BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021196
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQS 228
ID L LE+LD+SDNA +V P +RGL L+TL+L + + G + +
Sbjct: 68 AGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQEL-GPGLFRG 126
Query: 229 IGSLPSLKTLYLSSTNFKGTVVN--QELHNFTNL 260
+ +L+ LYL N + N ++L N T+L
Sbjct: 127 LA---ALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 17/124 (13%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQS 228
G I+G+ L NL L++ DN I +L + L K+ L L G + K + +
Sbjct: 58 GVTTIEGIQYLNNLIGLELKDNQITDLT---PLKNLTKITELELSGNPL------KNVSA 108
Query: 229 IGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDL-HISQLLQSIASFTSLKY 287
I L S+KTL L+ST L +NL+ L LD + + +IS L A T+L+Y
Sbjct: 109 IAGLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISPL----AGLTNLQY 161
Query: 288 LSMG 291
LS+G
Sbjct: 162 LSIG 165
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 17/124 (13%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQS 228
G I+G+ L NL L++ DN I +L + L K+ L L G + K + +
Sbjct: 52 GVTTIEGVQYLNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPL------KNVSA 102
Query: 229 IGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDL-HISQLLQSIASFTSLKY 287
I L S+KTL L+ST L +NL+ L LD + + +IS L A T+L+Y
Sbjct: 103 IAGLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISPL----AGLTNLQY 155
Query: 288 LSMG 291
LS+G
Sbjct: 156 LSIG 159
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQS 228
ID L LE+LD+SDNA V P + GL +L+TL+L + + G + +
Sbjct: 68 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLFRG 126
Query: 229 IGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELIL 265
+ +L+ LYL + + + + NL L L
Sbjct: 127 LA---ALQYLYLQDNALQA-LPDDTFRDLGNLTHLFL 159
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQS 228
ID L LE+LD+SDNA V P + GL +L+TL+L + + G + +
Sbjct: 69 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLFRG 127
Query: 229 IGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELIL 265
+ +L+ LYL + + + + NL L L
Sbjct: 128 LA---ALQYLYLQDNALQA-LPDDTFRDLGNLTHLFL 160
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMI 220
DI L SL NL +LD+++N I+NL GL KL L LG +I+ I
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNI 276
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMI 220
DI L SL NL +LD+++N I+NL GL KL L LG +I+ I
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNI 276
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMI 220
DI L SL NL +LD+++N I+NL GL KL L LG +I+ I
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNI 276
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMI 220
DI L SL NL +LD+++N I+NL GL KL L LG +I+ I
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNI 275
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMI 220
DI L SL NL +LD+++N I+NL GL KL L LG +I+ I
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNI 280
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMI 220
DI L SL NL +LD+++N I+NL GL KL L LG +I+ I
Sbjct: 234 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNI 279
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMI 220
DI L SL NL +LD+++N I+NL GL KL L LG +I+ I
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNI 275
>pdb|2AHO|B Chain B, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|3CW2|C Chain C, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|D Chain D, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|G Chain G, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|H Chain H, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3V11|B Chain B, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 266
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 54 DDENYSDCCQWERVECNDTTGRVI--KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLI 111
DDE QW++++ D ++ KL L + WE W + A P +E
Sbjct: 87 DDERRKKNLQWKKIQRLDKILELVSQKLKLSEKDAWEQVAWKLEAKYGDPITAIEKAVKE 146
Query: 112 GNNI---AGCVE 120
G I AG E
Sbjct: 147 GEKILIDAGVPE 158
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 171 IDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGS 223
I L +D+S+N I+ L P ++GLR LN+L L G +I + S
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKS 98
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 171 IDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGS 223
I L +D+S+N I+ L P ++GLR LN+L L G +I + S
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKS 98
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 81/227 (35%), Gaps = 28/227 (12%)
Query: 94 MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFXXXXXXXXXX 153
++++ F F QL+ L L ++ G + LN LK L L NHF
