Query 021196
Match_columns 316
No_of_seqs 409 out of 3986
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 14:09:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2.8E-43 9.6E-48 310.9 18.4 271 26-313 2-298 (313)
2 3rgz_A Protein brassinosteroid 100.0 2.1E-38 7.2E-43 311.2 20.1 270 23-313 5-301 (768)
3 4fcg_A Uncharacterized protein 100.0 1.9E-38 6.5E-43 281.7 10.8 267 25-313 22-308 (328)
4 4eco_A Uncharacterized protein 100.0 1.1E-37 3.8E-42 300.0 12.7 250 26-301 26-394 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 2.7E-36 9.2E-41 296.8 15.0 265 24-312 263-650 (876)
6 1ogq_A PGIP-2, polygalacturona 100.0 4.6E-32 1.6E-36 239.1 13.7 185 99-298 121-307 (313)
7 3rgz_A Protein brassinosteroid 100.0 1.3E-31 4.3E-36 263.2 17.4 200 99-309 462-730 (768)
8 2z66_A Variable lymphocyte rec 100.0 5.8E-30 2E-34 224.8 16.6 239 59-313 4-255 (306)
9 3v47_A TOLL-like receptor 5B a 100.0 2.2E-29 7.6E-34 232.8 18.1 247 57-313 3-378 (455)
10 3zyi_A Leucine-rich repeat-con 100.0 7.3E-29 2.5E-33 229.4 21.0 232 64-313 56-297 (452)
11 3zyj_A Leucine-rich repeat-con 100.0 1.5E-28 5.3E-33 226.4 21.1 232 64-313 45-286 (440)
12 2z80_A TOLL-like receptor 2, v 100.0 1.9E-29 6.3E-34 226.0 13.3 239 57-313 25-308 (353)
13 2o6q_A Variable lymphocyte rec 100.0 3.5E-28 1.2E-32 209.7 20.5 220 59-300 2-222 (270)
14 1ozn_A Reticulon 4 receptor; N 100.0 1.4E-27 4.9E-32 207.4 19.4 210 74-301 32-243 (285)
15 4fcg_A Uncharacterized protein 100.0 1.2E-28 4E-33 218.7 12.3 196 101-313 79-284 (328)
16 1xku_A Decorin; proteoglycan, 100.0 2.7E-27 9.2E-32 210.0 20.4 231 58-312 27-269 (330)
17 1ozn_A Reticulon 4 receptor; N 100.0 1.4E-27 4.7E-32 207.6 17.9 218 77-313 14-232 (285)
18 3v47_A TOLL-like receptor 5B a 100.0 2.3E-27 7.7E-32 219.3 18.9 224 75-313 80-402 (455)
19 3o6n_A APL1; leucine-rich repe 99.9 1E-27 3.5E-32 217.5 14.1 133 75-218 46-178 (390)
20 2ft3_A Biglycan; proteoglycan, 99.9 3.6E-27 1.2E-31 209.4 16.7 222 59-301 30-282 (332)
21 2id5_A Lingo-1, leucine rich r 99.9 6.8E-27 2.3E-31 217.5 18.9 145 63-218 12-165 (477)
22 3oja_B Anopheles plasmodium-re 99.9 4.4E-27 1.5E-31 224.7 15.8 132 76-218 53-184 (597)
23 1wwl_A Monocyte differentiatio 99.9 3.2E-28 1.1E-32 214.4 6.6 201 101-313 93-303 (312)
24 2z81_A CD282 antigen, TOLL-lik 99.9 4.9E-27 1.7E-31 222.0 15.0 120 61-191 3-134 (549)
25 3rfs_A Internalin B, repeat mo 99.9 3.7E-26 1.3E-30 197.3 17.6 206 74-307 41-247 (272)
26 3t6q_A CD180 antigen; protein- 99.9 2.9E-26 9.8E-31 219.3 18.1 233 74-313 301-554 (606)
27 3t6q_A CD180 antigen; protein- 99.9 7.1E-26 2.4E-30 216.6 20.3 224 75-313 255-507 (606)
28 2z62_A TOLL-like receptor 4, v 99.9 6.3E-26 2.2E-30 196.1 17.5 211 74-302 28-243 (276)
29 2id5_A Lingo-1, leucine rich r 99.9 6.8E-26 2.3E-30 210.7 17.8 227 74-313 56-327 (477)
30 2z66_A Variable lymphocyte rec 99.9 3.6E-26 1.2E-30 200.6 13.7 211 74-300 52-265 (306)
31 4eco_A Uncharacterized protein 99.9 5.1E-27 1.7E-31 225.7 8.0 223 74-312 206-463 (636)
32 1ziw_A TOLL-like receptor 3; i 99.9 2E-25 6.8E-30 216.3 18.4 224 74-313 25-303 (680)
33 3m19_A Variable lymphocyte rec 99.9 3.1E-25 1.1E-29 189.2 17.3 217 60-301 3-226 (251)
34 3zyi_A Leucine-rich repeat-con 99.9 7E-25 2.4E-29 202.7 20.6 221 68-313 51-273 (452)
35 3j0a_A TOLL-like receptor 5; m 99.9 7.7E-26 2.6E-30 224.2 14.7 239 62-313 14-321 (844)
36 3zyj_A Leucine-rich repeat-con 99.9 9.3E-25 3.2E-29 201.2 20.1 216 76-313 45-262 (440)
37 2z62_A TOLL-like receptor 4, v 99.9 2.2E-25 7.5E-30 192.7 14.9 199 103-313 28-231 (276)
38 3o6n_A APL1; leucine-rich repe 99.9 9E-25 3.1E-29 198.1 19.3 219 74-312 69-324 (390)
39 2z7x_B TOLL-like receptor 1, v 99.9 2.8E-25 9.5E-30 208.8 16.4 83 230-313 321-406 (520)
40 3vq2_A TLR4, TOLL-like recepto 99.9 1.7E-25 5.9E-30 213.9 14.7 204 98-313 345-552 (606)
41 3oja_B Anopheles plasmodium-re 99.9 9E-25 3.1E-29 208.7 19.4 217 74-311 75-329 (597)
42 3vq2_A TLR4, TOLL-like recepto 99.9 3.3E-25 1.1E-29 212.0 15.5 200 74-290 32-236 (606)
43 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-25 3.6E-30 198.7 11.0 209 75-314 59-270 (317)
44 3oja_A Leucine-rich immune mol 99.9 1.6E-25 5.3E-30 208.8 12.7 213 75-313 35-269 (487)
45 1ziw_A TOLL-like receptor 3; i 99.9 8.2E-25 2.8E-29 212.0 17.9 211 96-313 398-616 (680)
46 3rfs_A Internalin B, repeat mo 99.9 2.4E-24 8.3E-29 185.9 18.6 187 99-301 37-223 (272)
47 1xku_A Decorin; proteoglycan, 99.9 2.6E-24 9E-29 190.7 18.4 214 76-313 33-247 (330)
48 1p9a_G Platelet glycoprotein I 99.9 6.5E-24 2.2E-28 184.9 20.6 200 73-297 9-209 (290)
49 2o6q_A Variable lymphocyte rec 99.9 4.7E-24 1.6E-28 183.9 19.3 196 103-313 16-212 (270)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.3E-24 4.6E-29 206.1 17.2 108 74-194 52-160 (562)
51 1wwl_A Monocyte differentiatio 99.9 1.9E-25 6.4E-30 196.7 10.4 205 74-298 95-311 (312)
52 4ecn_A Leucine-rich repeat pro 99.9 1.2E-25 3.9E-30 221.4 9.7 190 96-301 441-662 (876)
53 4glp_A Monocyte differentiatio 99.9 1.5E-25 5E-30 197.2 9.4 196 102-313 90-301 (310)
54 2z7x_B TOLL-like receptor 1, v 99.9 2.2E-24 7.5E-29 202.6 17.7 114 177-296 321-434 (520)
55 2z80_A TOLL-like receptor 2, v 99.9 4.8E-25 1.6E-29 197.3 11.9 210 73-301 75-319 (353)
56 2ast_B S-phase kinase-associat 99.9 6E-26 2E-30 201.6 5.2 211 61-293 36-257 (336)
57 1p9a_G Platelet glycoprotein I 99.9 8.7E-24 3E-28 184.1 18.3 195 99-313 6-202 (290)
58 2z63_A TOLL-like receptor 4, v 99.9 1.3E-24 4.6E-29 206.1 14.0 193 100-301 344-536 (570)
59 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.3E-24 1.5E-28 202.6 17.2 131 177-312 350-503 (562)
60 3j0a_A TOLL-like receptor 5; m 99.9 1.9E-24 6.4E-29 214.3 15.0 225 74-313 48-345 (844)
61 2xwt_C Thyrotropin receptor; s 99.9 5.2E-24 1.8E-28 180.2 14.5 190 104-311 32-231 (239)
62 4glp_A Monocyte differentiatio 99.9 9.8E-25 3.4E-29 191.9 10.2 207 75-297 92-308 (310)
63 3m19_A Variable lymphocyte rec 99.9 3.1E-23 1E-27 176.8 19.0 183 103-301 14-197 (251)
64 2ft3_A Biglycan; proteoglycan, 99.9 5.1E-24 1.7E-28 189.1 14.6 216 76-313 35-271 (332)
65 2z63_A TOLL-like receptor 4, v 99.9 6.5E-24 2.2E-28 201.4 15.0 217 75-313 305-525 (570)
66 4fmz_A Internalin; leucine ric 99.9 7.7E-23 2.6E-27 182.3 20.9 192 99-313 128-340 (347)
67 3cvr_A Invasion plasmid antige 99.9 5.3E-24 1.8E-28 200.8 11.8 207 50-306 34-254 (571)
68 1o6v_A Internalin A; bacterial 99.9 9.5E-23 3.2E-27 189.1 20.0 204 75-312 178-381 (466)
69 1h6u_A Internalin H; cell adhe 99.9 1.3E-22 4.5E-27 178.1 19.8 192 74-298 41-232 (308)
