Query 021194
Match_columns 316
No_of_seqs 286 out of 1487
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 14:07:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vi6_A Homeobox protein nanog; 99.7 1.4E-18 4.7E-23 128.1 3.9 61 56-116 2-62 (62)
2 2h1k_A IPF-1, pancreatic and d 99.7 2E-18 6.9E-23 127.7 4.7 61 56-116 2-62 (63)
3 2da3_A Alpha-fetoprotein enhan 99.7 2.2E-18 7.4E-23 132.5 5.0 62 55-116 15-76 (80)
4 2cue_A Paired box protein PAX6 99.7 4.2E-18 1.5E-22 131.7 6.6 66 54-119 4-69 (80)
5 2dmt_A Homeobox protein BARH-l 99.7 3E-18 1E-22 132.5 5.7 62 55-116 15-76 (80)
6 2cra_A Homeobox protein HOX-B1 99.7 2.2E-18 7.4E-23 130.0 4.5 62 55-116 5-66 (70)
7 2dmu_A Homeobox protein goosec 99.7 3.5E-18 1.2E-22 128.7 5.4 62 55-116 5-66 (70)
8 2dmq_A LIM/homeobox protein LH 99.7 3.5E-18 1.2E-22 131.7 5.0 64 55-118 5-68 (80)
9 2e1o_A Homeobox protein PRH; D 99.7 4.5E-18 1.5E-22 128.3 5.4 62 55-116 5-66 (70)
10 1nk2_P Homeobox protein VND; h 99.7 5.4E-18 1.8E-22 130.2 5.5 63 57-119 9-71 (77)
11 2kt0_A Nanog, homeobox protein 99.7 5.4E-18 1.9E-22 131.8 5.5 62 55-116 20-81 (84)
12 1puf_A HOX-1.7, homeobox prote 99.7 1.1E-17 3.6E-22 128.5 7.1 63 55-117 11-73 (77)
13 2da2_A Alpha-fetoprotein enhan 99.7 3.8E-18 1.3E-22 128.4 4.4 62 55-116 5-66 (70)
14 2dms_A Homeobox protein OTX2; 99.7 6.4E-18 2.2E-22 130.5 5.2 63 55-117 5-67 (80)
15 2djn_A Homeobox protein DLX-5; 99.7 4E-18 1.4E-22 128.6 3.9 63 54-116 4-66 (70)
16 2hdd_A Protein (engrailed home 99.7 6.1E-18 2.1E-22 124.2 4.4 58 57-114 3-60 (61)
17 3a01_A Homeodomain-containing 99.7 9.4E-18 3.2E-22 133.7 5.7 65 56-120 16-80 (93)
18 2da1_A Alpha-fetoprotein enhan 99.7 4.8E-18 1.7E-22 127.8 3.9 62 55-116 5-66 (70)
19 1ig7_A Homeotic protein MSX-1; 99.7 8.2E-18 2.8E-22 122.1 4.9 57 58-114 1-57 (58)
20 1wh5_A ZF-HD homeobox family p 99.7 8E-18 2.7E-22 130.9 4.9 60 55-114 15-78 (80)
21 2ecc_A Homeobox and leucine zi 99.7 6.8E-18 2.3E-22 130.9 4.3 59 59-117 5-63 (76)
22 1zq3_P PRD-4, homeotic bicoid 99.7 1.5E-17 5E-22 124.9 5.3 61 57-117 2-62 (68)
23 1bw5_A ISL-1HD, insulin gene e 99.7 7.1E-18 2.4E-22 125.7 3.6 60 57-116 3-62 (66)
24 1yz8_P Pituitary homeobox 2; D 99.7 4.5E-18 1.5E-22 127.6 2.4 62 56-117 2-63 (68)
25 1ahd_P Antennapedia protein mu 99.7 9.8E-18 3.4E-22 126.0 3.9 60 58-117 3-62 (68)
26 2l7z_A Homeobox protein HOX-A1 99.7 2.2E-17 7.6E-22 125.7 5.8 61 56-116 6-66 (73)
27 2da5_A Zinc fingers and homeob 99.7 1.6E-17 5.4E-22 127.3 4.9 59 58-116 8-66 (75)
28 1jgg_A Segmentation protein EV 99.7 1.5E-17 5.1E-22 121.8 4.6 58 58-115 2-59 (60)
29 1b8i_A Ultrabithorax, protein 99.7 1.1E-17 3.9E-22 129.8 4.0 62 55-116 18-79 (81)
30 1fjl_A Paired protein; DNA-bin 99.7 2.2E-17 7.7E-22 127.7 5.6 61 56-116 17-77 (81)
31 2m0c_A Homeobox protein arista 99.7 1.8E-17 6.2E-22 125.7 5.0 63 55-117 7-69 (75)
32 1uhs_A HOP, homeodomain only p 99.7 2E-17 6.7E-22 125.4 5.1 58 59-116 3-61 (72)
33 3a02_A Homeobox protein arista 99.7 1.4E-17 4.9E-22 121.8 3.9 57 60-116 2-58 (60)
34 3rkq_A Homeobox protein NKX-2. 99.7 2.2E-17 7.5E-22 119.2 4.7 56 58-113 3-58 (58)
35 2k40_A Homeobox expressed in E 99.7 1E-17 3.4E-22 125.2 3.0 61 58-118 2-62 (67)
36 1ftt_A TTF-1 HD, thyroid trans 99.7 2.2E-17 7.6E-22 124.0 4.8 60 58-117 3-62 (68)
37 2da4_A Hypothetical protein DK 99.7 1.1E-17 3.7E-22 129.2 3.1 61 56-116 7-71 (80)
38 2r5y_A Homeotic protein sex co 99.7 1.8E-17 6.1E-22 130.3 4.3 62 55-116 26-87 (88)
39 2hi3_A Homeodomain-only protei 99.7 3E-17 1E-21 124.8 5.4 59 58-116 3-62 (73)
40 3a03_A T-cell leukemia homeobo 99.7 2.2E-17 7.5E-22 119.6 4.3 54 62-115 2-55 (56)
41 3nar_A ZHX1, zinc fingers and 99.7 3.5E-17 1.2E-21 130.8 5.5 63 56-118 24-86 (96)
42 1wh7_A ZF-HD homeobox family p 99.7 2.5E-17 8.4E-22 128.4 3.9 59 55-114 15-78 (80)
43 1akh_A Protein (mating-type pr 99.7 2.7E-17 9.2E-22 120.5 3.7 57 57-113 5-61 (61)
44 1b72_A Protein (homeobox prote 99.7 3.4E-17 1.2E-21 131.0 4.5 63 55-117 32-94 (97)
45 2ly9_A Zinc fingers and homeob 99.7 5.1E-17 1.8E-21 123.4 4.7 61 57-117 6-66 (74)
46 2dn0_A Zinc fingers and homeob 99.7 3.7E-17 1.3E-21 125.2 3.9 60 58-117 9-68 (76)
47 1x2n_A Homeobox protein pknox1 99.7 7.2E-17 2.5E-21 122.4 5.4 63 55-117 5-70 (73)
48 2ecb_A Zinc fingers and homeob 99.7 4.3E-17 1.5E-21 129.8 4.1 58 60-117 14-71 (89)
49 1k61_A Mating-type protein alp 99.6 7.9E-17 2.7E-21 117.7 4.5 56 60-115 1-59 (60)
50 1puf_B PRE-B-cell leukemia tra 99.6 7.6E-17 2.6E-21 122.3 4.4 61 58-118 2-65 (73)
51 2cqx_A LAG1 longevity assuranc 99.6 3.3E-17 1.1E-21 125.1 1.7 58 59-116 10-68 (72)
52 1du6_A PBX1, homeobox protein 99.6 6.9E-17 2.4E-21 119.5 3.1 58 57-114 3-63 (64)
53 1b72_B Protein (PBX1); homeodo 99.6 1.6E-16 5.4E-21 124.2 5.3 61 58-118 2-65 (87)
54 2cuf_A FLJ21616 protein; homeo 99.6 1.7E-16 5.8E-21 126.5 5.4 63 55-117 5-82 (95)
55 2dmp_A Zinc fingers and homeob 99.6 2.1E-16 7.1E-21 125.0 5.7 58 59-116 15-72 (89)
56 1le8_B Mating-type protein alp 99.6 1.4E-16 4.6E-21 124.3 3.9 63 58-120 3-68 (83)
57 2dmn_A Homeobox protein TGIF2L 99.6 2.6E-16 8.8E-21 122.9 5.3 64 55-118 5-71 (83)
58 2l9r_A Homeobox protein NKX-3. 99.6 5.6E-17 1.9E-21 123.3 1.1 55 64-118 11-65 (69)
59 1mnm_C Protein (MAT alpha-2 tr 99.6 3.1E-16 1.1E-20 122.9 4.6 59 56-114 26-87 (87)
60 3nau_A Zinc fingers and homeob 99.6 5.3E-16 1.8E-20 117.2 4.2 53 64-116 11-63 (66)
61 1au7_A Protein PIT-1, GHF-1; c 99.6 4.6E-16 1.6E-20 133.3 3.8 60 56-115 86-145 (146)
62 1e3o_C Octamer-binding transcr 99.6 5E-16 1.7E-20 134.8 3.8 60 56-115 100-159 (160)
63 2xsd_C POU domain, class 3, tr 99.6 4.4E-16 1.5E-20 136.0 3.1 62 56-117 98-159 (164)
64 2e19_A Transcription factor 8; 99.6 8.6E-16 2.9E-20 114.8 4.2 53 63-115 9-61 (64)
65 1x2m_A LAG1 longevity assuranc 99.6 3.8E-16 1.3E-20 117.4 2.1 50 66-115 9-59 (64)
66 3d1n_I POU domain, class 6, tr 99.6 1.3E-15 4.6E-20 130.7 5.2 59 56-114 92-150 (151)
67 2da6_A Hepatocyte nuclear fact 99.6 3.3E-15 1.1E-19 121.7 6.2 63 55-117 4-87 (102)
68 3l1p_A POU domain, class 5, tr 99.5 2.3E-15 7.9E-20 130.1 4.0 61 55-115 94-154 (155)
69 1wi3_A DNA-binding protein SAT 99.5 3.4E-15 1.2E-19 113.6 4.4 58 56-113 6-64 (71)
70 2d5v_A Hepatocyte nuclear fact 99.5 4.1E-15 1.4E-19 128.9 3.8 62 56-117 96-157 (164)
71 1lfb_A Liver transcription fac 99.5 2.9E-15 9.9E-20 121.2 2.6 62 56-117 8-90 (99)
72 3k2a_A Homeobox protein MEIS2; 99.5 4.9E-15 1.7E-19 111.4 3.3 58 63-120 4-64 (67)
73 1ic8_A Hepatocyte nuclear fact 99.3 2.5E-13 8.6E-18 121.9 1.3 59 56-114 114-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.3 1E-12 3.5E-17 104.7 4.4 57 63-119 11-70 (89)
75 2da7_A Zinc finger homeobox pr 99.3 1.2E-12 4.1E-17 99.9 3.5 46 66-111 14-59 (71)
76 1mh3_A Maltose binding-A1 home 99.2 4.1E-12 1.4E-16 120.6 2.7 53 61-113 369-421 (421)
77 2h8r_A Hepatocyte nuclear fact 99.1 1.2E-11 4.2E-16 112.9 3.5 55 58-112 143-218 (221)
78 2nzz_A Penetratin conjugated G 98.8 5E-10 1.7E-14 75.6 -1.2 27 99-125 1-27 (37)
79 2ys9_A Homeobox and leucine zi 91.5 0.066 2.3E-06 40.6 1.5 40 67-106 16-55 (70)
80 2jn6_A Protein CGL2762, transp 81.1 1.5 5.3E-05 33.2 4.0 42 62-107 4-46 (97)
81 2glo_A Brinker CG9653-PA; prot 69.3 2.3 8E-05 29.5 2.0 45 61-106 3-47 (59)
82 1hlv_A CENP-B, major centromer 66.2 5.8 0.0002 31.2 4.1 48 60-110 4-51 (131)