Sbjct: 266 ISSTTFQCFTQLQELDLTATHLKGLPSG-----MKGLNLLKKLVLSVNHFDQLCQISAAN 320
Query: 154 XXXXXXXXXXXXXXXGSIDIKGLDSLGNLEELDMSDNAIN-NLVIPKDYRGLRKLNTLYL 212
+ + L+ LGNL+ LD+S N I + + L L TL L
Sbjct: 321 FPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNL 380
Query: 213 GGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT-----NLEELILDD 267
E + Q+ P L+ L L+ T N NL LD
Sbjct: 381 SHNEPLGLQS----QAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDT 436
Query: 268 SDLHISQLLQSIASFTSLKYLSM-------GFCTLTGALHGQGKLRV 307
S+ H+ +A L++L++ G T T L G L V
Sbjct: 437 SNQHL------LAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEV 477
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMID 221
D+ L L LEEL+MS N + P + GL L L++ +++++I+
Sbjct: 210 DMPNLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIE 258
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 32/161 (19%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGS 231
DI L L L+ L + DN I+++V GL KL LYL I+ L+++
Sbjct: 145 DITVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISD------LRALAG 195
Query: 232 LPSLKTLYLSSTNFKGTVVNQELHNFTNL---------------EELILDDSDLHISQLL 276
L +L L L F +N+ +++ +NL E+I DD D +
Sbjct: 196 LKNLDVLEL----FSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 251
Query: 277 QSIASFTS----LKYLSMGFCTLTGALHGQGKLRVSEAFMI 313
+ FT+ + Y + HG+ + E + +
Sbjct: 252 WHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTV 292
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 12/189 (6%)
Query: 113 NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSID 172
NN +G + +DTL ++ LK L L +N F
Sbjct: 325 NNFSGELP---MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Query: 173 IKGL--DSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIG 230
+ L + L+EL + +N IP +L +L+L ++ + S+G
Sbjct: 382 LPNLCQNPKNTLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYLS----GTIPSSLG 436
Query: 231 SLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 290
SL L+ L L +G + QEL LE LILD +DL ++ +++ T+L ++S+
Sbjct: 437 SLSKLRDLKLWLNMLEGEIP-QELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNWISL 494
Query: 291 GFCTLTGAL 299
LTG +
Sbjct: 495 SNNRLTGEI 503
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 32/161 (19%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGS 231
DI L L L+ L + DN I+++V GL KL LYL I+ L+++
Sbjct: 148 DITVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISD------LRALAG 198
Query: 232 LPSLKTLYLSSTNFKGTVVNQELHNFTNL---------------EELILDDSDLHISQLL 276
L +L L L F +N+ +++ +NL E+I DD D +
Sbjct: 199 LKNLDVLEL----FSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 254
Query: 277 QSIASFTS----LKYLSMGFCTLTGALHGQGKLRVSEAFMI 313
+ FT+ + Y + HG+ + E + +
Sbjct: 255 WHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTV 295
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 170 SIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI 229
+I+ SLG+LE LD+S N ++NL ++ L L L L G + + +
Sbjct: 90 TIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTFLNLLGNPYKTLGETSLF--- 145
Query: 230 GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYL 288
L L+ L + + + + ++ T LEEL +D SDL S +S+ S ++ +L
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHL 203
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 12/189 (6%)
Query: 113 NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSID 172
NN +G + +DTL ++ LK L L +N F
Sbjct: 328 NNFSGELP---MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Query: 173 IKGL--DSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIG 230
+ L + L+EL + +N IP +L +L+L ++ + S+G
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYLS----GTIPSSLG 439
Query: 231 SLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 290
SL L+ L L +G + QEL LE LILD +DL ++ +++ T+L ++S+
Sbjct: 440 SLSKLRDLKLWLNMLEGEIP-QELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNWISL 497
Query: 291 GFCTLTGAL 299
LTG +
Sbjct: 498 SNNRLTGEI 506
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 170 SIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI 229
+I+ SL +L L ++ N I +L + + GL L L T +A ++ I
Sbjct: 68 TIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP----I 122
Query: 230 GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
G L +LK L ++ + + + N TNLE L L + +
Sbjct: 123 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQS 228
+I+ SLG+LE LD+S N ++NL ++ L L L L G + + +
Sbjct: 63 NTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTFLNLLGNPYKTLGETSLF-- 119
Query: 229 IGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYL 288
L L+ L + + + + ++ T LEEL +D SDL S +S+ S ++ +L
