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK--AEIVKSLLEWPGND 74 (316)
Q Consensus 2 ~~~-~~~~~--~~~~~t~L~~A~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~--~~~v~~Ll~~~~~~ 74 (316)
+.| .+.+. +..|.||||.|+. .++.++++.|+ +.|+++|.++.. |.||||+|+..|+ .++|++|++ .
T Consensus 163 e~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLL-e~GADVN~kD~~-G~TPLH~Aa~~g~~~~eIVklLLe----~ 236 (764)
T PHA02716 163 DVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLC-NNGVNVNLQNNH-LITPLHTYLITGNVCASVIKKIIE----L 236 (764)
T ss_pred HCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHH-HcCCCCCCCCCC-CCCHHHHHHHcCCCCHHHHHHHHH----c
Confidence 345 66664 5679999999864 46789999888 578999999987 9999999999995 599999999 8
Q ss_pred ccccccccCCCChHHHHH-------------------------------------HHcCCHHHHHHHHhcCCCccccccC
Q 021192 75 KVELEAQNMYGETPLHMA-------------------------------------AKNGCNEAAKLLLAHGAFIEAKANN 117 (316)
Q Consensus 75 ~~~~~~~~~~g~t~Lh~a-------------------------------------~~~~~~~~~~~Ll~~g~~~~~~~~~ 117 (316)
|+++|.+|..|+||||+| +..|+.+++++|++.|++++.+|..
T Consensus 237 GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~ 316 (764)
T PHA02716 237 GGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSA 316 (764)
T ss_pred CCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCC
Confidence 999999999999999975 3457889999999999999999999
Q ss_pred CCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCC-------------CChHHHHHHHHHhHHHHHH
Q 021192 118 GMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG-------------PGSAKLRELLLWHSEEQRK 184 (316)
Q Consensus 118 g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~-------------~~~~~~~~lL~~~~~~~~~ 184 (316)
|+||||+|+.. ..++.+++++|+++|++++.+|..|+||||+++.. .+..+++++|.++|++...
T Consensus 317 G~TPLH~Aaa~--~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~ 394 (764)
T PHA02716 317 GRTCLHQYILR--HNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITA 394 (764)
T ss_pred CCCHHHHHHHH--hCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCC
Confidence 99999997622 34678999999999999999999999999876431 3567899999999876554
Q ss_pred H
Q 021192 185 R 185 (316)
Q Consensus 185 ~ 185 (316)
+
T Consensus 395 k 395 (764)
T PHA02716 395 V 395 (764)
T ss_pred c
Confidence 3
No 17
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.95 E-value=9.6e-28 Score=220.99 Aligned_cols=173 Identities=19% Similarity=0.184 Sum_probs=145.6
Q ss_pred CCcccccC-CCCChhhHHHHHhcCC--HHHHHHHHhhCCCcccCCCCCCCCcHHHHH-----------------------
Q 021192 2 QKNQDRRS-RSAKPATIHGCAQSGD--LLAFQRLLRENPSLLNERNPVMAQTPLHVS----------------------- 55 (316)
Q Consensus 2 ~~~~~~~~-~~~~~t~L~~A~~~g~--~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A----------------------- 55 (316)
+.|++.+. +..|.||||+|+..|+ .++|+.|+ +.|+++|.++.. |+||||+|
T Consensus 200 e~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLL-e~GADVN~kD~~-G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~ 277 (764)
T PHA02716 200 NNGVNVNLQNNHLITPLHTYLITGNVCASVIKKII-ELGGDMDMKCVN-GMSPIMTYIINIDNINPEITNIYIESLDGNK 277 (764)
T ss_pred HcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-HcCCCCCCCCCC-CCCHHHHHHHhhhccCHHHHHHHHHhccccc
Confidence 45677775 6689999999999996 48888887 678999999987 99999975
Q ss_pred --------------HhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHH--cCCHHHHHHHHhcCCCccccccCCC
Q 021192 56 --------------AGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK--NGCNEAAKLLLAHGAFIEAKANNGM 119 (316)
Q Consensus 56 --------------~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~--~~~~~~~~~Ll~~g~~~~~~~~~g~ 119 (316)
+..|+.+++++|++ .|++++.+|..|+||||+|+. .++.+++++|++.|++++.+|..|+
T Consensus 278 ~~~~~~~L~~~i~AA~~g~leiVklLLe----~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~ 353 (764)
T PHA02716 278 VKNIPMILHSYITLARNIDISVVYSFLQ----PGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGN 353 (764)
T ss_pred cccchhhhHHHHHHHHcCCHHHHHHHHh----CCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCC
Confidence 34578899999999 789999999999999999864 4688999999999999999999999
Q ss_pred cHHHHHhhhh----------hccCcHHHHHHHHhcCCCCCCCCCCCCCccccc---cCCCChHHHHHHHHHhHH
Q 021192 120 TPLHLSVWYS----------IRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL---SNGPGSAKLRELLLWHSE 180 (316)
Q Consensus 120 t~L~~a~~~~----------~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~---a~~~~~~~~~~lL~~~~~ 180 (316)
||||+|+... ...++.+++++|+++|+|++.+|..|+||||.+ +...+..+++++|...+.
T Consensus 354 TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~ 427 (764)
T PHA02716 354 TVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKV 427 (764)
T ss_pred CHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcc
Confidence 9999986210 013689999999999999999999999999732 334567888888887654
No 18
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.95 E-value=1.7e-27 Score=216.72 Aligned_cols=161 Identities=29% Similarity=0.390 Sum_probs=103.3
Q ss_pred CCCChhhHHHHHhcC--CHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCC--
Q 021192 10 RSAKPATIHGCAQSG--DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG-- 85 (316)
Q Consensus 10 ~~~~~t~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g-- 85 (316)
+..|.||||+|+..| +.++++.|+ +.+.+++.++.. |.||||+|+..|+.+++++|++ .|++++..+..|
T Consensus 138 ~~~g~t~L~~A~~~~~~~~~iv~~Ll-~~g~din~~d~~-g~tpL~~A~~~~~~~iv~~Ll~----~ga~~~~~~~~~~~ 211 (480)
T PHA03100 138 NSDGENLLHLYLESNKIDLKILKLLI-DKGVDINAKNRY-GYTPLHIAVEKGNIDVIKFLLD----NGADINAGDIETLL 211 (480)
T ss_pred CCCCCcHHHHHHHcCCChHHHHHHHH-HCCCCcccccCC-CCCHHHHHHHhCCHHHHHHHHH----cCCCccCCCCCCCc
Confidence 445566666666666 566666555 345555555553 6666666666666666666666 555566665555
Q ss_pred ----ChHHHHHHHcCC--HHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCcc
Q 021192 86 ----ETPLHMAAKNGC--NEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159 (316)
Q Consensus 86 ----~t~Lh~a~~~~~--~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl 159 (316)
.||||+|+..++ .+++++|++.|++++.+|..|.||||+|+ ..++.+++++|+++|+|++.+|..|.||+
T Consensus 212 ~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~----~~~~~~iv~~Ll~~gad~n~~d~~g~tpl 287 (480)
T PHA03100 212 FTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAV----YNNNPEFVKYLLDLGANPNLVNKYGDTPL 287 (480)
T ss_pred HHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCccCCCCCcHH
Confidence 566666666666 66666677777777777777777777777 66777777777777777777777777777
Q ss_pred ccccCCCChHHHHHHHHHhHHH
Q 021192 160 DHLSNGPGSAKLRELLLWHSEE 181 (316)
Q Consensus 160 ~~~a~~~~~~~~~~lL~~~~~~ 181 (316)
++|+. .+...++++|+++|++
T Consensus 288 ~~A~~-~~~~~iv~~Ll~~g~~ 308 (480)
T PHA03100 288 HIAIL-NNNKEIFKLLLNNGPS 308 (480)
T ss_pred HHHHH-hCCHHHHHHHHhcCCC
Confidence 55444 4455566666665544
No 19
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.95 E-value=3.3e-27 Score=198.34 Aligned_cols=154 Identities=31% Similarity=0.376 Sum_probs=141.7
Q ss_pred CChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHH
Q 021192 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (316)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~ 91 (316)
.|..||..|+..||+++|+.|++ .++++|..... ..|||--||..|++++|++|++ +++|+++.|+.|.|.||+
T Consensus 83 egappLWaAsaAGHl~vVk~L~~-~ga~VN~tT~T-NStPLraACfDG~leivKyLvE----~gad~~IanrhGhTcLmI 156 (615)
T KOG0508|consen 83 EGAPPLWAASAAGHLEVVKLLLR-RGASVNDTTRT-NSTPLRAACFDGHLEIVKYLVE----HGADPEIANRHGHTCLMI 156 (615)
T ss_pred CCCchhhHHhccCcHHHHHHHHH-hcCcccccccc-CCccHHHHHhcchhHHHHHHHH----cCCCCcccccCCCeeEEe
Confidence 58899999999999999998885 56999998876 7799999999999999999999 899999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHH
Q 021192 92 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKL 171 (316)
Q Consensus 92 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~ 171 (316)
||..||.+++++|++.|+|+|.++..|+|+||.++ ..|+.+++++|+.+|+.+. +|..|.||| .+|+..+...+
T Consensus 157 a~ykGh~~I~qyLle~gADvn~ks~kGNTALH~ca----EsG~vdivq~Ll~~ga~i~-~d~~GmtPL-~~Aa~tG~~~i 230 (615)
T KOG0508|consen 157 ACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCA----ESGSVDIVQLLLKHGAKID-VDGHGMTPL-LLAAVTGHTDI 230 (615)
T ss_pred eeccCchHHHHHHHHhCCCcchhcccCchHHHhhh----hcccHHHHHHHHhCCceee-ecCCCCchH-HHHhhhcchHH
Confidence 99999999999999999999999999999999999 9999999999999999876 566799999 66666777777
Q ss_pred HHHHHH
Q 021192 172 RELLLW 177 (316)
Q Consensus 172 ~~lL~~ 177 (316)
++.|..
T Consensus 231 Ve~L~~ 236 (615)
T KOG0508|consen 231 VERLLQ 236 (615)
T ss_pred HHHHhc
Confidence 777774
No 20
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.95 E-value=2.1e-27 Score=216.13 Aligned_cols=171 Identities=27% Similarity=0.356 Sum_probs=142.3
Q ss_pred CCcccccC-CCCChhhHHHHH--hcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCC--CHHHHHHHHcCCCCCcc
Q 021192 2 QKNQDRRS-RSAKPATIHGCA--QSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKV 76 (316)
Q Consensus 2 ~~~~~~~~-~~~~~t~L~~A~--~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~ 76 (316)
+.|++.+. +..|.||||+|+ ..|+.++++.|+ +.+++++..+.. |.||||+|+..| +.+++++|++ .|+
T Consensus 94 ~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll-~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~iv~~Ll~----~g~ 167 (480)
T PHA03100 94 EYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLL-DNGANVNIKNSD-GENLLHLYLESNKIDLKILKLLID----KGV 167 (480)
T ss_pred HCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHH-HcCCCCCccCCC-CCcHHHHHHHcCCChHHHHHHHHH----CCC
Confidence 34555543 556888999998 888888888777 567888888766 889999998888 8889999988 788
Q ss_pred ccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCC------CcHHHHHhhhhhccCc--HHHHHHHHhcCCCC
Q 021192 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNG------MTPLHLSVWYSIRSED--YATVKTLLEYNADC 148 (316)
Q Consensus 77 ~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g------~t~L~~a~~~~~~~~~--~~~~~~Ll~~ga~~ 148 (316)
+++.+|..|.||||+|+..|+.+++++|+++|++++..+..| .||||.|+ ..++ .+++++|+++|+++
T Consensus 168 din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~----~~~~~~~~iv~~Ll~~g~di 243 (480)
T PHA03100 168 DINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAA----CYNEITLEVVNYLLSYGVPI 243 (480)
T ss_pred CcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHH----HhCcCcHHHHHHHHHcCCCC
Confidence 888888889999999999999999999999999988888888 88888888 7778 99999999999999
Q ss_pred CCCCCCCCCccccccCCCChHHHHHHHHHhHHHHH
Q 021192 149 SAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 149 ~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~ 183 (316)
+.+|..|.||||+|+.. +..+++++|.+.|++..
T Consensus 244 n~~d~~g~TpL~~A~~~-~~~~iv~~Ll~~gad~n 277 (480)
T PHA03100 244 NIKDVYGFTPLHYAVYN-NNPEFVKYLLDLGANPN 277 (480)
T ss_pred CCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCC
Confidence 99999999999777664 45777778888776544
No 21
>PHA02946 ankyin-like protein; Provisional
Probab=99.95 E-value=5.8e-27 Score=208.93 Aligned_cols=169 Identities=17% Similarity=0.227 Sum_probs=144.1
Q ss_pred CCcccccC-CCCChhhHHHHHhcCC--HHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccc
Q 021192 2 QKNQDRRS-RSAKPATIHGCAQSGD--LLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL 78 (316)
Q Consensus 2 ~~~~~~~~-~~~~~t~L~~A~~~g~--~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~ 78 (316)
+.|++.+. +..|.||||+|+..++ .++++.|+ +.+++++......|.|||| |+..|+.+++++|++ .|+++
T Consensus 93 ~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl-~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~----~gad~ 166 (446)
T PHA02946 93 THGADPNACDKQHKTPLYYLSGTDDEVIERINLLV-QYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMS----IGFEA 166 (446)
T ss_pred HCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHH-HcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHh----ccccc
Confidence 56777774 7789999999988764 78888777 6788988643334999998 666799999999999 78999
Q ss_pred ccccCCCChHHHHHHHcC--CHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccC--cHHHHHHHHhcCCCCCCCCCC
Q 021192 79 EAQNMYGETPLHMAAKNG--CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSE--DYATVKTLLEYNADCSAKDNE 154 (316)
Q Consensus 79 ~~~~~~g~t~Lh~a~~~~--~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~--~~~~~~~Ll~~ga~~~~~~~~ 154 (316)
+.+|..|+||||+|+..+ +.+++++|++.|++++.+|.+|.||||+|+ ..+ +.+++++|+. |++++.+|..
T Consensus 167 ~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa----~~~~~~~~iv~lLl~-gadin~~d~~ 241 (446)
T PHA02946 167 RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVC----SKTVKNVDIINLLLP-STDVNKQNKF 241 (446)
T ss_pred cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH----HcCCCcHHHHHHHHc-CCCCCCCCCC
Confidence 999999999999998754 468999999999999999999999999999 554 7899999985 8999999999
Q ss_pred CCCccccccCCCChHHHHHHHHHhHHH
Q 021192 155 GKTPLDHLSNGPGSAKLRELLLWHSEE 181 (316)
Q Consensus 155 g~tpl~~~a~~~~~~~~~~lL~~~~~~ 181 (316)
|+||||+|+..++...++++|..++..
T Consensus 242 G~TpLh~A~~~~~~~~~~~~Ll~~g~~ 268 (446)
T PHA02946 242 GDSPLTLLIKTLSPAHLINKLLSTSNV 268 (446)
T ss_pred CCCHHHHHHHhCChHHHHHHHHhCCCC
Confidence 999998888877667888888877643
No 22
>PHA02795 ankyrin-like protein; Provisional
Probab=99.94 E-value=9.1e-27 Score=201.49 Aligned_cols=165 Identities=16% Similarity=0.098 Sum_probs=141.6
Q ss_pred CCCCChhhHHHHHh--cCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCc--cccccccCC
Q 021192 9 SRSAKPATIHGCAQ--SGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK--VELEAQNMY 84 (316)
Q Consensus 9 ~~~~~~t~L~~A~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~ 84 (316)
.+..++|+||.|+. .|+.++|+.|+ .+|++++..+ +.||||+|+..|+.+++++|++++++.. .+.+..+..
T Consensus 112 ~~~~~~~~L~~~~~n~~n~~eiV~~LI-~~GADIn~~~---~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~ 187 (437)
T PHA02795 112 NCNSVQDLLLYYLSNAYVEIDIVDFMV-DHGAVIYKIE---CLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKII 187 (437)
T ss_pred ccccccHHHHHHHHhcCCCHHHHHHHH-HCCCCCCCCC---CCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhh
Confidence 45678999999999 89999999888 7899998854 6799999999999999999999543110 011111235
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccC
Q 021192 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (316)
Q Consensus 85 g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~ 164 (316)
+.|++|.|+..++.+++++|+++|+++|.+|..|.||||+|+ ..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 188 ~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa----~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~ 263 (437)
T PHA02795 188 QYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAI----YAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVD 263 (437)
T ss_pred ccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 789999999999999999999999999999999999999999 8999999999999999999999999999988887
Q ss_pred CCC-------hHHHHHHHHHhHHH
Q 021192 165 GPG-------SAKLRELLLWHSEE 181 (316)
Q Consensus 165 ~~~-------~~~~~~lL~~~~~~ 181 (316)
.+. +.+++++|++++++
T Consensus 264 ~g~~~~~~~~~~eIvelLL~~gad 287 (437)
T PHA02795 264 RGSVIARRETHLKILEILLREPLS 287 (437)
T ss_pred cCCcccccccHHHHHHHHHhCCCC
Confidence 663 46888899888754
No 23
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-27 Score=200.62 Aligned_cols=163 Identities=26% Similarity=0.298 Sum_probs=145.1
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCC-------CCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccc
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERN-------PVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-------~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (316)
....|.|||..||+.||.++|++|+++.++++.... ...|-+||-.|+..||+++|+.|++ .++++|..
T Consensus 38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~----~ga~VN~t 113 (615)
T KOG0508|consen 38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLR----RGASVNDT 113 (615)
T ss_pred cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHH----hcCccccc
Confidence 356788999999999999999999998777665543 1227889999999999999999999 78999998
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCcccc
Q 021192 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161 (316)
Q Consensus 82 ~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 161 (316)
.....|||-.||.-|+.+++++|+++|+|+++.|+.|+|.||+|| ..|+.+++++|++.|||+|.++..|+|+||
T Consensus 114 T~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~----ykGh~~I~qyLle~gADvn~ks~kGNTALH- 188 (615)
T KOG0508|consen 114 TRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIAC----YKGHVDIAQYLLEQGADVNAKSYKGNTALH- 188 (615)
T ss_pred cccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeee----ccCchHHHHHHHHhCCCcchhcccCchHHH-
Confidence 888889999999999999999999999999999999999999999 899999999999999999999999999995
Q ss_pred ccCCCChHHHHHHHHHhHH
Q 021192 162 LSNGPGSAKLRELLLWHSE 180 (316)
Q Consensus 162 ~a~~~~~~~~~~lL~~~~~ 180 (316)
-|...++.+++++|+.+++
T Consensus 189 ~caEsG~vdivq~Ll~~ga 207 (615)
T KOG0508|consen 189 DCAESGSVDIVQLLLKHGA 207 (615)
T ss_pred hhhhcccHHHHHHHHhCCc
Confidence 5555667778888877643
No 24
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.94 E-value=2.3e-26 Score=209.25 Aligned_cols=166 Identities=22% Similarity=0.272 Sum_probs=125.6
Q ss_pred CCcccccC-CCCChhhHHHHHhc---CCHHHHHHHHhhCCCcc-cCCCCCCCCcHHHHHHhC--CCHHHHHHHHcCCCCC
Q 021192 2 QKNQDRRS-RSAKPATIHGCAQS---GDLLAFQRLLRENPSLL-NERNPVMAQTPLHVSAGY--NKAEIVKSLLEWPGND 74 (316)
Q Consensus 2 ~~~~~~~~-~~~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~-~~~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~~~~~ 74 (316)
+.|+|.+. +..|.||||.|+.. |+.++++.|+ +.|+++ +.++.. |.||||+|+.. ++.+++++|++ .
T Consensus 96 ~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll-~~Gadin~~~d~~-g~tpLh~a~~~~~~~~~iv~~Ll~----~ 169 (494)
T PHA02989 96 KFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLL-SKGINVNDVKNSR-GYNLLHMYLESFSVKKDVIKILLS----F 169 (494)
T ss_pred HCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHH-HCCCCcccccCCC-CCCHHHHHHHhccCCHHHHHHHHH----c
Confidence 46677764 55688888877654 6778888777 567888 677665 88888887654 57888888888 6
Q ss_pred cccccc-ccCCCChHHHHHHHcC----CHHHHHHHHhcCCCccc------------------------------------
Q 021192 75 KVELEA-QNMYGETPLHMAAKNG----CNEAAKLLLAHGAFIEA------------------------------------ 113 (316)
Q Consensus 75 ~~~~~~-~~~~g~t~Lh~a~~~~----~~~~~~~Ll~~g~~~~~------------------------------------ 113 (316)
|++++. .+..|.||||+|+..+ +.+++++|++.|++++.
T Consensus 170 Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~adv 249 (494)
T PHA02989 170 GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKI 249 (494)
T ss_pred CCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCC
Confidence 777777 5778888888887653 77888888888776543
Q ss_pred --cccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHHh
Q 021192 114 --KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178 (316)
Q Consensus 114 --~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~ 178 (316)
+|..|+||||+|+ ..++.+++++|+++|+|++.+|..|+||||+|+..+ ...++++|++.
T Consensus 250 n~~d~~G~TpL~~Aa----~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~-~~~iv~~LL~~ 311 (494)
T PHA02989 250 NKKDKKGFNPLLISA----KVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHG-NIDMLNRILQL 311 (494)
T ss_pred CCCCCCCCCHHHHHH----HhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC-CHHHHHHHHhc
Confidence 4456889999998 778899999999999999999999999997766654 45555555544
No 25
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.94 E-value=2.1e-26 Score=217.44 Aligned_cols=163 Identities=26% Similarity=0.322 Sum_probs=99.4
Q ss_pred CChhhHHHHHhcC-CHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhC-CCHHHHHHHHcCCCCCccccccccCCCChHH
Q 021192 12 AKPATIHGCAQSG-DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY-NKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (316)
Q Consensus 12 ~~~t~L~~A~~~g-~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L 89 (316)
.|.||||+|+..| +.+.++.|+ ..+++++..+.. |.||||+|+.. ++.+++++|++ .|++++.+|..|+|||
T Consensus 306 ~g~TpLh~Aa~~g~~~~~v~~Ll-~~gadin~~d~~-g~TpLh~A~~~~~~~~iv~lLl~----~gadin~~d~~G~TpL 379 (682)
T PHA02876 306 KGETPLYLMAKNGYDTENIRTLI-MLGADVNAADRL-YITPLHQASTLDRNKDIVITLLE----LGANVNARDYCDKTPI 379 (682)
T ss_pred CCCCHHHHHHHhCCCHHHHHHHH-HcCCCCCCcccC-CCcHHHHHHHhCCcHHHHHHHHH----cCCCCccCCCCCCCHH
Confidence 3444444444444 233333333 334444444433 44555554443 24555555555 5666666676777777
Q ss_pred HHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChH
Q 021192 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169 (316)
Q Consensus 90 h~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~ 169 (316)
|+|+..++.+++++|++.|++++..+..|.||||+|+. ..+...++++|++.|++++.+|..|+||||+|+..++..
T Consensus 380 h~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~---~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~ 456 (682)
T PHA02876 380 HYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALC---GTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKL 456 (682)
T ss_pred HHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHH---cCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcH
Confidence 77777777777777777777777777777777777662 223345677777777888888888888887776656566
Q ss_pred HHHHHHHHhHHHHH
Q 021192 170 KLRELLLWHSEEQR 183 (316)
Q Consensus 170 ~~~~lL~~~~~~~~ 183 (316)
.++++|.++|++..
T Consensus 457 ~iv~lLl~~Gad~n 470 (682)
T PHA02876 457 DVIEMLLDNGADVN 470 (682)
T ss_pred HHHHHHHHCCCCCC
Confidence 77777777776543
No 26
>PHA02798 ankyrin-like protein; Provisional
Probab=99.94 E-value=2.1e-26 Score=209.20 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=36.9
Q ss_pred cccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhH
Q 021192 114 KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 179 (316)
Q Consensus 114 ~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~ 179 (316)
+|..|.||||+|+ ..++.+++++|+++|||++.+|..|+|||+.|+. .+...++..|++++
T Consensus 254 ~d~~G~TPL~~A~----~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~-~~~~~iv~~lL~~~ 314 (489)
T PHA02798 254 VDELGFNPLYYSV----SHNNRKIFEYLLQLGGDINIITELGNTCLFTAFE-NESKFIFNSILNKK 314 (489)
T ss_pred cCcCCccHHHHHH----HcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHH-cCcHHHHHHHHccC
Confidence 4445667777766 5666677777777777777777777777754444 33344444444443
No 27
>PHA02917 ankyrin-like protein; Provisional
Probab=99.94 E-value=3.2e-26 Score=211.80 Aligned_cols=164 Identities=18% Similarity=0.164 Sum_probs=133.1
Q ss_pred CCCCChhhHHHHHhc---CCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCC-------------------------
Q 021192 9 SRSAKPATIHGCAQS---GDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK------------------------- 60 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~------------------------- 60 (316)
.+..|.||||+||.. |+.++|+.|| +.|++++..+.. |.||||+|+..|+
T Consensus 28 ~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll-~~ga~v~~~~~~-g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~ 105 (661)
T PHA02917 28 RNQFKNNALHAYLFNEHCNNVEVVKLLL-DSGTNPLHKNWR-QLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNI 105 (661)
T ss_pred cCCCCCcHHHHHHHhhhcCcHHHHHHHH-HCCCCccccCCC-CCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcch
Confidence 477899999997655 8899999888 578899988876 9999998887665
Q ss_pred ----------HHHHHHHHcCCCCCccccccccCCCChHHHHHH--HcCCHHHHHHHHhcCCCcccccc---CC-------
Q 021192 61 ----------AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA--KNGCNEAAKLLLAHGAFIEAKAN---NG------- 118 (316)
Q Consensus 61 ----------~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~--~~~~~~~~~~Ll~~g~~~~~~~~---~g------- 118 (316)
.++|++|++ .|+++|.+|..|+||||.++ ..|+.+++++|+++|+++|..|. .|
T Consensus 106 ~~~~a~~~~~~e~vk~Ll~----~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~ 181 (661)
T PHA02917 106 FSYMKSKNVDVDLIKVLVE----HGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQ 181 (661)
T ss_pred HHHHHhhcCCHHHHHHHHH----cCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccc
Confidence 344555555 78999999999999999654 47899999999999999986653 34
Q ss_pred ----CcHHHHHhhhh-------hccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCCh-HHHHHHHHHh
Q 021192 119 ----MTPLHLSVWYS-------IRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS-AKLRELLLWH 178 (316)
Q Consensus 119 ----~t~L~~a~~~~-------~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~-~~~~~lL~~~ 178 (316)
.||||+|+... ...++.+++++|+++|+|++.+|.+|.||||+|+..++. .+++++|.++
T Consensus 182 ~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g 253 (661)
T PHA02917 182 PRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKG 253 (661)
T ss_pred ccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhC
Confidence 59999998311 014689999999999999999999999999888876654 3688888763
No 28
>PHA03095 ankyrin-like protein; Provisional
Probab=99.94 E-value=2e-26 Score=209.22 Aligned_cols=175 Identities=23% Similarity=0.252 Sum_probs=146.0
Q ss_pred CCcccccC-CCCChhhHHHHHhcC---CHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCC-CHHHHHHHHcCCCCCcc
Q 021192 2 QKNQDRRS-RSAKPATIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN-KAEIVKSLLEWPGNDKV 76 (316)
Q Consensus 2 ~~~~~~~~-~~~~~t~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~ 76 (316)
+.|.+.+. +..|.||||+|+..| +.++++.|+ +.|+++|.++.. |.||||+|+..| +.+++++|++ .|+
T Consensus 35 ~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll-~~Gadin~~~~~-g~TpLh~A~~~~~~~~iv~lLl~----~ga 108 (471)
T PHA03095 35 AAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLL-EAGADVNAPERC-GFTPLHLYLYNATTLDVIKLLIK----AGA 108 (471)
T ss_pred HcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHH-HCCCCCCCCCCC-CCCHHHHHHHcCCcHHHHHHHHH----cCC
Confidence 45666664 556899999999988 899999887 678999999886 999999999999 5999999999 788
Q ss_pred ccccccCCCChHHHHHH--HcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCC
Q 021192 77 ELEAQNMYGETPLHMAA--KNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNE 154 (316)
Q Consensus 77 ~~~~~~~~g~t~Lh~a~--~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~ 154 (316)
+++.+|..|+||||+|+ ..++.+++++|++.|++++..|..|.||||+|+.. ...+.+++++|+++|++++..|..
T Consensus 109 ~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~--~~~~~~iv~~Ll~~g~~~~~~d~~ 186 (471)
T PHA03095 109 DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKS--RNANVELLRLLIDAGADVYAVDDR 186 (471)
T ss_pred CCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc--CCCCHHHHHHHHHcCCCCcccCCC
Confidence 99999999999999999 45688999999999999999999999999998833 234688999999999999888889
Q ss_pred CCCccccccCC-CChHHHHHHHHHhHHHHHH
Q 021192 155 GKTPLDHLSNG-PGSAKLRELLLWHSEEQRK 184 (316)
Q Consensus 155 g~tpl~~~a~~-~~~~~~~~lL~~~~~~~~~ 184 (316)
|+||||+++.. .....++++|..+|.+...
T Consensus 187 g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~ 217 (471)
T PHA03095 187 FRSLLHHHLQSFKPRARIVRELIRAGCDPAA 217 (471)
T ss_pred CCCHHHHHHHHCCCcHHHHHHHHHcCCCCcc
Confidence 99999877653 3556777777777665443
No 29
>PHA02798 ankyrin-like protein; Provisional
Probab=99.94 E-value=3.3e-26 Score=207.92 Aligned_cols=177 Identities=20% Similarity=0.186 Sum_probs=147.4
Q ss_pred CCcccccC-CCCChhhHHHHHhc-----CCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCC---CHHHHHHHHcCCC
Q 021192 2 QKNQDRRS-RSAKPATIHGCAQS-----GDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN---KAEIVKSLLEWPG 72 (316)
Q Consensus 2 ~~~~~~~~-~~~~~t~L~~A~~~-----g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~ 72 (316)
+.|++.+. +..|.||||.|+.. ++.++++.|+ +.|+++|.++.. |.||||+|+..+ +.+++++|++
T Consensus 59 ~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll-~~GadiN~~d~~-G~TpLh~a~~~~~~~~~~iv~~Ll~--- 133 (489)
T PHA02798 59 NLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILI-ENGADINKKNSD-GETPLYCLLSNGYINNLEILLFMIE--- 133 (489)
T ss_pred HCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHH-HCCCCCCCCCCC-cCcHHHHHHHcCCcChHHHHHHHHH---
Confidence 56778874 77899999998864 6788899888 678999999987 999999999875 7899999999
Q ss_pred CCccccccccCCCChHHHHHHHcCC---HHHHHHHHhcCCCccccc-cCCCcHHHHHhhhhhccCcHHHHHHHHhcCCC-
Q 021192 73 NDKVELEAQNMYGETPLHMAAKNGC---NEAAKLLLAHGAFIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD- 147 (316)
Q Consensus 73 ~~~~~~~~~~~~g~t~Lh~a~~~~~---~~~~~~Ll~~g~~~~~~~-~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~- 147 (316)
.|++++.+|..|.||||+|+..++ .+++++|++.|++++..+ ..|.||||.++......++.+++++|+++|++
T Consensus 134 -~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i 212 (489)
T PHA02798 134 -NGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFII 212 (489)
T ss_pred -cCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCc
Confidence 899999999999999999999988 999999999999999885 57899999988544345678888888877764
Q ss_pred --------------------------------------CCCCCCCCCCccccccCCCChHHHHHHHHHhHHHHHHH
Q 021192 148 --------------------------------------CSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185 (316)
Q Consensus 148 --------------------------------------~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (316)
+|.+|..|+||||+|+.. +...++++|++.|++....
T Consensus 213 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~-~~~~~v~~LL~~GAdin~~ 287 (489)
T PHA02798 213 NKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSH-NNRKIFEYLLQLGGDINII 287 (489)
T ss_pred ccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHc-CcHHHHHHHHHcCCccccc
Confidence 455677899999777654 4667888888888776544
No 30
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.94 E-value=4.2e-26 Score=207.50 Aligned_cols=177 Identities=17% Similarity=0.200 Sum_probs=125.2
Q ss_pred CCcccccCCCCChhhHHHHHhcC------CHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhC---CCHHHHHHHHcCCC
Q 021192 2 QKNQDRRSRSAKPATIHGCAQSG------DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY---NKAEIVKSLLEWPG 72 (316)
Q Consensus 2 ~~~~~~~~~~~~~t~L~~A~~~g------~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~ 72 (316)
+.|+|.+....+.||||.|+..+ +.++++.|+ +.|+++|.++.. |.||||.|+.. |+.+++++|++
T Consensus 58 ~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll-~~Gadin~~d~~-g~tpL~~a~~~~~~~~~eiv~~Ll~--- 132 (494)
T PHA02989 58 DNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLL-KFGADINLKTFN-GVSPIVCFIYNSNINNCDMLRFLLS--- 132 (494)
T ss_pred HcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHHH-HCCCCCCCCCCC-CCcHHHHHHHhcccCcHHHHHHHHH---
Confidence 46677776666778888776644 356677666 567788888766 88888876644 56788888888
Q ss_pred CCcccc-ccccCCCChHHHHHHHc--CCHHHHHHHHhcCCCccc-cccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCC
Q 021192 73 NDKVEL-EAQNMYGETPLHMAAKN--GCNEAAKLLLAHGAFIEA-KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADC 148 (316)
Q Consensus 73 ~~~~~~-~~~~~~g~t~Lh~a~~~--~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~ 148 (316)
.|+++ +.+|..|+||||+|+.. ++.+++++|+++|++++. .+..|.||||.|+..+...++.+++++|+++|+++
T Consensus 133 -~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v 211 (494)
T PHA02989 133 -KGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI 211 (494)
T ss_pred -CCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCc
Confidence 67778 67788888888887653 577888888888888877 57778888888774433445778888888877765
Q ss_pred CC--------------------------------------CCCCCCCccccccCCCChHHHHHHHHHhHHHHHHH
Q 021192 149 SA--------------------------------------KDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185 (316)
Q Consensus 149 ~~--------------------------------------~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (316)
+. +|..|+||||+|+.. +..+++++|++.|++...+
T Consensus 212 n~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~-~~~~~v~~LL~~Gadin~~ 285 (494)
T PHA02989 212 ETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKV-DNYEAFNYLLKLGDDIYNV 285 (494)
T ss_pred cccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHh-cCHHHHHHHHHcCCCcccc
Confidence 43 344588888666654 4566777777777665443
No 31
>PHA03095 ankyrin-like protein; Provisional
Probab=99.94 E-value=8.4e-26 Score=205.17 Aligned_cols=170 Identities=22% Similarity=0.287 Sum_probs=110.7
Q ss_pred CcccccC-CCCChhhHHHHH--hcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCC--CHHHHHHHHcCCCC----
Q 021192 3 KNQDRRS-RSAKPATIHGCA--QSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN--KAEIVKSLLEWPGN---- 73 (316)
Q Consensus 3 ~~~~~~~-~~~~~t~L~~A~--~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~---- 73 (316)
+|.+.+. +..|.||||+|+ ..++.++++.|+ +.+++++..+.. |.||||+|+..+ +.+++++|++++++
T Consensus 106 ~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll-~~gad~~~~d~~-g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~ 183 (471)
T PHA03095 106 AGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLL-RKGADVNALDLY-GMTPLAVLLKSRNANVELLRLLIDAGADVYAV 183 (471)
T ss_pred cCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHH-HcCCCCCccCCC-CCCHHHHHHHcCCCCHHHHHHHHHcCCCCccc
Confidence 4455543 344666666666 444566666555 345566665554 666666555443 34555555542110
Q ss_pred ---------------------------CccccccccCCCChHHHHHHHcCCH--HHHHHHHhcCCCccccccCCCcHHHH
Q 021192 74 ---------------------------DKVELEAQNMYGETPLHMAAKNGCN--EAAKLLLAHGAFIEAKANNGMTPLHL 124 (316)
Q Consensus 74 ---------------------------~~~~~~~~~~~g~t~Lh~a~~~~~~--~~~~~Ll~~g~~~~~~~~~g~t~L~~ 124 (316)
.|++++.+|..|+||||+|+..++. .+++.|+..|+++|.+|..|+||||+
T Consensus 184 d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~ 263 (471)
T PHA03095 184 DDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHY 263 (471)
T ss_pred CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 5566667777777777777776654 46777778888888888888888888
Q ss_pred HhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhH
Q 021192 125 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 179 (316)
Q Consensus 125 a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~ 179 (316)
|+ ..|+.+++++|++.|+|++.+|..|+||||+|+..+ +..++.+|+..+
T Consensus 264 A~----~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~-~~~~v~~LL~~~ 313 (471)
T PHA03095 264 AA----VFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNN-NGRAVRAALAKN 313 (471)
T ss_pred HH----HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhC-CHHHHHHHHHhC
Confidence 88 778888888888888888888888888886665544 444555555444
No 32
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.94 E-value=3.7e-26 Score=215.76 Aligned_cols=171 Identities=23% Similarity=0.259 Sum_probs=151.8
Q ss_pred cccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCC-CHHHHHHHHcCCCCCccccccc
Q 021192 4 NQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN-KAEIVKSLLEWPGNDKVELEAQ 81 (316)
Q Consensus 4 ~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~ 81 (316)
+.+.+. +..|.||||+|+..|+...+..+|.+.+.+++.++.. |.||||+|+..| +.+++++|+. .|++++.+
T Consensus 263 g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~-g~TpLh~Aa~~g~~~~~v~~Ll~----~gadin~~ 337 (682)
T PHA02876 263 GFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIK-GETPLYLMAKNGYDTENIRTLIM----LGADVNAA 337 (682)
T ss_pred CCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCC-CCCHHHHHHHhCCCHHHHHHHHH----cCCCCCCc
Confidence 444443 5679999999999999865555555788999999976 999999999999 5999999999 88999999
Q ss_pred cCCCChHHHHHHHc-CCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccc
Q 021192 82 NMYGETPLHMAAKN-GCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160 (316)
Q Consensus 82 ~~~g~t~Lh~a~~~-~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~ 160 (316)
|..|+||||+|+.. ++.+++++|++.|++++.+|..|.||||+|+ ..++.+++++|+++|++++..+..|.||||
T Consensus 338 d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa----~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh 413 (682)
T PHA02876 338 DRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAA----VRNNVVIINTLLDYGADIEALSQKIGTALH 413 (682)
T ss_pred ccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCccccCCCCCchHH
Confidence 99999999999985 5789999999999999999999999999999 889999999999999999999999999999
Q ss_pred cccCCCChHHHHHHHHHhHHHHH
Q 021192 161 HLSNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 161 ~~a~~~~~~~~~~lL~~~~~~~~ 183 (316)
+|+...+...++++|.++|.+..
T Consensus 414 ~A~~~~~~~~~vk~Ll~~gadin 436 (682)
T PHA02876 414 FALCGTNPYMSVKTLIDRGANVN 436 (682)
T ss_pred HHHHcCCHHHHHHHHHhCCCCCC
Confidence 99888887788888888876644
No 33
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.94 E-value=8.4e-26 Score=165.81 Aligned_cols=146 Identities=32% Similarity=0.337 Sum_probs=129.5
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
..++-...+.+|+..+.+..|+.||.+....+|.+|.. |+||||.|+.+||.+||+.|+. .|++++.+...||||
T Consensus 59 me~dp~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D-~YTpLHRAaYn~h~div~~ll~----~gAn~~a~T~~GWTP 133 (228)
T KOG0512|consen 59 MEKDPIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDED-EYTPLHRAAYNGHLDIVHELLL----SGANKEAKTNEGWTP 133 (228)
T ss_pred cccCHHHHHHHHHhhccHHHHHHHHHhccccccccccc-cccHHHHHHhcCchHHHHHHHH----ccCCcccccccCccc
Confidence 33444556789999999999999999999999999987 9999999999999999999999 789999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHH-hcCCCCCCCCCCCCCccccc
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL-EYNADCSAKDNEGKTPLDHL 162 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll-~~ga~~~~~~~~g~tpl~~~ 162 (316)
||-||...+.+|+.+|+.+|+|+|+......||||+||- ..+....+++|+ ..+.++..++..+.||+.+|
T Consensus 134 LhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~---~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iA 205 (228)
T KOG0512|consen 134 LHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAG---NRNSRDTLELLLHDRYIHPGLKNNLEETAFDIA 205 (228)
T ss_pred hhhhhcccchhHHHHHHhccCcccccccccchhhHHhhc---ccchHHHHHHHhhccccChhhhcCccchHHHHH
Confidence 999999999999999999999999999999999999993 233455667766 55899999999999999554
No 34
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.93 E-value=1.5e-25 Score=173.86 Aligned_cols=145 Identities=20% Similarity=0.256 Sum_probs=124.7
Q ss_pred ccccc-CCCCChhhHHHHHhcCCHHHHHH---HHhhCCCcccCCCCCCCCcHHHHHHhCCCHHH---HHHHHcCCCCCcc
Q 021192 4 NQDRR-SRSAKPATIHGCAQSGDLLAFQR---LLRENPSLLNERNPVMAQTPLHVSAGYNKAEI---VKSLLEWPGNDKV 76 (316)
Q Consensus 4 ~~~~~-~~~~~~t~L~~A~~~g~~~~v~~---ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~---v~~Ll~~~~~~~~ 76 (316)
+++.. .++.+.++||.||+.|+++.++. ++.+.+.+++..+.. |+||||+|+..|+.++ +++|++ .|+
T Consensus 10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~-g~t~Lh~Aa~~g~~~~~~~i~~Ll~----~Ga 84 (166)
T PHA02743 10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHH-GRQCTHMVAWYDRANAVMKIELLVN----MGA 84 (166)
T ss_pred chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCC-CCcHHHHHHHhCccCHHHHHHHHHH----cCC
Confidence 34443 35567889999999999855443 233677888888876 9999999999988654 789999 889
Q ss_pred cccccc-CCCChHHHHHHHcCCHHHHHHHHh-cCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCC
Q 021192 77 ELEAQN-MYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNE 154 (316)
Q Consensus 77 ~~~~~~-~~g~t~Lh~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~ 154 (316)
+++.+| ..|+||||+|+..++.+++++|+. .|++++.+|..|.||||+|+ ..++.+++++|+++|++++.++..
T Consensus 85 din~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~----~~~~~~iv~~Ll~~ga~~~~~~~~ 160 (166)
T PHA02743 85 DINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAY----KMRDRRMMEILRANGAVCDDPLSI 160 (166)
T ss_pred CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCCcccC
Confidence 999998 589999999999999999999995 79999999999999999999 889999999999999999999887
Q ss_pred CCC
Q 021192 155 GKT 157 (316)
Q Consensus 155 g~t 157 (316)
|..
T Consensus 161 ~~~ 163 (166)
T PHA02743 161 GLS 163 (166)
T ss_pred Ccc
Confidence 753
No 35
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.93 E-value=4.1e-26 Score=173.78 Aligned_cols=158 Identities=22% Similarity=0.252 Sum_probs=129.8
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
.+-.+++|+.+++.+.+++.+..+. ...+|..|.. |.|||.||+.+|+.++|++||+ .|+++++..++..|+
T Consensus 125 vs~~p~s~~slsVhql~L~~~~~~~---~n~VN~~De~-GfTpLiWAaa~G~i~vV~fLL~----~GAdp~~lgk~resA 196 (296)
T KOG0502|consen 125 VSLMPWSPLSLSVHQLHLDVVDLLV---NNKVNACDEF-GFTPLIWAAAKGHIPVVQFLLN----SGADPDALGKYRESA 196 (296)
T ss_pred cccccCChhhHHHHHHHHHHHHHHh---hccccCcccc-CchHhHHHHhcCchHHHHHHHH----cCCChhhhhhhhhhh
Confidence 3556788888888888777766544 3467788876 9999999999999999999998 788888888888899
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCCh
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~ 168 (316)
|++|++.|..++|++|+.++.|+|..|.+|-|||-+|+ +.++.+||+.|++.|||++..+..|+++++.|.+.+.
T Consensus 197 LsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAv----rgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGy- 271 (296)
T KOG0502|consen 197 LSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAV----RGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGY- 271 (296)
T ss_pred HhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeee----cCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhh-
Confidence 99999999999999999999999999999999999998 8888999999999999999999999999876665443
Q ss_pred HHHHHHHHHhH
Q 021192 169 AKLRELLLWHS 179 (316)
Q Consensus 169 ~~~~~lL~~~~ 179 (316)
..+...+..|.
T Consensus 272 r~Vqqvie~h~ 282 (296)
T KOG0502|consen 272 RIVQQVIEKHA 282 (296)
T ss_pred HHHHHHHHHHH
Confidence 46666655543
No 36
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.93 E-value=7.6e-26 Score=201.48 Aligned_cols=170 Identities=26% Similarity=0.363 Sum_probs=144.4
Q ss_pred CcccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCCCc--------------ccCCCCCCCCcHHHHHHhCCCHHHHHHH
Q 021192 3 KNQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENPSL--------------LNERNPVMAQTPLHVSAGYNKAEIVKSL 67 (316)
Q Consensus 3 ~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~--------------~~~~~~~~g~t~Lh~A~~~g~~~~v~~L 67 (316)
+..+.+- ++.+.||||.|+..|+.++++..|...... +|..|+. |.||||+||+.|+.+.++.|
T Consensus 214 r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~d-g~tpLH~a~r~G~~~svd~L 292 (929)
T KOG0510|consen 214 RQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDND-GCTPLHYAARQGGPESVDNL 292 (929)
T ss_pred hhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhccccc-CCchHHHHHHcCChhHHHHH
Confidence 4555554 678999999999999999999998754432 3445655 99999999999999999999
Q ss_pred HcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHh-cC-CCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcC
Q 021192 68 LEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN 145 (316)
Q Consensus 68 l~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~-~g-~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~g 145 (316)
+. .|++++.++.++.||||.|+..|+.++|+-|++ .| ...|..|-.|.||||+|+ +.||..++++|++.|
T Consensus 293 l~----~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa----~~gH~~v~qlLl~~G 364 (929)
T KOG0510|consen 293 LG----FGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAA----KSGHDRVVQLLLNKG 364 (929)
T ss_pred HH----cCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhh----hcCHHHHHHHHHhcC
Confidence 99 899999999999999999999999999999998 55 568899999999999999 999999999999999
Q ss_pred CCCC---CCCCCCCCccccccCCCChHHHHHHHHHhHHHH
Q 021192 146 ADCS---AKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 182 (316)
Q Consensus 146 a~~~---~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~ 182 (316)
|+.+ ..|.+|.||||.|+.+ ++..++++|..+|++.