83 1gu4_A CAAT/enhancer binding p 62.9 12 0.00043 28.4 5.1 47 108-163 28-74 (78)
84 1hjb_A Ccaat/enhancer binding 60.0 13 0.00046 28.8 4.9 48 108-164 28-75 (87)
85 1tc3_C Protein (TC3 transposas 57.9 6.1 0.00021 24.8 2.3 40 63-107 5-44 (51)
86 2elh_A CG11849-PA, LD40883P; s 56.9 9.3 0.00032 28.5 3.5 42 60-106 19-60 (87)
87 3hug_A RNA polymerase sigma fa 56.1 8.5 0.00029 28.7 3.2 46 64-114 38-83 (92)
88 1jko_C HIN recombinase, DNA-in 54.6 2.9 9.9E-05 27.0 0.2 41 63-108 5-45 (52)
89 1t2k_D Cyclic-AMP-dependent tr 51.7 25 0.00086 24.9 4.9 33 124-162 27-59 (61)
90 1jnm_A Proto-oncogene C-JUN; B 48.6 24 0.00082 25.2 4.4 33 124-162 27-59 (62)
91 2yy0_A C-MYC-binding protein; 48.4 16 0.00056 25.7 3.4 33 126-164 19-51 (53)
92 2o8x_A Probable RNA polymerase 46.8 10 0.00035 26.2 2.1 45 64-113 16-60 (70)
93 2wt7_A Proto-oncogene protein 45.4 36 0.0012 24.4 4.9 27 124-150 28-54 (63)
94 1gd2_E Transcription factor PA 44.3 32 0.0011 25.6 4.6 22 129-150 39-60 (70)
95 1ci6_A Transcription factor AT 42.7 42 0.0014 24.2 4.9 28 123-150 27-54 (63)
96 2lv7_A Calcium-binding protein 41.6 57 0.002 24.6 5.9 45 61-105 27-78 (100)
97 3mzy_A RNA polymerase sigma-H 39.7 19 0.00066 28.2 3.0 45 63-113 109-153 (164)
98 1s7o_A Hypothetical UPF0122 pr 35.2 1.1E+02 0.0038 23.9 6.8 47 63-114 22-68 (113)
99 2p7v_B Sigma-70, RNA polymeras 34.3 20 0.00067 25.1 2.0 49 64-113 6-54 (68)
100 1t2k_D Cyclic-AMP-dependent tr 34.2 76 0.0026 22.3 5.1 39 111-149 21-59 (61)
101 1p4w_A RCSB; solution structur 33.8 31 0.001 26.7 3.2 44 62-111 33-76 (99)
102 1tty_A Sigma-A, RNA polymerase 33.1 22 0.00077 26.2 2.3 50 64-114 19-68 (87)
103 1ku3_A Sigma factor SIGA; heli 33.0 25 0.00085 24.9 2.4 49 64-113 11-59 (73)
104 3c57_A Two component transcrip 33.0 22 0.00077 26.8 2.3 46 63-114 27-72 (95)
105 1je8_A Nitrate/nitrite respons 32.6 19 0.00065 26.4 1.8 46 63-114 21-66 (82)
106 1iuf_A Centromere ABP1 protein 31.5 31 0.0011 28.1 3.0 48 58-108 6-60 (144)
107 1fse_A GERE; helix-turn-helix 31.1 25 0.00085 24.4 2.1 45 63-113 11-55 (74)
108 3i5g_B Myosin regulatory light 30.3 77 0.0026 25.3 5.3 40 60-99 6-50 (153)
109 2rn7_A IS629 ORFA; helix, all 29.6 36 0.0012 25.7 3.0 46 61-106 4-52 (108)
110 2wt7_A Proto-oncogene protein 29.4 99 0.0034 22.0 5.1 32 117-148 28-59 (63)
111 2dgc_A Protein (GCN4); basic d 29.1 71 0.0024 23.0 4.3 28 130-163 34-61 (63)
112 1xsv_A Hypothetical UPF0122 pr 28.8 59 0.002 25.4 4.2 46 64-114 26-71 (113)
113 3lph_A Protein REV; helix-loop 28.6 43 0.0015 25.2 3.1 36 69-118 18-53 (72)
114 2x7l_M HIV REV; nuclear export 28.6 34 0.0012 27.9 2.7 34 70-117 16-49 (115)
115 1x3u_A Transcriptional regulat 28.5 18 0.00062 25.6 1.0 45 64-114 17-61 (79)
116 2yy0_A C-MYC-binding protein; 27.4 70 0.0024 22.4 3.9 32 119-150 19-50 (53)
117 1gd2_E Transcription factor PA 27.4 69 0.0024 23.8 4.0 36 115-150 32-67 (70)
118 1or7_A Sigma-24, RNA polymeras 27.2 34 0.0012 27.9 2.6 45 64-113 141-185 (194)
119 1jnm_A Proto-oncogene C-JUN; B 27.1 47 0.0016 23.6 3.0 30 118-147 28-57 (62)
120 1rp3_A RNA polymerase sigma fa 25.8 35 0.0012 28.6 2.5 45 64-113 188-232 (239)
121 1u78_A TC3 transposase, transp 25.5 44 0.0015 25.8 2.9 42 62-108 5-46 (141)
122 2wt7_B Transcription factor MA 25.1 80 0.0028 24.6 4.2 29 122-150 51-79 (90)
123 2rnj_A Response regulator prot 22.5 47 0.0016 24.5 2.3 46 63-114 29-74 (91)
124 1ci6_A Transcription factor AT 21.2 1.6E+02 0.0054 21.0 4.9 35 115-149 26-60 (63)
125 2k27_A Paired box protein PAX- 20.8 68 0.0023 25.8 3.2 41 62-107 24-64 (159)
No 1
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.73 E-value=1.4e-18 Score=128.09 Aligned_cols=61 Identities=30% Similarity=0.413 Sum_probs=53.2
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 56 ~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
..+++|+.||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 3456677799999999999999999999999999999999999999999999999999863
No 2
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.73 E-value=2e-18 Score=127.71 Aligned_cols=61 Identities=33% Similarity=0.617 Sum_probs=55.3
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 56 ~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
..+++|++||..|+..||..|..++||+..++..||..+||+++||++||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 3556777899999999999999999999999999999999999999999999999999863
No 3
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=132.54 Aligned_cols=62 Identities=26% Similarity=0.439 Sum_probs=56.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
...+++|++||.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+++
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 34455666799999999999999999999999999999999999999999999999999865
No 4
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=4.2e-18 Score=131.67 Aligned_cols=66 Identities=30% Similarity=0.597 Sum_probs=59.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHHHH
Q 021194 54 GGHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (316)
Q Consensus 54 ~g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~~~ 119 (316)
++..+++|++|+.+|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 345566777899999999999999999999999999999999999999999999999999976543
No 5
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3e-18 Score=132.52 Aligned_cols=62 Identities=34% Similarity=0.584 Sum_probs=56.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
...+++|++|+.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 34455566699999999999999999999999999999999999999999999999999864
No 6
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=2.2e-18 Score=130.02 Aligned_cols=62 Identities=26% Similarity=0.502 Sum_probs=57.5
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
+..+++|++||..|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 44566677799999999999999999999999999999999999999999999999999864
No 7
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.5e-18 Score=128.73 Aligned_cols=62 Identities=27% Similarity=0.538 Sum_probs=57.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
+..+++|++||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 45566777899999999999999999999999999999999999999999999999999864
No 8
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.5e-18 Score=131.71 Aligned_cols=64 Identities=25% Similarity=0.498 Sum_probs=59.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHHH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~~ 118 (316)
+..+++|++|+.+|+.+||..|..++||+..++..||.+|||+++||+|||||||+|+|++...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 4556677789999999999999999999999999999999999999999999999999997654
No 9
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=4.5e-18 Score=128.31 Aligned_cols=62 Identities=42% Similarity=0.676 Sum_probs=57.5
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
+..+++|++||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 44556677899999999999999999999999999999999999999999999999999864
No 10
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.71 E-value=5.4e-18 Score=130.22 Aligned_cols=63 Identities=30% Similarity=0.473 Sum_probs=57.4
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHHHH
