Query 021196
Match_columns 316
No_of_seqs 409 out of 3986
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:21:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-37 2.8E-42 314.0 21.0 266 28-313 27-315 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.1E-28 1.3E-32 243.9 14.3 200 102-313 139-339 (968)
3 KOG4194 Membrane glycoprotein 99.9 8.9E-23 1.9E-27 183.4 3.1 224 72-313 123-348 (873)
4 KOG4194 Membrane glycoprotein 99.9 8.9E-23 1.9E-27 183.4 1.5 221 75-313 174-423 (873)
5 KOG0444 Cytoskeletal regulator 99.8 2.9E-22 6.3E-27 181.6 -2.7 217 75-313 79-323 (1255)
6 KOG0444 Cytoskeletal regulator 99.8 5.8E-22 1.3E-26 179.7 -5.1 199 96-312 143-368 (1255)
7 KOG0617 Ras suppressor protein 99.8 5.2E-22 1.1E-26 153.1 -5.9 185 98-299 28-215 (264)
8 KOG0617 Ras suppressor protein 99.8 6.3E-22 1.4E-26 152.7 -5.7 167 127-305 29-195 (264)
9 KOG0472 Leucine-rich repeat pr 99.8 1E-21 2.2E-26 169.6 -9.3 213 75-313 69-304 (565)
10 cd00116 LRR_RI Leucine-rich re 99.7 2.8E-18 6.1E-23 152.3 6.2 221 75-298 52-293 (319)
11 PLN03210 Resistant to P. syrin 99.7 1.7E-16 3.7E-21 162.2 16.9 100 206-312 779-899 (1153)
12 cd00116 LRR_RI Leucine-rich re 99.7 3.6E-18 7.7E-23 151.7 3.5 236 75-313 24-285 (319)
13 PRK15370 E3 ubiquitin-protein 99.7 1E-15 2.2E-20 148.0 18.8 237 24-296 57-380 (754)
14 PLN03150 hypothetical protein; 99.7 1.7E-16 3.6E-21 152.3 13.2 150 25-191 367-526 (623)
15 PLN03210 Resistant to P. syrin 99.7 4.2E-16 9.1E-21 159.3 15.5 184 99-301 630-843 (1153)
16 PRK15387 E3 ubiquitin-protein 99.7 2.2E-16 4.8E-21 152.0 12.0 81 206-301 383-463 (788)
17 KOG4237 Extracellular matrix p 99.7 9.4E-18 2E-22 144.9 -0.0 228 74-314 67-354 (498)
18 KOG0472 Leucine-rich repeat pr 99.7 1.3E-19 2.7E-24 156.8 -11.8 211 76-313 47-282 (565)
19 KOG0618 Serine/threonine phosp 99.6 2.7E-18 5.9E-23 161.9 -4.9 104 182-296 361-465 (1081)
20 PRK15370 E3 ubiquitin-protein 99.6 6.3E-16 1.4E-20 149.4 10.8 182 75-296 200-401 (754)
21 PRK15387 E3 ubiquitin-protein 99.6 5.7E-15 1.2E-19 142.4 11.6 195 75-313 223-452 (788)
22 KOG0618 Serine/threonine phosp 99.6 4E-17 8.6E-22 154.1 -5.5 195 103-314 241-460 (1081)
23 KOG0532 Leucine-rich repeat (L 99.5 3.7E-16 8.1E-21 140.8 -5.2 190 102-312 74-266 (722)
24 KOG4237 Extracellular matrix p 99.5 6.4E-16 1.4E-20 133.7 -4.0 197 104-312 68-328 (498)
25 KOG0532 Leucine-rich repeat (L 99.4 3.8E-15 8.3E-20 134.3 -4.9 192 76-294 77-271 (722)
26 COG4886 Leucine-rich repeat (L 99.4 1.4E-13 3.1E-18 125.9 5.3 183 99-301 112-295 (394)
27 PLN03150 hypothetical protein; 99.4 1.4E-12 3E-17 125.4 9.5 118 181-305 419-537 (623)
28 COG4886 Leucine-rich repeat (L 99.3 5.3E-13 1.2E-17 122.1 4.4 187 107-313 97-284 (394)
29 KOG3207 Beta-tubulin folding c 99.3 1.9E-13 4.1E-18 119.9 -0.3 210 76-297 123-340 (505)
30 KOG3207 Beta-tubulin folding c 99.3 2.4E-13 5.2E-18 119.3 -0.7 205 100-312 118-332 (505)
31 KOG1909 Ran GTPase-activating 99.3 9E-13 1.9E-17 112.7 2.8 119 177-295 182-310 (382)
32 PF14580 LRR_9: Leucine-rich r 99.3 2.7E-12 5.8E-17 102.6 4.7 104 179-290 41-147 (175)
33 PF14580 LRR_9: Leucine-rich r 99.2 6.7E-12 1.4E-16 100.4 4.9 85 130-218 41-126 (175)
34 KOG1259 Nischarin, modulator o 99.2 5.3E-12 1.2E-16 106.2 1.8 135 151-298 280-414 (490)
35 KOG1909 Ran GTPase-activating 99.2 9.9E-12 2.1E-16 106.5 3.3 238 73-313 29-305 (382)
36 KOG1259 Nischarin, modulator o 99.1 6.1E-11 1.3E-15 100.0 2.5 127 175-314 279-407 (490)
37 PF08263 LRRNT_2: Leucine rich 99.0 6.5E-10 1.4E-14 67.5 4.5 40 29-70 2-43 (43)
38 PF13855 LRR_8: Leucine rich r 98.9 6.4E-10 1.4E-14 73.3 2.9 61 233-295 1-61 (61)
39 PF13855 LRR_8: Leucine rich r 98.9 1.9E-09 4.1E-14 71.1 3.5 57 157-215 3-59 (61)
40 KOG2982 Uncharacterized conser 98.8 1.1E-09 2.4E-14 92.3 2.2 207 101-311 69-284 (418)
41 KOG0531 Protein phosphatase 1, 98.8 7.8E-10 1.7E-14 101.8 -0.4 175 100-296 92-268 (414)
42 KOG2120 SCF ubiquitin ligase, 98.8 1.8E-10 4E-15 96.9 -4.7 183 103-293 185-373 (419)
43 KOG2120 SCF ubiquitin ligase, 98.7 4E-10 8.7E-15 94.9 -5.2 175 131-313 185-370 (419)
44 COG5238 RNA1 Ran GTPase-activa 98.7 2.9E-08 6.2E-13 82.9 5.0 225 73-300 29-289 (388)
45 COG5238 RNA1 Ran GTPase-activa 98.6 8E-09 1.7E-13 86.1 0.4 198 98-296 87-316 (388)
46 KOG1859 Leucine-rich repeat pr 98.6 6.5E-10 1.4E-14 103.7 -7.0 127 156-295 165-291 (1096)
47 KOG4658 Apoptotic ATPase [Sign 98.6 4.5E-08 9.8E-13 96.9 4.4 182 102-296 544-730 (889)
48 KOG4579 Leucine-rich repeat (L 98.5 3.4E-09 7.3E-14 79.5 -3.2 134 157-301 29-164 (177)
49 KOG0531 Protein phosphatase 1, 98.5 8.2E-09 1.8E-13 95.0 -1.6 106 73-194 94-200 (414)
50 KOG4658 Apoptotic ATPase [Sign 98.5 4E-08 8.8E-13 97.3 2.3 151 102-265 522-675 (889)
51 KOG1859 Leucine-rich repeat pr 98.5 5.5E-09 1.2E-13 97.7 -3.6 169 127-313 105-286 (1096)
52 KOG2982 Uncharacterized conser 98.4 1.3E-07 2.7E-12 80.1 3.4 183 74-266 71-287 (418)
53 PF12799 LRR_4: Leucine Rich r 98.3 9.6E-07 2.1E-11 53.6 4.0 36 259-296 2-37 (44)
54 KOG4579 Leucine-rich repeat (L 98.3 1.7E-08 3.8E-13 75.7 -4.4 132 133-276 29-163 (177)
55 KOG3665 ZYG-1-like serine/thre 98.3 6.9E-07 1.5E-11 86.5 4.3 153 131-290 122-282 (699)
56 KOG3665 ZYG-1-like serine/thre 98.2 7.2E-07 1.6E-11 86.3 3.1 151 155-311 122-280 (699)
57 PF12799 LRR_4: Leucine Rich r 98.2 2.9E-06 6.4E-11 51.5 4.3 35 207-246 3-37 (44)
58 PRK15386 type III secretion pr 98.0 1.7E-05 3.7E-10 71.4 6.6 137 99-268 48-187 (426)
59 KOG1644 U2-associated snRNP A' 97.9 2.8E-05 6.1E-10 62.5 5.6 84 132-218 43-126 (233)
60 KOG1644 U2-associated snRNP A' 97.8 4.1E-05 9E-10 61.6 5.5 110 103-218 42-153 (233)
61 PRK15386 type III secretion pr 97.7 0.00011 2.3E-09 66.5 6.8 132 75-244 53-188 (426)
62 KOG2739 Leucine-rich acidic nu 97.5 5.6E-05 1.2E-09 63.2 2.7 66 151-217 61-128 (260)
63 PF13306 LRR_5: Leucine rich r 97.3 0.0014 3.1E-08 49.6 7.8 13 175-187 53-65 (129)
64 KOG4308 LRR-containing protein 97.3 2.5E-06 5.5E-11 79.2 -9.3 190 105-296 89-303 (478)
65 KOG2739 Leucine-rich acidic nu 97.2 0.00019 4.2E-09 60.0 2.5 103 102-212 42-150 (260)
66 KOG2123 Uncharacterized conser 97.2 2E-05 4.4E-10 66.4 -3.8 102 179-289 18-123 (388)
67 KOG2123 Uncharacterized conser 97.2 2E-05 4.3E-10 66.5 -4.0 68 177-250 38-105 (388)
68 PF13306 LRR_5: Leucine rich r 97.1 0.0038 8.3E-08 47.2 8.2 108 96-214 5-112 (129)
69 PF00560 LRR_1: Leucine Rich R 96.2 0.0023 5E-08 32.3 1.0 16 285-301 2-17 (22)
70 PF00560 LRR_1: Leucine Rich R 96.1 0.0028 6E-08 32.0 1.0 11 158-168 3-13 (22)
71 KOG4341 F-box protein containi 96.0 0.00066 1.4E-08 60.5 -2.6 84 229-313 290-379 (483)
72 KOG4308 LRR-containing protein 95.9 6E-05 1.3E-09 70.2 -10.0 195 76-272 89-304 (478)
73 KOG1947 Leucine rich repeat pr 95.6 0.007 1.5E-07 56.7 2.3 133 154-290 187-328 (482)
74 KOG1947 Leucine rich repeat pr 95.4 0.011 2.3E-07 55.4 2.7 112 130-245 187-307 (482)
75 KOG4341 F-box protein containi 94.1 0.038 8.2E-07 49.7 2.5 139 154-294 293-437 (483)
76 PF13504 LRR_7: Leucine rich r 93.7 0.048 1E-06 25.5 1.4 9 236-244 4-12 (17)
77 smart00370 LRR Leucine-rich re 92.9 0.12 2.6E-06 26.9 2.4 17 234-251 3-19 (26)
78 smart00369 LRR_TYP Leucine-ric 92.9 0.12 2.6E-06 26.9 2.4 17 234-251 3-19 (26)
79 KOG0473 Leucine-rich repeat pr 92.0 0.0023 4.9E-08 53.0 -7.4 92 171-271 33-124 (326)
80 PF13516 LRR_6: Leucine Rich r 91.6 0.087 1.9E-06 26.9 0.9 15 258-272 2-16 (24)
81 KOG0473 Leucine-rich repeat pr 91.4 0.0032 6.8E-08 52.2 -7.3 93 196-297 33-125 (326)
82 KOG3864 Uncharacterized conser 91.0 0.074 1.6E-06 43.2 0.3 83 205-292 101-185 (221)
83 KOG3864 Uncharacterized conser 87.3 0.13 2.7E-06 41.9 -0.9 81 182-267 103-185 (221)
84 smart00364 LRR_BAC Leucine-ric 76.6 1.8 4E-05 22.6 1.3 16 234-250 3-18 (26)
85 smart00365 LRR_SD22 Leucine-ri 76.3 2.6 5.7E-05 22.1 1.9 14 258-271 2-15 (26)
86 KOG4242 Predicted myosin-I-bin 75.7 4.8 0.0001 37.3 4.6 18 284-301 355-372 (553)
87 smart00368 LRR_RI Leucine rich 75.5 2.4 5.1E-05 22.5 1.7 14 283-296 2-15 (28)
88 KOG3763 mRNA export factor TAP 52.4 13 0.00028 35.2 2.8 38 204-243 217-254 (585)
89 KOG3763 mRNA export factor TAP 48.0 14 0.0003 35.1 2.3 66 230-299 215-286 (585)
90 TIGR00864 PCC polycystin catio 45.7 16 0.00035 41.4 2.7 31 211-246 1-32 (2740)
91 smart00367 LRR_CC Leucine-rich 43.8 18 0.00038 18.5 1.4 11 131-141 2-12 (26)
92 KOG1665 AFH1-interacting prote 34.4 39 0.00084 28.2 2.6 13 206-218 197-209 (302)
93 TIGR00864 PCC polycystin catio 32.8 26 0.00057 39.9 1.9 32 137-168 1-32 (2740)
94 PF13260 DUF4051: Protein of u 21.5 59 0.0013 19.7 1.2 16 28-43 29-44 (54)
95 KOG4242 Predicted myosin-I-bin 21.4 83 0.0018 29.6 2.6 62 182-245 216-280 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-37 Score=314.00 Aligned_cols=266 Identities=27% Similarity=0.412 Sum_probs=186.8
Q ss_pred cHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCCCcccceEEcCCCCcEEEEEcCCCCcccccccccccccccCCCCCcE
Q 021196 28 LEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLES 107 (316)
Q Consensus 28 ~~~~~~aL~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~ 107 (316)
.++|++||++||+++.+|...+.+| +...+||.|.||+|+. .++|+.|+|+++++.+ .. +..+..+++|+.
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w---~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~--~~---~~~~~~l~~L~~ 97 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNW---NSSADVCLWQGITCNN-SSRVVSIDLSGKNISG--KI---SSAIFRLPYIQT 97 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCC---CCCCCCCcCcceecCC-CCcEEEEEecCCCccc--cC---ChHHhCCCCCCE
Confidence 5689999999999998887778899 4577899999999985 5799999999987632 21 334566777777
Q ss_pred EEccCCccCCccccccccccCC----------------------CCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCc
Q 021196 108 LYLIGNNIAGCVENEGLDTLSR----------------------LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGN 165 (316)
Q Consensus 108 L~L~~n~~~~~~~~~~~~~l~~----------------------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 165 (316)
|+|++|.+.|.+|... +.. +++|++|++++|.+++.+|..++++++|++|++++|
T Consensus 98 L~Ls~n~~~~~ip~~~---~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n 174 (968)
T PLN00113 98 INLSNNQLSGPIPDDI---FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN 174 (968)
T ss_pred EECCCCccCCcCChHH---hccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccC
Confidence 7777777766666431 223 445555555555555555666666666666666666
Q ss_pred ccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCC
Q 021196 166 RLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNF 245 (316)
Q Consensus 166 ~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l 245 (316)
.+.+.+|. .+.++++|++|++++|.+.+.+|. .+.++++|++|++++|.++ + .+|..++++++|++|++++|.+
T Consensus 175 ~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~-~---~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 175 VLVGKIPN-SLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLS-G---EIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred cccccCCh-hhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECcCCccC-C---cCChhHhcCCCCCEEECcCcee
Confidence 66666665 566666666666666666666655 6666667777777776665 5 5666667777777777777777
Q ss_pred CCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196 246 KGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 246 ~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
++.+|. .++++++|++|++++|.+.+ .+|..+..+++|++|++++|++.|.+|. ++++++|+.|++
T Consensus 249 ~~~~p~-~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 315 (968)
T PLN00113 249 TGPIPS-SLGNLKNLQYLFLYQNKLSG-PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315 (968)
T ss_pred ccccCh-hHhCCCCCCEEECcCCeeec-cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEEC
Confidence 766665 66777777777777777776 6777777777777777777777777776 666777776654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=6.1e-28 Score=243.88 Aligned_cols=200 Identities=25% Similarity=0.335 Sum_probs=181.0
Q ss_pred CCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCC
Q 021196 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGN 181 (316)
Q Consensus 102 l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~ 181 (316)
+++|++|++++|.+.+.+|. .++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|. .+.++++
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~ 213 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPN----DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKS 213 (968)
T ss_pred cCCCCEEECcCCcccccCCh----HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCC
Confidence 44555555555555555543 488999999999999999999999999999999999999999998887 8999999
Q ss_pred CCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCC
Q 021196 182 LEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLE 261 (316)
Q Consensus 182 L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~ 261 (316)
|++|++++|++++.+|. .+.++++|++|++++|.++ + .+|..++++++|++|++++|.+++.+|. .+.++++|+
T Consensus 214 L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~-~---~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~ 287 (968)
T PLN00113 214 LKWIYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLT-G---PIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLI 287 (968)
T ss_pred ccEEECcCCccCCcCCh-hHhcCCCCCEEECcCceec-c---ccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcC
Confidence 99999999999998888 8999999999999999998 7 8899999999999999999999999987 889999999
Q ss_pred EEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196 262 ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 262 ~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
+|++++|.+.+ .+|..+.++++|+.|++++|.++|.+|. ++.+++|+.|++
T Consensus 288 ~L~Ls~n~l~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 288 SLDLSDNSLSG-EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred EEECcCCeecc-CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 99999999999 8999999999999999999999999998 889999988765
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=8.9e-23 Score=183.39 Aligned_cols=224 Identities=25% Similarity=0.277 Sum_probs=166.6
Q ss_pred CCCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccccccc
Q 021196 72 TTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL 151 (316)
Q Consensus 72 ~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~ 151 (316)
..++++.|+|.+|.+.+. ..+.+..++.|+.||||.|.++... . ..|..-.++++|+|++|.++..-...|
T Consensus 123 ~sghl~~L~L~~N~I~sv-----~se~L~~l~alrslDLSrN~is~i~-~---~sfp~~~ni~~L~La~N~It~l~~~~F 193 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSV-----TSEELSALPALRSLDLSRNLISEIP-K---PSFPAKVNIKKLNLASNRITTLETGHF 193 (873)
T ss_pred cccceeEEeeeccccccc-----cHHHHHhHhhhhhhhhhhchhhccc-C---CCCCCCCCceEEeeccccccccccccc
Confidence 357889999998877432 2445677888999999999886533 2 236667789999999999987777788
Q ss_pred CCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhcC
Q 021196 152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIG 230 (316)
Q Consensus 152 ~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~ 230 (316)
.++.+|..|.|+.|+++ .+|...|.++++|+.|+|..|++.-.--. .|.++++|+.|.+.+|++. .+- ..|.
