Query 021192
Match_columns 316
No_of_seqs 330 out of 3731
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 14:06:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 100.0 1.1E-36 3.7E-41 236.7 16.6 158 14-182 5-162 (169)
2 4b93_B Ankyrin repeat domain-c 100.0 1.2E-34 4E-39 242.6 15.2 161 2-175 74-235 (269)
3 3twr_A Tankyrase-2; ankyrin re 100.0 7.3E-34 2.5E-38 220.5 16.4 160 9-179 4-163 (165)
4 3v30_A DNA-binding protein rfx 100.0 2.6E-33 9E-38 218.9 14.5 161 13-183 2-162 (172)
5 3f6q_A Integrin-linked protein 100.0 4.6E-33 1.6E-37 219.0 15.9 161 11-181 3-163 (179)
6 3v31_A Ankyrin repeat family A 100.0 4.7E-33 1.6E-37 216.4 15.6 159 12-181 2-160 (167)
7 2y1l_E Darpin-8.4; hydrolase-i 100.0 8.6E-33 2.9E-37 215.4 16.1 160 8-178 9-168 (169)
8 2rfm_A Putative ankyrin repeat 100.0 3E-33 1E-37 222.5 13.7 160 9-179 31-190 (192)
9 4gpm_A Engineered protein OR26 100.0 7.3E-33 2.5E-37 215.1 15.1 139 2-150 25-164 (169)
10 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.5E-32 5E-37 212.4 14.2 158 11-180 3-161 (162)
11 3aji_A 26S proteasome non-ATPa 100.0 8.7E-32 3E-36 220.2 16.8 165 8-183 35-199 (231)
12 2f8y_A Notch homolog 1, transl 100.0 7.1E-32 2.4E-36 219.6 16.1 171 3-183 13-185 (223)
13 1awc_B Protein (GA binding pro 100.0 6.4E-32 2.2E-36 206.9 14.9 151 13-175 2-152 (153)
14 1yyh_A HN1;, notch 1, ankyrin 100.0 3E-32 1E-36 226.2 14.1 170 3-183 45-217 (253)
15 2rfa_A Transient receptor pote 100.0 1.1E-31 3.8E-36 219.8 16.6 161 12-181 2-183 (232)
16 1bd8_A P19INK4D CDK4/6 inhibit 100.0 8.7E-32 3E-36 206.8 15.0 153 13-177 2-154 (156)
17 1oy3_D Transcription factor in 100.0 9E-32 3.1E-36 226.6 15.8 168 9-183 41-252 (282)
18 1ikn_D Protein (I-kappa-B-alph 100.0 9.9E-32 3.4E-36 220.7 15.5 167 9-182 41-210 (236)
19 3hra_A Ankyrin repeat family p 100.0 1.2E-31 4.1E-36 214.7 15.6 164 11-183 3-172 (201)
20 2rfa_A Transient receptor pote 100.0 1.2E-31 4E-36 219.7 15.6 168 4-182 27-223 (232)
21 1yyh_A HN1;, notch 1, ankyrin 100.0 5.3E-32 1.8E-36 224.8 13.6 167 2-178 78-245 (253)
22 2etb_A Transient receptor pote 100.0 1.8E-32 6.1E-37 228.0 10.1 167 9-184 39-249 (256)
23 2f8y_A Notch homolog 1, transl 100.0 2E-31 7E-36 216.9 15.6 168 3-180 47-215 (223)
24 3b7b_A Euchromatic histone-lys 100.0 5.3E-31 1.8E-35 216.4 18.1 170 3-183 33-204 (237)
25 3aji_A 26S proteasome non-ATPa 100.0 3.2E-31 1.1E-35 216.9 15.9 161 11-181 4-164 (231)
26 3hra_A Ankyrin repeat family p 100.0 3.5E-31 1.2E-35 212.0 15.1 163 6-178 31-200 (201)
27 4hbd_A KN motif and ankyrin re 100.0 1.7E-31 5.8E-36 224.5 13.7 160 9-178 107-272 (276)
28 2dzn_A Probable 26S proteasome 100.0 2.9E-31 1E-35 216.6 14.6 165 9-183 32-202 (228)
29 4b93_B Ankyrin repeat domain-c 100.0 1.6E-31 5.4E-36 223.6 10.9 165 9-183 48-212 (269)
30 2dzn_A Probable 26S proteasome 100.0 3.2E-30 1.1E-34 210.5 18.2 155 9-176 68-225 (228)
31 3d9h_A CDNA FLJ77766, highly s 100.0 2.1E-30 7.2E-35 218.9 17.6 168 3-183 81-249 (285)
32 1k1a_A B-cell lymphoma 3-encod 100.0 1.2E-30 4E-35 214.8 15.5 160 10-179 6-173 (241)
33 2xai_A ASB-9, ankyrin repeat a 100.0 1.2E-30 4.3E-35 217.5 15.8 159 12-182 2-160 (261)
34 1oy3_D Transcription factor in 100.0 4.1E-31 1.4E-35 222.5 12.7 165 9-183 5-219 (282)
35 1s70_B 130 kDa myosin-binding 100.0 2.5E-30 8.6E-35 219.8 17.7 164 9-183 36-259 (299)
36 2xai_A ASB-9, ankyrin repeat a 100.0 6.6E-31 2.3E-35 219.2 13.8 169 3-184 25-194 (261)
37 3b7b_A Euchromatic histone-lys 100.0 1.4E-30 4.8E-35 213.9 15.5 164 9-183 7-171 (237)
38 1k1a_A B-cell lymphoma 3-encod 100.0 1.4E-30 5E-35 214.2 15.6 174 4-184 36-211 (241)
39 3jxi_A Vanilloid receptor-rela 100.0 3.4E-31 1.2E-35 220.7 11.1 164 10-183 43-252 (260)
40 1ycs_B 53BP2, P53BP2; ankyrin 100.0 5E-31 1.7E-35 217.0 11.7 163 10-183 2-166 (239)
41 1sw6_A Regulatory protein SWI6 100.0 6.1E-31 2.1E-35 226.4 12.7 155 2-165 118-326 (327)
42 1bi7_B P16INK4A, MTS1, multipl 100.0 5.5E-31 1.9E-35 202.4 10.9 141 9-160 8-149 (156)
43 2etb_A Transient receptor pote 100.0 5.1E-31 1.8E-35 219.1 11.5 161 13-182 2-207 (256)
44 2pnn_A Transient receptor pote 100.0 8.1E-31 2.8E-35 220.0 12.8 162 9-180 50-257 (273)
45 3ljn_A Hypothetical protein; a 100.0 8.6E-31 2.9E-35 228.9 13.2 125 48-181 138-269 (364)
46 1s70_B 130 kDa myosin-binding 100.0 1.6E-30 5.3E-35 221.0 14.3 163 3-176 62-285 (299)
47 3d9h_A CDNA FLJ77766, highly s 100.0 6.3E-30 2.1E-34 216.0 16.7 161 9-181 55-215 (285)
48 2pnn_A Transient receptor pote 100.0 1.6E-30 5.3E-35 218.3 11.8 168 7-183 7-220 (273)
49 1ikn_D Protein (I-kappa-B-alph 100.0 3.4E-31 1.1E-35 217.6 6.7 164 9-182 4-177 (236)
50 3kea_A K1L; tropism, ANK repea 100.0 6.9E-31 2.4E-35 221.8 8.8 162 9-184 27-189 (285)
51 3t8k_A Uncharacterized protein 100.0 1.6E-30 5.4E-35 205.2 9.9 160 13-180 6-178 (186)
52 3kea_A K1L; tropism, ANK repea 100.0 2.8E-30 9.6E-35 218.1 12.2 172 2-186 52-225 (285)
53 1d9s_A Cyclin-dependent kinase 100.0 5.1E-30 1.8E-34 192.3 11.5 128 9-147 8-136 (136)
54 3ljn_A Hypothetical protein; a 100.0 5E-30 1.7E-34 224.1 12.3 167 10-183 17-238 (364)
55 2vge_A RELA-associated inhibit 100.0 4.9E-30 1.7E-34 209.5 10.5 147 9-165 17-166 (229)
56 1n11_A Ankyrin; clathrin, BAND 100.0 2.4E-29 8.4E-34 225.0 15.9 162 10-182 209-370 (437)
57 1n11_A Ankyrin; clathrin, BAND 100.0 2.3E-29 8E-34 225.1 15.6 164 3-177 234-398 (437)
58 3utm_A Tankyrase-1; tankyrase, 100.0 2.6E-29 9E-34 217.9 14.7 99 9-113 54-152 (351)
59 3v30_A DNA-binding protein rfx 100.0 2E-29 7E-34 196.7 12.6 140 9-158 32-171 (172)
60 3lvq_E ARF-GAP with SH3 domain 100.0 5.4E-29 1.9E-33 225.9 17.1 130 12-151 131-269 (497)
61 1wdy_A 2-5A-dependent ribonucl 100.0 5.3E-29 1.8E-33 209.7 15.6 168 3-181 61-245 (285)
62 2fo1_E LIN-12 protein; beta-ba 100.0 1.6E-29 5.6E-34 221.4 12.9 171 2-183 154-340 (373)
63 3jxi_A Vanilloid receptor-rela 100.0 1.4E-29 4.8E-34 210.9 11.0 169 10-182 2-211 (260)
64 2fo1_E LIN-12 protein; beta-ba 100.0 1.3E-29 4.5E-34 222.0 11.0 170 2-181 187-371 (373)
65 1ycs_B 53BP2, P53BP2; ankyrin 100.0 2.5E-29 8.6E-34 206.8 11.6 157 1-167 25-193 (239)
66 3utm_A Tankyrase-1; tankyrase, 100.0 8.4E-29 2.9E-33 214.7 15.4 132 11-151 22-153 (351)
67 1d9s_A Cyclin-dependent kinase 100.0 1.6E-29 5.4E-34 189.6 9.3 134 36-180 1-135 (136)
68 1wdy_A 2-5A-dependent ribonucl 100.0 2.9E-28 9.8E-33 205.2 17.7 161 10-180 36-210 (285)
69 4g8k_A 2-5A-dependent ribonucl 100.0 5.9E-29 2E-33 215.0 13.8 159 10-183 165-328 (337)
70 2jab_A H10-2-G3; HER2, darpin, 100.0 1.7E-28 5.8E-33 184.0 13.5 127 9-145 10-136 (136)
71 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.5E-28 1.2E-32 187.8 14.4 135 2-147 26-162 (162)
72 3eu9_A Huntingtin-interacting 100.0 3.3E-28 1.1E-32 199.7 14.9 171 3-183 31-204 (240)
73 3eu9_A Huntingtin-interacting 100.0 4.1E-28 1.4E-32 199.1 15.2 164 9-182 5-169 (240)
74 1n0r_A 4ANK, 4 ankyrin repeats 100.0 5.5E-28 1.9E-32 178.4 14.1 126 12-147 1-126 (126)
75 4g8k_A 2-5A-dependent ribonucl 100.0 2.9E-28 9.9E-33 210.7 13.9 175 5-188 116-305 (337)
76 1awc_B Protein (GA binding pro 100.0 8.7E-28 3E-32 183.8 14.1 129 3-141 24-152 (153)
77 3f6q_A Integrin-linked protein 100.0 5.4E-28 1.8E-32 189.9 13.2 137 9-155 35-171 (179)
78 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.6E-27 5.5E-32 185.4 15.1 133 3-145 36-169 (169)
79 3c5r_A BARD-1, BRCA1-associate 100.0 6.4E-28 2.2E-32 181.1 11.4 126 42-177 5-130 (137)
80 3c5r_A BARD-1, BRCA1-associate 99.9 2.8E-28 9.7E-33 183.0 9.0 133 4-146 1-133 (137)
81 3twr_A Tankyrase-2; ankyrin re 99.9 2.3E-27 8E-32 183.7 13.4 127 9-146 38-164 (165)
82 3v31_A Ankyrin repeat family A 99.9 2.7E-27 9.3E-32 183.7 11.5 136 4-149 26-162 (167)
83 2jab_A H10-2-G3; HER2, darpin, 99.9 2.1E-27 7.1E-32 178.0 10.0 123 48-179 14-136 (136)
84 2rfm_A Putative ankyrin repeat 99.9 4.8E-27 1.7E-31 186.6 12.3 132 4-145 58-190 (192)
85 3ehr_A Osteoclast-stimulating 99.9 1.5E-27 5E-32 194.0 9.3 137 10-155 70-206 (222)
86 2b0o_E UPLC1; arfgap, structur 99.9 5.4E-27 1.9E-31 199.0 12.6 139 12-166 150-297 (301)
87 3aaa_C Myotrophin, protein V-1 99.9 1.1E-26 3.7E-31 171.0 11.8 106 48-161 7-112 (123)
88 3aaa_C Myotrophin, protein V-1 99.9 1.3E-26 4.3E-31 170.6 12.2 111 10-126 4-114 (123)
89 2vge_A RELA-associated inhibit 99.9 2E-26 6.8E-31 188.1 13.9 147 30-185 2-152 (229)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.1E-26 3.8E-31 171.3 10.9 125 47-180 1-125 (126)
91 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.9E-26 1.7E-30 174.5 14.3 124 9-144 32-155 (156)
92 1bi7_B P16INK4A, MTS1, multipl 99.9 2.4E-27 8.1E-32 182.0 6.9 129 48-186 12-141 (156)
93 4hbd_A KN motif and ankyrin re 99.9 1E-27 3.5E-32 201.4 4.6 161 13-183 76-244 (276)
94 3t8k_A Uncharacterized protein 99.9 5.2E-27 1.8E-31 185.0 7.6 132 11-152 36-184 (186)
95 3deo_A Signal recognition part 99.9 1.7E-26 5.8E-31 182.0 9.6 139 10-177 41-180 (183)
96 3ui2_A Signal recognition part 99.9 2.6E-26 8.8E-31 189.3 10.3 140 10-178 42-182 (244)
97 1sw6_A Regulatory protein SWI6 99.9 4.5E-27 1.5E-31 202.3 5.1 162 15-183 99-310 (327)
98 3ehr_A Osteoclast-stimulating 99.9 1.2E-25 4.2E-30 182.7 9.9 128 48-184 73-201 (222)
99 1n0q_A 3ANK, 3 ankyrin repeats 99.9 6.4E-25 2.2E-29 153.2 11.0 92 48-147 2-93 (93)
100 3jue_A Arfgap with coiled-coil 99.9 8.9E-25 3E-29 189.6 13.3 140 13-162 199-344 (368)
101 1dcq_A PYK2-associated protein 99.9 1.7E-24 5.9E-29 181.6 14.5 124 14-147 131-263 (278)
102 2aja_A Ankyrin repeat family p 99.9 7.9E-26 2.7E-30 196.9 2.9 158 11-185 90-254 (376)
103 2l6b_A NR1C; ankyrin, consensu 99.9 8.7E-25 3E-29 158.7 7.9 108 43-159 5-112 (115)
104 3deo_A Signal recognition part 99.9 6.9E-25 2.4E-29 172.8 7.8 108 48-164 44-152 (183)
105 3ui2_A Signal recognition part 99.9 3.9E-24 1.3E-28 176.3 9.5 140 11-164 13-153 (244)
106 1n0q_A 3ANK, 3 ankyrin repeats 99.9 4.6E-23 1.6E-27 143.7 11.3 93 12-110 1-93 (93)
107 1dcq_A PYK2-associated protein 99.9 1.4E-22 4.8E-27 169.9 15.4 162 9-180 62-262 (278)
108 2l6b_A NR1C; ankyrin, consensu 99.9 2.6E-23 8.9E-28 150.9 8.6 109 8-122 4-112 (115)
109 3jue_A Arfgap with coiled-coil 99.9 9.2E-23 3.1E-27 176.9 11.9 123 48-179 199-324 (368)
110 2b0o_E UPLC1; arfgap, structur 99.9 1.7E-22 5.8E-27 171.3 12.6 124 49-181 152-284 (301)
111 3lvq_E ARF-GAP with SH3 domain 99.9 9.8E-23 3.4E-27 184.8 10.9 128 48-184 132-268 (497)
112 2aja_A Ankyrin repeat family p 99.9 3.3E-23 1.1E-27 180.4 0.7 153 14-181 66-224 (376)
113 4b4t_J 26S protease regulatory 99.8 8.3E-21 2.8E-25 163.5 9.9 103 202-315 144-247 (405)
114 2zgd_A 3 repeat synthetic anky 99.8 1E-20 3.5E-25 135.9 8.6 86 48-141 24-109 (110)
115 2zgd_A 3 repeat synthetic anky 99.8 1.1E-19 3.6E-24 130.6 10.4 93 6-104 17-109 (110)
116 4b4t_I 26S protease regulatory 99.8 4.9E-20 1.7E-24 159.1 9.7 103 202-315 178-281 (437)
117 4b4t_H 26S protease regulatory 99.8 6.7E-20 2.3E-24 159.8 9.0 102 203-315 206-308 (467)
118 4b4t_L 26S protease subunit RP 99.8 1.8E-19 6E-24 157.8 10.3 103 202-315 177-280 (437)
119 4b4t_K 26S protease regulatory 99.8 2.6E-19 9.1E-24 156.4 10.4 103 202-315 168-271 (428)
120 4b4t_M 26S protease regulatory 99.8 1.4E-19 4.8E-24 158.2 8.6 103 202-315 177-280 (434)
121 3cf2_A TER ATPase, transitiona 99.7 1.4E-17 4.8E-22 155.7 4.2 102 204-315 475-576 (806)
122 3cf2_A TER ATPase, transitiona 99.7 2.2E-17 7.6E-22 154.4 4.6 102 203-315 201-303 (806)
123 3cf0_A Transitional endoplasmi 99.5 1.4E-14 5E-19 122.5 8.8 102 203-315 12-114 (301)
124 2ce7_A Cell division protein F 99.5 2.1E-14 7.3E-19 127.6 10.2 102 203-315 13-114 (476)
125 1xwi_A SKD1 protein; VPS4B, AA 99.5 2.7E-14 9.1E-19 121.9 10.4 102 203-315 9-111 (322)
126 3eie_A Vacuolar protein sortin 99.5 3.4E-14 1.2E-18 121.4 9.0 102 203-315 15-116 (322)
127 3syl_A Protein CBBX; photosynt 99.5 2.7E-13 9.1E-18 115.3 13.9 115 197-315 21-136 (309)
128 1lv7_A FTSH; alpha/beta domain 99.5 6.2E-14 2.1E-18 116.0 9.3 102 203-315 9-110 (257)
129 2x8a_A Nuclear valosin-contain 99.5 8.2E-14 2.8E-18 116.0 8.9 103 202-315 6-109 (274)
130 2qz4_A Paraplegin; AAA+, SPG7, 99.5 1E-13 3.4E-18 115.0 8.0 101 204-315 4-104 (262)
131 2qp9_X Vacuolar protein sortin 99.5 1.3E-13 4.5E-18 119.2 8.8 102 203-315 48-149 (355)
132 3h4m_A Proteasome-activating n 99.4 4.1E-13 1.4E-17 112.8 9.6 101 204-315 15-116 (285)
133 3hu3_A Transitional endoplasmi 99.4 4.6E-13 1.6E-17 120.0 8.4 101 204-315 202-303 (489)
134 2zan_A Vacuolar protein sortin 99.4 3.3E-13 1.1E-17 120.1 7.1 102 203-315 131-233 (444)
135 3t15_A Ribulose bisphosphate c 99.4 5.4E-13 1.8E-17 112.3 7.9 70 239-315 32-105 (293)
136 2r62_A Cell division protease 99.4 1.3E-13 4.5E-18 114.8 3.6 101 204-315 9-109 (268)
137 2c9o_A RUVB-like 1; hexameric 99.4 3.8E-13 1.3E-17 120.3 6.8 95 204-315 35-132 (456)
138 2dhr_A FTSH; AAA+ protein, hex 99.4 5.1E-13 1.7E-17 119.5 6.2 102 203-315 28-129 (499)
139 3b9p_A CG5977-PA, isoform A; A 99.3 2.5E-12 8.6E-17 108.6 9.3 102 203-315 18-119 (297)
140 3vfd_A Spastin; ATPase, microt 99.3 2.5E-12 8.5E-17 112.8 9.0 101 204-315 113-213 (389)
141 3d8b_A Fidgetin-like protein 1 99.3 3.1E-12 1.1E-16 110.7 8.6 102 203-315 81-182 (357)
142 1ixz_A ATP-dependent metallopr 99.3 9.2E-12 3.1E-16 102.7 9.9 102 203-315 13-114 (254)
143 1iy2_A ATP-dependent metallopr 99.2 3E-11 1E-15 101.0 10.1 102 203-315 37-138 (278)
144 1ypw_A Transitional endoplasmi 99.2 1.1E-12 3.6E-17 124.8 0.2 101 205-315 476-576 (806)
145 1ypw_A Transitional endoplasmi 99.2 1.7E-11 5.8E-16 116.5 5.4 103 203-315 201-303 (806)
146 3hws_A ATP-dependent CLP prote 99.1 1.1E-10 3.7E-15 101.4 8.1 107 201-315 9-122 (363)
147 1g41_A Heat shock protein HSLU 99.1 1.3E-09 4.4E-14 95.6 11.8 98 200-307 8-109 (444)
148 3pxg_A Negative regulator of g 98.9 2.8E-09 9.6E-14 95.4 6.5 93 204-315 178-273 (468)
149 1d2n_A N-ethylmaleimide-sensit 98.8 6.6E-09 2.2E-13 86.4 7.7 65 241-315 62-130 (272)
150 1ofh_A ATP-dependent HSL prote 98.8 1.3E-08 4.6E-13 86.1 7.9 106 200-315 8-122 (310)
151 3pxi_A Negative regulator of g 98.8 6.4E-09 2.2E-13 98.8 6.5 93 204-315 178-273 (758)
152 1um8_A ATP-dependent CLP prote 98.8 2.4E-08 8.3E-13 87.0 9.5 110 199-315 13-143 (376)
153 1jbk_A CLPB protein; beta barr 98.7 2.6E-08 8.8E-13 77.9 6.5 96 204-315 20-121 (195)
154 2p65_A Hypothetical protein PF 98.7 1.9E-08 6.4E-13 78.3 5.3 74 242-315 42-121 (187)
155 3uk6_A RUVB-like 2; hexameric 98.7 2.8E-08 9.5E-13 86.3 6.5 65 205-285 43-107 (368)
156 3m6a_A ATP-dependent protease 98.7 4.7E-08 1.6E-12 89.0 8.2 92 206-315 81-181 (543)
157 1qvr_A CLPB protein; coiled co 98.6 5.2E-08 1.8E-12 93.7 8.5 96 204-315 168-269 (854)
158 1sxj_A Activator 1 95 kDa subu 98.6 2.3E-08 7.9E-13 90.7 3.9 104 204-315 37-154 (516)
159 3pvs_A Replication-associated 98.6 1.1E-07 3.7E-12 84.4 7.9 83 203-315 23-112 (447)
160 1r6b_X CLPA protein; AAA+, N-t 98.5 2E-07 6.7E-12 88.7 9.3 96 204-315 184-284 (758)
161 3cmw_A Protein RECA, recombina 98.5 1.7E-07 5.9E-12 94.2 8.4 115 199-315 1013-1166(1706)
162 3pfi_A Holliday junction ATP-d 98.5 3.6E-07 1.2E-11 78.3 9.1 86 204-315 27-112 (338)
163 3te6_A Regulatory protein SIR3 98.5 8.5E-07 2.9E-11 74.6 11.0 75 241-315 43-138 (318)
164 3n70_A Transport activator; si 98.5 2.6E-07 8.9E-12 68.9 6.2 56 242-308 23-78 (145)
165 3co5_A Putative two-component 98.4 1.2E-07 4.2E-12 70.6 3.7 52 242-308 26-77 (143)
166 3u61_B DNA polymerase accessor 98.4 8E-07 2.7E-11 75.7 8.0 83 204-315 24-111 (324)
167 4fcw_A Chaperone protein CLPB; 98.3 1.5E-06 5.2E-11 73.4 9.0 76 200-286 10-86 (311)
168 3pxi_A Negative regulator of g 98.3 9.7E-07 3.3E-11 83.9 8.5 66 242-315 520-585 (758)
169 1hqc_A RUVB; extended AAA-ATPa 98.3 1.8E-06 6E-11 73.5 8.4 87 204-315 10-96 (324)
170 1r6b_X CLPA protein; AAA+, N-t 98.3 1.1E-06 3.9E-11 83.5 7.3 50 232-288 477-526 (758)
171 1l8q_A Chromosomal replication 98.2 4.6E-07 1.6E-11 77.2 3.3 69 242-315 36-104 (324)
172 1sxj_B Activator 1 37 kDa subu 98.2 5.5E-06 1.9E-10 70.3 9.4 88 204-315 19-113 (323)
173 1qvr_A CLPB protein; coiled co 98.2 5.5E-06 1.9E-10 79.7 9.2 43 242-288 587-629 (854)
174 2chg_A Replication factor C sm 98.1 1.2E-05 4.1E-10 64.0 9.2 49 205-269 16-64 (226)
175 2z4s_A Chromosomal replication 98.1 1.2E-06 4E-11 77.8 2.9 71 243-315 130-200 (440)
176 2v1u_A Cell division control p 98.1 1.2E-05 4.1E-10 69.9 8.8 73 241-315 42-136 (387)
177 2chq_A Replication factor C sm 98.1 3.5E-06 1.2E-10 71.3 5.2 65 204-286 15-79 (319)
178 2qby_B CDC6 homolog 3, cell di 98.1 1.5E-05 5.3E-10 69.2 9.3 68 206-285 20-91 (384)
179 1sxj_C Activator 1 40 kDa subu 98.1 2.4E-05 8.2E-10 66.9 10.3 50 204-269 23-72 (340)
180 1in4_A RUVB, holliday junction 98.0 2.5E-05 8.5E-10 66.7 10.0 28 242-269 50-77 (334)
181 3nbx_X ATPase RAVA; AAA+ ATPas 98.0 9.6E-07 3.3E-11 79.1 0.9 86 206-315 22-115 (500)
182 1iqp_A RFCS; clamp loader, ext 98.0 1.5E-05 5.2E-10 67.6 7.5 50 204-269 23-72 (327)
183 1sxj_D Activator 1 41 kDa subu 98.0 8.5E-06 2.9E-10 70.0 6.0 66 204-286 35-100 (353)
184 1njg_A DNA polymerase III subu 98.0 4.1E-05 1.4E-09 61.7 9.6 50 205-269 22-71 (250)
185 1tue_A Replication protein E1; 97.9 3.4E-05 1.2E-09 60.0 7.6 26 244-269 59-84 (212)
186 3ec2_A DNA replication protein 97.9 8.1E-06 2.8E-10 63.1 4.1 27 242-268 37-63 (180)
187 1sxj_E Activator 1 40 kDa subu 97.9 2.2E-05 7.6E-10 67.5 7.2 50 204-268 12-61 (354)
188 1jr3_A DNA polymerase III subu 97.8 4E-05 1.4E-09 66.3 8.1 50 205-269 15-64 (373)
189 2bjv_A PSP operon transcriptio 97.8 2.9E-05 1E-09 63.9 6.4 64 205-286 5-68 (265)
190 1ojl_A Transcriptional regulat 97.8 1.4E-05 4.9E-10 67.2 4.5 41 242-286 24-64 (304)
191 2r44_A Uncharacterized protein 97.8 1.5E-05 5.2E-10 67.9 4.5 47 205-269 26-72 (331)
192 1u0j_A DNA replication protein 97.8 3.4E-05 1.2E-09 62.8 5.9 30 243-272 104-133 (267)
193 2w58_A DNAI, primosome compone 97.7 1.7E-05 5.8E-10 62.4 3.7 43 243-289 54-96 (202)
194 2qby_A CDC6 homolog 1, cell di 97.7 6.2E-05 2.1E-09 65.3 7.5 29 241-269 43-71 (386)
195 2gno_A DNA polymerase III, gam 97.7 0.00016 5.4E-09 60.7 9.6 67 243-315 18-88 (305)
196 1fnn_A CDC6P, cell division co 97.7 0.00014 4.9E-09 63.1 9.6 66 206-284 17-82 (389)
197 2qgz_A Helicase loader, putati 97.7 1.9E-05 6.6E-10 66.5 3.6 44 243-290 152-196 (308)
198 3bos_A Putative DNA replicatio 97.6 7.6E-05 2.6E-09 60.2 5.7 29 242-270 51-79 (242)
199 1qhx_A CPT, protein (chloramph 97.6 8.2E-05 2.8E-09 57.1 5.4 26 244-269 4-29 (178)
200 2kjq_A DNAA-related protein; s 97.5 8.5E-05 2.9E-09 55.3 4.8 29 243-271 36-64 (149)
201 2vhj_A Ntpase P4, P4; non- hyd 97.5 0.00016 5.6E-09 60.4 6.4 65 244-315 124-188 (331)
202 1a5t_A Delta prime, HOLB; zinc 97.5 0.00055 1.9E-08 58.3 9.8 29 242-270 23-51 (334)
203 3vaa_A Shikimate kinase, SK; s 97.5 8.7E-05 3E-09 58.2 4.0 29 241-269 23-51 (199)
204 1g8p_A Magnesium-chelatase 38 97.4 7.3E-05 2.5E-09 64.1 3.6 26 244-269 46-71 (350)
205 1gvn_B Zeta; postsegregational 97.4 0.00043 1.5E-08 57.6 7.3 28 241-268 31-58 (287)
206 3trf_A Shikimate kinase, SK; a 97.3 0.00014 4.7E-09 56.2 3.6 27 243-269 5-31 (185)
207 2p5t_B PEZT; postsegregational 97.3 0.00091 3.1E-08 54.5 8.6 28 241-268 30-57 (253)
208 1y63_A LMAJ004144AAA protein; 97.2 0.00021 7.3E-09 55.2 3.6 29 241-269 8-37 (184)
209 2ga8_A Hypothetical 39.9 kDa p 97.2 0.00023 7.8E-09 60.4 3.9 28 242-269 23-50 (359)
210 3cmu_A Protein RECA, recombina 97.2 0.0004 1.4E-08 71.3 5.8 73 241-315 1425-1511(2050)
211 2cdn_A Adenylate kinase; phosp 97.1 0.00037 1.3E-08 54.6 4.4 28 242-269 19-46 (201)
212 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.0012 4.2E-08 54.0 7.5 29 243-271 4-32 (260)
213 3kb2_A SPBC2 prophage-derived 97.1 0.00031 1.1E-08 53.4 3.7 25 245-269 3-27 (173)
214 3iij_A Coilin-interacting nucl 97.1 0.00034 1.2E-08 53.8 3.9 28 242-269 10-37 (180)
215 2iyv_A Shikimate kinase, SK; t 97.1 0.00032 1.1E-08 54.1 3.8 25 245-269 4-28 (184)
216 1via_A Shikimate kinase; struc 97.1 0.00027 9.3E-09 54.1 3.4 25 245-269 6-30 (175)
217 2ze6_A Isopentenyl transferase 97.1 0.0015 5E-08 53.3 7.8 24 246-269 4-27 (253)
218 1zuh_A Shikimate kinase; alpha 97.1 0.00033 1.1E-08 53.1 3.7 34 242-282 6-39 (168)
219 2rhm_A Putative kinase; P-loop 97.1 0.00035 1.2E-08 54.2 3.7 28 242-269 4-31 (193)
220 3umf_A Adenylate kinase; rossm 97.0 0.00055 1.9E-08 54.2 4.6 28 242-269 28-55 (217)
221 1aky_A Adenylate kinase; ATP:A 97.0 0.00036 1.2E-08 55.6 3.5 28 242-269 3-30 (220)
222 3k1j_A LON protease, ATP-depen 97.0 0.00058 2E-08 63.0 5.2 49 203-269 38-86 (604)
223 1nn5_A Similar to deoxythymidy 97.0 0.00055 1.9E-08 54.1 4.4 31 242-272 8-38 (215)
224 1nks_A Adenylate kinase; therm 97.0 0.00044 1.5E-08 53.6 3.8 27 245-271 3-29 (194)
225 3t61_A Gluconokinase; PSI-biol 97.0 0.00063 2.1E-08 53.3 4.6 27 243-269 18-44 (202)
226 1kag_A SKI, shikimate kinase I 97.0 0.00045 1.5E-08 52.6 3.7 26 244-269 5-30 (173)
227 3tlx_A Adenylate kinase 2; str 97.0 0.00083 2.8E-08 54.4 5.0 28 242-269 28-55 (243)
228 1zp6_A Hypothetical protein AT 97.0 0.0003 1E-08 54.6 2.3 25 242-266 8-32 (191)
229 4eun_A Thermoresistant glucoki 96.9 0.00061 2.1E-08 53.4 3.9 28 241-268 27-54 (200)
230 2c95_A Adenylate kinase 1; tra 96.9 0.00051 1.7E-08 53.4 3.4 28 242-269 8-35 (196)
231 3uie_A Adenylyl-sulfate kinase 96.9 0.00066 2.2E-08 53.2 4.0 30 242-271 24-53 (200)
232 3sr0_A Adenylate kinase; phosp 96.9 0.00049 1.7E-08 54.2 3.2 25 245-269 2-26 (206)
233 1ak2_A Adenylate kinase isoenz 96.9 0.00063 2.1E-08 54.7 3.8 28 242-269 15-42 (233)
234 1e6c_A Shikimate kinase; phosp 96.9 0.00065 2.2E-08 51.7 3.5 25 245-269 4-28 (173)
235 1ly1_A Polynucleotide kinase; 96.9 0.0005 1.7E-08 52.6 2.9 22 244-265 3-24 (181)
236 2wwf_A Thymidilate kinase, put 96.9 0.00099 3.4E-08 52.5 4.7 30 242-271 9-38 (212)
237 1zak_A Adenylate kinase; ATP:A 96.9 0.00051 1.7E-08 54.8 2.9 28 242-269 4-31 (222)
238 2vli_A Antibiotic resistance p 96.9 0.00051 1.7E-08 52.8 2.8 27 243-269 5-31 (183)
239 1kht_A Adenylate kinase; phosp 96.9 0.00075 2.6E-08 52.2 3.8 27 244-270 4-30 (192)
240 1tev_A UMP-CMP kinase; ploop, 96.9 0.00051 1.7E-08 53.3 2.8 26 244-269 4-29 (196)
241 3fb4_A Adenylate kinase; psych 96.9 0.00066 2.3E-08 53.8 3.5 25 245-269 2-26 (216)
242 3dl0_A Adenylate kinase; phosp 96.8 0.00058 2E-08 54.1 3.2 25 245-269 2-26 (216)
243 1qf9_A UMP/CMP kinase, protein 96.8 0.00065 2.2E-08 52.6 3.3 27 243-269 6-32 (194)
244 2bwj_A Adenylate kinase 5; pho 96.8 0.00065 2.2E-08 52.9 3.3 27 243-269 12-38 (199)
245 2pt5_A Shikimate kinase, SK; a 96.8 0.00084 2.9E-08 50.8 3.7 25 245-269 2-26 (168)
246 2yvu_A Probable adenylyl-sulfa 96.8 0.0011 3.6E-08 51.2 4.3 29 242-270 12-40 (186)
247 1knq_A Gluconate kinase; ALFA/ 96.8 0.00093 3.2E-08 51.0 3.9 26 243-268 8-33 (175)
248 3cm0_A Adenylate kinase; ATP-b 96.8 0.00061 2.1E-08 52.5 2.9 26 244-269 5-30 (186)
249 1w5s_A Origin recognition comp 96.8 0.0017 6E-08 56.7 6.1 28 242-269 49-78 (412)
250 1ukz_A Uridylate kinase; trans 96.8 0.00068 2.3E-08 53.1 3.1 28 242-269 14-41 (203)
251 1zd8_A GTP:AMP phosphotransfer 96.8 0.00062 2.1E-08 54.4 2.9 28 242-269 6-33 (227)
252 3lw7_A Adenylate kinase relate 96.8 0.00067 2.3E-08 51.6 3.0 24 245-269 3-26 (179)
253 1ye8_A Protein THEP1, hypothet 96.8 0.00093 3.2E-08 51.3 3.6 24 245-268 2-25 (178)
254 4akg_A Glutathione S-transfera 96.8 0.0011 3.8E-08 70.2 5.2 60 244-315 1268-1342(2695)
255 2plr_A DTMP kinase, probable t 96.7 0.00093 3.2E-08 52.6 3.6 28 244-271 5-32 (213)
256 3be4_A Adenylate kinase; malar 96.7 0.00086 2.9E-08 53.2 3.2 26 244-269 6-31 (217)
257 1e4v_A Adenylate kinase; trans 96.7 0.0011 3.8E-08 52.5 3.4 25 245-269 2-26 (214)
258 1jjv_A Dephospho-COA kinase; P 96.6 0.0014 4.9E-08 51.4 3.9 21 245-265 4-24 (206)
259 2bbw_A Adenylate kinase 4, AK4 96.6 0.0013 4.4E-08 53.3 3.6 27 243-269 27-53 (246)
260 2pbr_A DTMP kinase, thymidylat 96.6 0.0016 5.6E-08 50.4 3.9 26 246-271 3-28 (195)
261 2qor_A Guanylate kinase; phosp 96.6 0.0014 4.9E-08 51.4 3.5 28 241-268 10-37 (204)
262 2z0h_A DTMP kinase, thymidylat 96.6 0.0017 5.9E-08 50.4 3.9 27 246-272 3-29 (197)
263 3zvl_A Bifunctional polynucleo 96.5 0.0026 9.1E-08 55.8 5.4 29 241-269 256-284 (416)
264 2pez_A Bifunctional 3'-phospho 96.5 0.0023 7.8E-08 49.0 4.1 29 243-271 5-33 (179)
265 2jaq_A Deoxyguanosine kinase; 96.5 0.0017 5.9E-08 50.7 3.4 25 245-269 2-26 (205)
266 1cke_A CK, MSSA, protein (cyti 96.5 0.0019 6.4E-08 51.5 3.7 25 244-268 6-30 (227)
267 1htw_A HI0065; nucleotide-bind 96.5 0.002 6.7E-08 48.3 3.5 34 242-275 32-65 (158)
268 3c8u_A Fructokinase; YP_612366 96.4 0.0019 6.4E-08 50.9 3.5 29 241-269 20-48 (208)
269 2if2_A Dephospho-COA kinase; a 96.4 0.0035 1.2E-07 49.0 5.1 22 245-267 3-24 (204)
270 3r20_A Cytidylate kinase; stru 96.4 0.0022 7.6E-08 51.3 3.9 28 242-269 8-35 (233)
271 2xb4_A Adenylate kinase; ATP-b 96.4 0.0018 6.2E-08 51.6 3.3 25 245-269 2-26 (223)
272 2r2a_A Uncharacterized protein 96.4 0.0024 8.1E-08 49.9 3.9 25 243-267 5-29 (199)
273 2bdt_A BH3686; alpha-beta prot 96.4 0.0017 5.8E-08 50.2 3.1 22 246-267 5-26 (189)
274 3tau_A Guanylate kinase, GMP k 96.4 0.0024 8.1E-08 50.3 3.9 27 242-268 7-33 (208)
275 2j41_A Guanylate kinase; GMP, 96.4 0.0022 7.5E-08 50.2 3.7 26 242-267 5-30 (207)
276 2qt1_A Nicotinamide riboside k 96.4 0.00073 2.5E-08 53.2 0.9 38 241-278 19-56 (207)
277 2axn_A 6-phosphofructo-2-kinas 96.4 0.0069 2.4E-07 54.7 7.3 29 243-271 35-63 (520)
278 3tr0_A Guanylate kinase, GMP k 96.4 0.0025 8.7E-08 49.8 3.9 25 243-267 7-31 (205)
279 1kgd_A CASK, peripheral plasma 96.4 0.0023 7.8E-08 49.1 3.5 25 244-268 6-30 (180)
280 1z6g_A Guanylate kinase; struc 96.4 0.0022 7.7E-08 50.9 3.5 27 241-267 21-47 (218)
281 3crm_A TRNA delta(2)-isopenten 96.4 0.0016 5.6E-08 54.6 2.7 26 244-269 6-31 (323)
282 3nwj_A ATSK2; P loop, shikimat 96.3 0.0024 8.1E-08 51.8 3.6 27 243-269 48-74 (250)
283 1lvg_A Guanylate kinase, GMP k 96.3 0.0025 8.5E-08 49.8 3.6 26 243-268 4-29 (198)
284 3a00_A Guanylate kinase, GMP k 96.3 0.0022 7.7E-08 49.4 3.3 24 245-268 3-26 (186)
285 2grj_A Dephospho-COA kinase; T 96.3 0.0022 7.6E-08 49.8 3.2 24 246-269 15-38 (192)
286 1svm_A Large T antigen; AAA+ f 96.3 0.0026 9E-08 54.8 3.9 29 241-269 167-195 (377)
287 2v54_A DTMP kinase, thymidylat 96.3 0.0021 7.1E-08 50.3 3.0 25 243-267 4-28 (204)
288 3f9v_A Minichromosome maintena 96.3 0.00078 2.7E-08 61.9 0.3 27 243-269 327-353 (595)
289 3asz_A Uridine kinase; cytidin 96.2 0.0027 9.2E-08 50.0 3.3 36 242-277 5-41 (211)
290 3tqc_A Pantothenate kinase; bi 96.2 0.011 3.8E-07 49.7 6.9 28 241-268 90-117 (321)
291 1m7g_A Adenylylsulfate kinase; 96.1 0.0034 1.2E-07 49.5 3.5 27 242-268 24-50 (211)
292 3ney_A 55 kDa erythrocyte memb 96.1 0.0042 1.4E-07 48.3 3.7 27 242-268 18-44 (197)
293 2jeo_A Uridine-cytidine kinase 96.1 0.0037 1.3E-07 50.6 3.4 28 241-268 23-50 (245)
294 1uj2_A Uridine-cytidine kinase 96.1 0.0033 1.1E-07 51.0 3.1 28 242-269 21-48 (252)
295 3b9q_A Chloroplast SRP recepto 96.0 0.011 3.7E-07 49.4 6.2 31 239-269 96-126 (302)
296 3ake_A Cytidylate kinase; CMP 96.0 0.0042 1.4E-07 48.6 3.5 25 245-269 4-28 (208)
297 1uf9_A TT1252 protein; P-loop, 96.0 0.0033 1.1E-07 49.0 2.9 25 242-266 7-31 (203)
298 1zu4_A FTSY; GTPase, signal re 96.0 0.02 6.9E-07 48.2 7.6 34 236-269 98-131 (320)
299 4e22_A Cytidylate kinase; P-lo 95.9 0.0051 1.7E-07 50.0 3.7 26 243-268 27-52 (252)
300 3dm5_A SRP54, signal recogniti 95.9 0.038 1.3E-06 48.5 9.4 30 242-271 99-128 (443)
301 1znw_A Guanylate kinase, GMP k 95.9 0.0049 1.7E-07 48.4 3.5 27 242-268 19-45 (207)
302 4eaq_A DTMP kinase, thymidylat 95.9 0.0061 2.1E-07 48.7 4.0 28 242-269 25-52 (229)
303 2i3b_A HCR-ntpase, human cance 95.9 0.0065 2.2E-07 47.0 4.0 27 245-271 3-29 (189)
304 3foz_A TRNA delta(2)-isopenten 95.9 0.0056 1.9E-07 50.9 3.7 27 243-269 10-36 (316)
305 1xjc_A MOBB protein homolog; s 95.9 0.0079 2.7E-07 45.4 4.2 29 243-271 4-32 (169)
306 1gtv_A TMK, thymidylate kinase 95.9 0.0018 6.1E-08 51.1 0.7 25 246-270 3-27 (214)
307 4gp7_A Metallophosphoesterase; 95.9 0.003 1E-07 48.0 1.9 21 242-262 8-28 (171)
308 2fna_A Conserved hypothetical 95.8 0.01 3.6E-07 50.4 5.3 25 244-268 31-55 (357)
309 1ltq_A Polynucleotide kinase; 95.8 0.0046 1.6E-07 51.6 2.9 24 244-267 3-26 (301)
310 3a8t_A Adenylate isopentenyltr 95.8 0.009 3.1E-07 50.4 4.6 26 244-269 41-66 (339)
311 1ex7_A Guanylate kinase; subst 95.8 0.0063 2.2E-07 46.8 3.4 23 246-268 4-26 (186)
312 2f6r_A COA synthase, bifunctio 95.8 0.0059 2E-07 50.5 3.4 23 243-265 75-97 (281)
313 1rz3_A Hypothetical protein rb 95.8 0.0073 2.5E-07 47.1 3.8 28 242-269 21-48 (201)
314 1vht_A Dephospho-COA kinase; s 95.8 0.0087 3E-07 47.3 4.3 22 244-265 5-26 (218)
315 2v9p_A Replication protein E1; 95.8 0.007 2.4E-07 50.5 3.8 27 241-267 124-150 (305)
316 1q3t_A Cytidylate kinase; nucl 95.7 0.0067 2.3E-07 48.7 3.6 28 241-268 14-41 (236)
317 1odf_A YGR205W, hypothetical 3 95.7 0.0079 2.7E-07 49.9 3.8 29 241-269 29-57 (290)
318 2og2_A Putative signal recogni 95.7 0.017 5.7E-07 49.4 5.9 31 239-269 153-183 (359)
319 1bif_A 6-phosphofructo-2-kinas 95.7 0.024 8E-07 50.6 7.1 29 242-270 38-66 (469)
320 3gmt_A Adenylate kinase; ssgci 95.7 0.0075 2.6E-07 48.0 3.5 26 244-269 9-34 (230)
321 2h92_A Cytidylate kinase; ross 95.6 0.007 2.4E-07 47.9 3.3 26 244-269 4-29 (219)
322 1s96_A Guanylate kinase, GMP k 95.6 0.008 2.8E-07 47.6 3.5 27 242-268 15-41 (219)
323 2w0m_A SSO2452; RECA, SSPF, un 95.6 0.0087 3E-07 47.6 3.8 26 243-268 23-48 (235)
324 3aez_A Pantothenate kinase; tr 95.6 0.0087 3E-07 50.2 3.9 29 241-269 88-116 (312)
325 3lnc_A Guanylate kinase, GMP k 95.6 0.0038 1.3E-07 49.9 1.6 26 242-267 26-52 (231)
326 2yhs_A FTSY, cell division pro 95.6 0.043 1.5E-06 48.7 8.3 35 235-269 285-319 (503)
327 4a74_A DNA repair and recombin 95.6 0.0068 2.3E-07 48.2 3.0 25 243-267 25-49 (231)
328 2ehv_A Hypothetical protein PH 95.6 0.0066 2.3E-07 49.0 2.9 24 242-265 29-52 (251)
329 3upu_A ATP-dependent DNA helic 95.5 0.015 5.2E-07 51.7 5.4 28 245-272 47-74 (459)
330 3jvv_A Twitching mobility prot 95.5 0.0065 2.2E-07 52.0 2.9 25 245-269 125-149 (356)
331 1vma_A Cell division protein F 95.5 0.016 5.6E-07 48.4 5.3 29 241-269 102-130 (306)
332 1x6v_B Bifunctional 3'-phospho 95.5 0.026 8.8E-07 51.8 6.9 30 242-271 51-80 (630)
333 1rj9_A FTSY, signal recognitio 95.5 0.011 3.8E-07 49.4 4.2 28 242-269 101-128 (304)
334 4edh_A DTMP kinase, thymidylat 95.5 0.011 3.6E-07 46.7 3.8 29 244-272 7-35 (213)
335 3d3q_A TRNA delta(2)-isopenten 95.5 0.0088 3E-07 50.5 3.4 25 245-269 9-33 (340)
336 2cvh_A DNA repair and recombin 95.4 0.01 3.5E-07 46.8 3.6 24 242-265 19-42 (220)
337 3exa_A TRNA delta(2)-isopenten 95.4 0.0099 3.4E-07 49.5 3.4 25 245-269 5-29 (322)
338 3e1s_A Exodeoxyribonuclease V, 95.4 0.019 6.5E-07 52.5 5.6 28 244-271 205-232 (574)
339 1m8p_A Sulfate adenylyltransfe 95.4 0.031 1.1E-06 51.0 7.0 30 242-271 395-424 (573)
340 3fdi_A Uncharacterized protein 95.4 0.0094 3.2E-07 46.6 3.1 25 245-269 8-32 (201)
341 3lv8_A DTMP kinase, thymidylat 95.4 0.015 5.1E-07 46.6 4.3 30 243-272 27-56 (236)
342 1n0w_A DNA repair protein RAD5 95.3 0.0094 3.2E-07 47.8 3.1 25 242-266 23-47 (243)
343 2eyu_A Twitching motility prot 95.3 0.011 3.9E-07 48.2 3.4 28 242-269 24-51 (261)
344 2zr9_A Protein RECA, recombina 95.3 0.051 1.7E-06 46.3 7.5 28 242-269 60-87 (349)
345 3e70_C DPA, signal recognition 95.2 0.015 5.1E-07 49.1 4.0 29 241-269 127-155 (328)
346 1np6_A Molybdopterin-guanine d 95.2 0.019 6.4E-07 43.7 4.2 28 243-270 6-33 (174)
347 2onk_A Molybdate/tungstate ABC 95.2 0.007 2.4E-07 48.7 1.9 27 241-268 23-49 (240)
348 3tif_A Uncharacterized ABC tra 95.1 0.0065 2.2E-07 48.8 1.6 27 241-267 29-55 (235)
349 3eph_A TRNA isopentenyltransfe 95.1 0.013 4.6E-07 50.5 3.5 25 245-269 4-28 (409)
350 2r8r_A Sensor protein; KDPD, P 95.1 0.02 6.7E-07 45.3 4.1 30 243-272 6-35 (228)
351 3b85_A Phosphate starvation-in 95.1 0.011 3.8E-07 46.4 2.7 30 244-273 23-52 (208)
352 1sq5_A Pantothenate kinase; P- 95.1 0.014 4.9E-07 48.8 3.6 27 242-268 79-105 (308)
353 1ny5_A Transcriptional regulat 95.1 0.015 5E-07 50.5 3.7 41 242-286 159-199 (387)
354 3ld9_A DTMP kinase, thymidylat 95.0 0.017 5.7E-07 45.8 3.6 31 242-272 20-51 (223)
355 2j37_W Signal recognition part 95.0 0.072 2.5E-06 47.7 8.0 31 241-271 99-129 (504)
356 4tmk_A Protein (thymidylate ki 95.0 0.019 6.6E-07 45.2 3.8 29 244-272 4-32 (213)
357 1xp8_A RECA protein, recombina 95.0 0.057 1.9E-06 46.3 7.0 28 242-269 73-100 (366)
358 3cmu_A Protein RECA, recombina 95.0 0.026 8.8E-07 58.4 5.5 70 242-315 731-816 (2050)
359 1cr0_A DNA primase/helicase; R 94.9 0.018 6.2E-07 47.8 3.8 28 242-269 34-61 (296)
360 2qmh_A HPR kinase/phosphorylas 94.9 0.011 3.6E-07 45.8 2.1 26 243-268 34-59 (205)
361 1nlf_A Regulatory protein REPA 94.9 0.015 5.2E-07 47.9 3.3 27 242-268 29-55 (279)
362 3v9p_A DTMP kinase, thymidylat 94.9 0.017 5.9E-07 45.9 3.4 28 243-270 25-52 (227)
363 2pcj_A ABC transporter, lipopr 94.9 0.013 4.5E-07 46.6 2.7 26 242-267 29-54 (224)
364 1a7j_A Phosphoribulokinase; tr 94.9 0.012 4E-07 48.9 2.4 27 243-269 5-31 (290)
365 1b0u_A Histidine permease; ABC 94.9 0.0087 3E-07 48.9 1.6 27 241-267 30-56 (262)
366 2f1r_A Molybdopterin-guanine d 94.8 0.011 3.7E-07 44.9 2.0 27 244-270 3-29 (171)
367 2px0_A Flagellar biosynthesis 94.8 0.021 7.2E-07 47.5 3.9 30 242-271 104-134 (296)
368 2pt7_A CAG-ALFA; ATPase, prote 94.8 0.0071 2.4E-07 51.2 1.0 25 244-268 172-196 (330)
369 3fvq_A Fe(3+) IONS import ATP- 94.8 0.01 3.5E-07 50.6 2.0 28 241-268 28-55 (359)
370 2cbz_A Multidrug resistance-as 94.8 0.016 5.4E-07 46.6 2.9 28 241-268 29-56 (237)
371 2dr3_A UPF0273 protein PH0284; 94.8 0.022 7.5E-07 45.7 3.7 27 242-268 22-48 (247)
372 2olj_A Amino acid ABC transpor 94.8 0.0097 3.3E-07 48.6 1.6 27 241-267 48-74 (263)
373 3hdt_A Putative kinase; struct 94.7 0.014 4.7E-07 46.4 2.4 26 244-269 15-40 (223)
374 1g6h_A High-affinity branched- 94.7 0.0094 3.2E-07 48.5 1.5 27 241-267 31-57 (257)
375 1lw7_A Transcriptional regulat 94.7 0.015 5.2E-07 50.0 2.9 27 243-269 170-196 (365)
376 3p32_A Probable GTPase RV1496/ 94.7 0.047 1.6E-06 46.7 5.8 28 242-269 78-105 (355)
377 2gks_A Bifunctional SAT/APS ki 94.7 0.057 1.9E-06 49.0 6.6 29 243-271 372-400 (546)
378 3hr8_A Protein RECA; alpha and 94.7 0.022 7.6E-07 48.6 3.7 26 244-269 62-87 (356)
379 1sgw_A Putative ABC transporte 94.7 0.018 6E-07 45.5 2.9 26 242-267 34-59 (214)
380 3rlf_A Maltose/maltodextrin im 94.6 0.013 4.4E-07 50.5 2.1 28 241-268 27-54 (381)
381 2qen_A Walker-type ATPase; unk 94.6 0.036 1.2E-06 46.9 5.0 24 244-267 32-55 (350)
382 2qm8_A GTPase/ATPase; G protei 94.6 0.08 2.7E-06 44.9 7.0 29 241-269 53-81 (337)
383 2orw_A Thymidine kinase; TMTK, 94.6 0.026 9E-07 43.3 3.7 25 245-269 5-29 (184)
384 4akg_A Glutathione S-transfera 94.6 0.033 1.1E-06 59.4 5.4 54 245-311 647-701 (2695)
385 2zu0_C Probable ATP-dependent 94.6 0.023 7.9E-07 46.5 3.5 26 241-266 44-69 (267)
386 2ocp_A DGK, deoxyguanosine kin 94.6 0.019 6.3E-07 46.2 2.9 26 244-269 3-28 (241)
387 4b3f_X DNA-binding protein smu 94.6 0.023 7.9E-07 52.8 3.8 25 245-269 207-231 (646)
388 2yyz_A Sugar ABC transporter, 94.5 0.014 4.7E-07 50.0 2.1 28 241-268 27-54 (359)
389 3gfo_A Cobalt import ATP-bindi 94.5 0.016 5.5E-07 47.6 2.4 26 242-267 33-58 (275)
390 3tqf_A HPR(Ser) kinase; transf 94.5 0.023 7.7E-07 42.9 2.9 24 243-266 16-39 (181)
391 2d2e_A SUFC protein; ABC-ATPas 94.5 0.023 8E-07 46.0 3.3 25 242-266 28-52 (250)
392 1vpl_A ABC transporter, ATP-bi 94.5 0.021 7.1E-07 46.4 3.0 27 241-267 39-65 (256)
393 2ff7_A Alpha-hemolysin translo 94.5 0.0099 3.4E-07 48.1 1.0 26 242-267 34-59 (247)
394 2ixe_A Antigen peptide transpo 94.5 0.012 4.1E-07 48.3 1.6 27 241-267 43-69 (271)
395 2it1_A 362AA long hypothetical 94.5 0.015 5E-07 49.8 2.1 28 241-268 27-54 (362)
396 4g1u_C Hemin import ATP-bindin 94.5 0.02 6.8E-07 46.8 2.8 26 242-267 36-61 (266)
397 1g8f_A Sulfate adenylyltransfe 94.5 0.02 6.7E-07 51.3 3.0 27 243-269 395-421 (511)
398 3sop_A Neuronal-specific septi 94.5 0.023 8E-07 46.5 3.2 24 245-268 4-27 (270)
399 1v43_A Sugar-binding transport 94.4 0.015 5.2E-07 49.9 2.1 28 241-268 35-62 (372)
400 1w36_D RECD, exodeoxyribonucle 94.4 0.057 2E-06 49.7 6.1 26 244-269 165-190 (608)
401 1ji0_A ABC transporter; ATP bi 94.4 0.021 7E-07 46.0 2.8 26 242-267 31-56 (240)
402 2ghi_A Transport protein; mult 94.4 0.022 7.5E-07 46.4 2.9 27 241-267 44-70 (260)
403 1z47_A CYSA, putative ABC-tran 94.4 0.021 7.2E-07 48.7 2.9 27 242-268 40-66 (355)
404 3kl4_A SRP54, signal recogniti 94.4 0.028 9.5E-07 49.3 3.7 30 242-271 96-125 (433)
405 1mv5_A LMRA, multidrug resista 94.4 0.019 6.4E-07 46.3 2.5 27 242-268 27-53 (243)
406 3kta_A Chromosome segregation 94.4 0.025 8.6E-07 43.1 3.1 24 245-268 28-51 (182)
407 2pze_A Cystic fibrosis transme 94.4 0.022 7.5E-07 45.4 2.8 27 242-268 33-59 (229)
408 2xxa_A Signal recognition part 94.4 0.18 6.3E-06 44.2 8.9 30 241-270 98-127 (433)
409 2ewv_A Twitching motility prot 94.3 0.026 8.7E-07 48.7 3.4 28 242-269 135-162 (372)
410 2qi9_C Vitamin B12 import ATP- 94.3 0.023 7.7E-07 46.0 2.8 26 242-267 25-50 (249)
411 2yz2_A Putative ABC transporte 94.3 0.024 8.1E-07 46.4 2.9 27 241-267 31-57 (266)
412 1pzn_A RAD51, DNA repair and r 94.3 0.024 8.3E-07 48.3 3.1 26 242-267 130-155 (349)
413 3d31_A Sulfate/molybdate ABC t 94.3 0.013 4.3E-07 50.0 1.3 28 241-268 24-51 (348)
414 3cr8_A Sulfate adenylyltranfer 94.3 0.017 5.9E-07 52.3 2.2 27 243-269 369-395 (552)
415 3cmw_A Protein RECA, recombina 94.3 0.047 1.6E-06 55.7 5.5 28 242-269 731-758 (1706)
416 2ihy_A ABC transporter, ATP-bi 94.3 0.024 8E-07 46.8 2.8 27 241-267 45-71 (279)
417 3bc1_A RAS-related protein RAB 94.2 0.063 2.1E-06 40.9 5.2 25 242-266 10-34 (195)
418 2f9l_A RAB11B, member RAS onco 94.2 0.028 9.6E-07 43.5 3.1 24 244-267 6-29 (199)
419 1g29_1 MALK, maltose transport 94.2 0.025 8.4E-07 48.7 2.9 27 242-268 28-54 (372)
420 1oix_A RAS-related protein RAB 94.2 0.028 9.7E-07 43.2 3.0 25 244-268 30-54 (191)
421 3tmk_A Thymidylate kinase; pho 94.2 0.04 1.4E-06 43.4 3.9 27 243-269 5-31 (216)
422 2nq2_C Hypothetical ABC transp 94.2 0.025 8.5E-07 45.9 2.8 27 242-268 30-56 (253)
423 2v3c_C SRP54, signal recogniti 94.1 0.031 1.1E-06 49.1 3.5 29 241-269 97-125 (432)
424 1nrj_B SR-beta, signal recogni 94.1 0.037 1.3E-06 43.5 3.7 27 241-267 10-36 (218)
425 1p5z_B DCK, deoxycytidine kina 94.0 0.01 3.5E-07 48.5 0.1 27 242-268 23-49 (263)
426 2pjz_A Hypothetical protein ST 94.0 0.025 8.5E-07 46.2 2.4 25 243-267 30-54 (263)
427 2b8t_A Thymidine kinase; deoxy 94.0 0.046 1.6E-06 43.3 3.9 27 245-271 14-40 (223)
428 3gd7_A Fusion complex of cysti 93.9 0.021 7.3E-07 49.3 2.0 27 241-267 45-71 (390)
429 1u94_A RECA protein, recombina 93.9 0.042 1.4E-06 46.9 3.8 28 242-269 62-89 (356)
430 1oxx_K GLCV, glucose, ABC tran 93.8 0.013 4.5E-07 50.0 0.5 28 241-268 29-56 (353)
431 3tui_C Methionine import ATP-b 93.8 0.025 8.5E-07 48.4 2.1 27 241-267 52-78 (366)
432 4i1u_A Dephospho-COA kinase; s 93.7 0.056 1.9E-06 42.3 3.9 27 242-269 8-34 (210)
433 2bbs_A Cystic fibrosis transme 93.7 0.02 6.9E-07 47.4 1.5 28 241-268 62-89 (290)
434 1p9r_A General secretion pathw 93.7 0.04 1.4E-06 48.2 3.4 25 245-269 169-193 (418)
435 3hjn_A DTMP kinase, thymidylat 93.6 0.059 2E-06 41.8 3.9 27 246-272 3-29 (197)
436 2obl_A ESCN; ATPase, hydrolase 93.6 0.067 2.3E-06 45.5 4.5 27 242-268 70-96 (347)
437 3nh6_A ATP-binding cassette SU 93.5 0.015 5.1E-07 48.6 0.3 28 241-268 78-105 (306)
438 2zts_A Putative uncharacterize 93.5 0.041 1.4E-06 44.2 2.9 24 243-266 30-53 (251)