Q 021194 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (316)
Q Consensus 57 ~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~~~ 119 (316)
.+++|++||..|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|+.+.++
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 344556699999999999999999999999999999999999999999999999999876543
No 11
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=5.4e-18 Score=131.76 Aligned_cols=62 Identities=27% Similarity=0.381 Sum_probs=57.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
+..+++|+.|+..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.+
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34555666799999999999999999999999999999999999999999999999999865
No 12
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.71 E-value=1.1e-17 Score=128.55 Aligned_cols=63 Identities=33% Similarity=0.485 Sum_probs=58.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~ 117 (316)
+..+++|++||..|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+...
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 445566777999999999999999999999999999999999999999999999999998764
No 13
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=3.8e-18 Score=128.41 Aligned_cols=62 Identities=23% Similarity=0.388 Sum_probs=57.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
+..+++|++|+.+|+.+||..|..++||+..++..||..+||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 45566777899999999999999999999999999999999999999999999999999864
No 14
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=6.4e-18 Score=130.54 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=58.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~ 117 (316)
+..+++|++|+.+|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 455666777999999999999999999999999999999999999999999999999998764
No 15
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4e-18 Score=128.56 Aligned_cols=63 Identities=32% Similarity=0.508 Sum_probs=57.9
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 54 GGHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 54 ~g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
++..+++|++||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 345566677899999999999999999999999999999999999999999999999999864
No 16
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.70 E-value=6.1e-18 Score=124.22 Aligned_cols=58 Identities=31% Similarity=0.613 Sum_probs=52.6
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhh
Q 021194 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (316)
Q Consensus 57 ~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kk 114 (316)
.+++|++||..|+..||..|..++||+..++..||..+||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 3556777999999999999999999999999999999999999999999999999987
No 17
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.70 E-value=9.4e-18 Score=133.67 Aligned_cols=65 Identities=31% Similarity=0.553 Sum_probs=58.6
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHHHHH
Q 021194 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERD 120 (316)
Q Consensus 56 ~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~~~~ 120 (316)
..+++|++||.+|+..||..|..++||+..++..||..+||+++||+|||||||+|||++..+..
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 44555667999999999999999999999999999999999999999999999999999876544
No 18
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=4.8e-18 Score=127.81 Aligned_cols=62 Identities=21% Similarity=0.424 Sum_probs=57.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
+..+++|++||.+|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 44566677799999999999999999999999999999999999999999999999999864
No 19
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=8.2e-18 Score=122.06 Aligned_cols=57 Identities=32% Similarity=0.553 Sum_probs=54.1
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhh
Q 021194 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (316)
Q Consensus 58 krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kk 114 (316)
+++|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 356777999999999999999999999999999999999999999999999999986
No 20
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.70 E-value=8e-18 Score=130.95 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=55.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhh----cCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhh
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEV----ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~----~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kk 114 (316)
+..+++|+.||.+|+..||..|+. ++||+..+|++||..|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 345566667999999999999999 999999999999999999999999999999999986
No 21
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=6.8e-18 Score=130.92 Aligned_cols=59 Identities=27% Similarity=0.320 Sum_probs=55.5
Q ss_pred CCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHH
Q 021194 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (316)
Q Consensus 59 rkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~ 117 (316)
.++++||.+|+.+||..|..++||+..+|++||..+||+++||+|||||||+|+|+.++
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 45667999999999999999999999999999999999999999999999999998764
No 22
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.69 E-value=1.5e-17 Score=124.93 Aligned_cols=61 Identities=30% Similarity=0.481 Sum_probs=56.8
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHH
Q 021194 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (316)
Q Consensus 57 ~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~ 117 (316)
.+++|++||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 3556777999999999999999999999999999999999999999999999999998764
No 23
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.69 E-value=7.1e-18 Score=125.70 Aligned_cols=60 Identities=27% Similarity=0.494 Sum_probs=56.1
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 57 ~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
.+++|++||.+|+..||..|..++||+..++..||..+||+++||++||||||+|+|++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 355677799999999999999999999999999999999999999999999999999865
No 24
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.69 E-value=4.5e-18 Score=127.60 Aligned_cols=62 Identities=24% Similarity=0.509 Sum_probs=57.7
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHH
Q 021194 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (316)
Q Consensus 56 ~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~ 117 (316)
..+++|++||..|+..||..|..++||+..++..||..+||+++||++||||||+|+|+.+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 45667778999999999999999999999999999999999999999999999999998753
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.69 E-value=9.8e-18 Score=126.02 Aligned_cols=60 Identities=33% Similarity=0.656 Sum_probs=56.2
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHH
Q 021194 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (316)
Q Consensus 58 krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~ 117 (316)
+++|++||..|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|+...