T Consensus 194 ~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~l-tFqgL~Sl~nlklqrN~I~-----kL~DG~Fy 266 (873)
T KOG4194|consen 194 DSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGL-TFQGLPSLQNLKLQRNDIS-----KLDDGAFY 266 (873)
T ss_pred cccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhh-hhcCchhhhhhhhhhcCcc-----cccCccee
Confidence 88899999999999988 78887888899999999999987653233 6778888888888888776 222 2566
Q ss_pred CCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchh
Q 021196 231 SLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSE 309 (316)
Q Consensus 231 ~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~ 309 (316)
.+.++++|+|+.|+++ .+-.+++.+++.|+.|++++|.|.. .-++.+..+++|++|+|++|+++.--+. +.-+..|+
T Consensus 267 ~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~r-ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQR-IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred eecccceeecccchhh-hhhcccccccchhhhhccchhhhhe-eecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 7777888888888777 4555567777888888888887775 4456777777888888888887744444 55566666
Q ss_pred hhhh
Q 021196 310 AFMI 313 (316)
Q Consensus 310 ~l~i 313 (316)
+|.+
T Consensus 345 ~LnL 348 (873)
T KOG4194|consen 345 ELNL 348 (873)
T ss_pred hhcc
Confidence 5543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=8.9e-23 Score=183.38 Aligned_cols=221 Identities=24% Similarity=0.249 Sum_probs=115.9
Q ss_pred cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (316)
Q Consensus 75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 154 (316)
.+..|+|++|+++..+ ...|..+.+|..|.|+.|.++...+. .|.++++|+.|+|..|.+.-.---.|.++
T Consensus 174 ni~~L~La~N~It~l~-----~~~F~~lnsL~tlkLsrNrittLp~r----~Fk~L~~L~~LdLnrN~irive~ltFqgL 244 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLE-----TGHFDSLNSLLTLKLSRNRITTLPQR----SFKRLPKLESLDLNRNRIRIVEGLTFQGL 244 (873)
T ss_pred CceEEeeccccccccc-----cccccccchheeeecccCcccccCHH----HhhhcchhhhhhccccceeeehhhhhcCc
Confidence 3445555555443221 23345555555555655555433322 25556666666666665542212334444
Q ss_pred CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCC
Q 021196 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPS 234 (316)
Q Consensus 155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~ 234 (316)
++|+.|.|..|.+. .+.+..|..+.++++|+|+.|+++..--. ++.++++|++|++++|.+. . .-++.|..+++
T Consensus 245 ~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g-~lfgLt~L~~L~lS~NaI~-r---ih~d~Wsftqk 318 (873)
T KOG4194|consen 245 PSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEG-WLFGLTSLEQLDLSYNAIQ-R---IHIDSWSFTQK 318 (873)
T ss_pred hhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcc-cccccchhhhhccchhhhh-e---eecchhhhccc
Confidence 45555555444443 33334555556666666666665553333 5566666666666666665 2 22345556666
Q ss_pred CCEEECCCCCCCCccchhh------------------------hcCCCCCCEEECCCCCCCcchhh---hhhcCCCCCcE
Q 021196 235 LKTLYLSSTNFKGTVVNQE------------------------LHNFTNLEELILDDSDLHISQLL---QSIASFTSLKY 287 (316)
Q Consensus 235 L~~L~l~~n~l~g~~p~~~------------------------~~~l~~L~~L~L~~n~l~g~~ip---~~l~~~~~L~~ 287 (316)
|++|+|++|+++ +++++. |..+++|+.|||+.|.+++ .|- ..+..+++|+.
T Consensus 319 L~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 319 LKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE-EEecchhhhccchhhhh
Confidence 666666666665 444434 4445555555555555554 332 23445666666
Q ss_pred EEccCcccccccCC--Cccccchhhhhh
Q 021196 288 LSMGFCTLTGALHG--QGKLRVSEAFMI 313 (316)
Q Consensus 288 L~l~~N~l~g~ip~--~~~l~~L~~l~i 313 (316)
|++.+|++. .||. +..++.|+.|++
T Consensus 397 L~l~gNqlk-~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 397 LRLTGNQLK-SIPKRAFSGLEALEHLDL 423 (873)
T ss_pred eeecCceee-ecchhhhccCcccceecC
Confidence 666666664 4454 566666666553
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=2.9e-22 Score=181.60 Aligned_cols=217 Identities=25% Similarity=0.268 Sum_probs=136.8
Q ss_pred cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccc-cCC
Q 021196 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS-LGG 153 (316)
Q Consensus 75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~ 153 (316)
++.++++.+|++...|. |..+.++..|+.||||+|++... |.. +..-+++-+|+||+|.+. .||.. +-+
T Consensus 79 ~LRsv~~R~N~LKnsGi----P~diF~l~dLt~lDLShNqL~Ev-P~~----LE~AKn~iVLNLS~N~Ie-tIPn~lfin 148 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGI----PTDIFRLKDLTILDLSHNQLREV-PTN----LEYAKNSIVLNLSYNNIE-TIPNSLFIN 148 (1255)
T ss_pred hhHHHhhhccccccCCC----Cchhcccccceeeecchhhhhhc-chh----hhhhcCcEEEEcccCccc-cCCchHHHh
Confidence 34444455554433332 33455566666666666665432 221 444455555556555554 33433 235
Q ss_pred CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCC------------------------cCCC-ccccccccCCCCCC
Q 021196 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN------------------------AINN-LVIPKDYRGLRKLN 208 (316)
Q Consensus 154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n------------------------~~~~-~~p~~~~~~l~~L~ 208 (316)
++.|-+||||+|++. .+|+ .+..+..|++|+|++| +-+- .+|. ++..+.+|.
T Consensus 149 LtDLLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~ 225 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLR 225 (1255)
T ss_pred hHhHhhhccccchhh-hcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhh
Confidence 555555555555554 4444 4444445555555544 3221 2455 677778888
Q ss_pred EEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEE
Q 021196 209 TLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYL 288 (316)
Q Consensus 209 ~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L 288 (316)
.++++.|++. .+|+.+.++++|+.|+||+|+++ .+-. ..+...+|++|+++.|+++ .+|+.++++++|+.|
T Consensus 226 dvDlS~N~Lp-----~vPecly~l~~LrrLNLS~N~it-eL~~-~~~~W~~lEtLNlSrNQLt--~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 226 DVDLSENNLP-----IVPECLYKLRNLRRLNLSGNKIT-ELNM-TEGEWENLETLNLSRNQLT--VLPDAVCKLTKLTKL 296 (1255)
T ss_pred hccccccCCC-----cchHHHhhhhhhheeccCcCcee-eeec-cHHHHhhhhhhccccchhc--cchHHHhhhHHHHHH
Confidence 8888888887 78888888888888888888887 4544 5566677888888888887 688888888888888
Q ss_pred EccCcccc-cccCC-Cccccchhhhhh
Q 021196 289 SMGFCTLT-GALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 289 ~l~~N~l~-g~ip~-~~~l~~L~~l~i 313 (316)
-+.+|+++ .-||+ +|++..|+.++.
T Consensus 297 y~n~NkL~FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 297 YANNNKLTFEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred HhccCcccccCCccchhhhhhhHHHHh
Confidence 88888765 44666 888887777653
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=5.8e-22 Score=179.67 Aligned_cols=199 Identities=24% Similarity=0.277 Sum_probs=109.8
Q ss_pred cccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcc-------------------------cccc
Q 021196 96 ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-------------------------IFSS 150 (316)
Q Consensus 96 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-------------------------~p~~ 150 (316)
.+.|.+++.|-.||||+|.+....|. +..+.+|++|.|++|.+... +|.+
T Consensus 143 n~lfinLtDLLfLDLS~NrLe~LPPQ-----~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 143 NSLFINLTDLLFLDLSNNRLEMLPPQ-----IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred chHHHhhHhHhhhccccchhhhcCHH-----HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc
Confidence 34567777888888888877554443 67777788888888765422 3444
Q ss_pred cCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcC
Q 021196 151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIG 230 (316)
Q Consensus 151 ~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~ 230 (316)
+..+.+|..+|+|.|.+. .+|. .+.++.+|+.|+|++|.++... . ....-.+|++|+++.|+++ .+|..+.
T Consensus 218 ld~l~NL~dvDlS~N~Lp-~vPe-cly~l~~LrrLNLS~N~iteL~-~-~~~~W~~lEtLNlSrNQLt-----~LP~avc 288 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENNLP-IVPE-CLYKLRNLRRLNLSGNKITELN-M-TEGEWENLETLNLSRNQLT-----VLPDAVC 288 (1255)
T ss_pred hhhhhhhhhccccccCCC-cchH-HHhhhhhhheeccCcCceeeee-c-cHHHHhhhhhhccccchhc-----cchHHHh
Confidence 444445555555555543 3443 4455555555555555544321 1 2223334555555555554 5555555
Q ss_pred CCCCCCEEECCCCCCCC-ccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccch
Q 021196 231 SLPSLKTLYLSSTNFKG-TVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVS 308 (316)
Q Consensus 231 ~l~~L~~L~l~~n~l~g-~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L 308 (316)
+++.|+.|.+.+|+++- -||. .++++.+|+++..++|.+. -+|+.++.|.+|+.|.|+.|++. .+|. +--++.|
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf~aanN~LE--lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l 364 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVFHAANNKLE--LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDL 364 (1255)
T ss_pred hhHHHHHHHhccCcccccCCcc-chhhhhhhHHHHhhccccc--cCchhhhhhHHHHHhccccccee-echhhhhhcCCc
Confidence 55555555555555432 2444 5555666666666666654 45666666666666666666554 3444 4445555
Q ss_pred hhhh
Q 021196 309 EAFM 312 (316)
Q Consensus 309 ~~l~ 312 (316)
+.|+
T Consensus 365 ~vLD 368 (1255)
T KOG0444|consen 365 KVLD 368 (1255)
T ss_pred ceee
Confidence 5444
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.80 E-value=5.2e-22 Score=153.10 Aligned_cols=185 Identities=25% Similarity=0.379 Sum_probs=142.5
Q ss_pred cccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCccccc
Q 021196 98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD 177 (316)
Q Consensus 98 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~ 177 (316)
.+..+++++.|.||+|.++...|. +..+.+|+.|++.+|++. .+|.+++.++.|+.|+++-|++. .+|. .|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppn-----ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lpr-gfg 99 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPN-----IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPR-GFG 99 (264)
T ss_pred cccchhhhhhhhcccCceeecCCc-----HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcc-ccC
Confidence 455677788888888888766554 788888888888888887 78888888888888888888876 5665 888
Q ss_pred CCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCC
Q 021196 178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNF 257 (316)
Q Consensus 178 ~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l 257 (316)
.++.|+.||+.+|++.....+..|..++.|+.|+++.|.|. .+|..++++++|+.|.+..|.+- ++|. +++.+
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-----~lp~dvg~lt~lqil~lrdndll-~lpk-eig~l 172 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-----ILPPDVGKLTNLQILSLRDNDLL-SLPK-EIGDL 172 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-----cCChhhhhhcceeEEeeccCchh-hCcH-HHHHH
Confidence 88888888888888876544447777788888888888886 78888888888888888888877 7876 88888
Q ss_pred CCCCEEECCCCCCCcchhhhhhcCCC---CCcEEEccCccccccc
Q 021196 258 TNLEELILDDSDLHISQLLQSIASFT---SLKYLSMGFCTLTGAL 299 (316)
Q Consensus 258 ~~L~~L~L~~n~l~g~~ip~~l~~~~---~L~~L~l~~N~l~g~i 299 (316)
++|++|++.+|+++ .+|..++++. +=+.+.+.+|.+...|
T Consensus 173 t~lrelhiqgnrl~--vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 173 TRLRELHIQGNRLT--VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred HHHHHHhcccceee--ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 88888888888887 5777776543 2244556666554444
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.79 E-value=6.3e-22 Score=152.66 Aligned_cols=167 Identities=24% Similarity=0.312 Sum_probs=114.9
Q ss_pred cCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCC
Q 021196 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRK 206 (316)
Q Consensus 127 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~ 206 (316)
+.++.+++.|.+++|+++ .+|+.++.+.+|+.|++++|++. .+|. .++.+++|+.|+++.|++.. .|. .|+.++.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~-~issl~klr~lnvgmnrl~~-lpr-gfgs~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPT-SISSLPKLRILNVGMNRLNI-LPR-GFGSFPA 103 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcCh-hhhhchhhhheecchhhhhc-Ccc-ccCCCch
Confidence 445566667777777776 56666777777777777777766 5665 67777777777777777654 444 6777777
Q ss_pred CCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCc
Q 021196 207 LNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLK 286 (316)
Q Consensus 207 L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~ 286 (316)
|+.||+.+|++... .+|..|..+..|+.|++++|.+. .+|+ .++++++|+.|.+.+|.+- ++|..++.++.|+
T Consensus 104 levldltynnl~e~---~lpgnff~m~tlralyl~dndfe-~lp~-dvg~lt~lqil~lrdndll--~lpkeig~lt~lr 176 (264)
T KOG0617|consen 104 LEVLDLTYNNLNEN---SLPGNFFYMTTLRALYLGDNDFE-ILPP-DVGKLTNLQILSLRDNDLL--SLPKEIGDLTRLR 176 (264)
T ss_pred hhhhhccccccccc---cCCcchhHHHHHHHHHhcCCCcc-cCCh-hhhhhcceeEEeeccCchh--hCcHHHHHHHHHH
Confidence 77777777777634 66666666677777777777776 5665 6777777777777777765 5777777777777
Q ss_pred EEEccCcccccccCCCccc
Q 021196 287 YLSMGFCTLTGALHGQGKL 305 (316)
Q Consensus 287 ~L~l~~N~l~g~ip~~~~l 305 (316)
.|++++|+++--.|+++++
T Consensus 177 elhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 177 ELHIQGNRLTVLPPELANL 195 (264)
T ss_pred HHhcccceeeecChhhhhh
Confidence 7777777776544445443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=1e-21 Score=169.57 Aligned_cols=213 Identities=21% Similarity=0.297 Sum_probs=147.0
Q ss_pred cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (316)
Q Consensus 75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 154 (316)
..+.+++.++.+... ++.++.+..++.++.++|++....+. ++.+..|.+++.++|.+. .+|++++.+
T Consensus 69 ~l~vl~~~~n~l~~l------p~aig~l~~l~~l~vs~n~ls~lp~~-----i~s~~~l~~l~~s~n~~~-el~~~i~~~ 136 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQL------PAAIGELEALKSLNVSHNKLSELPEQ-----IGSLISLVKLDCSSNELK-ELPDSIGRL 136 (565)
T ss_pred ceeEEEeccchhhhC------CHHHHHHHHHHHhhcccchHhhccHH-----Hhhhhhhhhhhcccccee-ecCchHHHH
Confidence 366777777765322 33456666667777777766443222 555666666666666555 445555555
Q ss_pred CCCCEEEeeCcccccccCcccccC-----------------------CCCCCEEEcCCCcCCCccccccccCCCCCCEEE
Q 021196 155 SSLRNLSLIGNRLIGSIDIKGLDS-----------------------LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLY 211 (316)
Q Consensus 155 ~~L~~L~L~~n~l~g~ip~~~l~~-----------------------l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~ 211 (316)
..|+.++..+|+++ .+|+ .+.+ ++.|+++|...|-+.. +|+ .++.+.+|..|+
T Consensus 137 ~~l~dl~~~~N~i~-slp~-~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~t-lP~-~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 137 LDLEDLDATNNQIS-SLPE-DMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLET-LPP-ELGGLESLELLY 212 (565)
T ss_pred hhhhhhhccccccc-cCch-HHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhc-CCh-hhcchhhhHHHH
Confidence 55555555555544 3333 3333 5556666665555543 566 677777777777
Q ss_pred cCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEcc
Q 021196 212 LGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMG 291 (316)
Q Consensus 212 l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~ 291 (316)
+..|++. .+| +|..++.|.+++++.|++. .+|++...++.++.+||+++|+++ ++|+.+..+.+|.+||+|
T Consensus 213 L~~Nki~-----~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk--e~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 213 LRRNKIR-----FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK--EVPDEICLLRSLERLDLS 283 (565)
T ss_pred hhhcccc-----cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc--cCchHHHHhhhhhhhccc
Confidence 7777775 555 6777777777777777776 778766779999999999999998 799999999999999999
Q ss_pred CcccccccCCCccccchhhhhh
Q 021196 292 FCTLTGALHGQGKLRVSEAFMI 313 (316)
Q Consensus 292 ~N~l~g~ip~~~~l~~L~~l~i 313 (316)
+|.+++-.+++|++ .|+.|.+
T Consensus 284 NN~is~Lp~sLgnl-hL~~L~l 304 (565)
T KOG0472|consen 284 NNDISSLPYSLGNL-HLKFLAL 304 (565)
T ss_pred CCccccCCcccccc-eeeehhh
Confidence 99999988889999 7877754
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=2.8e-18 Score=152.28 Aligned_cols=221 Identities=21% Similarity=0.173 Sum_probs=149.2
Q ss_pred cEEEEEcCCCCccc-ccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCc----cccc
Q 021196 75 RVIKLDLRDTRNWE-SAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN----SIFS 149 (316)
Q Consensus 75 ~v~~l~L~~~~~~~-~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~----~~p~ 149 (316)
.++.++++++.+.. ...+......+..+++|++|++++|.+.+..+......... ++|++|++++|.+++ .+..
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHH
Confidence 36667776665431 01111112345668899999999998876444321111222 559999999998873 2334
Q ss_pred ccCCC-CCCCEEEeeCcccccc----cCcccccCCCCCCEEEcCCCcCCCc----cccccccCCCCCCEEEcCCcccccc
Q 021196 150 SLGGL-SSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMSDNAINNL----VIPKDYRGLRKLNTLYLGGTEIAMI 220 (316)
Q Consensus 150 ~~~~l-~~L~~L~L~~n~l~g~----ip~~~l~~l~~L~~L~L~~n~~~~~----~p~~~~~~l~~L~~L~l~~n~l~~~ 220 (316)
.+..+ ++|++|++++|.+++. ++. .+..+.+|++|++++|.+++. ++. .+..+++|++|++++|.++..
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~i~~~ 208 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLANNGIGDAGIRALAE-GLKANCNLEVLDLNNNGLTDE 208 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcCCCCchHHHHHHHH-HHHhCCCCCEEeccCCccChH
Confidence 55566 8899999999988743 222 456677899999999988853 222 455667899999999988633
Q ss_pred ccchhhhhcCCCCCCCEEECCCCCCCCccchhhhc----CCCCCCEEECCCCCCCc---chhhhhhcCCCCCcEEEccCc
Q 021196 221 DGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELH----NFTNLEELILDDSDLHI---SQLLQSIASFTSLKYLSMGFC 293 (316)
Q Consensus 221 ~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~----~l~~L~~L~L~~n~l~g---~~ip~~l~~~~~L~~L~l~~N 293 (316)
....++..+..+++|++|++++|.+++........ ..+.|+.|++++|.++. ..+...+..+++|+++++++|
T Consensus 209 ~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 209 GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 22345667778889999999999888633321112 24789999999999862 145566777788999999999
Q ss_pred ccccc
Q 021196 294 TLTGA 298 (316)
Q Consensus 294 ~l~g~ 298 (316)
+++..
T Consensus 289 ~l~~~ 293 (319)
T cd00116 289 KFGEE 293 (319)
T ss_pred CCcHH
Confidence 98855
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.71 E-value=1.7e-16 Score=162.20 Aligned_cols=100 Identities=22% Similarity=0.270 Sum_probs=62.1
Q ss_pred CCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhh--------------------cCCCCCCEEEC
Q 021196 206 KLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL--------------------HNFTNLEELIL 265 (316)
Q Consensus 206 ~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~--------------------~~l~~L~~L~L 265 (316)
+|+.|++++|... + .+|..++++++|+.|++++|...+.+|. .+ ...++|+.|++
T Consensus 779 sL~~L~Ls~n~~l-~---~lP~si~~L~~L~~L~Ls~C~~L~~LP~-~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~L 853 (1153)
T PLN03210 779 SLTRLFLSDIPSL-V---ELPSSIQNLHKLEHLEIENCINLETLPT-GINLESLESLDLSGCSRLRTFPDISTNISDLNL 853 (1153)
T ss_pred cchheeCCCCCCc-c---ccChhhhCCCCCCEEECCCCCCcCeeCC-CCCccccCEEECCCCCccccccccccccCEeEC
Confidence 4555556555443 3 5666666666666666666543334443 11 01245677777
Q ss_pred CCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhh
Q 021196 266 DDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFM 312 (316)
Q Consensus 266 ~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~ 312 (316)
++|.++ .+|.++..+++|+.|++++|+--..+|. +..++.|+.++
T Consensus 854 s~n~i~--~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 854 SRTGIE--EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred CCCCCc--cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 777776 6888899999999999998643334554 66666665544
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=3.6e-18 Score=151.65 Aligned_cols=236 Identities=24% Similarity=0.204 Sum_probs=166.1
Q ss_pred cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCC--ccccccccccCCCCCCcEEECCCCCCCcccccccC
Q 021196 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAG--CVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (316)
Q Consensus 75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 152 (316)
.++.++++++.+...+...+ ...+...+.+++++++++.+.+ .........+..+++|++|++++|.+.+..+..+.