Sbjct: 120 -SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHL 177
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 170 SIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI 229
+I+ SL +L L ++ N I +L + + GL L L T +A ++ I
Sbjct: 67 TIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP----I 121
Query: 230 GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
G L +LK L ++ + + + N TNLE L L + +
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 170 SIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI 229
+I+ SL +L L ++ N I +L + + GL L L T +A ++ I
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP----I 120
Query: 230 GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
G L +LK L ++ + + + N TNLE L L + +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 182 LEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT---EIAMIDGSKVLQSIGSLPSLKTL 238
++ELD++ +N L P G+ L L L ++ I+ + S PSL+ L
Sbjct: 279 VQELDLTAAHLNGL--PSGIEGMNSLKKLVLNANSFDQLCQINAA-------SFPSLRDL 329
Query: 239 YLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQ-SIASFTSLKYLSMGF 292
Y+ K + + L NL++L L SD+ S + + L+YL++ +
Sbjct: 330 YIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSY 384
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 170 SIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI 229
+I+ SL +L L ++ N I +L + + GL L L T +A ++ I
Sbjct: 67 TIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP----I 121
Query: 230 GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
G L +LK L ++ + + + N TNLE L L + +
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 170 SIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI 229
+I+ SL +L L ++ N I +L + + GL L L T +A ++ I
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP----I 120
Query: 230 GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
G L +LK L ++ + + + N TNLE L L + +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 170 SIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI 229
+I+ SL +L L ++ N I +L + + GL L L T +A ++ I
Sbjct: 90 TIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP----I 144
Query: 230 GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
G L +LK L ++ + + + N TNLE L L + +
Sbjct: 145 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 170 SIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI 229
+I+ SL +L L ++ N I +L + + GL L L T +A ++ I
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP----I 120
Query: 230 GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
G L +LK L ++ + + + N TNLE L L + +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 175 GLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPS 234
G+LE++++S N + ++ + L KL+ + + + + Q+ LP+
Sbjct: 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN---LPN 105
Query: 235 LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSD 269
L+ L +S+T K ++H +L++++LD D
Sbjct: 106 LQYLLISNTGIKHL---PDVHKIHSLQKVLLDIQD 137
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 170 SIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI 229
+I+ SL +L L ++ N I +L + + GL L L T +A ++ I
Sbjct: 68 TIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVALETNLASLENFP----I 122
Query: 230 GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
G L +LK L ++ + + + N TNLE L L + +
Sbjct: 123 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 173 IKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSL 232
I+G++ L NLE L+++ N I ++ L KL LY+G +I I ++ +L
Sbjct: 59 IQGIEYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKITDI------SALQNL 109
Query: 233 PSLKTLYLSSTNF 245
+L+ LYL+ N
Sbjct: 110 TNLRELYLNEDNI 122
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 181 NLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTE--------IAMIDGSKVLQSIG 230
NL+ LD+S NA + L I K++ + +L L L T IA ++ SKVL +G
Sbjct: 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 175 GLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPS 234
G+LE++++S N + ++ + L KL+ + + + + Q+ LP+
Sbjct: 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN---LPN 105
Query: 235 LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSD 269
L+ L +S+T K ++H +L++++LD D
Sbjct: 106 LQYLLISNTGIKHL---PDVHKIHSLQKVLLDIQD 137
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT 237
+L L LD+S N + +L + RGL +L LYL G E+ + + + P L+
Sbjct: 99 TLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPPGLLTPT----PKLEK 153
Query: 238 LYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
L L++ N L+ NL+ L+L ++ L+
Sbjct: 154 LSLANNNLTELPAGL-LNGLENLDTLLLQENSLY 186