T Consensus 365 A~~~~~~e~D~dg~TaLH~Aa~~-g~~~av~~Li~~Ga~I 403 (929)
T KOG0510|consen 365 ALFLNMSEADSDGNTALHLAAKY-GNTSAVQKLISHGADI 403 (929)
T ss_pred hhhhcccccccCCchhhhHHHHh-ccHHHHHHHHHcCCce
Confidence 9987 4599999999777665 4566777777777765
No 37
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.93 E-value=1.8e-25 Score=213.95 Aligned_cols=165 Identities=18% Similarity=0.270 Sum_probs=146.8
Q ss_pred cCCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCCh
Q 021192 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (316)
Q Consensus 8 ~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (316)
..++...++||.||..|+.+.++.|+ +.+.++|..|.. |.||||+|+..|+.+++++|++ .|+++|.+|.+|+|
T Consensus 520 ~~~~~~~~~L~~Aa~~g~~~~l~~Ll-~~G~d~n~~d~~-G~TpLh~Aa~~g~~~~v~~Ll~----~gadin~~d~~G~T 593 (823)
T PLN03192 520 HDDPNMASNLLTVASTGNAALLEELL-KAKLDPDIGDSK-GRTPLHIAASKGYEDCVLVLLK----HACNVHIRDANGNT 593 (823)
T ss_pred cCCccchhHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCC-CCCHHHHHHHcChHHHHHHHHh----cCCCCCCcCCCCCC
Confidence 34556789999999999999999888 678999999987 9999999999999999999999 78999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCC
Q 021192 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (316)
Q Consensus 88 ~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~ 167 (316)
|||+|+..|+.+++++|++.++..+. ..+.++||.|+ ..|+.+++++|+++|+|+|.+|.+|+||||+|+. .+
T Consensus 594 pL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa----~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~-~g 666 (823)
T PLN03192 594 ALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAA----KRNDLTAMKELLKQGLNVDSEDHQGATALQVAMA-ED 666 (823)
T ss_pred HHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHH----HhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-CC
Confidence 99999999999999999998876653 45779999999 8999999999999999999999999999976665 55
Q ss_pred hHHHHHHHHHhHHHHHHH
Q 021192 168 SAKLRELLLWHSEEQRKR 185 (316)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~ 185 (316)
+.+++++|.++|++....
T Consensus 667 ~~~iv~~Ll~~GAdv~~~ 684 (823)
T PLN03192 667 HVDMVRLLIMNGADVDKA 684 (823)
T ss_pred cHHHHHHHHHcCCCCCCC
Confidence 778888888888665433
No 38
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.93 E-value=7e-26 Score=184.62 Aligned_cols=161 Identities=24% Similarity=0.313 Sum_probs=146.1
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhC-----CCHHHHHHHHcCCCCCcccccccc-
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY-----NKAEIVKSLLEWPGNDKVELEAQN- 82 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~~- 82 (316)
.|++|+|+||+|+..+|+++|+.||..+-++++.++.. |+||+++|+.. .+.++|..|.+ . .|+|++-
T Consensus 264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrA-GYtpiMLaALA~lk~~~d~~vV~~LF~----m-gnVNaKAs 337 (452)
T KOG0514|consen 264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRA-GYTPVMLAALAKLKQPADRTVVERLFK----M-GDVNAKAS 337 (452)
T ss_pred hcCCCCeeeeeeecccchHHHHHHhccCcccccccccc-cccHHHHHHHHhhcchhhHHHHHHHHh----c-cCcchhhh
Confidence 58899999999999999999999999999999999988 99999998744 46789999988 3 3677776
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhc-CCCCCCCCCCCCCcccc
Q 021192 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTPLDH 161 (316)
Q Consensus 83 ~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~-ga~~~~~~~~g~tpl~~ 161 (316)
..|+|+|++|+.+|+.++|+.|+.+|+|+|.+|.+|.|+|++|| .+||.+++++||.. ++|+...|.+|.|+| .
T Consensus 338 Q~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~----EHGhkEivklLLA~p~cd~sLtD~DgSTAl-~ 412 (452)
T KOG0514|consen 338 QHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAA----EHGHKEIVKLLLAVPSCDISLTDVDGSTAL-S 412 (452)
T ss_pred hhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhh----hhChHHHHHHHhccCcccceeecCCCchhh-h
Confidence 67999999999999999999999999999999999999999999 99999999999977 899999999999999 6
Q ss_pred ccCCCChHHHHHHHHHhHH
Q 021192 162 LSNGPGSAKLRELLLWHSE 180 (316)
Q Consensus 162 ~a~~~~~~~~~~lL~~~~~ 180 (316)
.|...++.+|.-+|..+..
T Consensus 413 IAleagh~eIa~mlYa~~n 431 (452)
T KOG0514|consen 413 IALEAGHREIAVMLYAHMN 431 (452)
T ss_pred hHHhcCchHHHHHHHHHHH
Confidence 6777788888888876653
No 39
>PHA02741 hypothetical protein; Provisional
Probab=99.92 E-value=1.9e-24 Score=168.52 Aligned_cols=128 Identities=20% Similarity=0.223 Sum_probs=83.7
Q ss_pred CCcHHHHHHhCCCHHHHHHHHcCC--CCCccccccccCCCChHHHHHHHcCC----HHHHHHHHhcCCCcccccc-CCCc
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLEWP--GNDKVELEAQNMYGETPLHMAAKNGC----NEAAKLLLAHGAFIEAKAN-NGMT 120 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~~~~g~t~Lh~a~~~~~----~~~~~~Ll~~g~~~~~~~~-~g~t 120 (316)
|.||||+|++.|+.++++.|+... ...+++++.+|..|+||||+|+..++ .+++++|++.|+++|.++. .|+|
T Consensus 21 g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~T 100 (169)
T PHA02741 21 GENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDT 100 (169)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCC
Confidence 677777777777777777665321 11356677777777777777777766 3666777777777777664 6777
Q ss_pred HHHHHhhhhhccCcHHHHHHHHh-cCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhHH
Q 021192 121 PLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180 (316)
Q Consensus 121 ~L~~a~~~~~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~ 180 (316)
|||+|+ ..++.+++++|+. .|++++.+|..|+||||+|... +...++++|...++
T Consensus 101 pLh~A~----~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~-~~~~iv~~L~~~~~ 156 (169)
T PHA02741 101 ALHLAA----HRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDN-EDVAMMQILREIVA 156 (169)
T ss_pred HHHHHH----HcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHC-CCHHHHHHHHHHHH
Confidence 777777 6667777777775 4777777777777777544443 34456666655543
No 40
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.92 E-value=3.4e-24 Score=205.21 Aligned_cols=148 Identities=20% Similarity=0.203 Sum_probs=132.6
Q ss_pred CCcccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccccc
Q 021192 2 QKNQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (316)
Q Consensus 2 ~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 80 (316)
+.|.|.+. +..|.||||+||..|+.++++.|+ +.++++|.+|.. |.||||+|+..|+.+++++|++ .++..+
T Consensus 546 ~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll-~~gadin~~d~~-G~TpL~~A~~~g~~~iv~~L~~----~~~~~~- 618 (823)
T PLN03192 546 KAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLL-KHACNVHIRDAN-GNTALWNAISAKHHKIFRILYH----FASISD- 618 (823)
T ss_pred HCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHH-hcCCCCCCcCCC-CCCHHHHHHHhCCHHHHHHHHh----cCcccC-
Confidence 45666665 678999999999999999999888 578999999986 9999999999999999999998 444433
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCC-CCcc
Q 021192 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG-KTPL 159 (316)
Q Consensus 81 ~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g-~tpl 159 (316)
...|.++||.|+..|+.+++++|+++|+++|.+|..|.||||+|+ ..|+.+++++|+++|+|++.+|..| .||+
T Consensus 619 -~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~----~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~ 693 (823)
T PLN03192 619 -PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAM----AEDHVDMVRLLIMNGADVDKANTDDDFSPT 693 (823)
T ss_pred -cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HCCcHHHHHHHHHcCCCCCCCCCCCCCCHH
Confidence 245779999999999999999999999999999999999999999 8999999999999999999999988 8887
Q ss_pred cc
Q 021192 160 DH 161 (316)
Q Consensus 160 ~~ 161 (316)
+.
T Consensus 694 ~l 695 (823)
T PLN03192 694 EL 695 (823)
T ss_pred HH
Confidence 43
No 41
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.91 E-value=2.3e-24 Score=192.14 Aligned_cols=166 Identities=28% Similarity=0.348 Sum_probs=99.8
Q ss_pred CCChhhHHHHHhcCCHHHHHHHHhhCC----CcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccc---------
Q 021192 11 SAKPATIHGCAQSGDLLAFQRLLRENP----SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE--------- 77 (316)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~----~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~--------- 77 (316)
..|++|+|.|++.|..++...++.++| ..+|.-+.. |.||||.|+..|+.++++.+|+.+. ..++
T Consensus 185 ~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~-~~~pLhlAve~g~~e~lk~~L~n~~-~~a~~~~~~~~q~ 262 (929)
T KOG0510|consen 185 IDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNE-KATPLHLAVEGGDIEMLKMCLQNGK-KIADVQLDAMQQE 262 (929)
T ss_pred CcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCC-CCcchhhhhhcCCHHHHHHHHhCcc-ccchhhhHHHHHH
Confidence 334444444444444444444443222 234444443 5666666666666666666666432 1111
Q ss_pred ---cccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHh-cC-CCCCCCC
Q 021192 78 ---LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE-YN-ADCSAKD 152 (316)
Q Consensus 78 ---~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~-~g-a~~~~~~ 152 (316)
+|..|++|.||||+|++.|++++++.|+..|++++.++.++.||||.|+ +.|++.+|+-|++ .| ...|..|
T Consensus 263 kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA----~yg~~ntv~rLL~~~~~rllne~D 338 (929)
T KOG0510|consen 263 KELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAA----IYGRINTVERLLQESDTRLLNESD 338 (929)
T ss_pred HHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHH----HcccHHHHHHHHhCcCcccccccc
Confidence 3455677777777777777777777777777777777777777777777 6677777777776 33 4456667
Q ss_pred CCCCCccccccCCCChHHHHHHHHHhHHHHH
Q 021192 153 NEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 153 ~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~ 183 (316)
..|.||||.++ ..++..+.++|+..|+...
T Consensus 339 ~~g~tpLHlaa-~~gH~~v~qlLl~~GA~~~ 368 (929)
T KOG0510|consen 339 LHGMTPLHLAA-KSGHDRVVQLLLNKGALFL 368 (929)
T ss_pred ccCCCchhhhh-hcCHHHHHHHHHhcChhhh
Confidence 77777774444 5666677777776665544
No 42
>PHA02741 hypothetical protein; Provisional
Probab=99.91 E-value=5.5e-24 Score=165.85 Aligned_cols=131 Identities=27% Similarity=0.357 Sum_probs=118.5
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhh-----CCCcccCCCCCCCCcHHHHHHhCCC----HHHHHHHHcCCCCCccccc
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRE-----NPSLLNERNPVMAQTPLHVSAGYNK----AEIVKSLLEWPGNDKVELE 79 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~-----~~~~~~~~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~~~~~~~ 79 (316)
.+..|.|+||+||..|+.++++.|+.. .+.+++.++.. |.||||+|+..|+ .+++++|++ .|++++
T Consensus 17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~-g~T~Lh~A~~~g~~~~~~~ii~~Ll~----~gadin 91 (169)
T PHA02741 17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDA-GQMCIHIAAEKHEAQLAAEIIDHLIE----LGADIN 91 (169)
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCC-CCcHHHHHHHcCChHHHHHHHHHHHH----cCCCCC
Confidence 467899999999999999999988642 35789999987 9999999999999 588999999 789999
Q ss_pred cccC-CCChHHHHHHHcCCHHHHHHHHh-cCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCC
Q 021192 80 AQNM-YGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADC 148 (316)
Q Consensus 80 ~~~~-~g~t~Lh~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~ 148 (316)
.++. .|+||||+|+..++.+++++|+. .|++++..|.+|+||||+|+ ..++.+++++|++.++..
T Consensus 92 ~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~----~~~~~~iv~~L~~~~~~~ 158 (169)
T PHA02741 92 AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAI----DNEDVAMMQILREIVATS 158 (169)
T ss_pred CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHH----HCCCHHHHHHHHHHHHHh
Confidence 9985 89999999999999999999998 59999999999999999999 889999999999887653
No 43
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.91 E-value=4.1e-24 Score=164.31 Aligned_cols=132 Identities=23% Similarity=0.292 Sum_probs=109.1
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhh----CCCcccCCCCCCCCcHHHHHHhCCCH---HHHHHHHcCCCCCccccccc
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRE----NPSLLNERNPVMAQTPLHVSAGYNKA---EIVKSLLEWPGNDKVELEAQ 81 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~----~~~~~~~~~~~~g~t~Lh~A~~~g~~---~~v~~Ll~~~~~~~~~~~~~ 81 (316)
.+..|.||||+||+.|+...+..+... .+..++..+.. |.||||+|+..|+. +++++|++ .|++++.+
T Consensus 13 ~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~-g~t~Lh~a~~~~~~~~~e~v~~Ll~----~gadin~~ 87 (154)
T PHA02736 13 PDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRH-GKQCVHIVSNPDKADPQEKLKLLME----WGADINGK 87 (154)
T ss_pred cCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCC-CCEEEEeecccCchhHHHHHHHHHH----cCCCcccc
Confidence 466899999999999985332221111 11223445655 99999999999987 46889999 78899999
Q ss_pred c-CCCChHHHHHHHcCCHHHHHHHHh-cCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCC
Q 021192 82 N-MYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS 149 (316)
Q Consensus 82 ~-~~g~t~Lh~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~ 149 (316)
| ..|+||||+|+..++.+++++|+. .|++++.+|..|.||||+|+ ..++.+++++|+++|++++
T Consensus 88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~----~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVAC----ERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCC
Confidence 8 589999999999999999999998 49999999999999999999 8899999999999999875
No 44
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.91 E-value=2.8e-24 Score=202.11 Aligned_cols=159 Identities=31% Similarity=0.373 Sum_probs=116.2
Q ss_pred CChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHH
Q 021192 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (316)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~ 91 (316)
+|.||||.|+..|+.+.++.++ +.+...+..... |.|+||.|...+...+++.+++ .|++++.++.+|.||||.
T Consensus 473 ~G~T~Lhlaaq~Gh~~~~~lll-e~~~~~~~~~~~-~l~~lhla~~~~~v~~~~~l~~----~ga~v~~~~~r~~TpLh~ 546 (1143)
T KOG4177|consen 473 QGFTPLHLAAQEGHTEVVQLLL-EGGANDNLDAKK-GLTPLHLAADEDTVKVAKILLE----HGANVDLRTGRGYTPLHV 546 (1143)
T ss_pred ccCcchhhhhccCCchHHHHhh-hcCCccCccchh-ccchhhhhhhhhhHHHHHHHhh----cCCceehhcccccchHHH
Confidence 3444444444444444444333 222222332222 4444444444444444444444 788899999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHH
Q 021192 92 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKL 171 (316)
Q Consensus 92 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~ 171 (316)
||..|+..+|++|+++|+|++++++.|+||||.|| ..|+.+|+++|+++||++|..|.+|.|||+.++. .+...+
T Consensus 547 A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa----~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~-lg~~~~ 621 (1143)
T KOG4177|consen 547 AVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAA----QQGHNDIAELLLKHGASVNAADLDGFTPLHIAVR-LGYLSV 621 (1143)
T ss_pred HHhcCCchHHHHhhhCCccccccCCCCCChhhHHH----HcChHHHHHHHHHcCCCCCcccccCcchhHHHHH-hcccch
Confidence 99999999999999999999999999999999999 8899999999999999999999999999966555 556666
Q ss_pred HHHHHHhHHH
Q 021192 172 RELLLWHSEE 181 (316)
Q Consensus 172 ~~lL~~~~~~ 181 (316)
.++|...+..
T Consensus 622 ~k~l~~~~~~ 631 (1143)
T KOG4177|consen 622 VKLLKVVTAT 631 (1143)
T ss_pred hhHHHhccCc
Confidence 6777666554
No 45
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.91 E-value=3.2e-24 Score=163.51 Aligned_cols=166 Identities=24% Similarity=0.228 Sum_probs=149.2
Q ss_pred ccccCCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCC
Q 021192 5 QDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY 84 (316)
Q Consensus 5 ~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 84 (316)
+....+++|++.++.|+-+|+...+..+| ..+...|..+.. +++|+.+++...+++++..+.+ ..+|..|+.
T Consensus 88 ~~~~t~p~g~~~~~v~ap~~s~~k~sttl-tN~~rgnevs~~-p~s~~slsVhql~L~~~~~~~~------n~VN~~De~ 159 (296)
T KOG0502|consen 88 AIDETDPEGWSALLVAAPCGSVDKVSTTL-TNGARGNEVSLM-PWSPLSLSVHQLHLDVVDLLVN------NKVNACDEF 159 (296)
T ss_pred CCCCCCchhhhhhhhcCCCCCcceeeeee-cccccCCccccc-cCChhhHHHHHHHHHHHHHHhh------ccccCcccc
Confidence 33445777999999999999998888777 567888888865 9999999999999999988877 458899999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccC
Q 021192 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (316)
Q Consensus 85 g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~ 164 (316)
|.|||.||+.+|+..+|++|++.|+++++..++-.|+|.+|+ +.|..++|++|+.++.|+|..|.+|-||| ..|.
T Consensus 160 GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt----~ggytdiV~lLL~r~vdVNvyDwNGgTpL-lyAv 234 (296)
T KOG0502|consen 160 GFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLAT----RGGYTDIVELLLTREVDVNVYDWNGGTPL-LYAV 234 (296)
T ss_pred CchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHh----cCChHHHHHHHHhcCCCcceeccCCCcee-eeee
Confidence 999999999999999999999999999999999999999999 99999999999999999999999999999 6666
Q ss_pred CCChHHHHHHHHHhHHHHH
Q 021192 165 GPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 165 ~~~~~~~~~lL~~~~~~~~ 183 (316)
++++..+++.|+..|++..
T Consensus 235 rgnhvkcve~Ll~sGAd~t 253 (296)
T KOG0502|consen 235 RGNHVKCVESLLNSGADVT 253 (296)
T ss_pred cCChHHHHHHHHhcCCCcc
Confidence 7888889998888876644
No 46
>PHA02795 ankyrin-like protein; Provisional
Probab=99.90 E-value=6e-23 Score=177.89 Aligned_cols=165 Identities=15% Similarity=0.055 Sum_probs=133.4
Q ss_pred CCCcccccCCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCC----CCCCcHHHHHHhCCCHHHHHHHHcCCCCCcc
Q 021192 1 MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNP----VMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76 (316)
Q Consensus 1 ~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~ 76 (316)
+++|+|.+. ..+.||||.|+..|+.++++.|+..+..+.+..+. ..+.||+|.|+..++.+++++|++ .|+
T Consensus 138 I~~GADIn~-~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs----~GA 212 (437)
T PHA02795 138 VDHGAVIYK-IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP----YIE 212 (437)
T ss_pred HHCCCCCCC-CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh----CcC
Confidence 357888876 45589999999999999999998654333333211 127899999999999999999999 899
Q ss_pred ccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccC--------cHHHHHHHHhcCCCC
Q 021192 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSE--------DYATVKTLLEYNADC 148 (316)
Q Consensus 77 ~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~--------~~~~~~~Ll~~ga~~ 148 (316)
++|.+|..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+ ..| +.+++++|+++|+++
T Consensus 213 DIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa----~~g~~~~~~~~~~eIvelLL~~gadI 288 (437)
T PHA02795 213 DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAV----DRGSVIARRETHLKILEILLREPLSI 288 (437)
T ss_pred CcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH----HcCCcccccccHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999 555 579999999999998
Q ss_pred CCCCCCCCCccccccCCCChHHHHHHHHHhHH
Q 021192 149 SAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180 (316)
Q Consensus 149 ~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~ 180 (316)
+..... ++.. . .....+.+.+..+..
T Consensus 289 ~~~~~~---~~~~-~--~~n~~~ik~lI~y~~ 314 (437)
T PHA02795 289 DCIKLA---ILNN-T--IENHDVIKLCIKYFM 314 (437)
T ss_pred CchhHH---hhhc-c--cchHHHHHHHHHHHH
Confidence 875433 3211 1 114566666665553
No 47
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.90 E-value=3.9e-22 Score=166.42 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=128.1
Q ss_pred CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCC---CCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccc-cCCC
Q 021192 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERN---PVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYG 85 (316)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~---~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g 85 (316)
+....++||.|+..|+.++++.|+ +.|+++|.++ ...|.||||+|+..|+.+++++|++ .|++++.+ +..|
T Consensus 30 ~~~~~~lL~~A~~~~~~eivk~LL-~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~----~GADVN~~~~~~g 104 (300)
T PHA02884 30 KICIANILYSSIKFHYTDIIDAIL-KLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIR----YGADVNRYAEEAK 104 (300)
T ss_pred cCCCCHHHHHHHHcCCHHHHHHHH-HCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCcCcccCCCC
Confidence 334566788888889999999888 6788999874 2349999999999999999999999 89999986 4689
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCC
Q 021192 86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165 (316)
Q Consensus 86 ~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~ 165 (316)
.||||+|+..++.+++++|++.|++++.+|..|.||||+|+ +.++.+++.++. |.. .+..+.+|+++.
T Consensus 105 ~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~----~~~~~~~~~~~~--~~~---~~~~~~~~~~~~--- 172 (300)
T PHA02884 105 ITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELAL----MICNNFLAFMIC--DNE---ISNFYKHPKKIL--- 172 (300)
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HhCChhHHHHhc--CCc---ccccccChhhhh---
Confidence 99999999999999999999999999999999999999999 667777776654 322 455677888543
Q ss_pred CChHHHHHHHHHhHHH
Q 021192 166 PGSAKLRELLLWHSEE 181 (316)
Q Consensus 166 ~~~~~~~~lL~~~~~~ 181 (316)
...++.++|..|..-
T Consensus 173 -~n~ei~~~Lish~vl 187 (300)
T PHA02884 173 -INFDILKILVSHFIL 187 (300)
T ss_pred -ccHHHHHHHHHHHHH
Confidence 246788888888763
No 48
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.90 E-value=1.1e-23 Score=163.48 Aligned_cols=140 Identities=19% Similarity=0.151 Sum_probs=117.8
Q ss_pred CCCcccCCCCCCCCcHHHHHHhCCCH----HHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHH---HHHHHhcC
Q 021192 36 NPSLLNERNPVMAQTPLHVSAGYNKA----EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA---AKLLLAHG 108 (316)
Q Consensus 36 ~~~~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~---~~~Ll~~g 108 (316)
++.+++..+.. +.++||.||+.|+. +++++|++ .+.+++.+|..|+||||+|+..|+.+. +++|++.|
T Consensus 9 ~~~~~~~~~~~-~~~~l~~a~~~g~~~~l~~~~~~l~~----~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G 83 (166)
T PHA02743 9 NNLGAVEIDED-EQNTFLRICRTGNIYELMEVAPFISG----DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMG 83 (166)
T ss_pred cchHHhhhccC-CCcHHHHHHHcCCHHHHHHHHHHHhh----cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcC
Confidence 34566666655 88999999999998 55666776 788899999999999999999988654 89999999
Q ss_pred CCccccc-cCCCcHHHHHhhhhhccCcHHHHHHHHh-cCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhHHHHHHH
Q 021192 109 AFIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185 (316)
Q Consensus 109 ~~~~~~~-~~g~t~L~~a~~~~~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (316)
+++|.+| ..|.||||+|+ ..++.+++++|+. .|++++.+|..|+||||+|+.. +...++++|..++++...+
T Consensus 84 adin~~d~~~g~TpLh~A~----~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~-~~~~iv~~Ll~~ga~~~~~ 157 (166)
T PHA02743 84 ADINARELGTGNTLLHIAA----STKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKM-RDRRMMEILRANGAVCDDP 157 (166)
T ss_pred CCCCCCCCCCCCcHHHHHH----HhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc
Confidence 9999998 58999999999 8899999999995 8999999999999999776654 4567888888877654433
No 49
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.89 E-value=2.2e-23 Score=196.23 Aligned_cols=173 Identities=32% Similarity=0.417 Sum_probs=152.2
Q ss_pred CCcccccC-CCCChhhHHHHHhcC-CHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccc
Q 021192 2 QKNQDRRS-RSAKPATIHGCAQSG-DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79 (316)
Q Consensus 2 ~~~~~~~~-~~~~~t~L~~A~~~g-~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 79 (316)
+++++.+. +..|.|++|.|+..| ..+... ++.+.+.++|..... |.||||.|+..|+.++++.|++ .++..+
T Consensus 428 ~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~-~l~~~g~~~n~~s~~-G~T~Lhlaaq~Gh~~~~~llle----~~~~~~ 501 (1143)
T KOG4177|consen 428 KRGASPNAKAKLGYTPLHVAAKKGRYLQIAR-LLLQYGADPNAVSKQ-GFTPLHLAAQEGHTEVVQLLLE----GGANDN 501 (1143)
T ss_pred ccCCChhhHhhcCCChhhhhhhcccHhhhhh-hHhhcCCCcchhccc-cCcchhhhhccCCchHHHHhhh----cCCccC
Confidence 44566664 677899999999999 455555 555789999999877 9999999999999999999999 667778
Q ss_pred cccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCcc
Q 021192 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159 (316)
Q Consensus 80 ~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl 159 (316)
...+.|-|+||.|...++..+++.++++|++++.++..|.||||.|| ..|+.++|++|+++|+|++.+++.|+|||
T Consensus 502 ~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~----~~g~v~~VkfLLe~gAdv~ak~~~G~TPL 577 (1143)
T KOG4177|consen 502 LDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAV----HYGNVDLVKFLLEHGADVNAKDKLGYTPL 577 (1143)
T ss_pred ccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHH----hcCCchHHHHhhhCCccccccCCCCCChh
Confidence 88888999999999999999999999999999999999999999999 88999999999999999999999999999
Q ss_pred ccccCCCChHHHHHHHHHhHHHHHHH
Q 021192 160 DHLSNGPGSAKLRELLLWHSEEQRKR 185 (316)
Q Consensus 160 ~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (316)
|.||..+ ..+++++|.++|+..+..
T Consensus 578 H~Aa~~G-~~~i~~LLlk~GA~vna~ 602 (1143)
T KOG4177|consen 578 HQAAQQG-HNDIAELLLKHGASVNAA 602 (1143)
T ss_pred hHHHHcC-hHHHHHHHHHcCCCCCcc
Confidence 8887766 888999999998765543
No 50
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.89 E-value=9.9e-24 Score=167.32 Aligned_cols=153 Identities=27% Similarity=0.380 Sum_probs=127.4
Q ss_pred HHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCC
Q 021192 18 HGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC 97 (316)
Q Consensus 18 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~ 97 (316)
+-=|+.|+.-.|+..|.....+.|.-|+. |.+||||||+.|+..+|+.||. .|+.+|..+.-..||||+|+..||
T Consensus 5 f~wcregna~qvrlwld~tehdln~gddh-gfsplhwaakegh~aivemll~----rgarvn~tnmgddtplhlaaahgh 79 (448)
T KOG0195|consen 5 FGWCREGNAFQVRLWLDDTEHDLNVGDDH-GFSPLHWAAKEGHVAIVEMLLS----RGARVNSTNMGDDTPLHLAAAHGH 79 (448)
T ss_pred hhhhhcCCeEEEEEEecCccccccccccc-CcchhhhhhhcccHHHHHHHHh----cccccccccCCCCcchhhhhhccc
Confidence 33467777777777787777888888876 9999999999999999999999 788899999888999999999999
Q ss_pred HHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHH
Q 021192 98 NEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW 177 (316)
Q Consensus 98 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~ 177 (316)
-++|+.|++..+|+|+.+..|.|||||||.| |...+++-|+..||.++.-|++|.|||+.+ .......+.++-.+
T Consensus 80 rdivqkll~~kadvnavnehgntplhyacfw----gydqiaedli~~ga~v~icnk~g~tpldka-kp~l~~~l~e~aek 154 (448)
T KOG0195|consen 80 RDIVQKLLSRKADVNAVNEHGNTPLHYACFW----GYDQIAEDLISCGAAVNICNKKGMTPLDKA-KPMLKNTLLEIAEK 154 (448)
T ss_pred HHHHHHHHHHhcccchhhccCCCchhhhhhh----cHHHHHHHHHhccceeeecccCCCCchhhh-chHHHHHHHHHHHH
Confidence 9999999999999999999999999999966 456899999999999999999999999544 32333444444444
Q ss_pred hHH
Q 021192 178 HSE 180 (316)
Q Consensus 178 ~~~ 180 (316)
+|.
T Consensus 155 ~gq 157 (448)
T KOG0195|consen 155 HGQ 157 (448)
T ss_pred hCC
Confidence 443
No 51
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.2e-22 Score=173.89 Aligned_cols=150 Identities=33% Similarity=0.448 Sum_probs=122.7
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCC---------------
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN--------------- 73 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--------------- 73 (316)
.+.+|.|+||.||...+.++|++|+ +.+.++|..|.. |+||||.|+..||..++++|++++++
T Consensus 69 ~n~DglTalhq~~id~~~e~v~~l~-e~ga~Vn~~d~e-~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~ 146 (527)
T KOG0505|consen 69 CNVDGLTALHQACIDDNLEMVKFLV-ENGANVNAQDNE-GWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLA 146 (527)
T ss_pred cCCccchhHHHHHhcccHHHHHHHH-HhcCCccccccc-cCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccc
Confidence 4678899999999999999999887 678899999887 99999999999999999999986442
Q ss_pred ----------------------------------------CccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccc
Q 021192 74 ----------------------------------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA 113 (316)
Q Consensus 74 ----------------------------------------~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~ 113 (316)
.|.+.++.+..|.|.||.|+.+|..++.++|+..|.++++
T Consensus 147 e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~ 226 (527)
T KOG0505|consen 147 EDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNI 226 (527)
T ss_pred cCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccc
Confidence 2233344454588888888888888888888888888888
Q ss_pred cccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccC
Q 021192 114 KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (316)
Q Consensus 114 ~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~ 164 (316)
+|.+|+||||.|+.| +..+++++|+++|++++.....|.||++.+..
T Consensus 227 ~D~dgWtPlHAAA~W----g~~~~~elL~~~ga~~d~~t~~g~~p~dv~de 273 (527)
T KOG0505|consen 227 KDYDGWTPLHAAAHW----GQEDACELLVEHGADMDAKTKMGETPLDVADE 273 (527)
T ss_pred ccccCCCcccHHHHh----hhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence 888888888888855 45788888888888888888888888876543
No 52
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=6.3e-22 Score=169.50 Aligned_cols=163 Identities=30% Similarity=0.350 Sum_probs=142.3
Q ss_pred CCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHH
Q 021192 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (316)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh 90 (316)
....-.+..||..|+.+-|..||. .+..+|..+.+ |.|+||-+|...+.+||++|++ .|++||..|..||||||
T Consensus 38 f~~sa~~l~A~~~~d~~ev~~ll~-~ga~~~~~n~D-glTalhq~~id~~~e~v~~l~e----~ga~Vn~~d~e~wtPlh 111 (527)
T KOG0505|consen 38 FEDSAVFLEACSRGDLEEVRKLLN-RGASPNLCNVD-GLTALHQACIDDNLEMVKFLVE----NGANVNAQDNEGWTPLH 111 (527)
T ss_pred CCchHHHHhccccccHHHHHHHhc-cCCCccccCCc-cchhHHHHHhcccHHHHHHHHH----hcCCccccccccCCcch
Confidence 334445778999999999999994 56777888766 9999999999999999999999 89999999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCcc----------------------------------------------------------
Q 021192 91 MAAKNGCNEAAKLLLAHGAFIE---------------------------------------------------------- 112 (316)
Q Consensus 91 ~a~~~~~~~~~~~Ll~~g~~~~---------------------------------------------------------- 112 (316)
.|+.+|+..++++|+..|+++-
T Consensus 112 aaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~ 191 (527)
T KOG0505|consen 112 AAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAEL 191 (527)
T ss_pred hhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccc
Confidence 9999999999999999887433
Q ss_pred -ccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhHHHHHH
Q 021192 113 -AKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 184 (316)
Q Consensus 113 -~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~ 184 (316)
+.+..|.|.||.|+ .+|..++.++|+++|.+++.+|.+||||| |||...+...++++|..++.+...
T Consensus 192 d~~~~rG~T~lHvAa----a~Gy~e~~~lLl~ag~~~~~~D~dgWtPl-HAAA~Wg~~~~~elL~~~ga~~d~ 259 (527)
T KOG0505|consen 192 DARHARGATALHVAA----ANGYTEVAALLLQAGYSVNIKDYDGWTPL-HAAAHWGQEDACELLVEHGADMDA 259 (527)
T ss_pred cccccccchHHHHHH----hhhHHHHHHHHHHhccCcccccccCCCcc-cHHHHhhhHhHHHHHHHhhcccch
Confidence 33335899999999 89999999999999999999999999999 677777888899999999876443
No 53
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.88 E-value=3.2e-22 Score=147.07 Aligned_cols=120 Identities=33% Similarity=0.358 Sum_probs=108.5
Q ss_pred HHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhh
Q 021192 51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSI 130 (316)
Q Consensus 51 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~ 130 (316)
.+-+|+..+....|+.||+. ...-+|.+|.+|.||||-|+++|+.++++.|+..|++++++...|+||||.||
T Consensus 66 l~lwaae~nrl~eV~~lL~e---~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAc---- 138 (228)
T KOG0512|consen 66 LLLWAAEKNRLTEVQRLLSE---KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSAC---- 138 (228)
T ss_pred HHHHHHhhccHHHHHHHHHh---ccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhh----
Confidence 36789999999999999983 34468999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHH
Q 021192 131 RSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW 177 (316)
Q Consensus 131 ~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~ 177 (316)
+-.+.+++.+|+++|+|+|......+||||.+|...+......+|+.
T Consensus 139 kWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~ 185 (228)
T KOG0512|consen 139 KWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLH 185 (228)
T ss_pred cccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhh
Confidence 66789999999999999999999999999988877777776666653
No 54
>PHA02917 ankyrin-like protein; Provisional
Probab=99.87 E-value=1.1e-21 Score=181.91 Aligned_cols=154 Identities=19% Similarity=0.128 Sum_probs=121.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHH--HhCCCHHHHHHHHcCCCCCccccccccC---CC------
Q 021192 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVS--AGYNKAEIVKSLLEWPGNDKVELEAQNM---YG------ 85 (316)
Q Consensus 17 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~---~g------ 85 (316)
+|+|+..|+.++|+.|+ +.|+++|..+.. |.||||+| +..|+.+++++|++ .|++++.+|. .|
T Consensus 107 ~~~a~~~~~~e~vk~Ll-~~Gadin~~d~~-g~T~L~~~~a~~~~~~eivklLi~----~Ga~vn~~d~~~~~g~~~~~~ 180 (661)
T PHA02917 107 SYMKSKNVDVDLIKVLV-EHGFDLSVKCEN-HRSVIENYVMTDDPVPEIIDLFIE----NGCSVLYEDEDDEYGYAYDDY 180 (661)
T ss_pred HHHHhhcCCHHHHHHHH-HcCCCCCccCCC-CccHHHHHHHccCCCHHHHHHHHH----cCCCccccccccccccccccc
Confidence 34444445666777666 578999999876 99999964 35789999999999 7888876553 34
Q ss_pred -----ChHHHHHHH-----------cCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcH--HHHHHHHhcCCC
Q 021192 86 -----ETPLHMAAK-----------NGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDY--ATVKTLLEYNAD 147 (316)
Q Consensus 86 -----~t~Lh~a~~-----------~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~--~~~~~Ll~~ga~ 147 (316)
.||||+|+. .++.+++++|++.|+++|.+|.+|.||||+|+ ..++. ++|++|++ |++
T Consensus 181 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~----~~g~~~~eivk~Li~-g~d 255 (661)
T PHA02917 181 QPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYI----KSSHIDIDIVKLLMK-GID 255 (661)
T ss_pred cccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHH----HcCCCcHHHHHHHHh-CCc
Confidence 599999986 46899999999999999999999999999999 77774 79999975 888
Q ss_pred CC----CCCCCCCCccccccC------CC--ChHHHHHHHHHhHHH
Q 021192 148 CS----AKDNEGKTPLDHLSN------GP--GSAKLRELLLWHSEE 181 (316)
Q Consensus 148 ~~----~~~~~g~tpl~~~a~------~~--~~~~~~~lL~~~~~~ 181 (316)
++ ..|..|.+|+++++. .. -..+++++|.+.|++
T Consensus 256 ~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~ 301 (661)
T PHA02917 256 NTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP 301 (661)
T ss_pred ccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence 75 456678888866652 11 256888999988864
No 55
>PHA02730 ankyrin-like protein; Provisional
Probab=99.87 E-value=1.1e-21 Score=178.03 Aligned_cols=156 Identities=19% Similarity=0.186 Sum_probs=129.8
Q ss_pred hHHHHHhcC---CHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCC----HHHHHHHHcCCCCCcc--ccccccCCCC
Q 021192 16 TIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK----AEIVKSLLEWPGNDKV--ELEAQNMYGE 86 (316)
Q Consensus 16 ~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~~~~--~~~~~~~~g~ 86 (316)
.||.=...+ +.++++.|+ ++|+++|.. . .|.||||+|+..++ .+++++|++ .|+ +++.+|..|.
T Consensus 346 ~l~~Y~~~~~~v~ieIvelLI-s~GAdIN~k-~-~G~TpLH~Aa~~nnn~i~~eIvelLIs----~Ga~~dIN~kd~~G~ 418 (672)
T PHA02730 346 MLINYLHYGDMVSIPILRCML-DNGATMDKT-T-DNNYPLHDYFVNNNNIVDVNVVRFIVE----NNGHMAINHVSNNGR 418 (672)
T ss_pred HHHHHHhcCCcCcHHHHHHHH-HCCCCCCcC-C-CCCcHHHHHHHHcCCcchHHHHHHHHH----cCCCccccccccCCC
Confidence 566555555 588888777 678999985 3 49999999998875 899999999 555 7899999999
Q ss_pred hHHHH---HHHcC---------CHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCC-
Q 021192 87 TPLHM---AAKNG---------CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN- 153 (316)
Q Consensus 87 t~Lh~---a~~~~---------~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~- 153 (316)
||||. |...+ ..+++++|+++|+++|++|..|.||||+|+ ..++.+++++|+++||+++.++.
T Consensus 419 T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa----~~~~~eive~LI~~GAdIN~~d~~ 494 (672)
T PHA02730 419 LCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAV----DVNNIQFARRLLEYGASVNTTSRS 494 (672)
T ss_pred chHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHH----HhCCHHHHHHHHHCCCCCCCCCCc
Confidence 99994 33232 235799999999999999999999999999 88899999999999999999997
Q ss_pred CCCCccccccCC-CChHHHHHHHHHhHHHH
Q 021192 154 EGKTPLDHLSNG-PGSAKLRELLLWHSEEQ 182 (316)
Q Consensus 154 ~g~tpl~~~a~~-~~~~~~~~lL~~~~~~~ 182 (316)
.|.||||+++.. .+..+++++|+++++..
T Consensus 495 ~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i 524 (672)
T PHA02730 495 IINTAIQKSSYRRENKTKLVDLLLSYHPTL 524 (672)
T ss_pred CCcCHHHHHHHhhcCcHHHHHHHHHcCCCH
Confidence 599999887753 35688889998887643
No 56
>PHA02730 ankyrin-like protein; Provisional
Probab=99.87 E-value=8.3e-22 Score=178.76 Aligned_cols=168 Identities=16% Similarity=0.074 Sum_probs=116.8
Q ss_pred cCCCCChhhHHHHHhcC---CHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCC--CHHHHHHHHcCCCCCcccccccc
Q 021192 8 RSRSAKPATIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQN 82 (316)
Q Consensus 8 ~~~~~~~t~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~ 82 (316)
..+..|+||||+|+..| +.++|+.|| +.|++++.+|.. |.||||+|+..+ +.++|++|++.++ +++++..+
T Consensus 36 ~kd~~G~TaLh~A~~~~~~~~~eivklLL-s~GAdin~kD~~-G~TPLh~Aa~~~~~~~eIv~~Ll~~~~--~~~~~~~~ 111 (672)
T PHA02730 36 HIDRRGNNALHCYVSNKCDTDIKIVRLLL-SRGVERLCRNNE-GLTPLGVYSKRKYVKSQIVHLLISSYS--NASNELTS 111 (672)
T ss_pred hcCCCCCcHHHHHHHcCCcCcHHHHHHHH-hCCCCCcccCCC-CCChHHHHHHcCCCcHHHHHHHHhcCC--CCCccccc
Confidence 45678999999999997 589999888 689999999987 999999999876 7999999999432 34456666
Q ss_pred CCCChHHHHHHH--cCCHHHHHHHHh-cCCCcccccc-----CCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCC-----
Q 021192 83 MYGETPLHMAAK--NGCNEAAKLLLA-HGAFIEAKAN-----NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS----- 149 (316)
Q Consensus 83 ~~g~t~Lh~a~~--~~~~~~~~~Ll~-~g~~~~~~~~-----~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~----- 149 (316)
.-+.+|||.++. .++.+++++|+. .+++++...+ .|.+|++++. ..+++++|++|+++||+++
T Consensus 112 ~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~----~~~~~eIvklLi~~g~~v~g~~~~ 187 (672)
T PHA02730 112 NINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTT----PNPRPEVLLWLLKSECYSTGYVFR 187 (672)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhc----CCCchHHHHHHHHcCCcccccccc
Confidence 666777777666 666777777775 4566665432 5667777777 6666777777777777664
Q ss_pred --CCCCCCCCcccc-c-----cCCCChHHHHHHHHHhHHHHH
Q 021192 150 --AKDNEGKTPLDH-L-----SNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 150 --~~~~~g~tpl~~-~-----a~~~~~~~~~~lL~~~~~~~~ 183 (316)
..+..+.+|+-+ + ....+..+++++|.++|++..
T Consensus 188 ~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN 229 (672)
T PHA02730 188 SCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIH 229 (672)
T ss_pred cccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCC
Confidence 133333333322 1 124445666666666666544
No 57
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.6e-22 Score=166.32 Aligned_cols=104 Identities=23% Similarity=0.351 Sum_probs=94.9
Q ss_pred HHHHHhhhhchHHHHHHHHHHHH-HHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCee
Q 021192 201 LENELSNIVGLHELKIQLRKWAK-GMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (316)
Q Consensus 201 ~~~~l~~i~~~~~~k~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~ 279 (316)
....+.++.|+++..+++++.+. .+..+......|+ .+|.++++|||||||||.+|||+|+.... .|+
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI----~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-------tFI 214 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI----DPPKGVLLYGPPGTGKTLLAKAVANQTDA-------TFI 214 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC----CCCCceEeeCCCCCcHHHHHHHHHhccCc-------eEE
Confidence 34568889999999999998666 4566777778887 68899999999999999999999999999 999
Q ss_pred eecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 280 EVQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.+.++++|.||+|+++..+|++|+.|++.+||||||
T Consensus 215 rvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFi 250 (406)
T COG1222 215 RVVGSELVQKYIGEGARLVRELFELAREKAPSIIFI 250 (406)
T ss_pred EeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEE
Confidence 999999999999999999999999999999999998
No 58
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.87 E-value=1.4e-22 Score=155.77 Aligned_cols=133 Identities=22% Similarity=0.209 Sum_probs=105.0
Q ss_pred ccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCC---CCccccccccCCCChHHHHHHHcCCH---HHHHHHHhcCCCccc
Q 021192 40 LNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG---NDKVELEAQNMYGETPLHMAAKNGCN---EAAKLLLAHGAFIEA 113 (316)
Q Consensus 40 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~---~~~~~~~~~~~~g~t~Lh~a~~~~~~---~~~~~Ll~~g~~~~~ 113 (316)
.+.+|.. |.||||+|++.|+. +.++..... ..+..++.+|..|+||||+|+..++. +++++|++.|++++.
T Consensus 10 ~~~~d~~-g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~ 86 (154)
T PHA02736 10 ASEPDIE-GENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADING 86 (154)
T ss_pred HHhcCCC-CCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccc
Confidence 4455654 99999999999984 333332100 01223456788999999999999987 468999999999999
Q ss_pred cc-cCCCcHHHHHhhhhhccCcHHHHHHHHh-cCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhHH
Q 021192 114 KA-NNGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180 (316)
Q Consensus 114 ~~-~~g~t~L~~a~~~~~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~ 180 (316)
++ ..|+||||+|+ ..++.+++++|+. .|++++.+|..|+||||+|+.. +...++++|..+++
T Consensus 87 ~~~~~g~T~Lh~A~----~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~-~~~~i~~~Ll~~ga 150 (154)
T PHA02736 87 KERVFGNTPLHIAV----YTQNYELATWLCNQPGVNMEILNYAFKTPYYVACER-HDAKMMNILRAKGA 150 (154)
T ss_pred cCCCCCCcHHHHHH----HhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHc-CCHHHHHHHHHcCC
Confidence 98 49999999999 8899999999997 5999999999999999777654 45677777776653
No 59
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.87 E-value=1.3e-21 Score=163.22 Aligned_cols=124 Identities=25% Similarity=0.290 Sum_probs=105.4
Q ss_pred CCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccc----cCCCChHHHHHHHcCCHHHHHHHHhcCCCcccc-ccC
Q 021192 43 RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ----NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAK-ANN 117 (316)
Q Consensus 43 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~----~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~-~~~ 117 (316)
+|...-.++||.|+..|+.+++++|++ .|++++.+ +..|.||||+|+..++.+++++|+++|+++|.. +..