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i-~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKAL-ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hccEEeecCCCCcHHHHHHH-HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 38889999887743322111 2335667889999999998763 11111123477899999999999999876666665
Q ss_pred CCCC---CCEEEeeCcccccc----cCcccccCC-CCCCEEEcCCCcCCCcccc---ccccCCCCCCEEEcCCccccccc
Q 021196 153 GLSS---LRNLSLIGNRLIGS----IDIKGLDSL-GNLEELDMSDNAINNLVIP---KDYRGLRKLNTLYLGGTEIAMID 221 (316)
Q Consensus 153 ~l~~---L~~L~L~~n~l~g~----ip~~~l~~l-~~L~~L~L~~n~~~~~~p~---~~~~~l~~L~~L~l~~n~l~~~~ 221 (316)
.+.+ |++|++++|.+++. +.. .+..+ ++|+.|++++|.+++.... ..+..+++|++|++++|.++...
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 5554 99999999998732 222 45666 8999999999999853221 25667789999999999997332
Q ss_pred cchhhhhcCCCCCCCEEECCCCCCCCccch---hhhcCCCCCCEEECCCCCCCcchhhhhhc-C----CCCCcEEEccCc
Q 021196 222 GSKVLQSIGSLPSLKTLYLSSTNFKGTVVN---QELHNFTNLEELILDDSDLHISQLLQSIA-S----FTSLKYLSMGFC 293 (316)
Q Consensus 222 ~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~---~~~~~l~~L~~L~L~~n~l~g~~ip~~l~-~----~~~L~~L~l~~N 293 (316)
...++..+..+++|+.|++++|.+++.... ..+..+++|++|++++|.+++ ..+..+. . .++|+.|++++|
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~-~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD-AGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch-HHHHHHHHHHhccCCCceEEEccCC
Confidence 224556677778999999999998754322 256678999999999999986 3333332 2 379999999999
Q ss_pred ccc--c--ccCC-Cccccchhhhhh
Q 021196 294 TLT--G--ALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 294 ~l~--g--~ip~-~~~l~~L~~l~i 313 (316)
.++ | .+.. +..++.|+++++
T Consensus 261 ~i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 261 DITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred CCCcHHHHHHHHHHhcCCCccEEEC
Confidence 997 2 2222 444566666554
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=1e-15 Score=148.04 Aligned_cols=237 Identities=21% Similarity=0.272 Sum_probs=130.2
Q ss_pred cCCCcHHHHHHHHHHhhhCCCCC---CCCCCCCCCCCCCCCCcccc----------------eEEcCCCCcEEEEEcCCC
Q 021196 24 SEGCLEQERYALLQLRHFFNDDQ---CLQNCWVDDENYSDCCQWER----------------VECNDTTGRVIKLDLRDT 84 (316)
Q Consensus 24 ~~~~~~~~~~aL~~~~~~~~~~~---~~~~~W~~~~~~~~~c~w~g----------------v~c~~~~~~v~~l~L~~~ 84 (316)
.++..++|.+.+++..+.+..|. ....+| ..+.++|.-.. |.|. .+.||.+..-+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~---~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~ 131 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPAYADNIQYSR---GGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTES 131 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhcccccc---CCCCcccccCCcchhhheeeecCCceEEecC--CCcccccccccc
Confidence 45667899999999999999987 233458 55778885433 5664 345555554433
Q ss_pred Cccccc--------------ccc------------------------------cccccccC-----CCCCcEEEccCCcc
Q 021196 85 RNWESA--------------EWY------------------------------MNASLFTP-----FQQLESLYLIGNNI 115 (316)
Q Consensus 85 ~~~~~~--------------~~~------------------------------~~~~~~~~-----l~~L~~L~L~~n~~ 115 (316)
...... .|. +....+.. .++|+.|++++|.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~L 211 (754)
T PRK15370 132 EQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTTIPACIPEQITTLILDNNEL 211 (754)
T ss_pred cccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCcCCcccccCCcEEEecCCCC
Confidence 111000 000 00000111 13567777777777
Q ss_pred CCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCc
Q 021196 116 AGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL 195 (316)
Q Consensus 116 ~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~ 195 (316)
+. +|.. + ..+|++|++++|.++ .+|..+. .+|+.|++++|.+. .+|. .+. .+|+.|++++|+++.
T Consensus 212 ts-LP~~----l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~-~l~--s~L~~L~Ls~N~L~~- 276 (754)
T PRK15370 212 KS-LPEN----L--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPE-RLP--SALQSLDLFHNKISC- 276 (754)
T ss_pred Cc-CChh----h--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCCh-hHh--CCCCEEECcCCccCc-
Confidence 63 3332 2 246777777777776 4554432 35666666666655 4554 332 356666666666654
Q ss_pred cccccccCCCCCCEEEcCCccccccccchhhhhcC-------------------CCCCCCEEECCCCCCCCccchhhhcC
Q 021196 196 VIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIG-------------------SLPSLKTLYLSSTNFKGTVVNQELHN 256 (316)
Q Consensus 196 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~-------------------~l~~L~~L~l~~n~l~g~~p~~~~~~ 256 (316)
+|. .+. ++|+.|++++|+++ .+|..+. -.++|+.|++++|.++ .+|. .+.
T Consensus 277 LP~-~l~--~sL~~L~Ls~N~Lt-----~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~-~l~- 345 (754)
T PRK15370 277 LPE-NLP--EELRYLSVYDNSIR-----TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPA-SLP- 345 (754)
T ss_pred ccc-ccC--CCCcEEECCCCccc-----cCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCCh-hhc-
Confidence 444 332 35666666666655 2222110 1135666666666665 3554 332
Q ss_pred CCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196 257 FTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296 (316)
Q Consensus 257 l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~ 296 (316)
++|+.|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 346 -~sL~~L~Ls~N~L~--~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 346 -PELQVLDVSKNQIT--VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred -CcccEEECCCCCCC--cCChhhc--CCcCEEECCCCcCC
Confidence 56777777777765 3555442 46777777777766
No 14
>PLN03150 hypothetical protein; Provisional
Probab=99.70 E-value=1.7e-16 Score=152.26 Aligned_cols=150 Identities=31% Similarity=0.442 Sum_probs=87.4
Q ss_pred CCCcHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCCC-----cccceEEcCCC----CcEEEEEcCCCCcccccccccc
Q 021196 25 EGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCC-----QWERVECNDTT----GRVIKLDLRDTRNWESAEWYMN 95 (316)
Q Consensus 25 ~~~~~~~~~aL~~~~~~~~~~~~~~~~W~~~~~~~~~c-----~w~gv~c~~~~----~~v~~l~L~~~~~~~~~~~~~~ 95 (316)
..+.++|.+||+++|+.+..+. ..+|. .++| .|.||.|+... .+|+.|+|+++.+. |..
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~--~~~W~-----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~--g~i--- 434 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL--RFGWN-----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLR--GFI--- 434 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc--cCCCC-----CCCCCCcccccccceeeccCCCCceEEEEEECCCCCcc--ccC---
Confidence 4567789999999999997654 24794 2334 79999995311 13666666665542 221
Q ss_pred cccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCccc
Q 021196 96 ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG 175 (316)
Q Consensus 96 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~ 175 (316)
+..+..+++|+.|+|++|.+.|.+|.. ++.+++|+.|+|++|.++|.+|..++++++|++|+|++|.++|.+|. .
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~ 509 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA-A 509 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCcCChH----HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh-H
Confidence 223455555556666555555555532 55555555555555555555555555555555555555555555554 3
Q ss_pred ccC-CCCCCEEEcCCCc
Q 021196 176 LDS-LGNLEELDMSDNA 191 (316)
Q Consensus 176 l~~-l~~L~~L~L~~n~ 191 (316)
+.. ..++..+++.+|.
T Consensus 510 l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 510 LGGRLLHRASFNFTDNA 526 (623)
T ss_pred HhhccccCceEEecCCc
Confidence 333 2234455555554
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=4.2e-16 Score=159.35 Aligned_cols=184 Identities=21% Similarity=0.206 Sum_probs=100.6
Q ss_pred ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (316)
Q Consensus 99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~ 178 (316)
+..+++|+.|+|+++...+.+|. ++.+++|++|++++|.....+|..+.++++|++|++++|...+.+|. .+ +
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i-~ 702 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GI-N 702 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cC-C
Confidence 34566666666666554455553 55666777777766655556666666677777777766654455664 32 5
Q ss_pred CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhc-----------------------------
Q 021196 179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI----------------------------- 229 (316)
Q Consensus 179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~----------------------------- 229 (316)
+++|+.|++++|...+.+|. ...+|+.|++++|.+. .+|..+
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-----~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-----EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred CCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-----cccccccccccccccccccchhhccccccccchhh
Confidence 66666666666654443332 1345666666666654 444322
Q ss_pred -CCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC
Q 021196 230 -GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 301 (316)
Q Consensus 230 -~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~ 301 (316)
...++|+.|++++|...+.+|. .++++++|+.|++++|..-+ .+|..+ .+++|+.|++++|.....+|.
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~-~LP~~~-~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLE-TLPTGI-NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred hhccccchheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCcC-eeCCCC-CccccCEEECCCCCccccccc
Confidence 0123455555555544445554 45555555555555543322 444433 455555555555543334443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=2.2e-16 Score=151.98 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=60.0
Q ss_pred CCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCC
Q 021196 206 KLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSL 285 (316)
Q Consensus 206 ~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L 285 (316)
+|+.|++++|.++ .+|.. .++|+.|++++|+++ .+|. . ..+|+.|++++|+++ .+|..+.++++|
T Consensus 383 ~L~~LdLs~N~Lt-----~LP~l---~s~L~~LdLS~N~Ls-sIP~-l---~~~L~~L~Ls~NqLt--~LP~sl~~L~~L 447 (788)
T PRK15387 383 GLKELIVSGNRLT-----SLPVL---PSELKELMVSGNRLT-SLPM-L---PSGLLSLSVYRNQLT--RLPESLIHLSSE 447 (788)
T ss_pred ccceEEecCCccc-----CCCCc---ccCCCEEEccCCcCC-CCCc-c---hhhhhhhhhccCccc--ccChHHhhccCC
Confidence 4666666666665 44432 246777777777776 4664 2 246778888888887 689999999999
Q ss_pred cEEEccCcccccccCC
Q 021196 286 KYLSMGFCTLTGALHG 301 (316)
Q Consensus 286 ~~L~l~~N~l~g~ip~ 301 (316)
+.|+|++|+|+|.+|.
T Consensus 448 ~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 448 TTVNLEGNPLSERTLQ 463 (788)
T ss_pred CeEECCCCCCCchHHH
Confidence 9999999999988765
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.66 E-value=9.4e-18 Score=144.91 Aligned_cols=228 Identities=24% Similarity=0.300 Sum_probs=169.9
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCC-CCCCcccccccC
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSSLG 152 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~ 152 (316)
...++|+|..|.+.. +++..|+.+++|+.|||++|.|+..-|. +|..++.|.+|-+.+ |+|+...-..|+
T Consensus 67 ~~tveirLdqN~I~~-----iP~~aF~~l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 67 PETVEIRLDQNQISS-----IPPGAFKTLHRLRRLDLSKNNISFIAPD----AFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred CcceEEEeccCCccc-----CChhhccchhhhceecccccchhhcChH----hhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 468899999998754 3467899999999999999999876665 488888888776655 888855555678
Q ss_pred CCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccc-------------
Q 021196 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAM------------- 219 (316)
Q Consensus 153 ~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~------------- 219 (316)
++.+|+-|.+.-|++. .++...+..++++..|.+.+|.+.. ++...+..+..++++.+..|.+-.
T Consensus 138 gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~-i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQS-ICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred hHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhh-hccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence 8888888888888876 4555678888888888888887765 333356666666666655553110
Q ss_pred -----cc---------------------------------------cchhh-hhcCCCCCCCEEECCCCCCCCccchhhh
Q 021196 220 -----ID---------------------------------------GSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQEL 254 (316)
Q Consensus 220 -----~~---------------------------------------~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~ 254 (316)
+. ...-| ..|..+++|++|++++|+++ .|...+|
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aF 294 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAF 294 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhh
Confidence 00 00112 24678899999999999999 4555599
Q ss_pred cCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhhh
Q 021196 255 HNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMIL 314 (316)
Q Consensus 255 ~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i~ 314 (316)
.....+++|.|..|++.- .--..|.++..|+.|+|++|+++-.-|- +..+..|.+|.++
T Consensus 295 e~~a~l~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 295 EGAAELQELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred cchhhhhhhhcCcchHHH-HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 999999999999999863 2334678899999999999999977776 7777777776653
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=1.3e-19 Score=156.76 Aligned_cols=211 Identities=22% Similarity=0.271 Sum_probs=169.6
Q ss_pred EEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCC
Q 021196 76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155 (316)
Q Consensus 76 v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 155 (316)
...+.+++|.+... ...+.++..+.+|++.+|.+....|. ++.+..++.++.++|+++ .+|+.++.+.
T Consensus 47 l~~lils~N~l~~l------~~dl~nL~~l~vl~~~~n~l~~lp~a-----ig~l~~l~~l~vs~n~ls-~lp~~i~s~~ 114 (565)
T KOG0472|consen 47 LQKLILSHNDLEVL------REDLKNLACLTVLNVHDNKLSQLPAA-----IGELEALKSLNVSHNKLS-ELPEQIGSLI 114 (565)
T ss_pred hhhhhhccCchhhc------cHhhhcccceeEEEeccchhhhCCHH-----HHHHHHHHHhhcccchHh-hccHHHhhhh
Confidence 34577787766422 23467888999999999999876554 889999999999999998 8999999999
Q ss_pred CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccC-----------------------CCCCCEEEc
Q 021196 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRG-----------------------LRKLNTLYL 212 (316)
Q Consensus 156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~-----------------------l~~L~~L~l 212 (316)
+|..++.++|.+. ++|+ .++.+..++.++..+|+++. .|+ .+.. ++.|++++.
T Consensus 115 ~l~~l~~s~n~~~-el~~-~i~~~~~l~dl~~~~N~i~s-lp~-~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 115 SLVKLDCSSNELK-ELPD-SIGRLLDLEDLDATNNQISS-LPE-DMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDC 190 (565)
T ss_pred hhhhhhcccccee-ecCc-hHHHHhhhhhhhcccccccc-Cch-HHHHHHHHHHhhccccchhhCCHHHHHHHHHHhccc
Confidence 9999999999997 6776 88899999999999998876 344 3333 445666666
Q ss_pred CCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhc-CCCCCcEEEcc
Q 021196 213 GGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIA-SFTSLKYLSMG 291 (316)
Q Consensus 213 ~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~-~~~~L~~L~l~ 291 (316)
..|.++ .+|+.++.+.+|+.|++..|++. .+| +|+.|..|.+++++.|.+. .+|.... +++++.+||+.
T Consensus 191 ~~N~L~-----tlP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~--~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 191 NSNLLE-----TLPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIE--MLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred chhhhh-----cCChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHH--hhHHHHhcccccceeeecc
Confidence 666665 78888888888888888888887 666 6888888888999888887 5777665 89999999999
Q ss_pred CcccccccCC-Cccccchhhhhh
Q 021196 292 FCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 292 ~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
.|++. +.|. +-.+++|++|++
T Consensus 261 dNklk-e~Pde~clLrsL~rLDl 282 (565)
T KOG0472|consen 261 DNKLK-EVPDEICLLRSLERLDL 282 (565)
T ss_pred ccccc-cCchHHHHhhhhhhhcc
Confidence 99998 4555 778888888875
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=2.7e-18 Score=161.89 Aligned_cols=104 Identities=22% Similarity=0.351 Sum_probs=52.7
Q ss_pred CCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh-hcCCCCCCCEEECCCCCCCCccchhhhcCCCCC
Q 021196 182 LEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ-SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNL 260 (316)
Q Consensus 182 L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L 260 (316)
|+.|.+.+|+++....+ .+.++++|+.|+|++|.+. .+|+ .+.+++.|++|+||+|.++ .+|. .+..+..|
T Consensus 361 Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~-----~fpas~~~kle~LeeL~LSGNkL~-~Lp~-tva~~~~L 432 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLN-----SFPASKLRKLEELEELNLSGNKLT-TLPD-TVANLGRL 432 (1081)
T ss_pred HHHHHHhcCcccccchh-hhccccceeeeeecccccc-----cCCHHHHhchHHhHHHhcccchhh-hhhH-HHHhhhhh
Confidence 44444445555444444 4455555555555555554 4443 3445555555555555555 4553 44445555
Q ss_pred CEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196 261 EELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296 (316)
Q Consensus 261 ~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~ 296 (316)
++|...+|.+. .+| .+.+++.|+.+|++.|+++
T Consensus 433 ~tL~ahsN~l~--~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 433 HTLRAHSNQLL--SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred HHHhhcCCcee--ech-hhhhcCcceEEecccchhh
Confidence 55555555544 344 4455555555555555554
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.65 E-value=6.3e-16 Score=149.44 Aligned_cols=182 Identities=20% Similarity=0.304 Sum_probs=106.3
Q ss_pred cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (316)
Q Consensus 75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 154 (316)
.++.|+|++|.+..... . + .++|+.|++++|.++. +|.. + ...|+.|++++|.+. .+|..+.
T Consensus 200 ~L~~L~Ls~N~LtsLP~-----~-l--~~nL~~L~Ls~N~Lts-LP~~----l--~~~L~~L~Ls~N~L~-~LP~~l~-- 261 (754)
T PRK15370 200 QITTLILDNNELKSLPE-----N-L--QGNIKTLYANSNQLTS-IPAT----L--PDTIQEMELSINRIT-ELPERLP-- 261 (754)
T ss_pred CCcEEEecCCCCCcCCh-----h-h--ccCCCEEECCCCcccc-CChh----h--hccccEEECcCCccC-cCChhHh--
Confidence 46667777776643221 1 1 2467777887777763 3421 1 124555555555554 3444332
Q ss_pred CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCc--------------------cccccccCCCCCCEEEcCC
Q 021196 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL--------------------VIPKDYRGLRKLNTLYLGG 214 (316)
Q Consensus 155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~--------------------~p~~~~~~l~~L~~L~l~~ 214 (316)
.+|++|++++|++. .+|. .+. ++|+.|++++|++++. +|. .+ .++|+.|++++
T Consensus 262 s~L~~L~Ls~N~L~-~LP~-~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~ 334 (754)
T PRK15370 262 SALQSLDLFHNKIS-CLPE-NLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPE-TL--PPGLKTLEAGE 334 (754)
T ss_pred CCCCEEECcCCccC-cccc-ccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCc-cc--cccceeccccC
Confidence 34555555555554 3443 221 2455555555544431 222 11 24677788888
Q ss_pred ccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcc
Q 021196 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCT 294 (316)
Q Consensus 215 n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~ 294 (316)
|.++ .+|..+. ++|+.|++++|+++ .+|. .+. ++|+.|++++|+++ .+|..+. .+|+.|++++|+
T Consensus 335 N~Lt-----~LP~~l~--~sL~~L~Ls~N~L~-~LP~-~lp--~~L~~LdLs~N~Lt--~LP~~l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 335 NALT-----SLPASLP--PELQVLDVSKNQIT-VLPE-TLP--PTITTLDVSRNALT--NLPENLP--AALQIMQASRNN 399 (754)
T ss_pred Cccc-----cCChhhc--CcccEEECCCCCCC-cCCh-hhc--CCcCEEECCCCcCC--CCCHhHH--HHHHHHhhccCC
Confidence 8776 5665443 57888888888887 5775 442 57888888888887 4666554 257778888887
Q ss_pred cc
Q 021196 295 LT 296 (316)
Q Consensus 295 l~ 296 (316)
++
T Consensus 400 L~ 401 (754)
T PRK15370 400 LV 401 (754)
T ss_pred cc
Confidence 76
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=5.7e-15 Score=142.35 Aligned_cols=195 Identities=18% Similarity=0.122 Sum_probs=99.7
Q ss_pred cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccC--
Q 021196 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG-- 152 (316)
Q Consensus 75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-- 152 (316)
+++.|++.+|.+...+. ..++|++|++++|.++. +|.. .++|++|++++|.++ .+|..+.