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 456777999999999999999999999999999999999999999999999999998753
No 26
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.69 E-value=2.2e-17 Score=125.70 Aligned_cols=61 Identities=26% Similarity=0.479 Sum_probs=56.7
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 56 ~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
..+++|++||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 3456677799999999999999999999999999999999999999999999999999864
No 27
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-17 Score=127.27 Aligned_cols=59 Identities=24% Similarity=0.410 Sum_probs=55.6
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 58 krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
++++++||.+|+.+||..|..++||+..++..||..+||+++||++||||||+|+|++.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 35667799999999999999999999999999999999999999999999999999875
No 28
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.68 E-value=1.5e-17 Score=121.77 Aligned_cols=58 Identities=36% Similarity=0.562 Sum_probs=54.5
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhH
Q 021194 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (316)
Q Consensus 58 krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkk 115 (316)
+++|++||.+|+..||..|..++||+..++..||..+||++.||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4567789999999999999999999999999999999999999999999999999974
No 29
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.68 E-value=1.1e-17 Score=129.78 Aligned_cols=62 Identities=32% Similarity=0.569 Sum_probs=54.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
+..+++|++||..|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|+..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 44566677799999999999999999999999999999999999999999999999999864
No 30
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.68 E-value=2.2e-17 Score=127.74 Aligned_cols=61 Identities=31% Similarity=0.513 Sum_probs=56.5
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 56 ~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
..+++|++|+..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|++.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 3455566799999999999999999999999999999999999999999999999999875
No 31
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-17 Score=125.74 Aligned_cols=63 Identities=30% Similarity=0.548 Sum_probs=57.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~ 117 (316)
+..++.|++|+..|+..||..|..++||+..++..||..+||++.||++||||||+|+|++..
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 445566677999999999999999999999999999999999999999999999999998653
No 32
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=2e-17 Score=125.41 Aligned_cols=58 Identities=33% Similarity=0.587 Sum_probs=54.9
Q ss_pred CCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 59 EKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 59 rkRrRfT~~Ql~~LE~~F~~-~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
++|++|+.+|+.+||..|.. ++||+..++..||.++||+++||++||||||+|+|++.
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 46777999999999999996 99999999999999999999999999999999999865
No 33
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.68 E-value=1.4e-17 Score=121.84 Aligned_cols=57 Identities=32% Similarity=0.602 Sum_probs=50.5
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 60 kRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
.|++||.+|+..||..|..++||+..++..||..+||+++||++||||||+|+|+.+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 467799999999999999999999999999999999999999999999999999864
No 34
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.68 E-value=2.2e-17 Score=119.15 Aligned_cols=56 Identities=36% Similarity=0.514 Sum_probs=53.0
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhh
Q 021194 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (316)
Q Consensus 58 krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~K 113 (316)
+++|++|+..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 45677799999999999999999999999999999999999999999999999986
No 35
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.68 E-value=1e-17 Score=125.22 Aligned_cols=61 Identities=31% Similarity=0.495 Sum_probs=56.9
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHHH
Q 021194 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (316)
Q Consensus 58 krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~~ 118 (316)
+++|++||.+|+.+||..|..++||+..++..||..+||+++||++||||||+|+|++..+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 4567779999999999999999999999999999999999999999999999999987644
No 36
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.68 E-value=2.2e-17 Score=123.96 Aligned_cols=60 Identities=32% Similarity=0.517 Sum_probs=56.1
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHH
Q 021194 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (316)
Q Consensus 58 krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~ 117 (316)
+++|++||..|+..||..|..++||+..++..||..+||++++|++||||||+|+|+...
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 456677999999999999999999999999999999999999999999999999998753
No 37
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-17 Score=129.23 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=56.2
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhc----CCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 56 HVSEKKRRLSVDQVKALEKNFEVE----NKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 56 ~~krkRrRfT~~Ql~~LE~~F~~~----~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
..+++|+.||.+|+.+||.+|..+ +||+..++.+||.++||+++||+|||||||+|+|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 445556679999999999999999 9999999999999999999999999999999999854
No 38
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.68 E-value=1.8e-17 Score=130.30 Aligned_cols=62 Identities=34% Similarity=0.691 Sum_probs=54.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
+..+++|++||..|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+.+
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 45566777899999999999999999999999999999999999999999999999999863
No 39
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=3e-17 Score=124.84 Aligned_cols=59 Identities=31% Similarity=0.541 Sum_probs=55.3
Q ss_pred CCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 58 SEKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 58 krkRrRfT~~Ql~~LE~~F~~-~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
.++|++||.+|+.+||..|.. ++||+..++..||..+||+++||++||||||+|+|+.+
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 356777999999999999995 99999999999999999999999999999999999875
No 40
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.67 E-value=2.2e-17 Score=119.56 Aligned_cols=54 Identities=35% Similarity=0.639 Sum_probs=51.0
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhH
Q 021194 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (316)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkk 115 (316)
+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 458999999999999999999999999999999999999999999999999985
No 41
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.67 E-value=3.5e-17 Score=130.83 Aligned_cols=63 Identities=29% Similarity=0.457 Sum_probs=56.7
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHHH
Q 021194 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (316)
Q Consensus 56 ~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~~ 118 (316)
..+++|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+.++.
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 344567779999999999999999999999999999999999999999999999999998754
No 42
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.66 E-value=2.5e-17 Score=128.43 Aligned_cols=59 Identities=14% Similarity=0.321 Sum_probs=53.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhh
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~-----~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kk 114 (316)
...+++|+.||.+|+..|| .|.. ++||+..+|++||.+|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 3445556669999999999 7999 999999999999999999999999999999999986
No 43
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.66 E-value=2.7e-17 Score=120.45 Aligned_cols=57 Identities=33% Similarity=0.518 Sum_probs=48.6
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhh
Q 021194 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (316)
Q Consensus 57 ~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~K 113 (316)
.+++|++|+..|+.+||..|..++||+..++..||..+||++.||++||||||+++|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 445566799999999999999999999999999999999999999999999999986
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=3.4e-17 Score=131.00 Aligned_cols=63 Identities=35% Similarity=0.590 Sum_probs=55.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~ 117 (316)
+..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|++..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 455666777999999999999999999999999999999999999999999999999998753
No 45
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.66 E-value=5.1e-17 Score=123.41 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=56.5
Q ss_pred CCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHH
Q 021194 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (316)
Q Consensus 57 ~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~ 117 (316)
.++.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+.+.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 3456777999999999999999999999999999999999999999999999999998653
No 46
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.7e-17 Score=125.19 Aligned_cols=60 Identities=27% Similarity=0.340 Sum_probs=55.7
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHH
Q 021194 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (316)
Q Consensus 58 krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~ 117 (316)
...|++||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+...
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 344677999999999999999999999999999999999999999999999999998653
No 47
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=7.2e-17 Score=122.43 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=57.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~---~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~ 117 (316)
+..+++|++|+..|+.+||.+|.. ++||+..++.+||..+||+++||++||||||+|+|+..+
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 345566777999999999999987 999999999999999999999999999999999998754
No 48
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=4.3e-17 Score=129.76 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=54.2
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHH
Q 021194 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (316)
Q Consensus 60 kRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~ 117 (316)
+.++||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|||++..
T Consensus 14 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred hhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 3447999999999999999999999999999999999999999999999999998653
No 49
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.64 E-value=7.9e-17 Score=117.73 Aligned_cols=56 Identities=27% Similarity=0.397 Sum_probs=53.2
Q ss_pred CCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhH
Q 021194 60 KKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (316)
Q Consensus 60 kRrRfT~~Ql~~LE~~F~~---~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkk 115 (316)
++++|+.+|+.+||..|.. ++||+..++..||.++||+++||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4667999999999999999 9999999999999999999999999999999999874
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.64 E-value=7.6e-17 Score=122.32 Aligned_cols=61 Identities=28% Similarity=0.441 Sum_probs=56.8
Q ss_pred CCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHHH
Q 021194 58 SEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (316)
Q Consensus 58 krkRrRfT~~Ql~~LE~~F---~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~~ 118 (316)
+++|++|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5667789999999999999 899999999999999999999999999999999999987644
No 51
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=3.3e-17 Score=125.07 Aligned_cols=58 Identities=26% Similarity=0.406 Sum_probs=54.1
Q ss_pred CCCCcCCHHHHHHHHHhh-hhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 59 EKKRRLSVDQVKALEKNF-EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 59 rkRrRfT~~Ql~~LE~~F-~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
+++++++.+|+.+||..| ..++||+..++.+||.++||+++||+|||||||+|||+..