439 2zej_A Dardarin, leucine-rich 93.5 0.044 1.5E-06 41.8 2.9 22 244-265 3-24 (184)
440 3bh0_A DNAB-like replicative h 93.4 0.23 7.8E-06 41.6 7.5 28 242-269 67-94 (315)
441 2ged_A SR-beta, signal recogni 93.4 0.061 2.1E-06 41.2 3.7 27 241-267 46-72 (193)
442 2z43_A DNA repair and recombin 93.4 0.044 1.5E-06 46.2 3.1 26 242-267 106-131 (324)
443 3lda_A DNA repair protein RAD5 93.4 0.039 1.3E-06 47.9 2.8 24 242-265 177-200 (400)
444 1v5w_A DMC1, meiotic recombina 93.3 0.048 1.7E-06 46.4 3.3 25 243-267 122-146 (343)
445 2dyk_A GTP-binding protein; GT 93.3 0.045 1.6E-06 40.3 2.8 22 245-266 3-24 (161)
446 3clv_A RAB5 protein, putative; 93.3 0.058 2E-06 41.5 3.5 26 241-266 5-30 (208)
447 3q72_A GTP-binding protein RAD 93.3 0.052 1.8E-06 40.3 3.1 21 244-264 3-23 (166)
448 3dz8_A RAS-related protein RAB 93.3 0.063 2.2E-06 41.1 3.6 26 242-267 22-47 (191)
449 2ew1_A RAS-related protein RAB 93.3 0.083 2.8E-06 41.0 4.3 25 243-267 26-50 (201)
450 1z2a_A RAS-related protein RAB 93.2 0.043 1.5E-06 40.8 2.5 25 242-266 4-28 (168)
451 2gk6_A Regulator of nonsense t 93.2 0.051 1.7E-06 50.3 3.4 24 245-268 197-220 (624)
452 2dpy_A FLII, flagellum-specifi 93.2 0.18 6.2E-06 44.3 6.8 27 242-268 156-182 (438)
453 3io5_A Recombination and repai 93.2 0.055 1.9E-06 45.2 3.2 24 245-268 30-53 (333)
454 2wji_A Ferrous iron transport 93.2 0.052 1.8E-06 40.5 2.9 22 244-265 4-25 (165)
455 1sky_E F1-ATPase, F1-ATP synth 93.2 0.13 4.6E-06 45.3 5.8 26 244-269 152-177 (473)
456 2lkc_A Translation initiation 93.1 0.072 2.5E-06 40.0 3.7 25 241-265 6-30 (178)
457 2gza_A Type IV secretion syste 93.1 0.053 1.8E-06 46.5 3.2 27 242-268 174-200 (361)
458 2oap_1 GSPE-2, type II secreti 93.1 0.035 1.2E-06 49.9 2.1 26 243-268 260-285 (511)
459 1c9k_A COBU, adenosylcobinamid 93.1 0.055 1.9E-06 41.2 2.8 21 246-266 2-22 (180)
460 2vp4_A Deoxynucleoside kinase; 93.1 0.032 1.1E-06 44.5 1.6 25 242-266 19-43 (230)
461 1svi_A GTP-binding protein YSX 93.0 0.071 2.4E-06 40.8 3.6 26 241-266 21-46 (195)
462 2p67_A LAO/AO transport system 93.0 0.21 7.1E-06 42.4 6.7 29 241-269 54-82 (341)
463 2ce2_X GTPase HRAS; signaling 93.0 0.059 2E-06 39.8 3.0 23 244-266 4-26 (166)
464 1kao_A RAP2A; GTP-binding prot 93.0 0.064 2.2E-06 39.7 3.1 23 244-266 4-26 (167)
465 2nzj_A GTP-binding protein REM 93.0 0.05 1.7E-06 40.8 2.5 24 243-266 4-27 (175)
466 2npi_A Protein CLP1; CLP1-PCF1 93.0 0.064 2.2E-06 47.5 3.5 27 242-268 137-163 (460)
467 2i1q_A DNA repair and recombin 92.9 0.051 1.8E-06 45.7 2.8 24 243-266 98-121 (322)
468 1ls1_A Signal recognition part 92.9 0.09 3.1E-06 43.6 4.2 28 242-269 97-124 (295)
469 3dzd_A Transcriptional regulat 92.9 0.2 6.8E-06 43.0 6.5 40 242-286 151-190 (368)
470 1u8z_A RAS-related protein RAL 92.9 0.052 1.8E-06 40.2 2.5 25 243-267 4-28 (168)
471 1j8m_F SRP54, signal recogniti 92.9 0.076 2.6E-06 44.1 3.6 27 243-269 98-124 (297)
472 2www_A Methylmalonic aciduria 92.8 0.26 9E-06 41.9 7.1 27 243-269 74-100 (349)
473 3pqc_A Probable GTP-binding pr 92.8 0.077 2.7E-06 40.5 3.5 26 241-266 21-46 (195)
474 1ky3_A GTP-binding protein YPT 92.8 0.055 1.9E-06 40.8 2.5 26 242-267 7-32 (182)
475 1g16_A RAS-related protein SEC 92.8 0.053 1.8E-06 40.4 2.4 23 244-266 4-26 (170)
476 1pui_A ENGB, probable GTP-bind 92.8 0.036 1.2E-06 43.2 1.5 26 241-266 24-49 (210)
477 2gj8_A MNME, tRNA modification 92.8 0.058 2E-06 40.7 2.6 24 243-266 4-27 (172)
478 2j0v_A RAC-like GTP-binding pr 92.8 0.07 2.4E-06 41.6 3.2 26 241-266 7-32 (212)
479 2wsm_A Hydrogenase expression/ 92.7 0.073 2.5E-06 41.8 3.3 26 243-268 30-55 (221)
480 3bwd_D RAC-like GTP-binding pr 92.7 0.085 2.9E-06 39.8 3.5 26 241-266 6-31 (182)
481 1yrb_A ATP(GTP)binding protein 92.7 0.088 3E-06 42.6 3.8 27 242-268 13-39 (262)
482 1f2t_A RAD50 ABC-ATPase; DNA d 92.6 0.087 3E-06 38.8 3.4 25 245-269 25-49 (149)
483 1ek0_A Protein (GTP-binding pr 92.6 0.075 2.6E-06 39.5 3.1 24 244-267 4-27 (170)
484 1m7b_A RND3/RHOE small GTP-bin 92.6 0.056 1.9E-06 41.1 2.4 25 242-266 6-30 (184)
485 2hxs_A RAB-26, RAS-related pro 92.6 0.06 2.1E-06 40.5 2.5 25 242-266 5-29 (178)
486 2fn4_A P23, RAS-related protei 92.6 0.069 2.4E-06 40.2 2.9 25 242-266 8-32 (181)
487 1z0j_A RAB-22, RAS-related pro 92.6 0.078 2.7E-06 39.4 3.1 25 243-267 6-30 (170)
488 3kkq_A RAS-related protein M-R 92.6 0.071 2.4E-06 40.3 2.9 25 242-266 17-41 (183)
489 1wms_A RAB-9, RAB9, RAS-relate 92.6 0.078 2.7E-06 39.8 3.1 25 242-266 6-30 (177)
490 2hf9_A Probable hydrogenase ni 92.5 0.081 2.8E-06 41.7 3.3 27 242-268 37-63 (226)
491 1z08_A RAS-related protein RAB 92.5 0.08 2.7E-06 39.4 3.1 25 242-266 5-29 (170)
492 1m2o_B GTP-binding protein SAR 92.5 0.079 2.7E-06 40.6 3.1 23 243-265 23-45 (190)
493 1upt_A ARL1, ADP-ribosylation 92.5 0.079 2.7E-06 39.5 3.1 24 242-265 6-29 (171)
494 3k53_A Ferrous iron transport 92.5 0.065 2.2E-06 43.8 2.7 24 244-267 4-27 (271)
495 3ice_A Transcription terminati 92.4 0.2 6.8E-06 43.0 5.6 28 242-269 173-200 (422)
496 3tw8_B RAS-related protein RAB 92.4 0.053 1.8E-06 40.8 2.0 25 241-265 7-31 (181)
497 1fzq_A ADP-ribosylation factor 92.4 0.072 2.5E-06 40.4 2.8 26 241-266 14-39 (181)
498 2wjg_A FEOB, ferrous iron tran 92.4 0.076 2.6E-06 40.4 2.9 24 243-266 7-30 (188)
499 1c1y_A RAS-related protein RAP 92.4 0.084 2.9E-06 39.1 3.1 23 244-266 4-26 (167)
500 3euj_A Chromosome partition pr 92.4 0.069 2.4E-06 47.4 2.9 25 244-268 30-54 (483)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.1e-36 Score=236.70 Aligned_cols=158 Identities=33% Similarity=0.482 Sum_probs=145.0
Q ss_pred hhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHH
Q 021192 14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA 93 (316)
Q Consensus 14 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~ 93 (316)
.++|+.||+.|+.++|+.|| +.|+++|.++.. |.||||+|+..++.+++++|++ .|++++.+|..|+||||+|+
T Consensus 5 g~~L~~Aa~~G~~~~v~~Ll-~~Gadvn~~d~~-g~t~l~~a~~~~~~~~~~~ll~----~gad~~~~d~~g~TpLh~A~ 78 (169)
T 4gpm_A 5 GKRLIEAAENGNKDRVKDLI-ENGADVNASDSD-GRTPLHHAAENGHKEVVKLLIS----KGADVNAKDSDGRTPLHHAA 78 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHh----cccchhhhccCCCCHHHHHH
Confidence 35799999999999999998 578999999987 9999999999999999999999 88999999999999999999
Q ss_pred HcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHH
Q 021192 94 KNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRE 173 (316)
Q Consensus 94 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~ 173 (316)
..|+.+++++|+++|+++|.+|.+|+||||+|+ ..|+.+++++|+++|+|++.+|..|+||||+|+. .+..++++
T Consensus 79 ~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~----~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~-~g~~~iv~ 153 (169)
T 4gpm_A 79 ENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA----ENGHKEVVKLLISKGADVNTSDSDGRTPLDLARE-HGNEEVVK 153 (169)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-TTCHHHHH
T ss_pred HcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH-cCCHHHHH
Confidence 999999999999999999999999999999999 8999999999999999999999999999976665 45678889
Q ss_pred HHHHhHHHH
Q 021192 174 LLLWHSEEQ 182 (316)
Q Consensus 174 lL~~~~~~~ 182 (316)
+|+++|++.
T Consensus 154 ~Ll~~GA~i 162 (169)
T 4gpm_A 154 LLEKQGGWL 162 (169)
T ss_dssp HHHTC----
T ss_pred HHHHCCCCc
Confidence 999888764
No 2
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=242.59 Aligned_cols=161 Identities=28% Similarity=0.367 Sum_probs=145.4
Q ss_pred CCcccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccccc
Q 021192 2 QKNQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (316)
Q Consensus 2 ~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 80 (316)
+.|.+.+. +..|+||||+||..|+.++|+.|+ +.+++++.++.. |.||||+|+..++.+++++|++ .|++++.
T Consensus 74 ~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll-~~~a~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~----~g~~~n~ 147 (269)
T 4b93_B 74 ASGLGVNVTSQDGSSPLHVAALHGRADLIPLLL-KHGANAGARNAD-QAVPLHLACQQGHFQVVKCLLD----SNAKPNK 147 (269)
T ss_dssp -CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHH-HTTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHH----TTCCSCC
T ss_pred HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-hcCCCcCccCCC-CCCccccccccChHHHHHHHHH----CCCCCCC
Confidence 45677764 678999999999999999999888 577888988876 9999999999999999999999 7899999
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccc
Q 021192 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160 (316)
Q Consensus 81 ~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~ 160 (316)
+|..|+||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+ ..|+.++|++|+++|+|++.+|..|+||||
T Consensus 148 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~----~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~ 223 (269)
T 4b93_B 148 KDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV----IEKHVFVVELLLLHGASVQVLNKRQRTAVD 223 (269)
T ss_dssp CCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHH----HTTCHHHHHHHHHTTCCSCCCCTTSCCSGG
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999 889999999999999999999999999998
Q ss_pred cccCCCChHHHHHHH
Q 021192 161 HLSNGPGSAKLRELL 175 (316)
Q Consensus 161 ~~a~~~~~~~~~~lL 175 (316)
+|+..+ .++++|
T Consensus 224 ~A~~~~---~i~~lL 235 (269)
T 4b93_B 224 CAEQNS---KIMELL 235 (269)
T ss_dssp GSCTTC---HHHHHT
T ss_pred HHHhCC---cHHHHH
Confidence 776543 244444
No 3
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=100.00 E-value=7.3e-34 Score=220.55 Aligned_cols=160 Identities=31% Similarity=0.481 Sum_probs=147.0
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
.++.+.|+||.|+..|+.++++.|+...+.+++..+.. |.||||+|+..|+.+++++|++ .+++++.+|..|+||
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~ 78 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGR-QSTPLHFAAGYNRVSVVEYLLQ----HGADVHAKDKGGLVP 78 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccC-CCCHHHHHHHcChHHHHHHHHh----cCCCCCccCCCCCCH
Confidence 35678999999999999999999998788888888876 9999999999999999999999 789999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCCh
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~ 168 (316)
||+|+..++.+++++|+++|++++..|..|.||||+|+ ..++.+++++|+++|++++.+|..|+||+|+|+. +.
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~--~~ 152 (165)
T 3twr_A 79 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA----AKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD--GD 152 (165)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT--TC
T ss_pred HHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc--CC
Confidence 99999999999999999999999999999999999999 8899999999999999999999999999976544 56
Q ss_pred HHHHHHHHHhH
Q 021192 169 AKLRELLLWHS 179 (316)
Q Consensus 169 ~~~~~lL~~~~ 179 (316)
.+++++|...|
T Consensus 153 ~~i~~~L~~~g 163 (165)
T 3twr_A 153 TDIQDLLRGDA 163 (165)
T ss_dssp HHHHHHHHTC-
T ss_pred hHHHHHHhhcc
Confidence 68888888765
No 4
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=2.6e-33 Score=218.90 Aligned_cols=161 Identities=27% Similarity=0.343 Sum_probs=147.1
Q ss_pred ChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHH
Q 021192 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (316)
Q Consensus 13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a 92 (316)
+.||||.||..|+.+.++.|+..++..++.++.. |.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 76 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDER-GFTPLIWASAFGEIETVRFLLE----WGADPHILAKERESALSLA 76 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTT-SCCHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTCCCHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCchhhcccCCCHHHHH
Confidence 4689999999999999999998777768888876 9999999999999999999999 7899999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHH
Q 021192 93 AKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 172 (316)
Q Consensus 93 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~ 172 (316)
+..++.+++++|+++|++++..|..|.||||+|+ ..++.+++++|+++|++++.+|..|+||||+|+.. +..+++
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~-~~~~~~ 151 (172)
T 3v30_A 77 STGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV----RGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL-GYRKVQ 151 (172)
T ss_dssp HHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHH
T ss_pred HHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHh-CcHHHH
Confidence 9999999999999999999999999999999999 88999999999999999999999999999766654 567788
Q ss_pred HHHHHhHHHHH
Q 021192 173 ELLLWHSEEQR 183 (316)
Q Consensus 173 ~lL~~~~~~~~ 183 (316)
++|.+++.+..
T Consensus 152 ~~L~~~~~~~~ 162 (172)
T 3v30_A 152 QVIENHILKLF 162 (172)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHh
Confidence 88888776543
No 5
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=100.00 E-value=4.6e-33 Score=218.98 Aligned_cols=161 Identities=24% Similarity=0.285 Sum_probs=147.5
Q ss_pred CCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHH
Q 021192 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (316)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh 90 (316)
+.+.++||.||..|+.++++.|+...+.+++.++.. |.||||+|+..|+.+++++|++ .+++++.+|..|+||||
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~ 77 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDH-GFSPLHWACREGRSAVVEMLIM----RGARINVMNRGDDTPLH 77 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCC-CCCHHHHHHHcCcHHHHHHHHH----cCCCCCCcCCCCCCHHH
Confidence 457899999999999999999998888999999977 9999999999999999999999 78999999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHH
Q 021192 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAK 170 (316)
Q Consensus 91 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~ 170 (316)
+|+..|+.+++++|+++|++++..|..|.||||+|+ ..++.+++++|+++|++++.+|..|.||+++|+ ..+...
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~-~~~~~~ 152 (179)
T 3f6q_A 78 LAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC----FWGQDQVAEDLVANGALVSICNKYGEMPVDKAK-APLREL 152 (179)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSC-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCcchhccCCCCcHHHHH-HHHHHH
Confidence 999999999999999999999999999999999999 889999999999999999999999999996554 466778
Q ss_pred HHHHHHHhHHH
Q 021192 171 LRELLLWHSEE 181 (316)
Q Consensus 171 ~~~lL~~~~~~ 181 (316)
++++|.+++++
T Consensus 153 ~~~~L~~~g~~ 163 (179)
T 3f6q_A 153 LRERAEKMGQN 163 (179)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHhhcC
Confidence 88888877754
No 6
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=100.00 E-value=4.7e-33 Score=216.42 Aligned_cols=159 Identities=24% Similarity=0.340 Sum_probs=146.5
Q ss_pred CChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHH
Q 021192 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (316)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~ 91 (316)
.|.||||.||..|+.++++.|+.. +.+++.++.. |.||||+|+..|+.+++++|++ .+++++.+|..|+||||+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~ 75 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEE-GFTPLMWAAAHGQIAVVEFLLQ----NGADPQLLGKGRESALSL 75 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCC-CCCHHHHHHHCCCHHHHHHHHH----cCCCCCCcCCCCCcHHHH
Confidence 578999999999999999999965 6888999876 9999999999999999999999 788999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHH
Q 021192 92 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKL 171 (316)
Q Consensus 92 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~ 171 (316)
|+..++.+++++|++.|++++..|..|.||||+|+ ..++.+++++|+++|++++.+|..|.||+|+|+. .+..++
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~-~~~~~~ 150 (167)
T 3v31_A 76 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV----HGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA-LGYRSV 150 (167)
T ss_dssp HHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-HTCHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH-cCcHHH
Confidence 99999999999999999999999999999999999 8899999999999999999999999999976665 456777
Q ss_pred HHHHHHhHHH
Q 021192 172 RELLLWHSEE 181 (316)
Q Consensus 172 ~~lL~~~~~~ 181 (316)
+++|.+++.+
T Consensus 151 ~~~L~~~~~~ 160 (167)
T 3v31_A 151 QQVIESHLLK 160 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7888776543
No 7
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=8.6e-33 Score=215.40 Aligned_cols=160 Identities=32% Similarity=0.389 Sum_probs=145.0
Q ss_pred cCCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCCh
Q 021192 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (316)
Q Consensus 8 ~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (316)
.....+.++|+.||..|+.+++++|+. .+.+++.++.. |.||||+|+..|+.+++++|++ .+++++.+|..|+|
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t 82 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRILMA-NGADVNAEDAS-GWTPLHLAAFNGHLEIVEVLLK----NGADVNAVDHAGMT 82 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCC
T ss_pred cCCCcccchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCC
Confidence 346678999999999999999999985 68899999876 9999999999999999999999 78899999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCC
Q 021192 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (316)
Q Consensus 88 ~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~ 167 (316)
|||+|+..++.+++++|+++|++++..|..|.||||+|+ ..++.+++++|+++|++++.+|..|.|||++|+. .+
T Consensus 83 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~-~~ 157 (169)
T 2y1l_E 83 PLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA----MFGHLEIVEVLLKNGADVNAQDKFGKTAFDISID-NG 157 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-TT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH-hC
Confidence 999999999999999999999999999999999999999 8899999999999999999999999999976665 45
Q ss_pred hHHHHHHHHHh
Q 021192 168 SAKLRELLLWH 178 (316)
Q Consensus 168 ~~~~~~lL~~~ 178 (316)
..+++++|.+.
T Consensus 158 ~~~~~~~L~~~ 168 (169)
T 2y1l_E 158 NEDLAEILQKL 168 (169)
T ss_dssp CHHHHHHHHTC
T ss_pred CHHHHHHHHHc
Confidence 67777777754
No 8
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=3e-33 Score=222.53 Aligned_cols=160 Identities=25% Similarity=0.291 Sum_probs=147.4
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
.+..|.||||+||..|+.++++.|+. .+.+++..+.. |.||||+|+..|+.+++++|++ .+++++.+|..|+||
T Consensus 31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~ 104 (192)
T 2rfm_A 31 RDSYNRTPLMVACMLGMENAIDKLVE-NFDKLEDKDIE-GSTALIWAVKNNRLGIAEKLLS----KGSNVNTKDFSGKTP 104 (192)
T ss_dssp CCTTCCCHHHHHHHHTCGGGHHHHHH-HHCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTSCCH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHH-hcccccccccc-CccHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCcH
Confidence 46789999999999999999999996 46788888876 9999999999999999999999 788999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCCh
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~ 168 (316)
||+|+..++.+++++|++.|++++.+|..|.||||+|+ ..++.+++++|+++|++++.+|..|.||+|+|+. .+.
T Consensus 105 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~-~~~ 179 (192)
T 2rfm_A 105 LMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVAS----KYGRSEIVKKLLELGADISARDLTGLTAEASARI-FGR 179 (192)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH----HHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH-TTC
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH-hCc
Confidence 99999999999999999999999999999999999999 8899999999999999999999999999976665 456
Q ss_pred HHHHHHHHHhH
Q 021192 169 AKLRELLLWHS 179 (316)
Q Consensus 169 ~~~~~lL~~~~ 179 (316)
.+++++|.+++
T Consensus 180 ~~~v~~Ll~~~ 190 (192)
T 2rfm_A 180 QEVIKIFTEVR 190 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 67777777654
No 9
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=7.3e-33 Score=215.08 Aligned_cols=139 Identities=29% Similarity=0.419 Sum_probs=126.1
Q ss_pred CCcccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccccc
Q 021192 2 QKNQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (316)
Q Consensus 2 ~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 80 (316)
+.|.|.+. +..|.||||+|+..|+.++++.|+ +.+.+++.++.. |+||||+|+..|+.+++++|++ .|+++|.
T Consensus 25 ~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll-~~gad~~~~d~~-g~TpLh~A~~~g~~~~v~~Ll~----~gadvn~ 98 (169)
T 4gpm_A 25 ENGADVNASDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSD-GRTPLHHAAENGHKEVVKLLIS----KGADVNA 98 (169)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTC
T ss_pred HCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-hcccchhhhccC-CCCHHHHHHHcCCHHHHHHHHH----CcCCCCC
Confidence 46777775 678999999999999999999888 578999999987 9999999999999999999999 7899999
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCC
Q 021192 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSA 150 (316)
Q Consensus 81 ~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~ 150 (316)
+|.+|+||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+ ..++.+++++|+++||+++.
T Consensus 99 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~----~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 99 KDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR----EHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHTC------
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCcCC
Confidence 9999999999999999999999999999999999999999999999 88999999999999999864
No 10
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=1.5e-32 Score=212.45 Aligned_cols=158 Identities=24% Similarity=0.313 Sum_probs=143.8
Q ss_pred CCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHH
Q 021192 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (316)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh 90 (316)
....|+||.|+..|+.++++.|+ +.+.+++.++.. |.||||+|+. |+.+++++|++ .+++++.+|..|+||||
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~-g~t~L~~A~~-~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~ 75 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLL-QNNVNVNAQNGF-GRTALQVMKL-GNPEIARRLLL----RGANPDLKDRTGFAVIH 75 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHT-TSCCCTTCCCTT-SCCHHHHCCS-SCHHHHHHHHH----TTCCTTCCCTTSCCHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHH-hCCCCccccCcc-CccHHHHHHc-CcHHHHHHHHH----cCCCCCCCCCCCCCHHH
Confidence 35689999999999999999999 577899999876 9999999999 99999999999 78999999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCC-CCCCCCCCCCccccccCCCChH
Q 021192 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD-CSAKDNEGKTPLDHLSNGPGSA 169 (316)
Q Consensus 91 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~-~~~~~~~g~tpl~~~a~~~~~~ 169 (316)
+|+..|+.+++++|++.|++++.+|..|.||||+|+ ..++.+++++|+++|++ ++.+|..|+||||+|+. .+..
T Consensus 76 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~-~~~~ 150 (162)
T 1ihb_A 76 DAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA----KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL-YGRN 150 (162)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH-TTCH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHH-cCCH
Confidence 999999999999999999999999999999999999 88999999999999998 59999999999976665 4567
Q ss_pred HHHHHHHHhHH
Q 021192 170 KLRELLLWHSE 180 (316)
Q Consensus 170 ~~~~lL~~~~~ 180 (316)
+++++|.++|+
T Consensus 151 ~~~~~Ll~~GA 161 (162)
T 1ihb_A 151 EVVSLMQANGA 161 (162)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHhCC
Confidence 78888887764
No 11
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.98 E-value=8.7e-32 Score=220.24 Aligned_cols=165 Identities=28% Similarity=0.381 Sum_probs=148.1
Q ss_pred cCCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCCh
Q 021192 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (316)
Q Consensus 8 ~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (316)
..+..|.||||+||..|+.+++++|+. .+.+++.++.. |.||||+|+..|+.+++++|++ .+++++.+|..|+|
T Consensus 35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t 108 (231)
T 3aji_A 35 RTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDA-GWSPLHIAASAGXDEIVKALLV----KGAHVNAVNQNGCT 108 (231)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCC
T ss_pred cCCCCCCCHHHHHHHcCcHHHHHHHHH-hCCCCCCcCCC-CCCHHHHHHHcCHHHHHHHHHH----cCCCCCCCCCCCCC
Confidence 347789999999999999999998884 57889998876 9999999999999999999999 78889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCC
Q 021192 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (316)
Q Consensus 88 ~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~ 167 (316)
|||+|+..++.+++++|++.|++++..|..|.||||+|+ ..++.+++++|+++|++++.+|..|+||||+|+.. +
T Consensus 109 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~ 183 (231)
T 3aji_A 109 PLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA----AKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE-E 183 (231)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-T
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH----HcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHC-C
Confidence 999999999999999999999999999999999999999 88999999999999999999999999999766654 5
Q ss_pred hHHHHHHHHHhHHHHH
Q 021192 168 SAKLRELLLWHSEEQR 183 (316)
Q Consensus 168 ~~~~~~lL~~~~~~~~ 183 (316)
..+++++|.++|++..
T Consensus 184 ~~~~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 184 RVEEAKFLVTQGASIY 199 (231)
T ss_dssp CHHHHHHHHHTTCCSC
T ss_pred CHHHHHHHHHCCCCCC
Confidence 5677788888776543
No 12
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.98 E-value=7.1e-32 Score=219.57 Aligned_cols=171 Identities=23% Similarity=0.282 Sum_probs=149.4
Q ss_pred CcccccC--CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccccc
Q 021192 3 KNQDRRS--RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (316)
Q Consensus 3 ~~~~~~~--~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 80 (316)
.+.+.+. +..|.||||+||..|+.+++++|+ +.+.+++..+.. |.||||+|+..|+.+++++|++. ...+++.
T Consensus 13 ~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~ 87 (223)
T 2f8y_A 13 QGASLHNQTDRTGETALHLAARYSRSDAAKRLL-EASADANIQDNM-GRTPLHAAVSADAQGVFQILIRN---RATDLDA 87 (223)
T ss_dssp TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHB---TTSCTTC
T ss_pred cCCCcccccCCCCCchHHHHHHcCCHHHHHHHH-HcCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHc---CCCCccc
Confidence 4444443 678999999999999999999998 467889998876 99999999999999999999993 2348889
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccc
Q 021192 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160 (316)
Q Consensus 81 ~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~ 160 (316)
++..|+||||+|+..++.+++++|++.|++++..|..|.||||+|+ ..++.+++++|+++|++++.+|..|.||||
T Consensus 88 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 163 (223)
T 2f8y_A 88 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA----AVNNVDAAVVLLKNGANKDMQNNREETPLF 163 (223)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred CCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCcCHHH
Confidence 9999999999999999999999999999999999999999999999 889999999999999999999999999997
Q ss_pred cccCCCChHHHHHHHHHhHHHHH
Q 021192 161 HLSNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 161 ~~a~~~~~~~~~~lL~~~~~~~~ 183 (316)
+|+. .+..+++++|.+++++..
T Consensus 164 ~A~~-~~~~~~v~~Ll~~ga~~~ 185 (223)
T 2f8y_A 164 LAAR-EGSYETAKVLLDHFANRD 185 (223)
T ss_dssp HHHH-HTCHHHHHHHHHTTCCTT
T ss_pred HHHH-cCCHHHHHHHHHcCCCCc
Confidence 6665 456677778887776544
No 13
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.98 E-value=6.4e-32 Score=206.93 Aligned_cols=151 Identities=28% Similarity=0.401 Sum_probs=136.9
Q ss_pred ChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHH
Q 021192 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (316)
Q Consensus 13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a 92 (316)
..|+||.|+..|+.++++.|+.. +.+++ .+.. |.||||+|+..|+.+++++|++ .+++++.+|..|+||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 74 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMAN-GAPFT-TDWL-GTSPLHLAAQYGHFSTTEVLLR----AGVSRDARTKVDRTPLHMA 74 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTT-CCCHHHHHHHHTCHHHHHHHHT----TTCCTTCCCTTCCCHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHc-CCCCC-cCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHH
Confidence 46899999999999999999965 44555 3444 9999999999999999999999 7889999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHH
Q 021192 93 AKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 172 (316)
Q Consensus 93 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~ 172 (316)
+..|+.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|+++|++++.+|..|.||||+|+.. +..+++
T Consensus 75 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~-~~~~i~ 149 (153)
T 1awc_B 75 ASEGHANIVEVLLKHGADVNAKDMLKMTALHWAT----EHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN-GNEDLA 149 (153)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHH
T ss_pred HHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc-CCHHHH
Confidence 9999999999999999999999999999999999 88999999999999999999999999999776654 556666
Q ss_pred HHH
Q 021192 173 ELL 175 (316)
Q Consensus 173 ~lL 175 (316)
++|
T Consensus 150 ~~L 152 (153)
T 1awc_B 150 EIL 152 (153)
T ss_dssp HHH
T ss_pred HHh
Confidence 665
No 14
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.98 E-value=3e-32 Score=226.23 Aligned_cols=170 Identities=23% Similarity=0.302 Sum_probs=147.4
Q ss_pred Cccccc--CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcc-ccc
Q 021192 3 KNQDRR--SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV-ELE 79 (316)
Q Consensus 3 ~~~~~~--~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~-~~~ 79 (316)
.+.+.. .+..|.||||+||..|+.++++.|+ +.+.+++.++.. |.||||+|+..|+.+++++|++ .+. +++
T Consensus 45 ~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~ 118 (253)
T 1yyh_A 45 QGASLHNQTDRTGETALHLAARYSRSDAAKRLL-EASADANIQDNM-GRTPLHAAVSADAQGVFQILIR----NRATDLD 118 (253)
T ss_dssp -------CCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----STTSCTT
T ss_pred ccCCcccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCcc
Confidence 444443 3678999999999999999999888 568899999876 9999999999999999999999 444 889
Q ss_pred cccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCcc
Q 021192 80 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159 (316)
Q Consensus 80 ~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl 159 (316)
.+|..|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+ ..++.+++++|+++|++++.+|..|+|||
T Consensus 119 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL 194 (253)
T 1yyh_A 119 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA----AVNNVDAAVVLLKNGANKDMQNNREETPL 194 (253)
T ss_dssp CCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHH----HHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred ccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999 88999999999999999999999999999
Q ss_pred ccccCCCChHHHHHHHHHhHHHHH
Q 021192 160 DHLSNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 160 ~~~a~~~~~~~~~~lL~~~~~~~~ 183 (316)
|+|+.. +..+++++|++++++..
T Consensus 195 ~~A~~~-~~~~~v~~Ll~~ga~~~ 217 (253)
T 1yyh_A 195 FLAARE-GSYETAKVLLDHFANRD 217 (253)
T ss_dssp HHHHHH-TCHHHHHHHHHTTCCTT
T ss_pred HHHHHC-CCHHHHHHHHHcCCCcc
Confidence 766654 56678888888876544
No 15
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.98 E-value=1.1e-31 Score=219.84 Aligned_cols=161 Identities=29% Similarity=0.356 Sum_probs=144.4
Q ss_pred CChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccc-----ccccCCCC
Q 021192 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL-----EAQNMYGE 86 (316)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-----~~~~~~g~ 86 (316)
.|.||||+||..|+.++++.|+...+.+++.++.. |.||||+|+..|+.+++++|++ .++++ +.+|..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~g~ 76 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM-GETALHIAALYDNLEAAMVLME----AAPELVFEPMTSELYEGQ 76 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----HCGGGGGCCCCSTTTTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCchhccccccccCCCCc
Confidence 48999999999999999999998779999999976 9999999999999999999999 56665 67788999
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCcccccc-------------CCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCC
Q 021192 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-------------NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN 153 (316)
Q Consensus 87 t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~-------------~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~ 153 (316)
||||+|+..|+.+++++|++.|++++..+. .|.||||+|+ ..++.+++++|+++|++++.+|.
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~d~ 152 (232)
T 2rfa_A 77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA----CVGSEEIVRLLIEHGADIRAQDS 152 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHH----HHTCHHHHHHHHHTTCCTTCCCT
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCCCC
Confidence 999999999999999999999999998876 7999999999 88999999999999999999999
Q ss_pred CCCCccccccCCCChHHH---HHHHHHhHHH
Q 021192 154 EGKTPLDHLSNGPGSAKL---RELLLWHSEE 181 (316)
Q Consensus 154 ~g~tpl~~~a~~~~~~~~---~~lL~~~~~~ 181 (316)
.|+||||+|+..++...+ +++|.+++.+
T Consensus 153 ~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 153 LGNTVLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp TSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 999999888776654432 3777776653
No 16
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.98 E-value=8.7e-32 Score=206.79 Aligned_cols=153 Identities=28% Similarity=0.421 Sum_probs=141.3
Q ss_pred ChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHH
Q 021192 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (316)
Q Consensus 13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a 92 (316)
+.|+||.||..|+.++++.|+...+.+++..+.. |.||||+ +..|+.+++++|++ .|++++.+|..|+||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~-~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 75 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRF-GKTALQV-MMFGSTAIALELLK----QGASPNVQDTSGTSPVHDA 75 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTT-SCCHHHH-SCTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCC-CCcHHHH-HHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHH
Confidence 5789999999999999999998866789999877 9999999 99999999999999 7899999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHH
Q 021192 93 AKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 172 (316)
Q Consensus 93 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~ 172 (316)
+..|+.+++++|++.|++++.+|..|.||||+|+ ..++.+++++|++. ++++.+|..|.||||+|+.. +..+++
T Consensus 76 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~-~~~~~v 149 (156)
T 1bd8_A 76 ARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV----QEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQR-GAQDLV 149 (156)
T ss_dssp HHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH----HHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHS-CCHHHH
T ss_pred HHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHH----HhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHc-CcHHHH
Confidence 9999999999999999999999999999999999 88999999999999 99999999999999777654 556677
Q ss_pred HHHHH
Q 021192 173 ELLLW 177 (316)
Q Consensus 173 ~lL~~ 177 (316)
++|.+
T Consensus 150 ~~Ll~ 154 (156)
T 1bd8_A 150 DILQG 154 (156)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77654
No 17
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.98 E-value=9e-32 Score=226.60 Aligned_cols=168 Identities=26% Similarity=0.302 Sum_probs=143.6
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCC---------------
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN--------------- 73 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--------------- 73 (316)
.+..|.||||+||..|+.++++.|+ +.+++++.++.. |.||||+|+..|+.+++++|++++++
T Consensus 41 ~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~-g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 118 (282)
T 1oy3_D 41 QNDLGQTALHLAAILGEASTVEKLY-AAGAGVLVAERG-GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD 118 (282)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSSCCCTT-SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCC-CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccc
Confidence 4667899999999999999999888 568888888876 99999999999999999999985432
Q ss_pred ----------------------------CccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccC-CCcHHHH
Q 021192 74 ----------------------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN-GMTPLHL 124 (316)
Q Consensus 74 ----------------------------~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~ 124 (316)
.+.+++.+|..|+||||+|+..|+.+++++|+++|++++..+.. |.||||+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~ 198 (282)
T 1oy3_D 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL 198 (282)
T ss_dssp -------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred cCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHH
Confidence 13457788889999999999999999999999999999998854 9999999
Q ss_pred HhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhHHHHH
Q 021192 125 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 125 a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~ 183 (316)
|+ ..++.+++++|+++|++++.+|..|+||||+|+. .+...++++|+++|++..
T Consensus 199 A~----~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~-~~~~~~v~~Ll~~ga~~~ 252 (282)
T 1oy3_D 199 AV----EAQAASVLELLLKAGADPTARMYGGRTPLGSALL-RPNPILARLLRAHGAPEP 252 (282)
T ss_dssp HH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT-SSCHHHHHHHHHTTCCCC
T ss_pred HH----HcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHH-cCCcHHHHHHHHcCCCcC
Confidence 99 8899999999999999999999999999966665 456778888888876544
No 18
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.98 E-value=9.9e-32 Score=220.74 Aligned_cols=167 Identities=25% Similarity=0.249 Sum_probs=148.6
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCC--ccccccccCCCC
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND--KVELEAQNMYGE 86 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~g~ 86 (316)
.+..|.||||+||..|+.++++.|+ +.+.+++.++.. |.||||+|+..|+.+++++|++.+++. ...++..|..|+
T Consensus 41 ~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~ 118 (236)
T 1ikn_D 41 QNNLQQTPLHLAVITNQPEIAEALL-GAGCDPELRDFR-GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 118 (236)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHCCC-SCCCCSCCCCTT-CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCC
Confidence 4667999999999999999999888 578999999876 999999999999999999999954321 233678889999
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCcccccc-CCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCC
Q 021192 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165 (316)
Q Consensus 87 t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~ 165 (316)
||||+|+..|+.+++++|++.|++++..+. .|.||||+|+ ..++.+++++|+++|++++.+|..|+||||+|+.