T Consensus 223 ~L~~L~L~~N~Lt~LP~---------lp~~Lk~LdLs~N~Lts-LP~l-------p~sL~~L~Ls~N~L~-~Lp~lp~~L 284 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLTS-LPVL-------PPGLLELSIFSNPLT-HLPALPSGL 284 (788)
T ss_pred CCCEEEccCCcCCCCCC---------CCCCCcEEEecCCccCc-ccCc-------ccccceeeccCCchh-hhhhchhhc
Confidence 56778888777643221 24688999999998874 3421 234555555555444 2222110
Q ss_pred ---------------CCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccc
Q 021196 153 ---------------GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEI 217 (316)
Q Consensus 153 ---------------~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l 217 (316)
..++|++|++++|++.+ +|. .. .+|+.|++++|++++ +|. . ..+|+.|++++|++
T Consensus 285 ~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~-lp---~~L~~L~Ls~N~L~~-LP~-l---p~~Lq~LdLS~N~L 354 (788)
T PRK15387 285 CKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPA-LP---SELCKLWAYNNQLTS-LPT-L---PSGLQELSVSDNQL 354 (788)
T ss_pred CEEECcCCccccccccccccceeECCCCcccc-CCC-Cc---ccccccccccCcccc-ccc-c---ccccceEecCCCcc
Confidence 12456666666665553 332 11 112222222222222 111 0 12455555555555
Q ss_pred cccccchhhhhcC-----------------CCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhc
Q 021196 218 AMIDGSKVLQSIG-----------------SLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIA 280 (316)
Q Consensus 218 ~~~~~~~~p~~~~-----------------~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~ 280 (316)
+ .+|.... ..++|+.|++++|+++ .+|. . .++|+.|++++|.++ .+|...
T Consensus 355 s-----~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~-l---~s~L~~LdLS~N~Ls--sIP~l~- 421 (788)
T PRK15387 355 A-----SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPV-L---PSELKELMVSGNRLT--SLPMLP- 421 (788)
T ss_pred C-----CCCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCC-c---ccCCCEEEccCCcCC--CCCcch-
Confidence 4 2222110 1134666666666665 3543 1 245667777777766 355432
Q ss_pred CCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196 281 SFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 281 ~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
.+|+.|++++|+++ .+|. +++++.|+.|++
T Consensus 422 --~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 422 --SGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred --hhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 35667777777776 5666 677777766654
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.57 E-value=4e-17 Score=154.14 Aligned_cols=195 Identities=22% Similarity=0.250 Sum_probs=147.9
Q ss_pred CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCC
Q 021196 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL 182 (316)
Q Consensus 103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L 182 (316)
.+|+++|+++|.+++.. . .++.+.+|+.++..+|.++ .+|..+...++|++|....|.+. .+|+ ....+++|
T Consensus 241 ~nl~~~dis~n~l~~lp-~----wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~-~le~~~sL 312 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLP-E----WIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPP-FLEGLKSL 312 (1081)
T ss_pred ccceeeecchhhhhcch-H----HHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCC-ccccccee
Confidence 46677777777765533 2 3667777777777777774 66666666777777777777765 5665 66678888
Q ss_pred CEEEcCCCcCCCcccccccc-------------------------CCCCCCEEEcCCccccccccchhhhhcCCCCCCCE
Q 021196 183 EELDMSDNAINNLVIPKDYR-------------------------GLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT 237 (316)
Q Consensus 183 ~~L~L~~n~~~~~~p~~~~~-------------------------~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~ 237 (316)
++|+|..|++.. .|...+. .++.|+.|.+.+|.++ . ..-+.+-+++.|++
T Consensus 313 ~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt-d---~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 313 RTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT-D---SCFPVLVNFKHLKV 387 (1081)
T ss_pred eeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc-c---cchhhhccccceee
Confidence 888888887765 2221111 1345777788888887 4 33446778889999
Q ss_pred EECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhhh
Q 021196 238 LYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMIL 314 (316)
Q Consensus 238 L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i~ 314 (316)
|+|++|++. ++|+..+.++..|++|+|++|+++ .+|..+.++..|++|...+|++. .+|++..++.|+.+++.
T Consensus 388 LhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~--~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 388 LHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT--TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLS 460 (1081)
T ss_pred eeecccccc-cCCHHHHhchHHhHHHhcccchhh--hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecc
Confidence 999999997 899988999999999999999998 79999999999999999999987 66788888888888763
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.50 E-value=3.7e-16 Score=140.75 Aligned_cols=190 Identities=22% Similarity=0.235 Sum_probs=131.3
Q ss_pred CCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCC
Q 021196 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGN 181 (316)
Q Consensus 102 l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~ 181 (316)
+..-...|++.|.+.. +|.+ +..+..|+.+.+..|.+. .+|..++++..|++++|+.|+++ .+|. .+..++
T Consensus 74 ltdt~~aDlsrNR~~e-lp~~----~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~-~lC~lp- 144 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSE-LPEE----ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPD-GLCDLP- 144 (722)
T ss_pred ccchhhhhcccccccc-CchH----HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCCh-hhhcCc-
Confidence 4455567777777643 3332 555666777777777776 67777777777888888887776 5665 666665
Q ss_pred CCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCC
Q 021196 182 LEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLE 261 (316)
Q Consensus 182 L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~ 261 (316)
|+.|.+++|+++. +|. .++.+..|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|. ++. .-.|.
T Consensus 145 Lkvli~sNNkl~~-lp~-~ig~~~tl~~ld~s~nei~-----slpsql~~l~slr~l~vrRn~l~-~lp~-El~-~LpLi 214 (722)
T KOG0532|consen 145 LKVLIVSNNKLTS-LPE-EIGLLPTLAHLDVSKNEIQ-----SLPSQLGYLTSLRDLNVRRNHLE-DLPE-ELC-SLPLI 214 (722)
T ss_pred ceeEEEecCcccc-CCc-ccccchhHHHhhhhhhhhh-----hchHHhhhHHHHHHHHHhhhhhh-hCCH-HHh-CCcee
Confidence 7777777777765 455 6667777777788777776 77777777777777777777776 6776 555 34577
Q ss_pred EEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC---Cccccchhhhh
Q 021196 262 ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG---QGKLRVSEAFM 312 (316)
Q Consensus 262 ~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~---~~~l~~L~~l~ 312 (316)
.||++.|+++ .||..|.+++.|++|-|.+|.+....-. -|+..-.++|+
T Consensus 215 ~lDfScNkis--~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~ 266 (722)
T KOG0532|consen 215 RLDFSCNKIS--YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLS 266 (722)
T ss_pred eeecccCcee--ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeec
Confidence 7788888777 5777777787888888888777643222 45555555554
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.50 E-value=6.4e-16 Score=133.69 Aligned_cols=197 Identities=22% Similarity=0.253 Sum_probs=155.8
Q ss_pred CCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeC-cccccccCcccccCCCCC
Q 021196 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG-NRLIGSIDIKGLDSLGNL 182 (316)
Q Consensus 104 ~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~g~ip~~~l~~l~~L 182 (316)
.-..++|..|+|+...+. +|+.+++|+.|||++|.|+..-|+.|.++.+|..|.+.+ |+++ .+|...|.++.++
T Consensus 68 ~tveirLdqN~I~~iP~~----aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPG----AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL 142 (498)
T ss_pred cceEEEeccCCcccCChh----hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence 457899999999765443 599999999999999999999999999999998888877 7777 7898899999999
Q ss_pred CEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh-hcCCCCCCCEEECCCCCCC---------------
Q 021196 183 EELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ-SIGSLPSLKTLYLSSTNFK--------------- 246 (316)
Q Consensus 183 ~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~--------------- 246 (316)
+.|.+.-|++.-. +...+..++++..|.+..|.+. .++. .+..+.+++.+.+..|.+-
T Consensus 143 qrLllNan~i~Ci-r~~al~dL~~l~lLslyDn~~q-----~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 143 QRLLLNANHINCI-RQDALRDLPSLSLLSLYDNKIQ-----SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred HHHhcChhhhcch-hHHHHHHhhhcchhcccchhhh-----hhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 9999999999885 4459999999999999999987 6666 6778888888888887721
Q ss_pred ----------------------------------------------CccchhhhcCCCCCCEEECCCCCCCcchhhhhhc
Q 021196 247 ----------------------------------------------GTVVNQELHNFTNLEELILDDSDLHISQLLQSIA 280 (316)
Q Consensus 247 ----------------------------------------------g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~ 280 (316)
+.-|...|..+++|+.|+|++|++++ .-+.+|.
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-i~~~aFe 295 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-IEDGAFE 295 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-hhhhhhc
Confidence 12233456677888888888888886 5567788
Q ss_pred CCCCCcEEEccCcccccccCC-Cccccchhhhh
Q 021196 281 SFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFM 312 (316)
Q Consensus 281 ~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~ 312 (316)
...+++.|.|..|++.-.--. +..+..|+.|+
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~ 328 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLS 328 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccccceeee
Confidence 888888888888887522222 55555555554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.42 E-value=3.8e-15 Score=134.32 Aligned_cols=192 Identities=27% Similarity=0.342 Sum_probs=158.2
Q ss_pred EEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCC
Q 021196 76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155 (316)
Q Consensus 76 v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 155 (316)
.+..||+.|++.+. +..+..|..|+.+.|..|.+....+ .++++..|+++||+.|+++ .+|..++.|+
T Consensus 77 t~~aDlsrNR~~el------p~~~~~f~~Le~liLy~n~~r~ip~-----~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp 144 (722)
T KOG0532|consen 77 TVFADLSRNRFSEL------PEEACAFVSLESLILYHNCIRTIPE-----AICNLEALTFLDLSSNQLS-HLPDGLCDLP 144 (722)
T ss_pred hhhhhccccccccC------chHHHHHHHHHHHHHHhccceecch-----hhhhhhHHHHhhhccchhh-cCChhhhcCc
Confidence 44566777766332 2334566778899999998865433 3899999999999999998 7888888776
Q ss_pred CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCC
Q 021196 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSL 235 (316)
Q Consensus 156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L 235 (316)
|+.|.+++|+++ .+|+ .++....|..||.+.|.+.. +|+ .++.+.+|+.|.+..|++. .+|+.+..++ |
T Consensus 145 -Lkvli~sNNkl~-~lp~-~ig~~~tl~~ld~s~nei~s-lps-ql~~l~slr~l~vrRn~l~-----~lp~El~~Lp-L 213 (722)
T KOG0532|consen 145 -LKVLIVSNNKLT-SLPE-EIGLLPTLAHLDVSKNEIQS-LPS-QLGYLTSLRDLNVRRNHLE-----DLPEELCSLP-L 213 (722)
T ss_pred -ceeEEEecCccc-cCCc-ccccchhHHHhhhhhhhhhh-chH-HhhhHHHHHHHHHhhhhhh-----hCCHHHhCCc-e
Confidence 999999999987 7887 78888999999999999887 677 8899999999999999998 8999998664 9
Q ss_pred CEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCC---CCCcEEEccCcc
Q 021196 236 KTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASF---TSLKYLSMGFCT 294 (316)
Q Consensus 236 ~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~---~~L~~L~l~~N~ 294 (316)
..||++.|+++ .||. .|.+|+.|++|-|.+|.+. .-|..++.. .=.++|+.+-++
T Consensus 214 i~lDfScNkis-~iPv-~fr~m~~Lq~l~LenNPLq--SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 214 IRLDFSCNKIS-YLPV-DFRKMRHLQVLQLENNPLQ--SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeecccCcee-ecch-hhhhhhhheeeeeccCCCC--CChHHHHhccceeeeeeecchhcc
Confidence 99999999999 9998 9999999999999999998 456666433 334677777774
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.42 E-value=1.4e-13 Score=125.88 Aligned_cols=183 Identities=32% Similarity=0.407 Sum_probs=150.3
Q ss_pred ccCCCCCcEEEccCCccCCccccccccccCCCC-CCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCccccc
Q 021196 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN-NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD 177 (316)
Q Consensus 99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~ 177 (316)
+..++.++.|++.+|.++...+. ...+. +|++|++++|.+. .+|..+..+++|+.|++++|++. .+|. ...
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~-----~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~-~~~ 183 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPL-----IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPK-LLS 183 (394)
T ss_pred hhcccceeEEecCCcccccCccc-----cccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhh-hhh
Confidence 45567899999999998766553 45553 8999999999988 66677889999999999999988 5675 444
Q ss_pred CCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCC
Q 021196 178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNF 257 (316)
Q Consensus 178 ~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l 257 (316)
..++|+.|++++|+++. +|. .......|+++.+++|... .++..+.++.++..+.+.+|++. .++. .++.+
T Consensus 184 ~~~~L~~L~ls~N~i~~-l~~-~~~~~~~L~~l~~~~N~~~-----~~~~~~~~~~~l~~l~l~~n~~~-~~~~-~~~~l 254 (394)
T COG4886 184 NLSNLNNLDLSGNKISD-LPP-EIELLSALEELDLSNNSII-----ELLSSLSNLKNLSGLELSNNKLE-DLPE-SIGNL 254 (394)
T ss_pred hhhhhhheeccCCcccc-Cch-hhhhhhhhhhhhhcCCcce-----ecchhhhhcccccccccCCceee-eccc-hhccc
Confidence 88899999999999987 555 4456667999999999654 67778889999999999999887 4444 77888
Q ss_pred CCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC
Q 021196 258 TNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 301 (316)
Q Consensus 258 ~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~ 301 (316)
+.++.|++++|.++ .++. ++...+++.|++++|.+...+|.
T Consensus 255 ~~l~~L~~s~n~i~--~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 255 SNLETLDLSNNQIS--SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccceecccccccc--cccc-ccccCccCEEeccCccccccchh
Confidence 99999999999998 4665 88999999999999999887776
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.38 E-value=1.4e-12 Score=125.38 Aligned_cols=118 Identities=21% Similarity=0.306 Sum_probs=100.5
Q ss_pred CCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCC
Q 021196 181 NLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNL 260 (316)
Q Consensus 181 ~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L 260 (316)
.++.|+|++|.++|.+|. .+..+++|+.|+|++|.++ | .+|..++.+++|+.|++++|+++|.+|. .++++++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~-~i~~L~~L~~L~Ls~N~l~-g---~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIR-G---NIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSL 492 (623)
T ss_pred EEEEEECCCCCccccCCH-HHhCCCCCCEEECCCCccc-C---cCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCC
Confidence 377889999999998888 8899999999999999998 7 8888899999999999999999999987 88999999
Q ss_pred CEEECCCCCCCcchhhhhhcCC-CCCcEEEccCcccccccCCCccc
Q 021196 261 EELILDDSDLHISQLLQSIASF-TSLKYLSMGFCTLTGALHGQGKL 305 (316)
Q Consensus 261 ~~L~L~~n~l~g~~ip~~l~~~-~~L~~L~l~~N~l~g~ip~~~~l 305 (316)
+.|+|++|+++| .+|..+... .++..+++.+|......|.+..|
T Consensus 493 ~~L~Ls~N~l~g-~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 493 RILNLNGNSLSG-RVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CEEECcCCcccc-cCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 999999999999 899888764 46778999998755455654444
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.35 E-value=5.3e-13 Score=122.11 Aligned_cols=187 Identities=29% Similarity=0.398 Sum_probs=154.1
Q ss_pred EEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCC-CCCEEEeeCcccccccCcccccCCCCCCEE
Q 021196 107 SLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS-SLRNLSLIGNRLIGSIDIKGLDSLGNLEEL 185 (316)
Q Consensus 107 ~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L 185 (316)
.++++.+.+...+.. +..++.++.|++.+|.++ .++....... +|++|++++|++. .+|. .+..+++|+.|
T Consensus 97 ~l~~~~~~~~~~~~~-----~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L 168 (394)
T COG4886 97 SLDLNLNRLRSNISE-----LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPS-PLRNLPNLKNL 168 (394)
T ss_pred eeeccccccccCchh-----hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhh-hhhcccccccc
Confidence 578888877554443 566788999999999998 6777777774 9999999999987 5654 68999999999
Q ss_pred EcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEEC
Q 021196 186 DMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELIL 265 (316)
Q Consensus 186 ~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L 265 (316)
++++|+++. +|. .....+.|+.|++++|++. .+|........|+++.+++|.+. .++. .+.++.++..+.+
T Consensus 169 ~l~~N~l~~-l~~-~~~~~~~L~~L~ls~N~i~-----~l~~~~~~~~~L~~l~~~~N~~~-~~~~-~~~~~~~l~~l~l 239 (394)
T COG4886 169 DLSFNDLSD-LPK-LLSNLSNLNNLDLSGNKIS-----DLPPEIELLSALEELDLSNNSII-ELLS-SLSNLKNLSGLEL 239 (394)
T ss_pred ccCCchhhh-hhh-hhhhhhhhhheeccCCccc-----cCchhhhhhhhhhhhhhcCCcce-ecch-hhhhccccccccc
Confidence 999999987 444 4448899999999999998 88887777777999999999654 4555 7888999999999
Q ss_pred CCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196 266 DDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI 313 (316)
Q Consensus 266 ~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i 313 (316)
.+|++. .++..++.+++++.|++++|.++ .++.++....++.|++
T Consensus 240 ~~n~~~--~~~~~~~~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~ 284 (394)
T COG4886 240 SNNKLE--DLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDL 284 (394)
T ss_pred CCceee--eccchhccccccceecccccccc-ccccccccCccCEEec
Confidence 999987 46888999999999999999998 4444777777777654
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.9e-13 Score=119.91 Aligned_cols=210 Identities=23% Similarity=0.214 Sum_probs=124.7
Q ss_pred EEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccccccc-CCC
Q 021196 76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL-GGL 154 (316)
Q Consensus 76 v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l 154 (316)
..++.|.+......|. ......+++++.|||+.|-+....+.. ....++++|+.|+++.|.+.-...... ..+
T Consensus 123 L~~IsLdn~~V~~~~~----~~~~k~~~~v~~LdLS~NL~~nw~~v~--~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 123 LREISLDNYRVEDAGI----EEYSKILPNVRDLDLSRNLFHNWFPVL--KIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhheeecCccccccch----hhhhhhCCcceeecchhhhHHhHHHHH--HHHHhcccchhcccccccccCCccccchhhh
Confidence 4445555554432221 123456778888888888776554432 234567888888888887653222111 246
Q ss_pred CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh--hhcCCC
Q 021196 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL--QSIGSL 232 (316)
Q Consensus 155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p--~~~~~l 232 (316)
+.|+.|.|+.|.++..--...+..+|+|+.|+|..|..-+.. ......++.|+.|+|++|.+- .++ ...+.+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-~~~~~i~~~L~~LdLs~N~li-----~~~~~~~~~~l 270 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK-ATSTKILQTLQELDLSNNNLI-----DFDQGYKVGTL 270 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee-cchhhhhhHHhhccccCCccc-----ccccccccccc
Confidence 778888888887763211124456777888888887522211 113445667888888888775 333 356677
Q ss_pred CCCCEEECCCCCCCCc-cch----hhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccccc
Q 021196 233 PSLKTLYLSSTNFKGT-VVN----QELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 297 (316)
Q Consensus 233 ~~L~~L~l~~n~l~g~-~p~----~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g 297 (316)
+.|+.|+++.+.++.- +|+ +....+++|++|++..|++....-...+..+++|+.|.+..|.++-
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 7788888877776521 121 0134567788888888887532222345556677777777777653
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.4e-13 Score=119.30 Aligned_cols=205 Identities=21% Similarity=0.219 Sum_probs=143.3
Q ss_pred cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcc--cccccCCCCCCCEEEeeCcccccccCccccc
Q 021196 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS--IFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD 177 (316)
Q Consensus 100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~ 177 (316)
.++.+|+.+.|.+..+.-.... .....+++++.|||+.|-|..- +......+++|+.|+++.|++.-......-.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence 3567888888888776433221 2367789999999999987642 3333457899999999999986433332234
Q ss_pred CCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCC
Q 021196 178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNF 257 (316)
Q Consensus 178 ~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l 257 (316)
.++.|+.|.|+.|.++-.-.......+++|+.|++..|..- + ........+..|+.|||++|++-..-.....+.+
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~---~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-L---IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-c---eecchhhhhhHHhhccccCCcccccccccccccc
Confidence 67789999999999886544435667899999999999421 1 1111223455799999999988633222257889
Q ss_pred CCCCEEECCCCCCCcchhhhh-----hcCCCCCcEEEccCcccccccCC---Cccccchhhhh
Q 021196 258 TNLEELILDDSDLHISQLLQS-----IASFTSLKYLSMGFCTLTGALHG---QGKLRVSEAFM 312 (316)
Q Consensus 258 ~~L~~L~L~~n~l~g~~ip~~-----l~~~~~L~~L~l~~N~l~g~ip~---~~~l~~L~~l~ 312 (316)
+.|+.|.++.+.+..-.+|+. ...+++|++|++..|++. ++++ +..+++|+.|.