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 456679999999999999 9999999999999999999999999999999999999753
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=6.9e-17 Score=119.49 Aligned_cols=58 Identities=28% Similarity=0.425 Sum_probs=54.4
Q ss_pred CCCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhh
Q 021194 57 VSEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (316)
Q Consensus 57 ~krkRrRfT~~Ql~~LE~~F---~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kk 114 (316)
.+++|++|+.+|+.+||.+| ..++||+..++.+||..+||++.||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 35567779999999999999 89999999999999999999999999999999999986
No 53
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.63 E-value=1.6e-16 Score=124.20 Aligned_cols=61 Identities=28% Similarity=0.441 Sum_probs=56.2
Q ss_pred CCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHHH
Q 021194 58 SEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (316)
Q Consensus 58 krkRrRfT~~Ql~~LE~~F---~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~~ 118 (316)
+++|++|+..|+.+||.+| ..++||+..++..||..+||+++||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 4667789999999999999 899999999999999999999999999999999999987643
No 54
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.7e-16 Score=126.47 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=57.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------CCccceeeechhhHhhhhhHHH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------LQPRQVAVWFQNRRARWKTKQL 117 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~Lg---------------Ls~rQVqVWFQNRRaK~Kkkq~ 117 (316)
.+.++.|++|+..|+.+||..|+.++||+..+|++||..|| |++.+|++||||||+|+|+++.
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 34556666799999999999999999999999999999999 9999999999999999998764
No 55
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.1e-16 Score=125.03 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=54.1
Q ss_pred CCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 59 rkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
.++++||.+|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+..
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 3455699999999999999999999999999999999999999999999999998865
No 56
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.62 E-value=1.4e-16 Score=124.25 Aligned_cols=63 Identities=24% Similarity=0.358 Sum_probs=56.2
Q ss_pred CCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHHHHH
Q 021194 58 SEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERD 120 (316)
Q Consensus 58 krkRrRfT~~Ql~~LE~~F~~---~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~~~~ 120 (316)
++++++|+.+|+.+||.+|.. ++||+..++..||..+||+++||++||||||+|+|+.....+
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~~ 68 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAPE 68 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCHH
Confidence 345666999999999999999 999999999999999999999999999999999998765433
No 57
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.62 E-value=2.6e-16 Score=122.89 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=57.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHHH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~---~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~~ 118 (316)
...+++|++|+.+|+.+|+.+|.. ++||+..+|.+||..+||+++||++||||||+|+|+..++
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 445566677999999999999987 5999999999999999999999999999999999987544
No 58
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.62 E-value=5.6e-17 Score=123.32 Aligned_cols=55 Identities=42% Similarity=0.622 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHHH
Q 021194 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (316)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~~ 118 (316)
+|..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+|+++..
T Consensus 11 ~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 11 MSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 7999999999999999999999999999999999999999999999999987654
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.61 E-value=3.1e-16 Score=122.92 Aligned_cols=59 Identities=25% Similarity=0.365 Sum_probs=54.5
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhh
Q 021194 56 HVSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (316)
Q Consensus 56 ~~krkRrRfT~~Ql~~LE~~F~~---~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kk 114 (316)
..+++|++|+.+|+.+||.+|.. ++||+..++..||..+||+++||++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 34555677999999999999999 999999999999999999999999999999999983
No 60
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.59 E-value=5.3e-16 Score=117.25 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHH
Q 021194 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (316)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq 116 (316)
-|.+|+..||..|..++||+..++.+||..+||+++||++||||||+|||+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999754
No 61
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.58 E-value=4.6e-16 Score=133.35 Aligned_cols=60 Identities=32% Similarity=0.530 Sum_probs=54.1
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhH
Q 021194 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (316)
Q Consensus 56 ~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkk 115 (316)
..+++|++|+..|+..||..|..++||+..+|..||..+||+++||+|||||||+|+|++
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 344556669999999999999999999999999999999999999999999999999985
No 62
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.58 E-value=5e-16 Score=134.79 Aligned_cols=60 Identities=28% Similarity=0.441 Sum_probs=53.7
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhH
Q 021194 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (316)
Q Consensus 56 ~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkk 115 (316)
..+++|++|+..|+..||..|..++||+..+|..||..+||+++||+|||||||+|+|++
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 445566679999999999999999999999999999999999999999999999999985
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.58 E-value=4.4e-16 Score=135.99 Aligned_cols=62 Identities=31% Similarity=0.360 Sum_probs=52.5
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHH
Q 021194 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (316)
Q Consensus 56 ~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~ 117 (316)
+.+++|++|+..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+|+...
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 44555666999999999999999999999999999999999999999999999999999764
No 64
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=8.6e-16 Score=114.81 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhH
Q 021194 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (316)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkk 115 (316)
.++.+|+..||..|..++||+..+|.+||.++||+++||+|||||||+|.++.
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 46799999999999999999999999999999999999999999999988763
No 65
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=3.8e-16 Score=117.36 Aligned_cols=50 Identities=26% Similarity=0.453 Sum_probs=46.9
Q ss_pred HHHHHHHHHhh-hhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhH
Q 021194 66 VDQVKALEKNF-EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (316)
Q Consensus 66 ~~Ql~~LE~~F-~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkk 115 (316)
+.|+.+||+.| ..++||+..+|.+||.+|||+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 56899999999 568999999999999999999999999999999999974
No 66
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.57 E-value=1.3e-15 Score=130.70 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=54.8
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhh
Q 021194 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (316)
Q Consensus 56 ~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kk 114 (316)
+.+++|++|+..|+..||..|..++||+..++..||.++||+++||+|||||||+|+|+
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34455666999999999999999999999999999999999999999999999999986
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.3e-15 Score=121.75 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=56.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHh---------------------CCCccceeeechhhHhhhh
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQEL---------------------GLQPRQVAVWFQNRRARWK 113 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~L---------------------gLs~rQVqVWFQNRRaK~K 113 (316)
+..++.|++|+..|+.+||..|+.++||+..+|++||..| +|++.+|++||||||+++|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 3455566679999999999999999999999999999999 7999999999999999999
Q ss_pred hHHH
Q 021194 114 TKQL 117 (316)
Q Consensus 114 kkq~ 117 (316)
+++.
T Consensus 84 r~~~ 87 (102)
T 2da6_A 84 FRQK 87 (102)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 8753
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.54 E-value=2.3e-15 Score=130.05 Aligned_cols=61 Identities=28% Similarity=0.376 Sum_probs=55.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhH
Q 021194 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (316)
Q Consensus 55 g~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkk 115 (316)
+..+++|++|+..|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3455667779999999999999999999999999999999999999999999999999974
No 69
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=3.4e-15 Score=113.62 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=52.3
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCCccceeeechhhHhhhh
Q 021194 56 HVSEKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (316)
Q Consensus 56 ~~krkRrRfT~~Ql~~LE~~F~~-~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~K 113 (316)
..++.|+.|+.+|+..|+.+|+. ++||+.+.|..||.++||++++|+|||||||--.+
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 44555666999999999999999 99999999999999999999999999999996543
No 70
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.52 E-value=4.1e-15 Score=128.87 Aligned_cols=62 Identities=24% Similarity=0.320 Sum_probs=54.0
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHH
Q 021194 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (316)
Q Consensus 56 ~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~ 117 (316)
..+++|++|+..|+..||..|..++||+..+|..||..+||+++||+|||||||+|+|+...