T Consensus 28 ~d~~~~~~lL~~A~~~~~~eivk~LL~----~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~ 103 (300)
T PHA02884 28 KNKICIANILYSSIKFHYTDIIDAILK----LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEA 103 (300)
T ss_pred cCcCCCCHHHHHHHHcCCHHHHHHHHH----CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCC
Confidence 343423356777888899999999999 78899987 468999999999999999999999999999986 468
Q ss_pred CCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHH
Q 021192 118 GMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 175 (316)
Q Consensus 118 g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL 175 (316)
|.||||+|+ ..++.+++++|+.+|++++.+|..|.||||+|+...+ ..+..++
T Consensus 104 g~TpLh~Aa----~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~-~~~~~~~ 156 (300)
T PHA02884 104 KITPLYISV----LHGCLKCLEILLSYGADINIQTNDMVTPIELALMICN-NFLAFMI 156 (300)
T ss_pred CCCHHHHHH----HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCC-hhHHHHh
Confidence 999999999 8899999999999999999999999999977765443 3444444
No 60
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.86 E-value=1.8e-21 Score=154.53 Aligned_cols=128 Identities=30% Similarity=0.377 Sum_probs=112.8
Q ss_pred CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHH
Q 021192 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (316)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L 89 (316)
++-|.+|||+||+.|+..++..|| ..|+.+|..+.. ..||||+|+..||.++|+.||+ .++|+|..+..|+|||
T Consensus 31 ddhgfsplhwaakegh~aivemll-~rgarvn~tnmg-ddtplhlaaahghrdivqkll~----~kadvnavnehgntpl 104 (448)
T KOG0195|consen 31 DDHGFSPLHWAAKEGHVAIVEMLL-SRGARVNSTNMG-DDTPLHLAAAHGHRDIVQKLLS----RKADVNAVNEHGNTPL 104 (448)
T ss_pred cccCcchhhhhhhcccHHHHHHHH-hcccccccccCC-CCcchhhhhhcccHHHHHHHHH----HhcccchhhccCCCch
Confidence 566899999999999999999888 678999998875 7899999999999999999999 8899999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHH----hcCCCCCCC
Q 021192 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL----EYNADCSAK 151 (316)
Q Consensus 90 h~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll----~~ga~~~~~ 151 (316)
||||..|.-.+++-|+++|+.+++.+++|.|||..|- +.+.+.|+ ++|-++|..
T Consensus 105 hyacfwgydqiaedli~~ga~v~icnk~g~tpldkak--------p~l~~~l~e~aek~gq~~nri 162 (448)
T KOG0195|consen 105 HYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK--------PMLKNTLLEIAEKHGQSPNRI 162 (448)
T ss_pred hhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc--------hHHHHHHHHHHHHhCCCCCcc
Confidence 9999999999999999999999999999999999875 23333333 457777643
No 61
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.85 E-value=1.7e-20 Score=175.03 Aligned_cols=101 Identities=28% Similarity=0.336 Sum_probs=96.4
Q ss_pred HHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhh
Q 021192 51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSI 130 (316)
Q Consensus 51 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~ 130 (316)
.|+.|+..|+.++++.|++ .|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 85 ~L~~aa~~G~~~~vk~LL~----~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~---- 156 (664)
T PTZ00322 85 ELCQLAASGDAVGARILLT----GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAE---- 156 (664)
T ss_pred HHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----
Confidence 5889999999999999999 78999999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHhc-------CCCCCCCCCCCCCcc
Q 021192 131 RSEDYATVKTLLEY-------NADCSAKDNEGKTPL 159 (316)
Q Consensus 131 ~~~~~~~~~~Ll~~-------ga~~~~~~~~g~tpl 159 (316)
..++.+++++|+++ |++++..+..|.+|+
T Consensus 157 ~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~ 192 (664)
T PTZ00322 157 ENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPS 192 (664)
T ss_pred HCCcHHHHHHHHhCCCcccccCCCCCccccCCCCcc
Confidence 89999999999998 889988888888887
No 62
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.84 E-value=1.7e-20 Score=130.28 Aligned_cols=89 Identities=42% Similarity=0.582 Sum_probs=61.8
Q ss_pred HHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhc
Q 021192 52 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIR 131 (316)
Q Consensus 52 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~ 131 (316)
||+|++.|+.+++++|++ .+.+++. |+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+ .
T Consensus 1 L~~A~~~~~~~~~~~ll~----~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~ 68 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLE----KGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAA----E 68 (89)
T ss_dssp HHHHHHTTTHHHHHHHHH----TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHH----H
T ss_pred CHHHHHcCCHHHHHHHHH----CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHH----H
Confidence 677777777777777777 4455544 667777777777777777777777777777777777777777 6
Q ss_pred cCcHHHHHHHHhcCCCCCCCC
Q 021192 132 SEDYATVKTLLEYNADCSAKD 152 (316)
Q Consensus 132 ~~~~~~~~~Ll~~ga~~~~~~ 152 (316)
.++.+++++|+++|++++.+|
T Consensus 69 ~~~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 69 NGNLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp TTHHHHHHHHHHTTT-TTSS-
T ss_pred cCCHHHHHHHHHcCCCCCCcC
Confidence 677777777777777777654
No 63
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.84 E-value=1.5e-20 Score=179.18 Aligned_cols=122 Identities=30% Similarity=0.267 Sum_probs=89.5
Q ss_pred CCcHHHHHHhCCCHHHHHHHHcCCCCCcccccccc--------------CCCChHHHHHHHcCCHHHHHHHHhcCCCccc
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN--------------MYGETPLHMAAKNGCNEAAKLLLAHGAFIEA 113 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~--------------~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~ 113 (316)
|.||||+|+..|+.++|++|++ .|++++.++ ..|.||||.|+..++.+++++|++.|+|++.
T Consensus 128 G~TpLhlAa~~~~~eiVklLL~----~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~ 203 (743)
T TIGR00870 128 GITALHLAAHRQNYEIVKLLLE----RGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILT 203 (743)
T ss_pred CCcHHHHHHHhCCHHHHHHHHh----CCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhh
Confidence 8888888888888888888888 666776543 3578888888888888888888888888888
Q ss_pred cccCCCcHHHHHhhhhhccC---------cHHHHHHHHhcCCCC-------CCCCCCCCCccccccCCCChHHHHHHHHH
Q 021192 114 KANNGMTPLHLSVWYSIRSE---------DYATVKTLLEYNADC-------SAKDNEGKTPLDHLSNGPGSAKLRELLLW 177 (316)
Q Consensus 114 ~~~~g~t~L~~a~~~~~~~~---------~~~~~~~Ll~~ga~~-------~~~~~~g~tpl~~~a~~~~~~~~~~lL~~ 177 (316)
+|..|+||||+|+ ..+ ...+.+++++.+++. +.+|.+|.||||+|+..+ +.++.++|+.
T Consensus 204 ~d~~g~T~Lh~A~----~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g-~~~l~~lLL~ 278 (743)
T TIGR00870 204 ADSLGNTLLHLLV----MENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEG-RIVLFRLKLA 278 (743)
T ss_pred HhhhhhHHHHHHH----hhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcC-CccHHHHHHH
Confidence 8888888888888 333 233556666555443 567888888886665544 4555555555
Q ss_pred h
Q 021192 178 H 178 (316)
Q Consensus 178 ~ 178 (316)
.
T Consensus 279 ~ 279 (743)
T TIGR00870 279 I 279 (743)
T ss_pred H
Confidence 3
No 64
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6.2e-21 Score=166.48 Aligned_cols=101 Identities=26% Similarity=0.385 Sum_probs=95.3
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
.+.++.|+.....++.+++..+..+.....+|. .+|++++++||||||||.||+++|.++.. ||+.+++
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv----~PprGvLlHGPPGCGKT~lA~AiAgel~v-------Pf~~isA 256 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV----RPPRGVLLHGPPGCGKTSLANAIAGELGV-------PFLSISA 256 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCC----CCCCceeeeCCCCccHHHHHHHHhhhcCC-------ceEeecc
Confidence 688899999999999998887888888888887 68899999999999999999999999999 9999999
Q ss_pred cccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 284 TDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.++|+.+.|+||+++|++|++|...+|||+||
T Consensus 257 peivSGvSGESEkkiRelF~~A~~~aPcivFi 288 (802)
T KOG0733|consen 257 PEIVSGVSGESEKKIRELFDQAKSNAPCIVFI 288 (802)
T ss_pred hhhhcccCcccHHHHHHHHHHHhccCCeEEEe
Confidence 99999999999999999999999999999998
No 65
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.83 E-value=3.3e-20 Score=176.83 Aligned_cols=147 Identities=27% Similarity=0.235 Sum_probs=92.8
Q ss_pred CCCChhhHH-HHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCC---CHHHHHHHHcCCCCCc------cccc
Q 021192 10 RSAKPATIH-GCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN---KAEIVKSLLEWPGNDK------VELE 79 (316)
Q Consensus 10 ~~~~~t~L~-~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~------~~~~ 79 (316)
+..|.|||| .|+..++.++++.|+. .+. .+.. |.||||.|+..+ ...++..++....+.+ ....
T Consensus 49 d~~G~t~Lh~~A~~~~~~eiv~lLl~-~g~----~~~~-G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~ 122 (743)
T TIGR00870 49 DRLGRSALFVAAIENENLELTELLLN-LSC----RGAV-GDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYT 122 (743)
T ss_pred CccchhHHHHHHHhcChHHHHHHHHh-CCC----CCCc-ChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccc
Confidence 455666666 5555555555554443 332 2222 666666666521 1122222222111000 0001
Q ss_pred cccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccc--------------cCCCcHHHHHhhhhhccCcHHHHHHHHhcC
Q 021192 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA--------------NNGMTPLHLSVWYSIRSEDYATVKTLLEYN 145 (316)
Q Consensus 80 ~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~--------------~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~g 145 (316)
..+..|.||||+|+.+|+.+++++|+++|++++.++ ..|.||||.|+ ..++.+++++|+++|
T Consensus 123 ~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa----~~~~~~iv~lLl~~g 198 (743)
T TIGR00870 123 SEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAA----CLGSPSIVALLSEDP 198 (743)
T ss_pred cccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHH----HhCCHHHHHHHhcCC
Confidence 122458888888888888888888888888888653 25788888888 778888888888888
Q ss_pred CCCCCCCCCCCCccccccCCC
Q 021192 146 ADCSAKDNEGKTPLDHLSNGP 166 (316)
Q Consensus 146 a~~~~~~~~g~tpl~~~a~~~ 166 (316)
+|++.+|..|+||||+|+..+
T Consensus 199 adin~~d~~g~T~Lh~A~~~~ 219 (743)
T TIGR00870 199 ADILTADSLGNTLLHLLVMEN 219 (743)
T ss_pred cchhhHhhhhhHHHHHHHhhh
Confidence 888888888888887766654
No 66
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.83 E-value=6.2e-20 Score=127.44 Aligned_cols=89 Identities=40% Similarity=0.538 Sum_probs=80.4
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcC
Q 021192 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG 96 (316)
Q Consensus 17 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~ 96 (316)
||+||+.|++++++.|+. .+.+++. |.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..+
T Consensus 1 L~~A~~~~~~~~~~~ll~-~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~ 70 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLE-KGADINL-----GNTALHYAAENGNLEIVKLLLE----NGADINSQDKNGNTALHYAAENG 70 (89)
T ss_dssp HHHHHHTTTHHHHHHHHH-TTSTTTS-----SSBHHHHHHHTTTHHHHHHHHH----TTTCTT-BSTTSSBHHHHHHHTT
T ss_pred CHHHHHcCCHHHHHHHHH-CcCCCCC-----CCCHHHHHHHcCCHHHHHHHHH----hcccccccCCCCCCHHHHHHHcC
Confidence 799999999999999996 5666655 7799999999999999999999 88999999999999999999999
Q ss_pred CHHHHHHHHhcCCCccccc
Q 021192 97 CNEAAKLLLAHGAFIEAKA 115 (316)
Q Consensus 97 ~~~~~~~Ll~~g~~~~~~~ 115 (316)
+.+++++|+++|++++.+|
T Consensus 71 ~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 71 NLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp HHHHHHHHHHTTT-TTSS-
T ss_pred CHHHHHHHHHcCCCCCCcC
Confidence 9999999999999999875
No 67
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.81 E-value=3.6e-20 Score=146.06 Aligned_cols=99 Identities=29% Similarity=0.431 Sum_probs=91.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..+++++|+++.|...+-+..++..+.+... ..|.+++||||||||||.+||++|++... |++-+.
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~-------WAPknVLFyGppGTGKTm~Akalane~kv-------p~l~vk 183 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGD-------WAPKNVLFYGPPGTGKTMMAKALANEAKV-------PLLLVK 183 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcc-------cCcceeEEECCCCccHHHHHHHHhcccCC-------ceEEec
Confidence 4578899999999999988888887776543 57889999999999999999999999999 999999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+.+++|.|+|+.+.+++++++.|++.+||||||
T Consensus 184 at~liGehVGdgar~Ihely~rA~~~aPcivFi 216 (368)
T COG1223 184 ATELIGEHVGDGARRIHELYERARKAAPCIVFI 216 (368)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEe
Confidence 999999999999999999999999999999997
No 68
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.81 E-value=1.4e-19 Score=160.71 Aligned_cols=166 Identities=27% Similarity=0.229 Sum_probs=139.7
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
++-+|.|+||.||..|+.++++.|+ ++...++..+.. |.+|||+|++.|+.++|++|+. .+..+|+.+..|.||
T Consensus 45 qd~~gfTalhha~Lng~~~is~lll-e~ea~ldl~d~k-g~~plhlaaw~g~~e~vkmll~----q~d~~na~~~e~~tp 118 (854)
T KOG0507|consen 45 QDYSGFTLLHHAVLNGQNQISKLLL-DYEALLDLCDTK-GILPLHLAAWNGNLEIVKMLLL----QTDILNAVNIENETP 118 (854)
T ss_pred cCccchhHHHHHHhcCchHHHHHHh-cchhhhhhhhcc-CcceEEehhhcCcchHHHHHHh----cccCCCcccccCcCc
Confidence 4568999999999999999999777 677778888865 9999999999999999999999 557789999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCC--------CCCCCCCCCCccc
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD--------CSAKDNEGKTPLD 160 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~--------~~~~~~~g~tpl~ 160 (316)
||.|+..||.+++.+|+.+|+|+-.+|+.+.|+|.+|+ +-|..++++.|++...+ -..++..+.+|+|
T Consensus 119 lhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~----qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plH 194 (854)
T KOG0507|consen 119 LHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLAS----RFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLH 194 (854)
T ss_pred cchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHH----HhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcc
Confidence 99999999999999999999999999999999999999 88889999988876322 2334556788996
Q ss_pred cccCCCChHHHHHHHHHhHHHHHHH
Q 021192 161 HLSNGPGSAKLRELLLWHSEEQRKR 185 (316)
Q Consensus 161 ~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (316)
.|+. +++.++.+.|+.+|.+.+..
T Consensus 195 laak-ngh~~~~~~ll~ag~din~~ 218 (854)
T KOG0507|consen 195 LAAK-NGHVECMQALLEAGFDINYT 218 (854)
T ss_pred hhhh-cchHHHHHHHHhcCCCcccc
Confidence 6555 55666777777777665544
No 69
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.81 E-value=3.4e-20 Score=164.59 Aligned_cols=227 Identities=24% Similarity=0.237 Sum_probs=170.7
Q ss_pred hhhHHHHHhcCCHHHHHHHHhhCC------------CcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccc
Q 021192 14 PATIHGCAQSGDLLAFQRLLRENP------------SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (316)
Q Consensus 14 ~t~L~~A~~~g~~~~v~~ll~~~~------------~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (316)
.+-|..||+.|+++.+..||...+ ..+|..|-. |.|+||.|+.+|+.+++++|++ ..+-+++.
T Consensus 4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~-gfTalhha~Lng~~~is~llle----~ea~ldl~ 78 (854)
T KOG0507|consen 4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYS-GFTLLHHAVLNGQNQISKLLLD----YEALLDLC 78 (854)
T ss_pred hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCcc-chhHHHHHHhcCchHHHHHHhc----chhhhhhh
Confidence 456789999999999999997532 456777765 9999999999999999999999 67778899
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCcccc
Q 021192 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161 (316)
Q Consensus 82 ~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 161 (316)
|..|.+|||+|++.|+.++++.|+.++..+|+.+.+|.||||.|+ +.++.+++.+|+++|+|+..+|..+.|+++.
T Consensus 79 d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaa----qhgh~dvv~~Ll~~~adp~i~nns~~t~ldl 154 (854)
T KOG0507|consen 79 DTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAA----QHGHLEVVFYLLKKNADPFIRNNSKETVLDL 154 (854)
T ss_pred hccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhh----hhcchHHHHHHHhcCCCccccCcccccHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999977
Q ss_pred ccCCCChHHHHHHHHHhHHHHHHHhhHHHhhhhhhhhHHHHHHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCC
Q 021192 162 LSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGAR 241 (316)
Q Consensus 162 ~a~~~~~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~ 241 (316)
|+..+ ...++.+|+.......... . .......+.....++-.-.. ...+.-+.....|..+...
T Consensus 155 A~qfg-r~~Vvq~ll~~~~~~~~~~--------~--~~~~~~~~~~~~plHlaakn-----gh~~~~~~ll~ag~din~~ 218 (854)
T KOG0507|consen 155 ASRFG-RAEVVQMLLQKKFPVQSSL--------R--VGDIKRPFPAIYPLHLAAKN-----GHVECMQALLEAGFDINYT 218 (854)
T ss_pred HHHhh-hhHHHHHHhhhccchhhcc--------c--CCCCCCCCCCcCCcchhhhc-----chHHHHHHHHhcCCCcccc
Confidence 66654 5566666654421111100 0 00112222222222221110 0112223334566777766
Q ss_pred CCCceeeecCCCCcHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGR 265 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~ 265 (316)
+-.+-.++-..-|||+++.|.+-.
T Consensus 219 t~~gtalheaalcgk~evvr~ll~ 242 (854)
T KOG0507|consen 219 TEDGTALHEAALCGKAEVVRFLLE 242 (854)
T ss_pred cccchhhhhHhhcCcchhhhHHHh
Confidence 777777888888999999886644
No 70
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5.7e-20 Score=162.27 Aligned_cols=103 Identities=25% Similarity=0.424 Sum_probs=94.0
Q ss_pred HHHHhhhhchHHHHHHHHHHHH-HHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeee
Q 021192 202 ENELSNIVGLHELKIQLRKWAK-GMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~ 280 (316)
...|+++.|++++|..+++.+. .+..+.....+|+ .+|++++||||||||||++||++|++... +|+.
T Consensus 430 ~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi----~ppkGVLlyGPPGC~KT~lAkalAne~~~-------nFls 498 (693)
T KOG0730|consen 430 NVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI----SPPKGVLLYGPPGCGKTLLAKALANEAGM-------NFLS 498 (693)
T ss_pred CCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC----CCCceEEEECCCCcchHHHHHHHhhhhcC-------Ceee
Confidence 3568999999999999998554 4666777777776 68999999999999999999999999999 9999
Q ss_pred ecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 281 VQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
|.+.+++++|+|+||+.+|++|++|++.+|||||+
T Consensus 499 vkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFf 533 (693)
T KOG0730|consen 499 VKGPELFSKYVGESERAIREVFRKARQVAPCIIFF 533 (693)
T ss_pred ccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEeh
Confidence 99999999999999999999999999999999996
No 71
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.1e-20 Score=166.04 Aligned_cols=103 Identities=23% Similarity=0.388 Sum_probs=86.6
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeee
Q 021192 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~ 281 (316)
.-.|+++.|++++|..+.+-+..-..-......|+ ....+++||||||||||.+|+|+|+++.- .|+.|
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssgl----rkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSV 736 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGL----RKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSV 736 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhhhccc----cccceeEEECCCCCchHHHHHHHHhhcee-------eEEee
Confidence 45689999999999999885442211112222233 35678999999999999999999999999 99999
Q ss_pred cccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 282 QRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.+.+++..|+||||+++|++|+.||..+|||||+
T Consensus 737 KGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFF 770 (953)
T KOG0736|consen 737 KGPELLNMYVGQSEENVREVFERARSAAPCVIFF 770 (953)
T ss_pred cCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEe
Confidence 9999999999999999999999999999999996
No 72
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.81 E-value=5e-20 Score=150.67 Aligned_cols=145 Identities=27% Similarity=0.333 Sum_probs=119.3
Q ss_pred CCHHHHHHHHhhCC--------CcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHc
Q 021192 24 GDLLAFQRLLRENP--------SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN 95 (316)
Q Consensus 24 g~~~~v~~ll~~~~--------~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~ 95 (316)
-+.+.|...|.... --+|..|.. |.|+||||+..+++++|+.||+. .-++++.+|+.|+||+++++..
T Consensus 237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsN-GNTALHYsVSHaNF~VV~~LLDS---gvC~VD~qNrAGYtpiMLaALA 312 (452)
T KOG0514|consen 237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSN-GNTALHYAVSHANFDVVSILLDS---GVCDVDQQNRAGYTPVMLAALA 312 (452)
T ss_pred CCHHHHHHHHHHHHhcChHHHHHHhhhhcCC-CCeeeeeeecccchHHHHHHhcc---CcccccccccccccHHHHHHHH
Confidence 45666666554322 236888876 99999999999999999999995 5589999999999999998864
Q ss_pred -----CCHHHHHHHHhcCCCcccc-ccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChH
Q 021192 96 -----GCNEAAKLLLAHGAFIEAK-ANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169 (316)
Q Consensus 96 -----~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~ 169 (316)
.+.++|.-|...| |+|++ ...|+|+|++|+ .+|+.++|+.||.+|||+|.+|.+|.|+| +.|+..++.
T Consensus 313 ~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAV----SHGr~d~vk~LLacgAdVNiQDdDGSTAL-MCA~EHGhk 386 (452)
T KOG0514|consen 313 KLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAV----SHGRVDMVKALLACGADVNIQDDDGSTAL-MCAAEHGHK 386 (452)
T ss_pred hhcchhhHHHHHHHHhcc-Ccchhhhhhcchhhhhhh----hcCcHHHHHHHHHccCCCccccCCccHHH-hhhhhhChH
Confidence 4567787777765 45654 357999999999 99999999999999999999999999999 666667788
Q ss_pred HHHHHHHHh
Q 021192 170 KLRELLLWH 178 (316)
Q Consensus 170 ~~~~lL~~~ 178 (316)
+++.+|+..
T Consensus 387 EivklLLA~ 395 (452)
T KOG0514|consen 387 EIVKLLLAV 395 (452)
T ss_pred HHHHHHhcc
Confidence 888888754
No 73
>PHA02792 ankyrin-like protein; Provisional
Probab=99.80 E-value=2.1e-19 Score=161.63 Aligned_cols=168 Identities=12% Similarity=0.033 Sum_probs=120.6
Q ss_pred CCcccccCCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHH-HHhCCCHHHHHHHHcCCCCCcccccc
Q 021192 2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHV-SAGYNKAEIVKSLLEWPGNDKVELEA 80 (316)
Q Consensus 2 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~-A~~~g~~~~v~~Ll~~~~~~~~~~~~ 80 (316)
++|+++--...+.||||.-.-+-+.-+-..++..-+...+..+-. |.+|+|+ |+..|++|+|++|+. +|+++|.
T Consensus 26 ~~g~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~-~~~~~~~~~s~n~~lElvk~LI~----~GAdvN~ 100 (631)
T PHA02792 26 ESGANPLYEYDGETPLKAYVTKKNNNIKNDVVILLLSSVDYKNIN-DFDIFEYLCSDNIDIELLKLLIS----KGLEINS 100 (631)
T ss_pred HcCCCcccccCCCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccC-CccHHHHHHHhcccHHHHHHHHH----cCCCccc
Confidence 566666666777788887754544222111221223344444433 7778887 556788888888888 7888888
Q ss_pred ccCCCChHHHHHHH-cCCHHHHHHHHhcCCCcc------------------------------------ccccCCCcHHH
Q 021192 81 QNMYGETPLHMAAK-NGCNEAAKLLLAHGAFIE------------------------------------AKANNGMTPLH 123 (316)
Q Consensus 81 ~~~~g~t~Lh~a~~-~~~~~~~~~Ll~~g~~~~------------------------------------~~~~~g~t~L~ 123 (316)
++..|+||+|+|+. .++.+++++|++.||+++ ..|..|.||||
T Consensus 101 ~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~ 180 (631)
T PHA02792 101 IKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLY 180 (631)
T ss_pred ccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHH
Confidence 88888888888865 588888888888887632 34456899999
Q ss_pred HHhhhhhccC-------cHHHHHHHHhcCCCCCCCCCCCCCccccccCCCC-hHHHHHHHHHh
Q 021192 124 LSVWYSIRSE-------DYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG-SAKLRELLLWH 178 (316)
Q Consensus 124 ~a~~~~~~~~-------~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~-~~~~~~lL~~~ 178 (316)
+|+ ..+ +.+++++|+.+|++++.+|..|.||||+++.... ..+++++|...
T Consensus 181 ~~i----~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~ 239 (631)
T PHA02792 181 YYI----ITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDS 239 (631)
T ss_pred HHH----hhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhc
Confidence 999 555 6999999999999999999999999977776552 45677777654
No 74
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=6.3e-20 Score=147.42 Aligned_cols=106 Identities=18% Similarity=0.253 Sum_probs=90.2
Q ss_pred hHHHHHHHhhhhchHHHHHHHHHHHH-HHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCC
Q 021192 198 MDELENELSNIVGLHELKIQLRKWAK-GMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 276 (316)
Q Consensus 198 ~~~~~~~l~~i~~~~~~k~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~ 276 (316)
.+.....|+++.|++..|+.+++.+- .+..++ .+.-...+.+++++||||||||+.||+++|++...
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPq-----lFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS------- 192 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQ-----LFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS------- 192 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchh-----hhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-------
Confidence 34445678999999999999998432 223322 33334457789999999999999999999999998
Q ss_pred CeeeecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 277 RVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 277 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.|+.|+.+|+|++|.|+|++.++++|+.|+++.|.||||
T Consensus 193 TFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFi 231 (439)
T KOG0739|consen 193 TFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFI 231 (439)
T ss_pred ceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEe
Confidence 999999999999999999999999999999999999998
No 75
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.80 E-value=2.3e-19 Score=161.12 Aligned_cols=160 Identities=29% Similarity=0.354 Sum_probs=137.6
Q ss_pred CCCChhhHHHHHh---cCCHHHHHHHHhhCCCcccCC---CCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccc--
Q 021192 10 RSAKPATIHGCAQ---SGDLLAFQRLLRENPSLLNER---NPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-- 81 (316)
Q Consensus 10 ~~~~~t~L~~A~~---~g~~~~v~~ll~~~~~~~~~~---~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-- 81 (316)
...|.|.||.|.. .++.++++.||.-.+.-+|.. +...|.||||.|+.+.+.++|++||+ .|+|++++
T Consensus 140 Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~----~gADV~aRa~ 215 (782)
T KOG3676|consen 140 GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLA----AGADVHARAC 215 (782)
T ss_pred cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHH----cCCchhhHhh
Confidence 4579999999997 466789999998776555543 34459999999999999999999999 66666543
Q ss_pred -------c--------------CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHH
Q 021192 82 -------N--------------MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 140 (316)
Q Consensus 82 -------~--------------~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~ 140 (316)
| ..|..||..|+.-++.+++++|+++|||++++|..|+|.||..+ .+...++..+
T Consensus 216 G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lV----i~~~~~My~~ 291 (782)
T KOG3676|consen 216 GAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLV----IHFVTEMYDL 291 (782)
T ss_pred ccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHH----HHHHHHHHHH
Confidence 1 24788999999999999999999999999999999999999999 6678899999
Q ss_pred HHhcCCC--CCCCCCCCCCccccccCCCChHHHHHHHHH
Q 021192 141 LLEYNAD--CSAKDNEGKTPLDHLSNGPGSAKLRELLLW 177 (316)
Q Consensus 141 Ll~~ga~--~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~ 177 (316)
++++|++ ...+|..|.|||..||..+..+.+.++|..
T Consensus 292 ~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 292 ALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred HHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence 9999999 999999999999888887777777777776
No 76
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.6e-19 Score=157.71 Aligned_cols=103 Identities=22% Similarity=0.393 Sum_probs=91.7
Q ss_pred HHHHhhhhchHHHHHHHHHHHH-HHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeee
Q 021192 202 ENELSNIVGLHELKIQLRKWAK-GMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~ 280 (316)
...|+++.++.++..++...+. .+..+...+.+|+ ..|.+++++||||||||.+|+++|++... +|+.
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi----~~PsGvLL~GPPGCGKTLlAKAVANEag~-------NFis 575 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGI----DAPSGVLLCGPPGCGKTLLAKAVANEAGA-------NFIS 575 (802)
T ss_pred CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCC----CCCCceEEeCCCCccHHHHHHHHhhhccC-------ceEe
Confidence 3568999999999999887433 4555666667776 57889999999999999999999999999 9999
Q ss_pred ecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 281 VQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
|.+.+++.+|+|+||.-+|++|..|+..+|||||+
T Consensus 576 VKGPELlNkYVGESErAVR~vFqRAR~saPCVIFF 610 (802)
T KOG0733|consen 576 VKGPELLNKYVGESERAVRQVFQRARASAPCVIFF 610 (802)
T ss_pred ecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEe
Confidence 99999999999999999999999999999999996
No 77
>PHA02792 ankyrin-like protein; Provisional
Probab=99.78 E-value=4.2e-18 Score=153.32 Aligned_cols=156 Identities=13% Similarity=0.058 Sum_probs=125.0
Q ss_pred hhhHHHHHhcC--CHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCC--ChHH
Q 021192 14 PATIHGCAQSG--DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG--ETPL 89 (316)
Q Consensus 14 ~t~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g--~t~L 89 (316)
+-.||.=...+ +.++++.|+ +.|.+.+. .. ...++|.|+..|+.++|++|++ .|++++.+|..| .|||
T Consensus 307 q~~l~~Yl~~~~v~ieiIK~LI-d~Ga~~~r-~~--~~n~~~~Aa~~gn~eIVelLIs----~GADIN~kD~~g~~~TpL 378 (631)
T PHA02792 307 QDLLSEYVSYHTVYINVIKCMI-DEGATLYR-FK--HINKYFQKFDNRDPKVVEYILK----NGNVVVEDDDNIINIMPL 378 (631)
T ss_pred HHHHHHHHhcCCccHHHHHHHH-HCCCcccc-CC--cchHHHHHHHcCCHHHHHHHHH----cCCchhhhcCCCCChhHH
Confidence 33455555555 678899888 45666542 21 5678999999999999999999 899999999875 6999
Q ss_pred HHHHHcCCH---HHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccC--
Q 021192 90 HMAAKNGCN---EAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN-- 164 (316)
Q Consensus 90 h~a~~~~~~---~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~-- 164 (316)
|+|+..... +++++|+++|+++|.+|..|.||||+|+ ..++.+++++|+++|++++.+|..|.|||++|+.
T Consensus 379 h~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa----~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~ 454 (631)
T PHA02792 379 FPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCI----ESHSVSLVEWLIDNGADINITTKYGSTCIGICVILA 454 (631)
T ss_pred HHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHH
Confidence 998876654 4588999999999999999999999999 8899999999999999999999999999987754
Q ss_pred CCCh-------HHHHHHHHHhHHH
Q 021192 165 GPGS-------AKLRELLLWHSEE 181 (316)
Q Consensus 165 ~~~~-------~~~~~lL~~~~~~ 181 (316)
.++. ..++++|++++..
T Consensus 455 ~~~~~~i~~~~~~il~lLLs~~p~ 478 (631)
T PHA02792 455 HACIPEIAELYIKILEIILSKLPT 478 (631)
T ss_pred hcccHHHHHHHHHHHHHHHhcCCC
Confidence 2332 3456666666533
No 78
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.77 E-value=2.2e-18 Score=113.32 Aligned_cols=104 Identities=26% Similarity=0.385 Sum_probs=91.5
Q ss_pred hhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHH
Q 021192 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK 94 (316)
Q Consensus 15 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~ 94 (316)
-.+.|+.++|.++.|+..+.+ +.++|..-. |++|||||+-+|+++++++|+. .|++++.+|++|-|||..|++
T Consensus 4 ~~~~W~vkNG~~DeVk~~v~~-g~nVn~~~g--gR~plhyAAD~GQl~ilefli~----iGA~i~~kDKygITPLLsAvw 76 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQSVNE-GLNVNEIYG--GRTPLHYAADYGQLSILEFLIS----IGANIQDKDKYGITPLLSAVW 76 (117)
T ss_pred hhHhhhhccCcHHHHHHHHHc-cccHHHHhC--CcccchHhhhcchHHHHHHHHH----hccccCCccccCCcHHHHHHH
Confidence 457899999999999988865 477777763 9999999999999999999999 899999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCccccccCCCcHHHHH
Q 021192 95 NGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 125 (316)
Q Consensus 95 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a 125 (316)
-||.++|++|++.|++-.....+|.+.+-.+
T Consensus 77 EGH~~cVklLL~~GAdrt~~~PdG~~~~eat 107 (117)
T KOG4214|consen 77 EGHRDCVKLLLQNGADRTIHAPDGTALIEAT 107 (117)
T ss_pred HhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence 9999999999999999888888887766544
No 79
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.77 E-value=1.1e-17 Score=123.65 Aligned_cols=121 Identities=39% Similarity=0.580 Sum_probs=72.5
Q ss_pred CCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHH
Q 021192 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (316)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh 90 (316)
..|.||||.|+..|+.+.+..|+. .+.+.+..+.. |.||||+|+..++.+++++|++ .+.+++..+..|.||+|
T Consensus 5 ~~g~t~l~~a~~~~~~~~i~~li~-~~~~~~~~~~~-g~~~l~~a~~~~~~~~~~~ll~----~~~~~~~~~~~~~~~l~ 78 (126)
T cd00204 5 EDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDND-GRTPLHLAAKNGHLEIVKLLLE----KGADVNARDKDGNTPLH 78 (126)
T ss_pred cCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCccCCC-CCcHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCCHHH
Confidence 445666666666666666665553 33333444443 6666666666666666666666 44455555566666666
Q ss_pred HHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHH
Q 021192 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 141 (316)
Q Consensus 91 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~L 141 (316)
+|+..++.+++++|++.+.+++..+..|.||+++|. ..++.+++++|
T Consensus 79 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~L 125 (126)
T cd00204 79 LAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAA----KNGHLEVVKLL 125 (126)
T ss_pred HHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH----hcCCHHHHHHh
Confidence 666666666666666666666666666666666666 55555665554
No 80
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=7.3e-19 Score=151.47 Aligned_cols=102 Identities=23% Similarity=0.341 Sum_probs=96.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..++++.|..+.|+++.+++.++..+.+...+|- .-|.++++.||||||||.|||++|.+... ||+-.+
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGG----KLPKGVLLvGPPGTGKTlLARAvAGEA~V-------PFF~~s 369 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGG----KLPKGVLLVGPPGTGKTLLARAVAGEAGV-------PFFYAS 369 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccC----cCCCceEEeCCCCCchhHHHHHhhcccCC-------CeEecc
Confidence 3478899999999999999999999999988887 56778999999999999999999999999 999999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
++++=+-|+|..++++|++|..|+..+||||||
T Consensus 370 GSEFdEm~VGvGArRVRdLF~aAk~~APcIIFI 402 (752)
T KOG0734|consen 370 GSEFDEMFVGVGARRVRDLFAAAKARAPCIIFI 402 (752)
T ss_pred ccchhhhhhcccHHHHHHHHHHHHhcCCeEEEE
Confidence 999999999999999999999999999999998
No 81
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.76 E-value=1e-17 Score=123.89 Aligned_cols=119 Identities=44% Similarity=0.685 Sum_probs=108.3
Q ss_pred CCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhh
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~ 127 (316)
|.||||+|+..++.+++++|++ .+.+.+.++..|.||||+|+..++.+++++|++.+++++..+..|.||+|+|+
T Consensus 7 g~t~l~~a~~~~~~~~i~~li~----~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~- 81 (126)
T cd00204 7 GRTPLHLAASNGHLEVVKLLLE----NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA- 81 (126)
T ss_pred CCCHHHHHHHcCcHHHHHHHHH----cCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH-
Confidence 9999999999999999999999 67777889999999999999999999999999999999999999999999999
Q ss_pred hhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHH
Q 021192 128 YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 175 (316)
Q Consensus 128 ~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL 175 (316)
..++.+++++|++.+.+++..+..|.||++.+... +...+.++|
T Consensus 82 ---~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~L 125 (126)
T cd00204 82 ---RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN-GHLEVVKLL 125 (126)
T ss_pred ---HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc-CCHHHHHHh
Confidence 88999999999999999999999999999766655 455555554
No 82
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.5e-18 Score=142.99 Aligned_cols=101 Identities=24% Similarity=0.271 Sum_probs=90.1
Q ss_pred HHHhhhhchHHHHHHHHHHHH-HHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeee
Q 021192 203 NELSNIVGLHELKIQLRKWAK-GMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~ 281 (316)
..|+++.++++.|+.+++.+. .+.+++..+... .+-.+++++||||||||.||+++|.++.. .|+.|
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir-----rPWkgvLm~GPPGTGKTlLAKAvATEc~t-------TFFNV 276 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR-----RPWKGVLMVGPPGTGKTLLAKAVATECGT-------TFFNV 276 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcc-----cccceeeeeCCCCCcHHHHHHHHHHhhcC-------eEEEe
Confidence 568999999999999999544 455665554432 46778999999999999999999999998 99999
Q ss_pred cccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 282 QRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+.+.+++||-|+||+.+|-+|+.|+--+|.+|||
T Consensus 277 SsstltSKwRGeSEKlvRlLFemARfyAPStIFi 310 (491)
T KOG0738|consen 277 SSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFI 310 (491)
T ss_pred chhhhhhhhccchHHHHHHHHHHHHHhCCceeeh
Confidence 9999999999999999999999999999999998
No 83
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.7e-18 Score=134.33 Aligned_cols=103 Identities=22% Similarity=0.350 Sum_probs=89.4
Q ss_pred HHHHhhhhchHHHHHHHHHHHHH-HHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeee
Q 021192 202 ENELSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~ 280 (316)
...+.++.|+.-.|+++++.+.. +......+..|+ .+|+++++|||||||||+|++++|+.... .|++
T Consensus 151 dvsy~diggld~qkqeireavelplt~~~ly~qigi----dpprgvllygppg~gktml~kava~~t~a-------~fir 219 (408)
T KOG0727|consen 151 DVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGI----DPPRGVLLYGPPGTGKTMLAKAVANHTTA-------AFIR 219 (408)
T ss_pred CccccccccchhhHHHHHHHHhccchHHHHHHHhCC----CCCcceEEeCCCCCcHHHHHHHHhhccch-------heee
Confidence 44567788888889999886552 333444455665 68999999999999999999999999888 9999
Q ss_pred ecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 281 VQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
|.+++++.+|.|+....+|.+|..|++++|.||||
T Consensus 220 vvgsefvqkylgegprmvrdvfrlakenapsiifi 254 (408)
T KOG0727|consen 220 VVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFI 254 (408)
T ss_pred eccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEe
Confidence 99999999999999999999999999999999998
No 84
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.4e-18 Score=154.67 Aligned_cols=102 Identities=25% Similarity=0.390 Sum_probs=98.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
-.+.++.|.+++++++.+++.++..+...+.+|. ..|++++++||||||||.||+|+|.+... ||+.++
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGA----KiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svS 376 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGA----KIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVS 376 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCC----cCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeec
Confidence 4678999999999999999999999999999998 57889999999999999999999999999 999999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+++++..|+|..++++|++|..|+.++||||||
T Consensus 377 GSEFvE~~~g~~asrvr~lf~~ar~~aP~iifi 409 (774)
T KOG0731|consen 377 GSEFVEMFVGVGASRVRDLFPLARKNAPSIIFI 409 (774)
T ss_pred hHHHHHHhcccchHHHHHHHHHhhccCCeEEEe
Confidence 999999999999999999999999999999998
No 85
>CHL00181 cbbX CbbX; Provisional
Probab=99.73 E-value=3e-17 Score=137.65 Aligned_cols=116 Identities=38% Similarity=0.664 Sum_probs=101.6
Q ss_pred hhhHHHHHHHh-hhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCC
Q 021192 196 AKMDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP 274 (316)
Q Consensus 196 ~~~~~~~~~l~-~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~ 274 (316)
..+.++...++ +++|+..+|++++++...+.+.+.+...|.... .+..+++|+||||||||++|+++++.+...|.++
T Consensus 12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~-~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~ 90 (287)
T CHL00181 12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSS-NPGLHMSFTGSPGTGKTTVALKMADILYKLGYIK 90 (287)
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 34566777776 699999999999999988888888888887653 3567899999999999999999999999999999
Q ss_pred CCCeeeecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 275 TDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 275 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.++++++++++++++|+|+++.+++++|+.|.++ ||||
T Consensus 91 ~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~gg---VLfI 128 (287)
T CHL00181 91 KGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGG---VLFI 128 (287)
T ss_pred CCceEEecHHHHHHHHhccchHHHHHHHHHccCC---EEEE
Confidence 9999999999999999999999999999999764 6664
No 86
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.73 E-value=3.6e-17 Score=136.42 Aligned_cols=110 Identities=46% Similarity=0.738 Sum_probs=99.0
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeee
Q 021192 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~ 281 (316)
..++++++|++.+|+.++++.........+...|..... .+.+++|+||||||||++|+++++.+...+.++.+.++++
T Consensus 2 ~~~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~-~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~ 80 (261)
T TIGR02881 2 ERELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSK-QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEV 80 (261)
T ss_pred hHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEe
Confidence 467889999999999999999988888888888887654 5678999999999999999999999999999999999999
Q ss_pred cccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 282 QRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
++++++++|+|+++.+++++|+.|.++ ||||
T Consensus 81 ~~~~l~~~~~g~~~~~~~~~~~~a~~~---VL~I 111 (261)
T TIGR02881 81 ERADLVGEYIGHTAQKTREVIKKALGG---VLFI 111 (261)
T ss_pred cHHHhhhhhccchHHHHHHHHHhccCC---EEEE
Confidence 999999999999999999999999754 6665
No 87
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.72 E-value=2.9e-17 Score=108.09 Aligned_cols=115 Identities=27% Similarity=0.370 Sum_probs=98.4
Q ss_pred CCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhh
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~ 127 (316)
|.--..|++.+|..+-|+..+. .|.++|..- .|++|||+|+-+|..+++++|+..|++++.+|++|-|||..|+
T Consensus 2 ~d~~~~W~vkNG~~DeVk~~v~----~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAv- 75 (117)
T KOG4214|consen 2 GDMSVAWNVKNGEIDEVKQSVN----EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAV- 75 (117)
T ss_pred cchhHhhhhccCcHHHHHHHHH----ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHH-
Confidence 3445789999999999999988 677777654 7999999999999999999999999999999999999999999
Q ss_pred hhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHH
Q 021192 128 YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 175 (316)
Q Consensus 128 ~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL 175 (316)
-.||.++|++|++.|||...+..+|.+.+ -++ ..+.+.++|
T Consensus 76 ---wEGH~~cVklLL~~GAdrt~~~PdG~~~~-eat---e~edIr~LL 116 (117)
T KOG4214|consen 76 ---WEGHRDCVKLLLQNGADRTIHAPDGTALI-EAT---EEEDIRELL 116 (117)
T ss_pred ---HHhhHHHHHHHHHcCcccceeCCCchhHH-hhc---cHHHHHHHh
Confidence 56899999999999999998888887776 332 345566655
No 88
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2e-17 Score=147.84 Aligned_cols=103 Identities=24% Similarity=0.427 Sum_probs=97.8
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeee
Q 021192 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~ 281 (316)
...+.+..|.++.++++.+++..+..+.+...+|. ..|.++++.||||||||.|||++|.+... ||+.+
T Consensus 146 ~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGa----kiPkGvlLvGpPGTGKTLLAkAvAgEA~V-------PFf~i 214 (596)
T COG0465 146 KVTFADVAGVDEAKEELSELVDFLKNPKKYQALGA----KIPKGVLLVGPPGTGKTLLAKAVAGEAGV-------PFFSI 214 (596)
T ss_pred CcChhhhcCcHHHHHHHHHHHHHHhCchhhHhccc----ccccceeEecCCCCCcHHHHHHHhcccCC-------Cceec
Confidence 45678899999999999999999999999988887 57789999999999999999999999999 99999
Q ss_pred cccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 282 QRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+++|.+.-|+|..++++|.+|++|+.++||||||
T Consensus 215 SGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFI 248 (596)
T COG0465 215 SGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFI 248 (596)
T ss_pred cchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEE
Confidence 9999999999999999999999999999999998
No 89
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.70 E-value=1.8e-16 Score=133.18 Aligned_cols=116 Identities=35% Similarity=0.638 Sum_probs=102.3
Q ss_pred hhhHHHHHHHh-hhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCC
Q 021192 196 AKMDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP 274 (316)
Q Consensus 196 ~~~~~~~~~l~-~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~ 274 (316)
..+.+....++ .++|+..+|+.+.++...+...+.+...|+... .+..+++|+||||||||++|+++++.++..|..+
T Consensus 11 ~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~-~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~ 89 (284)
T TIGR02880 11 SGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASA-APTLHMSFTGNPGTGKTTVALRMAQILHRLGYVR 89 (284)
T ss_pred ccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-CCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcc
Confidence 45667777777 699999999999999998888888888888653 3566899999999999999999999999999999
Q ss_pred CCCeeeecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 275 TDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 275 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.++++.++++++++.|+|+++.+++++|++|.+ .||||
T Consensus 90 ~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~---gvL~i 127 (284)
T TIGR02880 90 KGHLVSVTRDDLVGQYIGHTAPKTKEILKRAMG---GVLFI 127 (284)
T ss_pred cceEEEecHHHHhHhhcccchHHHHHHHHHccC---cEEEE
Confidence 999999999999999999999999999999966 46664
No 90
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.69 E-value=3.8e-16 Score=127.85 Aligned_cols=109 Identities=39% Similarity=0.552 Sum_probs=67.0
Q ss_pred CCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCC-----HHHHHHHHhcCC---CccccccCCC
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC-----NEAAKLLLAHGA---FIEAKANNGM 119 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~-----~~~~~~Ll~~g~---~~~~~~~~g~ 119 (316)
+.+++|.++..+..+++++++. .+.+++.+|..|.||||+|+..++ .+++++|++.|+ +.+..|..|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~ 148 (235)
T COG0666 73 GRLPLHSAASKGDDKIVKLLLA----SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN 148 (235)
T ss_pred ccCHHHHHHHcCcHHHHHHHHH----cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence 5566666666666666666666 555666666666666666666666 666666666666 3444466666
Q ss_pred cHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccC
Q 021192 120 TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (316)
Q Consensus 120 t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~ 164 (316)
||||+|+ ..++.+++++|++.|++++.++..|.|+++.++.