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLR 332 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhh
Confidence 999999999999875445544 456899999999999996 4444 44555555554
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.30 E-value=9e-13 Score=112.74 Aligned_cols=119 Identities=20% Similarity=0.230 Sum_probs=53.8
Q ss_pred cCCCCCCEEEcCCCcCCCc---cccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccch--
Q 021196 177 DSLGNLEELDMSDNAINNL---VIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN-- 251 (316)
Q Consensus 177 ~~l~~L~~L~L~~n~~~~~---~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~-- 251 (316)
...+.|+.+.+..|.+... .....+..+++|+.||+..|.|+...+..+...+..++.|++|++++|.+...-..
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 3344455555555443221 11123444555555555555554322223344455555555555555554422111
Q ss_pred --hhhcCCCCCCEEECCCCCCCcc---hhhhhhcCCCCCcEEEccCccc
Q 021196 252 --QELHNFTNLEELILDDSDLHIS---QLLQSIASFTSLKYLSMGFCTL 295 (316)
Q Consensus 252 --~~~~~l~~L~~L~L~~n~l~g~---~ip~~l~~~~~L~~L~l~~N~l 295 (316)
..-...++|++|.+.+|.++.+ .+...+...+.|..|+|++|++
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 0112245555556555555431 1222334455566666666655
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.29 E-value=2.7e-12 Score=102.60 Aligned_cols=104 Identities=32% Similarity=0.443 Sum_probs=29.4
Q ss_pred CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhc-CCCCCCCEEECCCCCCCCccchhhhcCC
Q 021196 179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI-GSLPSLKTLYLSSTNFKGTVVNQELHNF 257 (316)
Q Consensus 179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~-~~l~~L~~L~l~~n~l~g~~p~~~~~~l 257 (316)
+.+|+.|++++|.++.. . .+..+++|+.|++++|.++ .+.+.+ ..+++|++|++++|++..----..+..+
T Consensus 41 l~~L~~L~Ls~N~I~~l--~-~l~~L~~L~~L~L~~N~I~-----~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l 112 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--E-GLPGLPRLKTLDLSNNRIS-----SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSL 112 (175)
T ss_dssp -TT--EEE-TTS--S----T-T----TT--EEE--SS--------S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-
T ss_pred hcCCCEEECCCCCCccc--c-CccChhhhhhcccCCCCCC-----ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcC
Confidence 34445555555544432 1 3344445555555555554 232222 2344555555555554421111234445
Q ss_pred CCCCEEECCCCCCCcch--hhhhhcCCCCCcEEEc
Q 021196 258 TNLEELILDDSDLHISQ--LLQSIASFTSLKYLSM 290 (316)
Q Consensus 258 ~~L~~L~L~~n~l~g~~--ip~~l~~~~~L~~L~l 290 (316)
++|++|++.+|+++... -...+..+|+|+.||-
T Consensus 113 ~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 113 PKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 55555555555554210 1123445555555553
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.25 E-value=6.7e-12 Score=100.36 Aligned_cols=85 Identities=38% Similarity=0.543 Sum_probs=21.8
Q ss_pred CCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccc-cCCCCCCEEEcCCCcCCCccccccccCCCCCC
Q 021196 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL-DSLGNLEELDMSDNAINNLVIPKDYRGLRKLN 208 (316)
Q Consensus 130 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~ 208 (316)
+.+|+.|++++|.++. + +.+..++.|++|++++|+++ .++. .+ ..+++|++|++++|++....--..+..+++|+
T Consensus 41 l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISE-GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR 116 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred hcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-cccc-chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence 4455555555555542 2 12344455555555555544 2322 12 23445555555555444321111333444444
Q ss_pred EEEcCCcccc
Q 021196 209 TLYLGGTEIA 218 (316)
Q Consensus 209 ~L~l~~n~l~ 218 (316)
.|++.+|.++
T Consensus 117 ~L~L~~NPv~ 126 (175)
T PF14580_consen 117 VLSLEGNPVC 126 (175)
T ss_dssp EEE-TT-GGG
T ss_pred eeeccCCccc
Confidence 4444444443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=5.3e-12 Score=106.24 Aligned_cols=135 Identities=24% Similarity=0.309 Sum_probs=81.9
Q ss_pred cCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcC
Q 021196 151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIG 230 (316)
Q Consensus 151 ~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~ 230 (316)
+.....|+++||++|.++ .+.. ...-.|+++.|++++|.+... . .+..+++|++||+++|.++ .+-..-.
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDE-SvKL~Pkir~L~lS~N~i~~v--~-nLa~L~~L~~LDLS~N~Ls-----~~~Gwh~ 349 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDE-SVKLAPKLRRLILSQNRIRTV--Q-NLAELPQLQLLDLSGNLLA-----ECVGWHL 349 (490)
T ss_pred cchHhhhhhccccccchh-hhhh-hhhhccceeEEeccccceeee--h-hhhhcccceEeecccchhH-----hhhhhHh
Confidence 334456677777777665 4443 555566777777777766543 2 4566677777777777665 4433334
Q ss_pred CCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccc
Q 021196 231 SLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA 298 (316)
Q Consensus 231 ~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ 298 (316)
++-+++.|.++.|.+. .+ . .++++=+|..||+++|+|..-.-...++++|-|+.+.|-+|.+.+.
T Consensus 350 KLGNIKtL~La~N~iE-~L-S-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIE-TL-S-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhcCEeeeehhhhhHh-hh-h-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 5556677777777664 22 1 4555566667777777765312234566777777777777776644
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.19 E-value=9.9e-12 Score=106.45 Aligned_cols=238 Identities=20% Similarity=0.180 Sum_probs=166.9
Q ss_pred CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCcccccc-------ccccCCCCCCcEEECCCCCCCc
Q 021196 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEG-------LDTLSRLNNLKFLYLDYNHFNN 145 (316)
Q Consensus 73 ~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-------~~~l~~l~~L~~L~L~~n~l~~ 145 (316)
...++.|+|++|.+..... ..-...+.+.++|+..++++- ++|..-.+. ...+..+++|++|+||+|.|..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa-~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAA-RAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cCceEEEeccCCchhHHHH-HHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3579999999998742211 111234667789999999875 566543322 2456778899999999999875
Q ss_pred ccccc----cCCCCCCCEEEeeCcccccccCc-------------ccccCCCCCCEEEcCCCcCCCcc---ccccccCCC
Q 021196 146 SIFSS----LGGLSSLRNLSLIGNRLIGSIDI-------------KGLDSLGNLEELDMSDNAINNLV---IPKDYRGLR 205 (316)
Q Consensus 146 ~~p~~----~~~l~~L~~L~L~~n~l~g~ip~-------------~~l~~l~~L~~L~L~~n~~~~~~---p~~~~~~l~ 205 (316)
..+.. +..+..|++|.|.+|.+. .... ....+-++|++++.++|++...- ....+...+
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 54443 457899999999999875 2111 13445678999999999986531 123667788
Q ss_pred CCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCc---cchhhhcCCCCCCEEECCCCCCCcc---hhhhhh
Q 021196 206 KLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGT---VVNQELHNFTNLEELILDDSDLHIS---QLLQSI 279 (316)
Q Consensus 206 ~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~---~p~~~~~~l~~L~~L~L~~n~l~g~---~ip~~l 279 (316)
.|+.+.+..|.+...+...+...+..++.|++||+.+|-|+-. .-.+.+..+++|++|++++|.+... .+...+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 9999999999987443334567889999999999999988622 2234677889999999999998641 223333
Q ss_pred -cCCCCCcEEEccCcccccc---cCC--Cccccchhhhhh
Q 021196 280 -ASFTSLKYLSMGFCTLTGA---LHG--QGKLRVSEAFMI 313 (316)
Q Consensus 280 -~~~~~L~~L~l~~N~l~g~---ip~--~~~l~~L~~l~i 313 (316)
...++|+++++.+|.++-. +-. ....|.|+.|.+
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnL 305 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNL 305 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcC
Confidence 3468999999999998732 111 444566666543
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=6.1e-11 Score=99.96 Aligned_cols=127 Identities=24% Similarity=0.329 Sum_probs=102.5
Q ss_pred cccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhh
Q 021196 175 GLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL 254 (316)
Q Consensus 175 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~ 254 (316)
.......|+++||++|.++.. .++..-.+.++.|++++|.+. .+- .+..+++|+.||+++|.++ .+.. +-
T Consensus 279 ~~dTWq~LtelDLS~N~I~~i--DESvKL~Pkir~L~lS~N~i~-----~v~-nLa~L~~L~~LDLS~N~Ls-~~~G-wh 348 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQI--DESVKLAPKLRRLILSQNRIR-----TVQ-NLAELPQLQLLDLSGNLLA-ECVG-WH 348 (490)
T ss_pred ecchHhhhhhccccccchhhh--hhhhhhccceeEEecccccee-----eeh-hhhhcccceEeecccchhH-hhhh-hH
Confidence 444566799999999999873 337778899999999999997 443 4788999999999999987 5543 55
Q ss_pred cCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccccc--ccCCCccccchhhhhhh
Q 021196 255 HNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG--ALHGQGKLRVSEAFMIL 314 (316)
Q Consensus 255 ~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g--~ip~~~~l~~L~~l~i~ 314 (316)
.++-+++.|.|++|.+.. -..+.++-+|..||+++|++.. ++-.+|++|-|+.+.+.
T Consensus 349 ~KLGNIKtL~La~N~iE~---LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIET---LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred hhhcCEeeeehhhhhHhh---hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 678889999999999853 4578889999999999999873 34449999999887653
No 37
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=99.00 E-value=6.5e-10 Score=67.47 Aligned_cols=40 Identities=33% Similarity=0.702 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhhCCC-CCCCCCCCCCCCC-CCCCCcccceEEc
Q 021196 29 EQERYALLQLRHFFND-DQCLQNCWVDDEN-YSDCCQWERVECN 70 (316)
Q Consensus 29 ~~~~~aL~~~~~~~~~-~~~~~~~W~~~~~-~~~~c~w~gv~c~ 70 (316)
++|++||++||+++.+ |...+.+|. .. ..+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~--~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWN--PSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT----TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCC--CcCCCCCeeeccEEeC
Confidence 6799999999999995 557899995 32 2899999999995
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=6.4e-10 Score=73.33 Aligned_cols=61 Identities=26% Similarity=0.452 Sum_probs=42.9
Q ss_pred CCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccc
Q 021196 233 PSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL 295 (316)
Q Consensus 233 ~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l 295 (316)
|+|++|++++|+++ .+|.+.+..+++|++|++++|+++. .-|..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCCcC
Confidence 45677777777776 6666667777777777777777764 4445677777777777777764
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.9e-09 Score=71.07 Aligned_cols=57 Identities=33% Similarity=0.532 Sum_probs=22.2
Q ss_pred CCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCc
Q 021196 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGT 215 (316)
Q Consensus 157 L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n 215 (316)
|++|++++|++. .+|+..|..+++|++|++++|.++.. ++..|..+++|++|++++|
T Consensus 3 L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 334444444333 23333334444444444444444332 2223444444444444443
No 40
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=1.1e-09 Score=92.29 Aligned_cols=207 Identities=22% Similarity=0.226 Sum_probs=135.5
Q ss_pred CCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCC
Q 021196 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG 180 (316)
Q Consensus 101 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~ 180 (316)
..++++.+||.+|.++....- +..+.++|.|++|+++.|.++..|-..-....+|++|.|.+..+.-......+..+|
T Consensus 69 ~~~~v~elDL~~N~iSdWseI--~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEI--GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHHH--HHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 457899999999998765322 234678999999999999998554433246789999999998887554455778899
Q ss_pred CCCEEEcCCCcCCCcccc-ccccC-CCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCC
Q 021196 181 NLEELDMSDNAINNLVIP-KDYRG-LRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT 258 (316)
Q Consensus 181 ~L~~L~L~~n~~~~~~p~-~~~~~-l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~ 258 (316)
.++.|+++.|++...... +.... .+.++++.+..|..... ..+-..-.-++++..+-+..|.+...-..+....++
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w--~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p 224 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLW--LNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP 224 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHH--HHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence 999999999955432111 11111 13556666666544200 011122234567777778777665333333455667
Q ss_pred CCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccccccc----CC---Cccccchhhh
Q 021196 259 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGAL----HG---QGKLRVSEAF 311 (316)
Q Consensus 259 ~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~i----p~---~~~l~~L~~l 311 (316)
.+..|.|+.|+|....-.+.+.++++|..|.+++|.+...+ +. ++.+++++.|
T Consensus 225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL 284 (418)
T ss_pred cchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence 77788888888865455567788888888888888775443 22 4555555544
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.79 E-value=7.8e-10 Score=101.80 Aligned_cols=175 Identities=29% Similarity=0.398 Sum_probs=77.7
Q ss_pred cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL 179 (316)
Q Consensus 100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l 179 (316)
..+++|+.|++.+|.+.+.... +..+++|++|++++|.++... .+..++.|+.|++++|.+. .+. .+..+
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~--~~~~l 161 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DIS--GLESL 161 (414)
T ss_pred ccccceeeeeccccchhhcccc-----hhhhhcchheecccccccccc--chhhccchhhheeccCcch-hcc--CCccc
Confidence 3444455555555544432221 334455555555555444211 1233444555555555544 222 23334
Q ss_pred CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCC
Q 021196 180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTN 259 (316)
Q Consensus 180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~ 259 (316)
+.|+.+++++|.+...-+.. ...+.+++.+++..|.+... ..+..+..+..+++..|.++ .+- .+..+..
T Consensus 162 ~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i------~~~~~~~~l~~~~l~~n~i~-~~~--~l~~~~~ 231 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI------EGLDLLKKLVLLSLLDNKIS-KLE--GLNELVM 231 (414)
T ss_pred hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc------cchHHHHHHHHhhcccccce-ecc--Ccccchh
Confidence 44555555555544421100 23444455555555544311 11111112222233333333 110 1111222
Q ss_pred --CCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196 260 --LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296 (316)
Q Consensus 260 --L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~ 296 (316)
|+.+++++|.+. .++..+..+..+..+++.+|++.
T Consensus 232 ~~L~~l~l~~n~i~--~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 232 LHLRELYLSGNRIS--RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred HHHHHHhcccCccc--cccccccccccccccchhhcccc
Confidence 667777777775 34455667777777777777665
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.8e-10 Score=96.93 Aligned_cols=183 Identities=24% Similarity=0.226 Sum_probs=121.6
Q ss_pred CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcc-cccccCcccccCCCC
Q 021196 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNR-LIGSIDIKGLDSLGN 181 (316)
Q Consensus 103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~g~ip~~~l~~l~~ 181 (316)
+.||+|||+...++..--. ..+..+.+|+.|.+.++.+...+...++.-.+|+.|+++.+. ++..--.-.+.+++.
T Consensus 185 sRlq~lDLS~s~it~stl~---~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLH---GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHHH---HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 4589999998887643221 236778899999999999998888889989999999998864 321111124578889
Q ss_pred CCEEEcCCCcCCCccccccccC-CCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCC-CCCccchhhhcCCCC
Q 021196 182 LEELDMSDNAINNLVIPKDYRG-LRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTN-FKGTVVNQELHNFTN 259 (316)
Q Consensus 182 L~~L~L~~n~~~~~~p~~~~~~-l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~-l~g~~p~~~~~~l~~ 259 (316)
|..|+|+.+.++.......... -.+|+.|++++..-.-+ ...+.--...+++|..|||++|. ++...- .++.+++.