T Consensus 119 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~- 193 (236)
T 1ikn_D 119 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV----DLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG- 193 (236)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH----HTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTT-
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHc-
Confidence 999999999999999999999999999998 9999999999 8899999999999999999999999999966655
Q ss_pred CChHHHHHHHHHhHHHH
Q 021192 166 PGSAKLRELLLWHSEEQ 182 (316)
Q Consensus 166 ~~~~~~~~lL~~~~~~~ 182 (316)
.+..+++++|.++|++.
T Consensus 194 ~~~~~~~~~Ll~~ga~~ 210 (236)
T 1ikn_D 194 RPSTRIQQQLGQLTLEN 210 (236)
T ss_dssp SSCHHHHHHHHTTSCGG
T ss_pred cCchHHHHHHHHcchhh
Confidence 56778888888887653
No 19
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.98 E-value=1.2e-31 Score=214.70 Aligned_cols=164 Identities=20% Similarity=0.264 Sum_probs=108.3
Q ss_pred CCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHH
Q 021192 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (316)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh 90 (316)
+.+.|+||.|+..|+.+.++.|+...+.+++..+.. |.||||+|+..|+.+++++|++ .|++++.+|..|+||||
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~ 77 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTE-GNTPLNIAVHNNDIEIAKALID----RGADINLQNSISDSPYL 77 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHH
Confidence 345667777777777777776666665566666654 6777777777777777777776 56666666666777777
Q ss_pred HHHHcCCHHHHHHHH-hcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcC-CCCCCCCCCCCCccccccCCCC-
Q 021192 91 MAAKNGCNEAAKLLL-AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN-ADCSAKDNEGKTPLDHLSNGPG- 167 (316)
Q Consensus 91 ~a~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~~a~~~~- 167 (316)
+|+..|+.+++++|+ ..+++++..|..|.||||+|+ ..++.+++++|+++| ++++.+|..|+||||+|+..+.
T Consensus 78 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 153 (201)
T 3hra_A 78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAA----EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREG 153 (201)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHH----HTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCC
T ss_pred HHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHH----HcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccc
Confidence 777777777777766 445666666667777777776 666677777777666 6677777777777766554443
Q ss_pred ---hHHHHHHHHHhHHHHH
Q 021192 168 ---SAKLRELLLWHSEEQR 183 (316)
Q Consensus 168 ---~~~~~~lL~~~~~~~~ 183 (316)
..+++++|.+++.+..
T Consensus 154 ~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 154 NQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp SHHHHHHHHHHHHTTCCTT
T ss_pred hhhHHHHHHHHHHCCCCCC
Confidence 2556666666654433
No 20
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=1.2e-31 Score=219.67 Aligned_cols=168 Identities=26% Similarity=0.338 Sum_probs=145.7
Q ss_pred cccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCCCcc-----cCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccc
Q 021192 4 NQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENPSLL-----NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE 77 (316)
Q Consensus 4 ~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~-----~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~ 77 (316)
+.+.+. +..|.||||+||..|+.++++.|+..+ .++ +..+.. |.||||+|+..|+.+++++|++ .|++
T Consensus 27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~ 100 (232)
T 2rfa_A 27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAA-PELVFEPMTSELYE-GQTALHIAVINQNVNLVRALLA----RGAS 100 (232)
T ss_dssp CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCCSTTTT-TCCHHHHHHHTTCHHHHHHHHH----TTCC
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC-chhccccccccCCC-CcCHHHHHHHcCCHHHHHHHHh----CCCC
Confidence 555554 678999999999999999999999654 443 455555 9999999999999999999999 6778
Q ss_pred cccccC-------------CCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHH----HH
Q 021192 78 LEAQNM-------------YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATV----KT 140 (316)
Q Consensus 78 ~~~~~~-------------~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~----~~ 140 (316)
++.++. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++ ++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~----~~~~~~~~~~i~~~ 176 (232)
T 2rfa_A 101 VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILI----LQPNKTFACQMYNL 176 (232)
T ss_dssp TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----TCSCHHHHHHHHHH
T ss_pred CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HcCChHHHHHHHHH
Confidence 887765 7999999999999999999999999999999999999999999 88999988 99
Q ss_pred HHhcCCCC------CCCCCCCCCccccccCCCChHHHHHHHHHhHHHH
Q 021192 141 LLEYNADC------SAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 182 (316)
Q Consensus 141 Ll~~ga~~------~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~ 182 (316)
|+++|+++ +.+|..|+||||+|+. .++.+++++|++++...
T Consensus 177 Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~-~g~~~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 177 LLSYDGGDHLKSLELVPNNQGLTPFKLAGV-EGNIVMFQHLMQKRKHI 223 (232)
T ss_dssp HHHTTCSCSSCCGGGCCCTTSCCHHHHHHH-HTCHHHHHHHHHHHHHC
T ss_pred HHhcCCchhhhhhhccCCCCCCCHHHHHHH-cCCHHHHHHHHhcCccc
Confidence 99999998 5899999999977666 45677778888777553
No 21
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.97 E-value=5.3e-32 Score=224.75 Aligned_cols=167 Identities=25% Similarity=0.331 Sum_probs=151.0
Q ss_pred CCcccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccccc
Q 021192 2 QKNQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (316)
Q Consensus 2 ~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 80 (316)
+.+.+.+. +..|.||||+|+..|+.++++.|+..+..+++.++.. |.||||+|+..|+.+++++|++ .|++++.
T Consensus 78 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~ 152 (253)
T 1yyh_A 78 EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD-GTTPLILAARLAVEGMLEDLIN----SHADVNA 152 (253)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTT-CCCHHHHHHHHTCSSHHHHHHH----TTCCTTC
T ss_pred HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCC-CCcHHHHHHHcChHHHHHHHHH----cCCCCCC
Confidence 34556654 6679999999999999999999998777789999876 9999999999999999999999 7899999
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccc
Q 021192 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160 (316)
Q Consensus 81 ~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~ 160 (316)
+|..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+ ..++.+++++|+++|++++.+|..|.||++
T Consensus 153 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~----~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~ 228 (253)
T 1yyh_A 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA----REGSYETAKVLLDHFANRDITDHMDRLPRD 228 (253)
T ss_dssp BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HCCCHHHHHHHHHcCCCccccccCCCCHHH
Confidence 9999999999999999999999999999999999999999999999 889999999999999999999999999996
Q ss_pred cccCCCChHHHHHHHHHh
Q 021192 161 HLSNGPGSAKLRELLLWH 178 (316)
Q Consensus 161 ~~a~~~~~~~~~~lL~~~ 178 (316)
+|+. .++.+++.+|...
T Consensus 229 ~A~~-~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 229 IAQE-RMHHDIVRLLDLE 245 (253)
T ss_dssp HHHH-TTCHHHHHHHHC-
T ss_pred HHHH-cCCHHHHHHHHHH
Confidence 6665 5566777777644
No 22
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=1.8e-32 Score=227.97 Aligned_cols=167 Identities=21% Similarity=0.209 Sum_probs=144.4
Q ss_pred CCCCChhhHHHHHhc---CCHHHHHHHHhhCCCcccC-----------CCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCC
Q 021192 9 SRSAKPATIHGCAQS---GDLLAFQRLLRENPSLLNE-----------RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND 74 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~-----------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~ 74 (316)
.+..|.||||+||.. |+.++++.|+.. +.+++. .+.. |.||||+|+..|+.+++++|++ .
T Consensus 39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~----~ 112 (256)
T 2etb_A 39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQI-DKDSGNPKPLVNAQCTDEFYQ-GHSALHIAIEKRSLQCVKLLVE----N 112 (256)
T ss_dssp BTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HHHTTCSSCGGGCCCCSTTTT-TCCHHHHHHHTTCHHHHHHHHH----T
T ss_pred CCCCCCCHHHHHHHccccchHHHHHHHHhc-CCcccchhhhccccccccccc-CCCHHHHHHHcCCHHHHHHHHH----c
Confidence 478899999999999 999999999954 444332 2233 9999999999999999999999 7
Q ss_pred ccccccccCC-------------CChHHHHHHHcCCHHHHHHHHh---cCCCccccccCCCcHHHHHhhhhhccCcHH--
Q 021192 75 KVELEAQNMY-------------GETPLHMAAKNGCNEAAKLLLA---HGAFIEAKANNGMTPLHLSVWYSIRSEDYA-- 136 (316)
Q Consensus 75 ~~~~~~~~~~-------------g~t~Lh~a~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~-- 136 (316)
|++++.+|.. |+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.. ..++.+
T Consensus 113 ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~--~~~~~~~~ 190 (256)
T 2etb_A 113 GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMI--ADNSPENS 190 (256)
T ss_dssp TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH--CCSCHHHH
T ss_pred CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHc--ccCCchhh
Confidence 8899999876 9999999999999999999999 9999999999999999999922 178888
Q ss_pred -----HHHHHHhcCCCC-------CCCCCCCCCccccccCCCChHHHHHHHHHhHHHHHH
Q 021192 137 -----TVKTLLEYNADC-------SAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 184 (316)
Q Consensus 137 -----~~~~Ll~~ga~~-------~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~ 184 (316)
++++|+++|+++ +.+|..|+||||+|+.. +..+++++|++++.....
T Consensus 191 ~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~-g~~~~v~~Ll~~g~~~~~ 249 (256)
T 2etb_A 191 ALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKE-GKIEIFRHILQREFSGAA 249 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHh-CCHHHHHHHHhCCCCCCC
Confidence 999999999999 89999999999776664 567788888887766543
No 23
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=2e-31 Score=216.85 Aligned_cols=168 Identities=25% Similarity=0.310 Sum_probs=153.1
Q ss_pred CcccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccc
Q 021192 3 KNQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (316)
Q Consensus 3 ~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (316)
.+.+.+. +..|.||||+|+..|+.++++.|+...+.+++..+.. |.||||+|+..|+.+++++|++ .+++++.+
T Consensus 47 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~ 121 (223)
T 2f8y_A 47 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD-GTTPLILAARLAVEGMLEDLIN----SHADVNAV 121 (223)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHH----TTCCTTCB
T ss_pred cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC-CCcHHHHHHHhCcHHHHHHHHH----cCCCCcCc
Confidence 4555553 6789999999999999999999998777788998876 9999999999999999999999 78899999
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCcccc
Q 021192 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161 (316)
Q Consensus 82 ~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 161 (316)
|..|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+ ..++.+++++|+++|++++.+|..|.||+++
T Consensus 122 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~ 197 (223)
T 2f8y_A 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA----REGSYETAKVLLDHFANRDITDHMDRLPRDI 197 (223)
T ss_dssp CTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH----HHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHH----HcCCHHHHHHHHHcCCCCccccccCCCHHHH
Confidence 999999999999999999999999999999999999999999999 8899999999999999999999999999966
Q ss_pred ccCCCChHHHHHHHHHhHH
Q 021192 162 LSNGPGSAKLRELLLWHSE 180 (316)
Q Consensus 162 ~a~~~~~~~~~~lL~~~~~ 180 (316)
|+. .+..+++++|.+++.
T Consensus 198 A~~-~~~~~i~~~L~~~g~ 215 (223)
T 2f8y_A 198 AQE-RMHHDIVRLLDEYNL 215 (223)
T ss_dssp HHH-TTCHHHHHHHHHTTC
T ss_pred HHH-hcchHHHHHHHHcCC
Confidence 665 556778888887764
No 24
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.97 E-value=5.3e-31 Score=216.42 Aligned_cols=170 Identities=22% Similarity=0.270 Sum_probs=148.4
Q ss_pred CcccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCc-ccccc
Q 021192 3 KNQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK-VELEA 80 (316)
Q Consensus 3 ~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-~~~~~ 80 (316)
.+.+.+. +..|.||||+|+..|+.+++++|+ +.+.+++.++.. |.||||+|+..|+.+++++|++ .+ .+++.
T Consensus 33 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~~~~~~~~ 106 (237)
T 3b7b_A 33 AGANIDTCSEDQRTPLMEAAENNHLEAVKYLI-KAGALVDPKDAE-GSTCLHLAAKKGHYEVVQYLLS----NGQMDVNC 106 (237)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-TTTCCCCCCCTT-SCCHHHHHHHTTCHHHHHHHHT----TTCCCTTC
T ss_pred cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHH-hCCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHh----CCCCCccc
Confidence 4555554 667999999999999999999888 567888888876 9999999999999999999999 44 78899
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccc
Q 021192 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160 (316)
Q Consensus 81 ~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~ 160 (316)
+|..|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+ ..++.+++++|+++|++++.+|..|.||||
T Consensus 107 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~ 182 (237)
T 3b7b_A 107 QDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAA----FSGCVDIAEILLAAKCDLHAVNIHGDSPLH 182 (237)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHCCHHHHHHHHTTTCCTTCCCTTCCCHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH----HCCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999 889999999999999999999999999997
Q ss_pred cccCCCChHHHHHHHHHhHHHHH
Q 021192 161 HLSNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 161 ~~a~~~~~~~~~~lL~~~~~~~~ 183 (316)
+|+.. +..+++++|.+++.+..
T Consensus 183 ~A~~~-~~~~~v~~Ll~~gad~~ 204 (237)
T 3b7b_A 183 IAARE-NRYDCVVLFLSRDSDVT 204 (237)
T ss_dssp HHHHT-TCHHHHHHHHTTTCCTT
T ss_pred HHHHh-CCHhHHHHHHHcCCCCC
Confidence 66654 56677777877776544
No 25
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.97 E-value=3.2e-31 Score=216.91 Aligned_cols=161 Identities=29% Similarity=0.374 Sum_probs=123.2
Q ss_pred CCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHH
Q 021192 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (316)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh 90 (316)
..+.++||.|+..|+.+.+++++...+..++.++.. |.||||+|+..|+.+++++|++ .+++++.+|..|+||||
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~ 78 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQD-SRTALHWACSAGHTEIVEFLLQ----LGVPVNDKDDAGWSPLH 78 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCC-CCCHHHHHHHcCcHHHHHHHHH----hCCCCCCcCCCCCCHHH
Confidence 346778888888888888888887776667777665 8888888888888888888887 67777778888888888
Q ss_pred HHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHH
Q 021192 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAK 170 (316)
Q Consensus 91 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~ 170 (316)
+|+..|+.+++++|++.|++++..|..|.||||+|+ ..++.+++++|+++|++++.++..|.||||+|+..+ ..+
T Consensus 79 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~ 153 (231)
T 3aji_A 79 IAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA----SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG-NLK 153 (231)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT-CHH
T ss_pred HHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC-CHH
Confidence 888888888888888888888888888888888888 777888888888888888888888888886665543 455
Q ss_pred HHHHHHHhHHH
Q 021192 171 LRELLLWHSEE 181 (316)
Q Consensus 171 ~~~lL~~~~~~ 181 (316)
++++|..++.+
T Consensus 154 ~v~~Ll~~g~~ 164 (231)
T 3aji_A 154 MVHILLFYKAS 164 (231)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHhcCCC
Confidence 66666666543
No 26
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=3.5e-31 Score=211.97 Aligned_cols=163 Identities=25% Similarity=0.357 Sum_probs=146.6
Q ss_pred ccc-CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCC
Q 021192 6 DRR-SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY 84 (316)
Q Consensus 6 ~~~-~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 84 (316)
+.+ .+..|.||||+||..|+.++++.|+ +.+.+++.++.. |.||||+|+..|+.+++++|++. .+.+++.+|..
T Consensus 31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~ 105 (201)
T 3hra_A 31 QVDEVDTEGNTPLNIAVHNNDIEIAKALI-DRGADINLQNSI-SDSPYLYAGAQGRTEILAYMLKH---ATPDLNKHNRY 105 (201)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHH---SCCCTTCCCTT
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHhc---cCcccccccCC
Confidence 444 3678999999999999999999998 568999999876 99999999999999999999953 67899999999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcC-CCccccccCCCcHHHHHhhhhhccCc-----HHHHHHHHhcCCCCCCCCCCCCCc
Q 021192 85 GETPLHMAAKNGCNEAAKLLLAHG-AFIEAKANNGMTPLHLSVWYSIRSED-----YATVKTLLEYNADCSAKDNEGKTP 158 (316)
Q Consensus 85 g~t~Lh~a~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~a~~~~~~~~~-----~~~~~~Ll~~ga~~~~~~~~g~tp 158 (316)
|.||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+ ..++ .+++++|+++|++++.+|..|+||
T Consensus 106 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~----~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 181 (201)
T 3hra_A 106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV----GLREGNQLYQDIVKLLMENGADQSIKDNSGRTA 181 (201)
T ss_dssp SCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH----HSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH----HhccchhhHHHHHHHHHHCCCCCCccCCCCCCH
Confidence 999999999999999999999999 999999999999999999 6666 899999999999999999999999
Q ss_pred cccccCCCChHHHHHHHHHh
Q 021192 159 LDHLSNGPGSAKLRELLLWH 178 (316)
Q Consensus 159 l~~~a~~~~~~~~~~lL~~~ 178 (316)
||+|+.. +..+++++|.++
T Consensus 182 l~~A~~~-~~~~~~~~Ll~~ 200 (201)
T 3hra_A 182 MDYANQK-GYTEISKILAQY 200 (201)
T ss_dssp HHHHHHH-TCHHHHHHHHTC
T ss_pred HHHHHHc-CCHhHHHHHHhc
Confidence 9776664 566777777654
No 27
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.7e-31 Score=224.48 Aligned_cols=160 Identities=21% Similarity=0.268 Sum_probs=145.7
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHH-----hCCCHHHHHHHHcCCCCCccccccccC
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSA-----GYNKAEIVKSLLEWPGNDKVELEAQNM 83 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 83 (316)
.+..|.||||+||..|+.++++.|+..+..+++..+.. |.||||+|+ ..++.+++++|++ .+.+++..|.
T Consensus 107 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-g~tpL~~a~~~~~~~~~~~~~v~~Ll~----~g~~~~~~~~ 181 (276)
T 4hbd_A 107 ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRA-GYSPIMLTALATLKTQDDIETVLQLFR----LGNINAKASQ 181 (276)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTT-SCCHHHHGGGCCCCSHHHHHHHHHHHH----HSCTTCCCTT
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCC-CCCHHHHHHHHHhhhhhhHHHHHHHHH----cCCCccccCC
Confidence 47789999999999999999999997666699999987 999999999 6689999999999 7788889999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHh-cCCCCCCCCCCCCCccccc
Q 021192 84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHL 162 (316)
Q Consensus 84 ~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~~ 162 (316)
.|+||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+ ..++.+++++|++ .|++++.+|..|+||||+|
T Consensus 182 ~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~----~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A 257 (276)
T 4hbd_A 182 AGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCAC----EHGHKEIAGLLLAVPSCDISLTDRDGSTALMVA 257 (276)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH----HCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999 8899999999999 8999999999999999777
Q ss_pred cCCCChHHHHHHHHHh
Q 021192 163 SNGPGSAKLRELLLWH 178 (316)
Q Consensus 163 a~~~~~~~~~~lL~~~ 178 (316)
+.. +..+++++|+++
T Consensus 258 ~~~-g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 258 LDA-GQSEIASMLYSR 272 (276)
T ss_dssp HHH-TCHHHHHHHHHH
T ss_pred HHc-CCHHHHHHHHhc
Confidence 665 456666666654
No 28
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.97 E-value=2.9e-31 Score=216.60 Aligned_cols=165 Identities=22% Similarity=0.239 Sum_probs=143.2
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhC-CCcccC-CCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCc--cccccccCC
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLREN-PSLLNE-RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK--VELEAQNMY 84 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~-~~~~~~-~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~ 84 (316)
.+..|.||||+|+..|+.++++.|+..+ ..+++. .+.. |.||||+|+..|+.+++++|++ .+ ++++.+|..
T Consensus 32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~~~ 106 (228)
T 2dzn_A 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDS-GWTPFHIACSVGNLEVVKSLYD----RPLKPDLNKITNQ 106 (228)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTT-SCCHHHHHHHHCCHHHHHHHHS----SSSCCCTTCCCTT
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCC-CCCHHHHHHHcCCHHHHHHHHh----CCCCcccccCCcC
Confidence 5778999999999999999999998653 255555 5555 9999999999999999999999 55 888999999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcC-CCCCCCCCCCCCcccccc
Q 021192 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN-ADCSAKDNEGKTPLDHLS 163 (316)
Q Consensus 85 g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~~a 163 (316)
|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+ ..++.+++++|++.| ++++.+|..|+||||+|+
T Consensus 107 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~ 182 (228)
T 2dzn_A 107 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA----SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182 (228)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH----HTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHH
T ss_pred CCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHH----HcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999 889999999999999 999999999999997777
Q ss_pred CCCChHHHHHHHH-HhHHHHH
Q 021192 164 NGPGSAKLRELLL-WHSEEQR 183 (316)
Q Consensus 164 ~~~~~~~~~~lL~-~~~~~~~ 183 (316)
..+. .+++++|+ ++|++..
T Consensus 183 ~~~~-~~~v~~Ll~~~ga~~~ 202 (228)
T 2dzn_A 183 AEGH-GDAAVLLVEKYGAEYD 202 (228)
T ss_dssp HTTC-HHHHHHHHHHHCCCSC
T ss_pred HcCC-HHHHHHHHHhcCCCCC
Confidence 6554 55555665 7665543
No 29
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.6e-31 Score=223.60 Aligned_cols=165 Identities=24% Similarity=0.270 Sum_probs=128.6
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
.+..+.||||.|+..++.+.+..+|...|.++|.++.. |+||||+|+..|+.++|++|++ .+++++.++..|.||
T Consensus 48 ~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~-G~TpLh~A~~~g~~~~v~~Ll~----~~a~~~~~~~~g~t~ 122 (269)
T 4b93_B 48 ADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD-GSSPLHVAALHGRADLIPLLLK----HGANAGARNADQAVP 122 (269)
T ss_dssp ---------------------------CCCCTTCCCTT-SCCHHHHHHHTTCTTHHHHHHH----TTCCTTCCCTTCCCH
T ss_pred cCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC-CCCHHHHHHHcCcHHHHHHHHh----cCCCcCccCCCCCCc
Confidence 35678999999999988765444455789999999987 9999999999999999999999 788999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCCh
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~ 168 (316)
+|+|+..++.+++++|++.|++++.+|..|+||||+|+ ..|+.+++++|+++|+|++.++..|+||||+|+.. +.
T Consensus 123 l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~----~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~-g~ 197 (269)
T 4b93_B 123 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYAC----SGGHHELVALLLQHGASINASNNKGNTALHEAVIE-KH 197 (269)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH----HTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHT-TC
T ss_pred cccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHc-CC
Confidence 99999999999999999999999999999999999999 88999999999999999999999999999777664 56
Q ss_pred HHHHHHHHHhHHHHH
Q 021192 169 AKLRELLLWHSEEQR 183 (316)
Q Consensus 169 ~~~~~lL~~~~~~~~ 183 (316)
.+++++|+++|++..
T Consensus 198 ~~~v~~Ll~~Gad~~ 212 (269)
T 4b93_B 198 VFVVELLLLHGASVQ 212 (269)
T ss_dssp HHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHCCCCCC
Confidence 678888888876544
No 30
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.97 E-value=3.2e-30 Score=210.46 Aligned_cols=155 Identities=23% Similarity=0.323 Sum_probs=141.6
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhC-CCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCCh
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLREN-PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (316)
.+..|.||||+|+..|+.++++.|+..+ +.+++..+.. |.||||+|+..|+.+++++|++ .|++++.+|..|+|
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t 142 (228)
T 2dzn_A 68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIE----NGASVRIKDKFNQI 142 (228)
T ss_dssp CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSCC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcC-CCCHHHHHHHcCCHhHHHHHHH----cCCCccccCCCCCC
Confidence 4668999999999999999999999543 3888888876 9999999999999999999999 78999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcC-CCccccccCCCcHHHHHhhhhhccCcHHHHHHHH-hcCCCCCCCCCCCCCccccccCC
Q 021192 88 PLHMAAKNGCNEAAKLLLAHG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL-EYNADCSAKDNEGKTPLDHLSNG 165 (316)
Q Consensus 88 ~Lh~a~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll-~~ga~~~~~~~~g~tpl~~~a~~ 165 (316)
|||+|+..|+.+++++|++.| ++++.+|..|+||||+|+ ..++.+++++|+ ++|++++.+|..|+||+++|+..
T Consensus 143 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~----~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL----AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHH----HTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred HHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHH----HcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence 999999999999999999999 999999999999999999 899999999999 88999999999999999777542
Q ss_pred CChHHHHHHHH
Q 021192 166 PGSAKLRELLL 176 (316)
Q Consensus 166 ~~~~~~~~lL~ 176 (316)
.+.++|.
T Consensus 219 ----~~~~~l~ 225 (228)
T 2dzn_A 219 ----QVKKFFL 225 (228)
T ss_dssp ----THHHHHH
T ss_pred ----HHHHHHH
Confidence 4555554
No 31
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=218.85 Aligned_cols=168 Identities=24% Similarity=0.308 Sum_probs=124.4
Q ss_pred Cccccc-CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccc
Q 021192 3 KNQDRR-SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (316)
Q Consensus 3 ~~~~~~-~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (316)
.+.+.+ .+..|.||||+||..|+.++++.|+. .+.+++.++.. |.||||+|+..|+.+++++|++ .+++++..
T Consensus 81 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~ 154 (285)
T 3d9h_A 81 QGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTAD-WHTPLFNACVSGSWDCVNLLLQ----HGASVQPE 154 (285)
T ss_dssp TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCCCTT-CCCHHHHHHHHTCHHHHHHHHH----TTCCSSCS
T ss_pred CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCCC-CCCHHHHHHHcCHHHHHHHHHH----CCCCCCCC
Confidence 344444 35678888888888888888887774 57788888766 8888888888888888888888 56666544
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCcccc
Q 021192 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161 (316)
Q Consensus 82 ~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 161 (316)
+ .|+||||+|+..|+.+++++|++.|++++..|..|.||||+|+ ..++.+++++|+++|++++. +..|+||||+
T Consensus 155 ~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~ 228 (285)
T 3d9h_A 155 S-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC----ENQQRACVKKLLESGADVNQ-GKGQDSPLHA 228 (285)
T ss_dssp C-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHH----HTTCHHHHHHHHHTTCCTTC-CBTTBCHHHH
T ss_pred C-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH----HcCcHHHHHHHHHCCCCCCC-CCCCCCHHHH
Confidence 3 4778888888888888888888888888877888888888887 77777888888888877773 7777788855
Q ss_pred ccCCCChHHHHHHHHHhHHHHH
Q 021192 162 LSNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 162 ~a~~~~~~~~~~lL~~~~~~~~ 183 (316)
|+. .+..+++++|++++++..
T Consensus 229 A~~-~~~~~~v~~Ll~~gad~~ 249 (285)
T 3d9h_A 229 VVR-TASEELACLLMDFGADTQ 249 (285)
T ss_dssp HHH-TTCHHHHHHHHHTTCCTT
T ss_pred HHH-cCCHHHHHHHHHCCCCCC
Confidence 554 345566666666665543
No 32
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.97 E-value=1.2e-30 Score=214.81 Aligned_cols=160 Identities=31% Similarity=0.413 Sum_probs=78.8
Q ss_pred CCCChhhHHHHHhcCCHHHHHHHHh---hCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCC
Q 021192 10 RSAKPATIHGCAQSGDLLAFQRLLR---ENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (316)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~---~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (316)
++.|.||||+||..|+.+++++|+. ..+.+++..+.. |.||||+|+..|+.+++++|++ .|++++.+|..|+
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~ 80 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVITTLPSVVRLLVT----AGASPMALDRHGQ 80 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSC
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccccc-CCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCC
Confidence 4445555555555555555555543 244455555443 5555555555555555555555 4444555555555
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCC----CccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCC-CCCCCcccc
Q 021192 87 TPLHMAAKNGCNEAAKLLLAHGA----FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPLDH 161 (316)
Q Consensus 87 t~Lh~a~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~ 161 (316)
||||+|+..++.+++++|++.++ +++..|..|.||||+|+ ..++.+++++|+++|++++.++ ..|.||||+
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~ 156 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV----NTECQETVQLLLERGADIDAVDIKSGRSPLIH 156 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHH----HHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHH----HcCCHHHHHHHHHcCCCcccccccCCCcHHHH
Confidence 55555555555555555555444 44444555555555555 4444555555555555555444 445555533
Q ss_pred ccCCCChHHHHHHHHHhH
Q 021192 162 LSNGPGSAKLRELLLWHS 179 (316)
Q Consensus 162 ~a~~~~~~~~~~lL~~~~ 179 (316)
|+.. +..+++++|.+++
T Consensus 157 A~~~-~~~~~v~~Ll~~g 173 (241)
T 1k1a_A 157 AVEN-NSLSMVQLLLQHG 173 (241)
T ss_dssp HHHT-TCHHHHHHHHHTT
T ss_pred HHHc-CCHHHHHHHHHcC
Confidence 3332 2333444444443
No 33
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=217.50 Aligned_cols=159 Identities=23% Similarity=0.274 Sum_probs=136.3
Q ss_pred CChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHH
Q 021192 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (316)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~ 91 (316)
+|+||||+||..|+.++++.|+. .+.+++.++.. |.||||+|+..|+.+++++|++ .|++++.+|..|+||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~ 75 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLIS-QGWAVNIITAD-HVSPLHEACLGGHLSCVKILLK----HGAQVNGVTADWHTPLFN 75 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTT-CCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHH
Confidence 57899999999999999998885 57888888876 9999999999999999999999 788899999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHH
Q 021192 92 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKL 171 (316)
Q Consensus 92 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~ 171 (316)
|+..|+.+++++|++.|++++. +..|.||||+|+ ..++.+++++|+++|++++.+|..|.||||+|+.. +..++
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~ 149 (261)
T 2xai_A 76 ACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAA----RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN-QQRAC 149 (261)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHT-TCHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHH----HcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHh-CCHHH
Confidence 9999999999999999999885 456899999999 88999999999999999999999999999766654 45667
Q ss_pred HHHHHHhHHHH
Q 021192 172 RELLLWHSEEQ 182 (316)
Q Consensus 172 ~~lL~~~~~~~ 182 (316)
+++|.+++.+.
T Consensus 150 v~~Ll~~g~~~ 160 (261)
T 2xai_A 150 VKKLLESGADV 160 (261)
T ss_dssp HHHHHHHTCCT
T ss_pred HHHHHHcCCCC
Confidence 77777666543
No 34
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.97 E-value=4.1e-31 Score=222.53 Aligned_cols=165 Identities=26% Similarity=0.314 Sum_probs=146.5
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCC--cccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCC
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPS--LLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (316)
.+..|+||||+||..|+.++|++|+..+.. .++.++.. |.||||+|+..|+.+++++|++ .|++++.+|..|+
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~ 79 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL-GQTALHLAAILGEASTVEKLYA----AGAGVLVAERGGH 79 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCSSCCCTTSC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCC
Confidence 577899999999999999999999965332 27888876 9999999999999999999999 7899999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCC-----------------------------------------------ccccccCCC
Q 021192 87 TPLHMAAKNGCNEAAKLLLAHGAF-----------------------------------------------IEAKANNGM 119 (316)
Q Consensus 87 t~Lh~a~~~~~~~~~~~Ll~~g~~-----------------------------------------------~~~~~~~g~ 119 (316)
||||+|+..++.+++++|++.|++ ++..|..|.
T Consensus 80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 159 (282)
T 1oy3_D 80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159 (282)
T ss_dssp CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCc
Confidence 999999999999999999998765 778899999
Q ss_pred cHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCC-CCCccccccCCCChHHHHHHHHHhHHHHH
Q 021192 120 TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNE-GKTPLDHLSNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 120 t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~-g~tpl~~~a~~~~~~~~~~lL~~~~~~~~ 183 (316)
||||+|+ ..++.+++++|+++|++++.++.. |+||||+|+. .+...++++|+++|++..
T Consensus 160 t~L~~A~----~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~-~~~~~~v~~Ll~~gad~~ 219 (282)
T 1oy3_D 160 TPLHVAV----IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE-AQAASVLELLLKAGADPT 219 (282)
T ss_dssp CHHHHHH----HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH-TTCHHHHHHHHHTTCCTT
T ss_pred CHHHHHH----HcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHH-cCCHHHHHHHHHcCCCCc
Confidence 9999999 889999999999999999999864 9999977766 456778888887776544
No 35
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=2.5e-30 Score=219.77 Aligned_cols=164 Identities=26% Similarity=0.322 Sum_probs=129.7
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
.+..+.|+||.||..|+.++|+.|+. .+.++|..+.. |.||||+|+..|+.+++++|++ .|++++.+|..|+||
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~tp 109 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLE-RGADINYANVD-GLTALHQACIDDNVDMVKFLVE----NGANINQPDNEGWIP 109 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHH-HCCCTTCBCTT-CCBHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCH
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHH-cCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCcH
Confidence 34567888888888888888888884 45778888766 8888888888888888888888 677888888888888
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCcccccc----------------------------------------------------
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEAKAN---------------------------------------------------- 116 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~---------------------------------------------------- 116 (316)
||+|+..|+.+++++|+++|++++..|.
T Consensus 110 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (299)
T 1s70_B 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189 (299)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccC
Confidence 8888888888888888888887766543
Q ss_pred --------CCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhHHHHH
Q 021192 117 --------NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 117 --------~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~ 183 (316)
.|.||||+|+ ..|+.+++++|+++|++++.+|..|+||||+|+.. +..+++++|+++|++..
T Consensus 190 ~~~~~~~~~g~t~L~~A~----~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~-~~~~~v~~Ll~~gad~~ 259 (299)
T 1s70_B 190 INDVRHAKSGGTALHVAA----AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW-GKEEACRILVENLCDME 259 (299)
T ss_dssp CCCCCCTTTCCCHHHHHH----HHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTT
T ss_pred cchhhhcCCCCCHHHHHH----HCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhc-CCHHHHHHHHHcCCCCC
Confidence 4668888888 77888888888888888888888888888666554 45667777777776544
No 36
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.97 E-value=6.6e-31 Score=219.17 Aligned_cols=169 Identities=24% Similarity=0.301 Sum_probs=142.8
Q ss_pred CcccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccc
Q 021192 3 KNQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (316)
Q Consensus 3 ~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (316)
.+.+.+. +..|.||||+||..|+.++++.|++ .+.+++.++.. |.||||+|+..|+.+++++|++ .+++++.
T Consensus 25 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~- 97 (261)
T 2xai_A 25 QGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTAD-WHTPLFNACVSGSWDCVNLLLQ----HGASVQP- 97 (261)
T ss_dssp TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCSSC-
T ss_pred CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHH----CCCCCCC-
Confidence 4555554 6689999999999999999998884 57899998876 9999999999999999999999 6777765
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCcccc
Q 021192 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161 (316)
Q Consensus 82 ~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 161 (316)
+..|+||||+|+..|+.+++++|++.|++++..|..|.||||+|+ ..++.+++++|+++|++++. +..|.||||+
T Consensus 98 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~ 172 (261)
T 2xai_A 98 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC----ENQQRACVKKLLESGADVNQ-GKGQDSPLHA 172 (261)
T ss_dssp SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHH----HTTCHHHHHHHHHHTCCTTC-CBTTBCHHHH
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHH----HhCCHHHHHHHHHcCCCCCC-CCCCCChHHH
Confidence 345899999999999999999999999999999999999999999 88999999999999999985 8889999966
Q ss_pred ccCCCChHHHHHHHHHhHHHHHH
Q 021192 162 LSNGPGSAKLRELLLWHSEEQRK 184 (316)
Q Consensus 162 ~a~~~~~~~~~~lL~~~~~~~~~ 184 (316)
|+.. +..+++++|.++|++...
T Consensus 173 A~~~-~~~~~v~~Ll~~gad~~~ 194 (261)
T 2xai_A 173 VART-ASEELACLLMDFGADTQA 194 (261)
T ss_dssp HHHH-TCHHHHHHHHHTTCCTTC
T ss_pred HHHc-CCHHHHHHHHHcCCCCCC
Confidence 6654 566777788777765443
No 37
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.97 E-value=1.4e-30 Score=213.90 Aligned_cols=164 Identities=26% Similarity=0.361 Sum_probs=148.7
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
.+..|.||||+||..|+.+++++|+ +.+.+++..+.. |.||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus 7 ~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~ 80 (237)
T 3b7b_A 7 EHQNKRSPLHAAAEAGHVDICHMLV-QAGANIDTCSED-QRTPLMEAAENNHLEAVKYLIK----AGALVDPKDAEGSTC 80 (237)
T ss_dssp SSCCSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHT----TTCCCCCCCTTSCCH
T ss_pred ccCCCCCHHHHHHHcCcHHHHHHHH-HcCCCcCccCCC-CCCHHHHHHHhCCHHHHHHHHh----CCCCCCCCCCCCCcH
Confidence 4678999999999999999999888 468889998876 9999999999999999999999 788999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcC-CCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCC
Q 021192 89 LHMAAKNGCNEAAKLLLAHG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~ 167 (316)
||+|+..|+.+++++|++.| ++++..+..|.||||+|+ ..++.+++++|+++|++++.++..|.||||+|+.. +
T Consensus 81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~ 155 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT----EYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS-G 155 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-C
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHC-C
Confidence 99999999999999999998 899999999999999999 88999999999999999999999999999776664 5
Q ss_pred hHHHHHHHHHhHHHHH
Q 021192 168 SAKLRELLLWHSEEQR 183 (316)
Q Consensus 168 ~~~~~~lL~~~~~~~~ 183 (316)
..+++++|.+++.+..
T Consensus 156 ~~~~~~~Ll~~g~~~~ 171 (237)
T 3b7b_A 156 CVDIAEILLAAKCDLH 171 (237)
T ss_dssp CHHHHHHHHTTTCCTT
T ss_pred CHHHHHHHHHcCCCCC
Confidence 6677788887775543
No 38
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.97 E-value=1.4e-30 Score=214.22 Aligned_cols=174 Identities=23% Similarity=0.307 Sum_probs=152.2
Q ss_pred ccccc-CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccccccc
Q 021192 4 NQDRR-SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN 82 (316)
Q Consensus 4 ~~~~~-~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (316)
+.+.+ .+..|.||||+|+..|+.+++++|+ +.+.+++.++.. |.||||+|+..|+.+++++|++.+...+.+++.+|
T Consensus 36 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~ 113 (241)
T 1k1a_A 36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLV-TAGASPMALDRH-GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113 (241)
T ss_dssp TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCC
T ss_pred CCCCCcccccCCCHHHHHHHcCCHHHHHHHH-HcCCCccccCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccC
Confidence 44444 3667999999999999999999888 577888988876 99999999999999999999996554455899999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCccccc-cCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCcccc
Q 021192 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161 (316)
Q Consensus 83 ~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 161 (316)
..|+||||+|+..++.+++++|++.|++++..+ ..|.||||+|+ ..++.+++++|+++|++++.+|..|+||||+
T Consensus 114 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 189 (241)
T 1k1a_A 114 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV----ENNSLSMVQLLLQHGANVNAQMYSGSSALHS 189 (241)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 999999999999999999999999999999988 88999999999 8899999999999999999999999999977
Q ss_pred ccCCCChHHHHHHHHHhHHHHHH
Q 021192 162 LSNGPGSAKLRELLLWHSEEQRK 184 (316)
Q Consensus 162 ~a~~~~~~~~~~lL~~~~~~~~~ 184 (316)
|+.. +..+++++|.++|++...
T Consensus 190 A~~~-~~~~~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 190 ASGR-GLLPLVRTLVRSGADSSL 211 (241)
T ss_dssp HHHH-TCHHHHHHHHHTTCCTTC
T ss_pred HHHc-CCHHHHHHHHhcCCCCCC
Confidence 6654 556777788888776543
No 39
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=3.4e-31 Score=220.68 Aligned_cols=164 Identities=22% Similarity=0.225 Sum_probs=141.6
Q ss_pred CCCChhhHHHHH---hcCCHHHHHHHHhhCC----------CcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcc
Q 021192 10 RSAKPATIHGCA---QSGDLLAFQRLLRENP----------SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76 (316)
Q Consensus 10 ~~~~~t~L~~A~---~~g~~~~v~~ll~~~~----------~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~ 76 (316)
+..|.||||+|+ ..|+.++++.|+..+. .+.+..+.. |.||||+|+..|+.++|++|++ .|+
T Consensus 43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga 117 (260)
T 3jxi_A 43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYR-GQTALHIAIERRCKHYVELLVE----KGA 117 (260)
T ss_dssp TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEE-SBCHHHHHHHTTCHHHHHHHHH----TTC
T ss_pred cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccC-CCCHHHHHHHcCCHHHHHHHHh----CCC
Confidence 367999999999 7799999999997532 233444434 9999999999999999999999 788
Q ss_pred cccccc--------------CCCChHHHHHHHcCCHHHHHHHHh---cCCCccccccCCCcHHHHHhhhhhccCc-----
Q 021192 77 ELEAQN--------------MYGETPLHMAAKNGCNEAAKLLLA---HGAFIEAKANNGMTPLHLSVWYSIRSED----- 134 (316)
Q Consensus 77 ~~~~~~--------------~~g~t~Lh~a~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~a~~~~~~~~~----- 134 (316)
+++.+| ..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+ ..++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~----~~~~~~~~~ 193 (260)
T 3jxi_A 118 DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV----AIADNTREN 193 (260)
T ss_dssp CTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHH----HHCCSSHHH
T ss_pred CcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHH----HhccCchhH
Confidence 999998 689999999999999999999999 99999999999999999999 5555
Q ss_pred ----HHHHHHHHhcCCCC-------CCCCCCCCCccccccCCCChHHHHHHHHHhHHHHH
Q 021192 135 ----YATVKTLLEYNADC-------SAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 135 ----~~~~~~Ll~~ga~~-------~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~ 183 (316)
.+++++|+++|+++ +.+|..|+||||+|+.. +..+++++|++++....
T Consensus 194 ~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~-g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 194 TKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT-GKIGIFQHIIRREIADA 252 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHc-CCHHHHHHHHHhCCCcc
Confidence 68999999999999 67999999999776664 56778888887776544
No 40
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.97 E-value=5e-31 Score=216.99 Aligned_cols=163 Identities=18% Similarity=0.158 Sum_probs=118.2
Q ss_pred CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHH
Q 021192 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (316)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L 89 (316)
+..|.||||.|+..|+.+.++.|+ +.+.+++... . |.||||+|+..|+.+++++|++ .+++++.+|..|+|||
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll-~~g~~~~~~~-~-~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L 74 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERI-AHGMRVKFNP-L-PLALLLDSSLEGEFDLVQRIIY----EVDDPSLPNDEGITAL 74 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTS----TTSSCCCCCTTSCCHH
T ss_pred CccccccCchhhhhhhHHHHHHHh-ccCCCcccCc-h-hhHHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHH
Confidence 457999999999999999999888 5778888763 3 8999999999999999999999 7889999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCC-Ccccccc-CCCC
Q 021192 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGK-TPLDHLS-NGPG 167 (316)
Q Consensus 90 h~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~-tpl~~~a-~~~~ 167 (316)
|+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|++++.++..|. ||||++. ...+
T Consensus 75 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g 150 (239)
T 1ycs_B 75 HNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA----SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG 150 (239)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhc
Confidence 9999999999999999999999999999999999999 88999999999999999999998887 9997663 4566
Q ss_pred hHHHHHHHHHhHHHHH
Q 021192 168 SAKLRELLLWHSEEQR 183 (316)
Q Consensus 168 ~~~~~~lL~~~~~~~~ 183 (316)
..+++++|..++++..
T Consensus 151 ~~~~~~~Ll~~~a~~~ 166 (239)
T 1ycs_B 151 YTQCSQFLYGVQEKMG 166 (239)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHhhhccc
Confidence 7888888888776543
No 41
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=6.1e-31 Score=226.43 Aligned_cols=155 Identities=21% Similarity=0.230 Sum_probs=136.7
Q ss_pred CCcccccC--CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCC---HHHHHHHHcCCCCCcc
Q 021192 2 QKNQDRRS--RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK---AEIVKSLLEWPGNDKV 76 (316)
Q Consensus 2 ~~~~~~~~--~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~---~~~v~~Ll~~~~~~~~ 76 (316)
+.+.+.+. +..|.||||+||..|+.++|+.|| +.+++++.++.. |.||||+|+..|+ .++++.|+++ ..+
T Consensus 118 ~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll-~~Gad~n~~d~~-g~TpLh~A~~~g~~~~~~~~~~ll~~---~~~ 192 (327)
T 1sw6_A 118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYGDNM-GESCLVKAVKSVNNYDSGTFEALLDY---LYP 192 (327)
T ss_dssp TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTBCCTT-CCCHHHHHHHSSHHHHTTCHHHHHHH---HGG
T ss_pred hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCC-CCCHHHHHHHhcccccHHHHHHHHHh---hhc
Confidence 34566664 778999999999999999999888 568999999987 9999999999998 7888888883 236
Q ss_pred ccccccCCCChHHHHHHH----cCCHHHHHHHHhcCC-------------------------------------------
Q 021192 77 ELEAQNMYGETPLHMAAK----NGCNEAAKLLLAHGA------------------------------------------- 109 (316)
Q Consensus 77 ~~~~~~~~g~t~Lh~a~~----~~~~~~~~~Ll~~g~------------------------------------------- 109 (316)
+++.+|..|+||||+|+. .|+.+++++|++.++
T Consensus 193 ~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll 272 (327)
T 1sw6_A 193 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 272 (327)
T ss_dssp GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHH
T ss_pred cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHH
Confidence 899999999999999999 899999999998743
Q ss_pred --CccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCC
Q 021192 110 --FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165 (316)
Q Consensus 110 --~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~ 165 (316)
++|.+|..|+||||+|+ ..++.+++++|+++|+|++.+|..|+||||+|+..
T Consensus 273 ~~~~n~~d~~G~TpLh~A~----~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 273 ANMLNAQDSNGDTCLNIAA----RLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326 (327)
T ss_dssp HHTTTCCCTTSCCHHHHHH----HHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred HhCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence 57888899999999999 88999999999999999999999999999887753
No 42
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.97 E-value=5.5e-31 Score=202.38 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=118.5
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCCh-
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET- 87 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t- 87 (316)
.+..|.||||+||..|+.+++++|+. .+.+++.++.. |.||||+|+ .|+.+++++|++ .|++++.+|..|+|
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~-~~~~~~v~~Ll~----~g~~~~~~d~~g~tt 80 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLE-AGANPNAPNSY-GRRPIQVMM-MGSARVAELLLL----HGAEPNCADPATLTR 80 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCCCSS-SCCTTTSSC-TTCHHHHHHHHT----TTCCCCCCCTTTCCC
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCC-CCCHHHHHH-cCCHHHHHHHHH----cCCCCCCcCCCCCcH
Confidence 46678999999999999999999994 58899999876 999999985 999999999999 78999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccc
Q 021192 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160 (316)
Q Consensus 88 ~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~ 160 (316)
|||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|+++|++++.++..|.||.+
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 81 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE----ELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHH----HHTCHHHHHHHSSCC---------------
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH----HhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 999999999999999999999999999999999999999 889999999999999999999999999984
No 43
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=5.1e-31 Score=219.14 Aligned_cols=161 Identities=23% Similarity=0.253 Sum_probs=140.5
Q ss_pred ChhhHHHHHhcCCHHHHHHHHh---hCCCcccC----CCCCCCCcHHHHHHhC---CCHHHHHHHHcCCCCCcccccc--
Q 021192 13 KPATIHGCAQSGDLLAFQRLLR---ENPSLLNE----RNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEA-- 80 (316)
Q Consensus 13 ~~t~L~~A~~~g~~~~v~~ll~---~~~~~~~~----~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~-- 80 (316)
|.||||.||..|+.+.++.++. +.+.+++. ++.. |.||||+|+.. |+.+++++|++ .+++++.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~-g~t~L~~A~~~~~~g~~~~v~~Ll~----~g~~~~~~~ 76 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGST-GKTCLMKAVLNLQDGVNACIMPLLQ----IDKDSGNPK 76 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTT-TBCHHHHHHHTCBTTBCTTHHHHHH----HHHHTTCSS
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCC-CCCHHHHHHHccccchHHHHHHHHh----cCCcccchh
Confidence 7899999999999985543332 56788888 6766 99999999999 99999999999 5666553
Q ss_pred ---------ccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccC-------------CCcHHHHHhhhhhccCcHHHH
Q 021192 81 ---------QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN-------------GMTPLHLSVWYSIRSEDYATV 138 (316)
Q Consensus 81 ---------~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~-------------g~t~L~~a~~~~~~~~~~~~~ 138 (316)
+|..|+||||+|+..|+.+++++|+++|++++..|.. |.||||+|+ ..++.+++
T Consensus 77 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~----~~~~~~~v 152 (256)
T 2etb_A 77 PLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA----CTKQWDVV 152 (256)
T ss_dssp CGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHH----HTTCHHHH
T ss_pred hhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHH----HcCCHHHH
Confidence 3477999999999999999999999999999999886 999999999 88999999
Q ss_pred HHHHh---cCCCCCCCCCCCCCccccccCC-CChHH-------HHHHHHHhHHHH
Q 021192 139 KTLLE---YNADCSAKDNEGKTPLDHLSNG-PGSAK-------LRELLLWHSEEQ 182 (316)
Q Consensus 139 ~~Ll~---~ga~~~~~~~~g~tpl~~~a~~-~~~~~-------~~~lL~~~~~~~ 182 (316)
++|++ +|++++.+|..|+||||+|+.. .+..+ ++++|+++|++.