T Consensus 149 tpl~~A~----~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~ 189 (235)
T COG0666 149 TPLHWAA----LNGDADIVELLLEAGADPNSRNSYGVTALDPAAK 189 (235)
T ss_pred chhHHHH----HcCchHHHHHHHhcCCCCcccccCCCcchhhhcc
Confidence 6666666 5555666666666666666666666666644443
No 91
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.3e-17 Score=130.05 Aligned_cols=103 Identities=27% Similarity=0.409 Sum_probs=90.1
Q ss_pred HHHHhhhhchHHHHHHHHHHHH-HHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeee
Q 021192 202 ENELSNIVGLHELKIQLRKWAK-GMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~ 280 (316)
...+.++.|..+..+.+++.+. .+..+.+.-.+|+ .+|.++++|||||||||.+||++|+.... -|++
T Consensus 173 dvty~dvggckeqieklrevve~pll~perfv~lgi----dppkgvllygppgtgktl~aravanrtda-------cfir 241 (435)
T KOG0729|consen 173 DVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGI----DPPKGVLLYGPPGTGKTLCARAVANRTDA-------CFIR 241 (435)
T ss_pred CcccccccchHHHHHHHHHHHhccccCHHHHhhcCC----CCCCceEEeCCCCCchhHHHHHHhcccCc-------eEEe
Confidence 3456777777777777877665 3556666677777 68889999999999999999999999998 9999
Q ss_pred ecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 281 VQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
|-++++|.+|+|+.+..+|++|+.|+....||||+
T Consensus 242 vigselvqkyvgegarmvrelf~martkkaciiff 276 (435)
T KOG0729|consen 242 VIGSELVQKYVGEGARMVRELFEMARTKKACIIFF 276 (435)
T ss_pred ehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEe
Confidence 99999999999999999999999999999999996
No 92
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.6e-16 Score=144.71 Aligned_cols=103 Identities=28% Similarity=0.408 Sum_probs=88.0
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHH-HhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeee
Q 021192 202 ENELSNIVGLHELKIQLRKWAKGM-LLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~~l-~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~ 280 (316)
...+.++.++...++.+++.+... .........++ .++.+++|+||||||||++|+++|+++.. +|+.
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~----~~~~giLl~GpPGtGKT~lAkava~~~~~-------~fi~ 306 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGL----RPPKGVLLYGPPGTGKTLLAKAVALESRS-------RFIS 306 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCC----CCCCeeEEECCCCCCHHHHHHHHHhhCCC-------eEEE
Confidence 345678888999999999876643 33333333333 57779999999999999999999999999 9999
Q ss_pred ecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 281 VQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+..++++++|+|++++++|++|+.|+..+||||||
T Consensus 307 v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFi 341 (494)
T COG0464 307 VKGSELLSKWVGESEKNIRELFEKARKLAPSIIFI 341 (494)
T ss_pred eeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEE
Confidence 99999999999999999999999999999999997
No 93
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.66 E-value=2.8e-15 Score=122.66 Aligned_cols=127 Identities=30% Similarity=0.372 Sum_probs=116.5
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCC-----HHHHHHHHcCCCCCcc---cccc
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK-----AEIVKSLLEWPGNDKV---ELEA 80 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~-----~~~v~~Ll~~~~~~~~---~~~~ 80 (316)
.+..+.+++|.++..++...+..++ ..+.+++.++.. |.||||+|+..++ .+++++|++ .++ +.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~~~~~~ll~----~g~~~~~~~~ 142 (235)
T COG0666 69 RDLDGRLPLHSAASKGDDKIVKLLL-ASGADVNAKDAD-GDTPLHLAALNGNPPEGNIEVAKLLLE----AGADLDVNNL 142 (235)
T ss_pred CCccccCHHHHHHHcCcHHHHHHHH-HcCCCcccccCC-CCcHHHHHHhcCCcccchHHHHHHHHH----cCCCCCCccc
Confidence 3455899999999999999998777 567777888876 9999999999999 999999999 666 6677
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcC
Q 021192 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN 145 (316)
Q Consensus 81 ~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~g 145 (316)
+|..|+||||+|+..|+.+++++|++.|++++.++..|.|+++.|+ ..++.+++..+++.+
T Consensus 143 ~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~----~~~~~~~~~~l~~~~ 203 (235)
T COG0666 143 RDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAA----KNGRIELVKLLLDKG 203 (235)
T ss_pred cCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhc----ccchHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999999 899999999999987
No 94
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.3e-16 Score=124.18 Aligned_cols=101 Identities=23% Similarity=0.349 Sum_probs=86.2
Q ss_pred HHhhhhchHHHHHHHHHHHH-HHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 204 ELSNIVGLHELKIQLRKWAK-GMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
.++-+.++......+++.+. .+..+.....+|+ ..|.++++|||||||||.+||++|..... .|++|+
T Consensus 145 tYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGI----aQPKGvlLygppgtGktLlaraVahht~c-------~firvs 213 (404)
T KOG0728|consen 145 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI----AQPKGVLLYGPPGTGKTLLARAVAHHTDC-------TFIRVS 213 (404)
T ss_pred HHHHhccHHHHHHHHHHHHhccccCHHHHHhcCC----CCCcceEEecCCCCchhHHHHHHHhhcce-------EEEEec
Confidence 34455666666666666554 3456666777777 57889999999999999999999999999 999999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+++++.+|+|+.+..+|++|-.|++.+|.|||.
T Consensus 214 gselvqk~igegsrmvrelfvmarehapsiifm 246 (404)
T KOG0728|consen 214 GSELVQKYIGEGSRMVRELFVMAREHAPSIIFM 246 (404)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCceEee
Confidence 999999999999999999999999999999995
No 95
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.2e-16 Score=129.34 Aligned_cols=101 Identities=28% Similarity=0.446 Sum_probs=82.5
Q ss_pred HhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccc
Q 021192 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (316)
Q Consensus 205 l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~ 284 (316)
++.+.+......++++ .+.....+..+...+.-.+|..+++|||||+|||.+||+++..+.. +|+.++++
T Consensus 131 ~~~~ggl~~qirelre---~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~-------nfl~v~ss 200 (388)
T KOG0651|consen 131 FENVGGLFYQIRELRE---VIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGV-------NFLKVVSS 200 (388)
T ss_pred HHHhCChHHHHHHHHh---heEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCC-------ceEEeeHh
Confidence 4555555444444444 4444444444555555579999999999999999999999999998 99999999
Q ss_pred ccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 285 DLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 285 ~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.++++|+|++++.||+.|..|++..||||||
T Consensus 201 ~lv~kyiGEsaRlIRemf~yA~~~~pciifm 231 (388)
T KOG0651|consen 201 ALVDKYIGESARLIRDMFRYAREVIPCIIFM 231 (388)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhhCceEEee
Confidence 9999999999999999999999999999997
No 96
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.7e-16 Score=125.60 Aligned_cols=103 Identities=26% Similarity=0.368 Sum_probs=86.5
Q ss_pred HHHHhhhhchHHHHHHHHHH-HHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeee
Q 021192 202 ENELSNIVGLHELKIQLRKW-AKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~ 280 (316)
.+.++++.|++...+++.+. +-.+....+...+|+ .+|.++++|||||||||.+||++|..... .|+.
T Consensus 167 tE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi----~pPKGvLmYGPPGTGKTlmARAcAaqT~a-------TFLK 235 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI----RPPKGVLMYGPPGTGKTLMARACAAQTNA-------TFLK 235 (424)
T ss_pred cccccccccHHHHHHHHHHHhccccccHHHHHhcCC----CCCCceEeeCCCCCcHHHHHHHHHHhccc-------hHHH
Confidence 35567777777665555542 223445555666666 68899999999999999999999999998 9999
Q ss_pred ecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 281 VQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
..+..+|.-|+|+.++.+|..|..|++.+|+||||
T Consensus 236 LAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFI 270 (424)
T KOG0652|consen 236 LAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFI 270 (424)
T ss_pred hcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEE
Confidence 99999999999999999999999999999999998
No 97
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.65 E-value=2.6e-16 Score=132.02 Aligned_cols=69 Identities=19% Similarity=0.280 Sum_probs=65.6
Q ss_pred CCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhhc-----CCcEEEe
Q 021192 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLS-----EITCLTF 314 (316)
Q Consensus 240 ~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~-----~~~~~~f 314 (316)
..+|+.++++||||||||.+|+++++++.. +++.+++.+++++|+|++|+++|++|+.|.+ ++|||||
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~-------~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLF 217 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGI-------EPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLF 217 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-------CeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEE
Confidence 478999999999999999999999999998 9999999999999999999999999999975 6799999
Q ss_pred c
Q 021192 315 I 315 (316)
Q Consensus 315 ~ 315 (316)
|
T Consensus 218 I 218 (413)
T PLN00020 218 I 218 (413)
T ss_pred E
Confidence 8
No 98
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5.9e-17 Score=130.09 Aligned_cols=103 Identities=19% Similarity=0.362 Sum_probs=88.5
Q ss_pred HHHHhhhhchHHHHHHHHHHHH-HHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeee
Q 021192 202 ENELSNIVGLHELKIQLRKWAK-GMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~ 280 (316)
.+.+.++.|++...+++++-+. .+..+.....+|+ .+|.++++||+||||||.||+++|+.... .|++
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGi----kpPKGVIlyG~PGTGKTLLAKAVANqTSA-------TFlR 249 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGI----KPPKGVILYGEPGTGKTLLAKAVANQTSA-------TFLR 249 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC----CCCCeeEEeCCCCCchhHHHHHHhcccch-------hhhh
Confidence 4567778888887777777443 2344455555665 68899999999999999999999999999 9999
Q ss_pred ecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 281 VQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+.+++++.+|.|+..+.+|++|..|.+.+|.|+||
T Consensus 250 vvGseLiQkylGdGpklvRqlF~vA~e~apSIvFi 284 (440)
T KOG0726|consen 250 VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFI 284 (440)
T ss_pred hhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEe
Confidence 99999999999999999999999999999999998
No 99
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=4.7e-16 Score=133.15 Aligned_cols=120 Identities=25% Similarity=0.178 Sum_probs=77.4
Q ss_pred hHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHc
Q 021192 16 TIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN 95 (316)
Q Consensus 16 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~ 95 (316)
.|..|+..|.++.|+..+. .-.|+...++. |.|+||-|+..||.+||++|++ .|+++|..|.+||||||+|+.+
T Consensus 553 LLLDaaLeGEldlVq~~i~-ev~DpSqpNdE-GITaLHNAiCaghyeIVkFLi~----~ganVNa~DSdGWTPLHCAASC 626 (752)
T KOG0515|consen 553 LLLDAALEGELDLVQRIIY-EVTDPSQPNDE-GITALHNAICAGHYEIVKFLIE----FGANVNAADSDGWTPLHCAASC 626 (752)
T ss_pred HHHhhhhcchHHHHHHHHH-hhcCCCCCCcc-chhHHhhhhhcchhHHHHHHHh----cCCcccCccCCCCchhhhhhhc
Confidence 3445677777777776663 33455555554 7777777777777777777777 6677777777777777777777
Q ss_pred CCHHHHHHHHhcCCCcccc-ccCCCcHHHHHhhhhhccCcHHHHHHHHh
Q 021192 96 GCNEAAKLLLAHGAFIEAK-ANNGMTPLHLSVWYSIRSEDYATVKTLLE 143 (316)
Q Consensus 96 ~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~ 143 (316)
++..+|+.|++.|+.+-+. -.++.|+...+-.+ ..|..+|.++|-.
T Consensus 627 Nnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~--eeGY~~CsqyL~~ 673 (752)
T KOG0515|consen 627 NNVPMCKQLVESGAAVFASTLSDMETAAEKCEEM--EEGYDQCSQYLYG 673 (752)
T ss_pred CchHHHHHHHhccceEEeeecccccchhhhcchh--hhhHHHHHHHHHH
Confidence 7777777777777654433 34566666654433 4466666666653
No 100
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.64 E-value=8.3e-16 Score=138.51 Aligned_cols=124 Identities=27% Similarity=0.316 Sum_probs=113.7
Q ss_pred CChhhHHHHHhcCCHHHHHHHHhhCCCcccCCC----------------------CCCCCcHHHHHHhCCCHHHHHHHHc
Q 021192 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERN----------------------PVMAQTPLHVSAGYNKAEIVKSLLE 69 (316)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~----------------------~~~g~t~Lh~A~~~g~~~~v~~Ll~ 69 (316)
-|.|+||.|+.+-+.+.|+.|+ +.|+|++.+. -..|..||-+||..++.+|+++|++
T Consensus 183 ~GqSaLHiAIv~~~~~~V~lLl-~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~ 261 (782)
T KOG3676|consen 183 YGQSALHIAIVNRDAELVRLLL-AAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA 261 (782)
T ss_pred cCcchHHHHHHhccHHHHHHHH-HcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence 5899999999999999999888 5677776643 1237889999999999999999999
Q ss_pred CCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCC--ccccccCCCcHHHHHhhhhhccCcHHHHHHHHhc
Q 021192 70 WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF--IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144 (316)
Q Consensus 70 ~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ 144 (316)
.|+|++.+|.+|+|.||..+..-..++-.++++.|++ ...+|..|.|||-+|+ +.|..++.+.+++.
T Consensus 262 ----~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAa----klGk~emf~~ile~ 330 (782)
T KOG3676|consen 262 ----HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAA----KLGKKEMFQHILER 330 (782)
T ss_pred ----cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHH----HhhhHHHHHHHHHh
Confidence 8999999999999999999999889999999999999 8899999999999999 89999999999987
No 101
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.63 E-value=3.8e-16 Score=143.97 Aligned_cols=167 Identities=22% Similarity=0.284 Sum_probs=142.6
Q ss_pred cccCCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccc-cCC
Q 021192 6 DRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMY 84 (316)
Q Consensus 6 ~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~ 84 (316)
|+-..++-.|+|-.||..||-++|..|+ ..|.++..+|.. |.+||.+|+-.||..+|+.|++ ..++++.+ |+.
T Consensus 750 d~~Te~n~~t~LT~acaggh~e~vellv-~rganiehrdkk-gf~plImaatagh~tvV~~llk----~ha~veaQsdrt 823 (2131)
T KOG4369|consen 750 DPLTEPNIKTNLTSACAGGHREEVELLV-VRGANIEHRDKK-GFVPLIMAATAGHITVVQDLLK----AHADVEAQSDRT 823 (2131)
T ss_pred ccccCccccccccccccCccHHHHHHHH-Hhcccccccccc-cchhhhhhcccCchHHHHHHHh----hhhhhhhhcccc
Confidence 4445667889999999999999999777 678999999988 9999999999999999999999 67777765 588
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCC--CCCCCccccc
Q 021192 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD--NEGKTPLDHL 162 (316)
Q Consensus 85 g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~--~~g~tpl~~~ 162 (316)
+.|+|.+||..|+.++|++||..|++-..++....|||-+|. .-|..+++..|+.+|+.+|.+. +.|-.||. +
T Consensus 824 kdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~----Sggy~~iI~~llS~GseInSrtgSklgisPLm-l 898 (2131)
T KOG4369|consen 824 KDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLAR----SGGYTKIIHALLSSGSEINSRTGSKLGISPLM-L 898 (2131)
T ss_pred cCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhc----CcchHHHHHHHhhcccccccccccccCcchhh-h
Confidence 999999999999999999999999999999999999999999 8899999999999999988874 47889994 4
Q ss_pred cCCCChHHHHHHHHHhHHHHH
Q 021192 163 SNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 163 a~~~~~~~~~~lL~~~~~~~~ 183 (316)
+...++......|++.|.+.+
T Consensus 899 atmngh~~at~~ll~~gsdiN 919 (2131)
T KOG4369|consen 899 ATMNGHQAATLSLLQPGSDIN 919 (2131)
T ss_pred hhhccccHHHHHHhcccchhc
Confidence 444555556666666654433
No 102
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.3e-16 Score=129.38 Aligned_cols=108 Identities=24% Similarity=0.293 Sum_probs=89.9
Q ss_pred hHHHHHHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcC-CccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCC
Q 021192 198 MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALG-LKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 276 (316)
Q Consensus 198 ~~~~~~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~ 276 (316)
..++...+.++.+++.+++.+++.+-. +.++..+. .----.++.+++++||||||||.+|+++|++...
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~Vil---Plr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga------- 153 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVIL---PLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA------- 153 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhh---cccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC-------
Confidence 355667889999999999999885442 22222111 1111248899999999999999999999999999
Q ss_pred CeeeecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 277 RVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 277 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+|+.|+.+.+.++|.|++++.++.+|..|..-.||||||
T Consensus 154 ~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFI 192 (386)
T KOG0737|consen 154 NFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFI 192 (386)
T ss_pred CcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeeh
Confidence 999999999999999999999999999999999999998
No 103
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.4e-16 Score=138.11 Aligned_cols=102 Identities=23% Similarity=0.333 Sum_probs=89.0
Q ss_pred HHHhhhhchHHHHHHHHHHHH-HHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeee
Q 021192 203 NELSNIVGLHELKIQLRKWAK-GMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~ 281 (316)
..|+++.|+.++++.+.+.+. ...+++......+ +.+.++++|||||||||.+|-++|..+.. .|+.|
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~pl----r~~~giLLyGppGcGKT~la~a~a~~~~~-------~fisv 732 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPL----RLRTGILLYGPPGCGKTLLASAIASNSNL-------RFISV 732 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCc----ccccceEEECCCCCcHHHHHHHHHhhCCe-------eEEEe
Confidence 457889999999999998655 3455555554444 56678999999999999999999999998 99999
Q ss_pred cccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 282 QRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.+.++++||+|.||+++|.+|+.|....|||+|+
T Consensus 733 KGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFF 766 (952)
T KOG0735|consen 733 KGPELLSKYIGASEQNVRDLFERAQSAKPCILFF 766 (952)
T ss_pred cCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEe
Confidence 9999999999999999999999999999999995
No 104
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.62 E-value=5.2e-16 Score=96.90 Aligned_cols=50 Identities=48% Similarity=0.770 Sum_probs=25.1
Q ss_pred cccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHH
Q 021192 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 125 (316)
Q Consensus 76 ~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a 125 (316)
++++.+|..|.||||+|+..|+.+++++|+..|++++.+|.+|+||||+|
T Consensus 7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 66777777777777777777777777777777777777777777777765
No 105
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.61 E-value=2.8e-15 Score=133.72 Aligned_cols=100 Identities=24% Similarity=0.434 Sum_probs=85.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..++++.|++.+|+.+.+..... ......+|+ ..|.+++|+||||||||.+|+++|.++.. +++.++
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl----~~pkGILL~GPpGTGKTllAkaiA~e~~~-------~~~~l~ 291 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSF--SKQASNYGL----PTPRGLLLVGIQGTGKSLTAKAIANDWQL-------PLLRLD 291 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCC----CCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEE
Confidence 35788999999999887644322 223344554 47789999999999999999999999988 999999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.++++++|+|+++++++++|+.|...+||||||
T Consensus 292 ~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~I 324 (489)
T CHL00195 292 VGKLFGGIVGESESRMRQMIRIAEALSPCILWI 324 (489)
T ss_pred hHHhcccccChHHHHHHHHHHHHHhcCCcEEEe
Confidence 999999999999999999999999999999997
No 106
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.60 E-value=2.3e-15 Score=93.50 Aligned_cols=54 Identities=50% Similarity=0.667 Sum_probs=31.8
Q ss_pred CCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHH
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 105 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll 105 (316)
|.||||+|++.|+.+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~----~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLE----HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHH----TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 4566666666666666666666 56666666666666666666666666666664
No 107
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.60 E-value=5.1e-15 Score=138.49 Aligned_cols=106 Identities=29% Similarity=0.381 Sum_probs=97.4
Q ss_pred hhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHH
Q 021192 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK 94 (316)
Q Consensus 15 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~ 94 (316)
..|+.|+..|+.+.++.|+ +.+.++|.+|.. |.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.
T Consensus 84 ~~L~~aa~~G~~~~vk~LL-~~Gadin~~d~~-G~TpLh~Aa~~g~~eiv~~LL~----~Gadvn~~d~~G~TpLh~A~~ 157 (664)
T PTZ00322 84 VELCQLAASGDAVGARILL-TGGADPNCRDYD-GRTPLHIACANGHVQVVRVLLE----FGADPTLLDKDGKTPLELAEE 157 (664)
T ss_pred HHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCC-CCcHHHHHHHCCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHH
Confidence 4688999999999999888 578999999876 9999999999999999999999 789999999999999999999
Q ss_pred cCCHHHHHHHHhc-------CCCccccccCCCcHHHHHh
Q 021192 95 NGCNEAAKLLLAH-------GAFIEAKANNGMTPLHLSV 126 (316)
Q Consensus 95 ~~~~~~~~~Ll~~-------g~~~~~~~~~g~t~L~~a~ 126 (316)
.++.+++++|+++ |++++..+..|.+|+..+.
T Consensus 158 ~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 158 NGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS 196 (664)
T ss_pred CCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence 9999999999998 8888888888888877655
No 108
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.59 E-value=5.8e-15 Score=128.95 Aligned_cols=104 Identities=23% Similarity=0.347 Sum_probs=91.4
Q ss_pred HHHHHhhhhchHHHHHHHHHHHH-HHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCee
Q 021192 201 LENELSNIVGLHELKIQLRKWAK-GMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (316)
Q Consensus 201 ~~~~l~~i~~~~~~k~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~ 279 (316)
....+.++.|++..++.+++.+. .+..+.....+|+ .+|.+++|+||||||||++|+++|+.+.. +++
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl----~~pkgvLL~GppGTGKT~LAkalA~~l~~-------~fi 208 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI----DPPRGVLLYGPPGTGKTMLAKAVAHHTTA-------TFI 208 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC----CCCceEEEECCCCCCHHHHHHHHHHhcCC-------CEE
Confidence 34568899999999999999765 3455555666666 57889999999999999999999999877 899
Q ss_pred eecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 280 EVQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.+..++++.+|+|+++..++++|+.|+...|+||||
T Consensus 209 ~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfI 244 (398)
T PTZ00454 209 RVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFI 244 (398)
T ss_pred EEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEE
Confidence 999999999999999999999999999999999997
No 109
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.59 E-value=1.1e-14 Score=116.14 Aligned_cols=121 Identities=23% Similarity=0.224 Sum_probs=108.8
Q ss_pred CChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccc-cCCCChHHH
Q 021192 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGETPLH 90 (316)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~Lh 90 (316)
.-.++|..++-+|+.+....||. ...++|.+|.. |+|||..|+.+|+.+.|++||+ .|+|+|.. +..+.||||
T Consensus 11 ~~~~~Lle~i~Kndt~~a~~LLs-~vr~vn~~D~s-GMs~LahAaykGnl~~v~lll~----~gaDvN~~qhg~~YTpLm 84 (396)
T KOG1710|consen 11 APKSPLLEAIDKNDTEAALALLS-TVRQVNQRDPS-GMSVLAHAAYKGNLTLVELLLE----LGADVNDKQHGTLYTPLM 84 (396)
T ss_pred chhhHHHHHHccCcHHHHHHHHH-HhhhhhccCCC-cccHHHHHHhcCcHHHHHHHHH----hCCCcCcccccccccHHH
Confidence 34689999999999999999995 46679999987 9999999999999999999999 78888764 467899999
Q ss_pred HHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHH
Q 021192 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL 142 (316)
Q Consensus 91 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll 142 (316)
.|+..|+.+++++|++.|+.+...|.-|+|+-.+|+ --|+.++|..+-
T Consensus 85 FAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAA----FVG~H~CV~iIN 132 (396)
T KOG1710|consen 85 FAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAA----FVGHHECVAIIN 132 (396)
T ss_pred HHHHcCCchHHHHHHhccCccccccchhhhHHHHHH----HhcchHHHHHHh
Confidence 999999999999999999999999999999999999 678888876553
No 110
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.58 E-value=1.4e-15 Score=140.33 Aligned_cols=166 Identities=23% Similarity=0.231 Sum_probs=140.8
Q ss_pred CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHH
Q 021192 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (316)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L 89 (316)
.+.|-+||++|+..||-+.++.|| ..+.++|..-..+..|+|-+|+..|+.++|.+||. ..+++..+.+.|.|||
T Consensus 889 SklgisPLmlatmngh~~at~~ll-~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa----~~anvehRaktgltpl 963 (2131)
T KOG4369|consen 889 SKLGISPLMLATMNGHQAATLSLL-QPGSDINAQIETNRNTALTLALFQGRPEVVFLLLA----AQANVEHRAKTGLTPL 963 (2131)
T ss_pred cccCcchhhhhhhccccHHHHHHh-cccchhccccccccccceeeccccCcchHHHHHHH----HhhhhhhhcccCCccc
Confidence 456888999999999988888777 56778887776668889999999999999999998 6788888888899999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCccccc--cCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCC
Q 021192 90 HMAAKNGCNEAAKLLLAHGAFIEAKA--NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (316)
Q Consensus 90 h~a~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~ 167 (316)
+-++..|.+++-++||..|+|+|+.- ....|+|-+++ ..||...|+.|+...|-+.++|++|.|+| +.++.++
T Consensus 964 me~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a----~kGh~kfv~~lln~~atv~v~NkkG~T~L-wla~~Gg 1038 (2131)
T KOG4369|consen 964 MEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPA----NKGHTKFVPKLLNGDATVRVPNKKGCTVL-WLASAGG 1038 (2131)
T ss_pred chhhcCCccccchhhhhcccccccCCCCCcCCccceeec----CCCchhhhHHhhCCccceecccCCCCccc-chhccCC
Confidence 99999999999999999999888542 34568888888 88999999999999999999999999999 8888889
Q ss_pred hHHHHHHHHHhHHHHHHH
Q 021192 168 SAKLRELLLWHSEEQRKR 185 (316)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~ 185 (316)
....+.+|.+++++....
T Consensus 1039 ~lss~~il~~~~ad~d~q 1056 (2131)
T KOG4369|consen 1039 ALSSCPILVSSVADADQQ 1056 (2131)
T ss_pred ccccchHHhhcccChhhh
Confidence 999999999887664433
No 111
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.58 E-value=5.7e-15 Score=140.09 Aligned_cols=102 Identities=25% Similarity=0.400 Sum_probs=89.5
Q ss_pred HHHhhhhchHHHHHHHHHHHH-HHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeee
Q 021192 203 NELSNIVGLHELKIQLRKWAK-GMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~ 281 (316)
..++++.+++.+++.+.+.+. .+........++. ..+.+++|+||||||||++|+++|+++.. +|+.+
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~----~~~~giLL~GppGtGKT~lakalA~e~~~-------~fi~v 518 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI----RPPKGVLLFGPPGTGKTLLAKAVATESGA-------NFIAV 518 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC----CCCceEEEECCCCCCHHHHHHHHHHhcCC-------CEEEE
Confidence 357888999999999988665 3455555555554 56788999999999999999999999987 99999
Q ss_pred cccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 282 QRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
..++++++|+|++++.++++|+.|+...||||||
T Consensus 519 ~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifi 552 (733)
T TIGR01243 519 RGPEILSKWVGESEKAIREIFRKARQAAPAIIFF 552 (733)
T ss_pred ehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 9999999999999999999999999999999997
No 112
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=5.4e-15 Score=126.75 Aligned_cols=117 Identities=25% Similarity=0.304 Sum_probs=99.7
Q ss_pred HHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhc
Q 021192 52 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIR 131 (316)
Q Consensus 52 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~ 131 (316)
|.-|+..|.+++|+..+. .-.|+...|..|-|+||-|+..||.++|++|+++|++||+.|.+||||||+|+ .
T Consensus 554 LLDaaLeGEldlVq~~i~----ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAA----S 625 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIY----EVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAA----S 625 (752)
T ss_pred HHhhhhcchHHHHHHHHH----hhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhh----h
Confidence 456889999999999998 66788888999999999999999999999999999999999999999999999 9
Q ss_pred cCcHHHHHHHHhcCCCCCCCC-CCCCCcccccc-CCCChHHHHHHHH
Q 021192 132 SEDYATVKTLLEYNADCSAKD-NEGKTPLDHLS-NGPGSAKLRELLL 176 (316)
Q Consensus 132 ~~~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~~a-~~~~~~~~~~lL~ 176 (316)
+++..+++.|++.|+-+.... .++.|+.+-+- ...+...+..+|.
T Consensus 626 CNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~ 672 (752)
T KOG0515|consen 626 CNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY 672 (752)
T ss_pred cCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence 999999999999998876654 46778874332 2335566666664
No 113
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.58 E-value=6.9e-15 Score=133.54 Aligned_cols=103 Identities=23% Similarity=0.398 Sum_probs=91.9
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeee
Q 021192 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~ 281 (316)
...++++.+.+.+++.+++++..+.........+. ..+.+++++||||||||++|+++|.+... +++.+
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~----~~~~giLL~GppGtGKT~la~alA~~~~~-------~~~~i 119 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGA----KIPKGVLLVGPPGTGKTLLAKAVAGEAGV-------PFFSI 119 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCC----CCCCcEEEECCCCCCHHHHHHHHHHHcCC-------Ceeec
Confidence 34678899999999999998887766666666654 56788999999999999999999999877 99999
Q ss_pred cccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 282 QRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+.+++.+.|+|.++++++++|+.|+..+||||||
T Consensus 120 ~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~i 153 (495)
T TIGR01241 120 SGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFI 153 (495)
T ss_pred cHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999999999999999997
No 114
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.57 E-value=2e-15 Score=94.27 Aligned_cols=56 Identities=38% Similarity=0.643 Sum_probs=33.3
Q ss_pred HHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHH
Q 021192 32 LLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (316)
Q Consensus 32 ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a 92 (316)
||+.++.+++.+|.. |.||||+||..|+.+++++|++ .+++++.+|..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~-G~T~LH~A~~~g~~~~v~~Ll~----~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKY-GNTPLHWAARYGHSEVVRLLLQ----NGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TT-S--HHHHHHHHT-HHHHHHHHH----CT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCC-CCcHHHHHHHcCcHHHHHHHHH----CcCCCCCCcCCCCCHHHhC
Confidence 455556899999987 9999999999999999999998 8999999999999999987
No 115
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.57 E-value=1.2e-14 Score=127.75 Aligned_cols=102 Identities=20% Similarity=0.344 Sum_probs=88.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHH-HHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeee
Q 021192 203 NELSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~ 281 (316)
..+.++.|++..++.+++.+.. +..+.....+++ .++.+++|+||||||||++|+++|+.+.. +++.+
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi----~~p~gVLL~GPPGTGKT~LAraIA~el~~-------~fi~V 248 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGI----KPPKGVILYGPPGTGKTLLAKAVANETSA-------TFLRV 248 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCC----CCCcEEEEECCCCCCHHHHHHHHHHhhCC-------CEEEE
Confidence 5678889999999999887653 444444555665 57789999999999999999999999877 89999
Q ss_pred cccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 282 QRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.+++++++|+|+++..++++|+.|+.+.|+||||
T Consensus 249 ~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfI 282 (438)
T PTZ00361 249 VGSELIQKYLGDGPKLVRELFRVAEENAPSIVFI 282 (438)
T ss_pred ecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeH
Confidence 9999999999999999999999999999999997
No 116
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.56 E-value=7.7e-15 Score=91.15 Aligned_cols=54 Identities=50% Similarity=0.732 Sum_probs=46.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHH
Q 021192 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL 142 (316)
Q Consensus 85 g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll 142 (316)
|+||||+|+..|+.+++++|++.|++++.+|.+|.||||+|+ ..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~----~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAA----KNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHH----HTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HccCHHHHHHHC
Confidence 789999999999999999999999999999999999999999 899999999986
No 117
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.56 E-value=1.8e-14 Score=126.50 Aligned_cols=102 Identities=24% Similarity=0.345 Sum_probs=88.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHH-HHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeee
Q 021192 203 NELSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~ 281 (316)
..++++.|+++.++.+++.+.. +........+|. .+|.+++++||||||||++|+++++.+.. +++.+
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~----~~p~gvLL~GppGtGKT~lAkaia~~~~~-------~~i~v 196 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGI----EPPKGVLLYGPPGTGKTLLAKAVAHETNA-------TFIRV 196 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCC----CCCCceEEECCCCCChHHHHHHHHHHhCC-------CEEEe
Confidence 4567889999999999886653 444455556665 57789999999999999999999999887 89999
Q ss_pred cccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 282 QRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
..+++.++|+|+++..++++|+.|....|+||||
T Consensus 197 ~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Ilfi 230 (389)
T PRK03992 197 VGSELVQKFIGEGARLVRELFELAREKAPSIIFI 230 (389)
T ss_pred ehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEE
Confidence 9999999999999999999999999999999997
No 118
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.54 E-value=2.4e-14 Score=114.11 Aligned_cols=120 Identities=21% Similarity=0.208 Sum_probs=105.8
Q ss_pred CCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccc-cccCCCcHHHHHh
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA-KANNGMTPLHLSV 126 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~a~ 126 (316)
-..||..+..+|..+-...||. ....+|.+|..|.|||..|+..|+.++|++|++.|+|+|. .+..+.||||+|+
T Consensus 12 ~~~~Lle~i~Kndt~~a~~LLs----~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAA 87 (396)
T KOG1710|consen 12 PKSPLLEAIDKNDTEAALALLS----TVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAA 87 (396)
T ss_pred hhhHHHHHHccCcHHHHHHHHH----HhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHH
Confidence 4689999999999999999998 5556999999999999999999999999999999999984 4667899999999
Q ss_pred hhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHH
Q 021192 127 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 176 (316)
Q Consensus 127 ~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~ 176 (316)
..|+.+++++|++.|+.+...|.-|+|+-.+||.-+++. ++.++.
T Consensus 88 ----LSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~-CV~iIN 132 (396)
T KOG1710|consen 88 ----LSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHE-CVAIIN 132 (396)
T ss_pred ----HcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchH-HHHHHh
Confidence 889999999999999999999999999997777655544 444443
No 119
>CHL00176 ftsH cell division protein; Validated
Probab=99.52 E-value=4.9e-14 Score=129.78 Aligned_cols=102 Identities=25% Similarity=0.413 Sum_probs=91.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..++++.|.++.++.+.+++..+........++. ..+.+++|+||||||||++|+++|.+... +++.++
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~----~~p~gVLL~GPpGTGKT~LAralA~e~~~-------p~i~is 248 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGA----KIPKGVLLVGPPGTGKTLLAKAIAGEAEV-------PFFSIS 248 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccC----CCCceEEEECCCCCCHHHHHHHHHHHhCC-------Ceeecc
Confidence 4678899999999999999888777666666664 56788999999999999999999999877 999999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.+++...|+|.++++++++|+.|+.++||||||
T Consensus 249 ~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfI 281 (638)
T CHL00176 249 GSEFVEMFVGVGAARVRDLFKKAKENSPCIVFI 281 (638)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEE
Confidence 999999999999999999999999999999997
No 120
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.6e-14 Score=124.19 Aligned_cols=102 Identities=25% Similarity=0.318 Sum_probs=85.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..++++.|++.++..+.+++-.... +.-..+++ ..++.+++++||||+|||.|++++|.+... .|+.++
T Consensus 150 v~~~di~gl~~~k~~l~e~vi~p~l-r~d~F~gl---r~p~rglLLfGPpgtGKtmL~~aiAsE~~a-------tff~iS 218 (428)
T KOG0740|consen 150 VGWDDIAGLEDAKQSLKEAVILPLL-RPDLFLGL---REPVRGLLLFGPPGTGKTMLAKAIATESGA-------TFFNIS 218 (428)
T ss_pred ccccCCcchhhHHHHhhhhhhhccc-chHhhhcc---ccccchhheecCCCCchHHHHHHHHhhhcc-------eEeecc
Confidence 4578889999999998885443211 01112222 357789999999999999999999999999 999999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
++++.++|+|++++.+|.+|..|+...|.||||
T Consensus 219 assLtsK~~Ge~eK~vralf~vAr~~qPsvifi 251 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVARSLQPSVIFI 251 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHHHhcCCeEEEe
Confidence 999999999999999999999999999999997
No 121
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.49 E-value=7e-14 Score=124.72 Aligned_cols=110 Identities=21% Similarity=0.294 Sum_probs=86.8
Q ss_pred HHHHhhhhchHHHHHHHHHHHHH-HHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCC---CCCC
Q 021192 202 ENELSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDR 277 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~---~~~~ 277 (316)
...++++.|+...++.+++.+.. +........+++ .+|.+++|+||||||||++++++++.+...... ....
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl----~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDL----KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccC----CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 34578889999999998886542 344445556665 467899999999999999999999998652111 1234
Q ss_pred eeeecccccccccccCchHHHHHHHHHhhc----CCcEEEec
Q 021192 278 VTEVQRTDLVGEFVGHTGPKTRRRVGHLLS----EITCLTFI 315 (316)
Q Consensus 278 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~----~~~~~~f~ 315 (316)
|+.+..++++++|+|++++.++.+|+.|+. +.||||||
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfI 295 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFF 295 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 778888999999999999999999999976 47999996
No 122
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.43 E-value=5.2e-13 Score=116.87 Aligned_cols=102 Identities=23% Similarity=0.343 Sum_probs=86.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHH-HHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeee
Q 021192 203 NELSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~ 281 (316)
..++++.+++..++.+++.+.. +..+......|. .+|.+++++||||||||++|+++++.+.. +++.+
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~----~~p~gvLL~GppGtGKT~lakaia~~l~~-------~~~~v 187 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGI----EPPKGVLLYGPPGTGKTLLAKAVAHETNA-------TFIRV 187 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCC----CCCceEEEECCCCCCHHHHHHHHHHhCCC-------CEEec
Confidence 3567889999999999886653 344444445554 57788999999999999999999999887 89999
Q ss_pred cccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 282 QRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
..+++..+|+|+++..++++|+.|....|+||||
T Consensus 188 ~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~i 221 (364)
T TIGR01242 188 VGSELVRKYIGEGARLVREIFELAKEKAPSIIFI 221 (364)
T ss_pred chHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEh
Confidence 9999999999999999999999999999999996
No 123
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.38 E-value=1.6e-12 Score=123.58 Aligned_cols=102 Identities=23% Similarity=0.366 Sum_probs=88.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHH-HHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeee
Q 021192 203 NELSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~ 281 (316)
..++++.|+...++.+++++.. +..+.....+++ .++.+++|+||||||||++++++++++.. +++.+
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi----~~~~giLL~GppGtGKT~laraia~~~~~-------~~i~i 243 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI----EPPKGVLLYGPPGTGKTLLAKAVANEAGA-------YFISI 243 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC----CCCceEEEECCCCCChHHHHHHHHHHhCC-------eEEEE
Confidence 4678899999999999887653 344455555555 56788999999999999999999999877 89999
Q ss_pred cccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 282 QRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+.++++++|.|+++++++++|+.|....|+||||
T Consensus 244 ~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~i 277 (733)
T TIGR01243 244 NGPEIMSKYYGESEERLREIFKEAEENAPSIIFI 277 (733)
T ss_pred ecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEe
Confidence 9999999999999999999999999999999997
No 124
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.36 E-value=4.7e-13 Score=131.53 Aligned_cols=71 Identities=13% Similarity=0.216 Sum_probs=61.6
Q ss_pred cCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccccccc----------cc---------------
Q 021192 238 VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF----------VG--------------- 292 (316)
Q Consensus 238 ~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~----------~g--------------- 292 (316)
....+|++++++||||||||.||+++|.+.+. |++.++++++++++ +|
T Consensus 1625 LGl~pPKGILLiGPPGTGKTlLAKALA~es~V-------PFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1625 LALSPSRGILVIGSIGTGRSYLVKYLATNSYV-------PFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred cCCCCCCceEEECCCCCCHHHHHHHHHHhcCC-------ceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 33468999999999999999999999999999 99999999999765 22
Q ss_pred ----------------Cc--hHHHHHHHHHhhcCCcEEEec
Q 021192 293 ----------------HT--GPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 293 ----------------~~--~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.+ +.++|.+|+.|+..+||||||
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFI 1738 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWI 1738 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEE
Confidence 22 345899999999999999998
No 125
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.1e-12 Score=113.92 Aligned_cols=99 Identities=26% Similarity=0.390 Sum_probs=78.3
Q ss_pred hhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccc
Q 021192 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (316)
Q Consensus 207 ~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~ 286 (316)
.+.+.......++++ +.+..+...........+|+++++|||||+|||.+++++|++... .++.+++.++
T Consensus 185 ~~gg~~~~~~~i~e~---v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a-------~~~~i~~pel 254 (693)
T KOG0730|consen 185 DIGGLKRQLSVIREL---VELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA-------FLFLINGPEL 254 (693)
T ss_pred ccchhHHHHHHHHHH---HHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc-------eeEecccHHH
Confidence 334444444444443 333333333333344478899999999999999999999999998 9999999999
Q ss_pred ccccccCchHHHHHHHHHhhcCC-cEEEec
Q 021192 287 VGEFVGHTGPKTRRRVGHLLSEI-TCLTFI 315 (316)
Q Consensus 287 ~~~~~g~~~~~~~~~~~~a~~~~-~~~~f~ 315 (316)
+++|.|++++++|+.|++|.... |.+|||
T Consensus 255 i~k~~gEte~~LR~~f~~a~k~~~psii~I 284 (693)
T KOG0730|consen 255 ISKFPGETESNLRKAFAEALKFQVPSIIFI 284 (693)
T ss_pred HHhcccchHHHHHHHHHHHhccCCCeeEeH
Confidence 99999999999999999999999 999997
No 126
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.32 E-value=2.6e-12 Score=95.94 Aligned_cols=63 Identities=30% Similarity=0.549 Sum_probs=59.8
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhhcCC-cEEEec
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSEI-TCLTFI 315 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~-~~~~f~ 315 (316)
++++||||+|||++++.+++.+.. ++++++..++.+.+.+++++.++++|++|.... |+||||
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-------~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~i 64 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-------PFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFI 64 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-------EEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-------ccccccccccccccccccccccccccccccccccceeeee
Confidence 578999999999999999999987 899999999999999999999999999999888 999997
No 127
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=4.8e-12 Score=119.08 Aligned_cols=108 Identities=21% Similarity=0.272 Sum_probs=91.6
Q ss_pred HHHHhhhhchHHHHHHHHHHHH-HHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeee
Q 021192 202 ENELSNIVGLHELKIQLRKWAK-GMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~ 280 (316)
...++++.|+..+...+++++. .+.+++....+++ .+|++++|+||||||||..||++|..+.... .+..|+.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~i----tpPrgvL~~GppGTGkTl~araLa~~~s~~~--~kisffm 334 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNI----TPPRGVLFHGPPGTGKTLMARALAAACSRGN--RKISFFM 334 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhccc----CCCcceeecCCCCCchhHHHHhhhhhhcccc--cccchhh
Confidence 3568999999999999999765 4567776667666 6889999999999999999999999887521 2235666
Q ss_pred ecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 281 VQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
-.++|..++|+|+.+..+|-+|++|+...|.|||.
T Consensus 335 rkgaD~lskwvgEaERqlrllFeeA~k~qPSIIff 369 (1080)
T KOG0732|consen 335 RKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFF 369 (1080)
T ss_pred hcCchhhccccCcHHHHHHHHHHHHhccCceEEec
Confidence 67799999999999999999999999999999995
No 128
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.31 E-value=9.8e-12 Score=115.86 Aligned_cols=104 Identities=23% Similarity=0.414 Sum_probs=87.6
Q ss_pred HHHHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeee
Q 021192 201 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (316)
Q Consensus 201 ~~~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~ 280 (316)
....+.++.+....++.+.++.............+. ..+.+++++||||+|||+++++++.++.. +++.
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~----~~~~gill~G~~G~GKt~~~~~~a~~~~~-------~f~~ 215 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGG----KIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------PFFT 215 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCC----CCCCcEEEECCCCCCHHHHHHHHHHHcCC-------CEEE
Confidence 345567778888888888887776554444444433 45678999999999999999999999887 9999
Q ss_pred ecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 281 VQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
++.+++.+.|+|.++++++++|+.|+...||||||
T Consensus 216 is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifI 250 (644)
T PRK10733 216 ISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFI 250 (644)
T ss_pred EehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEe
Confidence 99999999999999999999999999999999997
No 129
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=4.9e-11 Score=97.74 Aligned_cols=115 Identities=19% Similarity=0.312 Sum_probs=83.2
Q ss_pred hHHHHHHHhhhhchHHHHHHHHHHHHH-HHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHh--hcCCCC
Q 021192 198 MDELENELSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLY--MVGILP 274 (316)
Q Consensus 198 ~~~~~~~l~~i~~~~~~k~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~--~~g~~~ 274 (316)
..+..-.|+.++=-.++|+.+..+... +...+.+....+ -...+-++++||||||||+|.+++|+.+. ..+-..
T Consensus 134 a~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnl---It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~ 210 (423)
T KOG0744|consen 134 AAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNL---ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYY 210 (423)
T ss_pred chhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCce---eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccc
Confidence 344555667777677788888776553 333333222111 12344578899999999999999999986 367778
Q ss_pred CCCeeeecccccccccccCchHHHHHHHHHhhc---CCcEEEec
Q 021192 275 TDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLS---EITCLTFI 315 (316)
Q Consensus 275 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~---~~~~~~f~ 315 (316)
++.++|++...+++||+++|.+.+.++|++.-+ -.-+++|+
T Consensus 211 ~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfv 254 (423)
T KOG0744|consen 211 KGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFV 254 (423)
T ss_pred cceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 889999999999999999999999999988733 23445553
No 130
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.6e-11 Score=103.90 Aligned_cols=65 Identities=26% Similarity=0.537 Sum_probs=56.2
Q ss_pred HHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhh
Q 021192 232 KALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLL 306 (316)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~ 306 (316)
..+|+ .+-.++++|||||||||.+||.|.+.+..- .---|++.+++.||+|+||.++|.+|..|.