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~-~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~-~~~~kf~~ 339 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ-KSHLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFKFNY 339 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh-hhHHHHHHHhCCceeeeccccccccCchHH-HHHHhcch
Confidence 9999999988765433212222 24677788877643211 11333445678888888888774 333222 36777888
Q ss_pred CCEEECCCCCCCcchhhhh---hcCCCCCcEEEccCc
Q 021196 260 LEELILDDSDLHISQLLQS---IASFTSLKYLSMGFC 293 (316)
Q Consensus 260 L~~L~L~~n~l~g~~ip~~---l~~~~~L~~L~l~~N 293 (316)
|++|.++.|.. .+|+. +...++|.+||+.++
T Consensus 340 L~~lSlsRCY~---i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 340 LQHLSLSRCYD---IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred heeeehhhhcC---CChHHeeeeccCcceEEEEeccc
Confidence 88888887764 34443 456678888887654
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=4e-10 Score=94.91 Aligned_cols=175 Identities=23% Similarity=0.204 Sum_probs=128.6
Q ss_pred CCCcEEECCCCCCCcc-cccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCc-CCCccccccccCCCCCC
Q 021196 131 NNLKFLYLDYNHFNNS-IFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA-INNLVIPKDYRGLRKLN 208 (316)
Q Consensus 131 ~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~-~~~~~p~~~~~~l~~L~ 208 (316)
+.|++|||++..++.. ...-+..+.+|+.|.+.++++.+.|-. .+..-.+|+.|+|+.+. ++.....-.+.+++.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 3599999999888743 333456789999999999999988776 78888999999999874 44322222567899999
Q ss_pred EEEcCCccccccccchhhhhcCCC-CCCCEEECCCCCC--CC-ccchhhhcCCCCCCEEECCCCC-CCcchhhhhhcCCC
Q 021196 209 TLYLGGTEIAMIDGSKVLQSIGSL-PSLKTLYLSSTNF--KG-TVVNQELHNFTNLEELILDDSD-LHISQLLQSIASFT 283 (316)
Q Consensus 209 ~L~l~~n~l~~~~~~~~p~~~~~l-~~L~~L~l~~n~l--~g-~~p~~~~~~l~~L~~L~L~~n~-l~g~~ip~~l~~~~ 283 (316)
.|+++++.++.. .+-..+... ++|+.|++++..- .. .+. .....+++|.+|||++|. ++. ..-..+.+++
T Consensus 264 ~LNlsWc~l~~~---~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~ 338 (419)
T KOG2120|consen 264 ELNLSWCFLFTE---KVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFN 338 (419)
T ss_pred hcCchHhhccch---hhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCc-hHHHHHHhcc
Confidence 999999988733 222223322 4789999988742 11 222 145689999999999976 555 6677888999
Q ss_pred CCcEEEccCcccccccCC----Cccccchhhhhh
Q 021196 284 SLKYLSMGFCTLTGALHG----QGKLRVSEAFMI 313 (316)
Q Consensus 284 ~L~~L~l~~N~l~g~ip~----~~~l~~L~~l~i 313 (316)
.|++|.++.|.. -+|. +...|.|.+|++
T Consensus 339 ~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 339 YLQHLSLSRCYD--IIPETLLELNSKPSLVYLDV 370 (419)
T ss_pred hheeeehhhhcC--CChHHeeeeccCcceEEEEe
Confidence 999999998863 4554 677777777764
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.66 E-value=2.9e-08 Score=82.89 Aligned_cols=225 Identities=17% Similarity=0.140 Sum_probs=152.3
Q ss_pred CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccc-------cccccCCCCCCcEEECCCCCCCc
Q 021196 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENE-------GLDTLSRLNNLKFLYLDYNHFNN 145 (316)
Q Consensus 73 ~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-------~~~~l~~l~~L~~L~L~~n~l~~ 145 (316)
...+++++|++|.+.....-.+ ...+.+-.+|+..+++.- ++|..-.+ ....+.+|++|+..+||+|.|..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l-~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEEL-CNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hcceeEEeccCCcccHHHHHHH-HHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3568999999998742211000 123456678888888875 44543221 13457899999999999999987
Q ss_pred ccccc----cCCCCCCCEEEeeCcccccccCccc-------------ccCCCCCCEEEcCCCcCCCcc---ccccccCCC
Q 021196 146 SIFSS----LGGLSSLRNLSLIGNRLIGSIDIKG-------------LDSLGNLEELDMSDNAINNLV---IPKDYRGLR 205 (316)
Q Consensus 146 ~~p~~----~~~l~~L~~L~L~~n~l~g~ip~~~-------------l~~l~~L~~L~L~~n~~~~~~---p~~~~~~l~ 205 (316)
..|+. ++.-+.|.+|.+++|.+. ++.... ..+-|.|++.....|++..-. ....+....
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 76665 456789999999999874 332212 235678999999999976421 111333446
Q ss_pred CCCEEEcCCccccccccc-hhhhhcCCCCCCCEEECCCCCCCCc---cchhhhcCCCCCCEEECCCCCCCcchhhhhh--
Q 021196 206 KLNTLYLGGTEIAMIDGS-KVLQSIGSLPSLKTLYLSSTNFKGT---VVNQELHNFTNLEELILDDSDLHISQLLQSI-- 279 (316)
Q Consensus 206 ~L~~L~l~~n~l~~~~~~-~~p~~~~~l~~L~~L~l~~n~l~g~---~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l-- 279 (316)
.|+.+.+..|.+...+-. -+...+..+.+|++||+..|.++-. .....+..++.|+.|.+.+|-++.+.....+
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 899999999998632111 1223456788999999999988722 2223567788899999999988752222222
Q ss_pred ---cCCCCCcEEEccCcccccccC
Q 021196 280 ---ASFTSLKYLSMGFCTLTGALH 300 (316)
Q Consensus 280 ---~~~~~L~~L~l~~N~l~g~ip 300 (316)
...++|+.|...+|...|.+-
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~i 289 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGII 289 (388)
T ss_pred hhhhcCCCccccccchhhhcCcee
Confidence 235889999999998876643
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.61 E-value=8e-09 Score=86.14 Aligned_cols=198 Identities=19% Similarity=0.101 Sum_probs=140.3
Q ss_pred cccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCc----cccc---------ccCCCCCCCEEEeeC
Q 021196 98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN----SIFS---------SLGGLSSLRNLSLIG 164 (316)
Q Consensus 98 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~----~~p~---------~~~~l~~L~~L~L~~ 164 (316)
.+.++++|+..+||.|.|....|....+.+++-..|.+|.+++|.+-- .+.. -..+-|.|++.....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 467899999999999999888888777788999999999999997642 1221 123558999999999
Q ss_pred cccccccCc----ccccCCCCCCEEEcCCCcCCCcccc----ccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCC
Q 021196 165 NRLIGSIDI----KGLDSLGNLEELDMSDNAINNLVIP----KDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLK 236 (316)
Q Consensus 165 n~l~g~ip~----~~l~~l~~L~~L~L~~n~~~~~~p~----~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~ 236 (316)
|++.. .|. ..+..-..|+++.+..|.+.-.... ..+..+.+|+.|++..|.|+..+...+...+..++.|+
T Consensus 167 NRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 NRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred chhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 99752 222 2333445789999999977543111 13446789999999999998443334556777888899
Q ss_pred EEECCCCCCCCccchhhh-----cCCCCCCEEECCCCCCCcchhhh-----hh-cCCCCCcEEEccCcccc
Q 021196 237 TLYLSSTNFKGTVVNQEL-----HNFTNLEELILDDSDLHISQLLQ-----SI-ASFTSLKYLSMGFCTLT 296 (316)
Q Consensus 237 ~L~l~~n~l~g~~p~~~~-----~~l~~L~~L~L~~n~l~g~~ip~-----~l-~~~~~L~~L~l~~N~l~ 296 (316)
.|.+..|-++..-....+ ...++|..|...+|.+.++.|-. .. .+++-|..|.+.+|++.
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 999999987744333222 13578888999999876633322 11 35677777778888876
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.60 E-value=6.5e-10 Score=103.68 Aligned_cols=127 Identities=28% Similarity=0.248 Sum_probs=61.0
Q ss_pred CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCC
Q 021196 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSL 235 (316)
Q Consensus 156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L 235 (316)
.|...+.++|.+. .+.. .+.-++.++.|+|++|+++.. . .+..+++|++|||++|.+. .+|..-..-..|
T Consensus 165 ~L~~a~fsyN~L~-~mD~-SLqll~ale~LnLshNk~~~v--~-~Lr~l~~LkhLDlsyN~L~-----~vp~l~~~gc~L 234 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDE-SLQLLPALESLNLSHNKFTKV--D-NLRRLPKLKHLDLSYNCLR-----HVPQLSMVGCKL 234 (1096)
T ss_pred hHhhhhcchhhHH-hHHH-HHHHHHHhhhhccchhhhhhh--H-HHHhcccccccccccchhc-----cccccchhhhhh
Confidence 3444445555543 2222 444455555555555555543 2 4555555555555555554 333211111125
Q ss_pred CEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccc
Q 021196 236 KTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL 295 (316)
Q Consensus 236 ~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l 295 (316)
+.|.+++|.++ ++- .+.++++|+.||+++|-+.+..--..+..+..|+.|.|.+|.+
T Consensus 235 ~~L~lrnN~l~-tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 235 QLLNLRNNALT-TLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeeeecccHHH-hhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 55555555554 332 3445555555555555554422222334444555555555554
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.57 E-value=4.5e-08 Score=96.91 Aligned_cols=182 Identities=23% Similarity=0.281 Sum_probs=112.9
Q ss_pred CCCCcEEEccCCcc-CCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCC
Q 021196 102 FQQLESLYLIGNNI-AGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG 180 (316)
Q Consensus 102 l~~L~~L~L~~n~~-~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~ 180 (316)
.++|+.|-+..|.. -..++. ..|..++.|++|||++|.--+.+|..++++-+|++|+++++.+. .+|. .+.++.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~---~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk 618 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISG---EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLK 618 (889)
T ss_pred CCccceEEEeecchhhhhcCH---HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHHH
Confidence 34678888877752 222222 23777888888888887766788888888888888888888877 7787 888888
Q ss_pred CCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCC
Q 021196 181 NLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNL 260 (316)
Q Consensus 181 ~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L 260 (316)
+|.+|++..+.....+|. ....+++|++|.+...... .+. .....+.++..|+.+....... .+-. .+..+++|
T Consensus 619 ~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~-~~~-~~l~el~~Le~L~~ls~~~~s~--~~~e-~l~~~~~L 692 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALS-NDK-LLLKELENLEHLENLSITISSV--LLLE-DLLGMTRL 692 (889)
T ss_pred hhheeccccccccccccc-hhhhcccccEEEeeccccc-cch-hhHHhhhcccchhhheeecchh--HhHh-hhhhhHHH
Confidence 888888888776554544 6666888888888766533 211 3334455666666665533322 1111 22222332
Q ss_pred C----EEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196 261 E----ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296 (316)
Q Consensus 261 ~----~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~ 296 (316)
. .+.+.++... ..+..+..+.+|+.|.+.++...
T Consensus 693 ~~~~~~l~~~~~~~~--~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 693 RSLLQSLSIEGCSKR--TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred HHHhHhhhhcccccc--eeecccccccCcceEEEEcCCCc
Confidence 2 2222222222 33445666667777777666654
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.55 E-value=3.4e-09 Score=79.51 Aligned_cols=134 Identities=19% Similarity=0.184 Sum_probs=75.4
Q ss_pred CCEEEeeCcccccccCc--ccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCC
Q 021196 157 LRNLSLIGNRLIGSIDI--KGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPS 234 (316)
Q Consensus 157 L~~L~L~~n~l~g~ip~--~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~ 234 (316)
+..++|++|++. .++. ..+.....|...+|++|.+.. +|+..-..++.++++++++|.++ .+|..+..++.
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-----dvPeE~Aam~a 101 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-----DVPEELAAMPA 101 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-----hchHHHhhhHH
Confidence 444555555543 2332 122333445556666666665 34422234456677777777776 66766777777
Q ss_pred CCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC
Q 021196 235 LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 301 (316)
Q Consensus 235 L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~ 301 (316)
|+.|+++.|.+. ..|. .+..+.++..|+..+|.+. +||..+-.-...-..++.++.+.+.-+.
T Consensus 102 Lr~lNl~~N~l~-~~p~-vi~~L~~l~~Lds~~na~~--eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 102 LRSLNLRFNPLN-AEPR-VIAPLIKLDMLDSPENARA--EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred hhhcccccCccc-cchH-HHHHHHhHHHhcCCCCccc--cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 777777777776 4554 4555666777777766665 5555433333333344555666655554
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.54 E-value=8.2e-09 Score=95.03 Aligned_cols=106 Identities=35% Similarity=0.382 Sum_probs=83.1
Q ss_pred CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccC
Q 021196 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (316)
Q Consensus 73 ~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 152 (316)
......+++.+|.+..... .+..+++|++|++++|.++...+ +..++.|+.|++++|.++. ...+.
T Consensus 94 ~~~l~~l~l~~n~i~~i~~------~l~~~~~L~~L~ls~N~I~~i~~------l~~l~~L~~L~l~~N~i~~--~~~~~ 159 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIEN------LLSSLVNLQVLDLSFNKITKLEG------LSTLTLLKELNLSGNLISD--ISGLE 159 (414)
T ss_pred ccceeeeeccccchhhccc------chhhhhcchheeccccccccccc------hhhccchhhheeccCcchh--ccCCc
Confidence 3568889999988754322 15779999999999999987654 7788889999999999973 33455
Q ss_pred CCCCCCEEEeeCcccccccCccc-ccCCCCCCEEEcCCCcCCC
Q 021196 153 GLSSLRNLSLIGNRLIGSIDIKG-LDSLGNLEELDMSDNAINN 194 (316)
Q Consensus 153 ~l~~L~~L~L~~n~l~g~ip~~~-l~~l~~L~~L~L~~n~~~~ 194 (316)
.+++|+.+++++|++. .+.. . ...+.+++.+.+.+|.+..
T Consensus 160 ~l~~L~~l~l~~n~i~-~ie~-~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIV-DIEN-DELSELISLEELDLGGNSIRE 200 (414)
T ss_pred cchhhhcccCCcchhh-hhhh-hhhhhccchHHHhccCCchhc
Confidence 6899999999999987 3442 1 4778889999999998764
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.51 E-value=4e-08 Score=97.26 Aligned_cols=151 Identities=26% Similarity=0.307 Sum_probs=91.8
Q ss_pred CCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCC--CCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH--FNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL 179 (316)
Q Consensus 102 l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l 179 (316)
....+...+.+|.+.-... -...++|++|-+..|. +.......|..++.|++|||++|.-.+.+|. .++.+
T Consensus 522 ~~~~rr~s~~~~~~~~~~~------~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~L 594 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAG------SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGEL 594 (889)
T ss_pred hhheeEEEEeccchhhccC------CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhh
Confidence 3455666666665432221 1234467777777775 3333344466778888888887766667776 77778
Q ss_pred CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCC-ccchhhhcCCC
Q 021196 180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKG-TVVNQELHNFT 258 (316)
Q Consensus 180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g-~~p~~~~~~l~ 258 (316)
-+|++|+++++.++. +|. .+.++..|.+|++..+... . .+|.....+++|++|.+....... ..-..++..+.
T Consensus 595 i~LryL~L~~t~I~~-LP~-~l~~Lk~L~~Lnl~~~~~l-~---~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISH-LPS-GLGNLKKLIYLNLEVTGRL-E---SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred hhhhcccccCCCccc-cch-HHHHHHhhheecccccccc-c---cccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 888888888887774 566 7778888888888777654 2 334445557778877775543211 11112344445
Q ss_pred CCCEEEC
Q 021196 259 NLEELIL 265 (316)
Q Consensus 259 ~L~~L~L 265 (316)
+|+.+..
T Consensus 669 ~L~~ls~ 675 (889)
T KOG4658|consen 669 HLENLSI 675 (889)
T ss_pred chhhhee
Confidence 5555444
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.51 E-value=5.5e-09 Score=97.65 Aligned_cols=169 Identities=24% Similarity=0.266 Sum_probs=114.4
Q ss_pred cCCCCCCcEEECCCCCCCcccccccCCC-CCCCEEEeeCccc----------ccccCcccccCCCCCCEEEcCCCcCCCc
Q 021196 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGL-SSLRNLSLIGNRL----------IGSIDIKGLDSLGNLEELDMSDNAINNL 195 (316)
Q Consensus 127 l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l----------~g~ip~~~l~~l~~L~~L~L~~n~~~~~ 195 (316)
+..+..|++|.+.++.+.- ...+..+ ..|++|.-. |.+ .|.+.. . ...-+|...+.++|.+.-.
T Consensus 105 ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~n-s-~~Wn~L~~a~fsyN~L~~m 179 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISN-S-PVWNKLATASFSYNRLVLM 179 (1096)
T ss_pred eccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhcccccc-c-hhhhhHhhhhcchhhHHhH
Confidence 6677888888888887752 1111111 223333221 111 111111 0 1123577788889988753
Q ss_pred cccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchh
Q 021196 196 VIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL 275 (316)
Q Consensus 196 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~i 275 (316)
..++.-++.++.|+|+.|+++ .. +.+..++.|++||+++|.+. .+|.-....++ |..|.+++|.++ .+
T Consensus 180 --D~SLqll~ale~LnLshNk~~-----~v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~--tL 247 (1096)
T KOG1859|consen 180 --DESLQLLPALESLNLSHNKFT-----KV-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT--TL 247 (1096)
T ss_pred --HHHHHHHHHhhhhccchhhhh-----hh-HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH--hh
Confidence 347778899999999999997 33 37888999999999999998 77752333444 999999999997 33
Q ss_pred hhhhcCCCCCcEEEccCcccccc--cCCCccccchhhhhh
Q 021196 276 LQSIASFTSLKYLSMGFCTLTGA--LHGQGKLRVSEAFMI 313 (316)
Q Consensus 276 p~~l~~~~~L~~L~l~~N~l~g~--ip~~~~l~~L~~l~i 313 (316)
..+.++++|+.||+++|-+.+. +-.++.+..|+.|++
T Consensus 248 -~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~L 286 (1096)
T KOG1859|consen 248 -RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWL 286 (1096)
T ss_pred -hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhh
Confidence 4688999999999999988753 222666777777664
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=1.3e-07 Score=80.09 Aligned_cols=183 Identities=19% Similarity=0.223 Sum_probs=120.4
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcc-cccccC
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-IFSSLG 152 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~ 152 (316)
.+|.++||.+|.+....+ ....+.++++|+.|+++.|.+...|... -....+|++|-|.+..+.-. ....+.
T Consensus 71 ~~v~elDL~~N~iSdWse---I~~ile~lP~l~~LNls~N~L~s~I~~l----p~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSE---IGAILEQLPALTTLNLSCNSLSSDIKSL----PLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred hhhhhhhcccchhccHHH---HHHHHhcCccceEeeccCCcCCCccccC----cccccceEEEEEcCCCCChhhhhhhhh
Confidence 479999999998754333 2455789999999999999998665442 13567899999888776533 333456
Q ss_pred CCCCCCEEEeeCcccccc-cCccc---------------------------ccCCCCCCEEEcCCCcCCCccccccccCC
Q 021196 153 GLSSLRNLSLIGNRLIGS-IDIKG---------------------------LDSLGNLEELDMSDNAINNLVIPKDYRGL 204 (316)
Q Consensus 153 ~l~~L~~L~L~~n~l~g~-ip~~~---------------------------l~~l~~L~~L~L~~n~~~~~~p~~~~~~l 204 (316)
.+|.+++|+++.|.+.-- +.+.. -..++++..+-+..|.+......+....+
T Consensus 144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~ 223 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF 223 (418)
T ss_pred cchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence 788888888888843100 00000 01245666666667766554444455566
Q ss_pred CCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchh-----hhcCCCCCCEEECC
Q 021196 205 RKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQ-----ELHNFTNLEELILD 266 (316)
Q Consensus 205 ~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~-----~~~~l~~L~~L~L~ 266 (316)
+.+..|+++.|++.+. .-.+.+..++.|..|.+++|.+.+.+-.. .++.+++++.|+=+
T Consensus 224 p~~~~LnL~~~~idsw---asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 224 PSLSCLNLGANNIDSW---ASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CcchhhhhcccccccH---HHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 7777888888887533 33456788888888888888876544321 25667777777633
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.31 E-value=9.6e-07 Score=53.60 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=19.9
Q ss_pred CCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196 259 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296 (316)
Q Consensus 259 ~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~ 296 (316)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCC
Confidence 4556666666665 35555566666666666666555
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=1.7e-08 Score=75.74 Aligned_cols=132 Identities=18% Similarity=0.124 Sum_probs=76.5
Q ss_pred CcEEECCCCCCCcccccc---cCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCE
Q 021196 133 LKFLYLDYNHFNNSIFSS---LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNT 209 (316)
Q Consensus 133 L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~ 209 (316)
+..++|+.|.+- .+++. +.....|+..+|++|.|. .+|+..-..++.++.|++++|.++. +|. .+..++.|+.