70 3oja_A Leucine-rich immune mol 99.9 1.3E-23 4.3E-28 195.9 13.5 196 100-313 31-244 (487)
71 2ca6_A RAN GTPase-activating p 99.9 6.6E-25 2.2E-29 198.8 4.2 235 75-312 33-309 (386)
72 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-22 6.1E-27 186.6 20.5 177 99-309 81-257 (457)
73 2z81_A CD282 antigen, TOLL-lik 99.9 2.7E-23 9.3E-28 196.3 15.2 220 68-312 3-229 (549)
74 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-23 5.8E-28 184.5 12.8 209 74-313 34-244 (317)
75 2o6s_A Variable lymphocyte rec 99.9 3.2E-23 1.1E-27 171.6 13.5 199 58-300 3-202 (208)
76 2xwt_C Thyrotropin receptor; s 99.9 2.2E-23 7.7E-28 176.3 12.5 197 74-293 31-236 (239)
77 1h6u_A Internalin H; cell adhe 99.9 1.3E-22 4.6E-27 178.1 17.9 188 99-313 37-224 (308)
78 4fmz_A Internalin; leucine ric 99.9 6.7E-22 2.3E-26 176.2 20.7 212 74-313 66-294 (347)
79 4ay9_X Follicle-stimulating ho 99.9 7.7E-23 2.6E-27 182.8 14.3 235 60-313 7-253 (350)
80 2ast_B S-phase kinase-associat 99.9 2.3E-23 8E-28 184.8 10.1 203 74-293 70-282 (336)
81 2o6s_A Variable lymphocyte rec 99.9 2.7E-22 9.2E-27 166.0 15.4 179 106-307 10-190 (208)
82 3bz5_A Internalin-J, INLJ; leu 99.9 4.8E-22 1.6E-26 183.7 18.0 201 74-312 85-292 (457)
83 2ca6_A RAN GTPase-activating p 99.9 8.1E-24 2.8E-28 191.6 4.2 214 98-313 27-281 (386)
84 1o6v_A Internalin A; bacterial 99.9 1.4E-21 5E-26 181.1 18.7 188 99-313 173-360 (466)
85 1h6t_A Internalin B; cell adhe 99.9 1.4E-21 4.7E-26 170.3 15.1 173 100-298 43-215 (291)
86 3goz_A Leucine-rich repeat-con 99.9 6E-23 2E-27 184.3 6.2 238 74-313 22-291 (362)
87 4g8a_A TOLL-like receptor 4; l 99.9 6.3E-22 2.2E-26 189.6 13.4 116 98-218 71-186 (635)
88 4b8c_D Glucose-repressible alc 99.9 2E-23 6.9E-28 203.1 -1.0 201 26-251 128-334 (727)
89 1m9s_A Internalin B; cell inva 99.9 9.4E-21 3.2E-25 180.3 17.0 173 100-298 40-212 (605)
90 2v70_A SLIT-2, SLIT homolog 2 99.9 1E-20 3.6E-25 157.9 15.4 153 106-272 14-167 (220)
91 3e6j_A Variable lymphocyte rec 99.9 1.6E-20 5.6E-25 157.7 16.2 158 57-246 14-172 (229)
92 4g8a_A TOLL-like receptor 4; l 99.9 8E-21 2.7E-25 181.9 15.9 205 100-313 368-574 (635)
93 3goz_A Leucine-rich repeat-con 99.9 3.5E-22 1.2E-26 179.4 5.8 224 75-300 52-301 (362)
94 1z7x_W Ribonuclease inhibitor; 99.8 1.1E-22 3.7E-27 188.1 0.1 59 254-313 337-405 (461)
95 4ezg_A Putative uncharacterize 99.8 2.6E-20 9E-25 152.8 13.7 155 128-297 41-195 (197)
96 1z7x_W Ribonuclease inhibitor; 99.8 3.4E-22 1.2E-26 184.8 2.2 193 103-298 199-413 (461)
97 1h6t_A Internalin B; cell adhe 99.8 3.5E-20 1.2E-24 161.4 14.4 183 104-313 25-207 (291)
98 1jl5_A Outer protein YOPM; leu 99.8 1.2E-19 4E-24 167.6 18.5 120 103-246 131-250 (454)
99 2xot_A Amphoterin-induced prot 99.8 4.9E-20 1.7E-24 165.3 15.5 175 78-272 22-203 (361)
100 3cvr_A Invasion plasmid antige 99.8 4.5E-20 1.6E-24 174.0 15.9 170 104-313 60-237 (571)
101 4ezg_A Putative uncharacterize 99.8 2.7E-20 9.4E-25 152.6 12.1 154 100-272 41-195 (197)
102 1jl5_A Outer protein YOPM; leu 99.8 2.5E-19 8.7E-24 165.3 19.6 183 99-313 191-403 (454)
103 2v9t_B SLIT homolog 2 protein 99.8 1E-19 3.4E-24 152.0 15.2 153 106-272 14-166 (220)
104 3e6j_A Variable lymphocyte rec 99.8 1.5E-19 5E-24 151.9 16.0 153 105-272 21-173 (229)
105 3g06_A SSPH2 (leucine-rich rep 99.8 1.7E-19 5.9E-24 172.0 17.6 69 233-312 221-290 (622)
106 2xot_A Amphoterin-induced prot 99.8 9.8E-20 3.3E-24 163.3 15.0 156 133-296 41-202 (361)
107 1m9s_A Internalin B; cell inva 99.8 9.6E-20 3.3E-24 173.4 15.8 202 74-305 43-257 (605)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 2.5E-19 8.4E-24 149.6 16.1 157 78-251 15-171 (220)
109 3g06_A SSPH2 (leucine-rich rep 99.8 1.2E-19 4E-24 173.2 15.3 86 205-305 221-307 (622)
110 1xeu_A Internalin C; cellular 99.8 2.1E-20 7.3E-25 160.3 9.1 168 104-298 20-187 (263)
111 1dce_A Protein (RAB geranylger 99.8 5.5E-23 1.9E-27 194.5 -8.4 195 100-312 346-566 (567)
112 2v9t_B SLIT homolog 2 protein 99.8 4.5E-19 1.6E-23 147.9 16.0 153 78-248 15-167 (220)
113 4ay9_X Follicle-stimulating ho 99.8 5.7E-19 1.9E-23 157.7 13.5 211 79-312 14-232 (350)
114 4b8c_D Glucose-repressible alc 99.8 1.1E-19 3.8E-24 176.8 3.7 181 103-301 173-359 (727)
115 1xeu_A Internalin C; cellular 99.8 5.3E-18 1.8E-22 145.3 12.4 150 99-272 37-186 (263)
116 2ell_A Acidic leucine-rich nuc 99.8 2.7E-18 9.2E-23 137.0 9.4 131 131-270 24-159 (168)
117 1w8a_A SLIT protein; signaling 99.8 6.5E-18 2.2E-22 137.9 11.9 133 134-276 11-143 (192)
118 2ell_A Acidic leucine-rich nuc 99.7 6.7E-18 2.3E-22 134.7 10.5 138 101-251 22-164 (168)
119 1w8a_A SLIT protein; signaling 99.7 1.5E-17 5.1E-22 135.7 12.7 136 106-254 11-147 (192)
120 2je0_A Acidic leucine-rich nuc 99.7 1E-17 3.5E-22 130.8 9.7 82 132-217 18-100 (149)
121 2je0_A Acidic leucine-rich nuc 99.7 2E-17 6.8E-22 129.2 10.2 128 154-291 16-148 (149)
122 3ogk_B Coronatine-insensitive 99.7 1.7E-18 5.8E-23 164.9 0.3 140 153-298 376-528 (592)
123 2wfh_A SLIT homolog 2 protein 99.7 4E-16 1.4E-20 127.3 13.3 107 132-246 32-139 (193)
124 2o6r_A Variable lymphocyte rec 99.7 4.1E-16 1.4E-20 125.3 12.8 133 133-276 9-141 (177)
125 2o6r_A Variable lymphocyte rec 99.7 8.8E-16 3E-20 123.4 14.3 132 105-250 9-141 (177)
126 3ogk_B Coronatine-insensitive 99.7 9.5E-18 3.2E-22 159.7 2.9 131 178-313 291-443 (592)
127 1dce_A Protein (RAB geranylger 99.7 1.5E-18 5E-23 164.2 -3.5 177 96-290 365-567 (567)
128 1ds9_A Outer arm dynein; leuci 99.7 3.8E-19 1.3E-23 145.9 -6.6 151 131-296 18-185 (198)
129 2wfh_A SLIT homolog 2 protein 99.7 8.9E-16 3E-20 125.3 12.7 129 133-272 12-140 (193)
130 1a9n_A U2A', U2A'; complex (nu 99.7 3.2E-16 1.1E-20 125.9 9.2 133 127-271 15-153 (176)
131 1a9n_A U2A', U2A'; complex (nu 99.6 3.1E-16 1.1E-20 126.0 8.0 134 150-297 14-154 (176)
132 1ds9_A Outer arm dynein; leuci 99.6 1.8E-18 6.2E-23 141.9 -8.2 160 99-272 14-186 (198)
133 3sb4_A Hypothetical leucine ri 99.6 1.3E-15 4.5E-20 134.6 9.4 197 102-312 48-327 (329)
134 2p1m_B Transport inhibitor res 99.6 7E-17 2.4E-21 153.7 -2.5 205 101-313 287-513 (594)
135 3un9_A NLR family member X1; l 99.6 4.1E-16 1.4E-20 140.0 1.6 194 102-298 71-285 (372)
136 3un9_A NLR family member X1; l 99.6 6.1E-16 2.1E-20 138.9 2.5 114 131-246 126-252 (372)
137 2p1m_B Transport inhibitor res 99.6 1.3E-16 4.4E-21 151.9 -2.1 107 102-213 129-243 (594)
138 3g39_A Variable lymphocyte rec 99.5 5.5E-14 1.9E-18 112.2 10.3 106 156-272 10-116 (170)
139 3sb4_A Hypothetical leucine ri 99.5 3.8E-14 1.3E-18 125.2 9.9 202 74-290 49-328 (329)