T Consensus 153 ~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~ 207 (256)
T 2etb_A 153 TYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL 207 (256)
T ss_dssp HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence 99999 9999999999999999888762 34555 889999888776
No 44
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=8.1e-31 Score=220.04 Aligned_cols=162 Identities=23% Similarity=0.268 Sum_probs=140.6
Q ss_pred CCCCChhhHHHHHhc---CCHHHHHHHHhhCC----------CcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCc
Q 021192 9 SRSAKPATIHGCAQS---GDLLAFQRLLRENP----------SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK 75 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~---g~~~~v~~ll~~~~----------~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~ 75 (316)
.+..|.||||+||.. |+.++++.|+..+. ......+.. |.||||+|+..|+.+++++|++ .|
T Consensus 50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~-g~tpL~~A~~~g~~~~v~~Ll~----~g 124 (273)
T 2pnn_A 50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYK-GQTALHIAIERRNMTLVTLLVE----NG 124 (273)
T ss_dssp CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTT-TCCHHHHHHHTTCHHHHHHHHH----TT
T ss_pred cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCC-CCCHHHHHHHcCCHHHHHHHHH----CC
Confidence 367899999999986 99999999997532 111224444 9999999999999999999999 78
Q ss_pred cccccccC--------------CCChHHHHHHHcCCHHHHHHHHh---cCCCccccccCCCcHHHHHhhhhhccCc----
Q 021192 76 VELEAQNM--------------YGETPLHMAAKNGCNEAAKLLLA---HGAFIEAKANNGMTPLHLSVWYSIRSED---- 134 (316)
Q Consensus 76 ~~~~~~~~--------------~g~t~Lh~a~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~a~~~~~~~~~---- 134 (316)
++++.++. .|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+ ..++
T Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~----~~~~~~~~ 200 (273)
T 2pnn_A 125 ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALV----EVADNTVD 200 (273)
T ss_dssp CCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHH----HHCCSCHH
T ss_pred CCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHH----HccCcchh
Confidence 89999987 79999999999999999999999 99999999999999999999 6666
Q ss_pred -----HHHHHHHHhcCCCCC-------CCCCCCCCccccccCCCChHHHHHHHHHhHH
Q 021192 135 -----YATVKTLLEYNADCS-------AKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180 (316)
Q Consensus 135 -----~~~~~~Ll~~ga~~~-------~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~ 180 (316)
.+++++|+++|++++ .+|..|+||||+|+. .+..+++++|+++|+
T Consensus 201 ~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~-~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 201 NTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAAS-SGKIGVLAYILQREI 257 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHH-TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHH-hChHHHHHHHHHCCC
Confidence 789999999999997 489999999977665 456778888888876
No 45
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.97 E-value=8.6e-31 Score=228.93 Aligned_cols=125 Identities=24% Similarity=0.259 Sum_probs=71.8
Q ss_pred CCcHHHHHHhCC--CHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCC-----ccccccCCCc
Q 021192 48 AQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF-----IEAKANNGMT 120 (316)
Q Consensus 48 g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t 120 (316)
|.||||+|+..| +.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|++.|++ ++..|..|.|
T Consensus 138 g~t~L~~A~~~g~~~~~~v~~Ll~----~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t 213 (364)
T 3ljn_A 138 GQTALHWCVGLGPEYLEMIKILVQ----LGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS 213 (364)
T ss_dssp CCCHHHHHHHSCGGGHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC
T ss_pred CCCHHHHHHHcCCchHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc
Confidence 555555555555 5555555555 4555555666666666666666666666666655555 5555666666
Q ss_pred HHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhHHH
Q 021192 121 PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181 (316)
Q Consensus 121 ~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~ 181 (316)
|||+|+ ..++.+++++|+++|+|++.+|..|+||||+|+. .+..+++++|++++++
T Consensus 214 ~L~~A~----~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~-~g~~~~v~~Ll~~~~~ 269 (364)
T 3ljn_A 214 HLHWAI----LINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVR-AAMVLLTKELLQKTDV 269 (364)
T ss_dssp TTHHHH----TTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH-TCCHHHHHHHHHHSCH
T ss_pred HHHHHH----HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH-hChHHHHHHHHHcCCc
Confidence 666666 5556666666666666666666666666644433 2344455555544433
No 46
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=1.6e-30 Score=221.04 Aligned_cols=163 Identities=25% Similarity=0.300 Sum_probs=141.8
Q ss_pred CcccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccc
Q 021192 3 KNQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (316)
Q Consensus 3 ~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (316)
.+.+.+. +..|.||||+||..|+.++++.|+. .+.+++.++.. |.||||+|+..|+.+++++|++ .|++++.+
T Consensus 62 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~-g~tpL~~A~~~g~~~~v~~Ll~----~g~~~~~~ 135 (299)
T 1s70_B 62 RGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNE-GWIPLHAAASCGYLDIAEYLIS----QGAHVGAV 135 (299)
T ss_dssp HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTCC
T ss_pred cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHh----CCCCCCCc
Confidence 4555553 6789999999999999999998884 78999999876 9999999999999999999999 66666655
Q ss_pred c------------------------------------------------------------CCCChHHHHHHHcCCHHHH
Q 021192 82 N------------------------------------------------------------MYGETPLHMAAKNGCNEAA 101 (316)
Q Consensus 82 ~------------------------------------------------------------~~g~t~Lh~a~~~~~~~~~ 101 (316)
| ..|.||||+|+..|+.+++
T Consensus 136 ~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v 215 (299)
T 1s70_B 136 NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL 215 (299)
T ss_dssp CTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHH
T ss_pred CCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHH
Confidence 4 3577889999999999999
Q ss_pred HHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHH
Q 021192 102 KLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 176 (316)
Q Consensus 102 ~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~ 176 (316)
++|++.|++++.+|..|.||||+|+ ..++.+++++|+++|++++.+|..|.||||+|+. .....+.+++.
T Consensus 216 ~~Ll~~g~d~~~~d~~g~tpL~~A~----~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~-~~~~~l~~l~~ 285 (299)
T 1s70_B 216 KLLIQARYDVNIKDYDGWTPLHAAA----HWGKEEACRILVENLCDMEAVNKVGQTAFDVADE-DILGYLEELQK 285 (299)
T ss_dssp HHHHTTTCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS-GGGHHHHHHHH
T ss_pred HHHHHcCCCCCCcCCCCCcHHHHHH----hcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999 8999999999999999999999999999976643 44444544444
No 47
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.97 E-value=6.3e-30 Score=215.96 Aligned_cols=161 Identities=22% Similarity=0.275 Sum_probs=146.4
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
.+..|+||||+||..|+.++++.|+. .+.+++.++.. |.||||+|+..|+.+++++|++ .+++++.+|..|+||
T Consensus 55 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~t~ 128 (285)
T 3d9h_A 55 DAVSDWSPMHEAAIHGHQLSLRNLIS-QGWAVNIITAD-HVSPLHEACLGGHLSCVKILLK----HGAQVNGVTADWHTP 128 (285)
T ss_dssp SSCCSCCHHHHHHHTTCHHHHHHHHH-TTCCSCEECTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCSSCCCTTCCCH
T ss_pred CCccCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCC-CCCHHHHHHHCCcHHHHHHHHH----CCCCCCCCCCCCCCH
Confidence 57789999999999999999999995 67889999877 9999999999999999999999 789999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCCh
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~ 168 (316)
||+|+..|+.+++++|++.|++++..+ .|.||||+|+ ..++.+++++|+++|++++.+|..|+||||+|+.. +.
T Consensus 129 L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~----~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-~~ 202 (285)
T 3d9h_A 129 LFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAA----RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN-QQ 202 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHH----HHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHT-TC
T ss_pred HHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-Cc
Confidence 999999999999999999999998654 5999999999 88999999999999999999999999999776664 55
Q ss_pred HHHHHHHHHhHHH
Q 021192 169 AKLRELLLWHSEE 181 (316)
Q Consensus 169 ~~~~~lL~~~~~~ 181 (316)
.+++++|++.+.+
T Consensus 203 ~~~v~~Ll~~ga~ 215 (285)
T 3d9h_A 203 RACVKKLLESGAD 215 (285)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCC
Confidence 6777777776654
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=1.6e-30 Score=218.33 Aligned_cols=168 Identities=24% Similarity=0.287 Sum_probs=141.7
Q ss_pred ccCCCCChhhHHHHHhcCCHHHHHHHHh---hCCCccc----CCCCCCCCcHHHHHHhC---CCHHHHHHHHcCCCCCcc
Q 021192 7 RRSRSAKPATIHGCAQSGDLLAFQRLLR---ENPSLLN----ERNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKV 76 (316)
Q Consensus 7 ~~~~~~~~t~L~~A~~~g~~~~v~~ll~---~~~~~~~----~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~ 76 (316)
...+..|.|+||.||..|+.++|+.|+. ..+.+++ ..+.. |.||||+|+.. |+.+++++|++ .|+
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~-g~tpL~~A~~~~~~g~~~~v~~Ll~----~ga 81 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPET-GKTCLLKAMLNLHNGQNDTIALLLD----VAR 81 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTT-CCCHHHHHHHSCBTTBCHHHHHHHH----HHH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcC-CCCHHHHHHHHHhcCChHHHHHHHH----hhc
Confidence 3457889999999999999999999986 3555554 23444 99999999986 99999999999 444
Q ss_pred c-------ccc----ccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccc--------------CCCcHHHHHhhhhhc
Q 021192 77 E-------LEA----QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN--------------NGMTPLHLSVWYSIR 131 (316)
Q Consensus 77 ~-------~~~----~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~--------------~g~t~L~~a~~~~~~ 131 (316)
+ ++. +|..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+ .
T Consensus 82 ~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~----~ 157 (273)
T 2pnn_A 82 KTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA----C 157 (273)
T ss_dssp HTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHH----H
T ss_pred cccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHH----H
Confidence 3 222 567899999999999999999999999999999997 7999999999 8
Q ss_pred cCcHHHHHHHHh---cCCCCCCCCCCCCCccccccCCCCh--------HHHHHHHHHhHHHHH
Q 021192 132 SEDYATVKTLLE---YNADCSAKDNEGKTPLDHLSNGPGS--------AKLRELLLWHSEEQR 183 (316)
Q Consensus 132 ~~~~~~~~~Ll~---~ga~~~~~~~~g~tpl~~~a~~~~~--------~~~~~lL~~~~~~~~ 183 (316)
.++.+++++|++ +|++++.+|..|+||||+|+..++. ..++++|+.++++..
T Consensus 158 ~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n 220 (273)
T 2pnn_A 158 TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH 220 (273)
T ss_dssp TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence 899999999999 9999999999999999888765542 578888888887653
No 49
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=3.4e-31 Score=217.58 Aligned_cols=164 Identities=27% Similarity=0.363 Sum_probs=143.9
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCC---CcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCC
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENP---SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG 85 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~---~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g 85 (316)
.+..|.||||+|+..|+.++++.|+.... .+++.++.. |.||||+|+..|+.+++++|++ .|++++.+|..|
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g 78 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEALLG----AGCDPELRDFRG 78 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTT-CCCHHHHHHHTTCHHHHHCCCS----CCCCSCCCCTTC
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCC
Confidence 57789999999999999999998886543 378888876 9999999999999999999999 789999999999
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCC------ccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCC-CCCCc
Q 021192 86 ETPLHMAAKNGCNEAAKLLLAHGAF------IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN-EGKTP 158 (316)
Q Consensus 86 ~t~Lh~a~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~-~g~tp 158 (316)
+||||+|+..|+.+++++|++.|++ ++..+..|.||||+|+ ..++.+++++|+++|++++.++. .|+||
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~~g~tp 154 (236)
T 1ikn_D 79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS----IHGYLGIVELLVSLGADVNAQEPCNGRTA 154 (236)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHH----HTTCHHHHHHHHHHTCCTTCCCTTTCCCH
T ss_pred CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCCCCCCCCCCH
Confidence 9999999999999999999999876 5788899999999999 88999999999999999999998 99999
Q ss_pred cccccCCCChHHHHHHHHHhHHHH
Q 021192 159 LDHLSNGPGSAKLRELLLWHSEEQ 182 (316)
Q Consensus 159 l~~~a~~~~~~~~~~lL~~~~~~~ 182 (316)
||+|+.. +...++++|+++|++.
T Consensus 155 L~~A~~~-~~~~~v~~Ll~~ga~~ 177 (236)
T 1ikn_D 155 LHLAVDL-QNPDLVSLLLKCGADV 177 (236)
T ss_dssp HHHHHHT-TCHHHHHHHHTTTCCS
T ss_pred HHHHHHc-CCHHHHHHHHHcCCCC
Confidence 9777664 5667888888777543
No 50
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.97 E-value=6.9e-31 Score=221.79 Aligned_cols=162 Identities=19% Similarity=0.115 Sum_probs=131.5
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
.+..|.||||+||..|+.++++.|+. .+.+++..+ |.||||+|+..|+.+++++|++ .|++++.+|..|+||
T Consensus 27 ~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~---g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~d~~g~t~ 98 (285)
T 3kea_A 27 ADVHGHSASYYAIADNNVRLVCTLLN-AGALKNLLE---NEFPLHQAATLEDTKIVKILLF----SGLDDSQFDDKGNTA 98 (285)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHH-TTGGGSCCT---TCCHHHHHTTSSSCHHHHHHHH----TTCCTTCCCTTSCCH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCC---CCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCcH
Confidence 46778999999999999999998884 577877774 7899999999999999999998 788888888899999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccccCC-CcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCC
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNG-MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g-~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~ 167 (316)
||+|+..|+.+++++|+++|++++..|..| .||||+|+ ..++.+++++|+++|+++... ..|+||||+|+. .+
T Consensus 99 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~-~g 172 (285)
T 3kea_A 99 LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV----MLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIK-NG 172 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHH----HTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHH-TT
T ss_pred HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH----HcCCHHHHHHHHhCCCccccc-cCCccHHHHHHH-cC
Confidence 999999999999999999999999888888 78999888 778888888888888776332 277888866554 44
Q ss_pred hHHHHHHHHHhHHHHHH
Q 021192 168 SAKLRELLLWHSEEQRK 184 (316)
Q Consensus 168 ~~~~~~lL~~~~~~~~~ 184 (316)
..+++++|++++++...
T Consensus 173 ~~~~v~~Ll~~gad~n~ 189 (285)
T 3kea_A 173 HVDMMILLLDYMTSTNT 189 (285)
T ss_dssp CHHHHHHHHHHHHHTCT
T ss_pred hHHHHHHHHHcCCCCCc
Confidence 56677777777766543
No 51
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.97 E-value=1.6e-30 Score=205.24 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=134.4
Q ss_pred ChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCH----HHHHHHHcCCCCCccccccccCCCChH
Q 021192 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKA----EIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 13 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
+.++|+.|++.|+++.++.++... ++..++..|+||||+|+..|+. +++++||+ .|+++|.+|..|+||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~Tp 78 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLIN----KGADIKSRTKEGTTL 78 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH----TTCCSSCCCTTCCCT
T ss_pred cccHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHH----CCCCCCCCCCCCCcH
Confidence 568899999999999999998654 3344422399999999999975 59999999 899999999999999
Q ss_pred HHHHHHcCC------HHHHHHHHhcCCCccccccCCC-cHHHHHhhhhhc-cCcHHHHHHHHh-cCCCCCCCCCCCCCcc
Q 021192 89 LHMAAKNGC------NEAAKLLLAHGAFIEAKANNGM-TPLHLSVWYSIR-SEDYATVKTLLE-YNADCSAKDNEGKTPL 159 (316)
Q Consensus 89 Lh~a~~~~~------~~~~~~Ll~~g~~~~~~~~~g~-t~L~~a~~~~~~-~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl 159 (316)
||+|+..++ .+++++|+++|+++|.+|..|+ ||||+|+..+.. .++.+++++|++ +|+|++.+|..|+|||
T Consensus 79 Lh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL 158 (186)
T 3t8k_A 79 FFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH
Confidence 999999887 5789999999999999999999 999999931100 234679999999 9999999999999999
Q ss_pred ccccCCCChHHHHHHHHHhHH
Q 021192 160 DHLSNGPGSAKLRELLLWHSE 180 (316)
Q Consensus 160 ~~~a~~~~~~~~~~lL~~~~~ 180 (316)
|+|+. .+...++++|.....
T Consensus 159 ~~A~~-~~~~~~v~~L~~~~~ 178 (186)
T 3t8k_A 159 EFVKR-CQKPIALKMMEDYIK 178 (186)
T ss_dssp HHHHT-TTCHHHHHHHHHHHH
T ss_pred HHHHH-cCCHHHHHHHHHHHH
Confidence 76665 456677788876653
No 52
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.97 E-value=2.8e-30 Score=218.08 Aligned_cols=172 Identities=12% Similarity=0.045 Sum_probs=150.3
Q ss_pred CCcccccCCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccc
Q 021192 2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (316)
Q Consensus 2 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (316)
+.+.+.+.. .|.||||+||..|+.++++.|+ +.+.+++.++.. |.||||+|+..|+.+++++|++ .|++++.+
T Consensus 52 ~~g~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~ 124 (285)
T 3kea_A 52 NAGALKNLL-ENEFPLHQAATLEDTKIVKILL-FSGLDDSQFDDK-GNTALYYAVDSGNMQTVKLFVK----KNWRLMFY 124 (285)
T ss_dssp HTTGGGSCC-TTCCHHHHHTTSSSCHHHHHHH-HTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----HCGGGGGC
T ss_pred hCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCC-CCcHHHHHHHcCCHHHHHHHHh----cCCCCCcc
Confidence 345565555 5899999999999999999888 568999999876 9999999999999999999999 78999999
Q ss_pred cCCC-ChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCc-c
Q 021192 82 NMYG-ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTP-L 159 (316)
Q Consensus 82 ~~~g-~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tp-l 159 (316)
|..| .||||+|+..|+.+++++|++.|+++... ..|.||||+|+ ..++.+++++|+++|++++.+|..|+|| |
T Consensus 125 ~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~----~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L 199 (285)
T 3kea_A 125 GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITI----KNGHVDMMILLLDYMTSTNTNNSLLFIPDI 199 (285)
T ss_dssp SSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHH----HTTCHHHHHHHHHHHHHTCTTCCCBCCTTH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHH----HcChHHHHHHHHHcCCCCCcccCCCCChHH
Confidence 9999 79999999999999999999999887432 38999999999 8899999999999999999999999998 8
Q ss_pred ccccCCCChHHHHHHHHHhHHHHHHHh
Q 021192 160 DHLSNGPGSAKLRELLLWHSEEQRKRR 186 (316)
Q Consensus 160 ~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (316)
|+|+. .+..+++++|+++|++....+
T Consensus 200 ~~A~~-~~~~~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 200 KLAID-NKDIEMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHH-HTCHHHHHHHTTSCBCSTTTT
T ss_pred HHHHH-cCCHHHHHHHHHcCCCCCCCC
Confidence 66655 566788888988887655443
No 53
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.96 E-value=5.1e-30 Score=192.31 Aligned_cols=128 Identities=20% Similarity=0.231 Sum_probs=104.4
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCC-CCh
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY-GET 87 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-g~t 87 (316)
.+..|.||||+|+..|+.+++++|+. .+.+++.++.. |.||||+|+. |+.+++++|++ .+++++.+|.. |+|
T Consensus 8 ~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~-~~~~~v~~Ll~----~g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 8 LGGSSDAGLATAAARGQVETVRQLLE-AGADPNALNRF-GRRPIQVMMM-GSAQVAELLLL----HGAEPNCADPATLTR 80 (136)
T ss_dssp CCCCCSCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-CCTTTTTSTT-SCHHHHHHHHH----HTCCSSCCBTTTTBC
T ss_pred CCCCCccHHHHHHHcCCHHHHHHHHH-cCCCcCCcCCC-CCCHHHHHHc-CCHHHHHHHHH----CCCCCCCcCCCCCCC
Confidence 35678888888888888888887774 46778887765 8888888888 88888888888 67788888888 888
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCC
Q 021192 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147 (316)
Q Consensus 88 ~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~ 147 (316)
|||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|+++|+|
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~----~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE----EQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHH----HHTCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH----HcCCHHHHHHHHHcCCC
Confidence 888888888888888888888888888888888888888 77788888888888775
No 54
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.96 E-value=5e-30 Score=224.09 Aligned_cols=167 Identities=18% Similarity=0.176 Sum_probs=124.8
Q ss_pred CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCC----------------
Q 021192 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN---------------- 73 (316)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~---------------- 73 (316)
+..|.||||+||..|+.++|++|+. .+.+++.++.. |.||||+|+..|+.++|++|++++++
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLIE-TGVSPTIQNRF-GCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTT-CCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHc
Confidence 4456666666666666666666663 35566666554 66666666666666666666653221
Q ss_pred -----------C----cccccc-----------------ccCCCChHHHHHHHcC--CHHHHHHHHhcCCCccccccCCC
Q 021192 74 -----------D----KVELEA-----------------QNMYGETPLHMAAKNG--CNEAAKLLLAHGAFIEAKANNGM 119 (316)
Q Consensus 74 -----------~----~~~~~~-----------------~~~~g~t~Lh~a~~~~--~~~~~~~Ll~~g~~~~~~~~~g~ 119 (316)
. +++++. +|..|+||||+|+..| +.+++++|++.|++++..|..|.
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~ 174 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADE 174 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSC
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCC
Confidence 1 334443 7888999999999999 99999999999999999999999
Q ss_pred cHHHHHhhhhhccCcHHHHHHHHhcCCC-----CCCCCCCCCCccccccCCCChHHHHHHHHHhHHHHH
Q 021192 120 TPLHLSVWYSIRSEDYATVKTLLEYNAD-----CSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 120 t~L~~a~~~~~~~~~~~~~~~Ll~~ga~-----~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~ 183 (316)
||||+|+ ..++.+++++|+++|++ ++.+|..|+||||+|+. .+..+++++|+++|++..
T Consensus 175 t~L~~A~----~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~gad~~ 238 (364)
T 3ljn_A 175 TPLMRAM----EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAIL-INWEDVAMRFVEMGIDVN 238 (364)
T ss_dssp CHHHHHH----HTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHT-TTCHHHHHHHHTTTCCTT
T ss_pred CHHHHHH----HcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHH-cCCHHHHHHHHHcCCCCC
Confidence 9999999 88999999999999988 99999999999976665 456778888887776543
No 55
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=4.9e-30 Score=209.48 Aligned_cols=147 Identities=21% Similarity=0.188 Sum_probs=133.9
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
.+.++.|+||+||..|+.++++.|+. .+.+++.++.. |.||||+|+..|+.+++++|++ .|++++.+|..|+||
T Consensus 17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~----~ga~~n~~d~~g~tp 90 (229)
T 2vge_A 17 ARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQPNEE-GITALHNAICGANYSIVDFLIT----AGANVNSPDSHGWTP 90 (229)
T ss_dssp TTSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCH
T ss_pred cccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCH
Confidence 35578899999999999999999995 57799999877 9999999999999999999999 789999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccc-cCCCcHHHHH--hhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCC
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLS--VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~a--~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~ 165 (316)
||+|+..|+.+++++|++.|++++..+ ..|+||||+| + ..++.+++++|+++|++++.+|..|.||++.++..
T Consensus 91 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~----~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~ 166 (229)
T 2vge_A 91 LHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPY----REGYADCATYLADVEQSMGLMNSGAVYALWDYSAE 166 (229)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTT----STTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCS
T ss_pred HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHH----hcChHHHHHHHHHcCCCcccccCCchHHHHHHhhc
Confidence 999999999999999999999999986 6999999999 8 88999999999999999888888888888544443
No 56
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=2.4e-29 Score=224.97 Aligned_cols=162 Identities=30% Similarity=0.407 Sum_probs=128.2
Q ss_pred CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHH
Q 021192 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (316)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L 89 (316)
+..|.||||+|+..|+.++++.|+ +.+.+++..+.. |.||||+|+..|+.+++++|++ .+++++.+|..|+|||
T Consensus 209 ~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L 282 (437)
T 1n11_A 209 AWNGYTPLHIAAKQNQVEVARSLL-QYGGSANAESVQ-GVTPLHLAAQEGHAEMVALLLS----KQANGNLGNKSGLTPL 282 (437)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTCCCHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCC-CCCHHHHHHHCCCHHHHHHHHh----cCCCCCCCCCCCCCHH
Confidence 446778888888888888887777 456677777765 8888888888888888888888 6777888888888888
Q ss_pred HHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChH
Q 021192 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169 (316)
Q Consensus 90 h~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~ 169 (316)
|+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|+++|++++.+|..|+||||+|+.. +..
T Consensus 283 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~-g~~ 357 (437)
T 1n11_A 283 HLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS----HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ-GHT 357 (437)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHH----HSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCH
T ss_pred HHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHH----HcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHC-ChH
Confidence 8888888888888888888888888888888888888 77888888888888888888888888888666654 456
Q ss_pred HHHHHHHHhHHHH
Q 021192 170 KLRELLLWHSEEQ 182 (316)
Q Consensus 170 ~~~~lL~~~~~~~ 182 (316)
+++++|+++|++.
T Consensus 358 ~iv~~Ll~~ga~~ 370 (437)
T 1n11_A 358 DIVTLLLKNGASP 370 (437)
T ss_dssp HHHHHHHHTTCCS
T ss_pred HHHHHHHHCcCCC
Confidence 6777777776543
No 57
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=2.3e-29 Score=225.08 Aligned_cols=164 Identities=27% Similarity=0.331 Sum_probs=148.8
Q ss_pred CcccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccc
Q 021192 3 KNQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (316)
Q Consensus 3 ~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (316)
.+.+.+. +..|.||||+|+..|+.++++.|+ +.+.+++..+.. |.||||+|+..|+.+++++|++ .+++++.+
T Consensus 234 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~ 307 (437)
T 1n11_A 234 YGGSANAESVQGVTPLHLAAQEGHAEMVALLL-SKQANGNLGNKS-GLTPLHLVAQEGHVPVADVLIK----HGVMVDAT 307 (437)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-TTTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHH----HTCCTTCC
T ss_pred cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH-hcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHh----CCccCCCC
Confidence 3445443 567999999999999999999888 568889999876 9999999999999999999999 78999999
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCcccc
Q 021192 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161 (316)
Q Consensus 82 ~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 161 (316)
|..|+||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+ ..++.+++++|+++|++++.+|.+|.||+++
T Consensus 308 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~----~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~ 383 (437)
T 1n11_A 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAA----QQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383 (437)
T ss_dssp CSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCSCCCCSSSCCHHHH
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHH----HCChHHHHHHHHHCcCCCCCCCCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999 8999999999999999999999999999976
Q ss_pred ccCCCChHHHHHHHHH
Q 021192 162 LSNGPGSAKLRELLLW 177 (316)
Q Consensus 162 ~a~~~~~~~~~~lL~~ 177 (316)
|+. .+...+.++|..
T Consensus 384 A~~-~g~~~~~~~l~~ 398 (437)
T 1n11_A 384 AKR-LGYISVTDVLKV 398 (437)
T ss_dssp HHH-TTCHHHHHHHHH
T ss_pred HHH-cCcHHHHHHHHh
Confidence 665 455677777754
No 58
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.96 E-value=2.6e-29 Score=217.92 Aligned_cols=99 Identities=28% Similarity=0.361 Sum_probs=82.6
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
.+..|.||||+||..|+.+++++|+ +.+.+++.++.. |.||||+|+..|+.+++++|++ .|++++.+|..|+||
T Consensus 54 ~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~-g~t~L~~A~~~g~~~iv~~Ll~----~g~~~~~~~~~g~t~ 127 (351)
T 3utm_A 54 SDGRKSTPLHLAAGYNRVRIVQLLL-QHGADVHAKDKG-GLVPLHNACSYGHYEVTELLLK----HGACVNAMDLWQFTP 127 (351)
T ss_dssp SSTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCC-CCcHHHHHHHCCCHHHHHHHHH----CCCCCCCCCCCCCCH
Confidence 3567889999999999999999888 457888888876 8999999999999999999998 678888888888888
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccc
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEA 113 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~ 113 (316)
||+|+..|+.+++++|+++|++++.
T Consensus 128 L~~A~~~~~~~~v~~Ll~~g~~~~~ 152 (351)
T 3utm_A 128 LHEAASKNRVEVCSLLLSHGADPTL 152 (351)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcc
Confidence 8888888888888888777666553
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=2e-29 Score=196.74 Aligned_cols=140 Identities=19% Similarity=0.197 Sum_probs=127.0
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
.+..|.||||+||..|+.+++++|+. .+.+++.++.. |.||||+|+..|+.+++++|++ .+++++.+|..|+||
T Consensus 32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~ 105 (172)
T 3v30_A 32 PDERGFTPLIWASAFGEIETVRFLLE-WGADPHILAKE-RESALSLASTGGYTDIVGLLLE----RDVDINIYDWNGGTP 105 (172)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTSCCH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCchhhccc-CCCHHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCH
Confidence 46789999999999999999999994 57889999876 9999999999999999999999 789999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCc
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTP 158 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tp 158 (316)
||+|+..++.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|+++|+++..++..|.||
T Consensus 106 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~----~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 106 LLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV----ALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHTCHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH----HhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 99999999999999999999999999999999999999 8899999999999999999999988887
No 60
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.96 E-value=5.4e-29 Score=225.89 Aligned_cols=130 Identities=21% Similarity=0.245 Sum_probs=115.6
Q ss_pred CChhhHHHHHhcCCHHHHHHHHhhCCCcccCC------CCCCCCcHHHHHHh---CCCHHHHHHHHcCCCCCcccccccc
Q 021192 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNER------NPVMAQTPLHVSAG---YNKAEIVKSLLEWPGNDKVELEAQN 82 (316)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~------~~~~g~t~Lh~A~~---~g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (316)
...+.||.|+..|+.+.++.||. .+.++|.+ +.. |.||||+|+. .|+.+++++||+ .|+++|.+|
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~-~g~~~n~~~~~~~~~~~-g~t~Lh~A~~~a~~g~~~~v~~Ll~----~ga~vn~~d 204 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLPGPDAQAP-EELVLHLAVKVANQASLPLVDFIIQ----NGGHLDAKA 204 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHH-TTCCSSSCBCCSSSCCS-CBCHHHHHHHTCCTTTHHHHHHHHH----HSCCTTCCC
T ss_pred ccHHHHHHHHhccCHHHHHHHHh-hcccccCCCCCcccccc-cchHHHHHHHhcccccHHHHHHHHH----cCCCCCccC
Confidence 34578999999999999999994 56888876 555 9999999965 899999999999 889999999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCC
Q 021192 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 151 (316)
Q Consensus 83 ~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~ 151 (316)
..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|+++|++++..
T Consensus 205 ~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~----~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 205 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR----KKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp SSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHH----HTTCHHHHHHHHHTCC-----
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HcCCHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999 899999999999999998863
No 61
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=5.3e-29 Score=209.65 Aligned_cols=168 Identities=26% Similarity=0.257 Sum_probs=128.3
Q ss_pred Cccccc-CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccc
Q 021192 3 KNQDRR-SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (316)
Q Consensus 3 ~~~~~~-~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (316)
.+.+.+ .+..|.||||+|+..|+.++++.|+ +.+.+++.++.. |.||||+|+..|+.+++++|++ .+++++.+
T Consensus 61 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~ 134 (285)
T 1wdy_A 61 HGADPVLRKKNGATPFLLAAIAGSVKLLKLFL-SKGADVNECDFY-GFTAFMEAAVYGKVKALKFLYK----RGANVNLR 134 (285)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCTTCBCTT-CCBHHHHHHHTTCHHHHHHHHH----TTCCTTCC
T ss_pred cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCcc-cCCHHHHHHHhCCHHHHHHHHH----hCCCcccc
Confidence 344544 3567888888888888888888777 467778888766 8888888888888888888888 56666666
Q ss_pred ----------cCCCChHHHHHHHcCCHHHHHHHHhc-CCCccccccCCCcHHHHHhhhhhccCc----HHHHHHHHhcCC
Q 021192 82 ----------NMYGETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLSVWYSIRSED----YATVKTLLEYNA 146 (316)
Q Consensus 82 ----------~~~g~t~Lh~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~a~~~~~~~~~----~~~~~~Ll~~ga 146 (316)
+..|.||||+|+..|+.+++++|++. |++++..|..|.||||+|+ ..++ .+++++|+++|+
T Consensus 135 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~----~~~~~~~~~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL----LSSDDSDVEAITHLLLDHGA 210 (285)
T ss_dssp CCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHH----HCSCTTTHHHHHHHHHHTTC
T ss_pred cccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHH----HccccchHHHHHHHHHHcCC
Confidence 77788888888888888888888876 8888888888888888888 5566 778888888888
Q ss_pred CCCCCCCCCCCccccccCCCChHHHHHHHHH-hHHH
Q 021192 147 DCSAKDNEGKTPLDHLSNGPGSAKLRELLLW-HSEE 181 (316)
Q Consensus 147 ~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~-~~~~ 181 (316)
+++.+|..|+||||+|+..+ ..+++++|++ .+.+
T Consensus 211 ~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~g~~ 245 (285)
T 1wdy_A 211 DVNVRGERGKTPLILAVEKK-HLGLVQRLLEQEHIE 245 (285)
T ss_dssp CSSCCCTTSCCHHHHHHHTT-CHHHHHHHHHSSSCC
T ss_pred CCCCcCCCCCcHHHHHHHcC-CHHHHHHHHhccCCC
Confidence 88888888888886666554 4445555554 5443
No 62
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.96 E-value=1.6e-29 Score=221.44 Aligned_cols=171 Identities=19% Similarity=0.242 Sum_probs=150.5
Q ss_pred CCcccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCc---cc
Q 021192 2 QKNQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK---VE 77 (316)
Q Consensus 2 ~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~---~~ 77 (316)
+.+.+.+. +..|.||||+|+..|+.++|+.|+ +.+++++.++.. |.||||+|+..|+.+++++|++ .+ ++
T Consensus 154 ~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~ga~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~ 227 (373)
T 2fo1_E 154 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLM-KAGADPTIYNKS-ERSALHQAAANRDFGMMVYMLN----STKLKGD 227 (373)
T ss_dssp HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTT-CCCHHHHHHHTTCHHHHHHHTT----SHHHHHT
T ss_pred hcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHH-HCCCCCcccCCC-CCCHHHHHHHCCCHHHHHHHHh----cCccccC
Confidence 34666664 678999999999999999999888 568999999876 9999999999999999999999 55 78
Q ss_pred cccccCCCChHHHHHHHcC---CHHHHHHHHhcCCCccc--------cccCCCcHHHHHhhhhhccCcHHHHHHHHhcC-
Q 021192 78 LEAQNMYGETPLHMAAKNG---CNEAAKLLLAHGAFIEA--------KANNGMTPLHLSVWYSIRSEDYATVKTLLEYN- 145 (316)
Q Consensus 78 ~~~~~~~g~t~Lh~a~~~~---~~~~~~~Ll~~g~~~~~--------~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~g- 145 (316)
++.+|..|+||||+|+..+ +.+++++|++.|++++. .|..|.||||+|+ ..++.+++++|++++
T Consensus 228 ~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~----~~g~~~~v~~Ll~~~~ 303 (373)
T 2fo1_E 228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA----QVSNMPIVKYLVGEKG 303 (373)
T ss_dssp TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHH----SSCCHHHHHHHHHHSC
T ss_pred hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHH----HhCCHHHHHHHHHhcC
Confidence 9999999999999999988 89999999999999886 6778999999999 899999999999875
Q ss_pred CCCCCCCCCCCCccccccCCCChHHHHHHHHHhHHHHH
Q 021192 146 ADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 146 a~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~ 183 (316)
++++.+|..|+||||+|+.. +..+++++|+++|++..
T Consensus 304 ~~~n~~d~~g~TpL~~A~~~-g~~~iv~~Ll~~gad~~ 340 (373)
T 2fo1_E 304 SNKDKQDEDGKTPIMLAAQE-GRIEVVMYLIQQGASVE 340 (373)
T ss_dssp CCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCSS
T ss_pred CCccCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcc
Confidence 99999999999999776664 56677788887776533
No 63
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=1.4e-29 Score=210.93 Aligned_cols=169 Identities=23% Similarity=0.317 Sum_probs=141.4
Q ss_pred CCCChhhHHHHHhcCCHHHHHHHHh---hCCCcccCCC---CCCCCcHHHHHH---hCCCHHHHHHHHcCCCCC------
Q 021192 10 RSAKPATIHGCAQSGDLLAFQRLLR---ENPSLLNERN---PVMAQTPLHVSA---GYNKAEIVKSLLEWPGND------ 74 (316)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~---~~~~~~~~~~---~~~g~t~Lh~A~---~~g~~~~v~~Ll~~~~~~------ 74 (316)
+..+.++||.||..|+.+.++.|+. +.+.+++..+ +..|.||||+|+ ..|+.+++++|++.+++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 3468999999999999998776665 4677777554 133999999999 779999999999942211
Q ss_pred -ccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccc--------------cCCCcHHHHHhhhhhccCcHHHHH
Q 021192 75 -KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA--------------NNGMTPLHLSVWYSIRSEDYATVK 139 (316)
Q Consensus 75 -~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~--------------~~g~t~L~~a~~~~~~~~~~~~~~ 139 (316)
..+++.+|..|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+ ..++.++++
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~----~~g~~~~v~ 157 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA----CTNQPHIVH 157 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHH----HTTCHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHH----HcCCHHHHH
Confidence 12345556689999999999999999999999999999998 68999999999 899999999
Q ss_pred HHHh---cCCCCCCCCCCCCCccccccCCCCh--------HHHHHHHHHhHHHH
Q 021192 140 TLLE---YNADCSAKDNEGKTPLDHLSNGPGS--------AKLRELLLWHSEEQ 182 (316)
Q Consensus 140 ~Ll~---~ga~~~~~~~~g~tpl~~~a~~~~~--------~~~~~lL~~~~~~~ 182 (316)
+|++ +|++++.+|..|+||||+|+..+.. ..++++|+++|++.
T Consensus 158 ~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~ 211 (260)
T 3jxi_A 158 YLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL 211 (260)
T ss_dssp HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence 9999 9999999999999999888854442 47888888888775
No 64
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.96 E-value=1.3e-29 Score=222.04 Aligned_cols=170 Identities=18% Similarity=0.229 Sum_probs=147.7
Q ss_pred CCcccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCC--CcccCCCCCCCCcHHHHHHhCC---CHHHHHHHHcCCCCCc
Q 021192 2 QKNQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENP--SLLNERNPVMAQTPLHVSAGYN---KAEIVKSLLEWPGNDK 75 (316)
Q Consensus 2 ~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~--~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~ 75 (316)
+.+.+.+. +..|.||||+|+..|+.++++.|+.... .+++..+.. |.||||+|+..+ +.+++++|++ .|
T Consensus 187 ~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~-g~t~L~~A~~~~~~~~~~~v~~Ll~----~g 261 (373)
T 2fo1_E 187 KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN-GMTALMIVAHNEGRDQVASAKLLVE----KG 261 (373)
T ss_dssp HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTT-SCCHHHHHHHSCSTTHHHHHHHHHH----HT
T ss_pred HCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCC-CCCHHHHHHHhCCcchHHHHHHHHH----CC
Confidence 34566554 6789999999999999999999985432 688888876 999999999998 8999999999 66
Q ss_pred ccccc--------ccCCCChHHHHHHHcCCHHHHHHHHhcC-CCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCC
Q 021192 76 VELEA--------QNMYGETPLHMAAKNGCNEAAKLLLAHG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 146 (316)
Q Consensus 76 ~~~~~--------~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga 146 (316)
++++. +|..|+||||+|+..|+.+++++|++.+ ++++.+|..|.||||+|+ ..|+.+++++|+++|+
T Consensus 262 ~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~----~~g~~~iv~~Ll~~ga 337 (373)
T 2fo1_E 262 AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA----QEGRIEVVMYLIQQGA 337 (373)
T ss_dssp CCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHH----HHTCHHHHHHHHHTTC
T ss_pred CCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHH----HcCCHHHHHHHHHcCC
Confidence 66665 6779999999999999999999999886 999999999999999999 8899999999999999
Q ss_pred CCCCCCCCCCCccccccCCCChHHHHHHHHHhHHH
Q 021192 147 DCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181 (316)
Q Consensus 147 ~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~ 181 (316)
+++.+|..|+||||+|+. .++.+++++|.+++++
T Consensus 338 d~~~~d~~g~t~l~~A~~-~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 338 SVEAVDATDHTARQLAQA-NNHHNIVDIFDRCRPE 371 (373)
T ss_dssp CSSCCCSSSCCHHHHHHH-TTCHHHHHHHHTTC--
T ss_pred CccCCCCCCCCHHHHHHH-cCCHHHHHHHHhcCcc
Confidence 999999999999976665 5667888888876643
No 65
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=2.5e-29 Score=206.81 Aligned_cols=157 Identities=20% Similarity=0.158 Sum_probs=131.6
Q ss_pred CCCcccccCCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccccc
Q 021192 1 MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (316)
Q Consensus 1 ~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 80 (316)
+++|.+.+.++.+.|+||.|+..|+.++++.|+ +.+.+++.++.. |.||||+|+..|+.+++++|++ .|++++.
T Consensus 25 l~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~ 98 (239)
T 1ycs_B 25 IAHGMRVKFNPLPLALLLDSSLEGEFDLVQRII-YEVDDPSLPNDE-GITALHNAVCAGHTEIVKFLVQ----FGVNVNA 98 (239)
T ss_dssp ------------CHHHHHHHHHHTCHHHHHHHT-STTSSCCCCCTT-SCCHHHHHHHHTCHHHHHHHHH----HTCCTTC
T ss_pred hccCCCcccCchhhHHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCc
Confidence 356777787888999999999999999999888 567799999977 9999999999999999999999 7899999
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCC-cHHHHH--hhhhhccCcHHHHHHHHhcCCCCCCC------
Q 021192 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGM-TPLHLS--VWYSIRSEDYATVKTLLEYNADCSAK------ 151 (316)
Q Consensus 81 ~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~a--~~~~~~~~~~~~~~~Ll~~ga~~~~~------ 151 (316)
+|..|+||||+|+..|+.+++++|+++|++++..+..|. ||||+| + ..++.+++++|+++|++++..
T Consensus 99 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~----~~g~~~~~~~Ll~~~a~~~~~~~~~~~ 174 (239)
T 1ycs_B 99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEM----EEGYTQCSQFLYGVQEKMGIMNKGVIY 174 (239)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSS----STTCCCHHHHHHHHHHHTTTTGGGEEE
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHh----hhccHHHHHHHHHhhhcccccccceEE
Confidence 999999999999999999999999999999999998887 999999 6 789999999999999998887
Q ss_pred ---CCCCCCccccccCCCC
Q 021192 152 ---DNEGKTPLDHLSNGPG 167 (316)
Q Consensus 152 ---~~~g~tpl~~~a~~~~ 167 (316)
+..+.+|++.+...+.
T Consensus 175 al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 175 ALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp ESSCBCCSSTTBCCBCSSC
T ss_pred EEeccCCCCCCcccccCCC
Confidence 4456777765555443
No 66
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.96 E-value=8.4e-29 Score=214.73 Aligned_cols=132 Identities=31% Similarity=0.395 Sum_probs=113.1
Q ss_pred CCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHH
Q 021192 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (316)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh 90 (316)
..+.++||.||..|+.+.++.++...+.+++.++.. |.||||+|+..|+.+++++|++ .|++++.+|..|+||||
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~ 96 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGR-KSTPLHLAAGYNRVRIVQLLLQ----HGADVHAKDKGGLVPLH 96 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHH
T ss_pred cccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCcHHH
Confidence 456788999999999998888888778888888876 8899999999999999999998 77888888888999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCC
Q 021192 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 151 (316)
Q Consensus 91 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~ 151 (316)
+|+..|+.+++++|+++|++++..|..|.||||+|+ ..++.+++++|+++|++++..
T Consensus 97 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~ 153 (351)
T 3utm_A 97 NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAA----SKNRVEVCSLLLSHGADPTLV 153 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCccc
Confidence 999999999999999999999888888999999988 777888888888877776653
No 67
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.96 E-value=1.6e-29 Score=189.61 Aligned_cols=134 Identities=23% Similarity=0.286 Sum_probs=123.2
Q ss_pred CCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccc
Q 021192 36 NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA 115 (316)
Q Consensus 36 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~ 115 (316)
++.+++..+.. |.||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+. ++.+++++|+++|++++.+|
T Consensus 1 G~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~ 74 (136)
T 1d9s_A 1 GSPGIHMLGGS-SDAGLATAAARGQVETVRQLLE----AGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCAD 74 (136)
T ss_dssp CCCCCSCCCCC-CSCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCB
T ss_pred CCCCccCCCCC-CccHHHHHHHcCCHHHHHHHHH----cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcC
Confidence 35678888876 9999999999999999999999 788999999999999999999 99999999999999999999
Q ss_pred cC-CCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhHH
Q 021192 116 NN-GMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180 (316)
Q Consensus 116 ~~-g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~ 180 (316)
.. |.||||+|+ ..++.+++++|+++|++++.+|..|+||||+|+.. +..+++++|.++|+
T Consensus 75 ~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~-~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 75 PATLTRPVHDAA----REGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ-GHRDIARYLHAATG 135 (136)
T ss_dssp TTTTBCHHHHHH----HHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHH-TCHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCC
Confidence 99 999999999 88999999999999999999999999999777664 56777888877664
No 68
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=2.9e-28 Score=205.19 Aligned_cols=161 Identities=24% Similarity=0.269 Sum_probs=99.4
Q ss_pred CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHH
Q 021192 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (316)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L 89 (316)
+..|.||||+|+..|+.+++++|+ +.+.+++.++.. |.||||+|+..|+.+++++|++ .|++++.+|..|+|||
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L 109 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLL-RHGADPVLRKKN-GATPFLLAAIAGSVKLLKLFLS----KGADVNECDFYGFTAF 109 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHH----TTCCTTCBCTTCCBHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCcccCCHH
Confidence 344566666666666666666665 345566666554 6666666666666666666666 5566666666666666
Q ss_pred HHHHHcCCHHHHHHHHhcCCCcccc----------ccCCCcHHHHHhhhhhccCcHHHHHHHHhc-CCCCCCCCCCCCCc
Q 021192 90 HMAAKNGCNEAAKLLLAHGAFIEAK----------ANNGMTPLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTP 158 (316)
Q Consensus 90 h~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~-ga~~~~~~~~g~tp 158 (316)
|+|+..|+.+++++|++.|++++.. +..|.||||+|+ ..++.+++++|++. |++++.+|..|+||
T Consensus 110 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~ 185 (285)
T 1wdy_A 110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA----EKGHVEVLKILLDEMGADVNACDNMGRNA 185 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH----HHTCHHHHHHHHHTSCCCTTCCCTTSCCH
T ss_pred HHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHH----HcCCHHHHHHHHHhcCCCCCccCCCCCCH
Confidence 6666666666666666666666655 555666666666 55666666666655 66666666666666
Q ss_pred cccccCCCCh---HHHHHHHHHhHH
Q 021192 159 LDHLSNGPGS---AKLRELLLWHSE 180 (316)
Q Consensus 159 l~~~a~~~~~---~~~~~lL~~~~~ 180 (316)
||+++..+.. ..++++|.+++.
T Consensus 186 l~~a~~~~~~~~~~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 186 LIHALLSSDDSDVEAITHLLLDHGA 210 (285)
T ss_dssp HHHHHHCSCTTTHHHHHHHHHHTTC
T ss_pred HHHHHHccccchHHHHHHHHHHcCC
Confidence 6555544332 445555555543
No 69
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.96 E-value=5.9e-29 Score=215.02 Aligned_cols=159 Identities=19% Similarity=0.207 Sum_probs=141.4
Q ss_pred CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCC----HHHHHHHHcCCCCCccccccccCCC
Q 021192 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK----AEIVKSLLEWPGNDKVELEAQNMYG 85 (316)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~~~g 85 (316)
+..|.||||+||..|+.++|+.||.+.+.++|.++.. |.||||+++..++ .+++++|++ .|++++.+|..|
T Consensus 165 ~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~-g~t~l~~~~~~~~~~~~~~i~~lLl~----~gad~n~~d~~g 239 (337)
T 4g8k_A 165 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM-GRNALIHALLSSDDSDVEAITHLLLD----HGADVNVRGERG 239 (337)
T ss_dssp TTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTT-SCCHHHHHHHHSCTTTHHHHHHHHHH----TTCCTTCCCGGG
T ss_pred cCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCC-CCcHHHHHHHHcCcccHHHHHHHHHH----CCCCCCCcCCCC
Confidence 5568999999999999999999998889999999987 9999998875543 468899999 889999999999
Q ss_pred ChHHHHHHHcCCHHHHHHHHhc-CCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccC
Q 021192 86 ETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (316)
Q Consensus 86 ~t~Lh~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~ 164 (316)
+||||+|+..|+.+++++|+.. |+++|.+|.+|+||||+|+ ..|+.++|++|+++|||++.+ +|||+|+.