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 44566667999999999999999999999999999999999999999999999999998653
No 71
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.51 E-value=2.9e-15 Score=121.21 Aligned_cols=62 Identities=21% Similarity=0.324 Sum_probs=53.2
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHH------------------hC---CCccceeeechhhHhhhhh
Q 021194 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQE------------------LG---LQPRQVAVWFQNRRARWKT 114 (316)
Q Consensus 56 ~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~------------------Lg---Ls~rQVqVWFQNRRaK~Kk 114 (316)
+.++.|+.|+..|+.+||..|+.++||+..+|++||.. || |++.+|++||||||+++|+
T Consensus 8 k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~ 87 (99)
T 1lfb_A 8 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 87 (99)
T ss_dssp -----CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHH
Confidence 34445556999999999999999999999999999999 88 9999999999999999988
Q ss_pred HHH
Q 021194 115 KQL 117 (316)
Q Consensus 115 kq~ 117 (316)
++.
T Consensus 88 k~~ 90 (99)
T 1lfb_A 88 RHK 90 (99)
T ss_dssp CC-
T ss_pred hch
Confidence 763
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=4.9e-15 Score=111.38 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHhhh---hcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHHHHH
Q 021194 63 RLSVDQVKALEKNFE---VENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERD 120 (316)
Q Consensus 63 RfT~~Ql~~LE~~F~---~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~~~~ 120 (316)
+|+.+|+.+|+.+|. .++||+..++.+||..+||+++||++||||||+|+|+..+++.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 599999999999999 9999999999999999999999999999999999998776543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.31 E-value=2.5e-13 Score=121.87 Aligned_cols=59 Identities=19% Similarity=0.264 Sum_probs=51.9
Q ss_pred CCCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------------CCccceeeechhhHhhhhh
Q 021194 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------------LQPRQVAVWFQNRRARWKT 114 (316)
Q Consensus 56 ~~krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~Lg---------------------Ls~rQVqVWFQNRRaK~Kk 114 (316)
+.++.|+.|+..|+.+||+.|..++||+...|++||..+| |++.+|++||||||+++|.
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 3444555699999999999999999999999999999999 9999999999999999875
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.31 E-value=1e-12 Score=104.68 Aligned_cols=57 Identities=26% Similarity=0.320 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHHHH
Q 021194 63 RLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (316)
Q Consensus 63 RfT~~Ql~~LE~~F~~---~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~~~ 119 (316)
-|+.+++.+|+.+|.. ++||+..+|.+||.++||+++||++||||+|.|+++...++
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 3899999999999987 99999999999999999999999999999999999876544
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.2e-12 Score=99.93 Aligned_cols=46 Identities=20% Similarity=0.459 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhh
Q 021194 66 VDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (316)
Q Consensus 66 ~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK 111 (316)
.+|+..|+.+|..+++|+.+++..||..+||+.++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999984
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.19 E-value=4.1e-12 Score=120.58 Aligned_cols=53 Identities=34% Similarity=0.534 Sum_probs=50.5
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhh
Q 021194 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (316)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~K 113 (316)
++.++..|+..||+.|+.++||+..+|++||.++||+++||+|||||||+|+|
T Consensus 369 ~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 44599999999999999999999999999999999999999999999999986
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.15 E-value=1.2e-11 Score=112.86 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=49.5
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------------CCccceeeechhhHhhh
Q 021194 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------------LQPRQVAVWFQNRRARW 112 (316)
Q Consensus 58 krkRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~Lg---------------------Ls~rQVqVWFQNRRaK~ 112 (316)
++.|+.|+..|+.+||..|..++||+..+|++||..+| |++.||++||||||++.
T Consensus 143 RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 143 RRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 33344499999999999999999999999999999998 89999999999999864
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.76 E-value=5e-10 Score=75.56 Aligned_cols=27 Identities=37% Similarity=0.975 Sum_probs=22.2
Q ss_pred cceeeechhhHhhhhhHHHHHHHHHHH
Q 021194 99 RQVAVWFQNRRARWKTKQLERDYGVLK 125 (316)
Q Consensus 99 rQVqVWFQNRRaK~Kkkq~~~~~~~lk 125 (316)
+||+|||||||+|||+++.++.+..++
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~~ 27 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDIIQ 27 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSSS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHHH
Confidence 699999999999999998876554433
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.47 E-value=0.066 Score=40.59 Aligned_cols=40 Identities=25% Similarity=0.468 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeech
Q 021194 67 DQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (316)
Q Consensus 67 ~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQ 106 (316)
.-.+.|+.+|...+.+.......|+.+.+|+..||+-||-
T Consensus 16 ~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 16 PDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred CcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 3457899999999999999999999999999999999995
No 80
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=81.06 E-value=1.5 Score=33.17 Aligned_cols=42 Identities=14% Similarity=0.276 Sum_probs=30.2
Q ss_pred CcCCHHHHHHHHHhhhhc-CCCCHHHHHHHHHHhCCCccceeeechh
Q 021194 62 RRLSVDQVKALEKNFEVE-NKLEPERKVKLAQELGLQPRQVAVWFQN 107 (316)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~-~yPs~~~r~~LA~~LgLs~rQVqVWFQN 107 (316)
++|+.++....-..+... .. ...++|+.+|++...|..|.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 458888876655555322 22 3568999999999999999853
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=69.34 E-value=2.3 Score=29.54 Aligned_cols=45 Identities=13% Similarity=0.255 Sum_probs=31.2
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeech
Q 021194 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (316)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQ 106 (316)
+++|+.++.......+... ........++|+++|+++..|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4569998877665555433 22111256899999999999999974
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=66.23 E-value=5.8 Score=31.21 Aligned_cols=48 Identities=23% Similarity=0.452 Sum_probs=36.8
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHh
Q 021194 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRA 110 (316)
Q Consensus 60 kRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRa 110 (316)
+|+++|.++...+-..+..+.... ..++|+.+|++...|..|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 466799999888777775554443 336899999999999999877654
No 83
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=62.85 E-value=12 Score=28.43 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=30.4
Q ss_pred hHhhhhhHHHHHHHHHHHhhhHHHhhhhhchHHHHHHHHHhhcccccchhhhhhcc
Q 021194 108 RRARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATLD 163 (316)
Q Consensus 108 RRaK~Kkkq~~~~~~~lk~~~~~L~~~~~sl~~en~~L~~e~~~~~~d~~lk~~L~ 163 (316)
+|.+.|+++...+ +......|..+|..|..+...|..|+. .|+..|.
T Consensus 28 krSR~krk~r~~e---~~~r~~~L~~eN~~L~~~v~~L~~E~~------~Lr~ll~ 74 (78)
T 1gu4_A 28 RKSRDKAKMRNLE---TQHKVLELTAENERLQKKVEQLSRELS------TLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTTTC
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 3555555544333 344556777778888888888888887 7776554
No 84
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=60.01 E-value=13 Score=28.84 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=30.3
Q ss_pred hHhhhhhHHHHHHHHHHHhhhHHHhhhhhchHHHHHHHHHhhcccccchhhhhhccc
Q 021194 108 RRARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATLDR 164 (316)
Q Consensus 108 RRaK~Kkkq~~~~~~~lk~~~~~L~~~~~sl~~en~~L~~e~~~~~~d~~lk~~L~~ 164 (316)
||.+.|+++.+.+ +......|..+|..|+.+...|..|+. .|+..|..
T Consensus 28 rrSR~krk~r~~e---~~~r~~~Le~EN~~Lr~~v~~L~~E~~------~Lr~ll~~ 75 (87)
T 1hjb_A 28 RKSRDKAKMRNLE---TQHKVLELTAENERLQKKVEQLSRELS------TLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHC
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 3555555544333 334456677777777777777777777 77776653
No 85
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=57.95 E-value=6.1 Score=24.81 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechh
Q 021194 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (316)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQN 107 (316)
.++.++...+...+... . ...++|+.+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 47787776555555433 2 3567899999999999998853
No 86
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=56.87 E-value=9.3 Score=28.52 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=30.2
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeech
Q 021194 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (316)
Q Consensus 60 kRrRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQ 106 (316)
++++|+.++....-..+... . ...++|+++|++...|..|..