140 2r9u_A Variable lymphocyte rec 99.5 1.2E-13 4.2E-18 110.6 10.4 105 157-272 14-119 (174)
141 3g39_A Variable lymphocyte rec 99.5 2.7E-13 9.1E-18 108.2 11.7 105 105-218 11-115 (170)
142 2r9u_A Variable lymphocyte rec 99.5 3.1E-13 1.1E-17 108.2 11.1 104 106-218 15-118 (174)
143 2ifg_A High affinity nerve gro 99.3 4E-12 1.4E-16 112.9 9.4 91 99-195 27-118 (347)
144 4fdw_A Leucine rich hypothetic 99.3 4.3E-11 1.5E-15 108.3 16.0 193 97-305 174-368 (401)
145 2ifg_A High affinity nerve gro 99.3 1.3E-11 4.4E-16 109.6 10.3 104 106-218 11-116 (347)
146 4fdw_A Leucine rich hypothetic 99.3 1.3E-10 4.3E-15 105.3 15.7 171 126-313 175-352 (401)
147 2ra8_A Uncharacterized protein 99.2 3E-11 1E-15 107.7 6.5 210 73-294 106-341 (362)
148 2ra8_A Uncharacterized protein 99.1 5.4E-11 1.8E-15 106.1 7.1 166 127-298 135-322 (362)
149 1io0_A Tropomodulin; LRR prote 99.0 7.3E-10 2.5E-14 89.3 6.2 122 175-296 31-164 (185)
150 3rw6_A Nuclear RNA export fact 98.9 7.4E-11 2.5E-15 100.3 -1.0 86 152-240 167-258 (267)
151 1io0_A Tropomodulin; LRR prote 98.9 9.9E-10 3.4E-14 88.6 4.0 68 204-271 92-164 (185)
152 3rw6_A Nuclear RNA export fact 98.7 4.9E-09 1.7E-13 89.0 1.9 83 203-289 168-257 (267)
153 4fs7_A Uncharacterized protein 98.6 1.1E-06 3.7E-11 79.2 14.2 101 199-311 291-393 (394)
154 4gt6_A Cell surface protein; l 98.5 3.2E-06 1.1E-10 76.1 15.0 19 95-113 79-97 (394)
155 4fs7_A Uncharacterized protein 98.4 4.6E-06 1.6E-10 75.1 12.9 208 75-313 163-373 (394)
156 4gt6_A Cell surface protein; l 98.3 2.1E-05 7.3E-10 70.7 16.2 124 175-313 260-385 (394)
157 3e4g_A ATP synthase subunit S, 98.2 7.2E-07 2.5E-11 70.5 2.5 34 104-141 62-95 (176)
158 3e4g_A ATP synthase subunit S, 98.1 2.9E-06 9.9E-11 67.0 4.6 84 180-269 61-150 (176)
159 1pgv_A TMD-1, tropomodulin TMD 98.0 1.1E-05 3.6E-10 65.0 6.6 96 200-295 65-169 (197)
160 4h09_A Hypothetical leucine ri 98.0 0.00023 7.7E-09 63.4 15.2 129 151-293 213-343 (379)
161 4h09_A Hypothetical leucine ri 97.9 0.00022 7.6E-09 63.5 14.7 142 127-283 213-356 (379)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 2.7E-05 9.4E-10 62.6 4.8 67 204-270 97-169 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0016 5.5E-08 48.6 6.0 33 157-190 33-65 (130)
164 3rfe_A Platelet glycoprotein I 96.9 0.0017 5.9E-08 48.5 5.7 37 234-271 32-68 (130)
165 2lz0_A Uncharacterized protein 36.2 63 0.0021 22.0 4.8 13 175-187 38-50 (100)
166 3ox7_P MH027; urokinase-type p 29.3 17 0.00058 16.9 0.6 11 58-68 4-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.8e-43 Score=310.90 Aligned_cols=271 Identities=23% Similarity=0.343 Sum_probs=200.7
Q ss_pred CCcHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCCCc--ccceEEcCCC--CcEEEEEcCCCCcccccccccccccccC
Q 021196 26 GCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQ--WERVECNDTT--GRVIKLDLRDTRNWESAEWYMNASLFTP 101 (316)
Q Consensus 26 ~~~~~~~~aL~~~~~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~l~L~~~~~~~~~~~~~~~~~~~~ 101 (316)
.|.++|++||++||+++.+|. .+++| ..+.+||. |.||+|+... ++|+.|+|+++.+.+.... +..+.+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W---~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~---~~~l~~ 74 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI---PSSLAN 74 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTC---CTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC---CGGGGG
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCC---CCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc---ChhHhC
Confidence 699999999999999998876 78899 45678998 9999998644 8999999999988431021 345677
Q ss_pred CCCCcEEEccC-CccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCC
Q 021196 102 FQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG 180 (316)
Q Consensus 102 l~~L~~L~L~~-n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~ 180 (316)
+++|++|++++ |.+.+.+|.. ++++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|. .+..++
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~ 149 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLP 149 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCT
T ss_pred CCCCCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcCC
Confidence 77788888874 7777776653 66666777777777766666666666666666666666666666665 566666
Q ss_pred CCCEEEcCCCcCCCccccccccCCC-CCCEEEcCCcccccccc--------------------chhhhhcCCCCCCCEEE
Q 021196 181 NLEELDMSDNAINNLVIPKDYRGLR-KLNTLYLGGTEIAMIDG--------------------SKVLQSIGSLPSLKTLY 239 (316)
Q Consensus 181 ~L~~L~L~~n~~~~~~p~~~~~~l~-~L~~L~l~~n~l~~~~~--------------------~~~p~~~~~l~~L~~L~ 239 (316)
+|++|++++|++++.+|. .+..++ +|++|++++|.++ +.. ..+|..+..+++|++|+
T Consensus 150 ~L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N~l~-~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 227 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLT-GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227 (313)
T ss_dssp TCCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEE-EECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred CCCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCCeee-ccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence 666666666666665555 555555 5566655555554 200 04556677777888888
Q ss_pred CCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196 240 LSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI 313 (316)
Q Consensus 240 l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i 313 (316)
+++|.+++.+| .+..+++|++|++++|.+++ .+|..+..+++|++|++++|+++|.+|..+.++.|+.+++
T Consensus 228 L~~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l 298 (313)
T 1ogq_A 228 LAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298 (313)
T ss_dssp CCSSEECCBGG--GCCCCTTCCEEECCSSCCEE-CCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGT
T ss_pred CCCCceeeecC--cccccCCCCEEECcCCcccC-cCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHh
Confidence 88888876555 36778889999999999988 8898999999999999999999999998888888888765
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-38 Score=311.23 Aligned_cols=270 Identities=23% Similarity=0.278 Sum_probs=201.6
Q ss_pred ccCCCcHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCCCcccceEEcCCCCcEEEEEcCCCCcccccc-cc--------
Q 021196 23 WSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAE-WY-------- 93 (316)
Q Consensus 23 ~~~~~~~~~~~aL~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~-~~-------- 93 (316)
+++.+.++|++||++||+++.+|. .+++| ..+.+||+|.||+|+ .++|++|+|+++.+.+.-. ..
