Query 021193
Match_columns 316
No_of_seqs 217 out of 803
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 14:06:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.6 4.8E-16 1.7E-20 117.5 2.9 43 231-277 6-48 (63)
2 1gnf_A Transcription factor GA 99.6 1.1E-15 3.8E-20 109.0 3.5 38 231-269 3-40 (46)
3 2vut_I AREA, nitrogen regulato 99.5 6.1E-16 2.1E-20 108.9 1.2 36 233-269 2-37 (43)
4 4gat_A Nitrogen regulatory pro 99.5 2.1E-15 7.3E-20 114.8 1.5 45 229-277 6-50 (66)
5 2kae_A GATA-type transcription 99.5 3.3E-15 1.1E-19 115.3 2.1 43 231-276 7-49 (71)
6 4hc9_A Trans-acting T-cell-spe 99.4 9.5E-14 3.3E-18 115.5 2.4 39 230-269 57-95 (115)
7 4hc9_A Trans-acting T-cell-spe 99.2 7.1E-12 2.4E-16 104.2 2.2 37 231-268 4-40 (115)
8 1pft_A TFIIB, PFTFIIBN; N-term 73.5 1.2 3.9E-05 30.8 1.2 41 232-275 5-47 (50)
9 1dl6_A Transcription factor II 72.1 1.6 5.5E-05 31.6 1.7 41 232-275 11-53 (58)
10 3cw2_K Translation initiation 55.9 3.8 0.00013 34.8 1.2 30 233-263 104-133 (139)
11 3k7a_M Transcription initiatio 53.9 6.1 0.00021 37.2 2.4 43 232-275 21-65 (345)
12 1qyp_A RNA polymerase II; tran 52.6 2 6.7E-05 30.6 -0.9 35 232-266 15-55 (57)
13 2zjr_Z 50S ribosomal protein L 52.0 3.8 0.00013 30.1 0.5 27 229-265 27-53 (60)
14 2d74_B Translation initiation 51.6 4 0.00014 35.0 0.7 31 233-264 105-135 (148)
15 2apo_B Ribosome biogenesis pro 49.4 6.9 0.00024 29.0 1.6 49 232-299 6-54 (60)
16 2yrk_A Zinc finger homeobox pr 49.2 4.4 0.00015 29.7 0.5 20 247-266 6-25 (55)
17 1nee_A EIF-2-beta, probable tr 48.7 4 0.00014 34.6 0.2 30 233-263 103-132 (138)
18 2b0o_E UPLC1; arfgap, structur 43.8 6.6 0.00023 35.3 0.9 44 231-276 41-85 (301)
19 3v2d_5 50S ribosomal protein L 43.7 3.5 0.00012 30.3 -0.7 26 230-265 28-53 (60)
20 1k81_A EIF-2-beta, probable tr 43.7 1.6 5.4E-05 29.0 -2.4 30 234-264 2-31 (36)
21 2iqj_A Stromal membrane-associ 42.5 5.4 0.00018 33.5 0.1 45 231-277 26-71 (134)
22 2owa_A Arfgap-like finger doma 41.7 5.6 0.00019 33.7 0.1 50 231-282 35-85 (138)
23 3dwd_A ADP-ribosylation factor 38.6 9 0.00031 32.9 0.9 50 231-282 37-87 (147)
24 2crw_A ARF GAP 3, ADP-ribosyla 38.4 9.6 0.00033 32.7 1.0 46 231-278 28-74 (149)
25 2crr_A Stromal membrane-associ 35.3 18 0.00061 30.5 2.2 49 231-281 28-77 (141)
26 2p57_A GTPase-activating prote 33.2 6.5 0.00022 33.6 -0.9 45 231-277 36-81 (144)
27 3sub_A ADP-ribosylation factor 32.6 14 0.00046 32.4 1.0 48 232-281 22-70 (163)
28 3cng_A Nudix hydrolase; struct 31.9 12 0.00039 31.3 0.5 31 232-262 3-33 (189)
29 1tfi_A Transcriptional elongat 29.8 8.3 0.00028 27.2 -0.6 35 231-265 8-48 (50)
30 2g2k_A EIF-5, eukaryotic trans 28.5 7.1 0.00024 34.3 -1.5 33 233-265 97-130 (170)
31 1pqv_S STP-alpha, transcriptio 26.4 13 0.00045 34.8 -0.2 34 232-265 268-307 (309)
32 3po3_S Transcription elongatio 26.3 22 0.00076 30.9 1.3 35 231-265 136-176 (178)
33 2olm_A Nucleoporin-like protei 26.0 20 0.0007 30.1 1.0 45 231-277 24-68 (140)
34 2e9h_A EIF-5, eukaryotic trans 24.5 10 0.00036 32.8 -1.1 33 233-265 104-137 (157)
35 2aus_D NOP10, ribosome biogene 23.7 47 0.0016 24.5 2.4 49 232-299 5-53 (60)
36 1j2m_A CPI-17, 17-kDa PKC-pote 22.3 24 0.00084 28.5 0.7 16 38-53 51-66 (99)
37 3jue_A Arfgap with coiled-coil 22.1 25 0.00086 32.9 0.9 29 231-261 44-72 (368)
38 1u6t_A SH3 domain-binding glut 20.1 11 0.00037 31.0 -1.8 31 11-41 41-81 (121)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.58 E-value=4.8e-16 Score=117.50 Aligned_cols=43 Identities=40% Similarity=0.835 Sum_probs=38.0
Q ss_pred CCCccccccccCCCcccCCCCCChhhhhhhhhhhhcCCCCCCCCCCC
Q 021193 231 FQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPAC 277 (316)