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT 237
+L L LD+S N + +L + RGL +L LYL G E+ + + + P L+
Sbjct: 98 TLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPPGLLTPT----PKLEK 152
Query: 238 LYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
L L++ N L+ NL+ L+L ++ L+
Sbjct: 153 LSLANNNLTELPAGL-LNGLENLDTLLLQENSLY 185
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 32/150 (21%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGS 231
DI L L L+ L + DN I+++V GL KL LYL I+ L+++
Sbjct: 146 DITVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISD------LRALAG 196
Query: 232 LPSLKTLYLSSTNFKGTVVNQELHNFTNL---------------EELILDDSDLHISQLL 276
L +L L L F +N+ +++ +NL E+I DD D +
Sbjct: 197 LKNLDVLEL----FSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 252
Query: 277 QSIASFTSLKYLSMGFCTLTGALHGQGKLR 306
+ FT+ + F G+ K R
Sbjct: 253 WHLPEFTN----EVSFIFYQPVTIGKAKAR 278
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 32/150 (21%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGS 231
DI L L L+ L + DN I+++V GL KL LYL I+ L+++
Sbjct: 148 DITVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISD------LRALAG 198
Query: 232 LPSLKTLYLSSTNFKGTVVNQELHNFTNL---------------EELILDDSDLHISQLL 276
L +L L L F +N+ +++ +NL E+I DD D +
Sbjct: 199 LKNLDVLEL----FSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 254
Query: 277 QSIASFTSLKYLSMGFCTLTGALHGQGKLR 306
+ FT+ + F G+ K R
Sbjct: 255 WHLPEFTN----EVSFIFYQPVTIGKAKAR 280
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 32/150 (21%)
Query: 172 DIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGS 231
DI L L L+ L + DN I+++V GL KL LYL I+ L+++
Sbjct: 168 DITVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISD------LRALAG 218
Query: 232 LPSLKTLYLSSTNFKGTVVNQELHNFTNL---------------EELILDDSDLHISQLL 276
L +L L L F +N+ +++ +NL E+I DD D +
Sbjct: 219 LKNLDVLEL----FSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 274
Query: 277 QSIASFTSLKYLSMGFCTLTGALHGQGKLR 306
+ FT+ + F G+ K R
Sbjct: 275 WHLPEFTN----EVSFIFYQPVTIGKAKAR 300
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT 237
+L L LD+S N + +L + RGL +L LYL G E+ + + + P L+
Sbjct: 98 TLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPPGLLTPT----PKLEK 152
Query: 238 LYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
L L++ N L+ NL+ L+L ++ L+
Sbjct: 153 LSLANNNLTELPAGL-LNGLENLDTLLLQENSLY 185
>pdb|4G6F|H Chain H, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
pdb|4G6F|B Chain B, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
Length = 236
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 122 EGLDTLSRLNNLKFLYLDYNH 142
EG T+SRLN++ FLYL+ N+
Sbjct: 67 EGRFTISRLNSINFLYLEMNN 87
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 182 LEELDMSD-NAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYL 240
+ LD+S N IP L LN LY+GG + + +I L L LY+
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV---GPIPPAIAKLTQLHYLYI 108
Query: 241 SSTNFKGTV 249
+ TN G +
Sbjct: 109 THTNVSGAI 117
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTL 238
LG L LD+ N I + +++RGLR + +YL + + S S +PSL+ L
Sbjct: 404 LGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTS----SFALVPSLQRL 459
Query: 239 YLSSTNFKGTVVNQELHNFTNLEEL-ILDDSDLHISQL 275
L K ++ F L L ILD S+ +I+ +
Sbjct: 460 MLRRVALKNVDISPS--PFRPLRNLTILDLSNNNIANI 495
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT 237
+L L LD+S N + +L + RGL +L LYL G E+ + + + P L+
Sbjct: 98 TLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPPGLLTPT----PKLEK 152
Query: 238 LYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
L L++ N L+ NL+ L+L ++ L+
Sbjct: 153 LSLANNNLTELPAGL-LNGLENLDTLLLQENSLY 185
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT 237
+L L LD+S N + +L + RGL +L LYL G E+ + + + P L+
Sbjct: 98 TLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPPGLLTPT----PKLEK 152
Query: 238 LYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271
L L++ N L+ NL+ L+L ++ L+
Sbjct: 153 LSLANNNLTELPAGL-LNGLENLDTLLLQENSLY 185
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 178 SLGNLEELDMSDNAINNLVIPKDYRGLR----KLNTLYLGGTEIAMIDGSKVLQSIGSLP 233
S +L+ELD+S N + N I GL KL TL+L +I + + + +
Sbjct: 221 SKASLQELDLSSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQ 280
Query: 234 SLKTLYLSSTNFK 246
SLK L L+S K
Sbjct: 281 SLKELSLASNELK 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,625,950
Number of Sequences: 62578
Number of extensions: 327016
Number of successful extensions: 816
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 107
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)