T Consensus 19 ~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 19 PLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 44569998866555556432 2 356789999999999999974
No 87
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=56.11 E-value=8.5 Score=28.72 Aligned_cols=46 Identities=13% Similarity=0.235 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhh
Q 021194 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (316)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kk 114 (316)
++..|..+|.-.|-... .-.+||..+|++...|+.+...-|.+.|+
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 78888888887664432 45688999999999999887655554443
No 88
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=54.63 E-value=2.9 Score=26.98 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=29.2
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhh
Q 021194 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNR 108 (316)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNR 108 (316)
.++.++...+...+... . ...+||+.+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHc
Confidence 36666666665555533 2 35678999999999999998643
No 89
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=51.66 E-value=25 Score=24.93 Aligned_cols=33 Identities=27% Similarity=0.206 Sum_probs=19.9
Q ss_pred HHhhhHHHhhhhhchHHHHHHHHHhhcccccchhhhhhc
Q 021194 124 LKANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATL 162 (316)
Q Consensus 124 lk~~~~~L~~~~~sl~~en~~L~~e~~~~~~d~~lk~~L 162 (316)
+....+.|..++..|..+...|..|+. .|+..|
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~------~Lk~~l 59 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVA------QLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHh
Confidence 444455666666666666666666666 555544
No 90
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=48.58 E-value=24 Score=25.17 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=19.1
Q ss_pred HHhhhHHHhhhhhchHHHHHHHHHhhcccccchhhhhhc
Q 021194 124 LKANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATL 162 (316)
Q Consensus 124 lk~~~~~L~~~~~sl~~en~~L~~e~~~~~~d~~lk~~L 162 (316)
|....+.|..++..|..+...|..++. .|+..|
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~------~Lk~~l 59 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVA------QLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------TTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Confidence 444556666666666666677777666 555544
No 91
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=48.35 E-value=16 Score=25.75 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=22.7
Q ss_pred hhhHHHhhhhhchHHHHHHHHHhhcccccchhhhhhccc
Q 021194 126 ANYDALKLNYDSLQHDNEALLKETIVHETDHQNKATLDR 164 (316)
Q Consensus 126 ~~~~~L~~~~~sl~~en~~L~~e~~~~~~d~~lk~~L~~ 164 (316)
..+++|+.++..|+.....|.+++. +++.+|..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~------el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENK------KLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhc
Confidence 4456677777777777777777777 77766653
No 92
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=46.79 E-value=10 Score=26.16 Aligned_cols=45 Identities=18% Similarity=0.041 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhh
Q 021194 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (316)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~K 113 (316)
+++.+..+|...|-... .-.++|..+|+++..|+.|...-+.+.+
T Consensus 16 L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 16 LTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 78888888888764332 3567899999999999988765444444
No 93
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=45.38 E-value=36 Score=24.40 Aligned_cols=27 Identities=37% Similarity=0.386 Sum_probs=15.0
Q ss_pred HHhhhHHHhhhhhchHHHHHHHHHhhc
Q 021194 124 LKANYDALKLNYDSLQHDNEALLKETI 150 (316)
Q Consensus 124 lk~~~~~L~~~~~sl~~en~~L~~e~~ 150 (316)
|....+.|..++..|..+...|..++.
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555
No 94
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=44.27 E-value=32 Score=25.62 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=11.6
Q ss_pred HHHhhhhhchHHHHHHHHHhhc
Q 021194 129 DALKLNYDSLQHDNEALLKETI 150 (316)
Q Consensus 129 ~~L~~~~~sl~~en~~L~~e~~ 150 (316)
..|...+..+..+|..|+.++.
T Consensus 39 ~~le~~~~~l~~en~~Lr~~i~ 60 (70)
T 1gd2_E 39 VTLKELHSSTTLENDQLRQKVR 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555
No 95
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=42.68 E-value=42 Score=24.16 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=16.8
Q ss_pred HHHhhhHHHhhhhhchHHHHHHHHHhhc
Q 021194 123 VLKANYDALKLNYDSLQHDNEALLKETI 150 (316)
Q Consensus 123 ~lk~~~~~L~~~~~sl~~en~~L~~e~~ 150 (316)
.+......|...+..|..+...|..|+.
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666666665
No 96
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=41.56 E-value=57 Score=24.61 Aligned_cols=45 Identities=13% Similarity=0.264 Sum_probs=34.2
Q ss_pred CCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCC--Cccceeeec
Q 021194 61 KRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGL--QPRQVAVWF 105 (316)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~-----~~yPs~~~r~~LA~~LgL--s~rQVqVWF 105 (316)
...++.+|+..|+..|.. +.+.+..+...+.+.+|. ++.+|+.+|
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 345999999999999874 457889988888888885 455555555
No 97
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=39.71 E-value=19 Score=28.21 Aligned_cols=45 Identities=13% Similarity=0.021 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhh
Q 021194 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (316)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~K 113 (316)
.+++.|..++. .|-.. ..-.++|..+|++...|+.+...-|.+.|
T Consensus 109 ~L~~~~r~v~~-~~~~g-----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG-----YSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp HSCHHHHHHHH-HHTTT-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 37777777777 33322 24567999999999999887764444444
No 98
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=35.16 E-value=1.1e+02 Score=23.95 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=35.9
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhh
Q 021194 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (316)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kk 114 (316)
.+++.|..++...|.... .-.++|..+|+++..|+.|...-|.+.++
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 378888888888765442 45678999999999999998766655544
No 99
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=34.29 E-value=20 Score=25.07 Aligned_cols=49 Identities=8% Similarity=0.167 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhh
Q 021194 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (316)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~K 113 (316)
+++.+..+|...|....+- ...-.++|..+|+++..|+.+...-+.+.|
T Consensus 6 L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 7888999998888321110 123467899999999999987754444444
No 100
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.19 E-value=76 Score=22.35 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHHHHHhhhHHHhhhhhchHHHHHHHHHhh
Q 021194 111 RWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKET 149 (316)
Q Consensus 111 K~Kkkq~~~~~~~lk~~~~~L~~~~~sl~~en~~L~~e~ 149 (316)
+.+...++.+...+...+..|..+...|..++..|+..+
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444455566666666666666666666666665544
No 101
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=33.79 E-value=31 Score=26.67 Aligned_cols=44 Identities=16% Similarity=0.113 Sum_probs=33.0
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhh
Q 021194 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (316)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK 111 (316)
..+++.+..+|.-.++-- .-.++|..+|+++..|+.+..+-+.|
T Consensus 33 ~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 33 KRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 349999999998765322 34789999999999999877644443
No 102
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=33.12 E-value=22 Score=26.21 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhh
Q 021194 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (316)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kk 114 (316)
+++.+..+|...|-.... ....-.++|..+|++...|+.|...-+.+.|.
T Consensus 19 L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 788899999888752100 01245678999999999999887655544443
No 103
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=33.05 E-value=25 Score=24.88 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhh
Q 021194 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (316)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~K 113 (316)
+++.+..+|...|..... ....-.++|..+|+++..|+.|...-+.+.+
T Consensus 11 L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 789999999888852100 0113458899999999999987754444443
No 104
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=32.99 E-value=22 Score=26.79 Aligned_cols=46 Identities=15% Similarity=0.062 Sum_probs=34.0
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhh
Q 021194 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (316)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kk 114 (316)
.++..|..+|.-.++-- ...++|..+|+++..|+.+..+-+.|.+.
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 48999999998864322 34679999999999999877655554443
No 105
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=32.64 E-value=19 Score=26.42 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhh
Q 021194 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (316)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kk 114 (316)
.++..+..+|...++ . ..-.++|..+|++...|+.+..+-+.|.+.
T Consensus 21 ~Lt~~e~~vl~l~~~-g-----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 21 QLTPRERDILKLIAQ-G-----LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GSCHHHHHHHHHHTT-T-----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHc-C-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 489999999988532 2 245678999999999999877655555443
No 106
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=31.47 E-value=31 Score=28.09 Aligned_cols=48 Identities=17% Similarity=0.376 Sum_probs=36.0
Q ss_pred CCCCCcCCHHHHHHHHHhh-hhcCCCCHHHHHHHHH----Hh--CCCccceeeechhh
Q 021194 58 SEKKRRLSVDQVKALEKNF-EVENKLEPERKVKLAQ----EL--GLQPRQVAVWFQNR 108 (316)
Q Consensus 58 krkRrRfT~~Ql~~LE~~F-~~~~yPs~~~r~~LA~----~L--gLs~rQVqVWFQNR 108 (316)
+++|+++|.+|...+-..+ +.++..... +||. ++ +++...|.-|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5567789999999999999 666666443 4555 77 77888888888653
No 107
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=31.15 E-value=25 Score=24.36 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhh
Q 021194 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (316)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~K 113 (316)
.+++.|..+|...++ .+ .-.++|..+|+++..|..+..+-+.+.+
T Consensus 11 ~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 11 LLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 489999999988432 22 3467999999999999887765444443
No 108
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=30.34 E-value=77 Score=25.32 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=32.2
Q ss_pred CCCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCCcc
Q 021194 60 KKRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPR 99 (316)
Q Consensus 60 kRrRfT~~Ql~~LE~~F~~-----~~yPs~~~r~~LA~~LgLs~r 99 (316)
++..+|.+|+..|+..|.. +.+.+..+...+.+.+|..+.