Q Consensus 231 ~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~lp~yrp~~ 277 (316)
....|.||++++||+||+||+|+ +|||||||+|++++. +||..
T Consensus 6 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~---~RP~~ 48 (63)
T 3dfx_A 6 AGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI---NRPLT 48 (63)
T ss_dssp TTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS---CCCGG
T ss_pred CCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC---CCCcC
Confidence 45789999999999999999996 999999999999874 66653
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.56 E-value=1.1e-15 Score=109.05 Aligned_cols=38 Identities=39% Similarity=0.783 Sum_probs=34.9
Q ss_pred CCCccccccccCCCcccCCCCCChhhhhhhhhhhhcCCC
Q 021193 231 FQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRL 269 (316)
Q Consensus 231 ~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~ 269 (316)
..+.|.||++++||+||+||.|+ +|||||||||++++.
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQ 40 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCS
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCC
Confidence 45789999999999999999995 999999999998773
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.55 E-value=6.1e-16 Score=108.92 Aligned_cols=36 Identities=47% Similarity=0.979 Sum_probs=33.6
Q ss_pred CccccccccCCCcccCCCCCChhhhhhhhhhhhcCCC
Q 021193 233 RRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRL 269 (316)
Q Consensus 233 r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~ 269 (316)
+.|+||++++||+||+||+|+ +|||||||+|++++.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCC
Confidence 579999999999999999996 999999999998773
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.51 E-value=2.1e-15 Score=114.85 Aligned_cols=45 Identities=42% Similarity=0.789 Sum_probs=38.7
Q ss_pred CCCCCccccccccCCCcccCCCCCChhhhhhhhhhhhcCCCCCCCCCCC
Q 021193 229 GLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPAC 277 (316)
Q Consensus 229 ~~~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~lp~yrp~~ 277 (316)
.+..+.|+||++++||+||+||.|. +|||||||||++++. .||..
T Consensus 6 ~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~---~RP~~ 50 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV---VRPLS 50 (66)
T ss_dssp SSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCS---CCCGG
T ss_pred CCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCC---CCchh
Confidence 3467999999999999999999995 999999999998663 46654
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.51 E-value=3.3e-15 Score=115.34 Aligned_cols=43 Identities=28% Similarity=0.511 Sum_probs=35.4
Q ss_pred CCCccccccccCCCcccCCCCCChhhhhhhhhhhhcCCCCCCCCCC
Q 021193 231 FQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPA 276 (316)
Q Consensus 231 ~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~lp~yrp~ 276 (316)
....|+||++++||+||+|+.+..+|||||||||++++ .+||.
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~---~~RP~ 49 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYN---KTRPV 49 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHH---SCCCT
T ss_pred CCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhC---CCCCc
Confidence 45899999999999999965554599999999999876 45664
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.38 E-value=9.5e-14 Score=115.49 Aligned_cols=39 Identities=38% Similarity=0.833 Sum_probs=35.8
Q ss_pred CCCCccccccccCCCcccCCCCCChhhhhhhhhhhhcCCC
Q 021193 230 LFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRL 269 (316)
Q Consensus 230 ~~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~ 269 (316)
.....|+||+++.||+||+||+| ++|||||||||++++.