T Consensus 240 ~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~----~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~ 310 (337)
T 4g8k_A 240 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV----ELKLKKIAELLCKRGASTDCG-----DLVMTARR 310 (337)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHH----HTTCHHHHHHHHTTSCSSTTC-----CHHHHHHH
T ss_pred CCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCC-----CHHHHHHH
Confidence 9999999999999999999985 8999999999999999999 899999999999999999864 59966555
Q ss_pred CCChHHHHHHHHHhHHHHH
Q 021192 165 GPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 165 ~~~~~~~~~lL~~~~~~~~ 183 (316)
.+..+++++|+++|++..
T Consensus 311 -~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 311 -NYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp -TTCHHHHHHHHHTTCCC-
T ss_pred -cCCHHHHHHHHHCcCCCC
Confidence 566788899999887644
No 70
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.96 E-value=1.7e-28 Score=184.00 Aligned_cols=127 Identities=28% Similarity=0.364 Sum_probs=114.8
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
....+.|+||+||..|+.++++.|+. .+.+++.++.. |.||||+|+..|+.+++++|++ .+++++.+|..|+||
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~t~ 83 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMA-NGADVNAKDEY-GLTPLYLATAHGHLEIVEVLLK----NGADVNAVDAIGFTP 83 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHH-cCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCH
Confidence 45668999999999999999998885 57888998876 9999999999999999999999 788999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcC
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN 145 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~g 145 (316)
||+|+..++.+++++|+++|++++..|..|.||||+|+ ..++.+++++|+++|
T Consensus 84 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~----~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 84 LHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI----GNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHH----HCCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999 889999999999876
No 71
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=3.5e-28 Score=187.75 Aligned_cols=135 Identities=20% Similarity=0.237 Sum_probs=123.3
Q ss_pred CCcccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccccc
Q 021192 2 QKNQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (316)
Q Consensus 2 ~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 80 (316)
+.+.+.+. +..|.||||+|+. |+.++++.|+. .+.+++.++.. |.||||+|+..|+.+++++|++ .+++++.
T Consensus 26 ~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~ 98 (162)
T 1ihb_A 26 QNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLKDRT-GFAVIHDAARAGFLDTLQTLLE----FQADVNI 98 (162)
T ss_dssp TSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTC
T ss_pred hCCCCccccCccCccHHHHHHc-CcHHHHHHHHH-cCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCC
Confidence 45556554 6789999999999 99999999885 68899999876 9999999999999999999999 7899999
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHhcCCC-ccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCC
Q 021192 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147 (316)
Q Consensus 81 ~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~ 147 (316)
+|..|+||||+|+..|+.+++++|++.|++ ++..|..|.||||+|+ ..++.+++++|+++|||
T Consensus 99 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~----~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR----LYGRNEVVSLMQANGAG 162 (162)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTC--
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHH----HcCCHHHHHHHHHhCCC
Confidence 999999999999999999999999999998 6999999999999999 88999999999999986
No 72
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=199.73 Aligned_cols=171 Identities=20% Similarity=0.268 Sum_probs=133.5
Q ss_pred Cccccc-CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccc
Q 021192 3 KNQDRR-SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (316)
Q Consensus 3 ~~~~~~-~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (316)
.+.+.+ .+..|.||||+|+..|+.+++++|+.. +.+++......|.||||+|+..|+.+++++|++ .+++++.+
T Consensus 31 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~ 105 (240)
T 3eu9_A 31 AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK----YGADPSLI 105 (240)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHH----TTCCTTCC
T ss_pred cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCChhHHHHHcCCHHHHHHHHH----cCCCCccc
Confidence 444554 356788999999999999999988854 455554443448899999999999999999998 77888888
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCc-HHHHHHHHhcCCCCCCCCC-CCCCcc
Q 021192 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSED-YATVKTLLEYNADCSAKDN-EGKTPL 159 (316)
Q Consensus 82 ~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~-~~~~~~Ll~~ga~~~~~~~-~g~tpl 159 (316)
|..|+||||+|+..|+.+++++|++.|++++..|..|.||||+|+ ..++ .+++++|++.|++++..+. .|.|||
T Consensus 106 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~----~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L 181 (240)
T 3eu9_A 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAA----YRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL 181 (240)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHCCSSTTHHHHHHTTCCTTCCCTTTCCCHH
T ss_pred CCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHH----HhCChHHHHHHHHhcCCCcchhhccCCCcHH
Confidence 888999999999999999999999999988888888888888888 3344 6788888888888888876 788888
Q ss_pred ccccCCCChHHHHHHHHHhHHHHH
Q 021192 160 DHLSNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 160 ~~~a~~~~~~~~~~lL~~~~~~~~ 183 (316)
|+|+.. +..+++++|.+++.+..
T Consensus 182 ~~A~~~-~~~~~v~~Ll~~g~~~~ 204 (240)
T 3eu9_A 182 HWAVLA-GNTTVISLLLEAGANVD 204 (240)
T ss_dssp HHHHHH-TCHHHHHHHHHHTCCTT
T ss_pred HHHHHc-CCHHHHHHHHHcCCCCC
Confidence 665554 45566677776665543
No 73
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.96 E-value=4.1e-28 Score=199.14 Aligned_cols=164 Identities=21% Similarity=0.193 Sum_probs=148.7
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccccccc-CCCCh
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGET 87 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~t 87 (316)
.++.+.|+|+.|+..|+.+++++|+. .+.+++.++.. |.||||+|+..|+.+++++|++ .+.+++..+ ..|+|
T Consensus 5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~t 78 (240)
T 3eu9_A 5 IDDYSTWDIVKATQYGIYERCRELVE-AGYDVRQPDKE-NVTLLHWAAINNRIDLVKYYIS----KGAIVDQLGGDLNST 78 (240)
T ss_dssp CSCGGGCCHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCBTTTTBC
T ss_pred cccccchHHHHHHHcCChHHHHHHHH-cCCCcCCCCCC-CCCHHHHHHHhCCHHHHHHHHH----cCCcchhhcCCcCCC
Confidence 36678999999999999999999995 67889998876 9999999999999999999999 666666554 55999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCC
Q 021192 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (316)
Q Consensus 88 ~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~ 167 (316)
|||+|+..|+.+++++|++.|++++..|..|.||||+|+ ..++.+++++|+++|++++.++..|.||||+++..++
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~----~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~ 154 (240)
T 3eu9_A 79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA----QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred hhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH----HcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC
Confidence 999999999999999999999999999999999999999 8899999999999999999999999999988887777
Q ss_pred hHHHHHHHHHhHHHH
Q 021192 168 SAKLRELLLWHSEEQ 182 (316)
Q Consensus 168 ~~~~~~lL~~~~~~~ 182 (316)
...+.++|...+.+.
T Consensus 155 ~~~~~~~L~~~~~~~ 169 (240)
T 3eu9_A 155 SVDPTRLLLTFNVSV 169 (240)
T ss_dssp SSTTHHHHHHTTCCT
T ss_pred hHHHHHHHHhcCCCc
Confidence 788888888776543
No 74
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.95 E-value=5.5e-28 Score=178.40 Aligned_cols=126 Identities=40% Similarity=0.562 Sum_probs=117.0
Q ss_pred CChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHH
Q 021192 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (316)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~ 91 (316)
+|.||||.|+..|+.+++++|+. .+.+++..+.. |.||||+|+..|+.+++++|++ .+++++.+|..|+||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~l~~ 74 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHL 74 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCC-CCcHHHHHHHcCcHHHHHHHHH----cCCCCcccCCCCCcHHHH
Confidence 47899999999999999999985 47788888876 9999999999999999999999 788899999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCC
Q 021192 92 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147 (316)
Q Consensus 92 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~ 147 (316)
|+..++.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|+++|+|
T Consensus 75 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~----~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 75 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA----RNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHHTCC
T ss_pred HHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHH----HcCcHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999 88999999999999986
No 75
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.95 E-value=2.9e-28 Score=210.66 Aligned_cols=175 Identities=25% Similarity=0.251 Sum_probs=147.4
Q ss_pred cccc-CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCC---------CCCCcHHHHHHhCCCHHHHHHHHcCCCCC
Q 021192 5 QDRR-SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNP---------VMAQTPLHVSAGYNKAEIVKSLLEWPGND 74 (316)
Q Consensus 5 ~~~~-~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~---------~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~ 74 (316)
.+.+ .+..|.||||+|+..|+.++++.|+ +.+++++.... ..|.||||+|+..|+.++|++||++ .
T Consensus 116 ~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll-~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~---~ 191 (337)
T 4g8k_A 116 ADVNECDFYGFTAFMEAAVYGKVKALKFLY-KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE---M 191 (337)
T ss_dssp CCTTCBCTTCCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHH---S
T ss_pred chhhhhccCCCCHHHHHHHcCcHHHHHHHH-HcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhc---c
Confidence 3444 3678999999999999999999888 45666654321 2389999999999999999999963 6
Q ss_pred ccccccccCCCChHHHHHHHcCC----HHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhc-CCCCC
Q 021192 75 KVELEAQNMYGETPLHMAAKNGC----NEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-NADCS 149 (316)
Q Consensus 75 ~~~~~~~~~~g~t~Lh~a~~~~~----~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~-ga~~~ 149 (316)
|++++.+|..|+||||+++..+. ..++++|+++|+++|.+|..|+||||+|+ ..++.++++.|++. |++++
T Consensus 192 gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~----~~~~~~~v~~Ll~~~~~~vn 267 (337)
T 4g8k_A 192 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV----EKKHLGLVQRLLEQEHIEIN 267 (337)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH----HTTCHHHHHHHHTSTTCCTT
T ss_pred CCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH----HhhhhHHHHHHHHhcCCccc
Confidence 89999999999999998876544 46889999999999999999999999999 89999999999975 89999
Q ss_pred CCCCCCCCccccccCCCChHHHHHHHHHhHHHHHHHhhH
Q 021192 150 AKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRAL 188 (316)
Q Consensus 150 ~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~~ 188 (316)
.+|..|+||||+|+. .++.+++++|+++|++...++++
T Consensus 268 ~~d~~G~TpL~~A~~-~g~~~iv~~Ll~~GAd~n~~~~L 305 (337)
T 4g8k_A 268 DTDSDGKTALLLAVE-LKLKKIAELLCKRGASTDCGDLV 305 (337)
T ss_dssp CBCTTSCBHHHHHHH-TTCHHHHHHHHTTSCSSTTCCHH
T ss_pred CcCCCCCCHHHHHHH-cCCHHHHHHHHHCCCCCCCCCHH
Confidence 999999999977665 45678888998888766554433
No 76
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=8.7e-28 Score=183.81 Aligned_cols=129 Identities=25% Similarity=0.330 Sum_probs=120.9
Q ss_pred CcccccCCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccccccc
Q 021192 3 KNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN 82 (316)
Q Consensus 3 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (316)
.+.+.+.+..|.||||+|+..|+.++++.|+ +.+.+++.++.. |.||||+|+..|+.+++++|++ .|++++.+|
T Consensus 24 ~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~ 97 (153)
T 1awc_B 24 NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKV-DRTPLHMAASEGHANIVEVLLK----HGADVNAKD 97 (153)
T ss_dssp HTCCCCCCTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHT----TTCCTTCCC
T ss_pred cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCC-CCCHHHHHHHcChHHHHHHHHH----cCCCCCCCC
Confidence 4555667788999999999999999999888 578899999876 9999999999999999999999 789999999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHH
Q 021192 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 141 (316)
Q Consensus 83 ~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~L 141 (316)
..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|
T Consensus 98 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~----~~~~~~i~~~L 152 (153)
T 1awc_B 98 MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISI----DNGNEDLAEIL 152 (153)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH----HcCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999 89999999987
No 77
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=5.4e-28 Score=189.93 Aligned_cols=137 Identities=22% Similarity=0.269 Sum_probs=128.8
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
.+..|.||||+||..|+.++++.|+ +.+.+++.++.. |.||||+|+..|+.+++++|++ .|++++.+|..|+||
T Consensus 35 ~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~t~ 108 (179)
T 3f6q_A 35 GDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRG-DDTPLHLAASHGHRDIVQKLLQ----YKADINAVNEHGNVP 108 (179)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCH
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCCH
Confidence 4678999999999999999999888 568999999876 9999999999999999999999 789999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCC
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG 155 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g 155 (316)
||+|+..++.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|+++|++++..+..+
T Consensus 109 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~----~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 109 LHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK----APLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSC----HHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred HHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHH----HHHHHHHHHHHHHhhcCcccCCccc
Confidence 99999999999999999999999999999999999999 8889999999999999999876654
No 78
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=1.6e-27 Score=185.44 Aligned_cols=133 Identities=29% Similarity=0.409 Sum_probs=123.0
Q ss_pred CcccccC-CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccc
Q 021192 3 KNQDRRS-RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (316)
Q Consensus 3 ~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (316)
.+.+.+. +..|.||||+||..|+.+++++|+ +.+.+++..+.. |.||||+|+..|+.+++++|++ .+++++.+
T Consensus 36 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~ 109 (169)
T 2y1l_E 36 NGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-KNGADVNAVDHA-GMTPLRLAALFGHLEIVEVLLK----NGADVNAN 109 (169)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCCC
Confidence 4555553 678999999999999999999998 468899999876 9999999999999999999999 78999999
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcC
Q 021192 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN 145 (316)
Q Consensus 82 ~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~g 145 (316)
|..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|++.|
T Consensus 110 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~----~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 110 DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI----DNGNEDLAEILQKLN 169 (169)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HhCCHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999 899999999999876
No 79
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.95 E-value=6.4e-28 Score=181.06 Aligned_cols=126 Identities=27% Similarity=0.313 Sum_probs=103.4
Q ss_pred CCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcH
Q 021192 42 ERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTP 121 (316)
Q Consensus 42 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 121 (316)
.++.. |.||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..++.+++++|++.|++++.+|..|.||
T Consensus 5 ~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 79 (137)
T 3c5r_A 5 FTNHR-GETLLHIASIKGDIPSVEYLLQ----NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79 (137)
T ss_dssp CCCTT-CCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred CcCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence 44444 8899999999999999999998 678888888889999999999999999999999999998888889999
Q ss_pred HHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHH
Q 021192 122 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW 177 (316)
Q Consensus 122 L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~ 177 (316)
||+|+ ..++.+++++|+++|++++.+|..|.||+|+|+ ..+...+..+|..
T Consensus 80 L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~-~~~~~~~l~~l~~ 130 (137)
T 3c5r_A 80 LHDAA----KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD-DESMKSLLLLPEK 130 (137)
T ss_dssp HHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCC-CHHHHHHHSCC--
T ss_pred HHHHH----HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh-hccHHHHHhhccc
Confidence 99998 788889999999999999999999999996554 3445555555543
No 80
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.95 E-value=2.8e-28 Score=182.98 Aligned_cols=133 Identities=26% Similarity=0.303 Sum_probs=117.8
Q ss_pred cccccCCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccC
Q 021192 4 NQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM 83 (316)
Q Consensus 4 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 83 (316)
|.|+..+..|.||||+||..|+.+++++|+ +.+.+++.++.. |.||||+|+..|+.+++++|++ .+++++.+|.
T Consensus 1 G~d~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~ 74 (137)
T 3c5r_A 1 GIDPFTNHRGETLLHIASIKGDIPSVEYLL-QNGSDPNVKDHA-GWTPLHEACNHGHLKVVELLLQ----HKALVNTTGY 74 (137)
T ss_dssp ---CCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCG
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCcccCcCC
Confidence 456777889999999999999999999988 468899999876 9999999999999999999999 7889999999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCC
Q 021192 84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 146 (316)
Q Consensus 84 ~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga 146 (316)
.|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+ ..+..+++++|.+.+.
T Consensus 75 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~----~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 75 QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD----DESMKSLLLLPEKNES 133 (137)
T ss_dssp GGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCC----CHHHHHHHSCC-----
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh----hccHHHHHhhcccccc
Confidence 9999999999999999999999999999999999999999999 7778888877766543
No 81
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=2.3e-27 Score=183.74 Aligned_cols=127 Identities=27% Similarity=0.344 Sum_probs=118.0
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
.+..|.||||+|+..|+.+++++|+ +.+.+++.++.. |.||||+|+..|+.+++++|++ .+++++.+|..|+||
T Consensus 38 ~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~ 111 (165)
T 3twr_A 38 IEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKG-GLVPLHNACSYGHYEVAELLVK----HGAVVNVADLWKFTP 111 (165)
T ss_dssp TTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCH
T ss_pred cccCCCCHHHHHHHcChHHHHHHHH-hcCCCCCccCCC-CCCHHHHHHHcCcHHHHHHHHh----CCCCCCCcCCCCCCH
Confidence 3567889999999999999999888 568899999986 9999999999999999999999 789999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCC
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 146 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga 146 (316)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+ . ++.+++++|+++|+
T Consensus 112 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~----~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 112 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK----D-GDTDIQDLLRGDAA 164 (165)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSC----T-TCHHHHHHHHTC--
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHh----c-CChHHHHHHhhccc
Confidence 99999999999999999999999999999999999987 5 89999999999886
No 82
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=2.7e-27 Score=183.74 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=124.9
Q ss_pred ccccc-CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccccccc
Q 021192 4 NQDRR-SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN 82 (316)
Q Consensus 4 ~~~~~-~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (316)
+.+.+ .+..|.||||+|+..|+.+++++|+. .+.+++..+.. |.||||+|+..|+.+++++|++ .+++++.+|
T Consensus 26 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~ 99 (167)
T 3v31_A 26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKG-RESALSLACSKGYTDIVKMLLD----CGVDVNEYD 99 (167)
T ss_dssp SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCC
T ss_pred CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCcCCC-CCcHHHHHHHcCCHHHHHHHHH----CCCCCCcCC
Confidence 33444 46789999999999999999999985 58899999876 9999999999999999999999 789999999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCC
Q 021192 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS 149 (316)
Q Consensus 83 ~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~ 149 (316)
..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|++++++..
T Consensus 100 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~----~~~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 100 WNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV----ALGYRSVQQVIESHLLKLL 162 (167)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHTCHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HcCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 8899999999999876644
No 83
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=2.1e-27 Score=178.04 Aligned_cols=123 Identities=31% Similarity=0.417 Sum_probs=113.8
Q ss_pred CCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhh
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~ 127 (316)
+.||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..++.+++++|++.|++++..|..|.||||+|+
T Consensus 14 ~~t~l~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~- 88 (136)
T 2jab_A 14 LGKKLLEAARAGQDDEVRILMA----NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA- 88 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH-
T ss_pred ccHHHHHHHHhCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH-
Confidence 8899999999999999999999 78899999999999999999999999999999999999999999999999999
Q ss_pred hhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhH
Q 021192 128 YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 179 (316)
Q Consensus 128 ~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~ 179 (316)
..++.+++++|+++|++++.+|..|+||||+|+.. +..+++++|.++|
T Consensus 89 ---~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~-~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 ---FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN-GNEDLAEILQKLN 136 (136)
T ss_dssp ---HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHC-
T ss_pred ---HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHC-CCHHHHHHHHHcC
Confidence 88999999999999999999999999999777664 5567777776543
No 84
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=4.8e-27 Score=186.59 Aligned_cols=132 Identities=26% Similarity=0.262 Sum_probs=121.9
Q ss_pred ccccc-CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccccccc
Q 021192 4 NQDRR-SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN 82 (316)
Q Consensus 4 ~~~~~-~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (316)
+.+.+ .+..|.||||+|+..|+.++++.|+. .+.+++.++.. |.||||+|+..|+.+++++|++ .+++++.+|
T Consensus 58 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~ 131 (192)
T 2rfm_A 58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTKDFS-GKTPLMWSIIFGYSEMSYFLLE----HGANVNDRN 131 (192)
T ss_dssp HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCSSCCC
T ss_pred ccccccccccCccHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHH----CCCCCCCCC
Confidence 33444 35679999999999999999999985 57889999876 9999999999999999999999 789999999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcC
Q 021192 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN 145 (316)
Q Consensus 83 ~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~g 145 (316)
..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|+++|
T Consensus 132 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~----~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 132 LEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASAR----IFGRQEVIKIFTEVR 190 (192)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH----HTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH----HhCcHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999 899999999999864
No 85
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.94 E-value=1.5e-27 Score=194.04 Aligned_cols=137 Identities=23% Similarity=0.274 Sum_probs=99.2
Q ss_pred CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHH
Q 021192 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (316)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L 89 (316)
+..|.||||+||..|+.++++.|+. .+.+++.++.. |.||||+|+..|+.+++++|+++ .+++++.+|..|+|||
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~d~~g~tpL 144 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLDKA-GSTALYWACHGGHKDIVEMLFTQ---PNIELNQQNKLGDTAL 144 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHTTS---TTCCCCCCCTTSCCHH
T ss_pred ccccccccccccccCcHHHHHHHHh-CCCCccccCCC-CCCHHHHHHHcCCHHHHHHHHcC---CCCCccccCCCCCCHH
Confidence 3456788888888888888888774 66778887765 88888888888888888888882 3788888888888888
Q ss_pred HHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCC
Q 021192 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG 155 (316)
Q Consensus 90 h~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g 155 (316)
|+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..++.++++.|++.|++.+.++..+
T Consensus 145 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~----~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 145 HAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT----NAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCC----SHHHHHHHC----------------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhc----chhHHHHHHHHhccchhhhccchhh
Confidence 8888888888888888888888888888888888888 7778888888888888877766654
No 86
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.94 E-value=5.4e-27 Score=199.01 Aligned_cols=139 Identities=20% Similarity=0.222 Sum_probs=122.4
Q ss_pred CChhhHHHHHhcCCHHHHHHHHhhCCCcccC------CCCCCCCcHHHHHHhC---CCHHHHHHHHcCCCCCcccccccc
Q 021192 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNE------RNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQN 82 (316)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~------~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (316)
...++|+.|+..|+.+.++.|+ ..+.+++. .+.. |.||||+|+.. |+.+++++|++ .|++++.+|
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll-~~g~d~~~~~~~~~~~~~-g~t~Lh~A~~~~~~~~~~iv~~Ll~----~gadvn~~d 223 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAF-ANGQDFGQPLPGPDAQAP-EELVLHLAVKVANQASLPLVDFIIQ----NGGHLDAKA 223 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHH-HTTCCTTSCEECSSSCSC-EECHHHHHHHTCCTTTHHHHHHHHH----HSSCTTCCC
T ss_pred chHHHHhhhhhccCHHHHHHHH-hcCCcccccCCCcccCCC-CccHHHHHHHhcccCcHHHHHHHHh----cCCCCCCCC
Confidence 3567899999999999999998 56788877 4554 99999999987 89999999999 789999999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 021192 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL 162 (316)
Q Consensus 83 ~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~ 162 (316)
..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|+++|++ .|.||||+|
T Consensus 224 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~----~~~~~~iv~~Ll~~ga~------~g~tpLh~A 293 (301)
T 2b0o_E 224 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR----KKHHKECEELLEQAQAG------TFAFPLHVD 293 (301)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHH----HHTCHHHHHHHHHHHHH------TTSSCCC--
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HcCCHHHHHHHHHhcCC------CCCChhHHH
Confidence 99999999999999999999999999999999999999999999 88999999999999987 478999887
Q ss_pred cCCC
Q 021192 163 SNGP 166 (316)
Q Consensus 163 a~~~ 166 (316)
+..+
T Consensus 294 ~~~g 297 (301)
T 2b0o_E 294 YSWV 297 (301)
T ss_dssp ----
T ss_pred HhcC
Confidence 7654
No 87
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.94 E-value=1.1e-26 Score=171.01 Aligned_cols=106 Identities=27% Similarity=0.316 Sum_probs=52.3
Q ss_pred CCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhh
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~ 127 (316)
|.||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+
T Consensus 7 ~~~~l~~A~~~~~~~~v~~ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~- 81 (123)
T 3aaa_C 7 CDKEFMWALKNGDLDEVKDYVA----KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV- 81 (123)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHH----TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH-
T ss_pred cchHHHHHHHcCCHHHHHHHHH----cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH-
Confidence 4445555555555555555544 34444444444555555555555555555555555555544445555555554
Q ss_pred hhhccCcHHHHHHHHhcCCCCCCCCCCCCCcccc
Q 021192 128 YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161 (316)
Q Consensus 128 ~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 161 (316)
..++.+++++|+++|++++.+|..|+||+|+
T Consensus 82 ---~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~ 112 (123)
T 3aaa_C 82 ---YEGHVSCVKLLLSKGADKTVKGPDGLTAFEA 112 (123)
T ss_dssp ---HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred ---HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 4444455555555555555555555555533
No 88
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.94 E-value=1.3e-26 Score=170.62 Aligned_cols=111 Identities=25% Similarity=0.279 Sum_probs=103.8
Q ss_pred CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHH
Q 021192 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (316)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L 89 (316)
++.|.|+||+|+..|+.++++.|+. .+.+++.++.. |.||||+|+..|+.+++++|++ .+++++.+|..|+|||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~tpL 77 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTLEG-GRKPLHYAADCGQLEILEFLLL----KGADINAPDKHHITPL 77 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCCTT-SSCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTSCCHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHH-cCCCcCccCCC-CCcHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHH
Confidence 5678999999999999999999884 67899999876 9999999999999999999999 7899999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh
Q 021192 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 126 (316)
Q Consensus 90 h~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~ 126 (316)
|+|+..++.+++++|+++|++++.+|..|.||||+|+
T Consensus 78 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 78 LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 9999999999999999999999999999999999997
No 89
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=2e-26 Score=188.06 Aligned_cols=147 Identities=20% Similarity=0.210 Sum_probs=122.9
Q ss_pred HHHHhhCCCcccCCC--CCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhc
Q 021192 30 QRLLRENPSLLNERN--PVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 107 (316)
Q Consensus 30 ~~ll~~~~~~~~~~~--~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~ 107 (316)
+.||.+ +.+++..+ ..+|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|++.
T Consensus 2 ~~ll~~-~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 76 (229)
T 2vge_A 2 RSVLRK-AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK----EMNDPSQPNEEGITALHNAICGANYSIVDFLITA 76 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHH----HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred eehhcc-CCCCccccccccchhHHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 455643 44443322 2337889999999999999999999 7889999999999999999999999999999999
Q ss_pred CCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCC-CCCCCcccccc-CCCChHHHHHHHHHhHHHHHHH
Q 021192 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPLDHLS-NGPGSAKLRELLLWHSEEQRKR 185 (316)
Q Consensus 108 g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~~a-~~~~~~~~~~lL~~~~~~~~~~ 185 (316)
|++++..|..|+||||+|+ ..++.+++++|+++|++++.++ ..|+||||+|+ ...+..+++++|++.+++....
T Consensus 77 ga~~n~~d~~g~tpLh~A~----~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~ 152 (229)
T 2vge_A 77 GANVNSPDSHGWTPLHCAA----SCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM 152 (229)
T ss_dssp TCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc
Confidence 9999999999999999999 8899999999999999999996 69999997762 6677889999999888764443
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=1.1e-26 Score=171.33 Aligned_cols=125 Identities=45% Similarity=0.639 Sum_probs=115.5
Q ss_pred CCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh
Q 021192 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 126 (316)
Q Consensus 47 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~ 126 (316)
+|.||||+|+..|+.+++++|++ .+++++.+|..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Confidence 38999999999999999999999 78899999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhHH
Q 021192 127 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180 (316)
Q Consensus 127 ~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~ 180 (316)
..++.+++++|+++|++++.+|..|.|||++|+. .+..+++++|.++|+
T Consensus 77 ----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~-~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 77 ----RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR-NGHLEVVKLLLEAGA 125 (126)
T ss_dssp ----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHHTC
T ss_pred ----HcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHH-cCcHHHHHHHHHcCC
Confidence 8899999999999999999999999999976665 456677777777653
No 91
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=4.9e-26 Score=174.53 Aligned_cols=124 Identities=19% Similarity=0.282 Sum_probs=117.3
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChH
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~ 88 (316)
.+..|.||||+ |..|+.++++.|+ +.+.+++.++.. |.||||+|+..|+.+++++|++ .|++++.+|..|+||
T Consensus 32 ~~~~g~t~L~~-~~~~~~~~v~~Ll-~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~ 104 (156)
T 1bd8_A 32 LNRFGKTALQV-MMFGSTAIALELL-KQGASPNVQDTS-GTSPVHDAARTGFLDTLKVLVE----HGADVNVPDGTGALP 104 (156)
T ss_dssp CCTTSCCHHHH-SCTTCHHHHHHHH-HTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSCCH
T ss_pred cCCCCCcHHHH-HHcCCHHHHHHHH-HCCCCCCCcCCC-CCCHHHHHHHcCcHHHHHHHHH----cCCCCCCcCCCCCcH
Confidence 36689999999 9999999999988 568899999976 9999999999999999999999 789999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhc
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ 144 (316)
||+|+..|+.+++++|++. ++++.+|..|.||||+|+ ..++.+++++|+++
T Consensus 105 L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~----~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 105 IHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELAL----QRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHH----HSCCHHHHHHHHTT
T ss_pred HHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHH----HcCcHHHHHHHHhh
Confidence 9999999999999999999 999999999999999999 89999999999874
No 92
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=2.4e-27 Score=182.03 Aligned_cols=129 Identities=26% Similarity=0.338 Sum_probs=114.7
Q ss_pred CCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCc-HHHHHh
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT-PLHLSV 126 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~a~ 126 (316)
|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+ .|+.+++++|+++|++++.+|..|.| |||+|+
T Consensus 12 ~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~ 86 (156)
T 1bi7_B 12 SADWLATAAARGRVEEVRALLE----AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA 86 (156)
T ss_dssp STTHHHHHHHHTCHHHHHHHHT----TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred chHHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 8999999999999999999999 78899999999999999985 89999999999999999999999999 999999
Q ss_pred hhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhHHHHHHHh
Q 021192 127 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (316)
Q Consensus 127 ~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (316)
..++.+++++|+++|++++.+|..|+||||+|+. .+..+++++|+++|++...++
T Consensus 87 ----~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~-~~~~~~v~~Ll~~ga~~~~~~ 141 (156)
T 1bi7_B 87 ----REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE-LGHRDVARYLRAAAGGTRGSN 141 (156)
T ss_dssp ----HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHH-HTCHHHHHHHSSCC-------
T ss_pred ----HCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH-hCHHHHHHHHHHcCCCCCccC
Confidence 8899999999999999999999999999976665 456788888888887765544
No 93
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=1e-27 Score=201.41 Aligned_cols=161 Identities=24% Similarity=0.288 Sum_probs=140.2
Q ss_pred ChhhHHHHHhcCCHHHHHHHHhhCC-CcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcc-ccccccCCCChHHH
Q 021192 13 KPATIHGCAQSGDLLAFQRLLRENP-SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV-ELEAQNMYGETPLH 90 (316)
Q Consensus 13 ~~t~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~g~t~Lh 90 (316)
..+++|.|+..|+.+.++.++.... ..+|.+|.. |.||||+|+..|+.+++++|++ .|+ +++.+|..|+||||
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~-g~T~Lh~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~tpL~ 150 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSN-GNTALHYSVSHANFPVVQQLLD----SGVCKVDKQNRAGYSPIM 150 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TSCCCTTCCCTTSCCHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCC-CCCHHHHHHHCCCHHHHHHHHH----CCCCcCCCCCCCCCCHHH
Confidence 3567889999999999998875432 237888876 9999999999999999999999 666 89999999999999
Q ss_pred HHH-----HcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCC
Q 021192 91 MAA-----KNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165 (316)
Q Consensus 91 ~a~-----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~ 165 (316)
+|+ ..++.+++++|++.|++++..|..|+||||+|+ ..|+.+++++|+++|+|++.+|..|+||||+|+..
T Consensus 151 ~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~----~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~ 226 (276)
T 4hbd_A 151 LTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAV----SHGRVDVVKALLACEADVNVQDDDGSTALMCACEH 226 (276)
T ss_dssp HGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHH----HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHC
Confidence 999 668899999999999999999999999999999 88999999999999999999999999999777765
Q ss_pred CChHHHHHHHHH-hHHHHH
Q 021192 166 PGSAKLRELLLW-HSEEQR 183 (316)
Q Consensus 166 ~~~~~~~~lL~~-~~~~~~ 183 (316)
+ ..+++++|+. .+.+..
T Consensus 227 g-~~~iv~~Ll~~~gad~~ 244 (276)
T 4hbd_A 227 G-HKEIAGLLLAVPSCDIS 244 (276)
T ss_dssp T-CHHHHHHHHTSTTCCTT
T ss_pred C-CHHHHHHHHhcCCCCCc
Confidence 4 5666777766 665433
No 94
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=5.2e-27 Score=185.04 Aligned_cols=132 Identities=15% Similarity=0.105 Sum_probs=117.7
Q ss_pred CCChhhHHHHHhcCCHH----HHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCC------HHHHHHHHcCCCCCcccccc
Q 021192 11 SAKPATIHGCAQSGDLL----AFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK------AEIVKSLLEWPGNDKVELEA 80 (316)
Q Consensus 11 ~~~~t~L~~A~~~g~~~----~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~------~~~v~~Ll~~~~~~~~~~~~ 80 (316)
..|+||||+|+..|+.+ +++.|| +.|+++|.++.. |+||||+|+..|+ .+++++|++ .|+++|.
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll-~~Gadvn~~d~~-g~TpLh~a~~~~~~~~~~~~~iv~~Ll~----~Gadin~ 109 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLI-NKGADIKSRTKE-GTTLFFPLFQGGGNDITGTTELCKIFLE----KGADITA 109 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHH-HTTCCSSCCCTT-CCCTHHHHHHHCTTCHHHHHHHHHHHHH----TTCCSSS
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHH-HCCCCCCCCCCC-CCcHHHHHHHcCCcchhhHHHHHHHHHH----CCCCCCc
Confidence 56999999999999864 788777 679999999976 9999999999987 689999999 8999999
Q ss_pred ccCCCC-hHHHHHHHcC-----CHHHHHHHHh-cCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCC
Q 021192 81 QNMYGE-TPLHMAAKNG-----CNEAAKLLLA-HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 152 (316)
Q Consensus 81 ~~~~g~-t~Lh~a~~~~-----~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~ 152 (316)
+|..|+ ||||+|+..+ +.+++++|++ .|++++.+|..|+||||+|+ +.++.+++++|.++..+.+.++
T Consensus 110 ~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~----~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 110 LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK----RCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH----TTTCHHHHHHHHHHHHHHTCCC
T ss_pred cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH----HcCCHHHHHHHHHHHHHHhccc
Confidence 999999 9999999954 3569999999 99999999999999999999 8999999999998766555554
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.93 E-value=1.7e-26 Score=182.03 Aligned_cols=139 Identities=25% Similarity=0.252 Sum_probs=119.9
Q ss_pred CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccccccc-CCCChH
Q 021192 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETP 88 (316)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~t~ 88 (316)
++.|.||||+||..|+.++++.|+. +.+++.++.. |.||||+|+..|+.+++++|++ .|++++.+| ..|+||
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~-g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~~g~tp 113 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAE----AGADLDHRDMRGGLTA 113 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCSSSSCCH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCCH
Confidence 4578999999999999999999986 8899999876 9999999999999999999999 788999998 889999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCCh
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~ 168 (316)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..++. ..+.+||++++. .+.
T Consensus 114 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~----~~~~~-----------------~~~~~~l~~a~~-~~~ 171 (183)
T 3deo_A 114 LHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR----EILKT-----------------TPKGNPMQFGRR-IGL 171 (183)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH----HHHHT-----------------CCCCSHHHHHHH-HHH
T ss_pred HHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHH----HhccC-----------------cccccHHHHHHH-cCH
Confidence 99999999999999999999999999999999999999 32211 346788865554 456
Q ss_pred HHHHHHHHH
Q 021192 169 AKLRELLLW 177 (316)
Q Consensus 169 ~~~~~lL~~ 177 (316)
.+++++|.+
T Consensus 172 ~~i~~~L~~ 180 (183)
T 3deo_A 172 EKVINVLEG 180 (183)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 777777754
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.93 E-value=2.6e-26 Score=189.33 Aligned_cols=140 Identities=26% Similarity=0.264 Sum_probs=122.0
Q ss_pred CCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCcccccccc-CCCChH
Q 021192 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETP 88 (316)
Q Consensus 10 ~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~t~ 88 (316)
++.|.||||+||..|+.++++.|+. +.++|.++.. |.||||+|+..|+.++|++|++ .|++++.+| ..|+||
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~g~t~ 114 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAE----AGADLDHRDMRGGLTA 114 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTT-SCBHHHHHHHHTCHHHHHHHHH----TTCCTTCCCSSSCCCH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCC-CCCHHHHHHHCCCHHHHHHHHH----cCCCCCcCCCCCCCCH
Confidence 3578999999999999999999986 7899999976 9999999999999999999999 789999998 889999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCCh
Q 021192 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168 (316)
Q Consensus 89 Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~ 168 (316)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..+ ....+.|||++++. .+.
T Consensus 115 L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~----~~~-----------------~~~~~~~~l~~a~~-~g~ 172 (244)
T 3ui2_A 115 LHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR----EIL-----------------KTTPKGNPMQFGRR-IGL 172 (244)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH----HHH-----------------TTCCCSSHHHHHHH-HHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH----HHH-----------------hccCCCCHHHHHHH-cCh
Confidence 99999999999999999999999999999999999998 311 12457899966655 456
Q ss_pred HHHHHHHHHh
Q 021192 169 AKLRELLLWH 178 (316)
Q Consensus 169 ~~~~~lL~~~ 178 (316)
..++++|..+
T Consensus 173 ~~iv~~L~~~ 182 (244)
T 3ui2_A 173 EKVINVLEGQ 182 (244)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6788888754
No 97
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.93 E-value=4.5e-27 Score=202.26 Aligned_cols=162 Identities=21% Similarity=0.094 Sum_probs=131.0
Q ss_pred hhHHHHHhcCCHHHHHHHHhhCCCcccC-CCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHH
Q 021192 15 ATIHGCAQSGDLLAFQRLLRENPSLLNE-RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA 93 (316)
Q Consensus 15 t~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~ 93 (316)
+.+|.|+..+..++++.|+ +.+.++|. ++.. |.||||+|+..|+.++|++||+ .|++++.+|..|+||||+|+
T Consensus 99 ~~~~~a~~~~~~~~~~~l~-~~g~dvn~~~d~~-g~TpLh~Aa~~g~~~~v~~Ll~----~Gad~n~~d~~g~TpLh~A~ 172 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFP-NTQLNLNIPVDEH-GNTPLHWLTSIANLELVKHLVK----HGSNRLYGDNMGESCLVKAV 172 (327)
T ss_dssp -----CHHHHHHHHHHHCT-TSCCCSCSCCSTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTBCCTTCCCHHHHHH
T ss_pred chhHHHHHhhHHHHHHHHH-hcCCCcccccCCC-CCcHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHH
Confidence 3457777777666666555 78899999 6766 9999999999999999999999 78999999999999999999
Q ss_pred HcCC---HHHHHHHHhcC-CCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCC-----------------------
Q 021192 94 KNGC---NEAAKLLLAHG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA----------------------- 146 (316)
Q Consensus 94 ~~~~---~~~~~~Ll~~g-~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga----------------------- 146 (316)
..|+ .++++.|++.+ ++++.+|..|+||||+|+......++.+++++|++.++
T Consensus 173 ~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~ 252 (327)
T 1sw6_A 173 KSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 252 (327)
T ss_dssp HSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------
T ss_pred HhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc
Confidence 9998 78888888886 78999999999999999932222899999999997743
Q ss_pred ----------------------CCCCCCCCCCCccccccCCCChHHHHHHHHHhHHHHH
Q 021192 147 ----------------------DCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 183 (316)
Q Consensus 147 ----------------------~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~ 183 (316)
+++.+|..|+||||+|+.. +..+++++|+++|++..
T Consensus 253 ~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~Gad~~ 310 (327)
T 1sw6_A 253 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL-GNISIVDALLDYGADPF 310 (327)
T ss_dssp -------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHH-CCHHHHHHHHHTTCCTT
T ss_pred cccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCc
Confidence 5778888899999766664 45677777777776543
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.92 E-value=1.2e-25 Score=182.65 Aligned_cols=128 Identities=20% Similarity=0.248 Sum_probs=110.4
Q ss_pred CCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhc-CCCccccccCCCcHHHHHh
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLSV 126 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~a~ 126 (316)
|.||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|++. |++++.+|..|.||||+|+
T Consensus 73 g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 73 IDNPLHEAAKRGNLSWLRECLD----NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA 148 (222)
T ss_dssp ESCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred cccccccccccCcHHHHHHHHh----CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence 7899999999999999999999 7899999999999999999999999999999999 9999999999999999999
Q ss_pred hhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhHHHHHH
Q 021192 127 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 184 (316)
Q Consensus 127 ~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~ 184 (316)
..++.+++++|+++|++++.+|..|+||||+|+. .+..++++.|...++....
T Consensus 149 ----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~-~~~~~~l~~l~~~~~~~~~ 201 (222)
T 3ehr_A 149 ----WKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN-AACASLLKKKQGTDAVRTL 201 (222)
T ss_dssp ----HHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCS-HHHHHHHC-----------
T ss_pred ----HcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcc-hhHHHHHHHHhccchhhhc
Confidence 8899999999999999999999999999966654 5667777777776655443
No 99
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.92 E-value=6.4e-25 Score=153.16 Aligned_cols=92 Identities=48% Similarity=0.671 Sum_probs=85.2
Q ss_pred CCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhh
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~ 127 (316)
|+||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~----~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~- 76 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA- 76 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-
T ss_pred CCcHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH-
Confidence 8899999999999999999999 78889999999999999999999999999999999999999999999999999
Q ss_pred hhhccCcHHHHHHHHhcCCC
Q 021192 128 YSIRSEDYATVKTLLEYNAD 147 (316)
Q Consensus 128 ~~~~~~~~~~~~~Ll~~ga~ 147 (316)
..++.+++++|+++|++
T Consensus 77 ---~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 77 ---RNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp ---HTTCHHHHHHHHHTTCC
T ss_pred ---HcCCHHHHHHHHHcCCC
Confidence 88999999999999885
No 100
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.92 E-value=8.9e-25 Score=189.58 Aligned_cols=140 Identities=23% Similarity=0.256 Sum_probs=111.4
Q ss_pred ChhhHHHHHhc-CCHHHHHHHHhhCCCcccCCC--CCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHH
Q 021192 13 KPATIHGCAQS-GDLLAFQRLLRENPSLLNERN--PVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (316)
Q Consensus 13 ~~t~L~~A~~~-g~~~~v~~ll~~~~~~~~~~~--~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L 89 (316)
+.|+||.|+.. |+.++++.|| ..+.++|..+ .. |.||||+|+..|+.+++++|++ .|++++.+|..|+|||
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL-~~Gadvn~~~~~~~-g~TpLh~Aa~~g~~~iv~~LL~----~Gadvn~~d~~G~TpL 272 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADAL-AHGADVNWVNGGQD-NATPLIQATAANSLLACEFLLQ----NGANVNQADSAGRGPL 272 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHH-HTTCCTTCCCTTTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHH
T ss_pred CCcHHHHHHHccCCHHHHHHHH-HcCCCCCccccccC-CCCHHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHH
Confidence 46799999999 9999999888 5778888887 44 9999999999999999999999 7889999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcC---CCCCCCCCCCCCccccc
Q 021192 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN---ADCSAKDNEGKTPLDHL 162 (316)
Q Consensus 90 h~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~g---a~~~~~~~~g~tpl~~~ 162 (316)
|+|+..|+.+++++|+++|++++..|..|.||||+|+ ..++.+++++|+..+ ++....+..+.|+++.+
T Consensus 273 h~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~----~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~ 344 (368)
T 3jue_A 273 HHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAM----ETANADIVTLLRLAKMREAEAAQGQAGDETYLDIF 344 (368)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHHHC-------------------
T ss_pred HHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHH----HCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHH
Confidence 9999999999999999999999999999999999999 889999999998765 34444556677887544
No 101
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.92 E-value=1.7e-24 Score=181.57 Aligned_cols=124 Identities=23% Similarity=0.271 Sum_probs=111.2
Q ss_pred hhhHHHHHhcCCHHHHHHHHhhCCCc------ccCCCCCCCCcHHHHHHhC---CCHHHHHHHHcCCCCCccccccccCC
Q 021192 14 PATIHGCAQSGDLLAFQRLLRENPSL------LNERNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNMY 84 (316)
Q Consensus 14 ~t~L~~A~~~g~~~~v~~ll~~~~~~------~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~ 84 (316)
.++|+.|+..|+.+.++.++.. +.+ ++..+.. |.||||+|+.. |+.+++++|++ .|+++|.+|..
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~-g~t~Lh~A~~~~~~~~~~~v~~Ll~----~ga~in~~d~~ 204 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEP-DETALHLAVRSVDRTSLHIVDFLVQ----NSGNLDKQTGK 204 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSST-TCBHHHHHHHHCCTTTHHHHHHHHH----HCSCTTCCCTT
T ss_pred hhhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccC-CCCcchHHHHhcccchHHHHHHHHH----CCCCccccCCC
Confidence 5689999999999999988854 555 3344554 99999999998 89999999999 78899999999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCC
Q 021192 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147 (316)
Q Consensus 85 g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~ 147 (316)
|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|+++|++
T Consensus 205 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~----~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 205 GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK----RLKHEHCEELLTQALSG 263 (278)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHH----HcCCHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999 88999999999999885
No 102
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.91 E-value=7.9e-26 Score=196.88 Aligned_cols=158 Identities=12% Similarity=0.013 Sum_probs=126.2
Q ss_pred CCChhhHHHHHhcCCHHHHHHHHhhCCCc--ccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccc---cccccCCC
Q 021192 11 SAKPATIHGCAQSGDLLAFQRLLRENPSL--LNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE---LEAQNMYG 85 (316)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~---~~~~~~~g 85 (316)
..+.||||+||..|+.++|++|+..+..+ .+..+.. |.||||+|+..|+.++|++|++ .|++ .+..+.+
T Consensus 90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~-~~tpL~~Aa~~G~~eiv~~Ll~----~gad~~~~~i~~~~- 163 (376)
T 2aja_A 90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE-NYQAFRLAAENGHLHVLNRLCE----LAPTEIMAMIQAEN- 163 (376)
T ss_dssp CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHH-HHHHHHHHHHTTCHHHHHHHHH----SCTTTHHHHHSHHH-
T ss_pred CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccC-CCCHHHHHHHcCCHHHHHHHHh----CCCCccccccCCCC-
Confidence 45679999999999999999999654321 1122333 7899999999999999999999 5643 2333333
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCCccc--cccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCcccccc
Q 021192 86 ETPLHMAAKNGCNEAAKLLLAHGAFIEA--KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 163 (316)
Q Consensus 86 ~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a 163 (316)
+||||+|+..|+.+++++|+++|++++. .|..|.||||+|+. ..|+.++|++|+++|++ |.|||++|+
T Consensus 164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~---~~G~~eiv~~Ll~~ga~-------~~taL~~Aa 233 (376)
T 2aja_A 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV---GRGHHNVINFLLDCPVM-------LAYAEIHEF 233 (376)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHS---TTCCHHHHHHHTTSHHH-------HHHHHHCTT
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHH---HCCCHHHHHHHHhCCCc-------cchHHHHHH
Confidence 8999999999999999999999999987 89999999999981 35899999999998753 899996666
Q ss_pred CCCChHHHHHHHHHhHHHHHHH
Q 021192 164 NGPGSAKLRELLLWHSEEQRKR 185 (316)
Q Consensus 164 ~~~~~~~~~~lL~~~~~~~~~~ 185 (316)
. .++.+++++|.+++++....
T Consensus 234 ~-~g~~evv~lL~~~ga~~~~~ 254 (376)
T 2aja_A 234 E-YGEKYVNPFIARHVNRLKEM 254 (376)
T ss_dssp T-TTTTTHHHHHHHHHHHHHHH
T ss_pred H-CCCHHHHHHHHhcCcccccc
Confidence 5 45566999999988776544
No 103
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.91 E-value=8.7e-25 Score=158.74 Aligned_cols=108 Identities=39% Similarity=0.491 Sum_probs=94.8
Q ss_pred CCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHH
Q 021192 43 RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL 122 (316)
Q Consensus 43 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L 122 (316)
+|.. |.||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..++.+++++|++.|++++.+|..|.|||
T Consensus 5 ~d~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl 79 (115)
T 2l6b_A 5 GSKD-GNTPLHNAAKNGHAEEVKKLLS----KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPE 79 (115)
T ss_dssp CSCS-SCCHHHHHHHHTCHHHHHHHTT----TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTT
T ss_pred cCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 4444 8999999999999999999998 7888999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCcc
Q 021192 123 HLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159 (316)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl 159 (316)
|+|+ ..++.+++++|+++|++++.++..|.+|-
T Consensus 80 ~~A~----~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 80 HLAK----KNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHHH----TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHH----HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 9999 88899999999999999999998888874
No 104
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=6.9e-25 Score=172.77 Aligned_cols=108 Identities=27% Similarity=0.404 Sum_probs=103.2
Q ss_pred CCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccc-cCCCcHHHHHh
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLSV 126 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~a~ 126 (316)
|.||||+|+..|+.+++++|++ +++++.+|..|+||||+|+..|+.+++++|+++|++++..| ..|+||||+|+
T Consensus 44 g~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 44 YETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTT-----TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHh-----cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 8899999999999999999997 56899999999999999999999999999999999999998 89999999999
Q ss_pred hhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccC
Q 021192 127 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (316)
Q Consensus 127 ~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~ 164 (316)
..++.+++++|+++|++++.+|..|+||||+|+.