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W---~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~ 78 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKN-LLPDW---SSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTG 78 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTT-SSTTC---CTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTT
T ss_pred ccccCCHHHHHHHHHHHhhCCCcc-cccCC---CCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCc
Confidence 445667899999999999999988 89999 457899999999998 6899999999987742100 10
Q ss_pred ------------cccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccccccc-CCCCCCCEE
Q 021196 94 ------------MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL-GGLSSLRNL 160 (316)
Q Consensus 94 ------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L 160 (316)
..++.++.+++|++|+|++|.+.|.+|.. ..++++++|++|++++|.+.+.+|..+ .++++|++|
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence 01145677777777888777777766641 136777778888887777777777665 677778888
Q ss_pred EeeCcccccccCccc---ccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCE
Q 021196 161 SLIGNRLIGSIDIKG---LDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT 237 (316)
Q Consensus 161 ~L~~n~l~g~ip~~~---l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~ 237 (316)
++++|.+++..|. . +.++++|++|++++|.+++..+ +..+++|++|++++|.++ + .+|. ++++++|++
T Consensus 157 ~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~-~---~~~~-l~~l~~L~~ 227 (768)
T 3rgz_A 157 DLSANSISGANVV-GWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFS-T---GIPF-LGDCSALQH 227 (768)
T ss_dssp ECCSSCCEEETHH-HHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCC-S---CCCB-CTTCCSCCE
T ss_pred ECCCCccCCcCCh-hhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCC-C---CCcc-cccCCCCCE
Confidence 8887777766554 3 6777778888888887776543 367778888888888887 4 4454 788888888
Q ss_pred EECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Ccc-ccchhhhhh
Q 021196 238 LYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGK-LRVSEAFMI 313 (316)
Q Consensus 238 L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~-l~~L~~l~i 313 (316)
|++++|.+++.+|. .+..+++|++|++++|.+++ .+|.. .+++|++|++++|+++|.+|. ++. +++|++|++
T Consensus 228 L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~-~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 228 LDISGNKLSGDFSR-AISTCTELKLLNISSNQFVG-PIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301 (768)
T ss_dssp EECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEE-SCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred EECcCCcCCCcccH-HHhcCCCCCEEECCCCcccC-ccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence 88888888877776 78888888888888888877 66654 778888888888888888887 544 488887765
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.9e-38 Score=281.70 Aligned_cols=267 Identities=19% Similarity=0.228 Sum_probs=233.0
Q ss_pred CCCcHHHHHHHHHHhhhCC-CCCCCCCCCCC-CCCCCCCCcccceEEcC--------CCCcEEEEEcCCCCccccccccc
Q 021196 25 EGCLEQERYALLQLRHFFN-DDQCLQNCWVD-DENYSDCCQWERVECND--------TTGRVIKLDLRDTRNWESAEWYM 94 (316)
Q Consensus 25 ~~~~~~~~~aL~~~~~~~~-~~~~~~~~W~~-~~~~~~~c~w~gv~c~~--------~~~~v~~l~L~~~~~~~~~~~~~ 94 (316)
..+..+|++||++||+.+. ++..+...|.. .....++|.|.|+.|+. ...+|+.|+|+++.+...
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~l----- 96 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQF----- 96 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSC-----
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhc-----
Confidence 4556789999999999884 55566678831 12467899999999952 347899999999987522
Q ss_pred ccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcc
Q 021196 95 NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIK 174 (316)
Q Consensus 95 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~ 174 (316)
+..+.++++|++|++++|.+. .+|.. ++++++|++|++++|.++ .+|..++++++|++|++++|.+.+.+|.
T Consensus 97 -p~~l~~l~~L~~L~L~~n~l~-~lp~~----~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~- 168 (328)
T 4fcg_A 97 -PDQAFRLSHLQHMTIDAAGLM-ELPDT----MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE- 168 (328)
T ss_dssp -CSCGGGGTTCSEEEEESSCCC-CCCSC----GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS-
T ss_pred -ChhhhhCCCCCEEECCCCCcc-chhHH----HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh-
Confidence 334677999999999999998 67753 889999999999999999 8899999999999999999999989887
Q ss_pred ccc---------CCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCC
Q 021196 175 GLD---------SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNF 245 (316)
Q Consensus 175 ~l~---------~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l 245 (316)
.+. .+++|++|++++|.++ .+|. .+..+++|++|++++|.++ .+|+.+..+++|++|++++|.+
T Consensus 169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~-~l~~l~~L~~L~L~~N~l~-----~l~~~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 169 PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA-SIANLQNLKSLKIRNSPLS-----ALGPAIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp CSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG-GGGGCTTCCEEEEESSCCC-----CCCGGGGGCTTCCEEECTTCTT
T ss_pred hHhhccchhhhccCCCCCEEECcCCCcC-cchH-hhcCCCCCCEEEccCCCCC-----cCchhhccCCCCCEEECcCCcc
Confidence 554 4999999999999999 5777 8999999999999999998 6788899999999999999999
Q ss_pred CCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196 246 KGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 246 ~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
.+.+|. .++.+++|++|++++|++.+ .+|..+..+++|++|++++|++.|.+|. +++++.|+.+.+
T Consensus 242 ~~~~p~-~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 242 LRNYPP-IFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp CCBCCC-CTTCCCCCCEEECTTCTTCC-BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred hhhhHH-HhcCCCCCCEEECCCCCchh-hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 999987 89999999999999999998 9999999999999999999999999999 999998887653
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-37 Score=299.99 Aligned_cols=250 Identities=19% Similarity=0.276 Sum_probs=201.8
Q ss_pred CCcHHHHHHHHHHhhhCCCCCCC--------CCCCCCCCCCCCCCcc---cceEEcCCCCcEEEEEcCCCCccccccccc
Q 021196 26 GCLEQERYALLQLRHFFNDDQCL--------QNCWVDDENYSDCCQW---ERVECNDTTGRVIKLDLRDTRNWESAEWYM 94 (316)
Q Consensus 26 ~~~~~~~~aL~~~~~~~~~~~~~--------~~~W~~~~~~~~~c~w---~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~ 94 (316)
.....|++||.++|.++.++... ..+| +.+.++|.| .||+|+. .+||++|+|+++++ .|..
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W---~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l--~g~l-- 97 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANW---NFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGA--SGRV-- 97 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCC---CCSSCGGGTTCCTTEEECT-TCCEEEEECTTSCC--EEEE--
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCC---CCCCCcccccCCCCeEEcC-CCCEEEEEecCccc--CCcC--
Confidence 34467999999999999876522 2368 567899999 9999985 48999999999988 4443
Q ss_pred ccccccCCCCCcEEEccCCcc-----------------------------------------------------------
Q 021196 95 NASLFTPFQQLESLYLIGNNI----------------------------------------------------------- 115 (316)
Q Consensus 95 ~~~~~~~l~~L~~L~L~~n~~----------------------------------------------------------- 115 (316)
+..++++++|++|+|++|.+
T Consensus 98 -p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~ 176 (636)
T 4eco_A 98 -PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176 (636)
T ss_dssp -CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred -ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence 45789999999999999954
Q ss_pred -------------------CCccccccccccCCCCCCcEEECCCCCCCcc-----------------cccccC--CCCCC
Q 021196 116 -------------------AGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-----------------IFSSLG--GLSSL 157 (316)
Q Consensus 116 -------------------~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L 157 (316)
+| +| ..++++++|++|++++|.+++. +|..++ ++++|
T Consensus 177 ~~~~~~l~~l~l~~~~n~l~~-ip----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L 251 (636)
T 4eco_A 177 KSSRITLKDTQIGQLSNNITF-VS----KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251 (636)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE-EC----GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred cccccchhhhhhccccCCCcc-CC----HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC
Confidence 22 33 3488999999999999999986 999999 99999
Q ss_pred CEEEeeCcccccccCcccccCCCCCCEEEcCCCc-CCC-ccccccccCC------CCCCEEEcCCccccccccchhhh--
Q 021196 158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA-INN-LVIPKDYRGL------RKLNTLYLGGTEIAMIDGSKVLQ-- 227 (316)
Q Consensus 158 ~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~-~~~-~~p~~~~~~l------~~L~~L~l~~n~l~~~~~~~~p~-- 227 (316)
++|++++|.+.|.+|. .+.++++|++|++++|+ ++| .+|. .+..+ ++|++|++++|.++ .+|.
T Consensus 252 ~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~-----~ip~~~ 324 (636)
T 4eco_A 252 TDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLK-----TFPVET 324 (636)
T ss_dssp CEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCS-----SCCCHH
T ss_pred CEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCC-----ccCchh
Confidence 9999999999999997 89999999999999998 998 7877 67665 89999999999987 7887
Q ss_pred hcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCC-CcEEEccCcccccccCC
Q 021196 228 SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTS-LKYLSMGFCTLTGALHG 301 (316)
Q Consensus 228 ~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~-L~~L~l~~N~l~g~ip~ 301 (316)
.++++++|++|++++|+++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|+++ .+|.