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~ 95 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNI 95 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSS
T ss_pred cccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCC
Confidence 34589999999999999999999 8999999999998774
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.16 E-value=7.1e-12 Score=104.22 Aligned_cols=37 Identities=41% Similarity=0.874 Sum_probs=32.9
Q ss_pred CCCccccccccCCCcccCCCCCChhhhhhhhhhhhcCC
Q 021193 231 FQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGR 268 (316)
Q Consensus 231 ~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~ 268 (316)
..+.|.||++++||+||+|+.| .+|||||||||+.++
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G 40 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNG 40 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHS
T ss_pred CCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhcc
Confidence 4689999999999999999999 799999999999654
No 8
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=73.48 E-value=1.2 Score=30.85 Aligned_cols=41 Identities=24% Similarity=0.579 Sum_probs=27.5
Q ss_pred CCccccccccCCCcccCCCCCChhhhhhhhhhhhcCCCC--CCCCC
Q 021193 232 QRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLF--PEYRP 275 (316)
Q Consensus 232 ~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~l--p~yrp 275 (316)
...|.+|+.. ++-.....| ...|..||+-|....+- |+||.
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~~e~~id~~~ewr~ 47 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG-EIVCAKCGYVIEENIIDMGPEWRA 47 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT-EEEESSSCCBCCCCCCCCCSSSSC
T ss_pred cEeCcCCCCc--ceEEcCCCC-eEECcccCCcccccccccCCcccc
Confidence 3579999773 333333345 78999999988765544 67764
No 9
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=72.13 E-value=1.6 Score=31.60 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=28.5
Q ss_pred CCccccccccCCCcccCCCCCChhhhhhhhhhhhcCCC--CCCCCC
Q 021193 232 QRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRL--FPEYRP 275 (316)
Q Consensus 232 ~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~--lp~yrp 275 (316)
...|.+|+... .-.....| .+.|..||+-+.-+.+ -|+||.
T Consensus 11 ~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl~e~~iD~gpEWR~ 53 (58)
T 1dl6_A 11 RVTCPNHPDAI--LVEDYRAG-DMICPECGLVVGDRVIDVGSEWRT 53 (58)
T ss_dssp CCSBTTBSSSC--CEECSSSC-CEECTTTCCEECCSCCCCCCSCCC
T ss_pred cccCcCCCCCc--eeEeCCCC-eEEeCCCCCEEeccccccCCcccc
Confidence 35799998754 43344456 7999999998875443 377774
No 10
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=55.85 E-value=3.8 Score=34.78 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=21.4
Q ss_pred CccccccccCCCcccCCCCCChhhhhhhhhh
Q 021193 233 RRCSHCQTQKTPQWRTGPLGPKTLCNACGVR 263 (316)
Q Consensus 233 r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~ 263 (316)
-.|..|+..+|-.-+.+..= -.-|+|||-.
T Consensus 104 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSW-YIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTT-TSSCCC----
T ss_pred eECCCCCCcCcEEEEeCCeE-EEEecCCCCC
Confidence 67999999999999875333 5689999964
No 11
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=53.85 E-value=6.1 Score=37.15 Aligned_cols=43 Identities=19% Similarity=0.396 Sum_probs=25.7
Q ss_pred CCccccccccCCCcccCCCCCChhhhhhhhhhhhcCCCC--CCCCC
Q 021193 232 QRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLF--PEYRP 275 (316)
Q Consensus 232 ~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~l--p~yrp 275 (316)
...|.+||...+-.-..-..| .+.|..||+-..-..+. ||||.