T Consensus 119 ----~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 152 (183)
T 3deo_A 119 ----GYVRPEVVEALVELGADIEVEDERGLTALELARE 152 (183)
T ss_dssp ----HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred ----hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHH
Confidence 8899999999999999999999999999977764
No 105
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.90 E-value=3.9e-24 Score=176.26 Aligned_cols=140 Identities=21% Similarity=0.259 Sum_probs=120.4
Q ss_pred CCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHH
Q 021192 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (316)
Q Consensus 11 ~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh 90 (316)
..+.+++..++..|+.+.+..+. ..+.+++ .. |.||||+|+..|+.+++++|++ +++++.+|..|+||||
T Consensus 13 ~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~~---~~-g~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~ 82 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGHSPSWVPSS-YIAADVV---SE-YETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALL 82 (244)
T ss_dssp TTTEEEEEEEESSCCCCEEEEGG-GSCHHHH---HH-HHHHHHHHHTTTCHHHHHHTTT-----TCCTTCBCTTSCBHHH
T ss_pred CCCccHHHHHHHcCCCccccccc-ccccccc---cC-CCCHHHHHHHcCCHHHHHHHHc-----CCCCCCcCCCCCCHHH
Confidence 45667777777777766655333 2333333 12 8899999999999999999997 4689999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCccccc-cCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccC
Q 021192 91 MAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (316)
Q Consensus 91 ~a~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~ 164 (316)
+|+..|+.+++++|+++|++++..| ..|.||||+|+ ..++.+++++|+++|++++.+|..|+||||+|+.
T Consensus 83 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~----~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~ 153 (244)
T 3ui2_A 83 FVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA----GYVRPEVVEALVELGADIEVEDERGLTALELARE 153 (244)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence 9999999999999999999999998 88999999999 8999999999999999999999999999987763
No 106
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.89 E-value=4.6e-23 Score=143.67 Aligned_cols=93 Identities=39% Similarity=0.578 Sum_probs=86.8
Q ss_pred CChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHH
Q 021192 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (316)
Q Consensus 12 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~ 91 (316)
+|+||||+||..|+.++++.|+ +.+.++|.++.. |.||||+|+..|+.+++++|++ .|++++.+|..|+||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~n~~d~~-g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~t~l~~ 74 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHL 74 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHH-HcCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHH
Confidence 4789999999999999999888 568999999987 9999999999999999999999 789999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCC
Q 021192 92 AAKNGCNEAAKLLLAHGAF 110 (316)
Q Consensus 92 a~~~~~~~~~~~Ll~~g~~ 110 (316)
|+..|+.+++++|++.|++
T Consensus 75 A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 75 AARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HHHTTCHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999985
No 107
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.89 E-value=1.4e-22 Score=169.94 Aligned_cols=162 Identities=18% Similarity=0.178 Sum_probs=130.6
Q ss_pred CCCCChhhHHHHHhcCCHHHHHHHHhhCCCccc--CCCC----------------------------CCCCcHHHHHHhC
Q 021192 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLN--ERNP----------------------------VMAQTPLHVSAGY 58 (316)
Q Consensus 9 ~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~--~~~~----------------------------~~g~t~Lh~A~~~ 58 (316)
.+.-+.+.|+.+...|+..... +++..-.... .++. ....++||.|+..
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~-i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~ 140 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNE-IMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKT 140 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHH-HHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHcCcHHHHH-HHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhh
Confidence 4667888999999999865554 3432111100 0000 0023589999999
Q ss_pred CCHHHHHHHHcCCCCCccc------cccccCCCChHHHHHHHc---CCHHHHHHHHhcCCCccccccCCCcHHHHHhhhh
Q 021192 59 NKAEIVKSLLEWPGNDKVE------LEAQNMYGETPLHMAAKN---GCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 129 (316)
Q Consensus 59 g~~~~v~~Ll~~~~~~~~~------~~~~~~~g~t~Lh~a~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~~ 129 (316)
|+.+.++.++. .|.+ ++..|..|+||||+|+.. ++.+++++|+++|+++|.+|..|+||||+|+
T Consensus 141 ~d~~~~~~ll~----~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~--- 213 (278)
T 1dcq_A 141 RDIFGLLQAYA----DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC--- 213 (278)
T ss_dssp TCHHHHHHHHH----TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHH---
T ss_pred cccHHHHHHHH----hhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHH---
Confidence 99999999999 5555 555688999999999999 8999999999999999999999999999999
Q ss_pred hccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhHH
Q 021192 130 IRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180 (316)
Q Consensus 130 ~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~ 180 (316)
..|+.+++++|+++|+|++.+|..|.||||+|+.. +..+++++|.++++
T Consensus 214 -~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~-~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 214 -LTDNAECLKLLLRGKASIEIANESGETPLDIAKRL-KHEHCEELLTQALS 262 (278)
T ss_dssp -HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHHT
T ss_pred -HcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc-CCHHHHHHHHHcCC
Confidence 89999999999999999999999999999777664 56778888887764
No 108
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.89 E-value=2.6e-23 Score=150.89 Aligned_cols=109 Identities=33% Similarity=0.440 Sum_probs=100.1
Q ss_pred cCCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCCh
Q 021192 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (316)
Q Consensus 8 ~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (316)
..+..|.|+||+||..|+.++++.|+ +.+.+++.++.. |.||||+|+..|+.+++++|++ .|++++.+|..|+|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~d~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~d~~g~t 77 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLA----KGADVNARSKDGNT 77 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHT-TTTCCSSCCCSS-SCCTTHHHHTTTCHHHHHHHTT----TTCCTTCCCTTCCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCC-CCCHHHHHHHcCcHHHHHHHHH----cCCCCcccCCCCCC
Confidence 45778999999999999999999888 567889999876 9999999999999999999999 78999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHH
Q 021192 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL 122 (316)
Q Consensus 88 ~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L 122 (316)
|||+|+..++.+++++|+++|+++|..+..|.||-
T Consensus 78 pl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 78 PEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 99999999999999999999999999999998874
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.88 E-value=9.2e-23 Score=176.94 Aligned_cols=123 Identities=24% Similarity=0.274 Sum_probs=113.3
Q ss_pred CCcHHHHHHhC-CCHHHHHHHHcCCCCCcccccccc--CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHH
Q 021192 48 AQTPLHVSAGY-NKAEIVKSLLEWPGNDKVELEAQN--MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL 124 (316)
Q Consensus 48 g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~--~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~ 124 (316)
+.|+||+|+.. |+.+++++|++ .|++++..+ ..|+||||+|+..|+.+++++|+++|+++|..|..|+||||+
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~----~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~ 274 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALA----HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH 274 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHH----TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHH----cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 55899999999 99999999999 789999998 899999999999999999999999999999999999999999
Q ss_pred HhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhH
Q 021192 125 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 179 (316)
Q Consensus 125 a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~ 179 (316)
|+ ..++.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|+..+
T Consensus 275 A~----~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~-g~~~iv~lLl~~~ 324 (368)
T 3jue_A 275 AT----ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET-ANADIVTLLRLAK 324 (368)
T ss_dssp HH----HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HH----HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHC-CCHHHHHHHHHcC
Confidence 99 88999999999999999999999999999776664 5566777777655
No 110
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=171.34 Aligned_cols=124 Identities=21% Similarity=0.219 Sum_probs=113.1
Q ss_pred CcHHHHHHhCCCHHHHHHHHcCCCCCcccccc------ccCCCChHHHHHHHc---CCHHHHHHHHhcCCCccccccCCC
Q 021192 49 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA------QNMYGETPLHMAAKN---GCNEAAKLLLAHGAFIEAKANNGM 119 (316)
Q Consensus 49 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~------~~~~g~t~Lh~a~~~---~~~~~~~~Ll~~g~~~~~~~~~g~ 119 (316)
.++||.|+..|+.+.++.|++ .+++++. .|..|+||||+|+.. ++.+++++|+++|+++|.+|..|+
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~----~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~ 227 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFA----NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN 227 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred HHHHhhhhhccCHHHHHHHHh----cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence 467999999999999999999 7788887 689999999999997 899999999999999999999999
Q ss_pred cHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhHHH
Q 021192 120 TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181 (316)
Q Consensus 120 t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~ 181 (316)
||||+|+ ..++.+++++|+++|++++.+|..|.||||+|+. .+..+++++|..++++
T Consensus 228 TpLh~A~----~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~-~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 228 TALHYAA----LYNQPDCLKLLLKGRALVGTVNEAGETALDIARK-KHHKECEELLEQAQAG 284 (301)
T ss_dssp CHHHHHH----HTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHH-HTCHHHHHHHHHHHHH
T ss_pred CHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH-cCCHHHHHHHHHhcCC
Confidence 9999999 8899999999999999999999999999977665 4566788888887765
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.88 E-value=9.8e-23 Score=184.80 Aligned_cols=128 Identities=20% Similarity=0.210 Sum_probs=114.1
Q ss_pred CCcHHHHHHhCCCHHHHHHHHcCCCCCccccccc------cCCCChHHHHHHH---cCCHHHHHHHHhcCCCccccccCC
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ------NMYGETPLHMAAK---NGCNEAAKLLLAHGAFIEAKANNG 118 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~------~~~g~t~Lh~a~~---~~~~~~~~~Ll~~g~~~~~~~~~g 118 (316)
..+.||.|+..|+.++++.||+ .|+++|.+ |..|+||||+||. .|+.+++++|+++|+++|.+|..|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~----~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g 207 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFA----NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG 207 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHH----TTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSS
T ss_pred cHHHHHHHHhccCHHHHHHHHh----hcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCC
Confidence 3467999999999999999999 77888877 8899999999976 899999999999999999999999
Q ss_pred CcHHHHHhhhhhccCcHHHHHHHHhcCCCCCCCCCCCCCccccccCCCChHHHHHHHHHhHHHHHH
Q 021192 119 MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 184 (316)
Q Consensus 119 ~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~ 184 (316)
+||||+|+ ..|+.+++++|+++|||++.+|..|+||||+|+. .++..++++|+++|++...
T Consensus 208 ~TpLh~A~----~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~-~~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 208 NTALHYAA----LYNQPDCLKLLLKGRALVGTVNEAGETALDIARK-KHHKECEELLEQAQAGTFA 268 (497)
T ss_dssp CCHHHHHT----TTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHH-TTCHHHHHHHHHTCC----
T ss_pred CcHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH-cCCHHHHHHHHHhCCCCCC
Confidence 99999999 8999999999999999999999999999976665 5667888888888877554
No 112
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.86 E-value=3.3e-23 Score=180.35 Aligned_cols=153 Identities=12% Similarity=0.043 Sum_probs=119.6
Q ss_pred hhhHHHHHh-cCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHH
Q 021192 14 PATIHGCAQ-SGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (316)
Q Consensus 14 ~t~L~~A~~-~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a 92 (316)
.++++.|+. .++.+.++.++.. +.+ +.||||+|++.|+.++|++|++.++. ....+..+..|.||||+|
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~~-g~~--------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~-~~~~~~~~~~~~tpL~~A 135 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHKK-GIK--------SEVICFVAAITGCSSALDTLCLLLTS-DEIVKVIQAENYQAFRLA 135 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHH-TCC--------HHHHHHHHHHHCCHHHHHHHTTC--C-CSSCC--CHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHc-CCC--------cCCHHHHHHHcCCHHHHHHHHHcCCc-HHHHHHhccCCCCHHHHH
Confidence 456777766 5777888877754 322 56999999999999999999994321 112233445688999999
Q ss_pred HHcCCHHHHHHHHhcCCC---ccccccCCCcHHHHHhhhhhccCcHHHHHHHHhcCCCCCC--CCCCCCCccccccCCCC
Q 021192 93 AKNGCNEAAKLLLAHGAF---IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSA--KDNEGKTPLDHLSNGPG 167 (316)
Q Consensus 93 ~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~Ll~~ga~~~~--~~~~g~tpl~~~a~~~~ 167 (316)
+..|+.+++++|+++|++ .+..+.+ .||||+|+ ..|+.+++++|+++|++++. +|..|.||||+|+...+
T Consensus 136 a~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa----~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G 210 (376)
T 2aja_A 136 AENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA----ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 210 (376)
T ss_dssp HHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH----HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH----HCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCC
Confidence 999999999999999986 3333333 99999999 89999999999999999987 88899999977773567
Q ss_pred hHHHHHHHHHhHHH
Q 021192 168 SAKLRELLLWHSEE 181 (316)
Q Consensus 168 ~~~~~~lL~~~~~~ 181 (316)
+.+++++|.+++..
T Consensus 211 ~~eiv~~Ll~~ga~ 224 (376)
T 2aja_A 211 HHNVINFLLDCPVM 224 (376)
T ss_dssp CHHHHHHHTTSHHH
T ss_pred CHHHHHHHHhCCCc
Confidence 78888888887754
No 113
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=8.3e-21 Score=163.52 Aligned_cols=103 Identities=20% Similarity=0.344 Sum_probs=95.4
Q ss_pred HHHHhhhhchHHHHHHHHHHHHH-HHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeee
Q 021192 202 ENELSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~ 280 (316)
...|+++.|++++++.+++.+.. +..+.....+|. .+|++++||||||||||.+|+++|+++.. +|+.
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi----~~prGvLL~GPPGTGKTllAkAiA~e~~~-------~f~~ 212 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI----AQPKGVILYGPPGTGKTLLARAVAHHTDC-------KFIR 212 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC----CCCCCEEEESCSSSSHHHHHHHHHHHHTC-------EEEE
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCceEEeCCCCCCHHHHHHHHHHhhCC-------CceE
Confidence 35689999999999999997775 777777778787 57889999999999999999999999999 9999
Q ss_pred ecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 281 VQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
++.++++++|+|++++++|++|+.|+..+||||||
T Consensus 213 v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFi 247 (405)
T 4b4t_J 213 VSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFM 247 (405)
T ss_dssp EEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred EEhHHhhccccchHHHHHHHHHHHHHHhCCceEee
Confidence 99999999999999999999999999999999997
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.83 E-value=1e-20 Score=135.94 Aligned_cols=86 Identities=30% Similarity=0.432 Sum_probs=65.2
Q ss_pred CCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhh
Q 021192 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (316)
Q Consensus 48 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~ 127 (316)
|.||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 24 g~t~L~~A~~~g~~~~v~~Ll~----~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~- 98 (110)
T 2zgd_A 24 LGKKLLEAARAGQDDEVRILMA----NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI- 98 (110)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-
T ss_pred cchHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH-
Confidence 7777777777777777777777 56777777777777777777777777777777777777777777777777777
Q ss_pred hhhccCcHHHHHHH
Q 021192 128 YSIRSEDYATVKTL 141 (316)
Q Consensus 128 ~~~~~~~~~~~~~L 141 (316)
..++.+++++|
T Consensus 99 ---~~~~~~~~~~L 109 (110)
T 2zgd_A 99 ---DNGNEDLAEIL 109 (110)
T ss_dssp ---HHTCHHHHHHH
T ss_pred ---HcCCHHHHHHh
Confidence 66777777765
No 115
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.81 E-value=1.1e-19 Score=130.61 Aligned_cols=93 Identities=26% Similarity=0.391 Sum_probs=83.5
Q ss_pred cccCCCCChhhHHHHHhcCCHHHHHHHHhhCCCcccCCCCCCCCcHHHHHHhCCCHHHHHHHHcCCCCCccccccccCCC
Q 021192 6 DRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG 85 (316)
Q Consensus 6 ~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g 85 (316)
..+.++.|.|+||+||..|+.++++.|+ +.+.+++.++.. |.||||+|+..|+.+++++|++ .|++++.+|..|
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~i~~~d~~-g~tpLh~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g 90 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILM-ANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLE----AGADVXAQDKFG 90 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTS
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHH-HcCCCCCccCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCccccccCC
Confidence 3456889999999999999999999998 568899999876 9999999999999999999999 789999999999
Q ss_pred ChHHHHHHHcCCHHHHHHH
Q 021192 86 ETPLHMAAKNGCNEAAKLL 104 (316)
Q Consensus 86 ~t~Lh~a~~~~~~~~~~~L 104 (316)
+||||+|+..++.+++++|
T Consensus 91 ~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 91 KTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CCHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHh
Confidence 9999999999999999987
No 116
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.9e-20 Score=159.10 Aligned_cols=103 Identities=19% Similarity=0.342 Sum_probs=94.5
Q ss_pred HHHHhhhhchHHHHHHHHHHHHH-HHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeee
Q 021192 202 ENELSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~ 280 (316)
...|+++.|++++++.+++.+.. +..+.....+|. .+|++++||||||||||.+|+++|.++.. +|+.
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi----~~prGvLLyGPPGTGKTlLAkAiA~e~~~-------~fi~ 246 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI----KPPKGVILYGAPGTGKTLLAKAVANQTSA-------TFLR 246 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC----CCCSEEEEESSTTTTHHHHHHHHHHHHTC-------EEEE
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCCCceECCCCchHHHHHHHHHHHhCC-------CEEE
Confidence 45789999999999999997764 566666777776 57899999999999999999999999999 9999
Q ss_pred ecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 281 VQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
++.++++++|+|++++++|++|+.|+..+||||||
T Consensus 247 v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfi 281 (437)
T 4b4t_I 247 IVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFI 281 (437)
T ss_dssp EESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred EEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEE
Confidence 99999999999999999999999999999999997
No 117
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=6.7e-20 Score=159.81 Aligned_cols=102 Identities=26% Similarity=0.408 Sum_probs=94.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHH-HHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeee
Q 021192 203 NELSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~ 281 (316)
..|+++.|++++++.+++.+.. +..+.....+|+ .+|++++||||||||||++|+++|+++.. +|+.+
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi----~pprGILLyGPPGTGKTlLAkAiA~e~~~-------~fi~v 274 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI----DPPKGILLYGPPGTGKTLCARAVANRTDA-------TFIRV 274 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC----CCCSEEEECSCTTSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC----CCCCceEeeCCCCCcHHHHHHHHHhccCC-------CeEEE
Confidence 4678999999999999997664 677777777777 58899999999999999999999999999 99999
Q ss_pred cccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 282 QRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+.++++++|+|++++++|++|+.|+..+||||||
T Consensus 275 s~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfi 308 (467)
T 4b4t_H 275 IGSELVQKYVGEGARMVRELFEMARTKKACIIFF 308 (467)
T ss_dssp EGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred EhHHhhcccCCHHHHHHHHHHHHHHhcCCceEee
Confidence 9999999999999999999999999999999997
No 118
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.8e-19 Score=157.76 Aligned_cols=103 Identities=22% Similarity=0.366 Sum_probs=94.9
Q ss_pred HHHHhhhhchHHHHHHHHHHHHH-HHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeee
Q 021192 202 ENELSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~ 280 (316)
...|+++.|+++.++.+++.+.. +..+.....+|. .+|++++||||||||||++|+++|.++.. +|+.
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~----~~prGvLL~GPPGtGKTllAkAiA~e~~~-------~~~~ 245 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI----KPPKGVLLYGPPGTGKTLLAKAVAATIGA-------NFIF 245 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC----CCCCEEEEESCTTSSHHHHHHHHHHHHTC-------EEEE
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEE
Confidence 45689999999999999997765 667777777777 58899999999999999999999999999 9999
Q ss_pred ecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 281 VQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
++.++++++|+|++++.++++|..|+..+||||||
T Consensus 246 v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~Iifi 280 (437)
T 4b4t_L 246 SPASGIVDKYIGESARIIREMFAYAKEHEPCIIFM 280 (437)
T ss_dssp EEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEE
T ss_pred EehhhhccccchHHHHHHHHHHHHHHhcCCceeee
Confidence 99999999999999999999999999999999997
No 119
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.6e-19 Score=156.42 Aligned_cols=103 Identities=19% Similarity=0.356 Sum_probs=94.4
Q ss_pred HHHHhhhhchHHHHHHHHHHHH-HHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeee
Q 021192 202 ENELSNIVGLHELKIQLRKWAK-GMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~ 280 (316)
...|+++.|++.+++.+++.+. .+..+.....+|. .+|++++||||||||||++|+++|+++.. +|+.
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~----~~prGiLL~GPPGtGKT~lakAiA~~~~~-------~~~~ 236 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI----DPPRGVLLYGPPGTGKTMLVKAVANSTKA-------AFIR 236 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC----CCCCEEEEESCTTTTHHHHHHHHHHHHTC-------EEEE
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCceEEEECCCCCCHHHHHHHHHHHhCC-------CeEE
Confidence 3568999999999999999766 4667777777777 57889999999999999999999999998 9999
Q ss_pred ecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 281 VQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
++.++++++|+|++++++|++|+.|+..+||||||
T Consensus 237 v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~Iifi 271 (428)
T 4b4t_K 237 VNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFI 271 (428)
T ss_dssp EEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred EecchhhccccchhHHHHHHHHHHHHHcCCCeeec
Confidence 99999999999999999999999999999999997
No 120
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.4e-19 Score=158.23 Aligned_cols=103 Identities=23% Similarity=0.338 Sum_probs=93.6
Q ss_pred HHHHhhhhchHHHHHHHHHHHH-HHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeee
Q 021192 202 ENELSNIVGLHELKIQLRKWAK-GMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~ 280 (316)
...|+++.|++++++.+++.+. .+..+.....+|. .+|++++||||||||||.+|+++|.++.. +|+.
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~----~~prGvLLyGPPGTGKTllAkAiA~e~~~-------~f~~ 245 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI----RAPKGALMYGPPGTGKTLLARACAAQTNA-------TFLK 245 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC----CCCCEEEEESCTTSSHHHHHHHHHHHHTC-------EEEE
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCeeEEECcCCCCHHHHHHHHHHHhCC-------CEEE
Confidence 4568999999999999998654 4666666677776 57889999999999999999999999999 9999
Q ss_pred ecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 281 VQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
++.++++++|+|++++++|++|+.|+..+||||||
T Consensus 246 v~~s~l~~~~vGese~~ir~lF~~A~~~aP~Iifi 280 (434)
T 4b4t_M 246 LAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFI 280 (434)
T ss_dssp EEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred EehhhhhhcccchHHHHHHHHHHHHHhcCCeEEee
Confidence 99999999999999999999999999999999997
No 121
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.67 E-value=1.4e-17 Score=155.75 Aligned_cols=102 Identities=21% Similarity=0.363 Sum_probs=85.8
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
.|+++.+++++++.+.+.+.. +..+..........++.+++||||||||||.+|+++|+++.. +|+.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~---p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~-------~f~~v~~ 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQY---PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKG 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTT---TTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC-------EEEECCH
T ss_pred CHHHhCCHHHHHHHHHHHHHh---hhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC-------ceEEecc
Confidence 467788899999998875432 222222223334468889999999999999999999999998 9999999
Q ss_pred cccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 284 TDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
++++++|+|++++++|++|+.|+..+||||||
T Consensus 545 ~~l~s~~vGese~~vr~lF~~Ar~~~P~Iifi 576 (806)
T 3cf2_A 545 PELLTMWFGESEANVREIFDKARQAAPCVLFF 576 (806)
T ss_dssp HHHHTTTCSSCHHHHHHHHHHHHTTCSEEEEC
T ss_pred chhhccccchHHHHHHHHHHHHHHcCCceeec
Confidence 99999999999999999999999999999997
No 122
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.67 E-value=2.2e-17 Score=154.40 Aligned_cols=102 Identities=20% Similarity=0.318 Sum_probs=89.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHH-HHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeee
Q 021192 203 NELSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~ 281 (316)
..++++.|++..++.+++++.. +..+..... ....+|.+++|+||||||||++||++|+++.. +++.+
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~----~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-------~~~~v 269 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKA----IGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLI 269 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTS----CCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC-------EEEEE
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhh----cCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------eEEEE
Confidence 4578899999999999987653 333333333 34468999999999999999999999999988 99999
Q ss_pred cccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 282 QRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
++++++++|+|++++++|++|+.|+..+||||||
T Consensus 270 ~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfI 303 (806)
T 3cf2_A 270 NGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303 (806)
T ss_dssp EHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEE
T ss_pred EhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEE
Confidence 9999999999999999999999999999999997
No 123
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.54 E-value=1.4e-14 Score=122.51 Aligned_cols=102 Identities=19% Similarity=0.369 Sum_probs=87.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHH-HHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeee
Q 021192 203 NELSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~ 281 (316)
..+++++|++.+++.+++.+.. +..+.....++. .++.+++|+||||||||++|+++++.+.. +++.+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~----~~~~~vLL~Gp~GtGKT~la~ala~~~~~-------~~i~v 80 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM----TPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISI 80 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC----CCCSEEEEECSSSSSHHHHHHHHHHHTTC-------EEEEE
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC----CCCceEEEECCCCcCHHHHHHHHHHHhCC-------CEEEE
Confidence 3467899999999999987653 444444455554 46778999999999999999999999876 89999
Q ss_pred cccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 282 QRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+.+++.++|+|++++.++.+|+.|....|+||||
T Consensus 81 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~i 114 (301)
T 3cf0_A 81 KGPELLTMWFGESEANVREIFDKARQAAPCVLFF 114 (301)
T ss_dssp CHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEE
T ss_pred EhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEE
Confidence 9999999999999999999999999999999997
No 124
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.54 E-value=2.1e-14 Score=127.57 Aligned_cols=102 Identities=24% Similarity=0.397 Sum_probs=89.3
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..+++++|.++.++.++++...+........++. ..|.+++++||||||||++|++++.+... +++.++
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~----~~p~gvLL~GppGtGKT~Laraia~~~~~-------~f~~is 81 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGA----RMPKGILLVGPPGTGKTLLARAVAGEANV-------PFFHIS 81 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTC----CCCSEEEEECCTTSSHHHHHHHHHHHHTC-------CEEEEE
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCC----CCCCeEEEECCCCCCHHHHHHHHHHHcCC-------CeeeCC
Confidence 3577899999999999998776655555555554 46678999999999999999999999876 999999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.++++..|+|.+++++|.+|+.|+.+.||||||
T Consensus 82 ~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfI 114 (476)
T 2ce7_A 82 GSDFVELFVGVGAARVRDLFAQAKAHAPCIVFI 114 (476)
T ss_dssp GGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999999999997
No 125
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.54 E-value=2.7e-14 Score=121.87 Aligned_cols=102 Identities=19% Similarity=0.216 Sum_probs=83.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHH-hhcCCCCCCCeeee
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL-YMVGILPTDRVTEV 281 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~-~~~g~~~~~~~~~~ 281 (316)
..|+++.|++.+++.+++.+.. +........ -...++.+++|+||||||||++|+++++++ .. +++.+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~---p~~~~~~~~-~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-------~~~~i 77 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVIL---PIKFPHLFT-GKRTPWRGILLFGPPGTGKSYLAKAVATEANNS-------TFFSI 77 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHH---HHHCGGGSC-TTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC-------EEEEE
T ss_pred CCHHHhcCHHHHHHHHHHHHHH---HHhCHHHHh-CCCCCCceEEEECCCCccHHHHHHHHHHHcCCC-------cEEEE
Confidence 3578899999999999886542 222222211 123467899999999999999999999998 44 89999
Q ss_pred cccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 282 QRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+.++++++|+|++++.++++|+.|+...|+||||
T Consensus 78 ~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~i 111 (322)
T 1xwi_A 78 SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFI 111 (322)
T ss_dssp ECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEE
T ss_pred EhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEe
Confidence 9999999999999999999999999999999997
No 126
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.51 E-value=3.4e-14 Score=121.41 Aligned_cols=102 Identities=20% Similarity=0.261 Sum_probs=85.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..|++++|++.+++.+.+.+... ....... .....++.+++|+||||||||++|+++++++.. +++.++
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~---~~~~~~~-~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-------~~~~v~ 83 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILP---VKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANS-------TFFSVS 83 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHH---HHCGGGC-CTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC-------EEEEEE
T ss_pred CCHHHhcChHHHHHHHHHHHHHH---HhCHHHH-hcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC-------CEEEEc
Confidence 35788999999999998865432 2222111 123356789999999999999999999999877 999999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.+++.++|+|+++..++++|+.|+...|+||||
T Consensus 84 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~i 116 (322)
T 3eie_A 84 SSDLVSKWMGESEKLVKQLFAMARENKPSIIFI 116 (322)
T ss_dssp HHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEE
T ss_pred hHHHhhcccchHHHHHHHHHHHHHhcCCeEEEe
Confidence 999999999999999999999999999999997
No 127
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.50 E-value=2.7e-13 Score=115.30 Aligned_cols=115 Identities=37% Similarity=0.614 Sum_probs=98.8
Q ss_pred hhHHHHHHHh-hhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCC
Q 021192 197 KMDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT 275 (316)
Q Consensus 197 ~~~~~~~~l~-~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~ 275 (316)
...+....++ +++|++.+++.+.+++........+...++... ..+.+++|+||||||||++|+++++.+...+....
T Consensus 21 ~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~ 99 (309)
T 3syl_A 21 GAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRK 99 (309)
T ss_dssp THHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSS
T ss_pred cHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCC
Confidence 3455566666 699999999999998888777777888887654 46678999999999999999999999999888888
Q ss_pred CCeeeecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 276 DRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 276 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.+++.++.+++++.|+|+++..++++|+.+. ++||||
T Consensus 100 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~---~~vl~i 136 (309)
T 3syl_A 100 GHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM---GGVLFI 136 (309)
T ss_dssp CCEEEECGGGTCCSSTTCHHHHHHHHHHHHT---TSEEEE
T ss_pred CcEEEEcHHHhhhhcccccHHHHHHHHHhcC---CCEEEE
Confidence 8999999999999999999999999999984 346664
No 128
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.50 E-value=6.2e-14 Score=115.98 Aligned_cols=102 Identities=24% Similarity=0.409 Sum_probs=83.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..+++++|.+.+++.+.+++..+.........+. ..+.+++++||||||||++|+++++.+.. +++.++
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~i~ 77 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGG----KIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------PFFTIS 77 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC---------CCCCEEEEECCTTSCHHHHHHHHHHHHTC-------CEEEEC
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCC----CCCCeEEEECcCCCCHHHHHHHHHHHcCC-------CEEEEe
Confidence 3578899999999999887665433322222222 45678999999999999999999998876 899999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.+++.+.+.|++++.++.+|+.|....|+++||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~i 110 (257)
T 1lv7_A 78 GSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFI 110 (257)
T ss_dssp SCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehh
Confidence 999999999999999999999999999999986
No 129
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.48 E-value=8.2e-14 Score=115.96 Aligned_cols=103 Identities=22% Similarity=0.380 Sum_probs=82.7
Q ss_pred HHHHhhhhchHHHHHHHHHHH-HHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeee
Q 021192 202 ENELSNIVGLHELKIQLRKWA-KGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (316)
Q Consensus 202 ~~~l~~i~~~~~~k~~l~~~~-~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~ 280 (316)
...|+++.|++++++.+++.+ ..+.........++ ..+.+++++||||||||+++++++..+.. +++.
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l----~~~~GvlL~Gp~GtGKTtLakala~~~~~-------~~i~ 74 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGL----VTPAGVLLAGPPGCGKTLLAKAVANESGL-------NFIS 74 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTC----CCCSEEEEESSTTSCHHHHHHHHHHHTTC-------EEEE
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC----CCCCeEEEECCCCCcHHHHHHHHHHHcCC-------CEEE
Confidence 356788999999999998743 34455555556665 45567999999999999999999998765 7899
Q ss_pred ecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 281 VQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
++..++.++|.|++++.++.+|+.|....|+|+|+
T Consensus 75 i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 75 VKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp EETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred EEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 99999999999999999999999999999999986
No 130
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=115.04 Aligned_cols=101 Identities=23% Similarity=0.436 Sum_probs=83.2
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
.+++++|.+.+++.++++...+.........+. ..+.+++|+||||||||++|+++++.+.. +++.++.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~----~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~~~~ 72 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGA----KVPKGALLLGPPGCGKTLLAKAVATEAQV-------PFLAMAG 72 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------C----CCCCEEEEESCTTSSHHHHHHHHHHHHTC-------CEEEEET
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCC----CCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEech
Confidence 367789999999999887665443333333333 56788999999999999999999999876 8999999
Q ss_pred cccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 284 TDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+++.+.|.|.++..++.+|+.|....|+||||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~i 104 (262)
T 2qz4_A 73 AEFVEVIGGLGAARVRSLFKEARARAPCIVYI 104 (262)
T ss_dssp TTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHhhccChhHHHHHHHHHHHHhcCCeEEEE
Confidence 99999999999999999999999999999997
No 131
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.46 E-value=1.3e-13 Score=119.20 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=81.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..+++++|++.+++.+.+.+... ........ -...++.+++|+||||||||++|+++++.+.. +++.++
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~---~~~~~~~~-~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-------~~~~v~ 116 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILP---VKFPHLFK-GNRKPTSGILLYGPPGTGKSYLAKAVATEANS-------TFFSVS 116 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHH---HHCGGGGC-SSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC-------EEEEEE
T ss_pred CCHHHhCCHHHHHHHHHHHHHHH---HhCHHHHh-cCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEee
Confidence 45788999999999998854422 11111111 12356778999999999999999999999977 899999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.+++.++|+|++++.++.+|+.|+...|+||||
T Consensus 117 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~i 149 (355)
T 2qp9_X 117 SSDLVSKWMGESEKLVKQLFAMARENKPSIIFI 149 (355)
T ss_dssp HHHHHSCC---CHHHHHHHHHHHHHTSSEEEEE
T ss_pred HHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEE
Confidence 999999999999999999999999999999997
No 132
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.43 E-value=4.1e-13 Score=112.76 Aligned_cols=101 Identities=22% Similarity=0.353 Sum_probs=86.6
Q ss_pred HHhhhhchHHHHHHHHHHHHH-HHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 204 ELSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
.+++++|.+..++.+.+.+.. +........++. ..+.+++|+||||||||++|+++++.+.. +++.++
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~ll~G~~GtGKT~la~~la~~~~~-------~~~~v~ 83 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGI----EPPKGILLYGPPGTGKTLLAKAVATETNA-------TFIRVV 83 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCC----CCCSEEEEESSSSSSHHHHHHHHHHHTTC-------EEEEEE
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC----CCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEe
Confidence 467899999999999886653 344444445544 46778999999999999999999999877 899999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
..++++.|.|+++..++++|+.+....|+||||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 116 (285)
T 3h4m_A 84 GSELVKKFIGEGASLVKDIFKLAKEKAPSIIFI 116 (285)
T ss_dssp GGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred hHHHHHhccchHHHHHHHHHHHHHHcCCeEEEE
Confidence 999999999999999999999999999999986
No 133
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.40 E-value=4.6e-13 Score=119.96 Aligned_cols=101 Identities=20% Similarity=0.333 Sum_probs=87.2
Q ss_pred HHhhhhchHHHHHHHHHHHHH-HHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 204 ELSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
.+++++|.+..++.+++++.. +........++. .++.+++|+||||||||++|+++++.+.. +|+.++
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~----~~~~~vLL~GppGtGKT~lAraia~~~~~-------~fv~vn 270 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV----KPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLIN 270 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC----CCCCEEEEECSTTSSHHHHHHHHHHHCSS-------EEEEEE
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC----CCCCcEEEECcCCCCHHHHHHHHHHHhCC-------CEEEEE
Confidence 467799999999999887654 344444455554 56788999999999999999999999866 999999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.+++.++|.|+++..++.+|+.|..+.|+||||
T Consensus 271 ~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfL 303 (489)
T 3hu3_A 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303 (489)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred chHhhhhhcchhHHHHHHHHHHHHhcCCcEEEe
Confidence 999999999999999999999999999999997
No 134
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.39 E-value=3.3e-13 Score=120.12 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=73.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHH-hhcCCCCCCCeeee
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL-YMVGILPTDRVTEV 281 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~-~~~g~~~~~~~~~~ 281 (316)
..+++++|++.+++.+.+.+... .....+ +.-...++.+++|+||||||||++|+++++.+ .. +++.+
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p---~~~~~~-~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~-------~~~~v 199 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILP---IKFPHL-FTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS-------TFFSI 199 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHH---HHCTTT-TSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS-------EEEEE
T ss_pred CCHHHhcCHHHHHHHHHHHHHHH---hhCHHH-hhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC-------CEEEE
Confidence 45788999999999988754321 111111 11112467899999999999999999999998 44 89999
Q ss_pred cccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 282 QRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+.++++++|+|+++..++++|+.|+...|+||||
T Consensus 200 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~i 233 (444)
T 2zan_A 200 SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFI 233 (444)
T ss_dssp CCC---------CCCTHHHHHHHHHHSCSEEEEE
T ss_pred eHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEE
Confidence 9999999999999999999999999999999997
No 135
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.39 E-value=5.4e-13 Score=112.28 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=61.8
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHh----hcCCcEEEe
Q 021192 239 GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHL----LSEITCLTF 314 (316)
Q Consensus 239 ~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a----~~~~~~~~f 314 (316)
....|.+++++||||||||++|+++|+.+.. +++.++.+++.++|+|+++..++++|+.| +...|+|||
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~-------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~ 104 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGI-------NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLF 104 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTC-------CCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 3457789999999999999999999999977 99999999999999999999999999999 688999998
Q ss_pred c
Q 021192 315 I 315 (316)
Q Consensus 315 ~ 315 (316)
|
T Consensus 105 i 105 (293)
T 3t15_A 105 I 105 (293)
T ss_dssp E
T ss_pred E
Confidence 6
No 136
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.38 E-value=1.3e-13 Score=114.78 Aligned_cols=101 Identities=22% Similarity=0.355 Sum_probs=86.5
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
.+++++|.+..++.+.++...+.........+. ..+.+++|+||||||||++|+++++.+.. +++.++.
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~v~~ 77 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGA----KIPKGVLLVGPPGTGKTLLAKAVAGEAHV-------PFFSMGG 77 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSC----CCCSCCCCBCSSCSSHHHHHHHHHHHHTC-------CCCCCCS
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCC----CCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEech
Confidence 456788899999999887776666555555555 45667999999999999999999999876 8899999
Q ss_pred cccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 284 TDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+++.+.|.|.++..++.+|+.|....|+||||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~i 109 (268)
T 2r62_A 78 SSFIEMFVGLGASRVRDLFETAKKQAPSIIFI 109 (268)
T ss_dssp CTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEE
T ss_pred HHHHHhhcchHHHHHHHHHHHHHhcCCeEEEE
Confidence 99999999999999999999999999999986
No 137
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.38 E-value=3.8e-13 Score=120.26 Aligned_cols=95 Identities=15% Similarity=0.066 Sum_probs=80.1
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
.+++++|.+..++.+..++..+.. ...++.+++|+||||||||++|+++|+.+... -+++.+++
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~-----------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~-----~~~~~~~~ 98 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKS-----------KKMAGRAVLLAGPPGTGKTALALAIAQELGSK-----VPFCPMVG 98 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHT-----------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT-----SCEEEEEG
T ss_pred chhhccCHHHHHHHHHHHHHHHHh-----------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC-----ceEEEEeH
Confidence 457889999999988876653321 12356789999999999999999999998721 28999999
Q ss_pred cccccccccCchHHHHHHHHHh---hcCCcEEEec
Q 021192 284 TDLVGEFVGHTGPKTRRRVGHL---LSEITCLTFI 315 (316)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a---~~~~~~~~f~ 315 (316)
+++.++|+|++++ ++++|+.| +...|+||||
T Consensus 99 ~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~i 132 (456)
T 2c9o_A 99 SEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYE 132 (456)
T ss_dssp GGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEE
T ss_pred HHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEE
Confidence 9999999999998 99999999 8889999997
No 138
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.36 E-value=5.1e-13 Score=119.46 Aligned_cols=102 Identities=25% Similarity=0.402 Sum_probs=85.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..++++++.+..+..++++...+........ +....+.+++++||||||||+++++++..... +++.++
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~----lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-------~~i~i~ 96 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHE----MGARIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS 96 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTT----TSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhh----ccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEe
Confidence 4578899999999999987765433222222 23356678999999999999999999998865 899999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.+++.+.|+|..+++++.+|+.|....|+|+||
T Consensus 97 g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 97 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp GGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred hhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999889999996
No 139
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.35 E-value=2.5e-12 Score=108.62 Aligned_cols=102 Identities=21% Similarity=0.249 Sum_probs=82.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..+++++|.+.+++.+.+.+... ........... .++.+++++||||||||++|+++++.+.. +++.++
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~---~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~-------~~~~i~ 86 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILP---SVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSA-------TFLNIS 86 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHH---HHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTC-------EEEEEE
T ss_pred CCHHHhCChHHHHHHHHHHHHhh---hhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCC-------CeEEee
Confidence 35778999999999888754421 11111111111 35778999999999999999999999876 899999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.+++.+.|.|+++..++.+|+.+....|+||||
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 119 (297)
T 3b9p_A 87 AASLTSKYVGDGEKLVRALFAVARHMQPSIIFI 119 (297)
T ss_dssp STTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHcCCcEEEe
Confidence 999999999999999999999999999999996
No 140
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.34 E-value=2.5e-12 Score=112.78 Aligned_cols=101 Identities=20% Similarity=0.242 Sum_probs=76.4
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
.+++++|.+.+++.+.+++... ........... .++.+++|+||||||||++|+++++.+.. +++.++.
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~---~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~-------~~~~v~~ 181 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILP---SLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNA-------TFFNISA 181 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHH---HHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTC-------EEEEECS
T ss_pred ChHHhCCHHHHHHHHHHHHHHh---ccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcC-------cEEEeeH
Confidence 4788999999999988765422 11112111112 35689999999999999999999999877 9999999
Q ss_pred cccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 284 TDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+++.+.|+|+++..++.+|+.|....|+||||
T Consensus 182 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~i 213 (389)
T 3vfd_A 182 ASLTSKYVGEGEKLVRALFAVARELQPSIIFI 213 (389)
T ss_dssp CCC-------CHHHHHHHHHHHHHSSSEEEEE
T ss_pred HHhhccccchHHHHHHHHHHHHHhcCCeEEEE
Confidence 99999999999999999999999999999997
No 141
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.32 E-value=3.1e-12 Score=110.74 Aligned_cols=102 Identities=18% Similarity=0.257 Sum_probs=83.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..+++++|.+.+++.+.+.+... .......... ...+.+++|+||||||||++|+++++.+.. +++.++
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~---~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~aia~~~~~-------~~~~i~ 149 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWP---MLRPDIFTGL-RGPPKGILLFGPPGTGKTLIGKCIASQSGA-------TFFSIS 149 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHH---HHCTTTSCGG-GSCCSEEEEESSTTSSHHHHHHHHHHHTTC-------EEEEEE
T ss_pred CCHHHhCChHHHHHHHHHHHHHH---hhChHhHhhc-cCCCceEEEECCCCCCHHHHHHHHHHHcCC-------eEEEEe
Confidence 35678999999999988865421 1111111111 246788999999999999999999999876 899999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.+++.++|.|+++..++.+|+.|....|+||||
T Consensus 150 ~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~i 182 (357)
T 3d8b_A 150 ASSLTSKWVGEGEKMVRALFAVARCQQPAVIFI 182 (357)
T ss_dssp GGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred hHHhhccccchHHHHHHHHHHHHHhcCCeEEEE
Confidence 999999999999999999999999999999997
No 142
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.30 E-value=9.2e-12 Score=102.69 Aligned_cols=102 Identities=25% Similarity=0.394 Sum_probs=83.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..++++++.+..+..++++...+.........++ ..+.+++++||||+|||+++++++..+.. +++.++
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~----~~~~g~ll~G~~G~GKTtl~~~i~~~~~~-------~~i~~~ 81 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGA----RIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS 81 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTC----CCCSEEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCC----CCCCeEEEECCCCCCHHHHHHHHHHHhCC-------CEEEee
Confidence 3567888999999998887665544444445554 34567999999999999999999998764 789999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
..++...+.++.++.++.+|+.+....|+++|+
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~ 114 (254)
T 1ixz_A 82 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 114 (254)
T ss_dssp HHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEe
Confidence 999999999999999999999998888999885
No 143
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.24 E-value=3e-11 Score=101.00 Aligned_cols=102 Identities=25% Similarity=0.394 Sum_probs=83.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..++++++.+..++.++++...+.........++ ..+.+++++||||+|||+++++++..+.. +++.++
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~----~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-------~~i~~~ 105 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGA----RIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS 105 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTC----CCCCEEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCC----CCCCeEEEECCCcChHHHHHHHHHHHcCC-------CEEEec
Confidence 4567888999999998887766544444445554 34556999999999999999999998764 789999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
..++...+.++..++++.+|+.+....|+++|+
T Consensus 106 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~i 138 (278)
T 1iy2_A 106 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 138 (278)
T ss_dssp HHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEeh
Confidence 999989899999999999999998888999885
No 144
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.22 E-value=1.1e-12 Score=124.79 Aligned_cols=101 Identities=21% Similarity=0.367 Sum_probs=80.0
Q ss_pred HhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccc
Q 021192 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (316)
Q Consensus 205 l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~ 284 (316)
++++.+++.+++.+.+.+.. ..............++.+++|+||||||||++|++++..+.. +++.++.+
T Consensus 476 ~~di~gl~~vk~~l~~~v~~---~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~-------~~i~v~~~ 545 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQY---PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKGP 545 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTS---SSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC-------CCCCCCCS
T ss_pred ccccccchhhhhhHHHHHHh---hhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC-------CEEEEech
Confidence 45667777788777664321 111112222333356788999999999999999999999976 89999999
Q ss_pred ccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 285 DLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 285 ~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
++.++|+|+++..++.+|+.|+...||||||
T Consensus 546 ~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~i 576 (806)
T 1ypw_A 546 ELLTMWFGESEANVREIFDKARQAAPCVLFF 576 (806)
T ss_dssp SSTTCCTTTSSHHHHHHHHHHHHHCSBCCCC
T ss_pred HhhhhhcCccHHHHHHHHHHHHhcCCeEEEE
Confidence 9999999999999999999999999999986
No 145
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.16 E-value=1.7e-11 Score=116.54 Aligned_cols=103 Identities=19% Similarity=0.318 Sum_probs=85.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
..+++++|.+..++.+++++.. ..........+...++.+++|+||||||||++|++++..+.. +++.++
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~---~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~-------~~i~v~ 270 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVEL---PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLIN 270 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHH---HHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC-------EEEEEE
T ss_pred CCHHHhCChHHHHHHHHHHHHH---HhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-------cEEEEE
Confidence 3578899999999998886653 222223333334467889999999999999999999998776 899999
Q ss_pred ccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 283 RTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
..++.+++.|+.+.+++.+|+.+....|+|+||
T Consensus 271 ~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~i 303 (806)
T 1ypw_A 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303 (806)
T ss_dssp HHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred chHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEe
Confidence 999999999999999999999999999999996
No 146
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.12 E-value=1.1e-10 Score=101.40 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=75.8
Q ss_pred HHHHHhh-hhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCee
Q 021192 201 LENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (316)
Q Consensus 201 ~~~~l~~-i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~ 279 (316)
+...+++ ++|++.+++.+...+......... .........++.+++|+||||||||++|+++++.+.. +++
T Consensus 9 l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~-~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~-------~~~ 80 (363)
T 3hws_A 9 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRN-GDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV-------PFT 80 (363)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHT-TSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC-------CEE
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHHhhhcc-ccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------CEE
Confidence 3344444 588888888887755422221111 1111111236778999999999999999999999976 999
Q ss_pred eecccccccc-cccCc-hHHHHHHHHHh----hcCCcEEEec
Q 021192 280 EVQRTDLVGE-FVGHT-GPKTRRRVGHL----LSEITCLTFI 315 (316)
Q Consensus 280 ~~~~~~~~~~-~~g~~-~~~~~~~~~~a----~~~~~~~~f~ 315 (316)
.++.+++... |+|++ ...++++|+.+ ....++||||
T Consensus 81 ~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~l 122 (363)
T 3hws_A 81 MADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYI 122 (363)
T ss_dssp EEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEE
T ss_pred EechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEE
Confidence 9999988754 89987 67788898887 3346788886
No 147
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.05 E-value=1.3e-09 Score=95.64 Aligned_cols=98 Identities=24% Similarity=0.342 Sum_probs=71.7
Q ss_pred HHHHHHh-hhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCC-CCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCC
Q 021192 200 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA-RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (316)
Q Consensus 200 ~~~~~l~-~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~ 277 (316)
++...++ .++|++.+++.+...+. ...++......... .++.+++++||||+|||++|+++|+.+.. +
T Consensus 8 ~i~~~Ld~~IvGqe~ak~~l~~av~---~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~-------~ 77 (444)
T 1g41_A 8 EIVSELDQHIIGQADAKRAVAIALR---NRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------P 77 (444)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHH---HHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC-------C
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH---HHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC-------C
Confidence 3444554 57899999988866432 22233333322222 25688999999999999999999999988 9
Q ss_pred eeeeccccccc-ccccC-chHHHHHHHHHhhc
Q 021192 278 VTEVQRTDLVG-EFVGH-TGPKTRRRVGHLLS 307 (316)
Q Consensus 278 ~~~~~~~~~~~-~~~g~-~~~~~~~~~~~a~~ 307 (316)
++.++.+++.+ +|+|+ +++.++++|+.|..
T Consensus 78 ~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~ 109 (444)
T 1g41_A 78 FIKVEATKFTEVGYVGKEVDSIIRDLTDSAMK 109 (444)
T ss_dssp EEEEEGGGGC----CCCCTHHHHHHHHHHHHH
T ss_pred ceeecchhhcccceeeccHHHHHHHHHHHHHh
Confidence 99999999998 59996 79999999998853
No 148
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.85 E-value=2.8e-09 Score=95.42 Aligned_cols=93 Identities=17% Similarity=0.283 Sum_probs=63.0
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCC---CCCCeee
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRVTE 280 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~---~~~~~~~ 280 (316)
.++.++|.+...+.+.+++. .....+++|+||||+|||++|+++++.+...+.. ...+++.