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPe-E~Aam~aLr~ 104 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPE-ELAAMPALRS 104 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chH-HHhhhHHhhh
Confidence 344555555442 22222 233445555566666665 4555333444566777777777766 555 5777777777
Q ss_pred EEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhh
Q 021196 210 LYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL 276 (316)
Q Consensus 210 L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip 276 (316)
|+++.|.+. ..|..+..+.++..|+..+|.+. ++|.+.+ .-...-..++.++.+.+ .-+
T Consensus 105 lNl~~N~l~-----~~p~vi~~L~~l~~Lds~~na~~-eid~dl~-~s~~~al~~lgnepl~~-~~~ 163 (177)
T KOG4579|consen 105 LNLRFNPLN-----AEPRVIAPLIKLDMLDSPENARA-EIDVDLF-YSSLPALIKLGNEPLGD-ETK 163 (177)
T ss_pred cccccCccc-----cchHHHHHHHhHHHhcCCCCccc-cCcHHHh-ccccHHHHHhcCCcccc-cCc
Confidence 777777776 66666666777777777777766 6665322 22222333445666655 444
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.27 E-value=6.9e-07 Score=86.46 Aligned_cols=153 Identities=23% Similarity=0.289 Sum_probs=101.7
Q ss_pred CCCcEEECCCCCC-CcccccccC-CCCCCCEEEeeCcccccc-cCcccccCCCCCCEEEcCCCcCCCccccccccCCCCC
Q 021196 131 NNLKFLYLDYNHF-NNSIFSSLG-GLSSLRNLSLIGNRLIGS-IDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKL 207 (316)
Q Consensus 131 ~~L~~L~L~~n~l-~~~~p~~~~-~l~~L~~L~L~~n~l~g~-ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L 207 (316)
.+|++|++++... +..-|..++ .+|+|+.|.+++-.+... +. ....++++|..||+++.+++.. . .++++++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~TnI~nl--~-GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGTNISNL--S-GISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH-HHhhccCccceeecCCCCccCc--H-HHhccccH
Confidence 5788888887543 223344444 578899999888766422 22 2557888899999999888764 3 77888888
Q ss_pred CEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCc--cch---hhhcCCCCCCEEECCCCCCCcchhhhhhcCC
Q 021196 208 NTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGT--VVN---QELHNFTNLEELILDDSDLHISQLLQSIASF 282 (316)
Q Consensus 208 ~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~--~p~---~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~ 282 (316)
+.|.+.+=.+... .....+.++++|++||+|....... +.. +.-..+|+|+.||.+++.+..+.+-..+..-
T Consensus 198 q~L~mrnLe~e~~---~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH 274 (699)
T KOG3665|consen 198 QVLSMRNLEFESY---QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH 274 (699)
T ss_pred HHHhccCCCCCch---hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC
Confidence 8888887777633 3334677888999999988765421 111 1224578899999998888873333334445
Q ss_pred CCCcEEEc
Q 021196 283 TSLKYLSM 290 (316)
Q Consensus 283 ~~L~~L~l 290 (316)
++|+.+..
T Consensus 275 ~~L~~i~~ 282 (699)
T KOG3665|consen 275 PNLQQIAA 282 (699)
T ss_pred ccHhhhhh
Confidence 55555543
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.22 E-value=7.2e-07 Score=86.34 Aligned_cols=151 Identities=17% Similarity=0.223 Sum_probs=108.3
Q ss_pred CCCCEEEeeCcccccc-cCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCC
Q 021196 155 SSLRNLSLIGNRLIGS-IDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLP 233 (316)
Q Consensus 155 ~~L~~L~L~~n~l~g~-ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~ 233 (316)
.+|++|++++...... -|...-.-+|+|+.|.+++-.+...-......++++|..||+++++++ .+ ..+++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-----nl-~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-----NL-SGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-----Cc-HHHhccc
Confidence 6899999988654322 222122458999999999987765432336678999999999999997 44 6789999
Q ss_pred CCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcch-hh----hhhcCCCCCcEEEccCcccccccCC--Ccccc
Q 021196 234 SLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQ-LL----QSIASFTSLKYLSMGFCTLTGALHG--QGKLR 306 (316)
Q Consensus 234 ~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~-ip----~~l~~~~~L~~L~l~~N~l~g~ip~--~~~l~ 306 (316)
+|++|.+.+-.+...-.-..+.++++|++||+|........ +. +.-..+|+|+.||.|+..+.+.+-+ +..-+
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHP 275 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCc
Confidence 99999998887764222236778999999999987754322 22 2224589999999999998877655 33344
Q ss_pred chhhh
Q 021196 307 VSEAF 311 (316)
Q Consensus 307 ~L~~l 311 (316)
+|+.+
T Consensus 276 ~L~~i 280 (699)
T KOG3665|consen 276 NLQQI 280 (699)
T ss_pred cHhhh
Confidence 44443
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=2.9e-06 Score=51.46 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=14.1
Q ss_pred CCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCC
Q 021196 207 LNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFK 246 (316)
Q Consensus 207 L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~ 246 (316)
|++|++++|+++ .+|+.++++++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-----~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-----DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-----SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-----ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444443 33333444444444444444443
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.97 E-value=1.7e-05 Score=71.45 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=83.6
Q ss_pred ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (316)
Q Consensus 99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~ 178 (316)
+..+.+++.|++++|.++.. |. + ..+|++|.+++|.--..+|..+. ++|++|++++|.....+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P~-----L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~----- 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-PV-----L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE----- 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-CC-----C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc-----
Confidence 34568899999999976542 31 1 24699999988543335665442 5899999999843335554
Q ss_pred CCCCCEEEcCCCcCCC--ccccccccCCCCCCEEEcCCccccccccchhhhhcCCC-CCCCEEECCCCCCCCccchhhhc
Q 021196 179 LGNLEELDMSDNAINN--LVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSL-PSLKTLYLSSTNFKGTVVNQELH 255 (316)
Q Consensus 179 l~~L~~L~L~~n~~~~--~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l-~~L~~L~l~~n~l~g~~p~~~~~ 255 (316)
+|+.|++..+.... .+|+ +|+.|.+..++.... ..+|. .+ ++|++|++++|... .+|. .+.
T Consensus 113 --sLe~L~L~~n~~~~L~~LPs-------sLk~L~I~~~n~~~~--~~lp~---~LPsSLk~L~Is~c~~i-~LP~-~LP 176 (426)
T PRK15386 113 --SVRSLEIKGSATDSIKNVPN-------GLTSLSINSYNPENQ--ARIDN---LISPSLKTLSLTGCSNI-ILPE-KLP 176 (426)
T ss_pred --ccceEEeCCCCCcccccCcc-------hHhheeccccccccc--ccccc---ccCCcccEEEecCCCcc-cCcc-ccc
Confidence 47778887665432 2232 466777644321100 01221 12 47899999888765 3443 333
Q ss_pred CCCCCCEEECCCC
Q 021196 256 NFTNLEELILDDS 268 (316)
Q Consensus 256 ~l~~L~~L~L~~n 268 (316)
.+|+.|+++.+
T Consensus 177 --~SLk~L~ls~n 187 (426)
T PRK15386 177 --ESLQSITLHIE 187 (426)
T ss_pred --ccCcEEEeccc
Confidence 57888888776
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.87 E-value=2.8e-05 Score=62.51 Aligned_cols=84 Identities=27% Similarity=0.281 Sum_probs=37.0
Q ss_pred CCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEE
Q 021196 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLY 211 (316)
Q Consensus 132 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~ 211 (316)
+...+||++|.+.. -..|..++.|..|.+++|+++ .|.+.--.-+++|..|.|.+|++....--..+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 34455555555431 122344555555555555554 222212222344555555555544321111234445555555
Q ss_pred cCCcccc
Q 021196 212 LGGTEIA 218 (316)
Q Consensus 212 l~~n~l~ 218 (316)
+-+|..+
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 5555444
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.81 E-value=4.1e-05 Score=61.57 Aligned_cols=110 Identities=23% Similarity=0.190 Sum_probs=79.7
Q ss_pred CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCC
Q 021196 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL 182 (316)
Q Consensus 103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L 182 (316)
.....+||++|.+... + .|..++.|.+|.+.+|.++..-|.--.-+++|+.|.|.+|++..--.-..+..+++|
T Consensus 42 d~~d~iDLtdNdl~~l-~-----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL-D-----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred cccceecccccchhhc-c-----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 4567789999987543 2 278889999999999999855554444568899999999987621111257788999
Q ss_pred CEEEcCCCcCCCccc--cccccCCCCCCEEEcCCcccc
Q 021196 183 EELDMSDNAINNLVI--PKDYRGLRKLNTLYLGGTEIA 218 (316)
Q Consensus 183 ~~L~L~~n~~~~~~p--~~~~~~l~~L~~L~l~~n~l~ 218 (316)
++|.+-+|.++..-- ...+..+++|+.||+..-...
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 999999998875311 114567889999998775543
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00011 Score=66.46 Aligned_cols=132 Identities=16% Similarity=0.117 Sum_probs=79.7
Q ss_pred cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (316)
Q Consensus 75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 154 (316)
..+.|+++++.+...+. + -++|++|.++++.--..+|.. + .++|++|++++|..-..+|.
T Consensus 53 ~l~~L~Is~c~L~sLP~-------L--P~sLtsL~Lsnc~nLtsLP~~----L--P~nLe~L~Ls~Cs~L~sLP~----- 112 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV-------L--PNELTEITIENCNNLTTLPGS----I--PEGLEKLTVCHCPEISGLPE----- 112 (426)
T ss_pred CCCEEEeCCCCCcccCC-------C--CCCCcEEEccCCCCcccCCch----h--hhhhhheEccCccccccccc-----
Confidence 45688898886643221 1 236999999886543444431 3 35899999999843234554
Q ss_pred CCCCEEEeeCcccc--cccCcccccCCCCCCEEEcCCCcCCCcccccccc-CC-CCCCEEEcCCccccccccchhhhhcC
Q 021196 155 SSLRNLSLIGNRLI--GSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYR-GL-RKLNTLYLGGTEIAMIDGSKVLQSIG 230 (316)
Q Consensus 155 ~~L~~L~L~~n~l~--g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~-~l-~~L~~L~l~~n~l~~~~~~~~p~~~~ 230 (316)
+|+.|+++.+... +.+|. +|+.|.+.+++..... .+. .+ ++|++|++++|... .+|+.+-
T Consensus 113 -sLe~L~L~~n~~~~L~~LPs-------sLk~L~I~~~n~~~~~---~lp~~LPsSLk~L~Is~c~~i-----~LP~~LP 176 (426)
T PRK15386 113 -SVRSLEIKGSATDSIKNVPN-------GLTSLSINSYNPENQA---RIDNLISPSLKTLSLTGCSNI-----ILPEKLP 176 (426)
T ss_pred -ccceEEeCCCCCcccccCcc-------hHhheecccccccccc---ccccccCCcccEEEecCCCcc-----cCccccc
Confidence 4777888766542 23343 5777777543321111 111 12 58999999988865 4443332
Q ss_pred CCCCCCEEECCCCC
Q 021196 231 SLPSLKTLYLSSTN 244 (316)
Q Consensus 231 ~l~~L~~L~l~~n~ 244 (316)
.+|+.|+++.+.
T Consensus 177 --~SLk~L~ls~n~ 188 (426)
T PRK15386 177 --ESLQSITLHIEQ 188 (426)
T ss_pred --ccCcEEEecccc
Confidence 478999988763
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=5.6e-05 Score=63.15 Aligned_cols=66 Identities=27% Similarity=0.424 Sum_probs=28.6
Q ss_pred cCCCCCCCEEEeeCc--ccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccc
Q 021196 151 LGGLSSLRNLSLIGN--RLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEI 217 (316)
Q Consensus 151 ~~~l~~L~~L~L~~n--~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l 217 (316)
+..+++|++|.++.| +..+.++. ....+++|+++++++|++...---..+..+.+|..|++.+|..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 334455555555555 33333333 2333455555555555544210001223334444555544443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.29 E-value=0.0014 Score=49.59 Aligned_cols=13 Identities=15% Similarity=0.370 Sum_probs=4.5
Q ss_pred cccCCCCCCEEEc
Q 021196 175 GLDSLGNLEELDM 187 (316)
Q Consensus 175 ~l~~l~~L~~L~L 187 (316)
.+.++++++.+.+
T Consensus 53 ~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 53 AFSNCKSLESITF 65 (129)
T ss_dssp TTTT-TT-EEEEE
T ss_pred eeecccccccccc
Confidence 3334334444444
No 64
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.26 E-value=2.5e-06 Score=79.19 Aligned_cols=190 Identities=25% Similarity=0.225 Sum_probs=77.7
Q ss_pred CcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccccc----ccCCC-CCCCEEEeeCcccccc----cCccc
Q 021196 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS----SLGGL-SSLRNLSLIGNRLIGS----IDIKG 175 (316)
Q Consensus 105 L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l-~~L~~L~L~~n~l~g~----ip~~~ 175 (316)
+..+.|.+|.+...........+...+.|+.|++++|.+.+.--. .+... ..+++|++..|.+++. +.. .
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~-~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA-V 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH-H
Confidence 444455555444433333333344445555555555554422111 11111 3344444444444321 222 3
Q ss_pred ccCCCCCCEEEcCCCcCCCc----ccccccc----CCCCCCEEEcCCccccccccchhhhhcCCCCC-CCEEECCCCCCC
Q 021196 176 LDSLGNLEELDMSDNAINNL----VIPKDYR----GLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPS-LKTLYLSSTNFK 246 (316)
Q Consensus 176 l~~l~~L~~L~L~~n~~~~~----~p~~~~~----~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~-L~~L~l~~n~l~ 246 (316)
+.....++.++++.|.+... ++. .+. ...++++|++.++.++......+-..+...+. +..+++..|.+.
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~-~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQ-ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhh-hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 33344455555555544210 111 121 24455555555555542222222233344443 444555555544
Q ss_pred Cccch---hhhcCC-CCCCEEECCCCCCCcc---hhhhhhcCCCCCcEEEccCcccc
Q 021196 247 GTVVN---QELHNF-TNLEELILDDSDLHIS---QLLQSIASFTSLKYLSMGFCTLT 296 (316)
Q Consensus 247 g~~p~---~~~~~l-~~L~~L~L~~n~l~g~---~ip~~l~~~~~L~~L~l~~N~l~ 296 (316)
+..-. ..+..+ ..+++++++.|.++.. .+...+..++.++.+.+++|.+.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 22110 122222 3445555555555431 22334444455555555555544
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.24 E-value=0.00019 Score=60.02 Aligned_cols=103 Identities=27% Similarity=0.305 Sum_probs=60.2
Q ss_pred CCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCC--CCCcccccccCCCCCCCEEEeeCccccc--ccCccccc
Q 021196 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN--HFNNSIFSSLGGLSSLRNLSLIGNRLIG--SIDIKGLD 177 (316)
Q Consensus 102 l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~g--~ip~~~l~ 177 (316)
+..|+.+++.+..++... .+..+++|++|.++.| .+++.++...-.+++|++++++.|++.. +++ .+.
T Consensus 42 ~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl~ 113 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PLK 113 (260)
T ss_pred ccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hhh
Confidence 344555555555443221 2566777788888888 5555555555566888888888887642 222 345
Q ss_pred CCCCCCEEEcCCCcCCCcccc--ccccCCCCCCEEEc
Q 021196 178 SLGNLEELDMSDNAINNLVIP--KDYRGLRKLNTLYL 212 (316)
Q Consensus 178 ~l~~L~~L~L~~n~~~~~~p~--~~~~~l~~L~~L~l 212 (316)
.+.+|..|++.+|..+..--. ..|.-+++|++|+-
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 666777888887776652110 13444566666653
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=2e-05 Score=66.42 Aligned_cols=102 Identities=21% Similarity=0.259 Sum_probs=56.4
Q ss_pred CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCC
Q 021196 179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT 258 (316)
Q Consensus 179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~ 258 (316)
+.+.+.|+..++.++.. . ....++.|+.|.|+-|+++ .+ ..+..|++|++|+|..|.|..--..+.+.+++
T Consensus 18 l~~vkKLNcwg~~L~DI--s-ic~kMp~lEVLsLSvNkIs-----sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--S-ICEKMPLLEVLSLSVNKIS-----SL-APLQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccHH--H-HHHhcccceeEEeeccccc-----cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 34455666666666653 2 4456666677777766665 22 34556666677777666665222122455666
Q ss_pred CCCEEECCCCCCCcchhh----hhhcCCCCCcEEE
Q 021196 259 NLEELILDDSDLHISQLL----QSIASFTSLKYLS 289 (316)
Q Consensus 259 ~L~~L~L~~n~l~g~~ip----~~l~~~~~L~~L~ 289 (316)
+|+.|.|..|.-.|+.-+ ..+..+++|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666666666665552111 2334455555554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=2e-05 Score=66.49 Aligned_cols=68 Identities=31% Similarity=0.437 Sum_probs=31.9
Q ss_pred cCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccc
Q 021196 177 DSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVV 250 (316)
Q Consensus 177 ~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p 250 (316)
..++.|++|.|+-|+++.. . .+..+++|++|+|..|.+.+. .-...+.++++|+.|.|..|.-.|.-+
T Consensus 38 ~kMp~lEVLsLSvNkIssL--~-pl~rCtrLkElYLRkN~I~sl---dEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL--A-PLQRCTRLKELYLRKNCIESL---DELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred HhcccceeEEeeccccccc--h-hHHHHHHHHHHHHHhcccccH---HHHHHHhcCchhhhHhhccCCcccccc
Confidence 4444555555555555442 1 334455555555555555411 112234455555555555555544433
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.07 E-value=0.0038 Score=47.20 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=59.3
Q ss_pred cccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCccc
Q 021196 96 ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG 175 (316)
Q Consensus 96 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~ 175 (316)
...|...++|+.+.+.. .+.. ++. ..|.++++|+.+.+..+ +...-...|.++++++.+.+.. .+. .++...
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~-I~~---~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~ 76 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKK-IGE---NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNA 76 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--E-E-T---TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTT
T ss_pred HHHHhCCCCCCEEEECC-CeeE-eCh---hhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccc
Confidence 44577788888888874 3332 332 34788888999988775 5533344567777899999865 332 455556
Q ss_pred ccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCC
Q 021196 176 LDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG 214 (316)
Q Consensus 176 l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~ 214 (316)
+..+++|+.+++..+ +.. ++...+.+. +|+.+.+..
T Consensus 77 F~~~~~l~~i~~~~~-~~~-i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN-ITE-IGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-TTECEEEETTT--BE-EHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccCcc-ccE-EchhhhcCC-CceEEEECC
Confidence 777888888888765 433 334366665 777777765
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.20 E-value=0.0023 Score=32.30 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=9.6
Q ss_pred CcEEEccCcccccccCC
Q 021196 285 LKYLSMGFCTLTGALHG 301 (316)
Q Consensus 285 L~~L~l~~N~l~g~ip~ 301 (316)
|++||+++|+++ .||.