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~Vl~e~~id~~~EwR~ 65 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLVLSDKLVDTRSEWRT 65 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSC-SCCCSSSCCCCCCCCCCTTCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCC-CEecCCCCeEcccccccCCccccc
Confidence 457888887643222233456 77888888866544333 56653
No 12
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=52.56 E-value=2 Score=30.57 Aligned_cols=35 Identities=26% Similarity=0.571 Sum_probs=25.9
Q ss_pred CCccccccccC----CCcccCCCCCCh--hhhhhhhhhhhc
Q 021193 232 QRRCSHCQTQK----TPQWRTGPLGPK--TLCNACGVRYKS 266 (316)
Q Consensus 232 ~r~C~~Cgt~~----TP~WR~GP~G~~--~LCNACGl~yk~ 266 (316)
...|.+||-.. +-|||...++.. +.|..||-+|+-
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 36799999854 457888766632 599999998863
No 13
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=51.97 E-value=3.8 Score=30.13 Aligned_cols=27 Identities=26% Similarity=0.743 Sum_probs=19.8
Q ss_pred CCCCCccccccccCCCcccCCCCCChhhhhhhhhhhh
Q 021193 229 GLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYK 265 (316)
Q Consensus 229 ~~~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk 265 (316)
....-.|.+||..+- ++.+|-.|| +|+
T Consensus 27 ~p~l~~c~~cG~~~~---------pH~vc~~CG-~Y~ 53 (60)
T 2zjr_Z 27 APNLTECPQCHGKKL---------SHHICPNCG-YYD 53 (60)
T ss_dssp CCCCEECTTTCCEEC---------TTBCCTTTC-BSS
T ss_pred CCCceECCCCCCEeC---------CceEcCCCC-cCC
Confidence 345688999997743 378999999 444
No 14
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=51.63 E-value=4 Score=35.05 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=24.4
Q ss_pred CccccccccCCCcccCCCCCChhhhhhhhhhh
Q 021193 233 RRCSHCQTQKTPQWRTGPLGPKTLCNACGVRY 264 (316)
Q Consensus 233 r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~y 264 (316)
-.|..|+..+|-.-+.+..- -.-|+|||-..
T Consensus 105 VlC~~C~sPdT~L~k~~r~~-~l~C~ACGa~~ 135 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFH-FLKCEACGAET 135 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSB-CCCCSSSCCCC
T ss_pred EECCCCCCcCcEEEEeCCEE-EEEecCCCCCc
Confidence 46999999999999865322 46899999754
No 15
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=49.44 E-value=6.9 Score=28.97 Aligned_cols=49 Identities=24% Similarity=0.523 Sum_probs=33.8
Q ss_pred CCccccccccCCCcccCCCCCChhhhhhhhhhhhcCCCCCCCCCCCCCCccccccchhhHHHHHHHHh
Q 021193 232 QRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHSNSHRKVLEMRRK 299 (316)
Q Consensus 232 ~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~lp~yrp~~spt~~~~~hsn~h~kvle~r~q 299 (316)
.+.|..|++-.- +..|-.||.... .+..+.|+.+-....+|-.|+.|-.
T Consensus 6 mr~C~~CgvYTL----------k~~CP~CG~~T~---------~~hParfSp~Dky~~yR~~~kk~~~ 54 (60)
T 2apo_B 6 MKKCPKCGLYTL----------KEICPKCGEKTV---------IPKPPKFSLEDRWGKYRRMLKRALK 54 (60)
T ss_dssp CEECTTTCCEES----------SSBCSSSCSBCB---------CCCCCCCCTTCTTHHHHHHHHHHHH
T ss_pred ceeCCCCCCEec----------cccCcCCCCcCC---------CCCCCCCCCCcchHHHHHHHHHHhc
Confidence 477888876554 457888887544 3445678888777788866666543
No 16
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=49.17 E-value=4.4 Score=29.72 Aligned_cols=20 Identities=40% Similarity=0.876 Sum_probs=17.1
Q ss_pred cCCCCCChhhhhhhhhhhhc
Q 021193 247 RTGPLGPKTLCNACGVRYKS 266 (316)
Q Consensus 247 R~GP~G~~~LCNACGl~yk~ 266 (316)
..||+||++-|.-||+.|-.
T Consensus 6 ~~~~~~P~~eC~lC~vkYs~ 25 (55)
T 2yrk_A 6 SGGTDGTKPECTLCGVKYSA 25 (55)
T ss_dssp CCCCCCCCSCCTTTTCCCCS
T ss_pred CCCCCCCCccccccCccccc
Confidence 35789999999999999873
No 17
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=48.67 E-value=4 Score=34.63 Aligned_cols=30 Identities=30% Similarity=0.680 Sum_probs=23.9
Q ss_pred CccccccccCCCcccCCCCCChhhhhhhhhh
Q 021193 233 RRCSHCQTQKTPQWRTGPLGPKTLCNACGVR 263 (316)
Q Consensus 233 r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~ 263 (316)
-.|..|+..+|-.-+.+..= -.-|+|||-.