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~----------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLS----------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHH----------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred CCCCccCcHHHHHHHHHHHh----------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 35667888777766655432 1345678999999999999999999998542211 1336777
Q ss_pred ecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 281 VQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
++.+ ++|.|+.+.+++.+|+.+....++||||
T Consensus 242 l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfi 273 (468)
T 3pxg_A 242 LDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFI 273 (468)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEE
T ss_pred eeCC---ccccchHHHHHHHHHHHHHhcCCeEEEE
Confidence 7766 8889999999999999999989999997
No 149
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.83 E-value=6.6e-09 Score=86.39 Aligned_cols=65 Identities=12% Similarity=0.197 Sum_probs=53.5
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCch----HHHHHHHHHhhcCCcEEEec
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG----PKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~a~~~~~~~~f~ 315 (316)
..+.+++|+||||||||++|+++++.+.. +++.++.++ .++|.++ ..++++|+.+....+.||||
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~-------~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~i 130 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNF-------PFIKICSPD---KMIGFSETAKCQAMKKIFDDAYKSQLSCVVV 130 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTC-------SEEEEECGG---GCTTCCHHHHHHHHHHHHHHHHTSSEEEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEeCHH---HhcCCchHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 46678999999999999999999999766 888887654 3445443 67899999998888999986
No 150
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.78 E-value=1.3e-08 Score=86.08 Aligned_cols=106 Identities=25% Similarity=0.357 Sum_probs=70.0
Q ss_pred HHHHHHh-hhhchHHHHHHHHHHHHHHHhHHHHHHcCCcc-CCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCC
Q 021192 200 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKV-GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (316)
Q Consensus 200 ~~~~~l~-~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~ 277 (316)
++...++ .++|.+..++.+...+.... .+..+.... ....+.+++|+||||||||++|+++++.+.. +
T Consensus 8 ~l~~~l~~~i~G~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-------~ 77 (310)
T 1ofh_A 8 EIVSELDQHIIGQADAKRAVAIALRNRW---RRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------P 77 (310)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHHH---HTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC-------C
T ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHHH---hhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC-------C
Confidence 3344443 37888888888776443210 000000000 0135678999999999999999999999866 8
Q ss_pred eeeeccccccc-ccccCc-hHHHHHHHHHhhc-----CCcEEEec
Q 021192 278 VTEVQRTDLVG-EFVGHT-GPKTRRRVGHLLS-----EITCLTFI 315 (316)
Q Consensus 278 ~~~~~~~~~~~-~~~g~~-~~~~~~~~~~a~~-----~~~~~~f~ 315 (316)
++.++.+++.. .|+|.. +..++++++.+.+ ..++||||
T Consensus 78 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 122 (310)
T 1ofh_A 78 FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFI 122 (310)
T ss_dssp EEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEE
T ss_pred EEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEE
Confidence 99999988876 677765 4668888875521 23667775
No 151
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.77 E-value=6.4e-09 Score=98.82 Aligned_cols=93 Identities=18% Similarity=0.297 Sum_probs=63.1
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCC---CCCCCeee
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTE 280 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~---~~~~~~~~ 280 (316)
.++.++|.+...+.+.+++. .....+++|+||||||||++|+++++.+...+. +....++.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~----------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLS----------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHH----------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred CCCCccCchHHHHHHHHHHh----------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 45678888877777655432 235568999999999999999999999854211 11225555
Q ss_pred ecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 281 VQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
++. -.+|.|+.+.+++++|+.+....++||||
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfi 273 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFI 273 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEE
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcCCEEEEE
Confidence 555 56789999999999999999999999997
No 152
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.77 E-value=2.4e-08 Score=86.98 Aligned_cols=110 Identities=21% Similarity=0.256 Sum_probs=64.9
Q ss_pred HHHHHHHhh-hhchHHHHHHHHHHHHHHHhHHH-------------HHHcC-CccCCCCCCceeeecCCCCcHHHHHHHH
Q 021192 199 DELENELSN-IVGLHELKIQLRKWAKGMLLDER-------------RKALG-LKVGARRPPHMAFLGNPGTGKTMVARIL 263 (316)
Q Consensus 199 ~~~~~~l~~-i~~~~~~k~~l~~~~~~l~~~~~-------------~~~~~-~~~~~~~~~~~l~~GppGtGKT~la~~l 263 (316)
.++...+++ ++|++.+++.+...+.......+ .++.+ .......+.+++|+||||||||++|+++
T Consensus 13 ~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~l 92 (376)
T 1um8_A 13 KELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTL 92 (376)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHH
Confidence 344455544 68888888888765421100000 00000 0001235678999999999999999999
Q ss_pred HHHHhhcCCCCCCCeeeecccccc-cccccCc-hHHHHHHHHHhhc----CCcEEEec
Q 021192 264 GRLLYMVGILPTDRVTEVQRTDLV-GEFVGHT-GPKTRRRVGHLLS----EITCLTFI 315 (316)
Q Consensus 264 a~~~~~~g~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~a~~----~~~~~~f~ 315 (316)
++.+.. +++.++...+. ..|+|+. ...++++|..+.+ ..+.||||
T Consensus 93 a~~l~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~i 143 (376)
T 1um8_A 93 AKHLDI-------PIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFI 143 (376)
T ss_dssp HHHTTC-------CEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEE
T ss_pred HHHhCC-------CEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEE
Confidence 999865 89999888765 5677776 5557777766532 24566664
No 153
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.69 E-value=2.6e-08 Score=77.90 Aligned_cols=96 Identities=21% Similarity=0.300 Sum_probs=64.4
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCC---CCCCeee
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRVTE 280 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~---~~~~~~~ 280 (316)
.++.+++.+...+.+.+... ...+.+++++||||+|||++++.+++.+...... ...+++.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred cccccccchHHHHHHHHHHh----------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 34556666665555444221 1346779999999999999999999998652111 1235667
Q ss_pred ecccccc--cccccCchHHHHHHHHHh-hcCCcEEEec
Q 021192 281 VQRTDLV--GEFVGHTGPKTRRRVGHL-LSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~--~~~~g~~~~~~~~~~~~a-~~~~~~~~f~ 315 (316)
++..++. ..+.|.....++++++.+ ..+.++||||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 121 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI 121 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 7766665 456677778888998866 3466877775
No 154
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.67 E-value=1.9e-08 Score=78.31 Aligned_cols=74 Identities=18% Similarity=0.327 Sum_probs=52.9
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCC---CCCCCeeeecccccc--cccccCchHHHHHHHHHhhcC-CcEEEec
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTEVQRTDLV--GEFVGHTGPKTRRRVGHLLSE-ITCLTFI 315 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~---~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~a~~~-~~~~~f~ 315 (316)
...+++++||||+|||++++.+++.+..... ....+++.++..++. ..+.|..+..++++++.+... .+.||||
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 121 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFI 121 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEE
Confidence 4567999999999999999999998854111 112256666666554 335666777888888887654 6777775
No 155
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.66 E-value=2.8e-08 Score=86.32 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=45.6
Q ss_pred HhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccc
Q 021192 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (316)
Q Consensus 205 l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~ 284 (316)
++++++.+..++.+..+...+.. ...++..++|+||||+|||++|+++++.+... .+++.++..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~-----------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-----~~~~~~~~~ 106 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIRE-----------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD-----TPFTAIAGS 106 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHT-----------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS-----CCEEEEEGG
T ss_pred hhhccChHHHHHHHHHHHHHHHc-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHhccc-----CCcccccch
Confidence 66788888888776655443321 11235789999999999999999999998631 155555544
Q ss_pred c
Q 021192 285 D 285 (316)
Q Consensus 285 ~ 285 (316)
.
T Consensus 107 ~ 107 (368)
T 3uk6_A 107 E 107 (368)
T ss_dssp G
T ss_pred h
Confidence 4
No 156
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.66 E-value=4.7e-08 Score=89.03 Aligned_cols=92 Identities=16% Similarity=0.263 Sum_probs=59.2
Q ss_pred hhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccc
Q 021192 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (316)
Q Consensus 206 ~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~ 285 (316)
.++++++.++..+.+..... ...... ....++|+||||||||++|++++..+.. ++..++...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~-------~~~~~~---~g~~vll~Gp~GtGKTtlar~ia~~l~~-------~~~~i~~~~ 143 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQ-------KLTKSL---KGPILCLAGPPGVGKTSLAKSIAKSLGR-------KFVRISLGG 143 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHH-------HHSSSC---CSCEEEEESSSSSSHHHHHHHHHHHHTC-------EEEEECCCC
T ss_pred HHhccHHHHHHHHHHHHHHH-------HhcccC---CCCEEEEECCCCCCHHHHHHHHHHhcCC-------CeEEEEecc
Confidence 45788888888776533211 112221 4668999999999999999999999966 677776544
Q ss_pred ccc---------ccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 286 LVG---------EFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 286 ~~~---------~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+.. .|+|.....+++.|..|....| |+||
T Consensus 144 ~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~l 181 (543)
T 3m6a_A 144 VRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLL 181 (543)
T ss_dssp --------------------CHHHHHHTTCSSSE-EEEE
T ss_pred cchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEE
Confidence 332 6888888899999999987778 5554
No 157
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.65 E-value=5.2e-08 Score=93.67 Aligned_cols=96 Identities=19% Similarity=0.305 Sum_probs=63.8
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcC---CCCCCCeee
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE 280 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g---~~~~~~~~~ 280 (316)
.++.+++.+.....+.++.. .....+++|+||||+|||++++++++.+.... .+...+++.
T Consensus 168 ~ld~viGr~~~i~~l~~~l~----------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILL----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHH----------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred CCcccCCcHHHHHHHHHHHh----------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 45566777655555444321 13456799999999999999999999985411 112337888
Q ss_pred ecccccc--cccccCchHHHHHHHHHhhcC-CcEEEec
Q 021192 281 VQRTDLV--GEFVGHTGPKTRRRVGHLLSE-ITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~--~~~~g~~~~~~~~~~~~a~~~-~~~~~f~ 315 (316)
++.++++ .+|.|+.+.+++++|+.+... .++||||
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~I 269 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFI 269 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 8888887 678999999999999999875 7899987
No 158
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.58 E-value=2.3e-08 Score=90.67 Aligned_cols=104 Identities=18% Similarity=0.282 Sum_probs=65.5
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHH--HcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeee
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRK--ALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~ 281 (316)
.++++++.+...+.+.+++.......... ..+.. ....+..++|+||||+|||++|+++++.+.. +++++
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~-~~~~~~~lLL~GppGtGKTtla~~la~~l~~-------~~i~i 108 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKD-GSGVFRAAMLYGPPGIGKTTAAHLVAQELGY-------DILEQ 108 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTT-STTSCSEEEEECSTTSSHHHHHHHHHHHTTC-------EEEEE
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCcc-CCCCCcEEEEECCCCCCHHHHHHHHHHHcCC-------CEEEE
Confidence 46778888888888888765432221110 11110 0124578999999999999999999999965 88999
Q ss_pred cccccccccccCchH-------HHHHHHHHh-----hcCCcEEEec
Q 021192 282 QRTDLVGEFVGHTGP-------KTRRRVGHL-----LSEITCLTFI 315 (316)
Q Consensus 282 ~~~~~~~~~~g~~~~-------~~~~~~~~a-----~~~~~~~~f~ 315 (316)
++++..+.+..+... .++.+|+.+ ..+.++||||
T Consensus 109 n~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliI 154 (516)
T 1sxj_A 109 NASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIM 154 (516)
T ss_dssp CTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEE
T ss_pred eCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEE
Confidence 988766544322111 123344443 2356778776
No 159
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.58 E-value=1.1e-07 Score=84.37 Aligned_cols=83 Identities=20% Similarity=0.312 Sum_probs=60.0
Q ss_pred HHHhhhhchHHHH---HHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCee
Q 021192 203 NELSNIVGLHELK---IQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (316)
Q Consensus 203 ~~l~~i~~~~~~k---~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~ 279 (316)
..+++++|.+.+. ..+...+. . ....+++|+||||||||++|+++++.+.. +++
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~---~-------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~-------~f~ 79 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIE---A-------------GHLHSMILWGPPGTGKTTLAEVIARYANA-------DVE 79 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHH---H-------------TCCCEEEEECSTTSSHHHHHHHHHHHTTC-------EEE
T ss_pred CCHHHhCCcHHHHhchHHHHHHHH---c-------------CCCcEEEEECCCCCcHHHHHHHHHHHhCC-------CeE
Confidence 3456778877776 44443322 1 23367999999999999999999999876 788
Q ss_pred eecccccccccccCchHHHHHHHHHhhc----CCcEEEec
Q 021192 280 EVQRTDLVGEFVGHTGPKTRRRVGHLLS----EITCLTFI 315 (316)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~~~~~~~a~~----~~~~~~f~ 315 (316)
.++.. +.+...++++|+.+.. +.+.||||
T Consensus 80 ~l~a~-------~~~~~~ir~~~~~a~~~~~~~~~~iLfI 112 (447)
T 3pvs_A 80 RISAV-------TSGVKEIREAIERARQNRNAGRRTILFV 112 (447)
T ss_dssp EEETT-------TCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEec-------cCCHHHHHHHHHHHHHhhhcCCCcEEEE
Confidence 88764 3446678888888763 46788886
No 160
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.54 E-value=2e-07 Score=88.71 Aligned_cols=96 Identities=16% Similarity=0.221 Sum_probs=68.4
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCC---CCCCeee
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRVTE 280 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~---~~~~~~~ 280 (316)
.++.++|.+...+.+.+... .....+++|+||||+|||+++++++..+...++. ....++.
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~----------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLC----------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred CCCCccCCHHHHHHHHHHHh----------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 34566776665555444221 1356789999999999999999999988653211 1235666
Q ss_pred ecccccc--cccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 281 VQRTDLV--GEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 281 ~~~~~~~--~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
++...++ .+|.|+.+.+++++|+.+....++||||
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~I 284 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFI 284 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEE
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEE
Confidence 6666666 4688999999999999999888999997
No 161
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.52 E-value=1.7e-07 Score=94.15 Aligned_cols=115 Identities=12% Similarity=0.068 Sum_probs=71.2
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHHHHHhHH-----------HHHH------cCCc-----c-CCCCCCc--eeeecCCC
Q 021192 199 DELENELSNIVGLHELKIQLRKWAKGMLLDE-----------RRKA------LGLK-----V-GARRPPH--MAFLGNPG 253 (316)
Q Consensus 199 ~~~~~~l~~i~~~~~~k~~l~~~~~~l~~~~-----------~~~~------~~~~-----~-~~~~~~~--~l~~GppG 253 (316)
.+....|.++.++.+.|+...+.+....... .++. .|.. . ....|++ ++++||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 4455778899999999888876544332111 1111 2221 0 0123445 89999999
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCeeeecc--cccc--------cccccC----chHHHHHHHHHhhcCCcEEEec
Q 021192 254 TGKTMVARILGRLLYMVGILPTDRVTEVQR--TDLV--------GEFVGH----TGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 254 tGKT~la~~la~~~~~~g~~~~~~~~~~~~--~~~~--------~~~~g~----~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
||||++|++++.+....|- .+.|+.+.. .+++ ++|+++ +|+.++.+|..|+..+||+||+
T Consensus 1093 ~GKT~la~~~~~~~~~~g~--~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~ 1166 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGK--TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVV 1166 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTC--CEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEE
T ss_pred CChHHHHHHHHHHhhhcCC--ceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999998876321 112555554 3444 788899 8999999999999999999996
No 162
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.51 E-value=3.6e-07 Score=78.34 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=61.8
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
.+++++|.+..++.+..++..... ...++.+++++||||||||++|+++++.+.. +++.++.
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~-----------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~-------~~~~~~~ 88 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKK-----------RNECLDHILFSGPAGLGKTTLANIISYEMSA-------NIKTTAA 88 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH-----------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTC-------CEEEEEG
T ss_pred CHHHhCChHHHHHHHHHHHHHHHh-----------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-------CeEEecc
Confidence 467889999988888776553321 1235667999999999999999999999876 8888887
Q ss_pred cccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 284 TDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
..+- ....+++.+... ..+.+|||
T Consensus 89 ~~~~------~~~~~~~~~~~~--~~~~vl~l 112 (338)
T 3pfi_A 89 PMIE------KSGDLAAILTNL--SEGDILFI 112 (338)
T ss_dssp GGCC------SHHHHHHHHHTC--CTTCEEEE
T ss_pred hhcc------chhHHHHHHHhc--cCCCEEEE
Confidence 6542 344555666553 45567775
No 163
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.50 E-value=8.5e-07 Score=74.61 Aligned_cols=75 Identities=9% Similarity=-0.005 Sum_probs=52.7
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhcC---CCCCCCeeeecccccc----------cccc------cCchHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTEVQRTDLV----------GEFV------GHTGPKTRRR 301 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~g---~~~~~~~~~~~~~~~~----------~~~~------g~~~~~~~~~ 301 (316)
..+.+++++||||||||++++.+++++.... -++.=.++.+++..+. .++. +++...+++.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 5778899999999999999999999996421 1111146677754432 2333 4467789999
Q ss_pred HHHh--hcCCcEEEec
Q 021192 302 VGHL--LSEITCLTFI 315 (316)
Q Consensus 302 ~~~a--~~~~~~~~f~ 315 (316)
|+.. ....++|||+
T Consensus 123 f~~~~~~~~~~~ii~l 138 (318)
T 3te6_A 123 ITNVPKAKKRKTLILI 138 (318)
T ss_dssp HHHSCGGGSCEEEEEE
T ss_pred HHHhhhccCCceEEEE
Confidence 9986 4567888875
No 164
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.46 E-value=2.6e-07 Score=68.92 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=40.8
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhhcC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSE 308 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~ 308 (316)
...+++++||||||||++|++++......+ .+++ ++.+.+... ......|+.|.++
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~----~~~v-~~~~~~~~~------~~~~~~~~~a~~g 78 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQ----GEFV-YRELTPDNA------PQLNDFIALAQGG 78 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTT----SCCE-EEECCTTTS------SCHHHHHHHHTTS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccC----CCEE-EECCCCCcc------hhhhcHHHHcCCc
Confidence 556799999999999999999988764322 2677 887765544 3455677777654
No 165
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.43 E-value=1.2e-07 Score=70.56 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=39.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhhcC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSE 308 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~ 308 (316)
...+++++||||||||++|++++.... +++.++.+++...+ .+.+|+.|.++
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~~~~~-------~~~~~~~a~~~ 77 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEYLIDM-------PMELLQKAEGG 77 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTHHHHC-------HHHHHHHTTTS
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhCChHh-------hhhHHHhCCCC
Confidence 446799999999999999999977543 78888887765544 46677777543
No 166
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.38 E-value=8e-07 Score=75.67 Aligned_cols=83 Identities=19% Similarity=0.142 Sum_probs=58.2
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
.++++++.+...+.+..++. ....+..++++||||+|||++++++++.+.. +++++++
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~---------------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-------~~~~i~~ 81 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITS---------------KGKIPHIILHSPSPGTGKTTVAKALCHDVNA-------DMMFVNG 81 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHH---------------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-------EEEEEET
T ss_pred CHHHHhCcHHHHHHHHHHHH---------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-------CEEEEcc
Confidence 46778888888777766544 1234455677888999999999999999876 8888887
Q ss_pred cccccccccCchHHHHHHHHHhhc-----CCcEEEec
Q 021192 284 TDLVGEFVGHTGPKTRRRVGHLLS-----EITCLTFI 315 (316)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~~-----~~~~~~f~ 315 (316)
++. ....+++.+..... +.+.||||
T Consensus 82 ~~~-------~~~~i~~~~~~~~~~~~~~~~~~vlii 111 (324)
T 3u61_B 82 SDC-------KIDFVRGPLTNFASAASFDGRQKVIVI 111 (324)
T ss_dssp TTC-------CHHHHHTHHHHHHHBCCCSSCEEEEEE
T ss_pred ccc-------CHHHHHHHHHHHHhhcccCCCCeEEEE
Confidence 652 24556665555433 25677775
No 167
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.35 E-value=1.5e-06 Score=73.43 Aligned_cols=76 Identities=29% Similarity=0.399 Sum_probs=48.8
Q ss_pred HHHHHH-hhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCe
Q 021192 200 ELENEL-SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 278 (316)
Q Consensus 200 ~~~~~l-~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~ 278 (316)
.+...+ ..++|.....+.+...+... ..++.....+...++|+||||||||++|+++++.+...+ .++
T Consensus 10 ~l~~~l~~~i~G~~~~~~~l~~~i~~~-------~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~----~~~ 78 (311)
T 4fcw_A 10 RLEEELHKRVVGQDEAIRAVADAIRRA-------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE----EAM 78 (311)
T ss_dssp THHHHHHTTCCSCHHHHHHHHHHHHHH-------HHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG----GGE
T ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHHH-------hcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC----cce
Confidence 344444 34668888877776644322 223322333445799999999999999999999985421 257
Q ss_pred eeeccccc
Q 021192 279 TEVQRTDL 286 (316)
Q Consensus 279 ~~~~~~~~ 286 (316)
+.++.+.+
T Consensus 79 ~~~~~~~~ 86 (311)
T 4fcw_A 79 IRIDMTEY 86 (311)
T ss_dssp EEEEGGGC
T ss_pred EEeecccc
Confidence 77776544
No 168
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.34 E-value=9.7e-07 Score=83.88 Aligned_cols=66 Identities=15% Similarity=0.261 Sum_probs=47.7
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+..+++|+||||||||.+|+++++.+... ..+++.++.+++.+.+.... ..+++..+...++||||
T Consensus 520 p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~----~~~~i~i~~s~~~~~~~~~~----~~l~~~~~~~~~~vl~l 585 (758)
T 3pxi_A 520 PIGSFIFLGPTGVGKTELARALAESIFGD----EESMIRIDMSEYMEKHSTSG----GQLTEKVRRKPYSVVLL 585 (758)
T ss_dssp CSEEEEEESCTTSSHHHHHHHHHHHHHSC----TTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCC----CcceEEEechhccccccccc----chhhHHHHhCCCeEEEE
Confidence 33379999999999999999999998542 23899999999988876652 22333334445567775
No 169
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.30 E-value=1.8e-06 Score=73.46 Aligned_cols=87 Identities=22% Similarity=0.321 Sum_probs=56.5
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
.++++++....+..+...+...... ...+.+++++||||+|||++|+++++.+.. +++.++.
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~-----------~~~~~~vll~G~~GtGKT~la~~i~~~~~~-------~~~~~~~ 71 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKAR-----------KEPLEHLLLFGPPGLGKTTLAHVIAHELGV-------NLRVTSG 71 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHH-----------CSCCCCCEEECCTTCCCHHHHHHHHHHHTC-------CEEEECT
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHcc-----------CCCCCcEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEec
Confidence 3566788887777776654432110 134567999999999999999999998865 7777776
Q ss_pred cccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 284 TDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+.+. ....+...|..+. ..+.+|||
T Consensus 72 ~~~~------~~~~l~~~l~~~~-~~~~~l~l 96 (324)
T 1hqc_A 72 PAIE------KPGDLAAILANSL-EEGDILFI 96 (324)
T ss_dssp TTCC------SHHHHHHHHTTTC-CTTCEEEE
T ss_pred cccC------ChHHHHHHHHHhc-cCCCEEEE
Confidence 5442 2334444444422 34556665
No 170
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.28 E-value=1.1e-06 Score=83.49 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=38.3
Q ss_pred HHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccccc
Q 021192 232 KALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG 288 (316)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~ 288 (316)
...|+.....+..+++|+||||+|||++|+++++.+.. +++.++.+++..
T Consensus 477 ~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~-------~~~~i~~s~~~~ 526 (758)
T 1r6b_X 477 ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-------ELLRFDMSEYME 526 (758)
T ss_dssp HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC-------EEEEEEGGGCSS
T ss_pred HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC-------CEEEEechhhcc
Confidence 34455444445557999999999999999999999954 788888776544
No 171
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.24 E-value=4.6e-07 Score=77.18 Aligned_cols=69 Identities=22% Similarity=0.218 Sum_probs=46.7
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
.+..++++||||+|||++++++++.+...+ .+++.++..++...+.+.......+.|...... +.||||
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vL~i 104 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRG----YRVIYSSADDFAQAMVEHLKKGTINEFRNMYKS-VDLLLL 104 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTT----CCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHT-CSEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCC----CEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcC-CCEEEE
Confidence 456799999999999999999999985432 278888887776665554433333334443333 555554
No 172
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.21 E-value=5.5e-06 Score=70.26 Aligned_cols=88 Identities=30% Similarity=0.337 Sum_probs=56.0
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
.++++++.+...+.+...+. .....+++|+||||+|||++++.+++.+...+. ...+++++.
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~--~~~~~~~~~ 80 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAK----------------DGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY--ADGVLELNA 80 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHH----------------SCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH--HHHEEEECT
T ss_pred CHHHHHCCHHHHHHHHHHHH----------------cCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc--cCCEEEecC
Confidence 35567777777777766433 123345999999999999999999998743110 014566665
Q ss_pred cccccccccCchHHHHHHHHHhh-------cCCcEEEec
Q 021192 284 TDLVGEFVGHTGPKTRRRVGHLL-------SEITCLTFI 315 (316)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~-------~~~~~~~f~ 315 (316)
++.. +...++++++... .+.+.||||
T Consensus 81 ~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viii 113 (323)
T 1sxj_B 81 SDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVIL 113 (323)
T ss_dssp TSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEE
T ss_pred cccc------ChHHHHHHHHHHHhccccCCCCCceEEEE
Confidence 4421 2455677776654 444777776
No 173
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.16 E-value=5.5e-06 Score=79.72 Aligned_cols=43 Identities=26% Similarity=0.426 Sum_probs=33.5
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccccc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG 288 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~ 288 (316)
+..+++|+||||||||++|++++..+...+ .+++.++.+++..
T Consensus 587 p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~----~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 587 PIGSFLFLGPTGVGKTELAKTLAATLFDTE----EAMIRIDMTEYME 629 (854)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHHHSSG----GGEEEECTTTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCCC----CcEEEEechhccc
Confidence 445899999999999999999999995422 2788888765543
No 174
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.12 E-value=1.2e-05 Score=63.98 Aligned_cols=49 Identities=39% Similarity=0.647 Sum_probs=36.0
Q ss_pred HhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 205 l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+.++++.....+.+.+.+. .....+++++||||+|||++++.+++.+..
T Consensus 16 ~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVE----------------RKNIPHLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHH----------------TTCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred HHHHcCcHHHHHHHHHHHh----------------CCCCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4567777777776665443 113345999999999999999999998754
No 175
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.09 E-value=1.2e-06 Score=77.78 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=46.0
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
+..++|+||||+|||++++++++.+... .+..+++.++..++..++.+.......+.|.......+.||||
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~--~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~I 200 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN--EPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLI 200 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHH--CCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHh--CCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEE
Confidence 5679999999999999999999988542 1122677788777665554433222223344444435666665
No 176
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.06 E-value=1.2e-05 Score=69.87 Aligned_cols=73 Identities=26% Similarity=0.291 Sum_probs=45.6
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhc----CCCCCCCeeeeccccccc------c----------cccCchHH-HH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMV----GILPTDRVTEVQRTDLVG------E----------FVGHTGPK-TR 299 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~----g~~~~~~~~~~~~~~~~~------~----------~~g~~~~~-~~ 299 (316)
..+..++++||||+|||++++.+++.+... |. ...++.++...... . ..|.+... ..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 119 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGV--LVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYE 119 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTC--CEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCC--CeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 466789999999999999999999988431 00 11566776543211 1 22444444 34
Q ss_pred HHHHHhh-cCCcEEEec
Q 021192 300 RRVGHLL-SEITCLTFI 315 (316)
Q Consensus 300 ~~~~~a~-~~~~~~~f~ 315 (316)
.+++.+. .+.++||||
T Consensus 120 ~l~~~l~~~~~~~vlil 136 (387)
T 2v1u_A 120 RLVKRLSRLRGIYIIVL 136 (387)
T ss_dssp HHHHHHTTSCSEEEEEE
T ss_pred HHHHHHhccCCeEEEEE
Confidence 4444443 345888886
No 177
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.06 E-value=3.5e-06 Score=71.34 Aligned_cols=65 Identities=34% Similarity=0.538 Sum_probs=42.9
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
.++++++.+...+.+...+. .....+++|+||||+|||++|+++++.+...+. ..++++++.
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~--~~~~~~~~~ 76 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVE----------------RKNIPHLLFSGPPGTGKTATAIALARDLFGENW--RDNFIEMNA 76 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTT----------------TTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH--HHHCEEEET
T ss_pred CHHHHhCCHHHHHHHHHHHh----------------CCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc--cCCeEEEeC
Confidence 35567777777776655322 123345999999999999999999998743110 114666666
Q ss_pred ccc
Q 021192 284 TDL 286 (316)
Q Consensus 284 ~~~ 286 (316)
++.
T Consensus 77 ~~~ 79 (319)
T 2chq_A 77 SDE 79 (319)
T ss_dssp TST
T ss_pred ccc
Confidence 553
No 178
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.06 E-value=1.5e-05 Score=69.24 Aligned_cols=68 Identities=18% Similarity=0.085 Sum_probs=44.0
Q ss_pred hhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcC---C-CCCCCeeee
Q 021192 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---I-LPTDRVTEV 281 (316)
Q Consensus 206 ~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g---~-~~~~~~~~~ 281 (316)
+.+++.+...+.+...+..... ...+..++++||||+|||++++++++.+.... . .+..+++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~------------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i 87 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK------------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYV 87 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT------------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHc------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEE
Confidence 5567777776666654432211 23566899999999999999999999874320 0 001267777
Q ss_pred cccc
Q 021192 282 QRTD 285 (316)
Q Consensus 282 ~~~~ 285 (316)
+..+
T Consensus 88 ~~~~ 91 (384)
T 2qby_B 88 NCRE 91 (384)
T ss_dssp EHHH
T ss_pred ECcc
Confidence 6543
No 179
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.05 E-value=2.4e-05 Score=66.95 Aligned_cols=50 Identities=36% Similarity=0.633 Sum_probs=36.4
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.++++++...+.+.+...+. .....+++|+||||+|||++++++++.+..
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~----------------~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVD----------------EGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHH----------------TTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHhcCcHHHHHHHHHHHh----------------cCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 35666777766666655333 123345999999999999999999999754
No 180
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.03 E-value=2.5e-05 Score=66.69 Aligned_cols=28 Identities=36% Similarity=0.516 Sum_probs=25.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+.+++|+||||+|||+++++++..+..
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 5578999999999999999999999865
No 181
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.02 E-value=9.6e-07 Score=79.12 Aligned_cols=86 Identities=16% Similarity=0.130 Sum_probs=46.6
Q ss_pred hhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeee----
Q 021192 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV---- 281 (316)
Q Consensus 206 ~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~---- 281 (316)
..++|.+.+++.+..... ...+++++||||||||++|++++..+...+ ++..+
T Consensus 22 ~~ivGq~~~i~~l~~al~------------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~-----~f~~~~~~~ 78 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL------------------SGESVFLLGPPGIAKSLIARRLKFAFQNAR-----AFEYLMTRF 78 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH------------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCC-----EEEEECCTT
T ss_pred hhhHHHHHHHHHHHHHHh------------------cCCeeEeecCchHHHHHHHHHHHHHHhhhh-----HHHHHHHhc
Confidence 446677777665543221 224799999999999999999998774311 11111
Q ss_pred -cccccccccccCchHHHHHHHHHhhcC---CcEEEec
Q 021192 282 -QRTDLVGEFVGHTGPKTRRRVGHLLSE---ITCLTFI 315 (316)
Q Consensus 282 -~~~~~~~~~~g~~~~~~~~~~~~a~~~---~~~~~f~ 315 (316)
..+++++.+.+..... ...|..+..+ .+.|+||
T Consensus 79 ~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~I 115 (500)
T 3nbx_X 79 STPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFL 115 (500)
T ss_dssp CCHHHHHCCBC-----------CBCCTTSGGGCSEEEE
T ss_pred CCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeH
Confidence 2256666555543332 2234444444 4566765
No 182
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=1.5e-05 Score=67.58 Aligned_cols=50 Identities=38% Similarity=0.633 Sum_probs=38.1
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++++|.+...+.+..++.. ....+++|+||||+|||++|+++++.+..
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~----------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKT----------------GSMPHLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHH----------------TCCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred CHHHhhCCHHHHHHHHHHHHc----------------CCCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 356688888887777664431 23346999999999999999999998753
No 183
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=8.5e-06 Score=70.02 Aligned_cols=66 Identities=32% Similarity=0.482 Sum_probs=43.2
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecc
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~ 283 (316)
.++++++.+.+.+.+...+. ...+.+++|+||||+|||++++++++.+...... ...+..++.
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~-~~~~~~~~~ 97 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLK----------------SANLPHMLFYGPPGTGKTSTILALTKELYGPDLM-KSRILELNA 97 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTT----------------CTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHH-TTSEEEECS
T ss_pred CHHHhhCCHHHHHHHHHHHh----------------cCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccc-ccceEEEcc
Confidence 35667777777766655322 1233559999999999999999999997531000 014666666
Q ss_pred ccc
Q 021192 284 TDL 286 (316)
Q Consensus 284 ~~~ 286 (316)
++.
T Consensus 98 ~~~ 100 (353)
T 1sxj_D 98 SDE 100 (353)
T ss_dssp SSC
T ss_pred ccc
Confidence 553
No 184
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.96 E-value=4.1e-05 Score=61.71 Aligned_cols=50 Identities=28% Similarity=0.373 Sum_probs=37.1
Q ss_pred HhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 205 l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
++++++.+...+.+...+.. ...+..++++||||+|||++++.+++.+..
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~---------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSL---------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHH---------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred HHHHhCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45677777777776654431 123456899999999999999999998865
No 185
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.91 E-value=3.4e-05 Score=60.03 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=23.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++|+||||||||++|.++++.+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46999999999999999999999864
No 186
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.90 E-value=8.1e-06 Score=63.05 Aligned_cols=27 Identities=33% Similarity=0.611 Sum_probs=24.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
....++++||||+|||+++++++..+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356799999999999999999999986
No 187
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.90 E-value=2.2e-05 Score=67.51 Aligned_cols=50 Identities=26% Similarity=0.376 Sum_probs=34.8
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 204 ~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.++++++.+.+.+.++..+. ......+++|+||||+|||++++++++.+.
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~---------------~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSD---------------QPRDLPHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTT---------------CTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred CHHHhcCCHHHHHHHHHHHh---------------hCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 35567777776666554320 112334499999999999999999999653
No 188
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.85 E-value=4e-05 Score=66.33 Aligned_cols=50 Identities=28% Similarity=0.373 Sum_probs=36.9
Q ss_pred HhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 205 l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
++++++.+...+.+...+.. ...+..++|+||||+|||++++++++.+..
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~---------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSL---------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHH---------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred hhhccCcHHHHHHHHHHHHh---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45677777777776654321 123445799999999999999999998864
No 189
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.82 E-value=2.9e-05 Score=63.88 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=40.4
Q ss_pred HhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccc
Q 021192 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (316)
Q Consensus 205 l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~ 284 (316)
++.+++.......+.+.+.... .....++++||||||||++|++++..+... ..+++.++.+
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~--------------~~~~~vll~G~~GtGKt~la~~i~~~~~~~----~~~~~~v~~~ 66 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLA--------------PLDKPVLIIGERGTGKELIASRLHYLSSRW----QGPFISLNCA 66 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHT--------------TSCSCEEEECCTTSCHHHHHHHHHHTSTTT----TSCEEEEEGG
T ss_pred cccceeCCHHHHHHHHHHHHHh--------------CCCCCEEEECCCCCcHHHHHHHHHHhcCcc----CCCeEEEecC
Confidence 4556666655555544333211 234679999999999999999999876532 2378888876
Q ss_pred cc
Q 021192 285 DL 286 (316)
Q Consensus 285 ~~ 286 (316)
++
T Consensus 67 ~~ 68 (265)
T 2bjv_A 67 AL 68 (265)
T ss_dssp GS
T ss_pred CC
Confidence 54
No 190
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.81 E-value=1.4e-05 Score=67.19 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=32.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~ 286 (316)
....++++|+||||||++|++++...... ..+++.++.+.+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~----~~~~v~v~~~~~ 64 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARS----DRPLVTLNCAAL 64 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCS----SSCCCEEECSSC
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCccc----CCCeEEEeCCCC
Confidence 45679999999999999999999876432 237888876654
No 191
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.80 E-value=1.5e-05 Score=67.91 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=35.3
Q ss_pred HhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 205 l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
...+++.+.+++.+..... ...+++|+||||||||++|+++++.+..
T Consensus 26 ~~~i~g~~~~~~~l~~~l~------------------~~~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGIC------------------TGGHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHH------------------HTCCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred ccceeCcHHHHHHHHHHHH------------------cCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4567777777766544322 0247999999999999999999998865
No 192
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.77 E-value=3.4e-05 Score=62.83 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=24.7
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCC
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~ 272 (316)
..+++|+||||||||.+|+++++.+...|.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l~G~ 133 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPFYGC 133 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcccce
Confidence 346999999999999999999997544443
No 193
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.75 E-value=1.7e-05 Score=62.44 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=32.6
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccc
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 289 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~ 289 (316)
+..++++||||+|||+++++++..+...+. +++.+...+++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~----~~~~~~~~~~~~~ 96 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNV----SSLIVYVPELFRE 96 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTC----CEEEEEHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC----eEEEEEhHHHHHH
Confidence 378999999999999999999998875432 5555665555443
No 194
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.74 E-value=6.2e-05 Score=65.28 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=25.3
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+..++++||||+|||++++.+++.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45668999999999999999999998853
No 195
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=0.00016 Score=60.70 Aligned_cols=67 Identities=12% Similarity=-0.033 Sum_probs=43.8
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhhcC----CcEEEec
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSE----ITCLTFI 315 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~----~~~~~f~ 315 (316)
..+++|+||||+|||++|+++++.+.... .....+.++++++ + .-+-..+|++++.+... ..-|+||
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~-~~~~d~~~l~~~~---~--~~~id~ir~li~~~~~~p~~~~~kvviI 88 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFP-PKASDVLEIDPEG---E--NIGIDDIRTIKDFLNYSPELYTRKYVIV 88 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSC-CCTTTEEEECCSS---S--CBCHHHHHHHHHHHTSCCSSSSSEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhh-ccCCCEEEEcCCc---C--CCCHHHHHHHHHHHhhccccCCceEEEe
Confidence 46899999999999999999998743111 0233566666542 0 12244688999888532 2346665
No 196
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.72 E-value=0.00014 Score=63.10 Aligned_cols=66 Identities=26% Similarity=0.247 Sum_probs=40.6
Q ss_pred hhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccc
Q 021192 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (316)
Q Consensus 206 ~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~ 284 (316)
+.+++.+...+.+......... + ....++.++++||||+|||++++.+++.+.... ...++.++..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~-------~---~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~i~~~ 82 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLR-------N---PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT---TARFVYINGF 82 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHH-------S---TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC---CCEEEEEETT
T ss_pred CCCCChHHHHHHHHHHHHHHHc-------C---CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc---CeeEEEEeCc
Confidence 3456666666666554332211 1 011223799999999999999999999886431 1156666643
No 197
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.70 E-value=1.9e-05 Score=66.46 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=33.4
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHh-hcCCCCCCCeeeeccccccccc
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVGEF 290 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~-~~g~~~~~~~~~~~~~~~~~~~ 290 (316)
..+++|+||||+|||.+|++++..+. ..|. ++.-+...+++..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~----~v~~~~~~~l~~~l 196 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGV----STTLLHFPSFAIDV 196 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCC----CEEEEEHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCC----cEEEEEHHHHHHHH
Confidence 57899999999999999999999988 6543 45555555554443
No 198
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.61 E-value=7.6e-05 Score=60.16 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=25.7
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
....++++||||+|||+++++++..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999998753
No 199
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.59 E-value=8.2e-05 Score=57.11 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++.|+||+||||+++.|+..+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 45788999999999999999998765
No 200
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.55 E-value=8.5e-05 Score=55.34 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=24.7
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
...+.++||+|+|||+++++++..+...|
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g 64 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAG 64 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 45688999999999999999999886533
No 201
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.51 E-value=0.00016 Score=60.42 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=40.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhhcCCcEEEec
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLSEITCLTFI 315 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~f~ 315 (316)
..++++||||+|||++|.+++..... +-.++.+...+.++.+..+.+..++++++...... +|||
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~-----~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVI 188 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGG-----KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVI 188 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHT-----TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCC-----CEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEE
Confidence 34689999999999999999887222 01345552233344444555666666666665544 5443
No 202
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.49 E-value=0.00055 Score=58.31 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=25.1
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
.+..++|+||||+|||++|+++++.+...
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 44559999999999999999999998753
No 203
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.46 E-value=8.7e-05 Score=58.22 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=25.0
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.....+.+.|+||+||||+++.|++.+..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 45567899999999999999999998865
No 204
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.43 E-value=7.3e-05 Score=64.06 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=23.3
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++|+||||||||++|+++++.+..
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCcc
Confidence 45999999999999999999998753
No 205
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.36 E-value=0.00043 Score=57.59 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.0
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..+.-+++.||||+||||+++.++..+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456788899999999999999998774
No 206
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.32 E-value=0.00014 Score=56.24 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=24.2
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+..+++.|+||+|||++++.|++.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456889999999999999999998866
No 207
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.31 E-value=0.00091 Score=54.51 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.5
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..+..+++.|+||+||||+++.|+..+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4556788999999999999999999875
No 208
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.21 E-value=0.00021 Score=55.20 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=24.2
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHH-Hhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRL-LYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~-~~~ 269 (316)
..+..+++.|+||+|||++++.++.. +..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~ 37 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGF 37 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 34557899999999999999999998 443
No 209
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.20 E-value=0.00023 Score=60.44 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=24.8
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
....+++.|+||+|||+++++|+..+..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3456899999999999999999999876
No 210
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.16 E-value=0.0004 Score=71.30 Aligned_cols=73 Identities=8% Similarity=-0.049 Sum_probs=48.7
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccc--cccccc------------ccCchHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT--DLVGEF------------VGHTGPKTRRRVGHLL 306 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~--~~~~~~------------~g~~~~~~~~~~~~a~ 306 (316)
.....++++||||||||+||.+++......|-. -.|+.+..+ .+..+. ...+++.++.++..++
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~--v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT--CAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCC--EEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCc--EEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 356789999999999999999999887764310 012222211 011111 1244677888888899
Q ss_pred cCCcEEEec
Q 021192 307 SEITCLTFI 315 (316)
Q Consensus 307 ~~~~~~~f~ 315 (316)
...|++|||
T Consensus 1503 ~~~~~lVVI 1511 (2050)
T 3cmu_A 1503 SGAVDVIVV 1511 (2050)
T ss_dssp HTCCSEEEE
T ss_pred cCCCCEEEE
Confidence 999999987
No 211
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.14 E-value=0.00037 Score=54.58 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=24.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..+++.|+||+||||+++.|++.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4556888999999999999999998765
No 212
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.13 E-value=0.0012 Score=53.98 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=24.4
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
+.-+++.|+||+||||+++.++..+...|
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g 32 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNN 32 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 34578899999999999999999876544
No 213
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.12 E-value=0.00031 Score=53.38 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=22.1
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++.|+||+||||+++.|++.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~ 27 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKY 27 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4778999999999999999998764
No 214
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.12 E-value=0.00034 Score=53.76 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=24.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..+++.|+||+|||++++.++..+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 3456889999999999999999998765
No 215
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.12 E-value=0.00032 Score=54.08 Aligned_cols=25 Identities=32% Similarity=0.631 Sum_probs=22.8
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+.+.|+||+|||++++.|++.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4889999999999999999998875
No 216
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.12 E-value=0.00027 Score=54.05 Aligned_cols=25 Identities=36% Similarity=0.651 Sum_probs=22.8
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+.+.|+||+||||+++.|++.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4788999999999999999998875
No 217
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.11 E-value=0.0015 Score=53.28 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=21.7
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+++.||||+|||++|+.|+..+..
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhcCCC
Confidence 678999999999999999998764
No 218
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.11 E-value=0.00033 Score=53.12 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=27.2
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeec
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~ 282 (316)
+...+.+.|+||+||||+++.|+..+.. +++..+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~-------~~id~D 39 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKL-------EVLDTD 39 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTC-------CEEEHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCC-------CEEECh
Confidence 3456889999999999999999998876 666543
No 219
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.08 E-value=0.00035 Score=54.22 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=23.8
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..+++.|+||+||||+++.++..+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3456788999999999999999998754
No 220
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.05 E-value=0.00055 Score=54.23 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=23.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.++.+++.||||+||+|.|+.|++.+..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 4445677899999999999999998754
No 221
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.04 E-value=0.00036 Score=55.57 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=24.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..++|.|+||+||||+++.|+..+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4567889999999999999999998764
No 222
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.03 E-value=0.00058 Score=63.03 Aligned_cols=49 Identities=24% Similarity=0.505 Sum_probs=36.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHhHHHHHHcCCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 203 ~~l~~i~~~~~~k~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..++++++...+.+.+...+. ...+++|+||||||||++|++++..+..