T Consensus 2 L~~Ldls~n~l~-~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPS 17 (22)
T ss_dssp ESEEEETSSEES-EEGT
T ss_pred ccEEECCCCcCE-eCCh
Confidence 566666666666 5554
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.09 E-value=0.0028 Score=32.02 Aligned_cols=11 Identities=45% Similarity=0.601 Sum_probs=4.4
Q ss_pred CEEEeeCcccc
Q 021196 158 RNLSLIGNRLI 168 (316)
Q Consensus 158 ~~L~L~~n~l~ 168 (316)
++|++++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444333
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.01 E-value=0.00066 Score=60.52 Aligned_cols=84 Identities=18% Similarity=0.129 Sum_probs=48.9
Q ss_pred cCCCCCCCEEECCCCCCCCccchh-hhcCCCCCCEEECCCCC-CCcchhhhhh-cCCCCCcEEEccCcccc--cccCC-C
Q 021196 229 IGSLPSLKTLYLSSTNFKGTVVNQ-ELHNFTNLEELILDDSD-LHISQLLQSI-ASFTSLKYLSMGFCTLT--GALHG-Q 302 (316)
Q Consensus 229 ~~~l~~L~~L~l~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~-l~g~~ip~~l-~~~~~L~~L~l~~N~l~--g~ip~-~ 302 (316)
-..+..|++++.++....+..+-. ...+..+|+++.+..++ |+. .--..+ .+++.|+.+++..+... +.+-. -
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd-~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD-RGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh-hhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 345667777777766543332222 23456778888887776 332 222233 35677888888877432 33444 4
Q ss_pred ccccchhhhhh
Q 021196 303 GKLRVSEAFMI 313 (316)
Q Consensus 303 ~~l~~L~~l~i 313 (316)
.+|+.|+.+.+
T Consensus 369 ~~C~~lr~lsl 379 (483)
T KOG4341|consen 369 RNCPRLRVLSL 379 (483)
T ss_pred cCCchhccCCh
Confidence 56777777654
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.93 E-value=6e-05 Score=70.15 Aligned_cols=195 Identities=24% Similarity=0.241 Sum_probs=97.6
Q ss_pred EEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCC-CCCcEEECCCCCCCcc----cccc
Q 021196 76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNS----IFSS 150 (316)
Q Consensus 76 v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~----~p~~ 150 (316)
...+.|.++.+...+... -...+.-.+.|+.|++++|.+.+..-......+... ..+++|++..|.+++. +.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~-l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEE-LAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHH-HHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 456677777664433211 122345567777788888877633222111223333 4566666666665432 4444
Q ss_pred cCCCCCCCEEEeeCcccc--cc--cCccccc----CCCCCCEEEcCCCcCCCcc---ccccccCCCC-CCEEEcCCcccc
Q 021196 151 LGGLSSLRNLSLIGNRLI--GS--IDIKGLD----SLGNLEELDMSDNAINNLV---IPKDYRGLRK-LNTLYLGGTEIA 218 (316)
Q Consensus 151 ~~~l~~L~~L~L~~n~l~--g~--ip~~~l~----~l~~L~~L~L~~n~~~~~~---p~~~~~~l~~-L~~L~l~~n~l~ 218 (316)
+.....++.++++.|.+. |. ++. .+. ...++++|.++++.++... ....+...+. +..+++..|.+.
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~-~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQ-ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhh-hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 555666777777776653 11 111 222 3556666677666655321 0112233333 445666666654
Q ss_pred ccccchhhhhcCCC-CCCCEEECCCCCCCCccch---hhhcCCCCCCEEECCCCCCCc
Q 021196 219 MIDGSKVLQSIGSL-PSLKTLYLSSTNFKGTVVN---QELHNFTNLEELILDDSDLHI 272 (316)
Q Consensus 219 ~~~~~~~p~~~~~l-~~L~~L~l~~n~l~g~~p~---~~~~~l~~L~~L~L~~n~l~g 272 (316)
+.....+.+.+..+ ..+++++++.|.++..-.. +.+..+++++.+.++.|.+..
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 22122333444444 4556666666666533221 234445566666666666543
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.62 E-value=0.007 Score=56.66 Aligned_cols=133 Identities=27% Similarity=0.229 Sum_probs=63.7
Q ss_pred CCCCCEEEeeCcccccc--cCcccccCCCCCCEEEcCCC-cCCCccc---cccccCCCCCCEEEcCCcc-ccccccchhh
Q 021196 154 LSSLRNLSLIGNRLIGS--IDIKGLDSLGNLEELDMSDN-AINNLVI---PKDYRGLRKLNTLYLGGTE-IAMIDGSKVL 226 (316)
Q Consensus 154 l~~L~~L~L~~n~l~g~--ip~~~l~~l~~L~~L~L~~n-~~~~~~p---~~~~~~l~~L~~L~l~~n~-l~~~~~~~~p 226 (316)
++.|+.+.+..+.-... +-+ ....++.|+.|+++++ ......+ ......+.+|+.++++++. +++. .+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~---~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDA-LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI---GLS 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHH-HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch---hHH
Confidence 56666666666543222 111 3455666777776652 1111111 1123344566666666666 4311 222
Q ss_pred hhcCCCCCCCEEECCCCC-CCCccchhhhcCCCCCCEEECCCCCCCc-chhhhhhcCCCCCcEEEc
Q 021196 227 QSIGSLPSLKTLYLSSTN-FKGTVVNQELHNFTNLEELILDDSDLHI-SQLLQSIASFTSLKYLSM 290 (316)
Q Consensus 227 ~~~~~l~~L~~L~l~~n~-l~g~~p~~~~~~l~~L~~L~L~~n~l~g-~~ip~~l~~~~~L~~L~l 290 (316)
.....+++|+.|.+.++. +++.--......+++|++|+++++.... ..+.....++++++.+.+
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 222236666666655554 4433333234456666666666665422 123333444555555443
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.39 E-value=0.011 Score=55.40 Aligned_cols=112 Identities=22% Similarity=0.153 Sum_probs=51.8
Q ss_pred CCCCcEEECCCCCCCcc--cccccCCCCCCCEEEeeCc-ccccccC---cccccCCCCCCEEEcCCCc-CCCcccccccc
Q 021196 130 LNNLKFLYLDYNHFNNS--IFSSLGGLSSLRNLSLIGN-RLIGSID---IKGLDSLGNLEELDMSDNA-INNLVIPKDYR 202 (316)
Q Consensus 130 l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n-~l~g~ip---~~~l~~l~~L~~L~L~~n~-~~~~~p~~~~~ 202 (316)
++.|+.+.+..+.-... .-.....++.|+.|+++++ ......+ ......+.+|+.++++++. ++..... .+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~-~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS-ALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH-HHH
Confidence 45566666555532211 2223345566666666552 1111111 1123344556666666655 4433222 222
Q ss_pred -CCCCCCEEEcCCcc-ccccccchhhhhcCCCCCCCEEECCCCCC
Q 021196 203 -GLRKLNTLYLGGTE-IAMIDGSKVLQSIGSLPSLKTLYLSSTNF 245 (316)
Q Consensus 203 -~l~~L~~L~l~~n~-l~~~~~~~~p~~~~~l~~L~~L~l~~n~l 245 (316)
.+++|+.|.+.++. +++. .+-.....+++|++|+++.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~---gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDE---GLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchh---HHHHHHHhcCcccEEeeecCcc
Confidence 25566666655554 3322 3444444555666666665543
No 75
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.05 E-value=0.038 Score=49.70 Aligned_cols=139 Identities=18% Similarity=0.153 Sum_probs=81.2
Q ss_pred CCCCCEEEeeCcccccccCcc-cccCCCCCCEEEcCCCc-CCCccccccccCCCCCCEEEcCCccccccccchhhhhcCC
Q 021196 154 LSSLRNLSLIGNRLIGSIDIK-GLDSLGNLEELDMSDNA-INNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGS 231 (316)
Q Consensus 154 l~~L~~L~L~~n~l~g~ip~~-~l~~l~~L~~L~L~~n~-~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~ 231 (316)
+..|++|+.+++...+..+-. --.+..+|+++.++.++ |+..-....-.+.+.|+.+++..+... . ..++.+.-.+
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~-~-d~tL~sls~~ 370 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI-T-DGTLASLSRN 370 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee-h-hhhHhhhccC
Confidence 445566666555432221111 12355677777777775 332211112235567777877777653 1 1145555567
Q ss_pred CCCCCEEECCCCCC-CCc--c-chhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcc
Q 021196 232 LPSLKTLYLSSTNF-KGT--V-VNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCT 294 (316)
Q Consensus 232 l~~L~~L~l~~n~l-~g~--~-p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~ 294 (316)
++.|+++.++.+.. ++. . ....-..+..|+.+.++++...-+..-+.+..+++|+.+++..++
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 88888888887753 221 0 011123467788888888886554666677788888888888875
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.66 E-value=0.048 Score=25.50 Aligned_cols=9 Identities=44% Similarity=0.530 Sum_probs=3.0
Q ss_pred CEEECCCCC
Q 021196 236 KTLYLSSTN 244 (316)
Q Consensus 236 ~~L~l~~n~ 244 (316)
+.|++++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.89 E-value=0.12 Score=26.94 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=8.6
Q ss_pred CCCEEECCCCCCCCccch
Q 021196 234 SLKTLYLSSTNFKGTVVN 251 (316)
Q Consensus 234 ~L~~L~l~~n~l~g~~p~ 251 (316)
+|+.|++++|+++ .+|.
T Consensus 3 ~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 3 NLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCEEECCCCcCC-cCCH
Confidence 4555555555554 4444
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.89 E-value=0.12 Score=26.94 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=8.6
Q ss_pred CCCEEECCCCCCCCccch
Q 021196 234 SLKTLYLSSTNFKGTVVN 251 (316)
Q Consensus 234 ~L~~L~l~~n~l~g~~p~ 251 (316)
+|+.|++++|+++ .+|.
T Consensus 3 ~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 3 NLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCEEECCCCcCC-cCCH
Confidence 4555555555554 4444
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.01 E-value=0.0023 Score=52.99 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=45.8
Q ss_pred cCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccc
Q 021196 171 IDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVV 250 (316)
Q Consensus 171 ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p 250 (316)
+|...+........||++.|++-.. -. .+..++.+..++++.|.+. .+|..++....+..+++..|..+ ..|
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r~vn~-~~-n~s~~t~~~rl~~sknq~~-----~~~~d~~q~~e~~~~~~~~n~~~-~~p 104 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNRLVNL-GK-NFSILTRLVRLDLSKNQIK-----FLPKDAKQQRETVNAASHKNNHS-QQP 104 (326)
T ss_pred cchhhhhccceeeeehhhhhHHHhh-cc-chHHHHHHHHHhccHhhHh-----hChhhHHHHHHHHHHHhhccchh-hCC
Confidence 3433444445555555555554321 11 3344445555555555554 44555555555555555555554 455
Q ss_pred hhhhcCCCCCCEEECCCCCCC
Q 021196 251 NQELHNFTNLEELILDDSDLH 271 (316)
Q Consensus 251 ~~~~~~l~~L~~L~L~~n~l~ 271 (316)
. .++..++++.+++-.|.+.
T Consensus 105 ~-s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 105 K-SQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred c-cccccCCcchhhhccCcch
Confidence 4 5555555555555555543
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.64 E-value=0.087 Score=26.94 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=6.9
Q ss_pred CCCCEEECCCCCCCc
Q 021196 258 TNLEELILDDSDLHI 272 (316)
Q Consensus 258 ~~L~~L~L~~n~l~g 272 (316)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 445555555555544
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.36 E-value=0.0032 Score=52.16 Aligned_cols=93 Identities=12% Similarity=0.081 Sum_probs=75.4
Q ss_pred cccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchh
Q 021196 196 VIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL 275 (316)
Q Consensus 196 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~i 275 (316)
+|-..+......+.||++.|.+. .+-..+..++.+..|+++.|++. ..|. .++....+..+++..|..+ ..
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r~v-----n~~~n~s~~t~~~rl~~sknq~~-~~~~-d~~q~~e~~~~~~~~n~~~--~~ 103 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNRLV-----NLGKNFSILTRLVRLDLSKNQIK-FLPK-DAKQQRETVNAASHKNNHS--QQ 103 (326)
T ss_pred cchhhhhccceeeeehhhhhHHH-----hhccchHHHHHHHHHhccHhhHh-hChh-hHHHHHHHHHHHhhccchh--hC
Confidence 44446667788899999999876 44455666678899999999986 6776 7888888889999888887 78
Q ss_pred hhhhcCCCCCcEEEccCccccc
Q 021196 276 LQSIASFTSLKYLSMGFCTLTG 297 (316)
Q Consensus 276 p~~l~~~~~L~~L~l~~N~l~g 297 (316)
|.++++.++++++++-.|.|.-
T Consensus 104 p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 104 PKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred CccccccCCcchhhhccCcchH
Confidence 9999999999999999998763
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.98 E-value=0.074 Score=43.23 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=52.2
Q ss_pred CCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhh-cCCCCCCEEECCCCC-CCcchhhhhhcCC
Q 021196 205 RKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL-HNFTNLEELILDDSD-LHISQLLQSIASF 282 (316)
Q Consensus 205 ~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~-~~l~~L~~L~L~~n~-l~g~~ip~~l~~~ 282 (316)
..++.++-++..+. . .=.+.+.+++.++.|.+.++.--+..--+.+ +-.++|+.|++++|. |+. .--..+.++
T Consensus 101 ~~IeaVDAsds~I~-~---eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~-~GL~~L~~l 175 (221)
T KOG3864|consen 101 VKIEAVDASDSSIM-Y---EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD-GGLACLLKL 175 (221)
T ss_pred ceEEEEecCCchHH-H---HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech-hHHHHHHHh
Confidence 35677777777765 3 2234566777788888877753221111112 234788888888775 665 455677788
Q ss_pred CCCcEEEccC
Q 021196 283 TSLKYLSMGF 292 (316)
Q Consensus 283 ~~L~~L~l~~ 292 (316)
++|+.|++.+
T Consensus 176 knLr~L~l~~ 185 (221)
T KOG3864|consen 176 KNLRRLHLYD 185 (221)
T ss_pred hhhHHHHhcC
Confidence 8888887764
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.28 E-value=0.13 Score=41.94 Aligned_cols=81 Identities=31% Similarity=0.358 Sum_probs=42.5
Q ss_pred CCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcC-CCCCCCEEECCCC-CCCCccchhhhcCCCC
Q 021196 182 LEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIG-SLPSLKTLYLSST-NFKGTVVNQELHNFTN 259 (316)
Q Consensus 182 L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~-~l~~L~~L~l~~n-~l~g~~p~~~~~~l~~ 259 (316)
++.+|-++..+...... .+.+++.++.|.+.++.-- ++. . .+.++ -.++|+.|++++| +||..-.. .+..+++
T Consensus 103 IeaVDAsds~I~~eGle-~L~~l~~i~~l~l~~ck~~-dD~-~-L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lkn 177 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLE-HLRDLRSIKSLSLANCKYF-DDW-C-LERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKN 177 (221)
T ss_pred EEEEecCCchHHHHHHH-HHhccchhhhheeccccch-hhH-H-HHHhcccccchheeeccCCCeechhHHH-HHHHhhh
Confidence 45555555555544333 4555556666666655433 211 1 11222 2356777777766 45533333 5666777
Q ss_pred CCEEECCC
Q 021196 260 LEELILDD 267 (316)
Q Consensus 260 L~~L~L~~ 267 (316)
|+.|++.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 77776654
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.63 E-value=1.8 Score=22.64 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=8.7
Q ss_pred CCCEEECCCCCCCCccc
Q 021196 234 SLKTLYLSSTNFKGTVV 250 (316)
Q Consensus 234 ~L~~L~l~~n~l~g~~p 250 (316)
+|+.|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4555555555555 444
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.28 E-value=2.6 Score=22.06 Aligned_cols=14 Identities=50% Similarity=0.665 Sum_probs=7.6
Q ss_pred CCCCEEECCCCCCC
Q 021196 258 TNLEELILDDSDLH 271 (316)
Q Consensus 258 ~~L~~L~L~~n~l~ 271 (316)
++|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 44555555555553
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=75.72 E-value=4.8 Score=37.28 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=11.0
Q ss_pred CCcEEEccCcccccccCC
Q 021196 284 SLKYLSMGFCTLTGALHG 301 (316)
Q Consensus 284 ~L~~L~l~~N~l~g~ip~ 301 (316)
.+++|++..|++.|+.-.
T Consensus 355 R~q~l~~rdnnldgeg~~ 372 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGA 372 (553)
T ss_pred eeeEeecccccccccccc
Confidence 466666666666665544
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.47 E-value=2.4 Score=22.53 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=10.9
Q ss_pred CCCcEEEccCcccc
Q 021196 283 TSLKYLSMGFCTLT 296 (316)
Q Consensus 283 ~~L~~L~l~~N~l~ 296 (316)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46888888888875
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.39 E-value=13 Score=35.21 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=17.1
Q ss_pred CCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCC
Q 021196 204 LRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSST 243 (316)
Q Consensus 204 l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n 243 (316)
.+.+..++|++|++..-+ .+...-...|+|..|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld--~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLD--ALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred Ccceeeeecccchhhchh--hhhHHHHhcchhheeecccc
Confidence 344555555555553110 11122223455666666666
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.00 E-value=14 Score=35.09 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=44.6
Q ss_pred CCCCCCCEEECCCCCCCCccch--hhhcCCCCCCEEECCCC--CCCcchhhhhhcC--CCCCcEEEccCccccccc
Q 021196 230 GSLPSLKTLYLSSTNFKGTVVN--QELHNFTNLEELILDDS--DLHISQLLQSIAS--FTSLKYLSMGFCTLTGAL 299 (316)
Q Consensus 230 ~~l~~L~~L~l~~n~l~g~~p~--~~~~~l~~L~~L~L~~n--~l~g~~ip~~l~~--~~~L~~L~l~~N~l~g~i 299 (316)
.+.+.+..++|++|++. .+.. ......++|..|+|++| .+.. -.++.+ ...|++|-+.+|.++...
T Consensus 215 ~n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~---~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISS---ESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcc---hhhhhhhcCCCHHHeeecCCccccch
Confidence 46778999999999875 3321 12335688999999999 4432 123333 235788999999887654
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=45.72 E-value=16 Score=41.42 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=18.3
Q ss_pred EcCCccccccccchhhh-hcCCCCCCCEEECCCCCCC
Q 021196 211 YLGGTEIAMIDGSKVLQ-SIGSLPSLKTLYLSSTNFK 246 (316)
Q Consensus 211 ~l~~n~l~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~ 246 (316)
||++|+|+ .+|. .|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-----tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-----TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-----ccChHHhccCCCceEEEeeCCccc
Confidence 35666665 4443 4555666666666666553
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=43.83 E-value=18 Score=18.54 Aligned_cols=11 Identities=36% Similarity=0.172 Sum_probs=5.4
Q ss_pred CCCcEEECCCC
Q 021196 131 NNLKFLYLDYN 141 (316)
Q Consensus 131 ~~L~~L~L~~n 141 (316)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34455555544
No 92
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=34.38 E-value=39 Score=28.17 Aligned_cols=13 Identities=15% Similarity=0.187 Sum_probs=6.7
Q ss_pred CCCEEEcCCcccc
Q 021196 206 KLNTLYLGGTEIA 218 (316)
Q Consensus 206 ~L~~L~l~~n~l~ 218 (316)
+++--.|..++|.
T Consensus 197 N~eGA~L~gcNfe 209 (302)
T KOG1665|consen 197 NAEGASLKGCNFE 209 (302)
T ss_pred ccccccccCcCCC
Confidence 4455555555553
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=32.82 E-value=26 Score=39.86 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=24.6
Q ss_pred ECCCCCCCcccccccCCCCCCCEEEeeCcccc
Q 021196 137 YLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI 168 (316)
Q Consensus 137 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 168 (316)
||++|+|+..-+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888555566778888888888888764
No 94
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=21.45 E-value=59 Score=19.66 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=12.8
Q ss_pred cHHHHHHHHHHhhhCC
Q 021196 28 LEQERYALLQLRHFFN 43 (316)
Q Consensus 28 ~~~~~~aL~~~~~~~~ 43 (316)
...|+.||++.++.+-
T Consensus 29 frqdrdallear~kl~ 44 (54)
T PF13260_consen 29 FRQDRDALLEARNKLF 44 (54)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 4679999999987764
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=21.38 E-value=83 Score=29.56 Aligned_cols=62 Identities=23% Similarity=0.059 Sum_probs=26.7
Q ss_pred CCEEEcCCCcCCCccccccccCC---CCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCC
Q 021196 182 LEELDMSDNAINNLVIPKDYRGL---RKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNF 245 (316)
Q Consensus 182 L~~L~L~~n~~~~~~p~~~~~~l---~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l 245 (316)
+.+++++.|.....+|. .+..+ ..++.++.+...+... ...-+-..+.-+.++..+++.|..
T Consensus 216 lteldls~n~~Kddip~-~~n~~a~~~vl~~ld~s~tgirlD-~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIPR-TLNKKAGTLVLFKLDRSTTGIRLD-LLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred ccccccccCCCCccchh-HHHHhhhhhhhhcccccccccchh-hcccccccccccccchhhhccCCC
Confidence 55666666665555543 22111 2344555544443311 001111222334556666665544
Done!