T Consensus 103 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~ 132 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRIS-LLKCEACGAK 132 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTT-EEECSTTSCC
T ss_pred EECCCCCCcCcEEEEcCCeE-EEEccCCCCC
Confidence 46999999999999865332 4689999964
No 18
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=43.75 E-value=6.6 Score=35.27 Aligned_cols=44 Identities=23% Similarity=0.529 Sum_probs=31.5
Q ss_pred CCCccccccccCCCcccCCCCCChhhhhhhhhhhh-cCCCCCCCCCC
Q 021193 231 FQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYK-SGRLFPEYRPA 276 (316)
Q Consensus 231 ~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk-~~~~lp~yrp~ 276 (316)
+...|..|+... |.|-.-..| ..+|-.|--.-+ -|..+...|..
T Consensus 41 ~n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~lg~~is~v~sl 85 (301)
T 2b0o_E 41 GNSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHRELGVRFSRMQSL 85 (301)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEET
T ss_pred CCCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHHhhCCCccccccc
Confidence 358999999975 999999999 899999944333 24344444443
No 19
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=43.75 E-value=3.5 Score=30.35 Aligned_cols=26 Identities=35% Similarity=0.846 Sum_probs=19.2
Q ss_pred CCCCccccccccCCCcccCCCCCChhhhhhhhhhhh
Q 021193 230 LFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYK 265 (316)
Q Consensus 230 ~~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk 265 (316)
...-.|.+||..+- ++.+|-.|| +|+
T Consensus 28 p~l~~c~~cGe~~~---------~H~vc~~CG-~Y~ 53 (60)
T 3v2d_5 28 PTLVPCPECKAMKP---------PHTVCPECG-YYA 53 (60)
T ss_dssp CCCEECTTTCCEEC---------TTSCCTTTC-EET
T ss_pred CceeECCCCCCeec---------ceEEcCCCC-cCC
Confidence 45688999998543 367899999 444
No 20
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=43.70 E-value=1.6 Score=29.02 Aligned_cols=30 Identities=27% Similarity=0.526 Sum_probs=21.6
Q ss_pred ccccccccCCCcccCCCCCChhhhhhhhhhh
Q 021193 234 RCSHCQTQKTPQWRTGPLGPKTLCNACGVRY 264 (316)
Q Consensus 234 ~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~y 264 (316)
.|..|+..+|-.=+++..- -.-|+|||-..
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCCcc
Confidence 4889999999888754221 23699999754
No 21
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=42.50 E-value=5.4 Score=33.51 Aligned_cols=45 Identities=20% Similarity=0.541 Sum_probs=32.9
Q ss_pred CCCccccccccCCCcccCCCCCChhhhhhhhhhhhc-CCCCCCCCCCC
Q 021193 231 FQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKS-GRLFPEYRPAC 277 (316)
Q Consensus 231 ~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~-~~~lp~yrp~~ 277 (316)
+++.|.+||... |.|-.=..| -.+|-.|.-..+. |..+...|...
T Consensus 26 ~N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~lG~hiS~VkSl~ 71 (134)
T 2iqj_A 26 DNKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVN 71 (134)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEETT
T ss_pred CCCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhcCCCCCCceeecc
Confidence 358999999875 999999999 8899999665554 43344444443
No 22
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=41.68 E-value=5.6 Score=33.65 Aligned_cols=50 Identities=20% Similarity=0.489 Sum_probs=36.7
Q ss_pred CCCccccccccCCCcccCCCCCChhhhhhhhhhhhc-CCCCCCCCCCCCCCcc
Q 021193 231 FQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKS-GRLFPEYRPACSPTFS 282 (316)
Q Consensus 231 ~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~-~~~lp~yrp~~spt~~ 282 (316)
+.+.|..||... |.|-.=..| -.+|-.|.-..+. |..+...|...--+|.