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred hhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 88999999999999999988887 5666666666666666665 45666666666 666666666665 4554
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.7e-36 Score=296.75 Aligned_cols=265 Identities=17% Similarity=0.228 Sum_probs=211.7
Q ss_pred cCCCcHHHHHHHHHHhhhCCCCCCCCCCCCCCC--CCCCC--Ccc------------cceEEcCCCCcEEEEEcCCCCcc
Q 021196 24 SEGCLEQERYALLQLRHFFNDDQCLQNCWVDDE--NYSDC--CQW------------ERVECNDTTGRVIKLDLRDTRNW 87 (316)
Q Consensus 24 ~~~~~~~~~~aL~~~~~~~~~~~~~~~~W~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~l~L~~~~~~ 87 (316)
.+.+..+|++||++||+++.+| +|.... ...+| |.| .||+|+. .+||++|+|+++++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L- 335 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA- 335 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC-
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC-
Confidence 3455678999999999999876 674111 02345 999 9999985 78999999999988
Q ss_pred cccccccccccccCCCCCcEEEc-cCCccCCccccc--------------------------------------------
Q 021196 88 ESAEWYMNASLFTPFQQLESLYL-IGNNIAGCVENE-------------------------------------------- 122 (316)
Q Consensus 88 ~~~~~~~~~~~~~~l~~L~~L~L-~~n~~~~~~~~~-------------------------------------------- 122 (316)
.|.. ++.++++++|++|+| ++|.+.|..+..
T Consensus 336 -~G~i---p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 336 -KGRV---PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp -EEEE---CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred -CCcC---chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence 4443 456899999999999 888766552211
Q ss_pred ----------------------------cccccCCCCCCcEEECCCCCCCc-----------------ccccccC--CCC
Q 021196 123 ----------------------------GLDTLSRLNNLKFLYLDYNHFNN-----------------SIFSSLG--GLS 155 (316)
Q Consensus 123 ----------------------------~~~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~ 155 (316)
.+..++++++|++|+|++|.+++ .+|..++ +++
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~ 491 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred ccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence 12348889999999999999998 4899988 999
Q ss_pred CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCc-CCC-ccccccccCC-------CCCCEEEcCCccccccccchhh
Q 021196 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA-INN-LVIPKDYRGL-------RKLNTLYLGGTEIAMIDGSKVL 226 (316)
Q Consensus 156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~-~~~-~~p~~~~~~l-------~~L~~L~l~~n~l~~~~~~~~p 226 (316)
+|++|+|++|.+.+.+|. .+.++++|++|+|++|+ ++| .+|. .+..+ ++|++|++++|.++ .+|
T Consensus 492 ~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~-----~ip 564 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLE-----EFP 564 (876)
T ss_dssp TCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCC-----BCC
T ss_pred CCCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCC-----ccC
Confidence 999999999999999997 89999999999999998 888 7776 55544 48999999999987 788
Q ss_pred h--hcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCC-CcEEEccCcccccccCC-C
Q 021196 227 Q--SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTS-LKYLSMGFCTLTGALHG-Q 302 (316)
Q Consensus 227 ~--~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~-L~~L~l~~N~l~g~ip~-~ 302 (316)
. .++++++|+.|++++|.++ .+| .++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|+++ .+|. +
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~ 638 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF 638 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCC-SCCSCC
T ss_pred ChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCC-cCchhh
Confidence 7 8889999999999999888 787 6788888888888888887 67877888887 888888888877 6666 4
Q ss_pred ccccc--hhhhh
Q 021196 303 GKLRV--SEAFM 312 (316)
Q Consensus 303 ~~l~~--L~~l~ 312 (316)
+.++. |+.|+
T Consensus 639 ~~~~~~~L~~L~ 650 (876)
T 4ecn_A 639 NAKSVYVMGSVD 650 (876)
T ss_dssp CTTCSSCEEEEE
T ss_pred hccccCCCCEEE
Confidence 44432 55444
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=4.6e-32 Score=239.10 Aligned_cols=185 Identities=21% Similarity=0.277 Sum_probs=135.4
Q ss_pred ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCC-CCCEEEeeCcccccccCccccc
Q 021196 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS-SLRNLSLIGNRLIGSIDIKGLD 177 (316)
Q Consensus 99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~g~ip~~~l~ 177 (316)
+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|++++.+|. .+.
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~ 195 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPS----ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFA 195 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGG----GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGG
T ss_pred HhCCCCCCEEeCCCCccCCcCChH----HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-HHh
Confidence 444555555555555555444432 55556666666666666555666666555 566666666666555554 555
Q ss_pred CCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCC
Q 021196 178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNF 257 (316)
Q Consensus 178 ~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l 257 (316)
.++ |++|++++|.+++..|. .+..+++|++|++++|.++ + .+| .+..+++|++|++++|+++|.+|. .+..+
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~---~~~-~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l 267 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLA-F---DLG-KVGLSKNLNGLDLRNNRIYGTLPQ-GLTQL 267 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGG-GCCTTSCCSEEECCSSEEC-C---BGG-GCCCCTTCCEEECCSSCCEECCCG-GGGGC
T ss_pred CCc-ccEEECcCCcccCcCCH-HHhcCCCCCEEECCCCcee-e---ecC-cccccCCCCEEECcCCcccCcCCh-HHhcC
Confidence 554 66666666666665555 7888889999999999987 4 344 488899999999999999999987 89999
Q ss_pred CCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcc-cccc
Q 021196 258 TNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCT-LTGA 298 (316)
Q Consensus 258 ~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~-l~g~ 298 (316)
++|++|++++|+++| .+|.. ..+++|+.+++++|+ +.|.
T Consensus 268 ~~L~~L~Ls~N~l~~-~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 268 KFLHSLNVSFNNLCG-EIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp TTCCEEECCSSEEEE-ECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred cCCCEEECcCCcccc-cCCCC-ccccccChHHhcCCCCccCC
Confidence 999999999999999 88876 889999999999997 7775
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.3e-31 Score=263.15 Aligned_cols=200 Identities=24% Similarity=0.326 Sum_probs=121.6
Q ss_pred ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (316)
Q Consensus 99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~ 178 (316)
+..+++|++|++++|.+++.+|.. +.++++|++|++++|.+++.+|..++.+++|++|++++|+++|.+|. .+..
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~ 536 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGEIPSG----LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGD 536 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG-GGGG
T ss_pred HcCCCCceEEEecCCcccCcCCHH----HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH-HHcC
Confidence 344455555555555555544432 55556666666666666666666666666666666666666655555 5666
Q ss_pred CCCCCEEEcCCCcCCCcccccc----------------------------------------------------------
Q 021196 179 LGNLEELDMSDNAINNLVIPKD---------------------------------------------------------- 200 (316)
Q Consensus 179 l~~L~~L~L~~n~~~~~~p~~~---------------------------------------------------------- 200 (316)
+++|++|++++|+++|.+|...
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence 6666666666666665554311
Q ss_pred -----------ccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCC
Q 021196 201 -----------YRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSD 269 (316)
Q Consensus 201 -----------~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~ 269 (316)
+..+++|+.|++++|.++ | .+|..++++++|+.|++++|+++|.+|. .++++++|+.|||++|+
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~-g---~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLS-G---YIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSNK 691 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSSCCB-S---CCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSC
T ss_pred cceecccCchhhhccccccEEECcCCccc-c---cCCHHHhccccCCEEeCcCCccCCCCCh-HHhCCCCCCEEECCCCc
Confidence 112345666666666666 5 6666666666666666666666666665 66666667777777777
Q ss_pred CCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchh
Q 021196 270 LHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSE 309 (316)
Q Consensus 270 l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~ 309 (316)
++| .+|..+..+++|++|++++|+++|.||..+.++.+.
T Consensus 692 l~g-~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~ 730 (768)
T 3rgz_A 692 LDG-RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP 730 (768)
T ss_dssp CEE-CCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSC
T ss_pred ccC-cCChHHhCCCCCCEEECcCCcccccCCCchhhccCC
Confidence 666 666666666667777777777766666644444443
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=5.8e-30 Score=224.79 Aligned_cols=239 Identities=18% Similarity=0.223 Sum_probs=190.4
Q ss_pred CCCCcccceEEcCC---------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCcc--cccccccc
Q 021196 59 SDCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCV--ENEGLDTL 127 (316)
Q Consensus 59 ~~~c~w~gv~c~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~l 127 (316)
...|.|.+|.|+.. ..+++.|+++++.+.. ++...|.++++|++|++++|.+.... +. .+
T Consensus 4 ~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~ 74 (306)
T 2z66_A 4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-----LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ----SD 74 (306)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCEEEEEEH----HH
T ss_pred CCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCc-----cCHhHhhccccCCEEECCCCccCcccCccc----cc
Confidence 34589999999752 2478999999998753 23455788999999999999987432 32 25
Q ss_pred CCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCC
Q 021196 128 SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKL 207 (316)
Q Consensus 128 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L 207 (316)
..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+++..+. .+..+++|
T Consensus 75 ~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L 152 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSL 152 (306)
T ss_dssp HSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTC
T ss_pred ccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCC
Confidence 67899999999999987 57777888999999999999987543324788889999999999998876655 78888999
Q ss_pred CEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcE
Q 021196 208 NTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY 287 (316)
Q Consensus 208 ~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~ 287 (316)
++|++++|.++.. .+|..+..+++|++|++++|.+++..|. .+..+++|++|++++|.+++ ..+..+..+++|++
T Consensus 153 ~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 153 EVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQV 227 (306)
T ss_dssp CEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCE
T ss_pred CEEECCCCccccc---cchhHHhhCcCCCEEECCCCCcCCcCHH-HhcCCCCCCEEECCCCccCc-cChhhccCcccCCE
Confidence 9999999988722 3677888889999999999998854454 78888999999999999886 55557888899999
Q ss_pred EEccCcccccccCC-Ccccc-chhhhhh
Q 021196 288 LSMGFCTLTGALHG-QGKLR-VSEAFMI 313 (316)
Q Consensus 288 L~l~~N~l~g~ip~-~~~l~-~L~~l~i 313 (316)
|++++|++++.+|. +..++ .|+.|++
T Consensus 228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 228 LDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp EECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred eECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 99999999988887 77774 7777654
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2.2e-29 Score=232.75 Aligned_cols=247 Identities=20% Similarity=0.214 Sum_probs=143.0
Q ss_pred CCCCCCcccc--eEEcCCC--------CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccc
Q 021196 57 NYSDCCQWER--VECNDTT--------GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDT 126 (316)
Q Consensus 57 ~~~~~c~w~g--v~c~~~~--------~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 126 (316)
+....|.|.+ |.|+... .+++.|+|+++.+... .+..+.++++|++|++++|.+.+.++.. .