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~------------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAAN------------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHH------------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccceEECchhhHhhcccccc------------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 345677787777766554332 2357999999999999999999997753
No 223
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.02 E-value=0.00055 Score=54.12 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=26.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~ 272 (316)
.+..+.+.|+||+||||+++.|++.+...++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~ 38 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGH 38 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4567889999999999999999999876543
No 224
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.02 E-value=0.00044 Score=53.60 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.6
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
.+++.|+||+||||+++.|++.+...|
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g 29 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQG 29 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 367899999999999999999988544
No 225
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.02 E-value=0.00063 Score=53.33 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=23.7
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+..+++.|+||+||||+++.|+..+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456889999999999999999998754
No 226
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.01 E-value=0.00045 Score=52.60 Aligned_cols=26 Identities=31% Similarity=0.554 Sum_probs=22.9
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+.+.||||+||||+++.|+..+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45889999999999999999998754
No 227
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.96 E-value=0.00083 Score=54.38 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.5
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..+++.||||+||||+++.|++.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5667899999999999999999987754
No 228
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.96 E-value=0.0003 Score=54.58 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=21.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
....+.+.||||+||||+++.|+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3445788999999999999999876
No 229
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.94 E-value=0.00061 Score=53.37 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=23.6
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..+..+.+.||||+||||+++.|+..+.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3456788899999999999999998873
No 230
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.94 E-value=0.00051 Score=53.43 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.1
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..+.+.|+||+||||+++.|++.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456889999999999999999998764
No 231
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.93 E-value=0.00066 Score=53.16 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=25.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
.+..+.+.||+|+||||+++.|+..+...|
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G 53 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKG 53 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 455678899999999999999999987544
No 232
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.93 E-value=0.00049 Score=54.17 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.1
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.++|.||||+||+|.|+.|++.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3678999999999999999998764
No 233
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.90 E-value=0.00063 Score=54.70 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=24.5
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..++|.|+||+||||+++.|+..+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4457889999999999999999998864
No 234
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.88 E-value=0.00065 Score=51.67 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=22.6
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+.+.|+||+|||++++.|+..+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999998765
No 235
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.88 E-value=0.0005 Score=52.64 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.9
Q ss_pred CceeeecCCCCcHHHHHHHHHH
Q 021192 244 PHMAFLGNPGTGKTMVARILGR 265 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~ 265 (316)
..+++.|+||+||||+++.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3478899999999999999998
No 236
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.87 E-value=0.00099 Score=52.50 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=25.7
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
.+..+.+.|+||+||||+++.|++.+...+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 355688999999999999999999887644
No 237
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.87 E-value=0.00051 Score=54.76 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=24.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..+++.|+||+||||+++.|++.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456889999999999999999998865
No 238
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.86 E-value=0.00051 Score=52.82 Aligned_cols=27 Identities=33% Similarity=0.283 Sum_probs=19.6
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+..+++.|+||+||||+++.|++.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 456788999999999999999988765
No 239
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.86 E-value=0.00075 Score=52.21 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=23.7
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
..+++.|+||+||||+++.|+..+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 30 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKE 30 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 457889999999999999999988743
No 240
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.86 E-value=0.00051 Score=53.35 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=22.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++.|+||+||||+++.++..+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45788999999999999999987753
No 241
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.85 E-value=0.00066 Score=53.78 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.1
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++.|+||+||||+++.|++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3778999999999999999988754
No 242
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.85 E-value=0.00058 Score=54.12 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.9
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++.|+||+||||+++.|++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3788999999999999999987754
No 243
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.84 E-value=0.00065 Score=52.63 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=23.2
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+..+.+.|+||+||||+++.++..+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346788999999999999999998754
No 244
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.84 E-value=0.00065 Score=52.94 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.5
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+..+.+.|+||+||||+++.|++.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345889999999999999999998764
No 245
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.82 E-value=0.00084 Score=50.79 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.4
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+.+.|+||+|||++++.|+..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~ 26 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNI 26 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3788999999999999999998765
No 246
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.82 E-value=0.0011 Score=51.23 Aligned_cols=29 Identities=34% Similarity=0.418 Sum_probs=24.6
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
.+..+.+.|+||+||||+++.++..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 34567889999999999999999998753
No 247
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.81 E-value=0.00093 Score=50.96 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.2
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
...+.+.|+||+||||+++.++..+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 34578899999999999999998764
No 248
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.81 E-value=0.00061 Score=52.53 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=22.5
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+.+.|+||+||||+++.|++.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35788999999999999999987754
No 249
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.80 E-value=0.0017 Score=56.69 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=23.9
Q ss_pred CCCceee--ecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAF--LGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~--~GppGtGKT~la~~la~~~~~ 269 (316)
.+..+++ +||||+|||++++.+++.+..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 4457888 999999999999999988754
No 250
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.80 E-value=0.00068 Score=53.14 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..+.+.|+||+||||+++.|++.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4456788999999999999999987653
No 251
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.79 E-value=0.00062 Score=54.45 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=23.7
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..+++.|+||+||||+++.|+..+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3456889999999999999999987754
No 252
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.78 E-value=0.00067 Score=51.58 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=20.0
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+.+.|+||+||||+++.| ..+..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTC
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCC
Confidence 4678999999999999999 55544
No 253
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.76 E-value=0.00093 Score=51.27 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.7
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.+.+.||+|+||||+++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 477899999999999999999875
No 254
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.76 E-value=0.0011 Score=70.20 Aligned_cols=60 Identities=18% Similarity=0.131 Sum_probs=37.2
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhh---------------cC
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLL---------------SE 308 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~---------------~~ 308 (316)
.+++|+||||||||++|+.+..... .-.+..++.+.. -++..+.+.++... ++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~------~~~~~~infsa~------ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~g 1335 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS------LYDVVGINFSKD------TTTEHILSALHRHTNYVTTSKGLTLLPKSDI 1335 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS------SCEEEEEECCTT------CCHHHHHHHHHHHBCCEEETTTEEEEEBSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC------CCceEEEEeecC------CCHHHHHHHHHHHhhhccccCCccccCCCCC
Confidence 5689999999999999965543321 114444444322 23455666666542 34
Q ss_pred CcEEEec
Q 021192 309 ITCLTFI 315 (316)
Q Consensus 309 ~~~~~f~ 315 (316)
.++||||
T Consensus 1336 k~~VlFi 1342 (2695)
T 4akg_A 1336 KNLVLFC 1342 (2695)
T ss_dssp SCEEEEE
T ss_pred ceEEEEe
Confidence 5689997
No 255
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.74 E-value=0.00093 Score=52.62 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=24.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
..+++.|+||+||||+++.|+..+...|
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 3578899999999999999999887643
No 256
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.72 E-value=0.00086 Score=53.25 Aligned_cols=26 Identities=19% Similarity=0.485 Sum_probs=23.2
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..++|.|+||+||||+++.|+..+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 46888999999999999999998864
No 257
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.65 E-value=0.0011 Score=52.46 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.1
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++.|+||+||||+++.|+..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~ 26 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI 26 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3788999999999999999998754
No 258
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.63 E-value=0.0014 Score=51.38 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.1
Q ss_pred ceeeecCCCCcHHHHHHHHHH
Q 021192 245 HMAFLGNPGTGKTMVARILGR 265 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~ 265 (316)
.+.+.|++|+||||+++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999987
No 259
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.60 E-value=0.0013 Score=53.30 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.3
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+..+.+.||||+||||+++.|++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 567889999999999999999977643
No 260
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.58 E-value=0.0016 Score=50.39 Aligned_cols=26 Identities=42% Similarity=0.510 Sum_probs=22.6
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
+.+.|+||+||||+++.+++.+...|
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKG 28 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 67899999999999999999885434
No 261
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.57 E-value=0.0014 Score=51.39 Aligned_cols=28 Identities=21% Similarity=0.301 Sum_probs=23.8
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..+.-+++.||||+||||+++.|+..+.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3456688999999999999999998773
No 262
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.55 E-value=0.0017 Score=50.38 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=23.2
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhhcCC
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYMVGI 272 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~~g~ 272 (316)
+.+.|+||+||||+++.|++.+...|+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~ 29 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGK 29 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 678999999999999999999865444
No 263
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.54 E-value=0.0026 Score=55.77 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=23.8
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+.-+++.|+||+||||+++.++..+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~ 284 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGY 284 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 34566788999999999999999886643
No 264
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.49 E-value=0.0023 Score=49.00 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=23.8
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
...+.+.|++|+||||+++.++..+...|
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g 33 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHG 33 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 34577899999999999999999875433
No 265
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.47 E-value=0.0017 Score=50.71 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=22.2
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+.+.|+||+||||+++.|++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 3678999999999999999998764
No 266
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.47 E-value=0.0019 Score=51.52 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..+.+.||||+||||+++.+++.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998763
No 267
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.47 E-value=0.002 Score=48.34 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=26.8
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT 275 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~ 275 (316)
....+.+.||.|+||||+.|.++..+...|-+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~ 65 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKS 65 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEE
Confidence 3445789999999999999999998854555443
No 268
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.45 E-value=0.0019 Score=50.87 Aligned_cols=29 Identities=28% Similarity=0.420 Sum_probs=24.8
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.....+.+.||+|+||||+++.|+..+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34556788999999999999999999874
No 269
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.44 E-value=0.0035 Score=49.02 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.0
Q ss_pred ceeeecCCCCcHHHHHHHHHHHH
Q 021192 245 HMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~ 267 (316)
.+.+.|++|+||||+++.|+. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478899999999999999998 5
No 270
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.44 E-value=0.0022 Score=51.30 Aligned_cols=28 Identities=39% Similarity=0.385 Sum_probs=23.5
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..+.+.||||+|||++++.|+..+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3567889999999999999999987753
No 271
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.43 E-value=0.0018 Score=51.60 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=21.9
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.++|.|+||+||||+++.|+..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3678999999999999999998753
No 272
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.42 E-value=0.0024 Score=49.88 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=20.2
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHH
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
+...+++|+||+|||++|..+....
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3457889999999999998876554
No 273
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.42 E-value=0.0017 Score=50.18 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.4
Q ss_pred eeeecCCCCcHHHHHHHHHHHH
Q 021192 246 MAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~ 267 (316)
+.+.||||+||||+++.++...
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 6789999999999999998743
No 274
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.41 E-value=0.0024 Score=50.31 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=23.1
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.+.-+.+.||+|+||||+++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455678899999999999999998764
No 275
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.40 E-value=0.0022 Score=50.22 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.6
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
.+..+.+.||||+||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34567899999999999999999876
No 276
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.40 E-value=0.00073 Score=53.18 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=27.2
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCe
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 278 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~ 278 (316)
..+..+.+.|+||+||||+++.|+..+....++..+.+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~ 56 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDF 56 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcc
Confidence 34456778999999999999999987643344444433
No 277
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.40 E-value=0.0069 Score=54.66 Aligned_cols=29 Identities=34% Similarity=0.678 Sum_probs=24.8
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
+.-+++.|.||+|||++++.|++.+...+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 44577899999999999999999997743
No 278
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.38 E-value=0.0025 Score=49.79 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.7
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHH
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
..-+.+.||+|+||||+++.|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3457889999999999999999875
No 279
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.37 E-value=0.0023 Score=49.12 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=21.8
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.-+.+.||+|+||||+++.|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578899999999999999998764
No 280
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.36 E-value=0.0022 Score=50.86 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=23.0
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
.....+.+.||+|+||||+++.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 445668899999999999999999876
No 281
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.35 E-value=0.0016 Score=54.61 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.2
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++.||+|+|||++++.||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~ 31 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPC 31 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35788999999999999999998875
No 282
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.34 E-value=0.0024 Score=51.82 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=23.9
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
...+.+.|+||+||||+++.|+..+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 346899999999999999999998875
No 283
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.34 E-value=0.0025 Score=49.75 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.2
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
...+.+.||+|+||||+.+.+...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35688999999999999999988764
No 284
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.33 E-value=0.0022 Score=49.43 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.5
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~ 268 (316)
-+.+.||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 477899999999999999998775
No 285
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.33 E-value=0.0022 Score=49.77 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.8
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+.+.|++|+||||+++.++..++.
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~ 38 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC
Confidence 567899999999999999997544
No 286
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.31 E-value=0.0026 Score=54.79 Aligned_cols=29 Identities=28% Similarity=0.174 Sum_probs=24.8
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.....+.+.||||+|||+++++++.....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g 195 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGG 195 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 45567899999999999999999987654
No 287
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.30 E-value=0.0021 Score=50.27 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.5
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHH
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
+..+.+.|+||+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999987
No 288
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.26 E-value=0.00078 Score=61.93 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=23.8
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++|+||||||||.+|+++++.+..
T Consensus 327 ~~~vLL~GppGtGKT~LAr~la~~~~r 353 (595)
T 3f9v_A 327 DIHILIIGDPGTAKSQMLQFISRVAPR 353 (595)
T ss_dssp SCCEEEEESSCCTHHHHHHSSSTTCSC
T ss_pred CcceEEECCCchHHHHHHHHHHHhCCC
Confidence 348999999999999999999988754
No 289
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.24 E-value=0.0027 Score=49.97 Aligned_cols=36 Identities=36% Similarity=0.574 Sum_probs=26.7
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh-cCCCCCCC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM-VGILPTDR 277 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~-~g~~~~~~ 277 (316)
.+..+.+.||+|+||||+++.|+..+.. .++++.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~ 41 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDH 41 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCc
Confidence 4456788999999999999999998762 34443333
No 290
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.18 E-value=0.011 Score=49.65 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=24.0
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..|.-+.+.||+|+||||+++.|+..+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4555678899999999999999998876
No 291
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.15 E-value=0.0034 Score=49.50 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=23.6
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.+..+.+.|+||+||||+++.++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345678899999999999999999887
No 292
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.11 E-value=0.0042 Score=48.26 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=23.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
...-+++.||+|+|||+|++.|.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445678899999999999999998764
No 293
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.07 E-value=0.0037 Score=50.56 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=23.5
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..+.-+.+.||+|+||||+++.|+..+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445578899999999999999999774
No 294
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.05 E-value=0.0033 Score=51.05 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..+.+.|+||+||||+++.|+..+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4456788999999999999999998764
No 295
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.03 E-value=0.011 Score=49.39 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=25.9
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 239 GARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 239 ~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
....+..+.+.||+|+||||+++.++..+..
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3345667889999999999999999998864
No 296
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.03 E-value=0.0042 Score=48.63 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.1
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+.+.|++|+|||++++.++..+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~ 28 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5778999999999999999997753
No 297
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.03 E-value=0.0033 Score=48.98 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
.+..+.+.|++|+||||+++.|++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4556888999999999999999986
No 298
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.98 E-value=0.02 Score=48.18 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=27.6
Q ss_pred CccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 236 LKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 236 ~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+.+....+..+.+.|++|+||||++..+|..+..
T Consensus 98 l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 98 IDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp CCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4444455667889999999999999999998875
No 299
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.95 E-value=0.0051 Score=50.00 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=21.9
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
...+.+.||+|+||||+++.|++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34678899999999999999996543
No 300
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.94 E-value=0.038 Score=48.48 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=25.7
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
.|..+++.|+||+||||++..+|..+...|
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G 128 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRG 128 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCC
Confidence 466788999999999999999998887644
No 301
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.93 E-value=0.0049 Score=48.40 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
...-+.+.||+|+||||++++|+..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345678899999999999999998773
No 302
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.92 E-value=0.0061 Score=48.71 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
...-+.|.|+||+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3445678899999999999999999875
No 303
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.90 E-value=0.0065 Score=46.97 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=23.8
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
.+.+.||+|+||||+.+.++..+...|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 477899999999999999999887656
No 304
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.89 E-value=0.0056 Score=50.93 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=23.2
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+.-+++.||+|+|||+|+..+++.+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~ 36 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPV 36 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCC
Confidence 445678999999999999999998764
No 305
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.88 E-value=0.0079 Score=45.44 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=24.3
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
...+.+.|++|+|||+++..++..+...|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 34578899999999999999999886543
No 306
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.87 E-value=0.0018 Score=51.07 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.4
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
+.+.|+||+||||+++.|+..+...
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 6789999999999999999998753
No 307
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.86 E-value=0.003 Score=47.98 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=17.6
Q ss_pred CCCceeeecCCCCcHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARI 262 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~ 262 (316)
...-+.+.||+|+||||+++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 344578899999999999994
No 308
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.80 E-value=0.01 Score=50.45 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=22.2
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..++++||+|+|||++++.+++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 4688999999999999999988764
No 309
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.79 E-value=0.0046 Score=51.59 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.9
Q ss_pred CceeeecCCCCcHHHHHHHHHHHH
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~ 267 (316)
..+++.|+||+||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 347889999999999999999854
No 310
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.77 E-value=0.009 Score=50.37 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.0
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.-+++.||+|+|||+|+..||+.+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCC
Confidence 35788999999999999999998874
No 311
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.77 E-value=0.0063 Score=46.84 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.4
Q ss_pred eeeecCCCCcHHHHHHHHHHHHh
Q 021192 246 MAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~ 268 (316)
+++.||+|+|||+|++.|.....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999877754
No 312
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.76 E-value=0.0059 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.1
Q ss_pred CCceeeecCCCCcHHHHHHHHHH
Q 021192 243 PPHMAFLGNPGTGKTMVARILGR 265 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~ 265 (316)
+..+.+.|+||+||||+++.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 44578899999999999999994
No 313
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.76 E-value=0.0073 Score=47.14 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=23.9
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..+.+.|++|+||||+++.++..+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4456788999999999999999998754
No 314
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.76 E-value=0.0087 Score=47.30 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.9
Q ss_pred CceeeecCCCCcHHHHHHHHHH
Q 021192 244 PHMAFLGNPGTGKTMVARILGR 265 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~ 265 (316)
..+.+.|++|+||||+++.|+.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999987
No 315
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.75 E-value=0.007 Score=50.47 Aligned_cols=27 Identities=37% Similarity=0.651 Sum_probs=24.0
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
+....+.+.||+|+|||||+++|+..+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 455678899999999999999999987
No 316
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.73 E-value=0.0067 Score=48.68 Aligned_cols=28 Identities=25% Similarity=0.390 Sum_probs=23.7
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..+..+.+.|++|+|||++++.|+..+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3455678899999999999999998764
No 317
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.67 E-value=0.0079 Score=49.91 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.0
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+..+.+.|++|+||||+++.|+..+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34566788999999999999999998875
No 318
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.66 E-value=0.017 Score=49.43 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=26.0
Q ss_pred CCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 239 GARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 239 ~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
....+..+.+.||+|+||||+++.|+..+..
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3445667889999999999999999998864
No 319
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.66 E-value=0.024 Score=50.58 Aligned_cols=29 Identities=31% Similarity=0.608 Sum_probs=25.1
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
.+..+++.|.||+|||++++.+++.+...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 44568899999999999999999998763
No 320
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.65 E-value=0.0075 Score=47.98 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=22.5
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+.+.|+||+||||+++.|++.+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCC
Confidence 34678999999999999999998864
No 321
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.64 E-value=0.007 Score=47.85 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+.+.|++|+|||++++.++..+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~ 29 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSM 29 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 45789999999999999999997653
No 322
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.61 E-value=0.008 Score=47.65 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=23.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
...-+.+.||+|+|||||.+.++....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 445678899999999999999988764
No 323
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.60 E-value=0.0087 Score=47.60 Aligned_cols=26 Identities=31% Similarity=0.338 Sum_probs=22.0
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
...+.+.||||+|||++++.++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34678899999999999999986654
No 324
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.60 E-value=0.0087 Score=50.23 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=24.3
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+.-+.+.||+|+||||+++.|+..+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34556778999999999999999998863
No 325
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.60 E-value=0.0038 Score=49.94 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=16.2
Q ss_pred CCCceeeecCCCCcHHHHHHHHH-HHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILG-RLL 267 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la-~~~ 267 (316)
...-+.+.||+|+||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 44567889999999999999998 664
No 326
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.58 E-value=0.043 Score=48.75 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=27.7
Q ss_pred CCccCCCCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 235 GLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 235 ~~~~~~~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
++.+....+..+.+.|++|+||||+++.|+..+..
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 34444455667889999999999999999998764
No 327
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.56 E-value=0.0068 Score=48.22 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.3
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHH
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
..-+.+.||||+|||++++.++...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457889999999999999998754
No 328
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.56 E-value=0.0066 Score=48.96 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGR 265 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~ 265 (316)
...-+.+.||+|+||||+++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 345578899999999999999984
No 329
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.54 E-value=0.015 Score=51.68 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=25.0
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhhcCC
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYMVGI 272 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~~g~ 272 (316)
.+++.|+||||||++++.++..+...|.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999887553
No 330
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.53 E-value=0.0065 Score=51.99 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.4
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++.||+|+||||+.+++...+..
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccC
Confidence 5788999999999999999988764
No 331
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.53 E-value=0.016 Score=48.35 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=25.0
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+..+.+.||+|+||||++..+|..+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 45567789999999999999999998865
No 332
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.53 E-value=0.026 Score=51.84 Aligned_cols=30 Identities=33% Similarity=0.373 Sum_probs=24.8
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
.+..+.|.|.||+||||++++|++.+...|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G 80 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHG 80 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 345678899999999999999999985433
No 333
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.52 E-value=0.011 Score=49.38 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..+.+.||+|+||||+++.++..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4567889999999999999999988764
No 334
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.48 E-value=0.011 Score=46.72 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=24.9
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcCC
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g~ 272 (316)
.-+.|.|++|+||||+++.++..+...|+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 35 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGI 35 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 34678899999999999999999987654
No 335
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.46 E-value=0.0088 Score=50.55 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=22.3
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+.+.||+|+|||++++.|+..+..
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~ 33 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNG 33 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTE
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCC
Confidence 4678999999999999999998863
No 336
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.43 E-value=0.01 Score=46.81 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=20.9
Q ss_pred CCCceeeecCCCCcHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGR 265 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~ 265 (316)
...-+++.||||+|||++++.++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344678999999999999999988
No 337
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.40 E-value=0.0099 Score=49.52 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.9
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
-+++.||+|+|||+++..+++.+..
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCcc
Confidence 4678999999999999999998764
No 338
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.39 E-value=0.019 Score=52.47 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=24.5
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
..+++.|+||||||++++.+...+...|
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g 232 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLG 232 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 5688899999999999999998887644
No 339
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.38 E-value=0.031 Score=51.00 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=25.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
.+..+.|.|+||+||||+|++|++.+...|
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G 424 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQG 424 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHC
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccC
Confidence 445678899999999999999999988543
No 340
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.37 E-value=0.0094 Score=46.57 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.8
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+.+.|++|+|||++++.||+.+..
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4778899999999999999999876
No 341
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.35 E-value=0.015 Score=46.63 Aligned_cols=30 Identities=23% Similarity=0.363 Sum_probs=26.1
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCC
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~ 272 (316)
+.-+.|.|++|+||||+++.++..+...|+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~ 56 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGI 56 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 456788999999999999999999988665
No 342
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.33 E-value=0.0094 Score=47.81 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
...-+.+.||||+|||++++.++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3445789999999999999999875
No 343
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.29 E-value=0.011 Score=48.17 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=23.6
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+...+.+.||+|+||||+.++++..+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 3445789999999999999999998753
No 344
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.25 E-value=0.051 Score=46.30 Aligned_cols=28 Identities=25% Similarity=0.147 Sum_probs=23.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
...-+.++||||+|||+++..++.....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~ 87 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA 87 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445788999999999999999877654
No 345
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.22 E-value=0.015 Score=49.14 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=25.2
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+..+.+.||+|+||||+++.|+..+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45667889999999999999999998865
No 346
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.21 E-value=0.019 Score=43.67 Aligned_cols=28 Identities=36% Similarity=0.377 Sum_probs=23.4
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
...+.+.|++|+|||++.+.+...+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 3467889999999999999998887653
No 347
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.21 E-value=0.007 Score=48.75 Aligned_cols=27 Identities=22% Similarity=0.480 Sum_probs=22.7
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.. ..+.+.||+|+|||||.++++....
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44 6678999999999999999987653
No 348
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.14 E-value=0.0065 Score=48.79 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=22.1
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
.....+.+.||+|+|||||.++++...
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 445567899999999999999997544
No 349
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.10 E-value=0.013 Score=50.53 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.3
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
-+++.||+|+|||+++..|+..+..
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred EEEEECcchhhHHHHHHHHHHHCCC
Confidence 4678999999999999999998875
No 350
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.10 E-value=0.02 Score=45.35 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=25.6
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcCC
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g~ 272 (316)
...+++.|+||+|||+++-.+|..+...|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~ 35 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGV 35 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 356888999999999999999999887663
No 351
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.09 E-value=0.011 Score=46.39 Aligned_cols=30 Identities=23% Similarity=0.161 Sum_probs=23.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcCCC
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVGIL 273 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g~~ 273 (316)
..+.+.||+|+|||||.++++......|-+
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl~p~~G~I 52 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQALQSKQV 52 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcCCee
Confidence 347889999999999999999872234544
No 352
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.08 E-value=0.014 Score=48.82 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=23.2
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.+..+.+.||+|+||||+++.|+..+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445677899999999999999998765
No 353
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.05 E-value=0.015 Score=50.49 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=32.2
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~ 286 (316)
....+++.|++||||+.+|+++...... ..++|+.++.+.+
T Consensus 159 ~~~~vli~Ge~GtGK~~lAr~ih~~s~r----~~~~fv~v~~~~~ 199 (387)
T 1ny5_A 159 AECPVLITGESGVGKEVVARLIHKLSDR----SKEPFVALNVASI 199 (387)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHSTT----TTSCEEEEETTTS
T ss_pred CCCCeEEecCCCcCHHHHHHHHHHhcCC----CCCCeEEEecCCC
Confidence 3455799999999999999999886543 3458999997654
No 354
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.01 E-value=0.017 Score=45.85 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=26.2
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh-cCC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM-VGI 272 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~-~g~ 272 (316)
.+.-+.|.|++|+||||+++.+++.+.. .|+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~ 51 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGV 51 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCc
Confidence 4456778899999999999999999987 554
No 355
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.98 E-value=0.072 Score=47.67 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=24.7
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
..+..+++.|+||+||||++..|+..+...|
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G 129 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKG 129 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 4566788999999999999999998876543
No 356
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.98 E-value=0.019 Score=45.20 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=25.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhcCC
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~g~ 272 (316)
.-+.|.|++|+||||.++.++..+...|+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 34778899999999999999999988775
No 357
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.96 E-value=0.057 Score=46.30 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=22.9
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
...-++++||||+|||+++..++.....
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~ 100 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK 100 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH
Confidence 3445788999999999999998887654
No 358
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.95 E-value=0.026 Score=58.41 Aligned_cols=70 Identities=9% Similarity=0.055 Sum_probs=45.5
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccccccc----cc--------CchHHHHHHHHHhhc--
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF----VG--------HTGPKTRRRVGHLLS-- 307 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~----~g--------~~~~~~~~~~~~a~~-- 307 (316)
+..-+++.|+||+|||+++..++......+ ++++-++..+...++ .| .++..+.++++.++.
T Consensus 731 ~G~lilIaG~PG~GKTtLalqlA~~~a~~g----~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~ 806 (2050)
T 3cmu_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREG----KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 806 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT----CCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcC----CcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHh
Confidence 445678899999999999999998876522 256666655444433 22 233345555555544
Q ss_pred --CCcEEEec
Q 021192 308 --EITCLTFI 315 (316)
Q Consensus 308 --~~~~~~f~ 315 (316)
..|.+|||
T Consensus 807 ~~~~~~LVII 816 (2050)
T 3cmu_A 807 RSGAVDVIVV 816 (2050)
T ss_dssp HHTCCSEEEE
T ss_pred hccCCCEEEE
Confidence 67788876
No 359
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.95 E-value=0.018 Score=47.83 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=23.8
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
...-+++.||||+|||++++.++.....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4456788999999999999999988764
No 360
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.94 E-value=0.011 Score=45.82 Aligned_cols=26 Identities=23% Similarity=0.141 Sum_probs=22.1
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
...+++.||+|+|||++|..+++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 34578999999999999999988654
No 361
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.94 E-value=0.015 Score=47.90 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=22.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
....+++.||||+|||++++.++....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 334578899999999999999988654
No 362
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.93 E-value=0.017 Score=45.94 Aligned_cols=28 Identities=25% Similarity=0.231 Sum_probs=21.5
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
..-+.|.|++|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4557889999999999999999999765
No 363
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.90 E-value=0.013 Score=46.57 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=21.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
....+.+.||+|+|||||.++++...
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44567889999999999999997544
No 364
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.88 E-value=0.012 Score=48.93 Aligned_cols=27 Identities=19% Similarity=0.461 Sum_probs=20.3
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+.-+.+.||+|+||||+++.++..+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~ 31 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRR 31 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345788999999999999999998774
No 365
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.87 E-value=0.0087 Score=48.90 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=22.1
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
.....+.+.||+|+|||||.++++...
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345567889999999999999997654
No 366
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.83 E-value=0.011 Score=44.85 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
..+.+.|++|+||||+++.|...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 357889999999999999999998763
No 367
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.83 E-value=0.021 Score=47.48 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=25.5
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh-cC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM-VG 271 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~-~g 271 (316)
.+..+.+.||+|+||||++..++..+.. .|
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 4567889999999999999999998874 44
No 368
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.82 E-value=0.0071 Score=51.22 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.8
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..+.+.||+|+||||+.++++....
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4588999999999999999987764
No 369
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.82 E-value=0.01 Score=50.63 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=22.9
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.....+.+.||+|+|||||.|+|+....
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 3445678899999999999999987653
No 370
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.79 E-value=0.016 Score=46.57 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=23.1
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.....+.+.||+|+|||||.++++....
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3455678899999999999999987654
No 371
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.76 E-value=0.022 Score=45.71 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=21.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
....+++.||||+|||+++..++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344578899999999999888776553
No 372
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.76 E-value=0.0097 Score=48.61 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=22.3
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
.....+.+.||+|+|||||.++++...
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 445567889999999999999997654
No 373
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.75 E-value=0.014 Score=46.42 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=23.2
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+.+.|++|+|||++++.||..+..
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~ 40 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGI 40 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCC
Confidence 45678899999999999999999876
No 374
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.74 E-value=0.0094 Score=48.55 Aligned_cols=27 Identities=19% Similarity=0.438 Sum_probs=22.0
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
.....+.+.||+|+|||||.++++...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344567889999999999999997654
No 375
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.74 E-value=0.015 Score=49.99 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=23.5
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
...+.+.||+|+|||||++.|+..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457889999999999999999988653
No 376
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.69 E-value=0.047 Score=46.70 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=23.9
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
....+.+.|+||+|||+++..++..+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4457889999999999999999988754
No 377
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.68 E-value=0.057 Score=48.98 Aligned_cols=29 Identities=31% Similarity=0.411 Sum_probs=24.9
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
+..+.+.|+||+||||+++.|++.+...|
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G 400 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARG 400 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcC
Confidence 44578899999999999999999887654
No 378
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.67 E-value=0.022 Score=48.57 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=22.3
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.-+.++||||+|||+|+..++..+..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45678999999999999999988754
No 379
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.67 E-value=0.018 Score=45.47 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=21.6
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
....+.+.||+|+|||||.++++...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44567889999999999999997654
No 380
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.64 E-value=0.013 Score=50.46 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=23.1
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.....+.+.||+|+|||||.|.|+....
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3445678899999999999999987653
No 381
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.62 E-value=0.036 Score=46.91 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.3
Q ss_pred CceeeecCCCCcHHHHHHHHHHHH
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~ 267 (316)
..++++||+|+|||++++.+++..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc
Confidence 468899999999999999998764
No 382
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.62 E-value=0.08 Score=44.88 Aligned_cols=29 Identities=34% Similarity=0.541 Sum_probs=24.0
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.....+.+.||||+||||+.+.++..+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 34556789999999999999999987653
No 383
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.61 E-value=0.026 Score=43.31 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=19.6
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
-.+++||||+|||+++..++..+..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999998666665543
No 384
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.60 E-value=0.033 Score=59.43 Aligned_cols=54 Identities=22% Similarity=0.157 Sum_probs=39.8
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeecccccccccccCchHHHHHHHHHhhc-CCcE
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRVGHLLS-EITC 311 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~-~~~~ 311 (316)
..++.||||||||.+++.+|+.++. +++.++.++-+. .+.+..+|.-|.. |+++
T Consensus 647 ~~~l~GpaGtGKTe~vk~LA~~lg~-------~~v~~nc~e~ld------~~~lg~~~~g~~~~Gaw~ 701 (2695)
T 4akg_A 647 GGCFFGPAGTGKTETVKAFGQNLGR-------VVVVFNCDDSFD------YQVLSRLLVGITQIGAWG 701 (2695)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTC-------CCEEEETTSSCC------HHHHHHHHHHHHHHTCEE
T ss_pred CCcccCCCCCCcHHHHHHHHHHhCC-------cEEEEECCCCCC------hhHhhHHHHHHHhcCCEe
Confidence 3578899999999999999999998 899998865433 3445555655443 4443
No 385
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.59 E-value=0.023 Score=46.49 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.2
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
.....+.+.||+|+|||||.++++..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44556789999999999999999875
No 386
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.58 E-value=0.019 Score=46.21 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.7
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+.+.|++|+||||+++.|++.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 45788999999999999999998853
No 387
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.55 E-value=0.023 Score=52.84 Aligned_cols=25 Identities=28% Similarity=0.215 Sum_probs=17.7
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
-.++.||||||||+++-.+...+..
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~ 231 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVK 231 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4688999999999865544444443
No 388
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.54 E-value=0.014 Score=49.96 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=22.9
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.....+.+.||+|+|||||.|+|+....
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 3445678899999999999999987653
No 389
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.53 E-value=0.016 Score=47.63 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=21.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
....+.+.||+|+|||||.++++...
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44557889999999999999996644
No 390
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.50 E-value=0.023 Score=42.87 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=20.8
Q ss_pred CCceeeecCCCCcHHHHHHHHHHH
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~ 266 (316)
...++|.|+||+|||++|..+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 357899999999999999988774
No 391
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.50 E-value=0.023 Score=45.97 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.5
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
....+.+.||+|+|||||.++++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456788999999999999999875
No 392
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.50 E-value=0.021 Score=46.44 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=22.2
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
.....+.+.||+|+|||||.++++...
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345567889999999999999997654
No 393
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.49 E-value=0.0099 Score=48.09 Aligned_cols=26 Identities=19% Similarity=0.586 Sum_probs=21.6
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
....+.+.||+|+|||||.++++...
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44567889999999999999996654
No 394
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.48 E-value=0.012 Score=48.29 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=22.3
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
.....+.+.||+|+|||||.++|+..+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445567889999999999999996654
No 395
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.47 E-value=0.015 Score=49.82 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=22.8
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.....+.+.||+|+|||||.|+|+....
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 3445678899999999999999987653
No 396
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.47 E-value=0.02 Score=46.83 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=21.6
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
....+.+.||+|+|||||.++++...
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44567889999999999999997644
No 397
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.46 E-value=0.02 Score=51.32 Aligned_cols=27 Identities=4% Similarity=-0.080 Sum_probs=24.3
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
...+.|.|.+|+||||++++|++.+..
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 356788999999999999999999986
No 398
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.45 E-value=0.023 Score=46.54 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.0
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.+.+.||+|+||||+.+.|+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 467899999999999999988763
No 399
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.44 E-value=0.015 Score=49.93 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=22.9
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.....+.+.||+|+|||||.|+|+....
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3445678899999999999999987653
No 400
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.42 E-value=0.057 Score=49.75 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=22.0
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+++.|+||||||+++..+...+..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999998888777764
No 401
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.42 E-value=0.021 Score=45.98 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=21.6
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
....+.+.||+|+|||||.++++...
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44567889999999999999997654
No 402
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.39 E-value=0.022 Score=46.41 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=22.1
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
.....+.+.||+|+|||||.++|+..+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345567889999999999999997643
No 403
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.39 E-value=0.021 Score=48.69 Aligned_cols=27 Identities=30% Similarity=0.520 Sum_probs=22.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
....+.+.||+|+|||||.|+|+....
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 445678899999999999999987653
No 404
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.38 E-value=0.028 Score=49.28 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=25.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
.+..+++.||+|+||||++..+|..+...|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G 125 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG 125 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 456778899999999999999998887643
No 405
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.38 E-value=0.019 Score=46.32 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=22.2
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
....+.+.||+|+|||||.++++....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445678899999999999999977653
No 406
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.37 E-value=0.025 Score=43.11 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.9
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~ 268 (316)
-.+++||+|+|||++.++|.-.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 467899999999999999987664
No 407
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.37 E-value=0.022 Score=45.45 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
....+.+.||+|+|||||.++++..+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 445678899999999999999977653
No 408
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.36 E-value=0.18 Score=44.20 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=25.7
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhhc
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~~ 270 (316)
..+..+++.|++|+||||++-.||..+...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 456678889999999999999999888764
No 409
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.34 E-value=0.026 Score=48.66 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=23.8
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
....+++.||+|+||||+.++++..+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 3445789999999999999999998764
No 410
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.32 E-value=0.023 Score=45.99 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=21.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
....+.+.||+|+|||||.++++...
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44567889999999999999996644
No 411
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.30 E-value=0.024 Score=46.41 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=22.0
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
.....+.+.||+|+|||||.++++...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345567889999999999999997654
No 412
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.27 E-value=0.024 Score=48.35 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.1
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
...-+.++||||+|||+|++.++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34457889999999999999998875
No 413
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.27 E-value=0.013 Score=49.96 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=22.7
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.....+.+.||+|+|||||.|.|+....
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 3445678899999999999999987543
No 414
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.26 E-value=0.017 Score=52.34 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=23.7
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
...+.+.|++|+||||++++|+..+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 445788999999999999999999864
No 415
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.25 E-value=0.047 Score=55.71 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=24.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+...++++||||+|||+++..++.....
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence 4556889999999999999999988765
No 416
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.25 E-value=0.024 Score=46.75 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=22.2
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
.....+.+.||+|+|||||.++++...
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344567889999999999999997654
No 417
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.23 E-value=0.063 Score=40.95 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=21.1
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
....+++.|++|+|||+|...+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999988763
No 418
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.19 E-value=0.028 Score=43.50 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.8
Q ss_pred CceeeecCCCCcHHHHHHHHHHHH
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~ 267 (316)
..+.+.|++|+|||+|.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998753
No 419
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.17 E-value=0.025 Score=48.67 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
....+.+.||+|+|||||.|+|+....
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 445678899999999999999987653
No 420
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.17 E-value=0.028 Score=43.23 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=21.2
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..+.+.|++|+|||+|.+.+.....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999987543
No 421
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.17 E-value=0.04 Score=43.45 Aligned_cols=27 Identities=30% Similarity=0.191 Sum_probs=23.8
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..-+.|.|++|+||||+++.+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456788999999999999999998875
No 422
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.16 E-value=0.025 Score=45.88 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=22.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
....+.+.||+|+|||||.++++....
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 445678899999999999999987653
No 423
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.13 E-value=0.031 Score=49.11 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=25.0
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+..+++.|+||+|||+++..++..+..
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44678899999999999999999988764
No 424
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.12 E-value=0.037 Score=43.45 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.0
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
....++++.|++|+|||++...+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999887654
No 425
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.98 E-value=0.01 Score=48.47 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=23.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.+.-+.|.|++|+||||+++.|+..+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 445678899999999999999998874
No 426
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.97 E-value=0.025 Score=46.16 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=21.2
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHH
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
...+.+.||+|+|||||.++++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567899999999999999997654
No 427
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.97 E-value=0.046 Score=43.31 Aligned_cols=27 Identities=19% Similarity=-0.137 Sum_probs=21.7
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhhcC
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYMVG 271 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~~g 271 (316)
-.+++||||+|||+++..++..+...|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g 40 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYAD 40 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 356689999999999988888776533
No 428
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.90 E-value=0.021 Score=49.34 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=22.4
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
.....+.+.||+|+||||+.|.|+...
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 345567889999999999999998754
No 429
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.88 E-value=0.042 Score=46.95 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=23.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
...-++++|+||+|||++|..++.....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~ 89 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR 89 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3445788999999999999999887654
No 430
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.81 E-value=0.013 Score=49.98 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=22.9
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.....+.+.||+|+|||||.|+|+....
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3445678899999999999999987653
No 431
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.77 E-value=0.025 Score=48.36 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=22.1
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
.....+.+.||+|+|||||.|+++...
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 345567889999999999999997654
No 432
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.74 E-value=0.056 Score=42.34 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=22.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+...+-++|..|+|||++++.++. ++.
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~g~ 34 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-RGA 34 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-CCC
Confidence 345578899999999999999987 444
No 433
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.72 E-value=0.02 Score=47.41 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=23.1
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.....+.+.||+|+|||||.++++....
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4455678899999999999999987653
No 434
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.70 E-value=0.04 Score=48.15 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=22.0
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+++.||+|+||||+.+++...+..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCC
Confidence 4788999999999999999988753
No 435
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.61 E-value=0.059 Score=41.82 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=23.9
Q ss_pred eeeecCCCCcHHHHHHHHHHHHhhcCC
Q 021192 246 MAFLGNPGTGKTMVARILGRLLYMVGI 272 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~~~~~g~ 272 (316)
+.|-|+.|+||||.++.|+..+...|+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~ 29 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGK 29 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 467799999999999999999988664
No 436
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.60 E-value=0.067 Score=45.51 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=23.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
....+.+.||+|+|||++.+.|+....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445688999999999999999998864
No 437
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.51 E-value=0.015 Score=48.57 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=23.3
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.....+.+.||+|+|||||.++|+..+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 4556788999999999999999977553
No 438
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.51 E-value=0.041 Score=44.18 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=19.6
Q ss_pred CCceeeecCCCCcHHHHHHHHHHH
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~ 266 (316)
..-+++.|+||+|||+++..++..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 345788999999999999877654
No 439
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.47 E-value=0.044 Score=41.78 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.6
Q ss_pred CceeeecCCCCcHHHHHHHHHH
Q 021192 244 PHMAFLGNPGTGKTMVARILGR 265 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~ 265 (316)
..+++.|+||+|||+|.+.+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999999998876
No 440
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.42 E-value=0.23 Score=41.61 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=23.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+..-+++.|+||+|||+++..++.....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4455788999999999999999876654
No 441
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.42 E-value=0.061 Score=41.15 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=22.4
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
.....+++.|++|+|||++...+....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355689999999999999999887643
No 442
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.40 E-value=0.044 Score=46.21 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=21.8
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
...-+.++||||+|||+++..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 34457899999999999999998764
No 443
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.40 E-value=0.039 Score=47.89 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=19.6
Q ss_pred CCCceeeecCCCCcHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGR 265 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~ 265 (316)
...-+.++||||+|||+|++.++-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Confidence 344578899999999999997753
No 444
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.35 E-value=0.048 Score=46.36 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=21.0
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHH
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
..-+.++||||+|||+++..++...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456889999999999999988763
No 445
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.33 E-value=0.045 Score=40.35 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.4
Q ss_pred ceeeecCCCCcHHHHHHHHHHH
Q 021192 245 HMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~ 266 (316)
.+++.|++|+|||++...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988754
No 446
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.32 E-value=0.058 Score=41.50 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.2
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
.....+++.|++|+|||+|..++...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45567999999999999999988764
No 447
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.32 E-value=0.052 Score=40.30 Aligned_cols=21 Identities=48% Similarity=0.896 Sum_probs=18.8
Q ss_pred CceeeecCCCCcHHHHHHHHH
Q 021192 244 PHMAFLGNPGTGKTMVARILG 264 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la 264 (316)
..+++.|+||+|||+|.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 468999999999999998885
No 448
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.31 E-value=0.063 Score=41.11 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=21.7
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
....+++.|++|+|||+|...+...-
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34568999999999999999887654
No 449
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.26 E-value=0.083 Score=40.99 Aligned_cols=25 Identities=32% Similarity=0.491 Sum_probs=20.9
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHH
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
...+++.|++|+|||+|.+.+....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4578999999999999999886543
No 450
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.25 E-value=0.043 Score=40.80 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.1
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
....+++.|++|+|||++...+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999988764
No 451
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.23 E-value=0.051 Score=50.30 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=19.3
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..++.||||||||+++..+...+.
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHH
Confidence 478899999999998776666554
No 452
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.22 E-value=0.18 Score=44.30 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=23.4
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
....+.+.||+|+|||+|.+.|+....
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 445688999999999999999999764
No 453
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.21 E-value=0.055 Score=45.16 Aligned_cols=24 Identities=8% Similarity=-0.004 Sum_probs=19.8
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~ 268 (316)
.+.++||||+|||+|+..++....
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999887766654
No 454
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.21 E-value=0.052 Score=40.53 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.4
Q ss_pred CceeeecCCCCcHHHHHHHHHH
Q 021192 244 PHMAFLGNPGTGKTMVARILGR 265 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~ 265 (316)
..+.+.|+||+|||+|.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999875
No 455
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.20 E-value=0.13 Score=45.30 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
..+.++|+||+|||+|+..++.....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh
Confidence 45899999999999999988876553
No 456
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.15 E-value=0.072 Score=40.04 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=21.6
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGR 265 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~ 265 (316)
.....+++.|++|+|||++...+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999998865
No 457
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.12 E-value=0.053 Score=46.45 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
....+++.||+|+||||+.+++...+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 344688999999999999999988764
No 458
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.11 E-value=0.035 Score=49.90 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=22.2
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
...+++.||+|+||||+.+++.....
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34589999999999999999977664
No 459
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.10 E-value=0.055 Score=41.23 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=18.6
Q ss_pred eeeecCCCCcHHHHHHHHHHH
Q 021192 246 MAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 246 ~l~~GppGtGKT~la~~la~~ 266 (316)
++++|++|+|||++|+.++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 578899999999999999854
No 460
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.07 E-value=0.032 Score=44.47 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=20.8
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
...-+.+.|+.|+||||+++.|+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3445678899999999999999875
No 461
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.05 E-value=0.071 Score=40.84 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.0
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
.....+++.|++|+|||++...+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999988653
No 462
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.02 E-value=0.21 Score=42.39 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=24.1
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.....+.+.|+||+|||+++..++..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34566788999999999999999887754
No 463
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.02 E-value=0.059 Score=39.78 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=19.9
Q ss_pred CceeeecCCCCcHHHHHHHHHHH
Q 021192 244 PHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~ 266 (316)
..+++.|++|+|||++...+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999988754
No 464
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.98 E-value=0.064 Score=39.68 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.7
Q ss_pred CceeeecCCCCcHHHHHHHHHHH
Q 021192 244 PHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~ 266 (316)
..+++.|+||+|||++...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999887654
No 465
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.97 E-value=0.05 Score=40.77 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=20.3
Q ss_pred CCceeeecCCCCcHHHHHHHHHHH
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~ 266 (316)
...+++.|+||+|||+|.+.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999988643
No 466
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.96 E-value=0.064 Score=47.53 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=23.1
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
....+.+.||+|+|||||+|.|+....
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 445688999999999999999988763
No 467
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.95 E-value=0.051 Score=45.72 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=20.5
Q ss_pred CCceeeecCCCCcHHHHHHHHHHH
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~ 266 (316)
..-++++|+||+|||+++..++..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345788999999999999998875
No 468
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.92 E-value=0.09 Score=43.64 Aligned_cols=28 Identities=25% Similarity=0.193 Sum_probs=23.8
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
.+..+.+.|++|+||||+++.+|..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4456778899999999999999998875
No 469
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=92.91 E-value=0.2 Score=43.01 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=31.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhhcCCCCCCCeeeeccccc
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~~g~~~~~~~~~~~~~~~ 286 (316)
....+++.|++||||+.+|+++....... +.|+.++.+.+
T Consensus 151 ~~~~vli~GesGtGKe~lAr~ih~~s~r~-----~~fv~vnc~~~ 190 (368)
T 3dzd_A 151 SKAPVLITGESGTGKEIVARLIHRYSGRK-----GAFVDLNCASI 190 (368)
T ss_dssp SCSCEEEECCTTSSHHHHHHHHHHHHCCC-----SCEEEEESSSS
T ss_pred cchhheEEeCCCchHHHHHHHHHHhcccc-----CCcEEEEcccC
Confidence 34458999999999999999998877542 24888887654
No 470
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.88 E-value=0.052 Score=40.22 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=20.9
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHH
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
...+++.|++|+|||++...+...-
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3568999999999999998887543
No 471
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.85 E-value=0.076 Score=44.13 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=23.6
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
+..+.+.|++|+|||+++..+|..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 556778899999999999999988865
No 472
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.84 E-value=0.26 Score=41.89 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=22.8
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
...+.+.|+||+|||||..++...+..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 456889999999999999999886643
No 473
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.79 E-value=0.077 Score=40.50 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=21.4
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
.....+++.|++|+|||++...+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 34567899999999999999887654
No 474
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.79 E-value=0.055 Score=40.80 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=21.6
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
....+++.|++|+|||++...+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 45678999999999999998886543
No 475
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.77 E-value=0.053 Score=40.37 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=19.8
Q ss_pred CceeeecCCCCcHHHHHHHHHHH
Q 021192 244 PHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~ 266 (316)
..+++.|++|+|||++...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999888643
No 476
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.75 E-value=0.036 Score=43.16 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=21.3
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
.....+.+.|++|+|||+|.+++...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44567899999999999999888643
No 477
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.75 E-value=0.058 Score=40.66 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.5
Q ss_pred CCceeeecCCCCcHHHHHHHHHHH
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~ 266 (316)
...+++.|+||+|||+|..++...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999998753
No 478
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.75 E-value=0.07 Score=41.61 Aligned_cols=26 Identities=15% Similarity=0.094 Sum_probs=21.6
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
.....+++.|++|+|||+|...+...
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999888754
No 479
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.72 E-value=0.073 Score=41.83 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.3
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
...+++.|++|+|||++...++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45688999999999999999988753
No 480
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.70 E-value=0.085 Score=39.79 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=21.3
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
.....+++.|++|+|||++...+...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999888653
No 481
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.70 E-value=0.088 Score=42.62 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=22.6
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
....+++.|.+|+|||+++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 344567789999999999999998776
No 482
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.65 E-value=0.087 Score=38.77 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=20.9
Q ss_pred ceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 245 ~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
-.+++||.|+|||++..++.-.+..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4578999999999999999876643
No 483
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.61 E-value=0.075 Score=39.46 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=20.1
Q ss_pred CceeeecCCCCcHHHHHHHHHHHH
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~ 267 (316)
..+++.|++|+|||++...+...-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999998886543
No 484
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.61 E-value=0.056 Score=41.09 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=21.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
....+++.|++|+|||+|.+.+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999988764
No 485
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.61 E-value=0.06 Score=40.47 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=20.9
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
....+++.|+||+|||+|...+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999988643
No 486
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.59 E-value=0.069 Score=40.19 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=21.3
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
....+++.|++|+|||+|...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999988765
No 487
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.56 E-value=0.078 Score=39.39 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.0
Q ss_pred CCceeeecCCCCcHHHHHHHHHHHH
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~~ 267 (316)
...+++.|++|+|||++.+.+...-
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999887654
No 488
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.56 E-value=0.071 Score=40.35 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.2
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
....+++.|++|+|||+|...+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4457899999999999999988754
No 489
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.56 E-value=0.078 Score=39.79 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=20.9
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
....+++.|++|+|||++...+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999988653
No 490
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.53 E-value=0.081 Score=41.71 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=22.9
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
....+++.|++|+|||++...+.....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 346788999999999999999988764
No 491
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.52 E-value=0.08 Score=39.38 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=21.0
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
....+++.|++|+|||++...+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999888754
No 492
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.51 E-value=0.079 Score=40.60 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=19.9
Q ss_pred CCceeeecCCCCcHHHHHHHHHH
Q 021192 243 PPHMAFLGNPGTGKTMVARILGR 265 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~ 265 (316)
...+++.|+||+|||++.+.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999998875
No 493
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.49 E-value=0.079 Score=39.46 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.6
Q ss_pred CCCceeeecCCCCcHHHHHHHHHH
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGR 265 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~ 265 (316)
....+++.|++|+|||+|...+..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 446789999999999999988854
No 494
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.48 E-value=0.065 Score=43.83 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=20.6
Q ss_pred CceeeecCCCCcHHHHHHHHHHHH
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLL 267 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~ 267 (316)
..+.+.|+||+|||++..++....
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999986543
No 495
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.43 E-value=0.2 Score=43.05 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCCceeeecCCCCcHHHHHHHHHHHHhh
Q 021192 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (316)
Q Consensus 242 ~~~~~l~~GppGtGKT~la~~la~~~~~ 269 (316)
....+.++||||+|||++++.|++....
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 4567899999999999999999987754
No 496
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.40 E-value=0.053 Score=40.84 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=20.9
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGR 265 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~ 265 (316)
.....+++.|++|+|||+|...+..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3456789999999999999988854
No 497
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.40 E-value=0.072 Score=40.43 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=21.5
Q ss_pred CCCCceeeecCCCCcHHHHHHHHHHH
Q 021192 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 241 ~~~~~~l~~GppGtGKT~la~~la~~ 266 (316)
.....+++.|++|+|||++.+.+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999888643
No 498
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.38 E-value=0.076 Score=40.37 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=20.6
Q ss_pred CCceeeecCCCCcHHHHHHHHHHH
Q 021192 243 PPHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 243 ~~~~l~~GppGtGKT~la~~la~~ 266 (316)
...+++.|++|+|||+|.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999998763
No 499
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.38 E-value=0.084 Score=39.09 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=19.9
Q ss_pred CceeeecCCCCcHHHHHHHHHHH
Q 021192 244 PHMAFLGNPGTGKTMVARILGRL 266 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~ 266 (316)
..+++.|++|+|||++.+.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999988763
No 500
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.37 E-value=0.069 Score=47.43 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=22.4
Q ss_pred CceeeecCCCCcHHHHHHHHHHHHh
Q 021192 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (316)
Q Consensus 244 ~~~l~~GppGtGKT~la~~la~~~~ 268 (316)
..+.+.||+|+||||+.++|+....
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 6678899999999999999998764
Done!