T Consensus 35 ~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~lD~w~ 85 (138)
T 2owa_A 35 ENRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRKMGVHISFVRSSDLDKFT 85 (138)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHTTCTTTCCEEETTTSCCC
T ss_pred CCCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhCCCCCCCeeeecCcCcCC
Confidence 358999999875 999999999 8999999776665 4445556655444443
No 23
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=38.64 E-value=9 Score=32.94 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=35.2
Q ss_pred CCCccccccccCCCcccCCCCCChhhhhhhhhhhhc-CCCCCCCCCCCCCCcc
Q 021193 231 FQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKS-GRLFPEYRPACSPTFS 282 (316)
Q Consensus 231 ~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~-~~~lp~yrp~~spt~~ 282 (316)
+++.|..|+... |.|-.=..| -.+|-.|.-.-+. |..+...|...--+|.
T Consensus 37 ~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~LG~hISkVkSl~LD~W~ 87 (147)
T 3dwd_A 37 ENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGLGVHLSFVRSVTMDKWK 87 (147)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEESCC--CC
T ss_pred CCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcCCCCCCccccccccCCC
Confidence 358999999875 999999999 8999999765554 4444555554444443
No 24
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.37 E-value=9.6 Score=32.67 Aligned_cols=46 Identities=24% Similarity=0.488 Sum_probs=34.4
Q ss_pred CCCccccccccCCCcccCCCCCChhhhhhhhhhhhc-CCCCCCCCCCCC
Q 021193 231 FQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKS-GRLFPEYRPACS 278 (316)
Q Consensus 231 ~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~-~~~lp~yrp~~s 278 (316)
+++.|.+|+.. -|.|-.=..| -.+|-.|.-..+. |..+...|...-
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~L 74 (149)
T 2crw_A 28 TNKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSLGVHLSFIRSTEL 74 (149)
T ss_dssp TTSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHHCTTTCCEECSSS
T ss_pred CCCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccCCCCCCeeecccc
Confidence 45899999976 5999999999 8999999765554 544555555443
No 25
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.30 E-value=18 Score=30.55 Aligned_cols=49 Identities=16% Similarity=0.499 Sum_probs=35.1
Q ss_pred CCCccccccccCCCcccCCCCCChhhhhhhhhhhhc-CCCCCCCCCCCCCCc
Q 021193 231 FQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKS-GRLFPEYRPACSPTF 281 (316)
Q Consensus 231 ~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~-~~~lp~yrp~~spt~ 281 (316)
+.+.|.+|+.. -|.|-.=..| -.+|-.|.-..+. |..+...|....-+|
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VkSl~ld~w 77 (141)
T 2crr_A 28 DNKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNLDQW 77 (141)
T ss_dssp GGSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHHCTTTCCCBCSSSSCC
T ss_pred cCCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcCCCCCCeeeECCCCCC
Confidence 35899999986 5999999999 8899999665554 444555555444433
No 26
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=33.17 E-value=6.5 Score=33.63 Aligned_cols=45 Identities=24% Similarity=0.513 Sum_probs=34.1
Q ss_pred CCCccccccccCCCcccCCCCCChhhhhhhhhhhhc-CCCCCCCCCCC
Q 021193 231 FQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKS-GRLFPEYRPAC 277 (316)
Q Consensus 231 ~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~-~~~lp~yrp~~ 277 (316)
+++.|.+||... |.|-.=..| ..+|-.|.-..+. |..+..+|...
T Consensus 36 ~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hIS~VrSl~ 81 (144)
T 2p57_A 36 TNKACFDCGAKN-PSWASITYG-VFLCIDCSGVHRSLGVHLSFIRSTE 81 (144)
T ss_dssp GGGBCTTTCCBS-CCEEEGGGT-EEECHHHHHHHHHHCTTTCCEEESS
T ss_pred CCCcCCCCcCCC-CCeEEeccC-EEEhhhchHHHcCCCCCCCeeeecc
Confidence 358999999865 999988889 8899999776664 54455555543
No 27
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=32.59 E-value=14 Score=32.38 Aligned_cols=48 Identities=25% Similarity=0.484 Sum_probs=34.0
Q ss_pred CCccccccccCCCcccCCCCCChhhhhhhhhhhhc-CCCCCCCCCCCCCCc
Q 021193 232 QRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKS-GRLFPEYRPACSPTF 281 (316)
Q Consensus 232 ~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~-~~~lp~yrp~~spt~ 281 (316)
.+.|..|+.. -|.|-.=..| -.+|-.|.-.-+. |..+...|...--+|
T Consensus 22 N~~CaDCga~-~P~WaS~nlG-vflCi~CSGiHR~LG~hISkVKSltLD~W 70 (163)
T 3sub_A 22 NNKCFDCGIS-NPDWVSVNHG-IFLCINCSGVHRSLGVHISIVRSIKMDIF 70 (163)
T ss_dssp GGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHTCTTTCCEEETTTCCC
T ss_pred CCccccCCCC-CCCeEEecCC-eeEHHhhhHHhcCCCCCCCeeeeccccCc
Confidence 4799999996 5999998899 8999999554443 444445555444443
No 28
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=31.90 E-value=12 Score=31.28 Aligned_cols=31 Identities=23% Similarity=0.541 Sum_probs=26.3
Q ss_pred CCccccccccCCCcccCCCCCChhhhhhhhh
Q 021193 232 QRRCSHCQTQKTPQWRTGPLGPKTLCNACGV 262 (316)
Q Consensus 232 ~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl 262 (316)
.+.|..||...+.....|..+....|-.||.