T Consensus 249 e~lGi----~HVKGiLLyGPPGTGKTLiARqIGkMLNAr------ePKIVNGPeIL~KYVGeSE~NvR~LFaDAE 313 (744)
T KOG0741|consen 249 EQLGI----KHVKGILLYGPPGTGKTLIARQIGKMLNAR------EPKIVNGPEILNKYVGESEENVRKLFADAE 313 (744)
T ss_pred HHcCc----cceeeEEEECCCCCChhHHHHHHHHHhcCC------CCcccCcHHHHHHhhcccHHHHHHHHHhHH
Confidence 35555 567789999999999999999999998862 345678999999999999999999999994
No 131
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.15 E-value=3.3e-11 Score=109.06 Aligned_cols=94 Identities=27% Similarity=0.414 Sum_probs=84.8
Q ss_pred HHHHHHhhCC-CcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccccccc-CCCChHHHHHHHcCCHHHHHHHH
Q 021192 28 AFQRLLRENP-SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLLL 105 (316)
Q Consensus 28 ~v~~ll~~~~-~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~t~Lh~a~~~~~~~~~~~Ll 105 (316)
.++-++.+.+ .-.|..|.. |+|+||+|+..|..+++++||+ +|++++.+| ..|+||||-|...|+.+++-+|+
T Consensus 32 qlk~F~~k~c~n~anikD~~-GR~alH~~~S~~k~~~l~wLlq----hGidv~vqD~ESG~taLHRaiyyG~idca~lLL 106 (1267)
T KOG0783|consen 32 QLKGFSEKSCQNLANIKDRY-GRTALHIAVSENKNSFLRWLLQ----HGIDVFVQDEESGYTALHRAIYYGNIDCASLLL 106 (1267)
T ss_pred HHHHHHHHhhhhhhhHHHhh-ccceeeeeeccchhHHHHHHHh----cCceeeeccccccchHhhHhhhhchHHHHHHHH
Confidence 4555665543 447888877 9999999999999999999999 899999999 57999999999999999999999
Q ss_pred hcCCCccccccCCCcHHHHHh
Q 021192 106 AHGAFIEAKANNGMTPLHLSV 126 (316)
Q Consensus 106 ~~g~~~~~~~~~g~t~L~~a~ 126 (316)
++|+.+.+.|++|..||..-+
T Consensus 107 ~~g~SL~i~Dkeglsplq~~~ 127 (1267)
T KOG0783|consen 107 SKGRSLRIKDKEGLSPLQFLS 127 (1267)
T ss_pred hcCCceEEecccCCCHHHHHh
Confidence 999999999999999999988
No 132
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=99.15 E-value=4.3e-11 Score=101.87 Aligned_cols=90 Identities=31% Similarity=0.363 Sum_probs=49.0
Q ss_pred CChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHH
Q 021192 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (316)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~ 91 (316)
.+.-++++|++.|+++.++++.. .+.+++.+|-+ .+|+||.|+..|+.+++++|++. .+.+++.+|++|+|||--
T Consensus 505 ~~~i~~~~aa~~GD~~alrRf~l-~g~D~~~~DyD-~RTaLHvAAaEG~v~v~kfl~~~---~kv~~~~kDRw~rtPlDd 579 (622)
T KOG0506|consen 505 DTVINVMYAAKNGDLSALRRFAL-QGMDLETKDYD-DRTALHVAAAEGHVEVVKFLLNA---CKVDPDPKDRWGRTPLDD 579 (622)
T ss_pred cchhhhhhhhhcCCHHHHHHHHH-hcccccccccc-cchhheeecccCceeHHHHHHHH---HcCCCChhhccCCCcchH
Confidence 34445555555555555555552 34555555533 55555555555555555555553 455555555555555555
Q ss_pred HHHcCCHHHHHHHHh
Q 021192 92 AAKNGCNEAAKLLLA 106 (316)
Q Consensus 92 a~~~~~~~~~~~Ll~ 106 (316)
|..++|.+++++|-+
T Consensus 580 A~~F~h~~v~k~L~~ 594 (622)
T KOG0506|consen 580 AKHFKHKEVVKLLEE 594 (622)
T ss_pred hHhcCcHHHHHHHHH
Confidence 555555555555544
No 133
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.14 E-value=7.9e-11 Score=99.53 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=53.2
Q ss_pred CCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhhcCC----cEEEec
Q 021192 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSEI----TCLTFI 315 (316)
Q Consensus 240 ~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~----~~~~f~ 315 (316)
.....+|+||||||+|||++|++||+.... .|..+++. -.+-+.+|++|++|+... -.||||
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~~~~~-------~f~~~sAv-------~~gvkdlr~i~e~a~~~~~~gr~tiLfl 110 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAGTTNA-------AFEALSAV-------TSGVKDLREIIEEARKNRLLGRRTILFL 110 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHHhhCC-------ceEEeccc-------cccHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 357788999999999999999999999998 89999985 455788999999995543 488886
No 134
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.13 E-value=1.4e-10 Score=91.56 Aligned_cols=87 Identities=24% Similarity=0.315 Sum_probs=55.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..+++++|++.+++.++-++..... ..+...|++||||||+|||++|+.+|+++.. ++..++
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~-----------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~-------~~~~~s 82 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKK-----------RGEALDHMLFYGPPGLGKTTLARIIANELGV-------NFKITS 82 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHC-----------TTS---EEEEESSTTSSHHHHHHHHHHHCT---------EEEEE
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHh-----------cCCCcceEEEECCCccchhHHHHHHHhccCC-------CeEecc
Confidence 4578899999999887665443321 1246678999999999999999999999998 888777
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+..+ + ....+..++.... ...|+||
T Consensus 83 g~~i-~-----k~~dl~~il~~l~--~~~ILFI 107 (233)
T PF05496_consen 83 GPAI-E-----KAGDLAAILTNLK--EGDILFI 107 (233)
T ss_dssp CCC--------SCHHHHHHHHT----TT-EEEE
T ss_pred chhh-h-----hHHHHHHHHHhcC--CCcEEEE
Confidence 7532 1 1344555565553 3447886
No 135
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=99.06 E-value=7e-10 Score=95.09 Aligned_cols=89 Identities=28% Similarity=0.320 Sum_probs=74.6
Q ss_pred ChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHH
Q 021192 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (316)
Q Consensus 13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a 92 (316)
-..-||.+++.|+.+.+.+|| .-|+++|......|.||||.|++.|+..-+++|+- .|+|++..|.+|.||+-+|
T Consensus 133 LsrQLhasvRt~nlet~LRll-~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v----YGAD~~a~d~~GmtP~~~A 207 (669)
T KOG0818|consen 133 LSKQLHSSVRTGNLETCLRLL-SLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAV----YGADPGAQDSSGMTPVDYA 207 (669)
T ss_pred HHHHHHHHhhcccHHHHHHHH-HcccccCCCCcccCCchhHHHHhccchhhhhHHhh----ccCCCCCCCCCCCcHHHHH
Confidence 345688899999999888888 56788888887779999999999999888898888 7888889999999999999
Q ss_pred HHcCCHHHHHHHHh
Q 021192 93 AKNGCNEAAKLLLA 106 (316)
Q Consensus 93 ~~~~~~~~~~~Ll~ 106 (316)
-..||.++.+-|++
T Consensus 208 R~~gH~~laeRl~e 221 (669)
T KOG0818|consen 208 RQGGHHELAERLVE 221 (669)
T ss_pred HhcCchHHHHHHHH
Confidence 88888877666553
No 136
>PF13606 Ank_3: Ankyrin repeat
Probab=99.06 E-value=2.3e-10 Score=60.89 Aligned_cols=28 Identities=57% Similarity=0.829 Sum_probs=13.1
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCcc
Q 021192 85 GETPLHMAAKNGCNEAAKLLLAHGAFIE 112 (316)
Q Consensus 85 g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~ 112 (316)
|+||||+||+.|+.+++++|+++|+|+|
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 4444444444444444444444444443
No 137
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=99.03 E-value=1e-09 Score=94.04 Aligned_cols=85 Identities=32% Similarity=0.341 Sum_probs=74.8
Q ss_pred HHHHHHhCCCHHHHHHHHcCCCCCcccccccc-CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhh
Q 021192 51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 129 (316)
Q Consensus 51 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~ 129 (316)
-||-.++.|+.++.-.||. .|+++|.-+ ..|.||||+|++.|+...+++|+-+|||+++.|.+|.||+.+|-
T Consensus 136 QLhasvRt~nlet~LRll~----lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR--- 208 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLS----LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYAR--- 208 (669)
T ss_pred HHHHHhhcccHHHHHHHHH----cccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHH---
Confidence 4899999999998888888 788888887 56899999999999999999999999999999999999999998
Q ss_pred hccCcHHHHHHHHh
Q 021192 130 IRSEDYATVKTLLE 143 (316)
Q Consensus 130 ~~~~~~~~~~~Ll~ 143 (316)
..||.++.+-|++
T Consensus 209 -~~gH~~laeRl~e 221 (669)
T KOG0818|consen 209 -QGGHHELAERLVE 221 (669)
T ss_pred -hcCchHHHHHHHH
Confidence 8888888877665
No 138
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.01 E-value=1e-10 Score=105.97 Aligned_cols=87 Identities=29% Similarity=0.395 Sum_probs=79.7
Q ss_pred CccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccc-CCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCC
Q 021192 74 DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 152 (316)
Q Consensus 74 ~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~ 152 (316)
++.-.|++|..|+|+||+++..+..+++++|+.+|+|++.+|. .|+||||-|. ..|+++++-+|+.+|+....+|
T Consensus 41 c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRai----yyG~idca~lLL~~g~SL~i~D 116 (1267)
T KOG0783|consen 41 CQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAI----YYGNIDCASLLLSKGRSLRIKD 116 (1267)
T ss_pred hhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhh----hhchHHHHHHHHhcCCceEEec
Confidence 3445889999999999999999999999999999999999986 5999999999 7899999999999999999999
Q ss_pred CCCCCccccccC
Q 021192 153 NEGKTPLDHLSN 164 (316)
Q Consensus 153 ~~g~tpl~~~a~ 164 (316)
++|.+||+..+.
T Consensus 117 keglsplq~~~r 128 (1267)
T KOG0783|consen 117 KEGLSPLQFLSR 128 (1267)
T ss_pred ccCCCHHHHHhh
Confidence 999999965544
No 139
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=99.00 E-value=1.4e-09 Score=94.77 Aligned_cols=120 Identities=27% Similarity=0.263 Sum_probs=92.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcC
Q 021192 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG 96 (316)
Q Consensus 17 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~ 96 (316)
|..|+..+++-.++..... |.++-.++.. ..|.||+|+..|+-+||+|+|++++ ..-++..|..|.|+||-|+..+
T Consensus 870 il~av~~~D~~klqE~h~~-gg~ll~~~~~-~~sllh~a~~tg~~eivkyildh~p--~elld~~de~get~lhkaa~~~ 945 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHLN-GGSLLIQGPD-HCSLLHYAAKTGNGEIVKYILDHGP--SELLDMADETGETALHKAACQR 945 (1004)
T ss_pred HHHHHHhccHHHHHHHHhc-CCceEeeCcc-hhhHHHHHHhcCChHHHHHHHhcCC--HHHHHHHhhhhhHHHHHHHHhc
Confidence 5677777776666666543 4444555544 7788999999999999999998643 2345677788999999888888
Q ss_pred CHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhc
Q 021192 97 CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144 (316)
Q Consensus 97 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ 144 (316)
+-.++++|++.|+.+...|..|.||-.-|- +.+.++.+-+|-.+
T Consensus 946 ~r~vc~~lvdagasl~ktd~kg~tp~eraq----qa~d~dlaayle~r 989 (1004)
T KOG0782|consen 946 NRAVCQLLVDAGASLRKTDSKGKTPQERAQ----QAGDPDLAAYLESR 989 (1004)
T ss_pred chHHHHHHHhcchhheecccCCCChHHHHH----hcCCchHHHHHhhh
Confidence 888999999999988888899999988888 78888888777543
No 140
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.99 E-value=4.4e-10 Score=95.86 Aligned_cols=90 Identities=24% Similarity=0.249 Sum_probs=74.6
Q ss_pred CCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhc-CCCccccccCCCcHHHHHh
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLSV 126 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~a~ 126 (316)
+.-++.+|++.|.+..++.+.- .+.|++.+|.+.+|+||.|+.-|+.+++++|++. +.+++.+|++|+|||.-|.
T Consensus 506 ~~i~~~~aa~~GD~~alrRf~l----~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~ 581 (622)
T KOG0506|consen 506 TVINVMYAAKNGDLSALRRFAL----QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK 581 (622)
T ss_pred chhhhhhhhhcCCHHHHHHHHH----hcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence 5667888888888888887776 6788888888888888888888888888888875 6888888888888888888
Q ss_pred hhhhccCcHHHHHHHHhcC
Q 021192 127 WYSIRSEDYATVKTLLEYN 145 (316)
Q Consensus 127 ~~~~~~~~~~~~~~Ll~~g 145 (316)
.-+|.+++++|-++.
T Consensus 582 ----~F~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 582 ----HFKHKEVVKLLEEAQ 596 (622)
T ss_pred ----hcCcHHHHHHHHHHh
Confidence 677888888887653
No 141
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.99 E-value=7.5e-10 Score=60.77 Aligned_cols=30 Identities=57% Similarity=0.841 Sum_probs=13.8
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCcccc
Q 021192 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAK 114 (316)
Q Consensus 85 g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~ 114 (316)
|+||||+|+..|+.+++++|+++|++++.+
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~ 31 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADINAR 31 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTTCB
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCCCC
Confidence 444444444444444444444444444443
No 142
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.98 E-value=1.5e-09 Score=94.71 Aligned_cols=94 Identities=23% Similarity=0.284 Sum_probs=81.5
Q ss_pred HHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhh
Q 021192 51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSI 130 (316)
Q Consensus 51 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~ 130 (316)
-|..|+...++..+-+||.++.....+-..-+.+|+|+||+||+.|++.+.++|+-+|+|+-++|..|+|+|.||-
T Consensus 627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar---- 702 (749)
T KOG0705|consen 627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYAR---- 702 (749)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHh----
Confidence 3566778888999999999665444444455678899999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHhcCCCC
Q 021192 131 RSEDYATVKTLLEYNADC 148 (316)
Q Consensus 131 ~~~~~~~~~~Ll~~ga~~ 148 (316)
+.+.-+++..|+++|+..
T Consensus 703 ~a~sqec~d~llq~gcp~ 720 (749)
T KOG0705|consen 703 QAGSQECIDVLLQYGCPD 720 (749)
T ss_pred hcccHHHHHHHHHcCCCc
Confidence 899999999999999764
No 143
>PF13606 Ank_3: Ankyrin repeat
Probab=98.93 E-value=1.3e-09 Score=58.03 Aligned_cols=29 Identities=41% Similarity=0.604 Sum_probs=25.3
Q ss_pred CCCcHHHHHHhCCCHHHHHHHHcCCCCCccccc
Q 021192 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79 (316)
Q Consensus 47 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 79 (316)
+|+||||+||+.|+.+++++||+ .|+|+|
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~----~gadvn 29 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLE----HGADVN 29 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHH----cCCCCC
Confidence 38899999999999999999999 677776
No 144
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.91 E-value=9.5e-09 Score=88.97 Aligned_cols=89 Identities=24% Similarity=0.321 Sum_probs=66.2
Q ss_pred hhhchHHHHHHHHHHHHHHHhHHHHHHcCCc-cCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccc
Q 021192 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLK-VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (316)
Q Consensus 207 ~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~ 285 (316)
.++|+.+.+..+...+. ...++..+.-. .....|.+++++||||+|||++|+++|+.+.. +++.++.+.
T Consensus 13 ~IiGQ~eAkk~lsvAl~---n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~-------~fi~vdat~ 82 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALR---NRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA-------PFIKVEATK 82 (441)
T ss_pred hccCHHHHHHHHHHHHH---hhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC-------eEEEeecce
Confidence 37788888877744222 11122211111 11235689999999999999999999999988 999999998
Q ss_pred ccc-cccc-CchHHHHHHHHHh
Q 021192 286 LVG-EFVG-HTGPKTRRRVGHL 305 (316)
Q Consensus 286 ~~~-~~~g-~~~~~~~~~~~~a 305 (316)
+.. .|+| +.+..+|.+|+.|
T Consensus 83 ~~e~g~vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 83 FTEVGYVGRDVESMVRDLTDAA 104 (441)
T ss_pred eecCCcccCCHHHHHHHHHHHH
Confidence 885 7999 6789999999998
No 145
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.90 E-value=2e-09 Score=59.02 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=29.3
Q ss_pred CCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccC
Q 021192 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM 83 (316)
Q Consensus 47 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 83 (316)
+|.||||+|+..|+.+++++|++ .|++++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~----~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLK----HGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHH----TTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHH----CcCCCCCCCC
Confidence 38999999999999999999999 7888888763
No 146
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.90 E-value=6.6e-09 Score=89.97 Aligned_cols=101 Identities=25% Similarity=0.342 Sum_probs=72.2
Q ss_pred HHHHHHhh-hhchHHHHHHHHHHHHHHHhHHHHHHcCCcc-CCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCC
Q 021192 200 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKV-GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (316)
Q Consensus 200 ~~~~~l~~-i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~ 277 (316)
++...++. ++|++..++.+...+. ...++..+.-.. ....+.+++|+||||+|||++|+++|+.+.. +
T Consensus 8 ~I~~~Ld~~IiGQe~AkkalavAl~---~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~-------~ 77 (443)
T PRK05201 8 EIVSELDKYIIGQDDAKRAVAIALR---NRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA-------P 77 (443)
T ss_pred HHHHHhccccCCHHHHHHHHHHHHH---HHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC-------h
Confidence 34445544 7888888888865332 111222111111 1124689999999999999999999999988 9
Q ss_pred eeeeccccccc-cccc-CchHHHHHHHHHhhcCCc
Q 021192 278 VTEVQRTDLVG-EFVG-HTGPKTRRRVGHLLSEIT 310 (316)
Q Consensus 278 ~~~~~~~~~~~-~~~g-~~~~~~~~~~~~a~~~~~ 310 (316)
|+.++.+.+.. .|+| ..+..+|++|+.|...+|
T Consensus 78 fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~ 112 (443)
T PRK05201 78 FIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVR 112 (443)
T ss_pred heeecchhhccCCcccCCHHHHHHHHHHHHHHHhH
Confidence 99999998886 7999 558999999999954433
No 147
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.87 E-value=5.6e-09 Score=90.64 Aligned_cols=87 Identities=23% Similarity=0.376 Sum_probs=55.0
Q ss_pred hhHHHHHhcCCHHHHHHHH-hhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHH
Q 021192 15 ATIHGCAQSGDLLAFQRLL-RENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA 93 (316)
Q Consensus 15 t~L~~A~~~g~~~~v~~ll-~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~ 93 (316)
-|||++....+.+.....+ .+....++.+|.. |.||||.|+..|+.+.++.|+. .++++..+|+.||+|||.|+
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~-g~TpLhlAV~Lg~~~~a~~Ll~----a~Adv~~kN~~gWs~L~EAv 96 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPP-GRTPLHLAVRLGHVEAARILLS----AGADVSIKNNEGWSPLHEAV 96 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCC-CCccHHHHHHhcCHHHHHHHHh----cCCCccccccccccHHHHHH
Confidence 3466666666655554433 2334456666655 6777777777777777777776 56667777777777777777
Q ss_pred HcCCHHHHHHHHh
Q 021192 94 KNGCNEAAKLLLA 106 (316)
Q Consensus 94 ~~~~~~~~~~Ll~ 106 (316)
..|+.+++..++.
T Consensus 97 ~~g~~q~i~~vlr 109 (560)
T KOG0522|consen 97 STGNEQIITEVLR 109 (560)
T ss_pred HcCCHHHHHHHHH
Confidence 7776666655554
No 148
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.85 E-value=6.2e-09 Score=99.05 Aligned_cols=74 Identities=20% Similarity=0.342 Sum_probs=62.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCC---CCCCCeeeecccccc--cccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTEVQRTDLV--GEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~---~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
...+++|+||||+|||++++.+|+.+..... +....++.++.+.++ .+|.|+.+.+++++|+++....++||||
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfi 280 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFI 280 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEE
Confidence 5567999999999999999999999854221 123468888888887 5899999999999999998888999997
No 149
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.79 E-value=1.4e-08 Score=88.73 Aligned_cols=116 Identities=24% Similarity=0.265 Sum_probs=93.8
Q ss_pred HHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCC--ccccccCCCcHHHHHhhhhh
Q 021192 53 HVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF--IEAKANNGMTPLHLSVWYSI 130 (316)
Q Consensus 53 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~a~~~~~ 130 (316)
..|+..+++-.++..-. .|.++..++.+.+|.||+|+.-|+-++|++++++|.. ++..|..|.|+||.|+
T Consensus 871 l~av~~~D~~klqE~h~----~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa---- 942 (1004)
T KOG0782|consen 871 LRAVLSSDLMKLQETHL----NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAA---- 942 (1004)
T ss_pred HHHHHhccHHHHHHHHh----cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHH----
Confidence 34444454444444444 5778889999999999999999999999999999864 7888999999999998
Q ss_pred ccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHH
Q 021192 131 RSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW 177 (316)
Q Consensus 131 ~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~ 177 (316)
-.++-.++.+|++.|+.....|..|.||-.. |...+..++..+|..
T Consensus 943 ~~~~r~vc~~lvdagasl~ktd~kg~tp~er-aqqa~d~dlaayle~ 988 (1004)
T KOG0782|consen 943 CQRNRAVCQLLVDAGASLRKTDSKGKTPQER-AQQAGDPDLAAYLES 988 (1004)
T ss_pred HhcchHHHHHHHhcchhheecccCCCChHHH-HHhcCCchHHHHHhh
Confidence 7788899999999999999999999999944 444555666666654
No 150
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.78 E-value=1.5e-08 Score=97.54 Aligned_cols=75 Identities=21% Similarity=0.311 Sum_probs=62.7
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhc---CCCCCCCeeeecccccc--cccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTEVQRTDLV--GEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~---g~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
....+++++||||+|||++++.+|..+... ..+....+++++.++++ .+|.|+.+.+++++|+++....++||||
T Consensus 198 ~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfi 277 (821)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVI 277 (821)
T ss_pred cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEE
Confidence 355689999999999999999999998641 12234478899988887 5789999999999999998888999997
No 151
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.76 E-value=6.7e-08 Score=85.16 Aligned_cols=108 Identities=20% Similarity=0.278 Sum_probs=71.0
Q ss_pred hHHHHHHHhh-hhchHHHHHHHHHHHHHHHhHHHHHHcCCc---cCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCC
Q 021192 198 MDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLK---VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL 273 (316)
Q Consensus 198 ~~~~~~~l~~-i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~---~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~ 273 (316)
..++...+++ ++|++.+++.+...+.. ...+...... ....+..+++|+||||+|||++|+++|+.+..
T Consensus 62 p~~i~~~L~~~ViGq~~ak~~l~~av~~---~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~---- 134 (412)
T PRK05342 62 PKEIKAHLDQYVIGQERAKKVLSVAVYN---HYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV---- 134 (412)
T ss_pred HHHHHHHHhhHeeChHHHHHHHHHHHHH---HHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC----
Confidence 3455556654 78899888887543211 1111111111 11124578999999999999999999999887
Q ss_pred CCCCeeeecccccc-cccccCchHH-HHHHHHHhh----cCCcEEEec
Q 021192 274 PTDRVTEVQRTDLV-GEFVGHTGPK-TRRRVGHLL----SEITCLTFI 315 (316)
Q Consensus 274 ~~~~~~~~~~~~~~-~~~~g~~~~~-~~~~~~~a~----~~~~~~~f~ 315 (316)
+|+.++.+.+. ..|+|+.... ++.+++.+. ...+.||||
T Consensus 135 ---pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~i 179 (412)
T PRK05342 135 ---PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYI 179 (412)
T ss_pred ---CceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEE
Confidence 99999988775 4689987554 456555432 245678876
No 152
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.75 E-value=4.2e-07 Score=83.67 Aligned_cols=124 Identities=20% Similarity=0.247 Sum_probs=101.0
Q ss_pred ChhhHHHHHhcCCHHHHHHHHhhCC---CcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHH
Q 021192 13 KPATIHGCAQSGDLLAFQRLLRENP---SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (316)
Q Consensus 13 ~~t~L~~A~~~g~~~~v~~ll~~~~---~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L 89 (316)
+.-....||..|+...|+..|.... .++|..|.- |+++||.|+.+-+.+++++|+++ ...+ ..+|
T Consensus 25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~l-Gr~al~iai~nenle~~eLLl~~----~~~~-------gdAL 92 (822)
T KOG3609|consen 25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPL-GRLALHIAIDNENLELQELLLDT----SSEE-------GDAL 92 (822)
T ss_pred hhHHHHHHHHcCChHHHHHHHHhccccccchhccChH-hhhceecccccccHHHHHHHhcC----cccc-------chHH
Confidence 3445678999999999999998755 468888876 99999999999999999999993 3333 2589
Q ss_pred HHHHHcCCHHHHHHHHhcCCCc----------cccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCC
Q 021192 90 HMAAKNGCNEAAKLLLAHGAFI----------EAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 152 (316)
Q Consensus 90 h~a~~~~~~~~~~~Ll~~g~~~----------~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~ 152 (316)
.+|+..|..+.|++++.+.... ...-..+-|||.+|| ..+++||+++|+.+|+.+...-
T Consensus 93 L~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAA----h~NnyEil~~Ll~kg~~i~~PH 161 (822)
T KOG3609|consen 93 LLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAA----HLNNFEILQCLLTRGHCIPIPH 161 (822)
T ss_pred HHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHH----HhcchHHHHHHHHcCCCCCCCc
Confidence 9999999999999999864332 122335789999999 8899999999999999876543
No 153
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.74 E-value=3.5e-08 Score=86.44 Aligned_cols=93 Identities=25% Similarity=0.271 Sum_probs=77.5
Q ss_pred hHHHHHhcCCHHHHHHHHhhCC-CcccCC-CCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHH
Q 021192 16 TIHGCAQSGDLLAFQRLLRENP-SLLNER-NPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA 93 (316)
Q Consensus 16 ~L~~A~~~g~~~~v~~ll~~~~-~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~ 93 (316)
-|.-|....++..+..||.++. ..+|.. ...+|.|+||+||+.|++.+.++|+- .|+|+..+|..|+|+|.||-
T Consensus 627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW----yg~dv~~rda~g~t~l~yar 702 (749)
T KOG0705|consen 627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW----YGVDVMARDAHGRTALFYAR 702 (749)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH----hCccceecccCCchhhhhHh
Confidence 4667888888888888886543 223333 33348999999999999999999998 89999999999999999999
Q ss_pred HcCCHHHHHHHHhcCCCcc
Q 021192 94 KNGCNEAAKLLLAHGAFIE 112 (316)
Q Consensus 94 ~~~~~~~~~~Ll~~g~~~~ 112 (316)
+.|..+|+..|+.+|+..+
T Consensus 703 ~a~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 703 QAGSQECIDVLLQYGCPDE 721 (749)
T ss_pred hcccHHHHHHHHHcCCCcc
Confidence 9999999999999998543
No 154
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.72 E-value=5.5e-08 Score=84.59 Aligned_cols=87 Identities=30% Similarity=0.454 Sum_probs=72.8
Q ss_pred cHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhh
Q 021192 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 129 (316)
Q Consensus 50 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~ 129 (316)
-|||+++.....+-+..++... ....++.+|..|+||||+|+.-|+.+.++.|+..|+++..+|+.|++|||.|+
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~--~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv--- 96 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAK--VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAV--- 96 (560)
T ss_pred cccchhhhccchhhHHHHHhhh--hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHH---
Confidence 3599999888776666655421 45678899999999999999999999999999999999999999999999999
Q ss_pred hccCcHHHHHHHH
Q 021192 130 IRSEDYATVKTLL 142 (316)
Q Consensus 130 ~~~~~~~~~~~Ll 142 (316)
..|+.+++..++
T Consensus 97 -~~g~~q~i~~vl 108 (560)
T KOG0522|consen 97 -STGNEQIITEVL 108 (560)
T ss_pred -HcCCHHHHHHHH
Confidence 677777665554
No 155
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.71 E-value=2.4e-08 Score=80.97 Aligned_cols=58 Identities=29% Similarity=0.449 Sum_probs=46.6
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
.+.+.+.+|++.+++.+.-.+..... | .+..-|++|+||||.|||+||+.+|+++...
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~---r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKK---R--------GEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHh---c--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 35678899999999998775443322 1 2567799999999999999999999999983
No 156
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.71 E-value=1.8e-08 Score=84.37 Aligned_cols=65 Identities=28% Similarity=0.384 Sum_probs=50.3
Q ss_pred CCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhh-----cCCcEEEe
Q 021192 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLL-----SEITCLTF 314 (316)
Q Consensus 240 ~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-----~~~~~~~f 314 (316)
......++|+||||||||++||.|+.....-- =.|+++++. .-.-+.+|.+|++|. .+.-.|||
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt-------~a~t~dvR~ife~aq~~~~l~krkTilF 227 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSAT-------NAKTNDVRDIFEQAQNEKSLTKRKTILF 227 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEecc-------ccchHHHHHHHHHHHHHHhhhcceeEEE
Confidence 35677899999999999999999999877611 138888875 334567899999984 35667888
Q ss_pred c
Q 021192 315 I 315 (316)
Q Consensus 315 ~ 315 (316)
|
T Consensus 228 i 228 (554)
T KOG2028|consen 228 I 228 (554)
T ss_pred e
Confidence 6
No 157
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.67 E-value=1.5e-07 Score=90.32 Aligned_cols=91 Identities=15% Similarity=0.275 Sum_probs=66.7
Q ss_pred hhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccc
Q 021192 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (316)
Q Consensus 207 ~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~ 286 (316)
+.+|++.+++.+.++..... .+. ......++|+||||+|||++|+++|+.+.. +++.++...+
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~---~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~-------~~~~i~~~~~ 383 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQK---LRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNR-------KFVRFSLGGV 383 (775)
T ss_pred hcCChHHHHHHHHHHHHHHH---hhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcC-------CeEEEeCCCc
Confidence 36788888888877554221 111 113347999999999999999999999987 7777754322
Q ss_pred ---------ccccccCchHHHHHHHHHhhcCCcEEEe
Q 021192 287 ---------VGEFVGHTGPKTRRRVGHLLSEITCLTF 314 (316)
Q Consensus 287 ---------~~~~~g~~~~~~~~~~~~a~~~~~~~~f 314 (316)
...|+|....++.+.|..+....|+|+|
T Consensus 384 ~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~vill 420 (775)
T TIGR00763 384 RDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLL 420 (775)
T ss_pred ccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEE
Confidence 2468899888999999999877786654
No 158
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.62 E-value=1.5e-07 Score=78.63 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=33.4
Q ss_pred hhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHc
Q 021192 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLE 69 (316)
Q Consensus 15 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~ 69 (316)
--|..||+.|+++.|++|++ .|.++|..|.. ..+||.+|+..||.++|++||+
T Consensus 38 ~elceacR~GD~d~v~~LVe-tgvnVN~vD~f-D~spL~lAsLcGHe~vvklLLe 90 (516)
T KOG0511|consen 38 GELCEACRAGDVDRVRYLVE-TGVNVNAVDRF-DSSPLYLASLCGHEDVVKLLLE 90 (516)
T ss_pred HHHHHHhhcccHHHHHHHHH-hCCCcchhhcc-cccHHHHHHHcCcHHHHHHHHH
Confidence 34566666666666666663 56666666655 5666666666666666666666
No 159
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.58 E-value=2.3e-07 Score=70.26 Aligned_cols=85 Identities=16% Similarity=0.114 Sum_probs=63.0
Q ss_pred CCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCc-cccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccc
Q 021192 37 PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK-VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA 115 (316)
Q Consensus 37 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~ 115 (316)
..++|.+|.+ |+|||++|+..|+.+.+.+|+. .| +.+...|..|.+++.+|-..|..++++.|-++..+-...+
T Consensus 2 e~~in~rD~f-gWTalmcaa~eg~~eavsyllg----rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~ 76 (223)
T KOG2384|consen 2 EGNINARDAF-GWTALMCAAMEGSNEAVSYLLG----RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM 76 (223)
T ss_pred CCCccchhhh-cchHHHHHhhhcchhHHHHHhc----cCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence 3567888876 8888888888888888888888 55 7788888888888888888888888888887765554444
Q ss_pred cCCCcHHHHHh
Q 021192 116 NNGMTPLHLSV 126 (316)
Q Consensus 116 ~~g~t~L~~a~ 126 (316)
+.-.++--.+|
T Consensus 77 nss~~e~lfyC 87 (223)
T KOG2384|consen 77 NSSRDEALFYC 87 (223)
T ss_pred cCCCCCccchh
Confidence 44443333334
No 160
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=8.9e-08 Score=87.38 Aligned_cols=66 Identities=29% Similarity=0.396 Sum_probs=63.3
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
...++++|+||+|||++.+++|++++. ++++++..+++..-.+++|.+...+|..|+-..|+|||+
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~-------h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl 496 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGL-------HLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFL 496 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCC-------ceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEE
Confidence 456889999999999999999999999 999999999999999999999999999999999999997
No 161
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.55 E-value=2.9e-07 Score=82.09 Aligned_cols=82 Identities=27% Similarity=0.344 Sum_probs=56.9
Q ss_pred HHhhhhchHHHHHH---HHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeee
Q 021192 204 ELSNIVGLHELKIQ---LRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (316)
Q Consensus 204 ~l~~i~~~~~~k~~---l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~ 280 (316)
.+++++|.+.+... +..++. ...+.+++|+||||+|||++|+++++.+.. .+++
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~----------------~~~~~~ilL~GppGtGKTtLA~~ia~~~~~-------~~~~ 66 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIE----------------AGRLSSMILWGPPGTGKTTLARIIAGATDA-------PFEA 66 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHH----------------cCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEE
Confidence 45667777666444 443322 234558999999999999999999998876 7888
Q ss_pred ecccccccccccCchHHHHHHHHHhh----cCCcEEEec
Q 021192 281 VQRTDLVGEFVGHTGPKTRRRVGHLL----SEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~----~~~~~~~f~ 315 (316)
++... .+...++++++.+. .+...||||
T Consensus 67 l~a~~-------~~~~~ir~ii~~~~~~~~~g~~~vL~I 98 (413)
T PRK13342 67 LSAVT-------SGVKDLREVIEEARQRRSAGRRTILFI 98 (413)
T ss_pred Eeccc-------ccHHHHHHHHHHHHHhhhcCCceEEEE
Confidence 87652 23456778887774 345667775
No 162
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.53 E-value=1.8e-07 Score=76.78 Aligned_cols=70 Identities=31% Similarity=0.457 Sum_probs=51.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..++++.+++.+...+...+. ....++++||||||||||+.|+++++.+....+.+- .+.+..
T Consensus 33 kt~de~~gQe~vV~~L~~a~~----------------~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~-rvl~ln 95 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALL----------------RRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPC-RVLELN 95 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHh----------------hcCCceEEeeCCCCCcHhHHHHHHHHHhcCcccccc-chhhhc
Confidence 456777888888877766333 135678999999999999999999999988444333 466666
Q ss_pred ccccccc
Q 021192 283 RTDLVGE 289 (316)
Q Consensus 283 ~~~~~~~ 289 (316)
++|--|.
T Consensus 96 aSderGi 102 (346)
T KOG0989|consen 96 ASDERGI 102 (346)
T ss_pred ccccccc
Confidence 6665554
No 163
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.53 E-value=6.3e-07 Score=78.71 Aligned_cols=110 Identities=18% Similarity=0.244 Sum_probs=66.5
Q ss_pred hHHHHHHHhh-hhchHHHHHHHHHHHHHHHhHHHHHHcCCccC---CCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCC
Q 021192 198 MDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVG---ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL 273 (316)
Q Consensus 198 ~~~~~~~l~~-i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~---~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~ 273 (316)
..++...+++ ++|++..++.+...+... +...+........ .....+++|.||||+|||++|+++|..+..
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h-~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~---- 142 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNH-YKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV---- 142 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHH-HhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC----
Confidence 3445555555 588888888775432110 0110000000000 113468999999999999999999998876
Q ss_pred CCCCeeeecccccc-cccccCch-HHHHHHHHHhh----cCCcEEEec
Q 021192 274 PTDRVTEVQRTDLV-GEFVGHTG-PKTRRRVGHLL----SEITCLTFI 315 (316)
Q Consensus 274 ~~~~~~~~~~~~~~-~~~~g~~~-~~~~~~~~~a~----~~~~~~~f~ 315 (316)
++..++++.+. ..|+|+.. ..+.++++.+. ...+.||||
T Consensus 143 ---pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~l 187 (413)
T TIGR00382 143 ---PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYI 187 (413)
T ss_pred ---CeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEe
Confidence 88888877765 36899864 44555554332 234567775
No 164
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.53 E-value=2.4e-07 Score=89.36 Aligned_cols=73 Identities=23% Similarity=0.379 Sum_probs=57.7
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCC----CCCCeeeecccccc--cccccCchHHHHHHHHHhh-cCCcEEEe
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGIL----PTDRVTEVQRTDLV--GEFVGHTGPKTRRRVGHLL-SEITCLTF 314 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~----~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~a~-~~~~~~~f 314 (316)
...+++|+||||+|||++++.++..... |.+ ..-+++.++...++ .+|.|+.+.+++++|+++. .+.++|||
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILf 276 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQRIIN-GEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF 276 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHHHhhc-CCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEE
Confidence 4457899999999999999999998853 111 13367777777666 5689999999999999864 46789999
Q ss_pred c
Q 021192 315 I 315 (316)
Q Consensus 315 ~ 315 (316)
|
T Consensus 277 I 277 (857)
T PRK10865 277 I 277 (857)
T ss_pred E
Confidence 7
No 165
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.52 E-value=1.2e-07 Score=89.24 Aligned_cols=74 Identities=39% Similarity=0.480 Sum_probs=41.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 021192 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL 162 (316)
Q Consensus 85 g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~ 162 (316)
|.|+||.|+..+..-++++|+++|+++|..|..|+||||.+. ..|+...+..|+++|++++..+.+|.+|++++
T Consensus 656 ~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~----~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a 729 (785)
T KOG0521|consen 656 GCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHAT----ASGHTSIACLLLKRGADPNAFDPDGKLPLDIA 729 (785)
T ss_pred ccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhh----hhcccchhhhhccccccccccCccCcchhhHH
Confidence 455555555555555555555555555555555555555555 45555555555555555555555555555444
No 166
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.52 E-value=7.3e-08 Score=90.66 Aligned_cols=87 Identities=31% Similarity=0.416 Sum_probs=79.6
Q ss_pred CCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhh
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~ 127 (316)
|.|+||.|+..|..-++++|++ .|+++|.+|..|+||||.+...|+...+.+|+++|++.++.+.+|.+||++|.
T Consensus 656 ~~s~lh~a~~~~~~~~~e~ll~----~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~- 730 (785)
T KOG0521|consen 656 GCSLLHVAVGTGDSGAVELLLQ----NGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAM- 730 (785)
T ss_pred ccchhhhhhccchHHHHHHHHh----cCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHh-
Confidence 7999999999999999999999 88899999999999999999999999999999999999999999999999998
Q ss_pred hhhccCcHHHHHHHH
Q 021192 128 YSIRSEDYATVKTLL 142 (316)
Q Consensus 128 ~~~~~~~~~~~~~Ll 142 (316)
...+.+++-++.
T Consensus 731 ---~~~~~d~~~l~~ 742 (785)
T KOG0521|consen 731 ---EAANADIVLLLR 742 (785)
T ss_pred ---hhccccHHHHHh
Confidence 445666655543
No 167
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.51 E-value=9.1e-07 Score=63.62 Aligned_cols=101 Identities=24% Similarity=0.316 Sum_probs=63.2
Q ss_pred hhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec-cc
Q 021192 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ-RT 284 (316)
Q Consensus 206 ~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~-~~ 284 (316)
..+.|++-+.+.+...+..... ...++.|..+.|+|+||||||.+++.||+.++..|.-+.= +.... ..
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~---------~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~-V~~f~~~~ 94 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLA---------NPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPF-VHQFIATH 94 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHc---------CCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCc-eeeecccc
Confidence 4577888777777664442221 1134567888999999999999999999999886654332 22212 11
Q ss_pred cccc-ccccCchHHHHHHHHHhhcCCcEEEecC
Q 021192 285 DLVG-EFVGHTGPKTRRRVGHLLSEITCLTFIW 316 (316)
Q Consensus 285 ~~~~-~~~g~~~~~~~~~~~~a~~~~~~~~f~~ 316 (316)
+.-. ..+-+=...+++++.......|-=+|||
T Consensus 95 hFP~~~~v~~Yk~~L~~~I~~~v~~C~rslFIF 127 (127)
T PF06309_consen 95 HFPHNSNVDEYKEQLKSWIRGNVSRCPRSLFIF 127 (127)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHhCCcCeeeC
Confidence 2111 1111223556777777777777777876
No 168
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.49 E-value=4.8e-07 Score=68.57 Aligned_cols=73 Identities=29% Similarity=0.437 Sum_probs=65.6
Q ss_pred ccccccccCCCChHHHHHHHcCCHHHHHHHHhcC-CCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCC
Q 021192 75 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 151 (316)
Q Consensus 75 ~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~ 151 (316)
..++|.+|.+|||||+.|+..|..+.+.+|+.+| +.+...|..|.+++.+|- +.|..+.+..|.+.-.+-...
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlae----k~g~~~fvh~lfe~~~ets~p 75 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAE----KGGAQAFVHSLFENDRETSHP 75 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHH----hcChHHHHHHHHHHhccCCCc
Confidence 3579999999999999999999999999999999 899999999999999999 999999999999874443333
No 169
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.49 E-value=5.1e-07 Score=86.99 Aligned_cols=74 Identities=19% Similarity=0.206 Sum_probs=57.7
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcC---CCCCCCeeeecccccc--cccccCchHHHHHHHHHhhc-CCcEEEec
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTEVQRTDLV--GEFVGHTGPKTRRRVGHLLS-EITCLTFI 315 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g---~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~a~~-~~~~~~f~ 315 (316)
...+++|+||||+|||++++.+|+.+.... .+....++.++.+.++ .+|.|+.+.+++++|+++.. +.++||||
T Consensus 207 ~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfI 286 (852)
T TIGR03345 207 RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFI 286 (852)
T ss_pred CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 445789999999999999999999886421 1122346667666665 37899999999999999964 67899997
No 170
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.48 E-value=1.9e-07 Score=87.65 Aligned_cols=127 Identities=20% Similarity=0.083 Sum_probs=92.3
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
..--|.+.+|+++..+..-.+..+++..+.....-+.. |.--+|+ |..++.+.+-+|+.. .+..++++|..||||
T Consensus 570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d-~qgV~hf-ca~lg~ewA~ll~~~---~~~ai~i~D~~G~tp 644 (975)
T KOG0520|consen 570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRD-GQGVIHF-CAALGYEWAFLPISA---DGVAIDIRDRNGWTP 644 (975)
T ss_pred CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhccc-CCChhhH-hhhcCCceeEEEEee---cccccccccCCCCcc
Confidence 34567889999999998888888886423333333433 6677777 556666777666654 678899999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCcc------ccccCCCcHHHHHhhhhhccCcHHHHHHHHhc
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIE------AKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~------~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ 144 (316)
||+|+.+|+..++..|++.|++.. ..+..|.|+-.+|. .+|+..+..+|-+.
T Consensus 645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~----s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLAR----ANGHKGIAGYLSEK 702 (975)
T ss_pred cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhh----cccccchHHHHhhh
Confidence 999999999999999998776533 33445788888887 77777776666543
No 171
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.46 E-value=6.7e-07 Score=74.80 Aligned_cols=85 Identities=24% Similarity=0.312 Sum_probs=71.0
Q ss_pred CcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhh
Q 021192 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY 128 (316)
Q Consensus 49 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~ 128 (316)
.--|++||+.|..+.|++|++ .|.++|.+|++..+||.+|+-+||.+++++|+++||-...-..+|.-.+.-|.
T Consensus 37 f~elceacR~GD~d~v~~LVe----tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~YgaL-- 110 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVE----TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGAL-- 110 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHH----hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhhh--
Confidence 345899999999999999999 89999999999999999999999999999999999987766667776655554
Q ss_pred hhccCcHHHHHHHHhc
Q 021192 129 SIRSEDYATVKTLLEY 144 (316)
Q Consensus 129 ~~~~~~~~~~~~Ll~~ 144 (316)
+..+-+.|+.+
T Consensus 111 -----nd~IR~mllsy 121 (516)
T KOG0511|consen 111 -----NDRIRRMLLSY 121 (516)
T ss_pred -----hHHHHHHHHHH
Confidence 23445566654
No 172
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.45 E-value=5.2e-07 Score=85.39 Aligned_cols=74 Identities=18% Similarity=0.297 Sum_probs=57.7
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCC---CCCCCeeeecccccc--cccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTEVQRTDLV--GEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~---~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
...+++++||||+|||.+++.++......+. +....++.++...++ .+|.|+.+.+++++|+.+....++||||
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfI 284 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFI 284 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEe
Confidence 4567899999999999999999987644221 122355666656665 4689999999999999998888899997
No 173
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.44 E-value=6.2e-07 Score=76.89 Aligned_cols=55 Identities=25% Similarity=0.439 Sum_probs=42.2
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++++|.+..++.+..++..... ....+.+++|+||||+|||++|+++++++..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~-----------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~ 56 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM-----------RQEALDHLLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh-----------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467889999999888775532211 1235678999999999999999999998865
No 174
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.44 E-value=1e-06 Score=76.26 Aligned_cols=56 Identities=23% Similarity=0.412 Sum_probs=43.3
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|.+..++.+..+...... ...++.+++|+||||+|||++|+++++++..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-----------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-----------RGEALDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-----------cCCCCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 3577889999988888765542211 1245678999999999999999999999875
No 175
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=5.2e-07 Score=76.87 Aligned_cols=95 Identities=23% Similarity=0.224 Sum_probs=60.0
Q ss_pred HhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccc
Q 021192 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (316)
Q Consensus 205 l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~ 284 (316)
+..++....++..++++...-.. ......+-++++||||||||||.+||-||+....- .--..+.
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaN--------TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlD-------YA~mTGG 418 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATAN--------TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLD-------YAIMTGG 418 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhcc--------cccccchhhheeeeCCCCCCchHHHHHHHhhcCCc-------eehhcCC
Confidence 55566666666666664432211 11122466789999999999999999999987751 1111122
Q ss_pred ccccccccCchHHHHHHHHHhhc-CCcEEEec
Q 021192 285 DLVGEFVGHTGPKTRRRVGHLLS-EITCLTFI 315 (316)
Q Consensus 285 ~~~~~~~g~~~~~~~~~~~~a~~-~~~~~~f~ 315 (316)
|+ ..+=-+.-.+|.++|+-|.. ..-.++||
T Consensus 419 DV-APlG~qaVTkiH~lFDWakkS~rGLllFI 449 (630)
T KOG0742|consen 419 DV-APLGAQAVTKIHKLFDWAKKSRRGLLLFI 449 (630)
T ss_pred Cc-cccchHHHHHHHHHHHHHhhcccceEEEe
Confidence 22 22223445779999999965 45677786
No 176
>PRK04195 replication factor C large subunit; Provisional
Probab=98.37 E-value=2.4e-06 Score=77.83 Aligned_cols=65 Identities=32% Similarity=0.495 Sum_probs=51.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..++++++.....+.+..++.... . ..++.+++++||||+|||++|+++++.+.. .+++++
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~-------~-----g~~~~~lLL~GppG~GKTtla~ala~el~~-------~~ieln 71 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWL-------K-----GKPKKALLLYGPPGVGKTSLAHALANDYGW-------EVIELN 71 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHh-------c-----CCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------CEEEEc
Confidence 356778899999888888765322 1 124678999999999999999999999876 788888
Q ss_pred cccc
Q 021192 283 RTDL 286 (316)
Q Consensus 283 ~~~~ 286 (316)
+++.