T Consensus 3 p~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~L~~n~~~~~i~~~---~ 74 (455)
T 3v47_A 3 PGTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAEL-----NETSFSRLQDLQFLKVEQQTPGLVIRNN---T 74 (455)
T ss_dssp ----CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEE-----CTTTTSSCTTCCEEECCCCSTTCEECTT---T
T ss_pred CccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcC-----ChhHhccCccccEEECcCCcccceECcc---c
Confidence 3455666665 8886422 5689999999987532 2344566666666666666665554432 2
Q ss_pred cCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCc-ccccCCCCCCEEEcCCCcCCCccccccccCCC
Q 021196 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI-KGLDSLGNLEELDMSDNAINNLVIPKDYRGLR 205 (316)
Q Consensus 127 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~-~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~ 205 (316)
+.++++|++|++++|.+++..|..++++++|++|++++|.+++.++. ..+..+++|++|++++|.+++..|...+..++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 55556666666666665555555555555555555555555543332 12455555555555555555543331244444
Q ss_pred CCCEEEcCCccccc---------------------------------------------------------ccc------
Q 021196 206 KLNTLYLGGTEIAM---------------------------------------------------------IDG------ 222 (316)
Q Consensus 206 ~L~~L~l~~n~l~~---------------------------------------------------------~~~------ 222 (316)
+|++|++++|.++. +..
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 44444444444330 100
Q ss_pred ------------------------------------------------------chhhhhcCCCCCCCEEECCCCCCCCc
Q 021196 223 ------------------------------------------------------SKVLQSIGSLPSLKTLYLSSTNFKGT 248 (316)
Q Consensus 223 ------------------------------------------------------~~~p~~~~~l~~L~~L~l~~n~l~g~ 248 (316)
...|..+..+++|++|++++|++++.
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 01233455666677777777777644
Q ss_pred cchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196 249 VVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 249 ~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
.|. .+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++.+|. ++.+++|++|++
T Consensus 315 ~~~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 315 DDN-AFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp CTT-TTTTCTTCCEEECCSSCCCE-ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred Chh-HhcCcccCCEEECCCCccCC-cChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 343 66777777777777777765 5566777777777777777777777666 777777777654
No 10
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=7.3e-29 Score=229.40 Aligned_cols=232 Identities=22% Similarity=0.261 Sum_probs=199.3
Q ss_pred ccceEEcCC---------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCc
Q 021196 64 WERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK 134 (316)
Q Consensus 64 w~gv~c~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~ 134 (316)
|..|.|... ..+++.|+|++|.+... .+..|.++++|++|+|++|.+.+..+. .|.++++|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMI-----QADTFRHLHHLEVLQLGRNSIRQIEVG----AFNGLASLN 126 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEE-----CTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceE-----CHHHcCCCCCCCEEECCCCccCCcChh----hccCcccCC
Confidence 567888642 24689999999987532 356688999999999999999877654 389999999
Q ss_pred EEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCC
Q 021196 135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG 214 (316)
Q Consensus 135 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~ 214 (316)
+|++++|.+++..+..+..+++|++|++++|.+. .+|...+.++++|++|++++|+..+.++...+..+++|++|++++
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 9999999999777777999999999999999998 566668999999999999997666667776899999999999999
Q ss_pred ccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcc
Q 021196 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCT 294 (316)
Q Consensus 215 n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~ 294 (316)
|.++ .+| .+..+++|++|++++|.+++..|. .+..+++|+.|++++|++++ ..|..+..+++|+.|+|++|+
T Consensus 206 n~l~-----~~~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 206 CNIK-----DMP-NLTPLVGLEELEMSGNHFPEIRPG-SFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp SCCS-----SCC-CCTTCTTCCEEECTTSCCSEECGG-GGTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSC
T ss_pred Cccc-----ccc-cccccccccEEECcCCcCcccCcc-cccCccCCCEEEeCCCcCce-ECHHHhcCCCCCCEEECCCCc
Confidence 9998 454 588899999999999999965554 89999999999999999998 778889999999999999999
Q ss_pred cccccCC-Cccccchhhhhh
Q 021196 295 LTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 295 l~g~ip~-~~~l~~L~~l~i 313 (316)
+++..+. +..+++|+.|++
T Consensus 278 l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 278 LSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp CSCCCTTSSTTCTTCCEEEC
T ss_pred CCccChHHhccccCCCEEEc
Confidence 9976666 788898888765
No 11
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=226.44 Aligned_cols=232 Identities=21% Similarity=0.240 Sum_probs=198.4
Q ss_pred ccceEEcCC---------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCc
Q 021196 64 WERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK 134 (316)
Q Consensus 64 w~gv~c~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~ 134 (316)
|..|.|... ...++.|+|++|.+... .+..|.++++|++|+|++|.+.+..+. .|.++++|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQII-----KVNSFKHLRHLEILQLSRNHIRTIEIG----AFNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEE-----CTTTTSSCSSCCEEECCSSCCCEECGG----GGTTCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCee-----CHHHhhCCCCCCEEECCCCcCCccChh----hccCCccCC
Confidence 567888642 24678899999987532 345688999999999999999876554 489999999
Q ss_pred EEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCC
Q 021196 135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG 214 (316)
Q Consensus 135 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~ 214 (316)
+|++++|.+++..+..|..+++|++|++++|.+. .++...+.++++|++|++++|+..+.++...+.++++|++|++++
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 9999999999766668999999999999999998 566668999999999999997766667766899999999999999
Q ss_pred ccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcc
Q 021196 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCT 294 (316)
Q Consensus 215 n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~ 294 (316)
|.++ .+| .+..+++|++|++++|.+++..| ..+..+++|+.|++++|++++ ..+..+..+++|+.|+|++|+
T Consensus 195 n~l~-----~~~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 195 CNLR-----EIP-NLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp SCCS-----SCC-CCTTCSSCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCE-ECTTSSTTCTTCCEEECTTSC
T ss_pred CcCc-----ccc-ccCCCcccCEEECCCCccCccCh-hhhccCccCCEEECCCCceeE-EChhhhcCCCCCCEEECCCCC
Confidence 9998 566 48889999999999999995445 489999999999999999997 778889999999999999999
Q ss_pred cccccCC-Cccccchhhhhh
Q 021196 295 LTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 295 l~g~ip~-~~~l~~L~~l~i 313 (316)
+++..+. +..+++|+.|++
T Consensus 267 l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 267 LTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp CCCCCTTTTSSCTTCCEEEC
T ss_pred CCccChhHhccccCCCEEEc
Confidence 9977666 788898888765
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.9e-29 Score=226.02 Aligned_cols=239 Identities=24% Similarity=0.301 Sum_probs=185.5
Q ss_pred CCCCCCcccceEEcCC-----------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCcccccccc
Q 021196 57 NYSDCCQWERVECNDT-----------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLD 125 (316)
Q Consensus 57 ~~~~~c~w~gv~c~~~-----------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 125 (316)
.....|.|.|+ |+.. ..+++.|+++++.+... ....+..+++|++|++++|.+++..+.
T Consensus 25 ~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~---- 94 (353)
T 2z80_A 25 QASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYI-----SNSDLQRCVNLQALVLTSNGINTIEED---- 94 (353)
T ss_dssp --CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTTSCCCEECTT----
T ss_pred ccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCccc-----CHHHhccCCCCCEEECCCCccCccCHh----
Confidence 45677888887 6532 23788999999987532 244678899999999999998876554
Q ss_pred ccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCc-ccccCCCCCCEEEcCCCc-CCCccccccccC
Q 021196 126 TLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI-KGLDSLGNLEELDMSDNA-INNLVIPKDYRG 203 (316)
Q Consensus 126 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~-~~l~~l~~L~~L~L~~n~-~~~~~p~~~~~~ 203 (316)
.+.++++|++|++++|.+++..+..+..+++|++|++++|++. .+|. ..+..+++|++|++++|. +.+ +++..+..