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred cccCchhCCccccccccCCCCcceECCCCCC
Confidence 4789999999988777787877789999993
No 29
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=29.85 E-value=8.3 Score=27.15 Aligned_cols=35 Identities=29% Similarity=0.586 Sum_probs=24.9
Q ss_pred CCCccccccccCCC----cccCCCCCCh--hhhhhhhhhhh
Q 021193 231 FQRRCSHCQTQKTP----QWRTGPLGPK--TLCNACGVRYK 265 (316)
Q Consensus 231 ~~r~C~~Cgt~~TP----~WR~GP~G~~--~LCNACGl~yk 265 (316)
....|..|+-.+.- |=|...+|-. +.|..||-+|+
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred CccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 34689999987643 3366666633 48999998886
No 30
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=28.50 E-value=7.1 Score=34.27 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=23.9
Q ss_pred CccccccccCCCcccCCCCC-Chhhhhhhhhhhh
Q 021193 233 RRCSHCQTQKTPQWRTGPLG-PKTLCNACGVRYK 265 (316)
Q Consensus 233 r~C~~Cgt~~TP~WR~GP~G-~~~LCNACGl~yk 265 (316)
-.|..|+..+|-+-+....+ --.-|+|||-..-
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 130 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCccc
Confidence 46999999999998832222 1357999997654
No 31
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=26.45 E-value=13 Score=34.81 Aligned_cols=34 Identities=29% Similarity=0.699 Sum_probs=25.0
Q ss_pred CCccccccccCCCcc----cCCCCCCh--hhhhhhhhhhh
Q 021193 232 QRRCSHCQTQKTPQW----RTGPLGPK--TLCNACGVRYK 265 (316)
Q Consensus 232 ~r~C~~Cgt~~TP~W----R~GP~G~~--~LCNACGl~yk 265 (316)
...|..||-.+.-.| |...+|-. +.|..||-+|+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 458999998875444 66655532 59999999987
No 32
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=26.33 E-value=22 Score=30.88 Aligned_cols=35 Identities=31% Similarity=0.593 Sum_probs=24.1
Q ss_pred CCCccccccccCC---C-cccCCCCCC--hhhhhhhhhhhh
Q 021193 231 FQRRCSHCQTQKT---P-QWRTGPLGP--KTLCNACGVRYK 265 (316)
Q Consensus 231 ~~r~C~~Cgt~~T---P-~WR~GP~G~--~~LCNACGl~yk 265 (316)
....|..||-.+. . |=|.+.+|- -+.|..||-+|+
T Consensus 136 ~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 136 DRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 3568999998763 2 225554442 248999999987
No 33
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=26.03 E-value=20 Score=30.14 Aligned_cols=45 Identities=16% Similarity=0.444 Sum_probs=32.6
Q ss_pred CCCccccccccCCCcccCCCCCChhhhhhhhhhhhcCCCCCCCCCCC
Q 021193 231 FQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPAC 277 (316)
Q Consensus 231 ~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~lp~yrp~~ 277 (316)
+++.|.+||.. -|.|-.=..| -.+|-.|.-..+.-+.+-..|...