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 4556999999999999974 457888888888888987654
No 109
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=29.58 E-value=36 Score=25.75 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=31.2
Q ss_pred CCcCCHHHHHHHHHhh-hhc-CCCC-HHHHHHHHHHhCCCccceeeech
Q 021194 61 KRRLSVDQVKALEKNF-EVE-NKLE-PERKVKLAQELGLQPRQVAVWFQ 106 (316)
Q Consensus 61 RrRfT~~Ql~~LE~~F-~~~-~yPs-~~~r~~LA~~LgLs~rQVqVWFQ 106 (316)
+++|+.++....-..+ ... .+.+ .....++|.++|+++..|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4468988876554444 322 1222 24577899999999999999974
No 110
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=29.35 E-value=99 Score=21.99 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhHHHhhhhhchHHHHHHHHHh
Q 021194 117 LERDYGVLKANYDALKLNYDSLQHDNEALLKE 148 (316)
Q Consensus 117 ~~~~~~~lk~~~~~L~~~~~sl~~en~~L~~e 148 (316)
++.+...|...+..|..+...|..+...|...
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555554443
No 111
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=29.08 E-value=71 Score=22.99 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=15.5
Q ss_pred HHhhhhhchHHHHHHHHHhhcccccchhhhhhcc
Q 021194 130 ALKLNYDSLQHDNEALLKETIVHETDHQNKATLD 163 (316)
Q Consensus 130 ~L~~~~~sl~~en~~L~~e~~~~~~d~~lk~~L~ 163 (316)
.|......|..+|..|..++. .|++.+.
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~------~Lr~~l~ 61 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVA------RLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHh
Confidence 334444455666777777776 6666553
No 112
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=28.78 E-value=59 Score=25.41 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhh
Q 021194 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (316)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kk 114 (316)
+++.+..++...|-... .-.++|..+|+++..|+.+...-|.+.|+
T Consensus 26 L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 77888888877654432 45678999999999999988755555544
No 113
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=28.64 E-value=43 Score=25.23 Aligned_cols=36 Identities=28% Similarity=0.562 Sum_probs=23.3
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHHH
Q 021194 69 VKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (316)
Q Consensus 69 l~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~~ 118 (316)
+...+-.|+.++||.++--.+ |+ .|||.+|+..+.+
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-aR-------------RNRRRRWR~RQrQ 53 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-AR-------------RNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-HH-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-HH-------------HHHHHHHHHHHHH
Confidence 345556689999988542111 11 5899999987643
No 114
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=28.58 E-value=34 Score=27.94 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=22.3
Q ss_pred HHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhhHHH
Q 021194 70 KALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (316)
Q Consensus 70 ~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kkkq~ 117 (316)
..++-.|+.|+||.++--.+ | =.|||.+||..+.
T Consensus 16 RiIkiLyQSNPyP~peGTRq-a-------------RRNRRRRWR~RQr 49 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQR 49 (115)
T ss_dssp HHHHHHHHSSCCCCCCCCTT-T-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchh-h-------------hHhHHHHHHHHHH
Confidence 44555688999998641111 0 1599999998764
No 115
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=28.51 E-value=18 Score=25.60 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhh
Q 021194 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (316)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kk 114 (316)
+++.+..+|.-.+. .+ ...++|..+|+++..|+.+..+-+.|.+.
T Consensus 17 L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 78888888877432 22 34579999999999999887655555544
No 116
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.38 E-value=70 Score=22.39 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=25.2
Q ss_pred HHHHHHHhhhHHHhhhhhchHHHHHHHHHhhc
Q 021194 119 RDYGVLKANYDALKLNYDSLQHDNEALLKETI 150 (316)
Q Consensus 119 ~~~~~lk~~~~~L~~~~~sl~~en~~L~~e~~ 150 (316)
.++..|+..++.|+..+..|..+++.|.+++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777788888888888888888888887765
No 117
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.38 E-value=69 Score=23.76 Aligned_cols=36 Identities=28% Similarity=0.235 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhchHHHHHHHHHhhc
Q 021194 115 KQLERDYGVLKANYDALKLNYDSLQHDNEALLKETI 150 (316)
Q Consensus 115 kq~~~~~~~lk~~~~~L~~~~~sl~~en~~L~~e~~ 150 (316)
+.++.....+...+..+..++..|+.++..|..++.
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777778888888999999999888876
No 118
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=27.15 E-value=34 Score=27.85 Aligned_cols=45 Identities=13% Similarity=-0.065 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhh
Q 021194 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (316)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~K 113 (316)
+++.+..+|.-.|-... .-.++|..+|+++..|+.+...-|.+.|
T Consensus 141 L~~~~r~vl~l~~~~g~-----s~~EIA~~lgis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 141 LPEDLRMAITLRELDGL-----SYEEIAAIMDCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp SCHHHHHHHHHHHTTCC-----CHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcCC-----CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 77777777776654332 3467899999999999988765454444
No 119
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.12 E-value=47 Score=23.61 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhHHHhhhhhchHHHHHHHHH
Q 021194 118 ERDYGVLKANYDALKLNYDSLQHDNEALLK 147 (316)
Q Consensus 118 ~~~~~~lk~~~~~L~~~~~sl~~en~~L~~ 147 (316)
+.+...|...+..|......|..++..|+.
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 120
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=25.84 E-value=35 Score=28.56 Aligned_cols=45 Identities=16% Similarity=0.071 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhh
Q 021194 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (316)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~K 113 (316)
+++.+..+|...|-.. ....++|..+|++...|+.+...-|.+.|
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 7888888888776433 24567899999999999887765454444
No 121
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=25.49 E-value=44 Score=25.79 Aligned_cols=42 Identities=10% Similarity=0.130 Sum_probs=32.0
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhh
Q 021194 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNR 108 (316)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNR 108 (316)
+.++.++...+...+... . ...++|+.+|++...|..|++.-
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHcc
Confidence 458888887777777543 2 35678999999999999999643
No 122
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=25.13 E-value=80 Score=24.63 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=17.7
Q ss_pred HHHHhhhHHHhhhhhchHHHHHHHHHhhc
Q 021194 122 GVLKANYDALKLNYDSLQHDNEALLKETI 150 (316)
Q Consensus 122 ~~lk~~~~~L~~~~~sl~~en~~L~~e~~ 150 (316)
..|......|..+.+.+..++..+..+..
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d 79 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERD 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666666665
No 123
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=22.47 E-value=47 Score=24.49 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechhhHhhhhh
Q 021194 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (316)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQNRRaK~Kk 114 (316)
.+++.+..+|.-.++- + .-.++|..+|+++..|+.+..+-+.|.+.
T Consensus 29 ~Lt~~e~~vl~l~~~g--~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 29 MLTEREMEILLLIAKG--Y----SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GCCSHHHHHHHHHHTT--C----CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3899999999875432 2 23478999999999999888655555443
No 124
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=21.16 E-value=1.6e+02 Score=21.01 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhchHHHHHHHHHhh
Q 021194 115 KQLERDYGVLKANYDALKLNYDSLQHDNEALLKET 149 (316)
Q Consensus 115 kq~~~~~~~lk~~~~~L~~~~~sl~~en~~L~~e~ 149 (316)
..++.+...|...+..|......|..++..|+.-+
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666667777777777777766665544
No 125
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=20.83 E-value=68 Score=25.80 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=31.2
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeeechh
Q 021194 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (316)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~r~~LA~~LgLs~rQVqVWFQN 107 (316)
+.++.++...+...+... + ...++|+.+|++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 358888877776767543 2 3457899999999999999864
Done!