T Consensus 72 asd~ 75 (482)
T PRK04195 72 ASDQ 75 (482)
T ss_pred cccc
Confidence 7653
No 177
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.1e-06 Score=76.18 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=64.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..++.++--.+.|+.+.+ .+..-..++.+.......-.++.+||||||||||++.-|+|+++.- .++.++
T Consensus 198 stF~TlaMd~~~K~~I~~---Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y-------dIydLe 267 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIID---DLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY-------DIYDLE 267 (457)
T ss_pred CCccccccChhHHHHHHH---HHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC-------ceEEee
Confidence 445666666666766654 3333333444445555567789999999999999999999999987 677777
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEE
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLT 313 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~ 313 (316)
-+++ +.+.. +|.++-.....+-.||
T Consensus 268 Lt~v-----~~n~d-Lr~LL~~t~~kSIivI 292 (457)
T KOG0743|consen 268 LTEV-----KLDSD-LRHLLLATPNKSILLI 292 (457)
T ss_pred eccc-----cCcHH-HHHHHHhCCCCcEEEE
Confidence 6554 33333 8888887766555444
No 178
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.36 E-value=9.6e-07 Score=66.23 Aligned_cols=69 Identities=25% Similarity=0.290 Sum_probs=51.5
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccc--------------cccCchHHHHHHHHHhhcC
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--------------FVGHTGPKTRRRVGHLLSE 308 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~--------------~~g~~~~~~~~~~~~a~~~ 308 (316)
..+++++||||+|||++++.++..+...+ ..++.++....... .........+.+++.|...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG----GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC----CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999988743 23666665543322 2345677888999999888
Q ss_pred CcEEEec
Q 021192 309 ITCLTFI 315 (316)
Q Consensus 309 ~~~~~f~ 315 (316)
.+.||||
T Consensus 78 ~~~viii 84 (148)
T smart00382 78 KPDVLIL 84 (148)
T ss_pred CCCEEEE
Confidence 7777775
No 179
>PLN03025 replication factor C subunit; Provisional
Probab=98.36 E-value=2.7e-06 Score=73.25 Aligned_cols=65 Identities=29% Similarity=0.387 Sum_probs=45.9
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
.++++++..++.+.++.+.. .....+++|+||||+|||++|+++++.+...+. ...++++++
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~----------------~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~--~~~~~eln~ 72 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIAR----------------DGNMPNLILSGPPGTGKTTSILALAHELLGPNY--KEAVLELNA 72 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHh----------------cCCCceEEEECCCCCCHHHHHHHHHHHHhcccC--ccceeeecc
Confidence 46677777777777665433 123457999999999999999999999865332 124667777
Q ss_pred ccc
Q 021192 284 TDL 286 (316)
Q Consensus 284 ~~~ 286 (316)
+|.
T Consensus 73 sd~ 75 (319)
T PLN03025 73 SDD 75 (319)
T ss_pred ccc
Confidence 654
No 180
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.35 E-value=1.2e-06 Score=84.85 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=57.4
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhcC---CCCCCCeeeecccccc--cccccCchHHHHHHHHHhhc-CCcEEEe
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTEVQRTDLV--GEFVGHTGPKTRRRVGHLLS-EITCLTF 314 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~g---~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~a~~-~~~~~~f 314 (316)
....+++++||||+|||++++.++..+.... .+..-+++.++...++ .+|.|+.+.+++++|+.+.. +.++|||
T Consensus 192 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILf 271 (852)
T TIGR03346 192 RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILF 271 (852)
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEE
Confidence 3456788999999999999999999875310 1112356777766665 57899999999999999865 4689999
Q ss_pred c
Q 021192 315 I 315 (316)
Q Consensus 315 ~ 315 (316)
|
T Consensus 272 I 272 (852)
T TIGR03346 272 I 272 (852)
T ss_pred e
Confidence 7
No 181
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=2.9e-06 Score=75.48 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=40.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|++.+...+...+.. ...+..++|+||||+|||++||++|+.+..
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~---------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKS---------------GKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4577888888888877665441 123334899999999999999999999875
No 182
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=5.6e-06 Score=69.06 Aligned_cols=90 Identities=26% Similarity=0.336 Sum_probs=67.4
Q ss_pred hhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCC-CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccc
Q 021192 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGAR-RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (316)
Q Consensus 207 ~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~ 285 (316)
.++|+.+.|..+-- .+....+|+.+.-.+..+ .|.+++..||.|.|||.+||.+|+.... ||+.|.++.
T Consensus 16 yIIGQ~~AKkaVAI---ALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~a-------PFiKVEATK 85 (444)
T COG1220 16 YIIGQDEAKKAVAI---ALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGA-------PFIKVEATK 85 (444)
T ss_pred HhcCcHHHHHHHHH---HHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCC-------CeEEEEeee
Confidence 37788888777643 334444455444443333 7889999999999999999999999999 999999986
Q ss_pred ccc-ccccCc-hHHHHHHHHHhh
Q 021192 286 LVG-EFVGHT-GPKTRRRVGHLL 306 (316)
Q Consensus 286 ~~~-~~~g~~-~~~~~~~~~~a~ 306 (316)
+.. .|+|.. ++.+|.+.+.|.
T Consensus 86 fTEVGYVGrDVesivRDLve~av 108 (444)
T COG1220 86 FTEVGYVGRDVESIIRDLVEIAV 108 (444)
T ss_pred eeecccccccHHHHHHHHHHHHH
Confidence 643 478876 677888887764
No 183
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.31 E-value=3.1e-06 Score=80.27 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=43.9
Q ss_pred hhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccc
Q 021192 208 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (316)
Q Consensus 208 i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~ 286 (316)
++|++...+.+.+.+. +...|+.....+..+++|+||||+|||.+|+++|+.+.. +++.++.++.
T Consensus 460 ViGQ~~ai~~l~~~i~-------~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-------~~i~id~se~ 524 (758)
T PRK11034 460 VFGQDKAIEALTEAIK-------MSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-------ELLRFDMSEY 524 (758)
T ss_pred EeCcHHHHHHHHHHHH-------HHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-------CcEEeechhh
Confidence 4555555555544332 223344444445567999999999999999999999965 7777776553
No 184
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=5.6e-06 Score=75.35 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=41.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|.+.+.+.+...+.. ...+..++|+||||+|||++|+++|+.+..
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~---------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQ---------------QYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh---------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4678899999999888775541 123344799999999999999999999976
No 185
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=6.5e-06 Score=74.12 Aligned_cols=52 Identities=35% Similarity=0.419 Sum_probs=39.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|++.+...++..+. ....+..++|+||||+|||++|+++|+.+..
T Consensus 11 ~~~~divGq~~i~~~L~~~i~---------------~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALK---------------KNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHH---------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 356778888888777665433 1123455899999999999999999998865
No 186
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.28 E-value=6.4e-06 Score=70.55 Aligned_cols=91 Identities=19% Similarity=0.222 Sum_probs=66.9
Q ss_pred hhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc---
Q 021192 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR--- 283 (316)
Q Consensus 207 ~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~--- 283 (316)
+++|+++.++.+.++..... .+.. ....-++|.||||+|||++|++|++.+...--.+.|+++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a-------~g~~---~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA-------QGLE---ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH-------hcCC---CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 57777777666655433221 2221 2334578999999999999999999998866667779999988
Q ss_pred -cccccccccCchHHHHHHHHHhhc
Q 021192 284 -TDLVGEFVGHTGPKTRRRVGHLLS 307 (316)
Q Consensus 284 -~~~~~~~~g~~~~~~~~~~~~a~~ 307 (316)
+.+....++=-.+..|..|.+..+
T Consensus 122 ~sp~~e~Pl~l~p~~~r~~~~~~~~ 146 (361)
T smart00763 122 ESPMHEDPLHLFPDELREDLEDEYG 146 (361)
T ss_pred CCCCccCCcccCCHHHHHHHHHHhC
Confidence 777777777778888998877753
No 187
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=6.4e-06 Score=75.69 Aligned_cols=52 Identities=29% Similarity=0.429 Sum_probs=41.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|.+.+.+.+..++. ....+..++|+||||+|||++||++|+.+..
T Consensus 12 ktFddVIGQe~vv~~L~~aI~---------------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALE---------------RGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHH---------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467889999999888877554 1133456799999999999999999999865
No 188
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=7.6e-06 Score=73.54 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=56.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhc-CC---------
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV-GI--------- 272 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~-g~--------- 272 (316)
..+++++|++.+.+.++.... ....+.+++|+||||+|||++|+++|+.+... |.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~---------------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFT---------------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHH---------------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 467888999888887765433 12355679999999999999999999987542 11
Q ss_pred -------CCCCCeeeecccccccccccCchHHHHHHHHHhh
Q 021192 273 -------LPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLL 306 (316)
Q Consensus 273 -------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~ 306 (316)
-....++++++++- .+-..+|++++.+.
T Consensus 75 ~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~ 109 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSC 109 (491)
T ss_pred HHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHH
Confidence 12234566666532 23456888888774
No 189
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.24 E-value=1.7e-06 Score=81.44 Aligned_cols=131 Identities=24% Similarity=0.258 Sum_probs=99.2
Q ss_pred cccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHh-cCCCccccccC
Q 021192 39 LLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANN 117 (316)
Q Consensus 39 ~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~-~g~~~~~~~~~ 117 (316)
.........|+|.||.++..++...++.+++- .+......|.+|...+|. |..++.+..-+|+. .|..++.+|..
T Consensus 565 ~~~~~~~~r~~lllhL~a~~lyawLie~~~e~---~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~ 640 (975)
T KOG0520|consen 565 NLSSSVNFRDMLLLHLLAELLYAWLIEKVIEW---AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRN 640 (975)
T ss_pred hccccCCCcchHHHHHHHHHhHHHHHHHHhcc---cccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCC
Confidence 33333444489999999999999999999982 255566677778888888 55666777666654 68999999999
Q ss_pred CCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCC------CCCCCCCccccccCCCChHHHHHHHHHh
Q 021192 118 GMTPLHLSVWYSIRSEDYATVKTLLEYNADCSA------KDNEGKTPLDHLSNGPGSAKLRELLLWH 178 (316)
Q Consensus 118 g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~------~~~~g~tpl~~~a~~~~~~~~~~lL~~~ 178 (316)
|+||||+|+ ..|+..++..|++.|++++. .+-.|.|+-.. +...++..+.-+|.+.
T Consensus 641 G~tpL~wAa----~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~l-a~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 641 GWTPLHWAA----FRGREKLVASLIELGADPGAVTDPSPETPGGKTAADL-ARANGHKGIAGYLSEK 702 (975)
T ss_pred CCcccchHh----hcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhh-hhcccccchHHHHhhh
Confidence 999999999 88999999999988876543 34457888844 4456667777777654
No 190
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.1e-05 Score=73.32 Aligned_cols=53 Identities=25% Similarity=0.296 Sum_probs=41.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
..+++++|++.+++.+..++.. ...+..++|+||||+|||++|+++++.+...
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~---------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQ---------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4577889999998888775541 1233345999999999999999999999753
No 191
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.22 E-value=4.8e-06 Score=78.61 Aligned_cols=60 Identities=23% Similarity=0.308 Sum_probs=41.1
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhh-----cCCcEEEec
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLL-----SEITCLTFI 315 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-----~~~~~~~f~ 315 (316)
...+++|+||||+|||++|+++++.... .++.+++.. .+.+.++++++.+. .+...||||
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~-------~f~~lna~~-------~~i~dir~~i~~a~~~l~~~~~~~IL~I 115 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHTRA-------HFSSLNAVL-------AGVKDLRAEVDRAKERLERHGKRTILFI 115 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcC-------cceeehhhh-------hhhHHHHHHHHHHHHHhhhcCCceEEEE
Confidence 4568999999999999999999998765 677776542 12234566665552 233456664
No 192
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.22 E-value=7.3e-06 Score=71.35 Aligned_cols=66 Identities=32% Similarity=0.455 Sum_probs=46.2
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
.++++++...+.+.+..+.. .....+++|+||||+|||++|+++++++...+ ...++..++.
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~----------------~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~--~~~~~~~i~~ 74 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVD----------------SPNLPHLLVQGPPGSGKTAAVRALARELYGDP--WENNFTEFNV 74 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHh----------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCcc--cccceEEech
Confidence 45667787777777766443 12334799999999999999999999987532 1224666776
Q ss_pred cccc
Q 021192 284 TDLV 287 (316)
Q Consensus 284 ~~~~ 287 (316)
+++.
T Consensus 75 ~~~~ 78 (337)
T PRK12402 75 ADFF 78 (337)
T ss_pred hhhh
Confidence 6543
No 193
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.21 E-value=1e-05 Score=77.27 Aligned_cols=99 Identities=13% Similarity=0.213 Sum_probs=68.9
Q ss_pred HHHHHHHhh-hhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCC
Q 021192 199 DELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (316)
Q Consensus 199 ~~~~~~l~~-i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~ 277 (316)
......++. ..|++.+|+.+.++....... .......++|+||||+|||++++.+++.+.. +
T Consensus 314 ~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~----------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~-------~ 376 (784)
T PRK10787 314 RQAQEILDTDHYGLERVKDRILEYLAVQSRV----------NKIKGPILCLVGPPGVGKTSLGQSIAKATGR-------K 376 (784)
T ss_pred HHHHHHhhhhccCHHHHHHHHHHHHHHHHhc----------ccCCCceEEEECCCCCCHHHHHHHHHHHhCC-------C
Confidence 344455555 788999999998766633211 1123446899999999999999999998877 6
Q ss_pred eeeeccccc------c---cccccCchHHHHHHHHHhhcCCcEEEe
Q 021192 278 VTEVQRTDL------V---GEFVGHTGPKTRRRVGHLLSEITCLTF 314 (316)
Q Consensus 278 ~~~~~~~~~------~---~~~~g~~~~~~~~~~~~a~~~~~~~~f 314 (316)
+++++...+ . ..|+|...-++.+.+..+....|+|++
T Consensus 377 ~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~vill 422 (784)
T PRK10787 377 YVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLL 422 (784)
T ss_pred EEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEE
Confidence 777764332 1 247777777787778777656676554
No 194
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.21 E-value=1.2e-05 Score=77.02 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=35.9
Q ss_pred HHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccc
Q 021192 232 KALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (316)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~ 286 (316)
...++.....+..+++|+||||+|||.+|+++|..+.. +++.++.++.
T Consensus 473 ~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~-------~~~~~d~se~ 520 (731)
T TIGR02639 473 SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV-------HLERFDMSEY 520 (731)
T ss_pred HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC-------CeEEEeCchh
Confidence 34455444344456899999999999999999999865 7777776554
No 195
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.19 E-value=1.4e-05 Score=64.48 Aligned_cols=87 Identities=21% Similarity=0.264 Sum_probs=61.9
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
.++++++.+..++.+.+=... -- ...+..+++++|+.|||||++++++..++...|. .+++|..
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~-------Fl-----~G~pannvLL~G~rGtGKSSlVkall~~y~~~GL----RlIev~k 88 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQ-------FL-----QGLPANNVLLWGARGTGKSSLVKALLNEYADQGL----RLIEVSK 88 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHH-------HH-----cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCc----eEEEECH
Confidence 456677777777766542211 11 1246778999999999999999999999999885 7899988
Q ss_pred cccccccccCchHHHHHHHHHhh-cCCcEEEec
Q 021192 284 TDLVGEFVGHTGPKTRRRVGHLL-SEITCLTFI 315 (316)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~-~~~~~~~f~ 315 (316)
.++.. +-++++..+ ....+|||+
T Consensus 89 ~~L~~---------l~~l~~~l~~~~~kFIlf~ 112 (249)
T PF05673_consen 89 EDLGD---------LPELLDLLRDRPYKFILFC 112 (249)
T ss_pred HHhcc---------HHHHHHHHhcCCCCEEEEe
Confidence 77643 344555544 346888885
No 196
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=1.6e-05 Score=72.10 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=41.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
..+++++|++.+...+..... ....+..++|+||||+|||++||++|+.+...
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~---------------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTIL---------------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHH---------------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 456778888888877765332 12346689999999999999999999999763
No 197
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=1.4e-05 Score=73.46 Aligned_cols=52 Identities=27% Similarity=0.404 Sum_probs=41.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|++.+++.+++.+.. .+.+..++|+||+|+|||++|+++++.+..
T Consensus 13 qtFddVIGQe~vv~~L~~al~~---------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQ---------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHh---------------CCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4678899999999888775541 123334699999999999999999999975
No 198
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.16 E-value=4.3e-06 Score=71.11 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=54.0
Q ss_pred hhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccc
Q 021192 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (316)
Q Consensus 206 ~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~ 285 (316)
+.++|+....+..--++..+...+ -..+.++|.||||||||.+|-++|+++... -||..+++++
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K-----------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~-----~PF~~isgSE 87 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGK-----------IAGRAILIAGPPGTGKTALAMAIAKELGED-----VPFVSISGSE 87 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT-------------TT-EEEEEE-TTSSHHHHHHHHHHHCTTT-----S-EEEEEGGG
T ss_pred ccccChHHHHHHHHHHHHHHhccc-----------ccCcEEEEeCCCCCCchHHHHHHHHHhCCC-----CCeeEcccce
Confidence 467777777776654444332211 134679999999999999999999999842 2999999999
Q ss_pred cccccccCchHHHHHHHHHh
Q 021192 286 LVGEFVGHTGPKTRRRVGHL 305 (316)
Q Consensus 286 ~~~~~~g~~~~~~~~~~~~a 305 (316)
+.+.-+..+|. +.+.|+.|
T Consensus 88 iyS~e~kKTE~-L~qa~Rra 106 (398)
T PF06068_consen 88 IYSSEVKKTEA-LTQAFRRA 106 (398)
T ss_dssp G-BTTC-HHHH-HHHHHHCS
T ss_pred eeecccCchHH-HHHHHHHh
Confidence 98876666553 45555555
No 199
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.16 E-value=3.8e-06 Score=66.43 Aligned_cols=66 Identities=32% Similarity=0.344 Sum_probs=49.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..+.+++|.++..+.+..+.. ....+++++.||||+|||+.+.++|+++-. -.-++.+.|.+
T Consensus 24 ~~l~dIVGNe~tv~rl~via~----------------~gnmP~liisGpPG~GKTTsi~~LAr~LLG--~~~ke~vLELN 85 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAK----------------EGNMPNLIISGPPGTGKTTSILCLARELLG--DSYKEAVLELN 85 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHH----------------cCCCCceEeeCCCCCchhhHHHHHHHHHhC--hhhhhHhhhcc
Confidence 456788999888888766544 346678999999999999999999998854 22334667777
Q ss_pred cccc
Q 021192 283 RTDL 286 (316)
Q Consensus 283 ~~~~ 286 (316)
++|-
T Consensus 86 ASde 89 (333)
T KOG0991|consen 86 ASDE 89 (333)
T ss_pred Cccc
Confidence 7653
No 200
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=1.8e-05 Score=73.81 Aligned_cols=52 Identities=27% Similarity=0.448 Sum_probs=40.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|++.+.+.++..+. ..+.+..++|+||+|+|||++++++++.+..
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~---------------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALD---------------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHh---------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467889999999888877543 1123344689999999999999999999875
No 201
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.13 E-value=1.2e-05 Score=67.09 Aligned_cols=45 Identities=33% Similarity=0.411 Sum_probs=35.1
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec------ccccccccccCc
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ------RTDLVGEFVGHT 294 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~------~~~~~~~~~g~~ 294 (316)
..++++.||||||||++|+++++.+.. +++.++ .+++++.|.|..
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~-------~~~~i~~~~~~~~~dllg~~~~~~ 71 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDR-------PVMLINGDAELTTSDLVGSYAGYT 71 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCC-------CEEEEeCCccCCHHHHhhhhcccc
Confidence 356899999999999999999997765 777664 356777766544
No 202
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=2.5e-05 Score=68.49 Aligned_cols=52 Identities=23% Similarity=0.329 Sum_probs=39.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|++.+.+.+...+. ....+..++|+||||+|||++|+++++.+..
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~---------------~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLS---------------LGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CchhhccChHHHHHHHHHHHH---------------cCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 457788999988888766443 0123344689999999999999999999864
No 203
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.08 E-value=5.4e-06 Score=76.56 Aligned_cols=119 Identities=22% Similarity=0.235 Sum_probs=93.4
Q ss_pred cHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhh
Q 021192 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 129 (316)
Q Consensus 50 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~ 129 (316)
--.-.|++.|+...|+..++.......++|.+|.-|+++|+.|..+.+.+++++|++.+..+ .-+|.+|+
T Consensus 27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI--- 96 (822)
T KOG3609|consen 27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAI--- 96 (822)
T ss_pred HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHH---
Confidence 34567999999999999998655456789999999999999999999999999999987665 34788888
Q ss_pred hccCcHHHHHHHHhcCCCC----------CCCCCCCCCccccccCCCChHHHHHHHHHhHH
Q 021192 130 IRSEDYATVKTLLEYNADC----------SAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180 (316)
Q Consensus 130 ~~~~~~~~~~~Ll~~ga~~----------~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~ 180 (316)
..+..++|++++.+.... ...-..+.||+ +.|+..++-+++++|+..+.
T Consensus 97 -~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPl-iLAAh~NnyEil~~Ll~kg~ 155 (822)
T KOG3609|consen 97 -AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPL-MLAAHLNNFEILQCLLTRGH 155 (822)
T ss_pred -HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHH-HHHHHhcchHHHHHHHHcCC
Confidence 789999999999774332 22334578999 55555666777777776654
No 204
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=3e-05 Score=71.96 Aligned_cols=53 Identities=26% Similarity=0.378 Sum_probs=42.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
..+++++|.+.+.+.++..+.. ...+..++|+||+|+|||++|+++++.+...
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~---------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDE---------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 4678899999999888775441 1344567999999999999999999998753
No 205
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.06 E-value=1.1e-05 Score=67.93 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=46.8
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLL 306 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~ 306 (316)
..+.+++.||||||||.+|-.+|+++..-- ||..++++++.+--+..+|. +.+.|..|.
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dv-----PF~~isgsEiYS~E~kKTE~-L~qa~RraI 122 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIARELGEDV-----PFVAISGSEIYSLEVKKTEA-LTQALRRAI 122 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHhCCCC-----CceeeccceeeeecccHHHH-HHHHHHHhh
Confidence 456799999999999999999999998421 99999999998876666665 344555553
No 206
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.04 E-value=2.3e-05 Score=59.07 Aligned_cols=44 Identities=32% Similarity=0.569 Sum_probs=32.6
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 289 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~ 289 (316)
...+++++||||+|||++++.+++.+.. ...+++.++..+....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~----~~~~v~~~~~~~~~~~ 61 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFR----PGAPFLYLNASDLLEG 61 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhc----CCCCeEEEehhhhhhh
Confidence 4567999999999999999999998842 1226666666554433
No 207
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=2.4e-05 Score=74.30 Aligned_cols=52 Identities=27% Similarity=0.384 Sum_probs=40.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCc-eeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~-~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
..+++++|.+.+.+.++..+. .....| ++|+||||+|||++||++++.+...
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~----------------~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALT----------------QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHH----------------hCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 457888999998888776543 123344 5899999999999999999999763
No 208
>PRK08118 topology modulation protein; Reviewed
Probab=98.02 E-value=1.8e-05 Score=61.30 Aligned_cols=25 Identities=36% Similarity=0.704 Sum_probs=23.1
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++.||||+||||+|+.|++.+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5788999999999999999999876
No 209
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.00 E-value=4.4e-05 Score=74.00 Aligned_cols=50 Identities=24% Similarity=0.410 Sum_probs=35.2
Q ss_pred HcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccc
Q 021192 233 ALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (316)
Q Consensus 233 ~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~ 286 (316)
..++.....+...++|+||||+|||++|+++|+.+...+ .+++.++.++.
T Consensus 529 ~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~----~~~~~~d~s~~ 578 (821)
T CHL00095 529 RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE----DAMIRLDMSEY 578 (821)
T ss_pred hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc----cceEEEEchhc
Confidence 344443444445689999999999999999999986522 25666665543
No 210
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=4.6e-05 Score=70.41 Aligned_cols=52 Identities=25% Similarity=0.409 Sum_probs=41.3
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|.+.+.+.++..+.. ...+..++|+||+|+|||++|+.+|+.+..
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~---------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQ---------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4678899999988888775441 123455799999999999999999999865
No 211
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=5.6e-05 Score=70.22 Aligned_cols=53 Identities=26% Similarity=0.347 Sum_probs=40.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
..+++++|.+.+.+.+...+.. ...+..++|+||+|+|||++||++++.+...
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~---------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL---------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4678899999988887764441 1223335899999999999999999999873
No 212
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=4.7e-05 Score=67.09 Aligned_cols=53 Identities=26% Similarity=0.387 Sum_probs=41.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
..+++++|.+...+.+...+.. ...+.+++|+||||+|||++|+++++.+...
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~---------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~ 66 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIEN---------------NHLAQALLFCGPRGVGKTTCARILARKINQP 66 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4567788888887777664431 2345689999999999999999999988763
No 213
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.99 E-value=2.7e-05 Score=67.16 Aligned_cols=61 Identities=26% Similarity=0.268 Sum_probs=42.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..++++++.+.+.+.+..++. ....+..++++||||+|||++++++++.... .+..++
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-------~~~~i~ 75 (316)
T PHA02544 18 STIDECILPAADKETFKSIVK---------------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-------EVLFVN 75 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHh---------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-------cceEec
Confidence 356777888888777766543 1123334555899999999999999998754 566666
Q ss_pred ccc
Q 021192 283 RTD 285 (316)
Q Consensus 283 ~~~ 285 (316)
.++
T Consensus 76 ~~~ 78 (316)
T PHA02544 76 GSD 78 (316)
T ss_pred cCc
Confidence 554
No 214
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.98 E-value=1.1e-05 Score=75.17 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=65.2
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCee
Q 021192 200 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (316)
Q Consensus 200 ~~~~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~ 279 (316)
.....++++++.++..+.+...+. ...+++|+||||+|||++++++++.+...... ..++
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~------------------~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~--~~~~ 71 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAK------------------QKRNVLLIGEPGVGKSMLAKAMAELLPDEELE--DILV 71 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHH------------------cCCCEEEECCCCCCHHHHHHHHHHHcCchhhe--eEEE
Confidence 334567778888888877665443 22489999999999999999999988763211 0112
Q ss_pred eecc-----cccccccccCchHHHHHHHHHhhcCCcE
Q 021192 280 EVQR-----TDLVGEFVGHTGPKTRRRVGHLLSEITC 311 (316)
Q Consensus 280 ~~~~-----~~~~~~~~g~~~~~~~~~~~~a~~~~~~ 311 (316)
-.+. .-+..-+.|.+++.++..|..|+...|+
T Consensus 72 ~~n~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 108 (608)
T TIGR00764 72 YPNPEDPNMPRIVEVPAGEGREIVEDYKKKAFKQPSS 108 (608)
T ss_pred EeCCCCCchHHHHHHHHhhchHHHHHHHHHhhcccch
Confidence 2222 2244556899999999999999998776
No 215
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=7.4e-05 Score=68.54 Aligned_cols=52 Identities=31% Similarity=0.408 Sum_probs=40.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|.+.+.+.+...+.. ...+..++|+||||+|||++|+++++.+..
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~---------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ---------------QRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc---------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4678889999888887765441 123334689999999999999999999865
No 216
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=1.1e-05 Score=73.92 Aligned_cols=67 Identities=24% Similarity=0.417 Sum_probs=60.8
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.++.+++++||||+|||.++++++.. .. .+..++...+.++|.|+++.+++++|+.|...+|+++|+
T Consensus 16 ~~~~~v~~~g~~~~~~t~~~~~~a~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 16 EPPKGVLLHGPPGTGKTLLARALANE-GA-------EFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred CCCCCceeeCCCCCchhHHHHHHHhc-cC-------cccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 57889999999999999999999998 22 337888899999999999999999999999999999886
No 217
>PRK07261 topology modulation protein; Provisional
Probab=97.94 E-value=3.2e-05 Score=60.17 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=22.1
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++.|+||+||||+|+.++..+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~ 26 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNC 26 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999988754
No 218
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=3.6e-05 Score=67.72 Aligned_cols=61 Identities=23% Similarity=0.377 Sum_probs=43.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|++.+++.+++.+..-.. .. .......+..++|+||||+|||++|+++|+.+..
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~-----~~-~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARA-----DV-AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccc-----cc-cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3567889999999998886552110 00 0112234667999999999999999999998765
No 219
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.4e-05 Score=70.68 Aligned_cols=90 Identities=18% Similarity=0.364 Sum_probs=67.6
Q ss_pred hhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc----
Q 021192 208 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR---- 283 (316)
Q Consensus 208 i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~---- 283 (316)
=.|++.+|+.+.++.+ ..++.... ..+=+.|.||||.|||+|++.||+.+.. .|++++-
T Consensus 325 HYGLekVKeRIlEyLA---V~~l~~~~-------kGpILcLVGPPGVGKTSLgkSIA~al~R-------kfvR~sLGGvr 387 (782)
T COG0466 325 HYGLEKVKERILEYLA---VQKLTKKL-------KGPILCLVGPPGVGKTSLGKSIAKALGR-------KFVRISLGGVR 387 (782)
T ss_pred ccCchhHHHHHHHHHH---HHHHhccC-------CCcEEEEECCCCCCchhHHHHHHHHhCC-------CEEEEecCccc
Confidence 3788899998888655 33333221 1234678899999999999999999999 8999885
Q ss_pred --cccccc---cccCchHHHHHHHHHhhcCCcEEEe
Q 021192 284 --TDLVGE---FVGHTGPKTRRRVGHLLSEITCLTF 314 (316)
Q Consensus 284 --~~~~~~---~~g~~~~~~~~~~~~a~~~~~~~~f 314 (316)
+++-|- |+|.-.=++-+-+..|.-..|+++.
T Consensus 388 DEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LL 423 (782)
T COG0466 388 DEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLL 423 (782)
T ss_pred cHHHhccccccccccCChHHHHHHHHhCCcCCeEEe
Confidence 333332 8898888888888899888887763
No 220
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.92 E-value=1.1e-05 Score=63.59 Aligned_cols=47 Identities=47% Similarity=0.581 Sum_probs=34.4
Q ss_pred HhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 205 l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+.+++|++..|..+.-... -..+++++||||+|||++|+.+...+..
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------------G~h~lLl~GppGtGKTmlA~~l~~lLP~ 48 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------------GGHHLLLIGPPGTGKTMLARRLPSLLPP 48 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------------CC--EEEES-CCCTHHHHHHHHHHCS--
T ss_pred hhhhcCcHHHHHHHHHHHc------------------CCCCeEEECCCCCCHHHHHHHHHHhCCC
Confidence 5678888888888765333 2358999999999999999999887765
No 221
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.92 E-value=8.3e-05 Score=65.70 Aligned_cols=73 Identities=21% Similarity=0.197 Sum_probs=42.8
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc----cccccccccC--ch----HHHHHHHHHhhc--CCc
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR----TDLVGEFVGH--TG----PKTRRRVGHLLS--EIT 310 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~----~~~~~~~~g~--~~----~~~~~~~~~a~~--~~~ 310 (316)
..+++|+||||||||++|+.++..+........-.++.+.. .++++.+.-. +- -...+++..|.. ..|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 45799999999999999999999886421110111233332 3444443111 11 123556667764 357
Q ss_pred EEEec
Q 021192 311 CLTFI 315 (316)
Q Consensus 311 ~~~f~ 315 (316)
+|+||
T Consensus 274 ~vliI 278 (459)
T PRK11331 274 YVFII 278 (459)
T ss_pred cEEEE
Confidence 88876
No 222
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.90 E-value=2e-05 Score=72.20 Aligned_cols=60 Identities=25% Similarity=0.486 Sum_probs=47.3
Q ss_pred CccCCCCCCce-eeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhhcC
Q 021192 236 LKVGARRPPHM-AFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSE 308 (316)
Q Consensus 236 ~~~~~~~~~~~-l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~ 308 (316)
.....+++..+ +++||||-||||||+++|+..+- .+++++++|- .++..+++.++.|..+
T Consensus 318 ~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaGY-------sVvEINASDe------Rt~~~v~~kI~~avq~ 378 (877)
T KOG1969|consen 318 LDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGY-------SVVEINASDE------RTAPMVKEKIENAVQN 378 (877)
T ss_pred cCccCCCccceEEeecCCCCChhHHHHHHHHhcCc-------eEEEeccccc------ccHHHHHHHHHHHHhh
Confidence 33334455554 67899999999999999999887 8999999874 5678888888888554
No 223
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=7.2e-05 Score=69.30 Aligned_cols=52 Identities=31% Similarity=0.401 Sum_probs=40.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|.+.+.+.+..++.. ...+..++|+||+|+|||++|+++|+.+..
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~---------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQ---------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4578889988888888775441 123344699999999999999999999975
No 224
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.90 E-value=8.1e-05 Score=72.08 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=33.6
Q ss_pred cCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccc
Q 021192 234 LGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (316)
Q Consensus 234 ~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~ 285 (316)
.|+.....+...++|.||||+|||.+|+++|..+... ...++.++-++
T Consensus 587 ~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~----~~~~~~~dmse 634 (852)
T TIGR03345 587 AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG----EQNLITINMSE 634 (852)
T ss_pred cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC----CcceEEEeHHH
Confidence 3444333333458999999999999999999998642 12566666544
No 225
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=8.7e-05 Score=69.23 Aligned_cols=52 Identities=33% Similarity=0.475 Sum_probs=41.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|.+.+...+..++.. .....+++|+||||+|||++|+++|+.+..
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~---------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALIS---------------NRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHc---------------CCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 4577888888888887765541 123457899999999999999999999976
No 226
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.89 E-value=9.5e-05 Score=63.81 Aligned_cols=50 Identities=44% Similarity=0.705 Sum_probs=37.4
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.++++++...+.+.+..++. .....+++|+||||+|||++++++++.+..
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~----------------~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVK----------------EKNMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHh----------------CCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45667777777777665432 123346899999999999999999998854
No 227
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=7.5e-05 Score=69.20 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=42.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
..+++++|.+.+++.+...+. ....+..++|+||+|+|||++|+++|+.+...
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~---------------~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFE---------------TGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHH---------------cCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 467889999988888877544 12345679999999999999999999998753
No 228
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=2.4e-05 Score=69.44 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=40.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|++.+++.++..+. ....+..++|+||||+|||++|+++|+.+..
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~---------------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLR---------------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred CcHhhccChHHHHHHHHHHHH---------------hCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 356788898888887766444 1134455899999999999999999999976
No 229
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=7.6e-05 Score=70.02 Aligned_cols=61 Identities=25% Similarity=0.333 Sum_probs=47.4
Q ss_pred HHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccc
Q 021192 225 MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 289 (316)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~ 289 (316)
+....++...|+.....+..+++|.||.|.|||.+|++||..++.. ...+++++=|+...+
T Consensus 503 vs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~----e~aliR~DMSEy~Ek 563 (786)
T COG0542 503 VSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD----EQALIRIDMSEYMEK 563 (786)
T ss_pred HHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC----CccceeechHHHHHH
Confidence 3444556778888888888899999999999999999999999952 126777776665443
No 230
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00011 Score=68.12 Aligned_cols=52 Identities=29% Similarity=0.423 Sum_probs=41.3
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|.+.+.+.+...+.. ...+..++|+||+|+|||++|+++++.+..
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~---------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT---------------GRVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 4678899999998888775441 123445799999999999999999999875
No 231
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=2.3e-05 Score=71.54 Aligned_cols=71 Identities=18% Similarity=0.125 Sum_probs=58.5
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.+.+++++||+|+|||.|++++..++...-+. .+..++.+.+-++-..+.-+.++.+|.+|...+|.||.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~---hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvL 500 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIA---HVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVL 500 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccce---EEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEE
Confidence 45678999999999999999999998842222 566677777777767777888999999999999999864
No 232
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00015 Score=68.07 Aligned_cols=52 Identities=31% Similarity=0.443 Sum_probs=40.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|++.+.+.++..+.. ...+..++|+||||+|||++||++|+.+..
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~---------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKS---------------NKISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4578888998888887765441 124455799999999999999999999876
No 233
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=8.5e-05 Score=68.51 Aligned_cols=52 Identities=31% Similarity=0.506 Sum_probs=41.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|.+.+++.+...+.. ...+..++|+||||+|||++|+++|+.+..
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~---------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQE---------------NRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 4567888988888887775541 134567899999999999999999999975
No 234
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.81 E-value=0.00018 Score=63.13 Aligned_cols=52 Identities=29% Similarity=0.464 Sum_probs=40.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|.+..++.+.+.+.. ...+..++|+||||+|||++|+++++.+..
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~---------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN---------------GRIAHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567788888888877764431 124456899999999999999999999864
No 235
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.80 E-value=1.6e-05 Score=62.16 Aligned_cols=68 Identities=22% Similarity=0.318 Sum_probs=42.6
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccC-chHHHHHHHHHhhcCCcEEEe
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRRRVGHLLSEITCLTF 314 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~a~~~~~~~~f 314 (316)
...+++|+||||+|||.+|.++++++...|. .+.-+...+++..+-.. ......+.++.. ..++++|+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~----~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l-~~~dlLil 114 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGY----SVLFITASDLLDELKQSRSDGSYEELLKRL-KRVDLLIL 114 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT------EEEEEHHHHHHHHHCCHCCTTHCHHHHHH-HTSSCEEE
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCc----ceeEeecCceeccccccccccchhhhcCcc-ccccEecc
Confidence 4568999999999999999999999988665 45566666776664221 112233444443 34555553
No 236
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0001 Score=67.63 Aligned_cols=90 Identities=20% Similarity=0.370 Sum_probs=65.5
Q ss_pred hhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc----
Q 021192 208 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR---- 283 (316)
Q Consensus 208 i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~---- 283 (316)
=.|+.++|+.+.++++ ..+.+.. -...-+-|+||||.|||+++|.||+.+.. .|++++-
T Consensus 413 HYgm~dVKeRILEfiA---V~kLrgs-------~qGkIlCf~GPPGVGKTSI~kSIA~ALnR-------kFfRfSvGG~t 475 (906)
T KOG2004|consen 413 HYGMEDVKERILEFIA---VGKLRGS-------VQGKILCFVGPPGVGKTSIAKSIARALNR-------KFFRFSVGGMT 475 (906)
T ss_pred ccchHHHHHHHHHHHH---HHhhccc-------CCCcEEEEeCCCCCCcccHHHHHHHHhCC-------ceEEEeccccc
Confidence 4778888888877554 3333321 12234668999999999999999999999 8888874
Q ss_pred --ccccc---ccccCchHHHHHHHHHhhcCCcEEEe
Q 021192 284 --TDLVG---EFVGHTGPKTRRRVGHLLSEITCLTF 314 (316)
Q Consensus 284 --~~~~~---~~~g~~~~~~~~~~~~a~~~~~~~~f 314 (316)
+++-| -|+|--.=++-+-+....-.-|.+++
T Consensus 476 DvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLi 511 (906)
T KOG2004|consen 476 DVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILI 511 (906)
T ss_pred cHHhhcccceeeeccCChHHHHHHHhhCCCCceEEe
Confidence 33333 28888887887777777777787775
No 237
>PRK08181 transposase; Validated
Probab=97.78 E-value=3.3e-05 Score=64.30 Aligned_cols=44 Identities=34% Similarity=0.516 Sum_probs=33.2
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccccccc
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF 290 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~ 290 (316)
..+++|+||||+|||.|+.+++..+...|. .++-++..+++..+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~----~v~f~~~~~L~~~l 149 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGW----RVLFTRTTDLVQKL 149 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCC----ceeeeeHHHHHHHH
Confidence 457999999999999999999998877553 34444555555544
No 238
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00011 Score=70.55 Aligned_cols=52 Identities=29% Similarity=0.378 Sum_probs=40.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|.+.+++.|+..+.. ...+..++|+||+|+|||++|++|++.+..
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~---------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDS---------------GRINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh---------------CCCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 4578889999888887775441 123334799999999999999999999975
No 239
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=4.7e-05 Score=65.75 Aligned_cols=59 Identities=24% Similarity=0.387 Sum_probs=51.0
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccc-cccccCc-hHHHHHHHHHhhcC
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV-GEFVGHT-GPKTRRRVGHLLSE 308 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~a~~~ 308 (316)
-.++++.||.|+|||.||..||+.+.. ||.-+++..+. ..|+|+. |.-+.+++..|..+
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldV-------PfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~n 286 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDV-------PFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYN 286 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCC-------CeEEecccchhhcccccccHHHHHHHHHHHccCC
Confidence 357899999999999999999999999 99999998775 4699998 66788888888654
No 240
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=4.5e-05 Score=70.28 Aligned_cols=51 Identities=35% Similarity=0.441 Sum_probs=40.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCc-eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~-~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|++.+.+.++..+. .....| ++|+||+|+|||++|+++|+.+..
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~----------------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALD----------------AGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHH----------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457888999988888877544 123444 699999999999999999999875
No 241
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00027 Score=65.28 Aligned_cols=52 Identities=23% Similarity=0.315 Sum_probs=41.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|++.+.+.+...+.. ...+..++|+||||+|||++|+++++.+..
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~---------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIES---------------NKIANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 4678899999988887765441 124456899999999999999999999875
No 242
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.70 E-value=0.00011 Score=57.38 Aligned_cols=28 Identities=29% Similarity=0.622 Sum_probs=25.1
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
++..+++.|+||+|||++|+.+++.+..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4567899999999999999999999865
No 243
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.69 E-value=2.7e-05 Score=56.31 Aligned_cols=32 Identities=38% Similarity=0.572 Sum_probs=22.4
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
|+++.|+||+|||++++++|+.+.. .|.+|+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~-------~f~RIq~ 32 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGL-------SFKRIQF 32 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT---------EEEEE-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCC-------ceeEEEe
Confidence 6899999999999999999999887 6666654
No 244
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.68 E-value=0.00021 Score=58.40 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=25.5
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+..++++||||+|||++|+++++....
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999998764
No 245
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.67 E-value=5.2e-05 Score=64.32 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=35.5
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccc--cccCc
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--FVGHT 294 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~--~~g~~ 294 (316)
..++++.||||+|||++++.+|..+.. +++.++....+.. ++|+.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~-------~~~rV~~~~~l~~~DliG~~ 110 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNW-------PCVRVNLDSHVSRIDLVGKD 110 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCC-------CeEEEEecCCCChhhcCCCc
Confidence 457999999999999999999999998 8888876443333 45543
No 246
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.67 E-value=0.00046 Score=67.35 Aligned_cols=49 Identities=29% Similarity=0.451 Sum_probs=35.2
Q ss_pred cCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccc
Q 021192 234 LGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (316)
Q Consensus 234 ~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~ 286 (316)
.++.....+...++|.||||+|||.+|++++..+...+ .+++.++.++.
T Consensus 586 ~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~----~~~i~~d~s~~ 634 (852)
T TIGR03346 586 AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE----DAMVRIDMSEY 634 (852)
T ss_pred ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC----CcEEEEechhh
Confidence 34433334556789999999999999999999886532 36777765543
No 247
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=7.2e-05 Score=68.35 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=39.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|.+.+.+.+...+.. ...+..++|+||||+|||++|+++|+.+..
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~---------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET---------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4577888988888877664430 123344789999999999999999998875
No 248
>PRK08116 hypothetical protein; Validated
Probab=97.67 E-value=9.6e-05 Score=61.82 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=34.0
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccccccc
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF 290 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~ 290 (316)
..+++|+|+||+|||.||.++++.+...|. +++-++..+++..+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~----~v~~~~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGV----PVIFVNFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCC----eEEEEEHHHHHHHH
Confidence 356999999999999999999999876442 56666666665543
No 249
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.67 E-value=4.3e-05 Score=57.31 Aligned_cols=32 Identities=41% Similarity=0.558 Sum_probs=26.5
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
+++++||||+|||++++.++..+.. ++..+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~-------~~~~i~~ 32 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGR-------PVIRINC 32 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTC-------EEEEEE-
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhc-------ceEEEEe
Confidence 4789999999999999999999965 6655554
No 250
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.67 E-value=7.4e-05 Score=61.31 Aligned_cols=43 Identities=28% Similarity=0.476 Sum_probs=34.5
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccccccc
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF 290 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~ 290 (316)
.+++|+|+||+|||.++.+++..+...|. .++-++..+++..+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~----~v~~it~~~l~~~l 142 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGK----SVLIITVADIMSAM 142 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCC----eEEEEEHHHHHHHH
Confidence 47999999999999999999999976543 56666677776644
No 251
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=8.6e-05 Score=68.99 Aligned_cols=52 Identities=19% Similarity=0.313 Sum_probs=41.3
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|++.+...++..+. ....+..++|+||||+|||++|+++|+.+..