T Consensus 24 ~N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~LG~~s~VrSl~ 68 (140)
T 2olm_A 24 HNRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRGLNPPHRVKSIS 68 (140)
T ss_dssp GGGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTTSSSCCCEEETT
T ss_pred CCCcCCCCCCC-CCCceeeccC-EEEchhccchhccCCCcceeeecC
Confidence 35899999986 6999999999 889999976655433334444433
No 34
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.51 E-value=10 Score=32.79 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=23.7
Q ss_pred CccccccccCCCcccCCCCC-Chhhhhhhhhhhh
Q 021193 233 RRCSHCQTQKTPQWRTGPLG-PKTLCNACGVRYK 265 (316)
Q Consensus 233 r~C~~Cgt~~TP~WR~GP~G-~~~LCNACGl~yk 265 (316)
-.|..|+..+|-+-+....+ --.-|+|||-..-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~ 137 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 137 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCCCc
Confidence 56999999999998721122 2357999997544
No 35
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=23.66 E-value=47 Score=24.54 Aligned_cols=49 Identities=29% Similarity=0.501 Sum_probs=31.5
Q ss_pred CCccccccccCCCcccCCCCCChhhhhhhhhhhhcCCCCCCCCCCCCCCccccccchhhHHHHHHHHh
Q 021193 232 QRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHSNSHRKVLEMRRK 299 (316)
Q Consensus 232 ~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~lp~yrp~~spt~~~~~hsn~h~kvle~r~q 299 (316)
.+.|..||+-.- +..|-.||..... +..+.|+..-....+|-.|+.|-.
T Consensus 5 mr~C~~Cg~YTL----------k~~CP~CG~~t~~---------ahParfSP~Dky~~yR~~lKk~~~ 53 (60)
T 2aus_D 5 IRKCPKCGRYTL----------KETCPVCGEKTKV---------AHPPRFSPEDPYGEYRRRLKRELL 53 (60)
T ss_dssp CEECTTTCCEES----------SSBCTTTCSBCEE---------SSCCCCCSCCTTHHHHHHHHHHHT
T ss_pred ceECCCCCCEEc----------cccCcCCCCccCC---------CCCCCCCCCCchHHHHHHHHHHhc
Confidence 467888865432 3467778875543 334577777777788866666544
No 36
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=22.25 E-value=24 Score=28.53 Aligned_cols=16 Identities=19% Similarity=0.661 Sum_probs=13.7
Q ss_pred CCCcccccccCCCCCC
Q 021193 38 NEDFSVDDLLDFSNGD 53 (316)
Q Consensus 38 ~ddF~VDDLLDfsn~~ 53 (316)
.+++-||||||++.++
T Consensus 51 p~eIDiDeLLDl~sde 66 (99)
T 1j2m_A 51 PDEVNIDELLELESEE 66 (99)
T ss_dssp CSSCCSHHHHCCTTTT
T ss_pred CcccCHHHHhcCCcHH
Confidence 5588999999998875
No 37
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=22.06 E-value=25 Score=32.94 Aligned_cols=29 Identities=34% Similarity=0.879 Sum_probs=25.6
Q ss_pred CCCccccccccCCCcccCCCCCChhhhhhhh
Q 021193 231 FQRRCSHCQTQKTPQWRTGPLGPKTLCNACG 261 (316)
Q Consensus 231 ~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACG 261 (316)
+.+.|..|+.. -|.|-.=..| -.+|-.|.
T Consensus 44 ~n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~ 72 (368)
T 3jue_A 44 GNAQCCDCREP-APEWASINLG-VTLCIQCS 72 (368)
T ss_dssp TTTBCTTTCCB-SCCEEETTTT-EEECHHHH
T ss_pred CcCcCCCCCCC-CCCeEEecCC-eEEcHhHH
Confidence 46899999986 5999999999 89999995
No 38
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=20.10 E-value=11 Score=31.00 Aligned_cols=31 Identities=13% Similarity=0.092 Sum_probs=22.5
Q ss_pred cchhhhHHhhhh----------hcccccccccccCCCCCCc
Q 021193 11 KPSLRRELSCCL----------KSTQQVFFDDIPCVSNEDF 41 (316)
Q Consensus 11 k~s~r~e~~~~~----------k~~~~~~~~~~~~~~~ddF 41 (316)
....|.||..-. .+.||.|+++-.+|+.|||
T Consensus 41 d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~iGG~Dd~ 81 (121)
T 1u6t_A 41 NEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGDYDAF 81 (121)
T ss_dssp CHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEEEEHHHH
T ss_pred CHHHHHHHHHhccccccccCCCcCCCEEEECCEEEechHHH
Confidence 356788886332 2579999999999987654
Done!