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~ 172 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAG 172 (353)
T ss_dssp TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTT
T ss_pred hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccc-cCHHHccC
Confidence 3888999999999999998655555889999999999999987 4564 468889999999999985 544 44447888
Q ss_pred CCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcc----------
Q 021196 204 LRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHIS---------- 273 (316)
Q Consensus 204 l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~---------- 273 (316)
+++|++|++++|.++ + ..|..+..+++|++|++++|.++ .+|...+..+++|++|++++|.+++.
T Consensus 173 l~~L~~L~l~~n~l~-~---~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 173 LTFLEELEIDASDLQ-S---YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp CCEEEEEEEEETTCC-E---ECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred CCCCCEEECCCCCcC-c---cCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccc
Confidence 999999999999887 5 55778888888888888888886 66664566678888888888877641
Q ss_pred --------------------hhhhhhcCCCCCcEEEccCcccccccCC--Cccccchhhhhh
Q 021196 274 --------------------QLLQSIASFTSLKYLSMGFCTLTGALHG--QGKLRVSEAFMI 313 (316)
Q Consensus 274 --------------------~ip~~l~~~~~L~~L~l~~N~l~g~ip~--~~~l~~L~~l~i 313 (316)
.+|..+..+++|+.|++++|+++ .+|. ++.+++|++|++
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEe
Confidence 25667788888999999999888 5565 578888887764
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=3.5e-28 Score=209.72 Aligned_cols=220 Identities=24% Similarity=0.298 Sum_probs=184.1
Q ss_pred CCCCcccceEEcCCCCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEEC
Q 021196 59 SDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL 138 (316)
Q Consensus 59 ~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L 138 (316)
.++|.|.|+.|.. ...++.++++++++...+. .+ .+++++|++++|.+.+..+. .+.++++|++|++
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~ip~------~~--~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l 68 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTAIPS------NI--PADTKKLDLQSNKLSSLPSK----AFHRLTKLRLLYL 68 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCSSCCS------CC--CTTCSEEECCSSCCSCCCTT----SSSSCTTCCEEEC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCCccCC------CC--CCCCCEEECcCCCCCeeCHH----HhcCCCCCCEEEC
Confidence 5789999999974 4457789999988754321 12 25799999999999876553 3899999999999
Q ss_pred CCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcccc
Q 021196 139 DYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218 (316)
Q Consensus 139 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~ 218 (316)
++|.++...+..|..+++|++|++++|.+.+ +|+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.++
T Consensus 69 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 69 NDNKLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPR-VFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CSSCCSCCCTTTTSSCTTCCEEECCSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCC
T ss_pred CCCccCeeChhhhcCCCCCCEEECCCCcCCc-CCHhHcccccCCCEEECCCCccCeeCHH-HhCcCcCCCEEECCCCcCC
Confidence 9999996555567899999999999999984 5655789999999999999999985544 8899999999999999998
Q ss_pred ccccchhhh-hcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccccc
Q 021196 219 MIDGSKVLQ-SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 297 (316)
Q Consensus 219 ~~~~~~~p~-~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g 297 (316)
.+|. .+..+++|++|++++|.++ .+|...+..+++|++|++++|++++ ..+..+..+++|+.|++++|.+..
T Consensus 147 -----~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 147 -----SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp -----CCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -----ccCHhHccCCcccceeEecCCcCc-EeChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCeeC
Confidence 4554 5789999999999999998 4665578999999999999999986 445568899999999999999876
Q ss_pred ccC
Q 021196 298 ALH 300 (316)
Q Consensus 298 ~ip 300 (316)
.-+
T Consensus 220 ~c~ 222 (270)
T 2o6q_A 220 TCN 222 (270)
T ss_dssp SSS
T ss_pred CCc
Confidence 654
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.4e-27 Score=207.44 Aligned_cols=210 Identities=23% Similarity=0.247 Sum_probs=175.5
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCC-CCcccccccC
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH-FNNSIFSSLG 152 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~ 152 (316)
..++.|+++++.+... .+..+..+++|++|++++|.+++..+. .+..+++|++|++++|. +....|..+.
T Consensus 32 ~~l~~L~l~~n~i~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 32 AASQRIFLHGNRISHV-----PAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp TTCSEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCceEEEeeCCcCCcc-----CHHHcccCCCCCEEECCCCccceeCHh----hcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 4688899999877432 245678899999999999998876664 38889999999999997 7766688889
Q ss_pred CCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh-hcCC
Q 021196 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ-SIGS 231 (316)
Q Consensus 153 ~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~-~~~~ 231 (316)
.+++|++|++++|.+.+..|. .+.++++|++|++++|.+++..+. .+..+++|++|++++|.++ .+|. .+..
T Consensus 103 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~ 175 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDD-TFRDLGNLTHLFLHGNRIS-----SVPERAFRG 175 (285)
T ss_dssp TCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCC-----EECTTTTTT
T ss_pred CCcCCCEEECCCCcCCEECHh-HhhCCcCCCEEECCCCcccccCHh-HhccCCCccEEECCCCccc-----ccCHHHhcC
Confidence 999999999999999865454 788999999999999999875443 7889999999999999997 4554 5888
Q ss_pred CCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC
Q 021196 232 LPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 301 (316)
Q Consensus 232 l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~ 301 (316)
+++|++|++++|.+++..|. .+..+++|+.|++++|.+++ ..+..+..+++|+.|++++|++....+.
T Consensus 176 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 176 LHSLDRLLLHQNRVAHVHPH-AFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred ccccCEEECCCCcccccCHh-HccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCccCCCCc
Confidence 99999999999999866565 88899999999999999987 6667789999999999999998866553
No 15
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.2e-28 Score=218.67 Aligned_cols=196 Identities=21% Similarity=0.226 Sum_probs=179.9
Q ss_pred CCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCC
Q 021196 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG 180 (316)
Q Consensus 101 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~ 180 (316)
..++++.|++++|.+. .+|.. +.++++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|. .+.+++
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~----l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~-~l~~l~ 150 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQ----AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPA-SIASLN 150 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSC----GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCG-GGGGCT
T ss_pred cccceeEEEccCCCch-hcChh----hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcH-HHhcCc
Confidence 3578999999999998 55643 778999999999999999 89999999999999999999998 7887 899999
Q ss_pred CCCEEEcCCCcCCCcccccccc---------CCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccch
Q 021196 181 NLEELDMSDNAINNLVIPKDYR---------GLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN 251 (316)
Q Consensus 181 ~L~~L~L~~n~~~~~~p~~~~~---------~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~ 251 (316)
+|++|++++|++.+.+|. .+. .+++|++|++++|.++ .+|..++++++|++|++++|.++ .+|.
T Consensus 151 ~L~~L~L~~n~~~~~~p~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~N~l~-~l~~ 223 (328)
T 4fcg_A 151 RLRELSIRACPELTELPE-PLASTDASGEHQGLVNLQSLRLEWTGIR-----SLPASIANLQNLKSLKIRNSPLS-ALGP 223 (328)
T ss_dssp TCCEEEEEEETTCCCCCS-CSEEEC-CCCEEESTTCCEEEEEEECCC-----CCCGGGGGCTTCCEEEEESSCCC-CCCG
T ss_pred CCCEEECCCCCCccccCh-hHhhccchhhhccCCCCCEEECcCCCcC-----cchHhhcCCCCCCEEEccCCCCC-cCch
Confidence 999999999999998887 554 4999999999999998 78889999999999999999999 5776
Q ss_pred hhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196 252 QELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 252 ~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
.+..+++|++|++++|.+.+ .+|..++.+++|++|++++|++.+.+|. ++.+++|+.|++
T Consensus 224 -~l~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 224 -AIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp -GGGGCTTCCEEECTTCTTCC-BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred -hhccCCCCCEEECcCCcchh-hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 79999999999999999998 8999999999999999999999999998 999999998876
No 16
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=2.7e-27 Score=209.96 Aligned_cols=231 Identities=21% Similarity=0.330 Sum_probs=148.6
Q ss_pred CCCCCcccceEEcCC---------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccC
Q 021196 58 YSDCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS 128 (316)
Q Consensus 58 ~~~~c~w~gv~c~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 128 (316)
....|.|..+.|+.. ...++.++++++.+.... +..+..+++|++|++++|.+++..|.. +.