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~---------------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLR---------------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHH---------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457888899888888776443 1134455899999999999999999999976
No 252
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.66 E-value=7.1e-05 Score=62.02 Aligned_cols=45 Identities=36% Similarity=0.589 Sum_probs=37.5
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccccccc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF 290 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~ 290 (316)
...+++|+||||+|||.||-+++.++...|+ .+.-+..++++.++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~----sv~f~~~~el~~~L 148 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGI----SVLFITAPDLLSKL 148 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCC----eEEEEEHHHHHHHH
Confidence 4567999999999999999999999997666 67777777777664
No 253
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=9.2e-05 Score=65.59 Aligned_cols=66 Identities=14% Similarity=0.219 Sum_probs=51.5
Q ss_pred CCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccc-ccccccccCch--HHHHHHHHHhhcCCcEEEe
Q 021192 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT-DLVGEFVGHTG--PKTRRRVGHLLSEITCLTF 314 (316)
Q Consensus 240 ~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~-~~~~~~~g~~~--~~~~~~~~~a~~~~~~~~f 314 (316)
..+...+++.||||+|||.||-.+|..... ||+++-.. ++++- .+++ .-++.+|+.|...-..||-
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~F-------PFvKiiSpe~miG~--sEsaKc~~i~k~F~DAYkS~lsiiv 603 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALSSDF-------PFVKIISPEDMIGL--SESAKCAHIKKIFEDAYKSPLSIIV 603 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhhcCC-------CeEEEeChHHccCc--cHHHHHHHHHHHHHHhhcCcceEEE
Confidence 345667899999999999999999988887 99987754 55554 3343 5589999999887776664
No 254
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00023 Score=59.20 Aligned_cols=57 Identities=21% Similarity=0.391 Sum_probs=47.8
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccccc-ccccCchHHH-HHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG-EFVGHTGPKT-RRRVGHL 305 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~-~~~~~~a 305 (316)
.-.++++.||.|+|||.||..+|+.+.. ||.-.++..+.. .|+|+.-.++ -++++.|
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~LnV-------PFaiADATtLTEAGYVGEDVENillkLlqaa 154 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKILNV-------PFAIADATTLTEAGYVGEDVENILLKLLQAA 154 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHhCC-------CeeeccccchhhccccchhHHHHHHHHHHHc
Confidence 4457899999999999999999999999 999999988754 6999997774 5555554
No 255
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.0001 Score=67.70 Aligned_cols=52 Identities=23% Similarity=0.347 Sum_probs=40.3
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|.+.+.+.+...+. ....+..++|+||||+|||++|+++|+.+..
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~---------------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAIL---------------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHH---------------cCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456788888888877766433 1134456899999999999999999999865
No 256
>PRK06526 transposase; Provisional
Probab=97.64 E-value=5.1e-05 Score=62.82 Aligned_cols=31 Identities=42% Similarity=0.541 Sum_probs=26.5
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~ 272 (316)
...+++++||||+|||.+|.+++..+...|.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~ 127 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGH 127 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCC
Confidence 4567999999999999999999998876553
No 257
>PRK09183 transposase/IS protein; Provisional
Probab=97.62 E-value=8.1e-05 Score=61.97 Aligned_cols=44 Identities=34% Similarity=0.458 Sum_probs=31.2
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 289 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~ 289 (316)
...+++++||||+|||+++.+++......|. .+.-++..+++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~----~v~~~~~~~l~~~ 144 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGI----KVRFTTAADLLLQ 144 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC----eEEEEeHHHHHHH
Confidence 3467999999999999999999888765442 3334444455433
No 258
>PHA02244 ATPase-like protein
Probab=97.60 E-value=0.00015 Score=62.49 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=29.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
....+++.||||||||++|++++..+.. +++.++.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~-------pfv~In~ 152 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDL-------DFYFMNA 152 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEec
Confidence 3456899999999999999999998776 7777763
No 259
>PRK06762 hypothetical protein; Provisional
Probab=97.59 E-value=0.00019 Score=55.54 Aligned_cols=25 Identities=36% Similarity=0.491 Sum_probs=22.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.-+++.|+||+||||+|+.+++.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578899999999999999999873
No 260
>PRK12377 putative replication protein; Provisional
Probab=97.59 E-value=0.00012 Score=60.23 Aligned_cols=42 Identities=33% Similarity=0.542 Sum_probs=32.8
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccc
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 289 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~ 289 (316)
.+++|+||||||||.||.++++.+...|. .+.-+...+++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~----~v~~i~~~~l~~~ 143 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGR----SVIVVTVPDVMSR 143 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC----CeEEEEHHHHHHH
Confidence 57999999999999999999999987554 3455555565554
No 261
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.57 E-value=6.7e-05 Score=54.74 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.8
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+++.|+||+||||+|+.|++.+..
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~ 25 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGF 25 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 578999999999999999998854
No 262
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.57 E-value=0.00062 Score=66.29 Aligned_cols=41 Identities=22% Similarity=0.475 Sum_probs=31.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~ 286 (316)
+...++|+||||+|||++|++|+..+... ..+++.++.+++
T Consensus 597 p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~----~~~~i~id~se~ 637 (857)
T PRK10865 597 PIGSFLFLGPTGVGKTELCKALANFMFDS----DDAMVRIDMSEF 637 (857)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhcC----CCcEEEEEhHHh
Confidence 33468999999999999999999988642 225676665543
No 263
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.54 E-value=0.00016 Score=65.11 Aligned_cols=52 Identities=31% Similarity=0.404 Sum_probs=41.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|.+.+...+...+.. ...+..++|+||||+|||++|+++|+.+..
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~---------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF---------------NRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4678899999888877765441 134456899999999999999999999865
No 264
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.52 E-value=0.00015 Score=61.85 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=32.6
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 289 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~ 289 (316)
...++.|+||||+|||.|+.++++++...|. .+.-+...+++..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~----~v~~~~~~~l~~~ 198 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGV----SSTLLHFPEFIRE 198 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCC----CEEEEEHHHHHHH
Confidence 4568999999999999999999999987554 3333444444444
No 265
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.52 E-value=0.00088 Score=58.65 Aligned_cols=71 Identities=23% Similarity=0.238 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCCcc------ccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHH
Q 021192 98 NEAAKLLLAHGAFIE------AKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKL 171 (316)
Q Consensus 98 ~~~~~~Ll~~g~~~~------~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~ 171 (316)
+..+++|.+++++.| ..+..-.|+||+|+ ..|..++|.+||+.|+||..+|..|.||...++ +.+|
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa----~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~----nkdV 475 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAA----AQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA----NKDV 475 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHH----hcchHHHHHHHHHhcCCchhcccCCCCcccccc----cHHH
Confidence 567888888877654 33445679999999 899999999999999999999999999995543 3455
Q ss_pred HHHHH
Q 021192 172 RELLL 176 (316)
Q Consensus 172 ~~lL~ 176 (316)
...+.
T Consensus 476 k~~F~ 480 (591)
T KOG2505|consen 476 KSIFI 480 (591)
T ss_pred HHHHH
Confidence 55444
No 266
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.51 E-value=0.0003 Score=57.88 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=45.2
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLL 306 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~ 306 (316)
..+.+++.||||||||.+|-++++++.... ||....++++.+.-+..++. +.+.|..|.
T Consensus 63 aGravLlaGppgtGKTAlAlaisqELG~kv-----PFcpmvgSEvyS~EvKKTEv-LmenfRRaI 121 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQELGPKV-----PFCPMVGSEVYSNEVKKTEV-LMENFRRAI 121 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHhCCCC-----CcccccchhhhhhhhhHHHH-HHHHHHHHh
Confidence 345799999999999999999999998622 88888888887776666654 345555553
No 267
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.50 E-value=8.6e-05 Score=56.74 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=28.8
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
.++.|.|++|+||||+.|++|+.+.. +|+..+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~-------~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNL-------PFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCC-------CcccchH
Confidence 45889999999999999999999998 7776664
No 268
>PRK13947 shikimate kinase; Provisional
Probab=97.50 E-value=0.00032 Score=54.58 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=23.3
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
++++.|+||+|||++++.+|..+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999999876
No 269
>PRK13948 shikimate kinase; Provisional
Probab=97.49 E-value=0.00035 Score=54.77 Aligned_cols=44 Identities=27% Similarity=0.441 Sum_probs=33.5
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccC
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH 293 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~ 293 (316)
.++..+++.|.+|+|||++++.+|+.+.. +++..+. ++.+..|.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~-------~~iD~D~--~ie~~~g~ 51 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALML-------HFIDTDR--YIERVTGK 51 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC-------CEEECCH--HHHHHHhC
Confidence 35678899999999999999999999877 7776552 34444443
No 270
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.0006 Score=58.96 Aligned_cols=59 Identities=25% Similarity=0.231 Sum_probs=40.5
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhhcCC-----------------CCCCCeeeecccccccccccCchHHHHHHHHHh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYMVGI-----------------LPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHL 305 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~~g~-----------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a 305 (316)
.++|+||||+|||++|.++|+.+..... -..+.++++++++.-..- -.-..+|++.+..
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~ 101 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFL 101 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHh
Confidence 4999999999999999999999984221 123478888887654431 2234455555544
No 271
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.48 E-value=0.0011 Score=53.20 Aligned_cols=70 Identities=27% Similarity=0.376 Sum_probs=51.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
-.+..++|.+..++.+.+= .++-..| .+..+++++|.-|||||++.+++-.++...|. ..++|.
T Consensus 57 i~L~~l~Gvd~qk~~L~~N-------T~~F~~G-----~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl----rLVEV~ 120 (287)
T COG2607 57 IDLADLVGVDRQKEALVRN-------TEQFAEG-----LPANNVLLWGARGTGKSSLVKALLNEYADEGL----RLVEVD 120 (287)
T ss_pred cCHHHHhCchHHHHHHHHH-------HHHHHcC-----CcccceEEecCCCCChHHHHHHHHHHHHhcCC----eEEEEc
Confidence 3456677777777766441 1122223 36678999999999999999999999998776 599999
Q ss_pred cccccc
Q 021192 283 RTDLVG 288 (316)
Q Consensus 283 ~~~~~~ 288 (316)
..|+..
T Consensus 121 k~dl~~ 126 (287)
T COG2607 121 KEDLAT 126 (287)
T ss_pred HHHHhh
Confidence 987744
No 272
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.48 E-value=0.00021 Score=61.34 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=34.7
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccccccc
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF 290 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~ 290 (316)
.+++|+||||+|||.|+.++|+++...|. .++-++..+++..+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~----~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGK----SVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCC----eEEEEEHHHHHHHH
Confidence 67999999999999999999999987553 55666666666654
No 273
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.48 E-value=0.00016 Score=56.17 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=34.0
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccccc
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG 288 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~ 288 (316)
...++|.||+|+|||.+|+++++.+.. -...+++.++.+++..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~---~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV---GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT----SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc---CCccchHHHhhhcccc
Confidence 346889999999999999999999993 1333788888776655
No 274
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.47 E-value=0.00022 Score=53.65 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.2
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+++.||||+|||++++.+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~ 25 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA 25 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Confidence 578999999999999999987763
No 275
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.46 E-value=0.00039 Score=64.05 Aligned_cols=66 Identities=24% Similarity=0.297 Sum_probs=45.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCC---CCCCCee
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVT 279 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~---~~~~~~~ 279 (316)
..++++++.+...+.++... ....+.+++|+||||||||++||++.+....... -...+|+
T Consensus 62 ~~f~~iiGqs~~i~~l~~al----------------~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi 125 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAAL----------------CGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFV 125 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHH----------------hCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEE
Confidence 34567788777766654311 1235678999999999999999999887643211 1235788
Q ss_pred eeccc
Q 021192 280 EVQRT 284 (316)
Q Consensus 280 ~~~~~ 284 (316)
+++.+
T Consensus 126 ~id~~ 130 (531)
T TIGR02902 126 EIDAT 130 (531)
T ss_pred EEccc
Confidence 88864
No 276
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.46 E-value=0.00024 Score=50.57 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=32.8
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh-cCCCCCCCeeeec-ccccccccccCc
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM-VGILPTDRVTEVQ-RTDLVGEFVGHT 294 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~-~g~~~~~~~~~~~-~~~~~~~~~g~~ 294 (316)
+.++||||+|||++++.|++.+.. .+....+.++... ..+....|.||.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~ 51 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQP 51 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCc
Confidence 358999999999999999988875 3333334555433 345555555553
No 277
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.00023 Score=66.40 Aligned_cols=52 Identities=29% Similarity=0.408 Sum_probs=40.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|++.+++.++..+.. ...+..++|+||||+|||++|+++++.+..
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~---------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAE---------------GRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh---------------CCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4578899999999888765441 123345699999999999999999999864
No 278
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00013 Score=64.23 Aligned_cols=49 Identities=33% Similarity=0.440 Sum_probs=39.1
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..++.++.|++..|+.+..... -..+++|+||||||||++|+.+...+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA------------------GgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA------------------GGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh------------------cCCcEEEecCCCCchHHhhhhhcccCC
Confidence 4478899999999988865433 456899999999999999988865544
No 279
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.43 E-value=0.00053 Score=56.09 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=24.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
....++++||||+|||++|+++++....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567999999999999999999998744
No 280
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.43 E-value=0.00053 Score=61.09 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=30.3
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
..+..++++||||+|||++++.+.+.+...+ +.-.++.+++
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~--~~~~~v~in~ 93 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIA--VKVVYVYINC 93 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEEC
Confidence 3556789999999999999999999886533 1114556654
No 281
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.43 E-value=0.00044 Score=52.72 Aligned_cols=24 Identities=38% Similarity=0.674 Sum_probs=22.2
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+++.|+||+|||++++.++..+..
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~ 25 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 678999999999999999999866
No 282
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.00066 Score=58.42 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=38.0
Q ss_pred HhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 205 l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+++++|.+.+++.+..... ....+..++|+||+|+|||++|+.+++.+..
T Consensus 3 ~~~i~g~~~~~~~l~~~~~---------------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSII---------------KNRFSHAHIIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred hhhccCcHHHHHHHHHHHH---------------cCCCCceEEeECCCCCCHHHHHHHHHHHHcC
Confidence 5677888888777766442 1234455689999999999999999998755
No 283
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.41 E-value=0.00043 Score=59.76 Aligned_cols=60 Identities=27% Similarity=0.375 Sum_probs=45.1
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCee
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~ 279 (316)
.+..++|+++++..+..... .+...++++.|++|||||+++|+++..+....++...+|.
T Consensus 15 pf~~ivGq~~~k~al~~~~~----------------~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~ 74 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVI----------------DPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN 74 (350)
T ss_pred CHHHHhChHHHHHHHHHhcc----------------CCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC
Confidence 46778898888887754211 1344579999999999999999999999876666555443
No 284
>PRK06921 hypothetical protein; Provisional
Probab=97.41 E-value=0.00033 Score=58.56 Aligned_cols=43 Identities=30% Similarity=0.424 Sum_probs=31.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhc-CCCCCCCeeeeccccccc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQRTDLVG 288 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~-g~~~~~~~~~~~~~~~~~ 288 (316)
....++|+||||+|||.|+.++++++... |. .++-++..+++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~----~v~y~~~~~l~~ 159 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGV----PVLYFPFVEGFG 159 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCc----eEEEEEHHHHHH
Confidence 34679999999999999999999988764 42 344444444443
No 285
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.41 E-value=0.00067 Score=63.22 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=36.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.++++++.....+.++.++... ........-++|+||||+|||++++++++.+..
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~-----------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQ-----------VLENAPKRILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhc-----------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4566666666666665544321 111122234889999999999999999998865
No 286
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.39 E-value=0.00045 Score=64.70 Aligned_cols=45 Identities=31% Similarity=0.386 Sum_probs=33.2
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCC---CCCCCeeeeccccc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTEVQRTDL 286 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~---~~~~~~~~~~~~~~ 286 (316)
.+.+++++||||||||++|+++.+....... ....+++.+++.++
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 4567999999999999999999887643211 12347888886543
No 287
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.39 E-value=0.00019 Score=64.92 Aligned_cols=46 Identities=24% Similarity=0.442 Sum_probs=33.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccc
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV 291 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~ 291 (316)
..++++||||+|||.|++++++++...+ +...++-++..+++..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~--~~~~v~yi~~~~~~~~~~ 194 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKN--PNAKVVYVTSEKFTNDFV 194 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHHH
Confidence 4588999999999999999999987531 112456666666555543
No 288
>PRK14532 adenylate kinase; Provisional
Probab=97.39 E-value=0.00017 Score=57.11 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.4
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
++++.||||+|||++++.||+.+..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~ 26 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGM 26 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4788999999999999999998765
No 289
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.00033 Score=63.62 Aligned_cols=52 Identities=31% Similarity=0.409 Sum_probs=39.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+.+++|++.+...+...+.. ...+..++|+||||+|||++|+++|+.+..
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~---------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKL---------------QRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3567788888888877665431 123344689999999999999999999864
No 290
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0011 Score=63.30 Aligned_cols=93 Identities=20% Similarity=0.392 Sum_probs=57.8
Q ss_pred hhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccc-
Q 021192 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD- 285 (316)
Q Consensus 207 ~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~- 285 (316)
.++++.+....+.+.+. +...|+.-. .+...++|.||.|+|||-+|+++|..++. ..+.++.++-++
T Consensus 563 ~V~gQ~eAv~aIa~AI~-------~sr~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fg----se~~~IriDmse~ 630 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIR-------RSRAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFG----SEENFIRLDMSEF 630 (898)
T ss_pred hccchHHHHHHHHHHHH-------hhhcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcC----CccceEEechhhh
Confidence 35555555555544322 223344333 57788999999999999999999999976 344777777652
Q ss_pred -----cccc---cccCchHHHHHHHHHhhcCCcE-EEe
Q 021192 286 -----LVGE---FVGHTGPKTRRRVGHLLSEITC-LTF 314 (316)
Q Consensus 286 -----~~~~---~~g~~~~~~~~~~~~a~~~~~~-~~f 314 (316)
+++. |+|+++-- -+.++....|. |||
T Consensus 631 ~evskligsp~gyvG~e~gg---~LteavrrrP~sVVL 665 (898)
T KOG1051|consen 631 QEVSKLIGSPPGYVGKEEGG---QLTEAVKRRPYSVVL 665 (898)
T ss_pred hhhhhccCCCcccccchhHH---HHHHHHhcCCceEEE
Confidence 3333 67776642 34444444444 444
No 291
>PRK00625 shikimate kinase; Provisional
Probab=97.34 E-value=0.00031 Score=54.60 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=26.8
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
.+++.|.||+|||++++.+|+.+.. +++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~-------~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL-------PFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-------CEEEhh
Confidence 4788999999999999999999876 666665
No 292
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.33 E-value=0.00041 Score=59.70 Aligned_cols=49 Identities=33% Similarity=0.372 Sum_probs=35.5
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.+..++|.+.+++.+.-..- .....|++|.|+||+|||++||+++..+.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~----------------~~~~~~vLl~G~pG~gKT~lar~la~llP 54 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAI----------------DPGIGGVLVFGDRGTGKSTAVRALAALLP 54 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHh----------------ccCCCcEEEEcCCCCCHHHHHHHHHHHCC
Confidence 35667787777776543110 01235799999999999999999999984
No 293
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.33 E-value=0.00042 Score=63.16 Aligned_cols=52 Identities=27% Similarity=0.371 Sum_probs=40.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|++.+.+.+...+. ....+..++|+||||+|||++|+++++.+..
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~---------------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALD---------------NNRLAHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHH---------------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 457889999988888776543 0123344689999999999999999999864
No 294
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.31 E-value=0.00035 Score=62.73 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=30.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccc
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 287 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~ 287 (316)
..++++||||+|||.|++++++.+...|. .++-++..++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~----~v~yi~~~~f~ 181 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGG----KILYVRSELFT 181 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCC----CEEEeeHHHHH
Confidence 45889999999999999999998875432 45555554443
No 295
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=97.31 E-value=0.00046 Score=35.44 Aligned_cols=22 Identities=45% Similarity=0.714 Sum_probs=10.9
Q ss_pred CCcHHHHHHhCCCHHHHHHHHc
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLE 69 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~ 69 (316)
|.||+|+|+..++.++++.|++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~ 23 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLD 23 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHH
Confidence 4445555544455555555444
No 296
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.30 E-value=0.00074 Score=61.40 Aligned_cols=63 Identities=24% Similarity=0.355 Sum_probs=42.5
Q ss_pred HhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 205 l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
+.+..|+.++++.+.++.... ..++. ....-+.|.||||+|||+|++.|++.+... +++.+.+
T Consensus 75 F~d~yGlee~ieriv~~l~~A-------a~gl~---~~~~IL~LvGPpG~GKSsLa~~la~~le~~------~~Y~~kg 137 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHA-------AQGLE---EKKQILYLLGPVGGGKSSLAERLKSLMERV------PIYVLKA 137 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHH-------HHhcC---CCCceEEEecCCCCCchHHHHHHHHHHHhC------cceeecC
Confidence 445778888888776644211 11221 133467789999999999999999998875 4555544
No 297
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.30 E-value=0.00039 Score=51.14 Aligned_cols=41 Identities=24% Similarity=0.241 Sum_probs=32.6
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
...+++.|+.|+|||+++|.+++.+...+.+.++.|.-++.
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf~lv~~ 62 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTFTLVNE 62 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCCeeeeee
Confidence 44578899999999999999999998766676666655543
No 298
>PRK06893 DNA replication initiation factor; Validated
Probab=97.30 E-value=0.00059 Score=55.83 Aligned_cols=26 Identities=15% Similarity=0.404 Sum_probs=23.2
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+.+.++||||+|||.|++++++++..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999998754
No 299
>PRK13949 shikimate kinase; Provisional
Probab=97.30 E-value=0.00032 Score=54.44 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=23.2
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++.|+||+|||++++.+++.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5889999999999999999999976
No 300
>PRK13946 shikimate kinase; Provisional
Probab=97.29 E-value=0.00066 Score=53.55 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=24.3
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+..+++.|.||+|||++++.+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 456889999999999999999999876
No 301
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.28 E-value=0.00023 Score=61.63 Aligned_cols=36 Identities=39% Similarity=0.569 Sum_probs=31.9
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~ 284 (316)
...++++-||||+|||.+|+.+|+.+.. ++++++..
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~-------~~~~i~~t 77 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGL-------PFVRIQCT 77 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCC-------CeEEEecC
Confidence 4567999999999999999999999997 88888864
No 302
>PRK03839 putative kinase; Provisional
Probab=97.27 E-value=0.00025 Score=55.72 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=22.6
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++.|+||+||||+++.+++.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3788999999999999999999875
No 303
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.26 E-value=0.0023 Score=56.37 Aligned_cols=29 Identities=34% Similarity=0.526 Sum_probs=24.8
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+..++++||||+|||++++.+.+.+..
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35567999999999999999999987753
No 304
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.26 E-value=0.0006 Score=62.17 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.3
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.-++++||||+|||+++++||+++..
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45778999999999999999999875
No 305
>PLN02200 adenylate kinase family protein
Probab=97.26 E-value=0.00054 Score=56.12 Aligned_cols=29 Identities=24% Similarity=0.364 Sum_probs=24.4
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+..+++.|+||+|||++++.+++.+..
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~ 69 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGF 69 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45566788999999999999999988754
No 306
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.26 E-value=0.00054 Score=51.26 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=27.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~ 284 (316)
....++++|+|||||+.+|+.+...... ...+++.++..
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~----~~~~~~~~~~~ 58 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGR----ANGPFIVIDCA 58 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTT----CCS-CCCCCHH
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCc----cCCCeEEechh
Confidence 5566999999999999999988876553 33355555543
No 307
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.25 E-value=0.00089 Score=50.86 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.2
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+++.|+||+|||++|+.+++.+..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~ 25 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGA 25 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCC
Confidence 578899999999999999998654
No 308
>PRK06217 hypothetical protein; Validated
Probab=97.25 E-value=0.001 Score=52.46 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.6
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++.|+||+|||++++.|++.+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4789999999999999999998864
No 309
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0013 Score=62.10 Aligned_cols=74 Identities=22% Similarity=0.400 Sum_probs=57.6
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCC----CCeeeecccccc--cccccCchHHHHHHHHHhhcCCcEEEe
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT----DRVTEVQRTDLV--GEFVGHTGPKTRRRVGHLLSEITCLTF 314 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~----~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~a~~~~~~~~f 314 (316)
.+..+-++.|.||.|||.++.-+|..... |-+|. ..++..+-..++ .+|-|+-|.+++.++++..+..++|+|
T Consensus 189 R~KNNPvLiGEpGVGKTAIvEGLA~rIv~-g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILF 267 (786)
T COG0542 189 RTKNNPVLVGEPGVGKTAIVEGLAQRIVN-GDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILF 267 (786)
T ss_pred cCCCCCeEecCCCCCHHHHHHHHHHHHhc-CCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEE
Confidence 34556788999999999999999988765 22222 345555544454 358999999999999999988899999
Q ss_pred c
Q 021192 315 I 315 (316)
Q Consensus 315 ~ 315 (316)
|
T Consensus 268 I 268 (786)
T COG0542 268 I 268 (786)
T ss_pred E
Confidence 8
No 310
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.24 E-value=0.0021 Score=53.28 Aligned_cols=65 Identities=32% Similarity=0.426 Sum_probs=46.1
Q ss_pred HHHHHH-hhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCC
Q 021192 200 ELENEL-SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL 273 (316)
Q Consensus 200 ~~~~~l-~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~ 273 (316)
.++.++ ..+.|++-+++.+-..+... -.+..++.|..+.|+|+|||||..+++.||+.++..|..
T Consensus 75 ~Le~dL~~~lfGQHla~~~Vv~alk~~---------~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~ 140 (344)
T KOG2170|consen 75 GLEKDLARALFGQHLAKQLVVNALKSH---------WANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR 140 (344)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHH---------hcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc
Confidence 344444 34778888877765533322 223335678889999999999999999999999986654
No 311
>PF13245 AAA_19: Part of AAA domain
Probab=97.23 E-value=0.0011 Score=43.76 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=16.7
Q ss_pred ceeeecCCCCcHH-HHHHHHHHHH
Q 021192 245 HMAFLGNPGTGKT-MVARILGRLL 267 (316)
Q Consensus 245 ~~l~~GppGtGKT-~la~~la~~~ 267 (316)
.+++.|||||||| ++++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566999999999 5555555555
No 312
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.23 E-value=0.00088 Score=59.91 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=25.1
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
...++++.||||||||++|++++..+..
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcc
Confidence 5678999999999999999999997764
No 313
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.22 E-value=0.0014 Score=50.72 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=43.1
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccccc-----ccccCch-------HHHHHHHHHhhcCC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG-----EFVGHTG-------PKTRRRVGHLLSEI 309 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~-----~~~g~~~-------~~~~~~~~~a~~~~ 309 (316)
.+..++++|++||||+.+|++|-... .-..+||+.++.+.+-. .++|+.. ..-+-+|++|.+|.
T Consensus 21 ~~~pVlI~GE~GtGK~~lA~~IH~~s----~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~Gt 96 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLARAIHNNS----PRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGGT 96 (168)
T ss_dssp STS-EEEECSTTSSHHHHHHHHHHCS----TTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSE
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHhh----hcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccceE
Confidence 55779999999999999999997733 33456999999865422 2334321 11235777777765
Q ss_pred cEE
Q 021192 310 TCL 312 (316)
Q Consensus 310 ~~~ 312 (316)
.++
T Consensus 97 L~L 99 (168)
T PF00158_consen 97 LFL 99 (168)
T ss_dssp EEE
T ss_pred Eee
Confidence 543
No 314
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.21 E-value=0.00045 Score=52.61 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=26.8
Q ss_pred eecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccc
Q 021192 248 FLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV 291 (316)
Q Consensus 248 ~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~ 291 (316)
+.||||+|||++++.||..+.. .-++..+++...+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~---------~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL---------VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS---------EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc---------ceechHHHHHHHH
Confidence 4799999999999999998643 5555566665554
No 315
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.21 E-value=0.00069 Score=52.90 Aligned_cols=23 Identities=39% Similarity=0.754 Sum_probs=21.1
Q ss_pred ceeeecCCCCcHHHHHHHHHHHH
Q 021192 245 HMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~ 267 (316)
.+++.||||+||||+|+.|++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999994
No 316
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.20 E-value=0.00087 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=22.8
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
++|.|+||+|||++|+.+++.+...|
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~ 27 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKN 27 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999987533
No 317
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.18 E-value=0.0011 Score=50.20 Aligned_cols=42 Identities=33% Similarity=0.472 Sum_probs=32.8
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccccccc
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF 290 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~ 290 (316)
.+.|.|.||+|||++|+++.+.+...|. +++-+++..+-..+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~----~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGI----KVYLLDGDNLRHGL 45 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-----EEEEEHHHHCTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC----cEEEecCcchhhcc
Confidence 4678899999999999999999998775 67777665554433
No 318
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.16 E-value=0.0013 Score=52.57 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=38.8
Q ss_pred CCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCc-------------------hHHHHH
Q 021192 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT-------------------GPKTRR 300 (316)
Q Consensus 240 ~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~-------------------~~~~~~ 300 (316)
...|.-+++.|+||+|||++++.+...+. .+.++.++..++... ..+- .....+
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~------~~~~v~i~~D~~r~~-~p~~~~~~~~~~~~~~~~~~~~a~~~~~~ 84 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG------GGGIVVIDADEFRQF-HPDYDELLKADPDEASELTQKEASRLAEK 84 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-------TT-SEEE-GGGGGGG-STTHHHHHHHHCCCTHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc------CCCeEEEehHHHHHh-ccchhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 35677788889999999999999888773 125666665544332 2211 123455
Q ss_pred HHHHhhcCCcEEEe
Q 021192 301 RVGHLLSEITCLTF 314 (316)
Q Consensus 301 ~~~~a~~~~~~~~f 314 (316)
+++.|.....-|||
T Consensus 85 ~~~~a~~~~~nii~ 98 (199)
T PF06414_consen 85 LIEYAIENRYNIIF 98 (199)
T ss_dssp HHHHHHHCT--EEE
T ss_pred HHHHHHHcCCCEEE
Confidence 66666666666655
No 319
>PHA00729 NTP-binding motif containing protein
Probab=97.16 E-value=0.00038 Score=55.96 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.7
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..++++|+||+|||++|.+++..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999875
No 320
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.15 E-value=0.00069 Score=53.86 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.7
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+++.|+||+|||++++.|+..+..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~ 25 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGL 25 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 688999999999999999998754
No 321
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.15 E-value=0.00049 Score=61.49 Aligned_cols=45 Identities=22% Similarity=0.404 Sum_probs=32.3
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccccccc
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF 290 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~ 290 (316)
..++++||||+|||.|++++++++.... +...++-++..++...+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~--~~~~v~yi~~~~~~~~~ 181 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENN--PNAKVVYVSSEKFTNDF 181 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhC--CCCcEEEEEHHHHHHHH
Confidence 4588999999999999999999986531 11256666666655443
No 322
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.14 E-value=0.00055 Score=61.57 Aligned_cols=45 Identities=20% Similarity=0.359 Sum_probs=30.9
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccccccc
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF 290 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~ 290 (316)
..+++|||||+|||.|++++++.+...+ +...++-++..+++..+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~--~~~~v~yi~~~~f~~~~ 175 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNE--PDLRVMYITSEKFLNDL 175 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHH
Confidence 3489999999999999999999876421 11234555555544443
No 323
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=97.14 E-value=0.00078 Score=34.51 Aligned_cols=28 Identities=61% Similarity=0.835 Sum_probs=21.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCcc
Q 021192 85 GETPLHMAAKNGCNEAAKLLLAHGAFIE 112 (316)
Q Consensus 85 g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~ 112 (316)
|.||+|+|+..++.++++.|++.+.+++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 6678888888888888888887776654
No 324
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.14 E-value=0.00059 Score=55.58 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=24.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..+++.||||+||||+|+.|++.+..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~ 32 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENL 32 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456899999999999999999998865
No 325
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.00099 Score=58.26 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=41.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+.+++|.+.+++.+.+.... ...+..++|+||+|+||+++|.++|+.+..
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~---------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRS---------------GRLHHAWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred CchhhccChHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4567788999888888765441 134455899999999999999999999975
No 326
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.12 E-value=0.00046 Score=53.97 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.2
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
-+++.|+||+||||+|+.++..+..
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4788999999999999999998754
No 327
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.11 E-value=0.00055 Score=44.36 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=20.2
Q ss_pred eeeecCCCCcHHHHHHHHHHHH
Q 021192 246 MAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~ 267 (316)
+.+.|+||+|||++++.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999987
No 328
>PRK14531 adenylate kinase; Provisional
Probab=97.09 E-value=0.00057 Score=53.85 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++.||||+|||++++.++..+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~ 28 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGL 28 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35889999999999999999998764
No 329
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.08 E-value=0.0018 Score=50.38 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=23.8
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
...+++.|++|+|||++++.++..+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~ 30 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 346889999999999999999998765
No 330
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0017 Score=58.24 Aligned_cols=73 Identities=22% Similarity=0.150 Sum_probs=47.2
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCC-CCCCCeeeecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI-LPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+|.-+.+.||||||||+|.|.+-+.+...-+ -+++|+..+++..- .-..-+....+.++++.|.-...+++.|
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~R-RiTflEcp~Dl~~miDvaKIaDLVlLlI 141 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTR-RITFLECPSDLHQMIDVAKIADLVLLLI 141 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeeccee-EEEEEeChHHHHHHHhHHHhhheeEEEe
Confidence 3444458999999999999999887754222 23445555544311 1123344577888899888777777655
No 331
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.06 E-value=0.00056 Score=53.89 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.6
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+++.|+||+|||++++.|+..+..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~ 25 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF 25 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 578999999999999999998864
No 332
>PRK14530 adenylate kinase; Provisional
Probab=97.03 E-value=0.00063 Score=55.13 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.8
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++.||||+||||+++.|++.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5888999999999999999998864
No 333
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.00059 Score=51.16 Aligned_cols=24 Identities=46% Similarity=0.648 Sum_probs=21.8
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+.+.||||+||||+|+.||..+.-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCC
Confidence 567899999999999999998875
No 334
>PRK14527 adenylate kinase; Provisional
Probab=97.03 E-value=0.00076 Score=53.56 Aligned_cols=28 Identities=36% Similarity=0.530 Sum_probs=24.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+.-+++.||||+|||++|+.++..+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4556889999999999999999987765
No 335
>PLN02674 adenylate kinase
Probab=97.03 E-value=0.001 Score=54.54 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=24.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..+++.||||+||||.++.|++.+..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~ 57 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCL 57 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3466899999999999999999998864
No 336
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.03 E-value=0.0012 Score=49.83 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.7
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+.+.|+||+|||++|+.|+..+..
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~ 25 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGL 25 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 568899999999999999998865
No 337
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.02 E-value=0.00078 Score=55.35 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=23.8
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
...++++||||+|||.+++++++....
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999988764
No 338
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.01 E-value=0.00084 Score=58.76 Aligned_cols=62 Identities=29% Similarity=0.389 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCCCCccccc------cccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh
Q 021192 61 AEIVKSLLEWPGNDKVELE------AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 126 (316)
Q Consensus 61 ~~~v~~Ll~~~~~~~~~~~------~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~ 126 (316)
...+++|.+ ++.+.| ..+..-.|+||+|+..|...+|.+||+.|+|+...|..|+||..++.
T Consensus 404 p~~ie~lke----n~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 404 PDSIEALKE----NLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred hhHHHHHHh----cCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 566777777 343332 33444679999999999999999999999999999999999999876
No 339
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.01 E-value=0.0011 Score=53.65 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.7
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.++++|+||+|||++++.||+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~ 26 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGI 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999998875
No 340
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.0023 Score=47.30 Aligned_cols=60 Identities=23% Similarity=0.360 Sum_probs=39.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc----cccccccccC------chHHHHHHHHHhhcC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR----TDLVGEFVGH------TGPKTRRRVGHLLSE 308 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~----~~~~~~~~g~------~~~~~~~~~~~a~~~ 308 (316)
..+++++.|-||+|||+++..+|....- +.+.++. .++...|.-+ .+.+++.-++-++-.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhc
Confidence 4567999999999999999999976665 5565553 3444444322 134555555555433
No 341
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.0018 Score=55.51 Aligned_cols=52 Identities=23% Similarity=0.233 Sum_probs=42.1
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
.+++++|.+.+++.+...+. ....+..++|+||+|+||+++|+++++.+...
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~---------------~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~ 53 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIK---------------QNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQ 53 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHH---------------hCCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 36778899999888877554 12356789999999999999999999998764
No 342
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.98 E-value=0.0028 Score=48.06 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.2
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
+++.|+||+|||++++.++..+...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~ 26 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQR 26 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 5788999999999999999998643
No 343
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.97 E-value=0.0016 Score=60.98 Aligned_cols=52 Identities=25% Similarity=0.400 Sum_probs=40.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++++|.+.+.+.+...+. ....+..++|+||+|+|||++|+++|+.+..
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~---------------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIA---------------TNKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHH---------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457888999988888777544 1123445899999999999999999998864
No 344
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.0017 Score=56.45 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=41.4
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..++..++|.+.+.+.+..... ....+..++|+||+|+|||++|+.+++.+..
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~---------------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYR---------------EGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHH---------------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3467778898888888877544 1123445899999999999999999999876
No 345
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.95 E-value=0.00078 Score=49.52 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=20.1
Q ss_pred eeeecCCCCcHHHHHHHHHHHH
Q 021192 246 MAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~ 267 (316)
+.+.|+||+||||+++.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999995
No 346
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0032 Score=48.08 Aligned_cols=61 Identities=21% Similarity=0.322 Sum_probs=43.7
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccccccc---ccCc----hHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF---VGHT----GPKTRRRVGHL 305 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~---~g~~----~~~~~~~~~~a 305 (316)
..+..+-|.|.+|+||||+|.++.+.+...|. .++-.++..+-..+ .|-| ..++|.+-+.|
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~----~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevA 88 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGY----HVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVA 88 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC----eEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHH
Confidence 34556778999999999999999999999887 66777765543322 3444 24566666555
No 347
>PRK08233 hypothetical protein; Provisional
Probab=96.94 E-value=0.0018 Score=50.90 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.0
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.-+.+.|+||+||||+|+.|+..+..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~ 29 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKN 29 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 34667899999999999999998753
No 348
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.94 E-value=0.0011 Score=57.20 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=32.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~ 286 (316)
....+++.|.+||||+.+|+++-.... -..++|+.+++..+
T Consensus 28 ~~~pVlI~GE~GtGK~~lA~~iH~~s~----r~~~pfv~v~c~~~ 68 (326)
T PRK11608 28 LDKPVLIIGERGTGKELIASRLHYLSS----RWQGPFISLNCAAL 68 (326)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhCC----ccCCCeEEEeCCCC
Confidence 456799999999999999999876443 23458999997654
No 349
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.94 E-value=0.00077 Score=54.27 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=29.4
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh--hcCCCCCCCee
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY--MVGILPTDRVT 279 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~--~~g~~~~~~~~ 279 (316)
+....+.+.||+|+||||++++|+..+. ..++++.+.++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~ 44 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY 44 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence 3445677899999999999999998876 34556655543
No 350
>PLN02459 probable adenylate kinase
Probab=96.94 E-value=0.0017 Score=53.56 Aligned_cols=27 Identities=41% Similarity=0.582 Sum_probs=23.4
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+..++|.||||+|||++++.+++.+..
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~~ 55 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLGV 55 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346888999999999999999998764
No 351
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.93 E-value=0.00074 Score=52.12 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=21.2
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+++.||||+|||++++.+++.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~ 24 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGA 24 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCC
Confidence 467899999999999999998763
No 352
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.93 E-value=0.0033 Score=50.18 Aligned_cols=72 Identities=25% Similarity=0.319 Sum_probs=49.9
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh--cCCCCCCCeeeec-ccccccccccCch-------------HHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM--VGILPTDRVTEVQ-RTDLVGEFVGHTG-------------PKTRRRVGHL 305 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~--~g~~~~~~~~~~~-~~~~~~~~~g~~~-------------~~~~~~~~~a 305 (316)
.-.+.++.|||++||||+.|-+|+.+.. .+++++. +.-++ ++++-+-..|+.. .+..-++...
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kk-v~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaI 214 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKK-VGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAI 214 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCce-EEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHH
Confidence 3456889999999999999999988764 4566664 44444 6777776666664 3344455556
Q ss_pred hcCCcEEEe
Q 021192 306 LSEITCLTF 314 (316)
Q Consensus 306 ~~~~~~~~f 314 (316)
+..+|-||.
T Consensus 215 rsm~PEViI 223 (308)
T COG3854 215 RSMSPEVII 223 (308)
T ss_pred HhcCCcEEE
Confidence 667776664
No 353
>PF13173 AAA_14: AAA domain
Probab=96.92 E-value=0.0022 Score=47.24 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=28.4
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccc
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~ 286 (316)
..+++.||.|+|||++++.+++.+. +....+.++..+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-----~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-----PPENILYINFDDP 40 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-----ccccceeeccCCH
Confidence 3478899999999999999998877 2225566655443
No 354
>PRK06547 hypothetical protein; Provisional
Probab=96.92 E-value=0.00095 Score=51.87 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=24.0
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..+..+.+.|++|+|||++++.+++.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4566778889999999999999999864
No 355
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.91 E-value=0.0013 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.6
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+++.||||+|||++|+.|+..+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~ 25 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGL 25 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 678999999999999999987764
No 356
>PRK14529 adenylate kinase; Provisional
Probab=96.91 E-value=0.0017 Score=52.47 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=22.7
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++.||||+||||+++.|+..+..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 4788999999999999999999875
No 357
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.91 E-value=0.00084 Score=52.49 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=23.5
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
++|.|+||+|||++|+-+++++...+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhh
Confidence 68899999999999999999998743
No 358
>PRK05642 DNA replication initiation factor; Validated
Probab=96.88 E-value=0.003 Score=51.86 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=22.8
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+.++||+|+|||.|+++++.++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~ 71 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQ 71 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 55889999999999999999987754
No 359
>PRK06620 hypothetical protein; Validated
Probab=96.88 E-value=0.00081 Score=54.31 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..+.++||||+|||.+++++++...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 5689999999999999999887654
No 360
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.86 E-value=0.0012 Score=51.58 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=25.2
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+..+.|.|+||+|||++++.++..+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35567889999999999999999999874
No 361
>PRK14528 adenylate kinase; Provisional
Probab=96.86 E-value=0.0012 Score=52.21 Aligned_cols=25 Identities=40% Similarity=0.716 Sum_probs=22.1
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++.||||+|||++++.++..+..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~ 27 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSI 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5788999999999999999987754
No 362
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.85 E-value=0.0013 Score=61.52 Aligned_cols=50 Identities=32% Similarity=0.566 Sum_probs=38.6
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
...++++.+.+...+.+...+. ...+++|+||||+|||+++++++..+..
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~------------------~~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAK------------------QRRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHH------------------hCCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 4567778888888777665333 1237999999999999999999998764
No 363
>PRK02496 adk adenylate kinase; Provisional
Probab=96.84 E-value=0.0011 Score=52.24 Aligned_cols=25 Identities=40% Similarity=0.687 Sum_probs=22.2
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++.||||+|||++++.|++.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~ 27 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHI 27 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999998754
No 364
>PRK08727 hypothetical protein; Validated
Probab=96.83 E-value=0.0037 Score=51.30 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=24.2
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
..+.++||+|+|||.++++++......|
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3489999999999999999998877644
No 365
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.83 E-value=0.0049 Score=48.11 Aligned_cols=29 Identities=38% Similarity=0.462 Sum_probs=24.5
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
...-+.+.|+||+|||++++.++..+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34467889999999999999999998653
No 366
>PRK14526 adenylate kinase; Provisional
Probab=96.81 E-value=0.002 Score=51.79 Aligned_cols=25 Identities=44% Similarity=0.806 Sum_probs=22.0
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++.||||+|||++++.+++.+..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~ 26 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNY 26 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999987754
No 367
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.79 E-value=0.0098 Score=56.97 Aligned_cols=65 Identities=23% Similarity=0.358 Sum_probs=43.8
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
.+..++|.....+.+.+.+..+. .....+++.|++|||||.+|++|...... ...+++.++.
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a--------------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r----~~~~~v~i~c 435 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVA--------------QSDSTVLILGETGTGKELIARAIHNLSGR----NNRRMVKMNC 435 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHh--------------CCCCCEEEECCCCcCHHHHHHHHHHhcCC----CCCCeEEEec
Confidence 34456666655555544333221 34567999999999999999999876643 3348888887
Q ss_pred ccc
Q 021192 284 TDL 286 (316)
Q Consensus 284 ~~~ 286 (316)
..+
T Consensus 436 ~~~ 438 (686)
T PRK15429 436 AAM 438 (686)
T ss_pred ccC
Confidence 654
No 368
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.78 E-value=0.0049 Score=49.20 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=24.9
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+..+.+.|+||+|||++++.++..+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35567888999999999999999998865
No 369
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.78 E-value=0.00083 Score=54.11 Aligned_cols=24 Identities=42% Similarity=0.638 Sum_probs=20.8
Q ss_pred CCCCceeeecCCCCcHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILG 264 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la 264 (316)
..+..+++||+||+|||++|+.++
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcC
Confidence 345679999999999999999886
No 370
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.77 E-value=0.0032 Score=47.60 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=35.6
Q ss_pred ecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHh-hcCCcEEEe
Q 021192 249 LGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHL-LSEITCLTF 314 (316)
Q Consensus 249 ~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-~~~~~~~~f 314 (316)
.+.+||||||++.+|+..+..-|.+ +..++-++ ...+-++++++.. ....++||+
T Consensus 5 IAtiGCGKTTva~aL~~LFg~wgHv--------QnDnI~~k---~~~~f~~~~l~~L~~~~~~vVia 60 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGEWGHV--------QNDNITGK---RKPKFIKAVLELLAKDTHPVVIA 60 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCCCCcc--------ccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEE
Confidence 4789999999999999988733443 33344333 2234455555544 467777775
No 371
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.75 E-value=0.0012 Score=52.14 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.7
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
-+++.|+||+||||+++.++..+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~ 29 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGF 29 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999987643
No 372
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.71 E-value=0.0015 Score=47.36 Aligned_cols=41 Identities=24% Similarity=0.256 Sum_probs=28.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
....++|.|+=|+|||+++|.+++.+...+.+.++.|.-++
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~ 54 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVN 54 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEE
Confidence 33457889999999999999999999887777777665544
No 373
>PHA02774 E1; Provisional
Probab=96.70 E-value=0.013 Score=53.69 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=39.7
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh--cC-CCCCCCeeeeccc----ccccccccCchHHHHHHHHHhhcCCc
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM--VG-ILPTDRVTEVQRT----DLVGEFVGHTGPKTRRRVGHLLSEIT 310 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~--~g-~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~a~~~~~ 310 (316)
..++|+||||||||.++.+|.+.+.. .. +..+..|.--... -++.+..+.....+-..+..+++|.|
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~FwLqpl~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~ 508 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHFWLQPLADAKIALLDDATHPCWDYIDTYLRNALDGNP 508 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECccccccchhccCCEEEEecCcchHHHHHHHHHHHHcCCCc
Confidence 46899999999999999999999863 11 1111222100111 12222233334566667888888874
No 374
>PRK04040 adenylate kinase; Provisional
Probab=96.70 E-value=0.0016 Score=51.51 Aligned_cols=26 Identities=31% Similarity=0.268 Sum_probs=22.9
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
+..+.++|+||+|||++++.+++.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 34578899999999999999999884
No 375
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.68 E-value=0.0031 Score=50.18 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=25.0
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhhcCCCC
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYMVGILP 274 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~~g~~~ 274 (316)
+.+.||||+||||+|+.|+..+...|+..
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~~~~ 30 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRGIPA 30 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCTTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccCcCc
Confidence 45789999999999999999999766653
No 376
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.68 E-value=0.0021 Score=50.05 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=26.2
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
.+++.|+||+|||++++.+|..+.. +++..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~-------~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGY-------RFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-------CEEEcc
Confidence 4788999999999999999999876 666544
No 377
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.68 E-value=0.0022 Score=59.17 Aligned_cols=44 Identities=27% Similarity=0.508 Sum_probs=31.6
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccc
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV 291 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~ 291 (316)
++|+|++|+|||.|++++++.+... .+...++-++..+++..|+
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~--~~g~~V~Yitaeef~~el~ 360 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRL--YPGTRVRYVSSEEFTNEFI 360 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh--CCCCeEEEeeHHHHHHHHH
Confidence 8899999999999999999988641 0111456666666665554
No 378
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.0014 Score=49.80 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=20.7
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++.|.||+|||++++.|+ .+..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~ 25 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGY 25 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCC
Confidence 36789999999999999999 6655
No 379
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.66 E-value=0.0026 Score=50.77 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.1
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+++.||+|+||||+.+++...+..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 678999999999999998887753
No 380
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.66 E-value=0.0037 Score=54.06 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=32.6
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~ 286 (316)
....+++.|++||||+++|++|...... ...+|+.++++.+
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r----~~~pfv~vnc~~~ 61 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKR----WQGPLVKLNCAAL 61 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCc----cCCCeEEEeCCCC
Confidence 4567999999999999999999775543 3459999997644
No 381
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.66 E-value=0.0038 Score=53.70 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=25.2
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
..+..+-+.|+||+||||+...+...+...
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 355678899999999999999998888763
No 382
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.65 E-value=0.0022 Score=57.94 Aligned_cols=54 Identities=28% Similarity=0.404 Sum_probs=43.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
..+++++|++.+...++..+.. .......+|.||-|+|||++||.+|+.+....
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~---------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~ 66 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALEN---------------GRIAHAYLFSGPRGVGKTTIARILAKALNCEN 66 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHh---------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCC
Confidence 4577789999998888875541 13455689999999999999999999998754
No 383
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.64 E-value=0.005 Score=53.04 Aligned_cols=38 Identities=29% Similarity=0.428 Sum_probs=27.8
Q ss_pred eeeecCCCCcHHHHHHHHHHHHh-hcCCCCCCCeeeecccccc
Q 021192 246 MAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLV 287 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~-~~g~~~~~~~~~~~~~~~~ 287 (316)
+.|.|+||+||||+++.++..+. ..|+ .+.-++..|++
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~----~v~~~~~Dd~i 40 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW----AVAVITYDDII 40 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC----eEEEEcccccc
Confidence 57899999999999999998886 3333 34444445544
No 384
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.64 E-value=0.0032 Score=49.51 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=21.5
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 239 GARRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 239 ~~~~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
....+..++++|++|+|||++.+.+...+...
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34566889999999999999999888888763
No 385
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.64 E-value=0.002 Score=52.28 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=27.9
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccc
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 287 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~ 287 (316)
.+.++||+|+|||.|..++++++.... +...++-+++.++.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~--~~~~v~y~~~~~f~ 76 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQH--PGKRVVYLSAEEFI 76 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHC--TTS-EEEEEHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhcc--ccccceeecHHHHH
Confidence 378899999999999999999876521 11144555544443
No 386
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.63 E-value=0.0015 Score=52.63 Aligned_cols=37 Identities=30% Similarity=0.505 Sum_probs=27.6
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh--hcCCCCCCCe
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY--MVGILPTDRV 278 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~--~~g~~~~~~~ 278 (316)
.+..+.+.|+||+||||+++.|++.+. ...++..+.+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 456788899999999999999999883 2333444444
No 387
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.61 E-value=0.0023 Score=50.64 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.8
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..++|+||||+|||++|+.+++.+..
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4556899999999999999999999865
No 388
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.0055 Score=53.07 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=24.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..++|+||+|+||+++|+++++.+..
T Consensus 27 l~ha~Lf~G~~G~gk~~~a~~la~~l~c 54 (329)
T PRK08058 27 LSHAYLFEGAKGTGKKATALWLAKSLFC 54 (329)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHCC
Confidence 4455699999999999999999999865
No 389
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.59 E-value=0.0078 Score=50.30 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=39.3
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhc--CCCCCCCeeeecccccccccc-cCchHHHHHHHHHhhcCCcEEEec
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMV--GILPTDRVTEVQRTDLVGEFV-GHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~--g~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
..+++.|++|+||||+.+++...+... .++....-.|.....+..--+ .+......+++..++-..|-+|+|
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~v 155 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMV 155 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEe
Confidence 347899999999999999887766431 122111112222211111111 122234566666666667777765
No 390
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.58 E-value=0.0021 Score=47.43 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=20.9
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
...++++|+||+|||++++.+++.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 456889999999999999999998853
No 391
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=96.58 E-value=0.0025 Score=58.01 Aligned_cols=47 Identities=34% Similarity=0.470 Sum_probs=33.3
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
++.++.+....++.+... .....++++.||||+|||++++.+...+.
T Consensus 190 d~~dv~Gq~~~~~al~~a------------------a~~g~~vlliG~pGsGKTtlar~l~~llp 236 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIA------------------AAGGHNLLLFGPPGSGKTMLASRLQGILP 236 (499)
T ss_pred CHHHhcCcHHHHhhhhhh------------------ccCCCEEEEEecCCCCHHHHHHHHhcccC
Confidence 566677766665544321 12446799999999999999999987543
No 392
>PRK10646 ADP-binding protein; Provisional
Probab=96.56 E-value=0.0045 Score=46.67 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=34.1
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
...++|.|+=|+|||+++|.+++.+...+.++++.|.-++.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SPTFtlv~~ 68 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTLVEP 68 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCCCCCCCCEeeEEE
Confidence 34578999999999999999999998877788877766553
No 393
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=96.56 E-value=0.0011 Score=55.27 Aligned_cols=28 Identities=43% Similarity=0.655 Sum_probs=25.1
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+|++||||||+|||+...+.|+.++.
T Consensus 61 ~lPh~L~YgPPGtGktsti~a~a~~ly~ 88 (360)
T KOG0990|consen 61 GLPHLLFYGPPGTGKTSTILANARDFYS 88 (360)
T ss_pred CCCcccccCCCCCCCCCchhhhhhhhcC
Confidence 3449999999999999999999999887
No 394
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.55 E-value=0.017 Score=48.90 Aligned_cols=28 Identities=25% Similarity=0.365 Sum_probs=23.7
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..++|.||+|+|||+++..++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4557889999999999999999887753
No 395
>PRK10536 hypothetical protein; Provisional
Probab=96.54 E-value=0.0035 Score=51.48 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=35.4
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhhcC----CCCCCCeeeecccccccccccCchHHHHHHHH
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYMVG----ILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVG 303 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~~g----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 303 (316)
-+++.||+|||||++|++++......+ ++.+.|.+ ...+.++.+-|.-+.++.-++.
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v--~~ge~LGfLPG~~~eK~~p~~~ 136 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVL--QADEDLGFLPGDIAEKFAPYFR 136 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCC--CchhhhCcCCCCHHHHHHHHHH
Confidence 577889999999999999998643212 11122222 2245566677776655554443
No 396
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0037 Score=54.71 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=31.3
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccc
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~ 284 (316)
..|.+++++|+||||||.+++-+.+++...--. ..++.+++.
T Consensus 40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~--~~~~yINc~ 81 (366)
T COG1474 40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSAN--VEVVYINCL 81 (366)
T ss_pred CCCccEEEECCCCCCHhHHHHHHHHHHHhhhcc--CceEEEeee
Confidence 466679999999999999999999999872110 015666663
No 397
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.53 E-value=0.0021 Score=50.82 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.2
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.+++.||+|+||||+++.|+....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 578899999999999999988654
No 398
>PRK06696 uridine kinase; Validated
Probab=96.51 E-value=0.0043 Score=50.56 Aligned_cols=31 Identities=32% Similarity=0.372 Sum_probs=26.1
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
..+.-+.+.|+||+||||+|+.|+..+...|
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g 50 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRG 50 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3456778899999999999999999997543
No 399
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=96.51 E-value=0.023 Score=45.00 Aligned_cols=119 Identities=15% Similarity=0.207 Sum_probs=83.5
Q ss_pred hhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHH
Q 021192 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK 94 (316)
Q Consensus 15 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~ 94 (316)
-.|-.|+..-+++.+..++... .+-.++|-+|..++..+++-+|+....-...|+-.. ..+.--+-|+..
T Consensus 155 isledAV~AsN~~~i~~~VtdK---------kdA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~-~~~~ydieY~LS 224 (284)
T PF06128_consen 155 ISLEDAVKASNYEEISNLVTDK---------KDAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM-EKELYDIEYLLS 224 (284)
T ss_pred ccHHHHHhhcCHHHHHHHhcch---------HHHHHHHHHHhcccHHHHHHHHHhhcceecchhhhc-CcchhhHHHHHh
Confidence 3466788888888887777432 124588999998999999999998422112222111 112223444433
Q ss_pred --cCCHHHHHHHHhcC-CCccc---cccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCC
Q 021192 95 --NGCNEAAKLLLAHG-AFIEA---KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147 (316)
Q Consensus 95 --~~~~~~~~~Ll~~g-~~~~~---~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~ 147 (316)
..+..++++++++| +++|. +-++|.|-|.-|. +.++.+++.+|+++||-
T Consensus 225 ~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~----Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 225 EHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAM----KYKNSEMIAFLLKYGAI 279 (284)
T ss_pred hcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHH----hcCcHHHHHHHHHcCcc
Confidence 34577899999999 78874 4678999999999 88999999999999984
No 400
>PRK05439 pantothenate kinase; Provisional
Probab=96.50 E-value=0.0088 Score=50.88 Aligned_cols=69 Identities=23% Similarity=0.242 Sum_probs=42.8
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh------cCCCCCCCeeeeccc----ccccccccCc----hHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM------VGILPTDRVTEVQRT----DLVGEFVGHT----GPKTRRRVGHLL 306 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~------~g~~~~~~~~~~~~~----~~~~~~~g~~----~~~~~~~~~~a~ 306 (316)
..+.-+.+.|+||+||||+|+.|+..+.. ..+++.+.|+.-... .++..+ |.. ...+.+.+...+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~k-g~Pes~D~~~l~~~L~~Lk 162 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRK-GFPESYDMRALLRFLSDVK 162 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccC-CCcccccHHHHHHHHHHHH
Confidence 45566778999999999999999987753 345555555533311 122111 222 245667777777
Q ss_pred cCCc
Q 021192 307 SEIT 310 (316)
Q Consensus 307 ~~~~ 310 (316)
.|..
T Consensus 163 ~G~~ 166 (311)
T PRK05439 163 SGKP 166 (311)
T ss_pred cCCC
Confidence 6655
No 401
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.50 E-value=0.0046 Score=53.41 Aligned_cols=47 Identities=32% Similarity=0.431 Sum_probs=33.7
Q ss_pred hhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 206 ~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..++|++.++..+.-..- .+..-++++.|+||+|||+++|+++..+.
T Consensus 4 ~~ivgq~~~~~al~~~~~----------------~~~~g~vli~G~~G~gKttl~r~~~~~~~ 50 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVI----------------DPKIGGVMVMGDRGTGKSTAVRALAALLP 50 (337)
T ss_pred cccccHHHHHHHHHHHhc----------------CCCCCeEEEEcCCCCCHHHHHHHHHHhhc
Confidence 456777777766532110 12345799999999999999999998874
No 402
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.50 E-value=0.0054 Score=57.92 Aligned_cols=47 Identities=36% Similarity=0.410 Sum_probs=33.4
Q ss_pred HhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 205 l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
+..++|++.++..+.-... .....+++|.|+||+|||++||+|+..+
T Consensus 3 f~~ivGq~~~~~al~~~av----------------~~~~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAV----------------DPRIGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred cchhcChHHHHHHHHHHhh----------------CCCCCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 3456777777655532111 1123469999999999999999999987
No 403
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.50 E-value=0.008 Score=46.26 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=24.2
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~ 272 (316)
.+..++|+||+|+||+++|+.+++.+.....
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 4555899999999999999999999987443
No 404
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.49 E-value=0.0052 Score=55.49 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=32.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccc
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV 291 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~ 291 (316)
..+.++|++|+|||.|++++++.+.... +.-.++-++..++...+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~--~~~~v~yv~~~~f~~~~~ 187 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNF--SDLKVSYMSGDEFARKAV 187 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHHH
Confidence 3488999999999999999999876411 112455666666665554
No 405
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.48 E-value=0.0022 Score=50.44 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=27.7
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeee
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~ 281 (316)
+.+.|+||+|||++|+.|+..+....+++.+.++.-
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 457899999999999999999855555555555543
No 406
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.47 E-value=0.0048 Score=56.67 Aligned_cols=69 Identities=19% Similarity=0.219 Sum_probs=46.3
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh-c---CCCCCCCee
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM-V---GILPTDRVT 279 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~-~---g~~~~~~~~ 279 (316)
.+++++|.....+.+.+.+.... .....+++.|++||||+.+|++|-..+.. - ..-..+||+
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A--------------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv 282 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYA--------------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFV 282 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHh--------------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeE
Confidence 35667777766666655433221 35567999999999999999999876210 0 122445999
Q ss_pred eeccccc
Q 021192 280 EVQRTDL 286 (316)
Q Consensus 280 ~~~~~~~ 286 (316)
.++.+.+
T Consensus 283 ~inCaal 289 (538)
T PRK15424 283 AVNCGAI 289 (538)
T ss_pred EeecccC
Confidence 9997654
No 407
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.47 E-value=0.0025 Score=52.06 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=16.6
Q ss_pred eeeecCCCCcHHHHHHHHHHHH
Q 021192 246 MAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~ 267 (316)
.++.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7789999999998666665555
No 408
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.45 E-value=0.0065 Score=55.83 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=45.4
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
.+++++|.....+.+.+.+..+. .....+++.|++||||+.+|++|...... ..+||+.++.
T Consensus 210 ~f~~iiG~S~~m~~~~~~i~~~A--------------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r----~~~pfv~inC 271 (526)
T TIGR02329 210 RLDDLLGASAPMEQVRALVRLYA--------------RSDATVLILGESGTGKELVAQAIHQLSGR----RDFPFVAINC 271 (526)
T ss_pred chhheeeCCHHHHHHHHHHHHHh--------------CCCCcEEEECCCCcCHHHHHHHHHHhcCc----CCCCEEEecc
Confidence 35567777666655555433221 35567999999999999999999775432 3459999997
Q ss_pred ccc
Q 021192 284 TDL 286 (316)
Q Consensus 284 ~~~ 286 (316)
..+
T Consensus 272 ~~l 274 (526)
T TIGR02329 272 GAI 274 (526)
T ss_pred ccC
Confidence 654
No 409
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.44 E-value=0.0023 Score=54.72 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.0
Q ss_pred ceeeecCCCCcHHHHHHHHHHHH
Q 021192 245 HMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~ 267 (316)
-+++.|+||+||||+|+.+++.+
T Consensus 4 liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHC
Confidence 46788999999999999999987
No 410
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.44 E-value=0.005 Score=50.52 Aligned_cols=32 Identities=38% Similarity=0.523 Sum_probs=28.2
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhcCC
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~g~ 272 (316)
...+|++||||+|+||-|.+.++-+++++.|+
T Consensus 32 ~d~PHll~yGPSGaGKKTrimclL~elYG~gv 63 (351)
T KOG2035|consen 32 GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGV 63 (351)
T ss_pred CCCCeEEEECCCCCCchhhHHHHHHHHhCCCc
Confidence 45689999999999999999999999998544
No 411
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.43 E-value=0.013 Score=50.25 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=29.5
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
.+...+.+.|+||+|||++++.++..+.. +++.++
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~-------~~id~D 165 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGV-------PFVELN 165 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCC-------CEEeHH
Confidence 35567889999999999999999999877 777555
No 412
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.42 E-value=0.0082 Score=50.58 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=27.6
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 276 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~ 276 (316)
.|..+++.|++|+|||++|..||..+....++.++
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D 125 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIGTD 125 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEech
Confidence 46678899999999999999999998653333333
No 413
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.41 E-value=0.014 Score=56.00 Aligned_cols=42 Identities=31% Similarity=0.388 Sum_probs=28.1
Q ss_pred CCce-eeecCCCCcHHHHHHHHHHHHhhc---CCCCCCCeeeeccc
Q 021192 243 PPHM-AFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTEVQRT 284 (316)
Q Consensus 243 ~~~~-l~~GppGtGKT~la~~la~~~~~~---g~~~~~~~~~~~~~ 284 (316)
+..+ .++|+||||||.+++.+.+.+... ..++.=.++.+++.
T Consensus 780 pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 780 SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 3344 589999999999999998887531 12221245667663
No 414
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.40 E-value=0.0026 Score=49.05 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=17.9
Q ss_pred eeeecCCCCcHHHHHHHHHHH
Q 021192 246 MAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~ 266 (316)
+.+.|+||||||||++.|+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 415
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.39 E-value=0.0058 Score=45.48 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=34.8
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
....+++.|+=|+|||+++|.+++.+...+.+.++.|.-+.
T Consensus 24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtlv~ 64 (149)
T COG0802 24 AGDVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTLVE 64 (149)
T ss_pred CCCEEEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeeeeh
Confidence 45567889999999999999999999988888887766555
No 416
>PRK13975 thymidylate kinase; Provisional
Probab=96.39 E-value=0.0055 Score=48.79 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.6
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
-+.+.|++|+||||+++.|++.+..
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678899999999999999999875
No 417
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.38 E-value=0.0043 Score=52.83 Aligned_cols=73 Identities=16% Similarity=0.152 Sum_probs=41.6
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh----cCCCCCCCeeeec--ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM----VGILPTDRVTEVQ--RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~----~g~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
...+++.|++|+|||++++++...... .-++......|+. ..+.+.-..+.......+++..++-..|-.|++
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 356899999999999999999887642 1111111111111 112222222222225677777777777776664
No 418
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.38 E-value=0.0029 Score=49.57 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.6
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
-+++.||||+|||+++++|+..+..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3678999999999999999887654
No 419
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.0048 Score=46.38 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=25.8
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
.+..+.+.|+||+|||+++.-++..+...|
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 456788999999999999999999888754
No 420
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.35 E-value=0.01 Score=49.68 Aligned_cols=64 Identities=23% Similarity=0.280 Sum_probs=36.1
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccc-c--cc-ccCchHHHHHHHHH----hhcCCcEEE
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV-G--EF-VGHTGPKTRRRVGH----LLSEITCLT 313 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~-~--~~-~g~~~~~~~~~~~~----a~~~~~~~~ 313 (316)
++++|.||+|||++|+.|...+...+. .+..++..++. . .| ....|+.+|..+.. ++...-+||
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~----~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI 75 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGK----EVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVI 75 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT------EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCC----EEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEE
Confidence 678999999999999999999887321 34444432222 1 12 34557766655544 444544444
No 421
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.35 E-value=0.0061 Score=52.57 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=23.3
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+.+.|+||+|||+|++.|++.+..
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~ 188 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNT 188 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 46899999999999999999998765
No 422
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.35 E-value=0.0041 Score=48.10 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.2
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
++++.|+||+||||+.+.+...+..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhc
Confidence 4789999999999999999988854
No 423
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.35 E-value=0.011 Score=47.19 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHHH
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~ 267 (316)
..+++.||+|+|||++.|.++...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 567899999999999999998655
No 424
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.33 E-value=0.0089 Score=51.08 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=24.9
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+..+.+.|+||+|||+++..++..+..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45677888999999999999999988755
No 425
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.32 E-value=0.015 Score=50.79 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=23.0
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
....+++||||+|||++++.+++....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 345788899999999999999987765
No 426
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.32 E-value=0.0098 Score=55.09 Aligned_cols=33 Identities=21% Similarity=0.482 Sum_probs=29.2
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
..+.|.|.||+|||++.+.+|+.+.. +|+.++.
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~-------~fiD~D~ 39 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRL-------PFADADV 39 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCC-------CEEEchH
Confidence 45788899999999999999999998 8887775
No 427
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.32 E-value=0.0036 Score=47.90 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.1
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
++++|+||+|||+++..++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 678999999999999999888753
No 428
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.30 E-value=0.02 Score=45.05 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=25.2
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
.+.-+.+.|+||+|||++++.++..+...|
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~ 46 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKG 46 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 455678899999999999999999886533
No 429
>PRK09087 hypothetical protein; Validated
Probab=96.30 E-value=0.013 Score=47.83 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.4
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..+.++||+|+|||.|+++++....
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~ 69 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD 69 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC
Confidence 3489999999999999999887643
No 430
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.29 E-value=0.0033 Score=54.13 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=22.1
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
...-+.|.||+||||||+.|.||..-.
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 334577899999999999999987554
No 431
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.28 E-value=0.0095 Score=47.96 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=22.2
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..-+.++||||+|||+++..++.....
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~ 38 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR 38 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345678999999999999988877654
No 432
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.27 E-value=0.0078 Score=47.62 Aligned_cols=38 Identities=29% Similarity=0.335 Sum_probs=28.5
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccccccc
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF 290 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~ 290 (316)
.+++||+|||||.+|-.+|+.+.. +++..++--+..++
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~-------pvI~~Driq~y~~l 41 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGA-------PVISLDRIQCYPEL 41 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH---------EEEEE-SGGG-GGG
T ss_pred EEEECCCCCChhHHHHHHHHHhCC-------CEEEecceeccccc
Confidence 578999999999999999999998 88888876665554
No 433
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.0058 Score=48.30 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=30.3
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccccc
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG 288 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~ 288 (316)
+......|.||+||||||+.|.+-+......-.....-+...+.++.+
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~ 78 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccC
Confidence 344556889999999999999997766543322222333344444433
No 434
>PHA02624 large T antigen; Provisional
Probab=96.26 E-value=0.0041 Score=57.00 Aligned_cols=26 Identities=31% Similarity=0.184 Sum_probs=23.8
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..++|+||||||||+++.+|.+.+.+
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G 457 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGG 457 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 46889999999999999999999976
No 435
>PRK07667 uridine kinase; Provisional
Probab=96.26 E-value=0.0072 Score=48.03 Aligned_cols=28 Identities=21% Similarity=0.145 Sum_probs=24.0
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
.-+.+.|+||+|||++++.|+..+...|
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~ 45 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEG 45 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 4567889999999999999999987644
No 436
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.24 E-value=0.0041 Score=49.47 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.4
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.-+++.|.||+|||++++.++..+..
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~ 29 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAI 29 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 45778999999999999999998644
No 437
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.23 E-value=0.0034 Score=53.78 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=23.8
Q ss_pred CCCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 240 ARRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 240 ~~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
-....-+.|.||+||||||+.|.||..-.
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34556789999999999999999987544
No 438
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.22 E-value=0.0081 Score=52.69 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=28.2
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGIL 273 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~ 273 (316)
...+++..||||+||||+|.++|..+...|.+
T Consensus 262 raeGILIAG~PGaGKsTFaqAlAefy~~~Gki 293 (604)
T COG1855 262 RAEGILIAGAPGAGKSTFAQALAEFYASQGKI 293 (604)
T ss_pred hhcceEEecCCCCChhHHHHHHHHHHHhcCcE
Confidence 45679999999999999999999999987643
No 439
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=96.21 E-value=0.012 Score=48.02 Aligned_cols=57 Identities=25% Similarity=0.117 Sum_probs=38.0
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHH-HHhhcCCcEE
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRV-GHLLSEITCL 312 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~a~~~~~~~ 312 (316)
..+-.+.||+|||||.+.+.+|+.+.. .++.++.++-+. .+.+.++| -.|..|+|+.
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~-------~~~vfnc~~~~~------~~~l~ril~G~~~~GaW~c 89 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGR-------FVVVFNCSEQMD------YQSLSRILKGLAQSGAWLC 89 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT---------EEEEETTSSS-------HHHHHHHHHHHHHHT-EEE
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCC-------eEEEeccccccc------HHHHHHHHHHHhhcCchhh
Confidence 345678999999999999999999988 888888765433 23333333 4455555554
No 440
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.20 E-value=0.0074 Score=55.70 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=43.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..++++++.......+.+....+. .....++++|.+||||+.+|+++..... -..++|+.++
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A--------------~~~~pvlI~GE~GtGK~~lA~aiH~~s~----r~~~pfv~in 262 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLA--------------MLDAPLLITGDTGTGKDLLAYACHLRSP----RGKKPFLALN 262 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHh--------------CCCCCEEEECCCCccHHHHHHHHHHhCC----CCCCCeEEec
Confidence 355667776665554444332221 2344599999999999999999866443 2345899999
Q ss_pred cccc
Q 021192 283 RTDL 286 (316)
Q Consensus 283 ~~~~ 286 (316)
.+.+
T Consensus 263 ca~~ 266 (520)
T PRK10820 263 CASI 266 (520)
T ss_pred cccC
Confidence 7654
No 441
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.20 E-value=0.0073 Score=51.82 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=42.9
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCee------eec--ccccccccccCchHHHHHHHHHhhcCCcEEE
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT------EVQ--RTDLVGEFVGHTGPKTRRRVGHLLSEITCLT 313 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~------~~~--~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~ 313 (316)
....+++.|++|+|||++++++....... .+...++ |+. ..+.+. +....+....++++.++-..|-.|
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~--~~~~rivtIEd~~El~~~~~~~v~-~~~~~~~~~~~ll~~aLR~~PD~I 223 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQ--DPTERVFIIEDTGEIQCAAENYVQ-YHTSIDVNMTALLKTTLRMRPDRI 223 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhc--CCCceEEEEcCCCccccCCCCEEE-EecCCCCCHHHHHHHHhcCCCCEE
Confidence 34679999999999999999999875321 0111122 111 122221 222224457788888888888777
Q ss_pred ec
Q 021192 314 FI 315 (316)
Q Consensus 314 f~ 315 (316)
++
T Consensus 224 iv 225 (319)
T PRK13894 224 LV 225 (319)
T ss_pred EE
Confidence 64
No 442
>PRK01184 hypothetical protein; Provisional
Probab=96.20 E-value=0.0044 Score=48.81 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=18.4
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~ 268 (316)
-+.+.|+||+||||+++ +++.+.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g 25 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMG 25 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcC
Confidence 46789999999999998 555554
No 443
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.19 E-value=0.017 Score=47.28 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=25.1
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+.-+.+.||+|+||||+++.++..+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 35566788999999999999999998876
No 444
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.18 E-value=0.028 Score=47.45 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=24.0
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..|.-+.+.||+|+||||+++.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566677899999999999999988876
No 445
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.17 E-value=0.008 Score=47.13 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=18.5
Q ss_pred eeeecCCCCcHHHHHHHHHH
Q 021192 246 MAFLGNPGTGKTMVARILGR 265 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~ 265 (316)
+.++|+||+|||++++.+++
T Consensus 2 i~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999988
No 446
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.17 E-value=0.017 Score=50.66 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=35.2
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccc
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 287 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~ 287 (316)
....++++.|++||||+.+|+.|....... ..+||+.++.+++-
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH~~s~r~---~~~PFI~~NCa~~~ 142 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIHALSARR---AEAPFIAFNCAAYS 142 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHHhhhcc---cCCCEEEEEHHHhC
Confidence 456789999999999999999998444432 67799999986653
No 447
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.16 E-value=0.0096 Score=55.29 Aligned_cols=64 Identities=22% Similarity=0.266 Sum_probs=44.0
Q ss_pred HhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccc
Q 021192 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (316)
Q Consensus 205 l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~ 284 (316)
++.++|.....+.+.+.+..+. .....+++.|++||||+++|++|...... ..++|+.++.+
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a--------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r----~~~pfv~i~c~ 256 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVA--------------RSNSTVLLRGESGTGKELIAKAIHYLSPR----AKRPFVKVNCA 256 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHh--------------CcCCCEEEECCCCccHHHHHHHHHHhCCC----CCCCeEEeecC
Confidence 3456666655555544333221 34567999999999999999999886542 34489999986
Q ss_pred cc
Q 021192 285 DL 286 (316)
Q Consensus 285 ~~ 286 (316)
.+
T Consensus 257 ~~ 258 (534)
T TIGR01817 257 AL 258 (534)
T ss_pred CC
Confidence 54
No 448
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.16 E-value=0.0093 Score=52.88 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.5
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
-...+.+.|++|||||||+++|+..+..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~ 245 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNT 245 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4567899999999999999999998755
No 449
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.16 E-value=0.0048 Score=48.87 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=22.9
Q ss_pred ccCCCCCCceeeecCCCCcHHHHHHHHHH
Q 021192 237 KVGARRPPHMAFLGNPGTGKTMVARILGR 265 (316)
Q Consensus 237 ~~~~~~~~~~l~~GppGtGKT~la~~la~ 265 (316)
.+.-.....+.+.||+|+||||+.|++..
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred ceeEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 33345566788999999999999998854
No 450
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.16 E-value=0.0077 Score=54.11 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.5
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+-++++||+|+||||..+.|++++.-
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~ 136 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGY 136 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCc
Confidence 45788999999999999999999976
No 451
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.16 E-value=0.0059 Score=48.56 Aligned_cols=27 Identities=37% Similarity=0.507 Sum_probs=24.2
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
-+++.|+||+||||+++.|++.+...|
T Consensus 5 ~IvieG~~GsGKsT~~~~L~~~l~~~g 31 (195)
T TIGR00041 5 FIVIEGIDGAGKTTQANLLKKLLQENG 31 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 477889999999999999999998755
No 452
>PRK13808 adenylate kinase; Provisional
Probab=96.15 E-value=0.008 Score=51.51 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.5
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.++++||||+|||++++.|+..+..
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl 26 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGI 26 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998764
No 453
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.15 E-value=0.0077 Score=51.61 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=41.7
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh----cCCCCCCCeeeec--ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM----VGILPTDRVTEVQ--RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~----~g~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
..++++.|++|+|||++++++...... .-++......|+. ....+. +.........+++..++-..|-.|++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~-l~~~~~~~~~~lv~~aLR~~PD~Iiv 221 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVA-LHTSDTVDMARLLKSTMRLRPDRIIV 221 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEE-eccCCCcCHHHHHHHHhCCCCCEEEE
Confidence 456899999999999999999887631 1111111111111 111111 11222344677777777777777764
No 454
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.15 E-value=0.0049 Score=51.77 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=22.5
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..++++||||+|||++++.+.+.+..
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 34789999999999999999888763
No 455
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.15 E-value=0.0049 Score=49.23 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.1
Q ss_pred eeeecCCCCcHHHHHHHHHHHH
Q 021192 246 MAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~ 267 (316)
+.+.||+|+||||+++.|+..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999987
No 456
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.14 E-value=0.008 Score=47.47 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.2
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
....+++.||+|+|||++.+++.....
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 445689999999999999999988764
No 457
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.0046 Score=50.08 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=24.9
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 239 GARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 239 ~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
......-+.+.||+|||||||.|++|.....
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3345566889999999999999999886653
No 458
>PRK12338 hypothetical protein; Provisional
Probab=96.13 E-value=0.0044 Score=52.70 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=24.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.|..+++.|+||+|||++|+.+|..+..
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~ 30 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNI 30 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCC
Confidence 3556788999999999999999999865
No 459
>PRK15453 phosphoribulokinase; Provisional
Probab=96.11 E-value=0.007 Score=50.38 Aligned_cols=42 Identities=26% Similarity=0.457 Sum_probs=30.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCC----CCCCCeeeecc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI----LPTDRVTEVQR 283 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~----~~~~~~~~~~~ 283 (316)
.+..+.+.|.||+|||+++++++..+...++ +..+.++..++
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr 49 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTR 49 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccCh
Confidence 3455788999999999999999998875442 34444444443
No 460
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.11 E-value=0.0061 Score=53.11 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=39.8
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc-cc---------cccccccCchHHHHHHHHHhhcCCcEEE
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR-TD---------LVGEFVGHTGPKTRRRVGHLLSEITCLT 313 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~-~~---------~~~~~~g~~~~~~~~~~~~a~~~~~~~~ 313 (316)
..+++.||+|+||||+.+++...+... ..+.++.+.- .+ +...-+|.......+.+..++-..|-+|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~---~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i 199 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKN---AAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVI 199 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcC---CCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEE
Confidence 457899999999999999988866431 0112222111 01 1111234433445666677766677776
Q ss_pred ec
Q 021192 314 FI 315 (316)
Q Consensus 314 f~ 315 (316)
++
T Consensus 200 ~v 201 (343)
T TIGR01420 200 LI 201 (343)
T ss_pred EE
Confidence 64
No 461
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.11 E-value=0.0057 Score=49.09 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=23.2
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
...-+++.||+|+|||++++.++..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 445678999999999999999998764
No 462
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.11 E-value=0.018 Score=45.84 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=22.8
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
...++.|+||||||++.+.+...+...
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 457788999999999999988877763
No 463
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.10 E-value=0.0045 Score=58.80 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=32.1
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~ 286 (316)
....++++|++||||+.+|+++...... ..++|+.++.+.+
T Consensus 347 ~~~pvli~Ge~GtGK~~~A~~ih~~s~r----~~~pfv~vnc~~~ 387 (638)
T PRK11388 347 SSFPVLLCGEEGVGKALLAQAIHNESER----AAGPYIAVNCQLY 387 (638)
T ss_pred cCCCEEEECCCCcCHHHHHHHHHHhCCc----cCCCeEEEECCCC
Confidence 4456999999999999999999876542 3348999987543
No 464
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.09 E-value=0.0066 Score=48.30 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=23.5
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhhcCC
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYMVGI 272 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~~g~ 272 (316)
+.|.|++|+||||+++.|++.+...|.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~ 29 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGY 29 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 578899999999999999999976553
No 465
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.09 E-value=0.007 Score=47.45 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.6
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+.+.|+||+|||++++.++..+..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999864
No 466
>PF05729 NACHT: NACHT domain
Probab=96.08 E-value=0.0063 Score=46.75 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=23.4
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
-+++.|+||+|||++++.++..+...+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 367899999999999999998887744
No 467
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.08 E-value=0.016 Score=48.10 Aligned_cols=47 Identities=23% Similarity=0.269 Sum_probs=35.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 289 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~ 289 (316)
...-+++.||.|.||+++||.+- +++..-.--+++|++|+.+.+-++
T Consensus 207 sr~p~ll~gptgagksflarriy-elk~arhq~sg~fvevncatlrgd 253 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIY-ELKQARHQFSGAFVEVNCATLRGD 253 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHH-HHHHHHHhcCCceEEEeeeeecCc
Confidence 34458999999999999999884 344444455679999998765443
No 468
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.07 E-value=0.0061 Score=47.62 Aligned_cols=25 Identities=20% Similarity=0.507 Sum_probs=22.2
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+.+.|++|+|||++++.++..+..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4788999999999999999997754
No 469
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.05 E-value=0.0084 Score=37.54 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.2
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..++.|++|+|||++.-++...+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4889999999999999999887765
No 470
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.05 E-value=0.0096 Score=47.37 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.2
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+.++|++|+|||++++.++..++.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~ 27 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGI 27 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCC
Confidence 3678999999999999999886544
No 471
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=96.04 E-value=0.0045 Score=47.46 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=27.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccC
Q 021192 252 PGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH 293 (316)
Q Consensus 252 pGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~ 293 (316)
||+|||++++.+|+.+.. +|+..+. .+.+..|.
T Consensus 1 ~GsGKStvg~~lA~~L~~-------~fiD~D~--~i~~~~g~ 33 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGR-------PFIDLDD--EIEERTGM 33 (158)
T ss_dssp TTSSHHHHHHHHHHHHTS-------EEEEHHH--HHHHHHTS
T ss_pred CCCcHHHHHHHHHHHhCC-------CccccCH--HHHHHhCC
Confidence 799999999999999999 8998876 34554553
No 472
>PRK04182 cytidylate kinase; Provisional
Probab=96.03 E-value=0.0061 Score=47.69 Aligned_cols=25 Identities=44% Similarity=0.691 Sum_probs=22.2
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+.+.|+||+|||++++.+++.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~ 26 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGL 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3678999999999999999998765
No 473
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.02 E-value=0.0046 Score=43.58 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=19.7
Q ss_pred CCCceeeecCCCCcHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILG 264 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la 264 (316)
....+.+.||+|+|||++++++.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34568899999999999999975
No 474
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.02 E-value=0.006 Score=49.52 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.5
Q ss_pred eeeecCCCCcHHHHHHHHHHHHh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~ 268 (316)
+.+.|++|+||||+++.|+..+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999885
No 475
>PTZ00301 uridine kinase; Provisional
Probab=96.01 E-value=0.0064 Score=48.88 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.0
Q ss_pred eeeecCCCCcHHHHHHHHHHHHh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~ 268 (316)
+.+.|+||+||||+|+.|++.+.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 55789999999999999988774
No 476
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.01 E-value=0.0054 Score=45.76 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.3
Q ss_pred eeeecCCCCcHHHHHHHHHHHHh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~ 268 (316)
+++.||+|+|||++++.+++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 56789999999999999998754
No 477
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.99 E-value=0.0068 Score=48.71 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=21.6
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
..+.-+++.||||+|||++++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35566778999999999999999764
No 478
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.99 E-value=0.015 Score=53.26 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=22.8
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
..+.-+++.|+||+|||++|+.++...
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~ 393 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPA 393 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHc
Confidence 456677889999999999999988764
No 479
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.98 E-value=0.02 Score=49.12 Aligned_cols=30 Identities=23% Similarity=0.301 Sum_probs=25.4
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
..+..+.|.||||+||||++..+|..+...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 356678899999999999999999988653
No 480
>PRK06761 hypothetical protein; Provisional
Probab=95.98 E-value=0.0056 Score=51.28 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=23.0
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
-+++.|+||+||||+++.++..+...
T Consensus 5 lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 47789999999999999999998753
No 481
>PRK08356 hypothetical protein; Provisional
Probab=95.98 E-value=0.0057 Score=48.72 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.5
Q ss_pred ceeeecCCCCcHHHHHHHHHH
Q 021192 245 HMAFLGNPGTGKTMVARILGR 265 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~ 265 (316)
-+.+.||||+||||+|+.|..
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999964
No 482
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.98 E-value=0.039 Score=47.75 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=42.8
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcC-CCCCCCeeeecc---ccccccc-----ccCchHHHHHHHHHhhcCCcEE
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG-ILPTDRVTEVQR---TDLVGEF-----VGHTGPKTRRRVGHLLSEITCL 312 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g-~~~~~~~~~~~~---~~~~~~~-----~g~~~~~~~~~~~~a~~~~~~~ 312 (316)
...++++.|++|+||||+.+++........ ++......|+.- .+.+.-+ .|.......++++.++-..|-.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 456799999999999999999988776410 110111111110 1111101 1233445677888887777777
Q ss_pred Eec
Q 021192 313 TFI 315 (316)
Q Consensus 313 ~f~ 315 (316)
|++
T Consensus 239 Iiv 241 (332)
T PRK13900 239 IIV 241 (332)
T ss_pred EEE
Confidence 664
No 483
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.97 E-value=0.0067 Score=47.04 Aligned_cols=24 Identities=46% Similarity=0.768 Sum_probs=21.5
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+.+.|+||+|||++|+.+++.+..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~ 26 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSL 26 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 678999999999999999998754
No 484
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.97 E-value=0.042 Score=48.22 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=40.5
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhc----CCCCCCCeeeecccccccc---------cccCchHHHHHHHHHhhc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV----GILPTDRVTEVQRTDLVGE---------FVGHTGPKTRRRVGHLLS 307 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~----g~~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~~~~a~~ 307 (316)
.+..+.|.||+|+||||++..||..+... +++..+++- +.+.+-... ++..+...+.+.++.+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R-iaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-IGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 45678999999999999999999888653 344444332 111111111 223456667777766653
No 485
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.96 E-value=0.014 Score=48.55 Aligned_cols=74 Identities=23% Similarity=0.329 Sum_probs=46.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCC----CCCCCeeeecccccccc----------------------cccCch
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI----LPTDRVTEVQRTDLVGE----------------------FVGHTG 295 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~----~~~~~~~~~~~~~~~~~----------------------~~g~~~ 295 (316)
.+..+-+.|+||+||||+.-.+.+++...|. +..+|.....+..++++ ..|.-+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 4455678999999999999999999987443 22233222222223222 455556
Q ss_pred HHHHHHHHHhhcCCcEEEec
Q 021192 296 PKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 296 ~~~~~~~~~a~~~~~~~~f~ 315 (316)
+.+++++........-+|+|
T Consensus 130 ~at~~~i~~ldAaG~DvIIV 149 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIV 149 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEE
Confidence 77777776665555545543
No 486
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.019 Score=50.18 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
....++|.||+|+|||+++..|+..+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445788999999999999999998753
No 487
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.95 E-value=0.047 Score=45.85 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=24.9
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
..+..+.|.||||+|||+++..+|..+...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 446678889999999999999998877654
No 488
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.95 E-value=0.0084 Score=46.68 Aligned_cols=26 Identities=35% Similarity=0.439 Sum_probs=22.4
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
+++.|+||+|||++++.++..+...|
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 57899999999999999998886543
No 489
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.92 E-value=0.011 Score=51.55 Aligned_cols=72 Identities=17% Similarity=0.118 Sum_probs=40.8
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh---cC--CCCCCCeeeeccccccc--ccccCc-----hHHHHHHHHHhhcCCcE
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM---VG--ILPTDRVTEVQRTDLVG--EFVGHT-----GPKTRRRVGHLLSEITC 311 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~---~g--~~~~~~~~~~~~~~~~~--~~~g~~-----~~~~~~~~~~a~~~~~~ 311 (316)
.-+++.||+|+||||+.+++.+.+.. .+ ++.-...++.....+-. .++.|. .....+.+..++...|-
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd 214 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPH 214 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCC
Confidence 44888999999999999999988742 11 22222222332222110 111121 12355666667777887
Q ss_pred EEec
Q 021192 312 LTFI 315 (316)
Q Consensus 312 ~~f~ 315 (316)
+|+|
T Consensus 215 ~i~v 218 (358)
T TIGR02524 215 AILV 218 (358)
T ss_pred EEee
Confidence 7765
No 490
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.91 E-value=0.0093 Score=52.23 Aligned_cols=71 Identities=15% Similarity=0.088 Sum_probs=40.7
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh----cCCCCCCCeeeeccc---cc---ccccccCchHHHHHHHHHhhcCCcEEEe
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM----VGILPTDRVTEVQRT---DL---VGEFVGHTGPKTRRRVGHLLSEITCLTF 314 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~----~g~~~~~~~~~~~~~---~~---~~~~~g~~~~~~~~~~~~a~~~~~~~~f 314 (316)
.+++.||+|+||||+.+++.+.... ..++.-...+|..-. .+ ...-+|.......+.+..|+-..|-+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 4788999999999999999887743 111111111111100 00 1112333333456677777777888877
Q ss_pred c
Q 021192 315 I 315 (316)
Q Consensus 315 ~ 315 (316)
|
T Consensus 231 v 231 (372)
T TIGR02525 231 V 231 (372)
T ss_pred e
Confidence 5
No 491
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.91 E-value=0.0087 Score=47.17 Aligned_cols=24 Identities=33% Similarity=0.299 Sum_probs=20.0
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+++.||||+|||+++..++.....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~ 25 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999888776543
No 492
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.90 E-value=0.0051 Score=50.29 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=22.1
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
...+-+.||||+|||+|.-.+...+..
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~ 55 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRE 55 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhh
Confidence 345668999999999999999998876
No 493
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=95.88 E-value=0.0097 Score=48.05 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=26.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~ 272 (316)
...-+++.|-|+.|||++|+.|.+.+.+.|+
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~ 41 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGV 41 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 3455788999999999999999999999886
No 494
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.87 E-value=0.0061 Score=47.79 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.1
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+++.||+|+|||++++.|++....
T Consensus 4 i~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEECCCCCCHHHHHHHHHccCcc
Confidence 678999999999999999986644
No 495
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.86 E-value=0.004 Score=46.79 Aligned_cols=56 Identities=23% Similarity=0.228 Sum_probs=34.7
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHH
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVG 303 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 303 (316)
..+++|.||+|+|||++|..+.+.-.. +..+..+.+.+.+ +++++.....++-.+|
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~g~~---lvaDD~v~v~~~~--~~l~~~~p~~l~g~iE 69 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKRGHR---LVADDRVVVKREG--GRLVGRAPEALKGLIE 69 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcCCe---EEECCEEEEEEEC--CEEEEeChHHhCCCcE
Confidence 457899999999999999877665321 2233344444333 5566666555544443
No 496
>COG0645 Predicted kinase [General function prediction only]
Probab=95.86 E-value=0.025 Score=43.06 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=22.0
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.++.|.||+|||++|+.+++.+..
T Consensus 4 ~l~~Gl~GsGKstlA~~l~~~lgA 27 (170)
T COG0645 4 VLVGGLPGSGKSTLARGLAELLGA 27 (170)
T ss_pred EEEecCCCccHhHHHHHHHhhcCc
Confidence 577899999999999999998886
No 497
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.84 E-value=0.013 Score=45.31 Aligned_cols=30 Identities=33% Similarity=0.340 Sum_probs=25.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
.+.-+.+.|++|+|||++++.+...+...|
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g 34 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARG 34 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcC
Confidence 344678899999999999999999887644
No 498
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.83 E-value=0.0088 Score=51.62 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=26.1
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
..+..++|+||+|+|||++|+.+|+.+...
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 456668999999999999999999999763
No 499
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.82 E-value=0.067 Score=47.70 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=25.7
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
..|..++|.|++|+||||++..+|..+...|
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G 128 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKG 128 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 4567788999999999999999998876533
No 500
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.80 E-value=0.005 Score=51.11 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=45.5
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLL 306 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~ 306 (316)
..+.+++.|+||+|||.+|-.+++.+...- ||..+.++++.+--...++.. .+.|..+.
T Consensus 65 aGraiLiaG~pgtGKtAiAmg~sksLG~~t-----pF~~i~gSEI~SlEmsKTEAl-tQAfRksi 123 (454)
T KOG2680|consen 65 AGRAILIAGQPGTGKTAIAMGMSKSLGDDT-----PFTSISGSEIYSLEMSKTEAL-TQAFRKSI 123 (454)
T ss_pred cceEEEEecCCCCCceeeeeehhhhhCCCC-----ceeeeecceeeeecccHHHHH-HHHHHHhh
Confidence 345688899999999999999999887622 899999999988766666653 44555543
Done!