T Consensus 27 ~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~ 97 (330)
T 1xku_A 27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIK-----DGDFKNLKNLHTLILINNKISKISPGA----FA 97 (330)
T ss_dssp TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBC-----TTTTTTCTTCCEEECCSSCCCCBCTTT----TT
T ss_pred CCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeC-----hhhhccCCCCCEEECCCCcCCeeCHHH----hc
Confidence 344578999999741 246888999999875432 445788999999999999998776643 88
Q ss_pred CCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCC--ccccccccCCCC
Q 021196 129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN--LVIPKDYRGLRK 206 (316)
Q Consensus 129 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~--~~p~~~~~~l~~ 206 (316)
++++|++|++++|.++ .+|..+. ++|++|++++|.+.+ +++..+.++++|++|++++|.++. ..+. .+..+++
T Consensus 98 ~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~ 172 (330)
T 1xku_A 98 PLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKK 172 (330)
T ss_dssp TCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTT-GGGGCTT
T ss_pred CCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChh-hccCCCC
Confidence 8999999999999887 5665543 678888888887764 444467777777777777777753 3333 6666667
Q ss_pred CCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCc
Q 021196 207 LNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLK 286 (316)
Q Consensus 207 L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~ 286 (316)
|++|++++|.++ .+|..+. ++|++|++++|.+++..|. .+..+++|++|++++|.+++ ..+..+..+++|+
T Consensus 173 L~~L~l~~n~l~-----~l~~~~~--~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~ 243 (330)
T 1xku_A 173 LSYIRIADTNIT-----TIPQGLP--PSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLR 243 (330)
T ss_dssp CCEEECCSSCCC-----SCCSSCC--TTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCC
T ss_pred cCEEECCCCccc-----cCCcccc--ccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCce-eChhhccCCCCCC
Confidence 777777666665 3443322 4555555555555533232 45555555555555555554 3334455555555
Q ss_pred EEEccCcccccccCC-Cccccchhhhh
Q 021196 287 YLSMGFCTLTGALHG-QGKLRVSEAFM 312 (316)
Q Consensus 287 ~L~l~~N~l~g~ip~-~~~l~~L~~l~ 312 (316)
+|++++|+++ .+|. +..++.|++|+
T Consensus 244 ~L~L~~N~l~-~lp~~l~~l~~L~~L~ 269 (330)
T 1xku_A 244 ELHLNNNKLV-KVPGGLADHKYIQVVY 269 (330)
T ss_dssp EEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred EEECCCCcCc-cCChhhccCCCcCEEE
Confidence 5555555555 3443 45555555443
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.4e-27 Score=207.56 Aligned_cols=218 Identities=19% Similarity=0.257 Sum_probs=183.6
Q ss_pred EEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCC
Q 021196 77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156 (316)
Q Consensus 77 ~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 156 (316)
+.++.+++++..... ...++|++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++
T Consensus 14 ~~~~c~~~~l~~ip~--------~~~~~l~~L~l~~n~i~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 81 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV--------GIPAASQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVLARIDAAAFTGLAL 81 (285)
T ss_dssp CEEECCSSCCSSCCT--------TCCTTCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred eEEEcCcCCcccCCc--------CCCCCceEEEeeCCcCCccCHH----HcccCCCCCEEECCCCccceeCHhhcCCccC
Confidence 455666655532211 2246899999999999876554 3899999999999999999888999999999
Q ss_pred CCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCC
Q 021196 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLK 236 (316)
Q Consensus 157 L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~ 236 (316)
|++|++++|...+.+++..+..+++|++|++++|.+++..+. .+..+++|++|++++|.++ + ..+..+..+++|+
T Consensus 82 L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-~---~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQ-A---LPDDTFRDLGNLT 156 (285)
T ss_dssp CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCC-C---CCTTTTTTCTTCC
T ss_pred CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHh-HhhCCcCCCEEECCCCccc-c---cCHhHhccCCCcc
Confidence 999999999833356545899999999999999999986555 8999999999999999998 3 2334588999999
Q ss_pred EEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196 237 TLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 237 ~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
+|++++|.++ .+|...+..+++|++|++++|.+++ ..|..+..+++|+.|++++|++++..+. +..+++|+.|++
T Consensus 157 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 157 HLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp EEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred EEECCCCccc-ccCHHHhcCccccCEEECCCCcccc-cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEec
Confidence 9999999998 5666579999999999999999998 7789999999999999999999987666 888999888765
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=2.3e-27 Score=219.29 Aligned_cols=224 Identities=21% Similarity=0.218 Sum_probs=157.2
Q ss_pred cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccc-cCC
Q 021196 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS-LGG 153 (316)
Q Consensus 75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~ 153 (316)
+++.|+++++.+.. +.+..++.+++|++|++++|.+++..+.. ..+.++++|++|++++|.+++..|.. +.+
T Consensus 80 ~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 152 (455)
T 3v47_A 80 SLIILKLDYNQFLQ-----LETGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152 (455)
T ss_dssp TCCEEECTTCTTCE-----ECTTTTTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCCCCGGGGG
T ss_pred cCCEEeCCCCccCc-----cChhhccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccCcccccCC
Confidence 44555555554421 12334566666666666666666543321 22566777777777777776665654 567
Q ss_pred CCCCCEEEeeCcccccccCcccccC----------------------------------CC-------------------
Q 021196 154 LSSLRNLSLIGNRLIGSIDIKGLDS----------------------------------LG------------------- 180 (316)
Q Consensus 154 l~~L~~L~L~~n~l~g~ip~~~l~~----------------------------------l~------------------- 180 (316)
+++|++|++++|.+.+..|. .+.. ++
T Consensus 153 l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 153 MRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp CTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred CCcccEEeCCCCcccccChh-hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh
Confidence 77777777777776654332 2211 12
Q ss_pred --------------------------------------------CCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcc
Q 021196 181 --------------------------------------------NLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTE 216 (316)
Q Consensus 181 --------------------------------------------~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~ 216 (316)
+|++|++++|.+++..|. .+..+++|++|++++|.
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~ 310 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS-VFSHFTDLEQLTLAQNE 310 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT-TTTTCTTCCEEECTTSC
T ss_pred hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh-hcccCCCCCEEECCCCc
Confidence 333444444444443343 67788899999999999
Q ss_pred ccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196 217 IAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296 (316)
Q Consensus 217 l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~ 296 (316)
++ + ..|..+..+++|++|++++|.+++..| ..+..+++|++|++++|++++ ..|..+..+++|++|++++|+++
T Consensus 311 l~-~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 311 IN-K---IDDNAFWGLTHLLKLNLSQNFLGSIDS-RMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp CC-E---ECTTTTTTCTTCCEEECCSSCCCEECG-GGGTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCS
T ss_pred cc-c---cChhHhcCcccCCEEECCCCccCCcCh-hHhcCcccCCEEECCCCcccc-cChhhccccccccEEECCCCccc
Confidence 98 4 456789999999999999999985444 489999999999999999997 77889999999999999999999
Q ss_pred cccCC-Cccccchhhhhh
Q 021196 297 GALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 297 g~ip~-~~~l~~L~~l~i 313 (316)
+..+. +..+++|+.|++
T Consensus 385 ~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 385 SVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp CCCTTTTTTCTTCCEEEC
T ss_pred cCCHhHhccCCcccEEEc
Confidence 76665 789999998875
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1e-27 Score=217.48 Aligned_cols=133 Identities=19% Similarity=0.244 Sum_probs=80.8
Q ss_pred cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (316)
Q Consensus 75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 154 (316)
.++.++++++.+.. ++...+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+++..|..++.+
T Consensus 46 ~l~~l~l~~~~l~~-----l~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 46 NQKIVTFKNSTMRK-----LPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp CCSEEEEESCEESE-----ECTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CceEEEecCCchhh-----CChhHhcccccCcEEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 45556666654432 2233355666777777777766554432 26666677777777776666556666666
Q ss_pred CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcccc
Q 021196 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218 (316)
Q Consensus 155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~ 218 (316)
++|++|++++|.+. .+|...+.++++|++|++++|.+++..+. .+..+++|++|++++|.++
T Consensus 117 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCS
T ss_pred CCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCC
Confidence 67777777776665 45543456666666666666666654333 5666666666666666654
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=3.6e-27 Score=209.36 Aligned_cols=222 Identities=25% Similarity=0.330 Sum_probs=157.6
Q ss_pred CCCCcccceEEcCC---------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCC
Q 021196 59 SDCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSR 129 (316)
Q Consensus 59 ~~~c~w~gv~c~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 129 (316)
...|.|..+.|+.. ..+++.|+++++.+... .+..+..+++|++|++++|.+++..|. .+.+
T Consensus 30 ~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~ 100 (332)
T 2ft3_A 30 GCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISEL-----RKDDFKGLQHLYALVLVNNKISKIHEK----AFSP 100 (332)
T ss_dssp SCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCSSCCCEECGG----GSTT
T ss_pred CCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCcc-----CHhHhhCCCCCcEEECCCCccCccCHh----HhhC
Confidence 34478999999742 23688999999987432 245688999999999999999877664 3889
Q ss_pred CCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCC--ccccccccCC---
Q 021196 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN--LVIPKDYRGL--- 204 (316)
Q Consensus 130 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~--~~p~~~~~~l--- 204 (316)
+++|++|++++|.++ .+|..+. ++|++|++++|++. .+|+..+..+++|++|++++|.++. ..+. .+..+
T Consensus 101 l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~L~ 175 (332)
T 2ft3_A 101 LRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-AFDGLKLN 175 (332)
T ss_dssp CTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-SSCSCCCS
T ss_pred cCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcc-cccCCccC
Confidence 999999999999988 5666554 78999999999887 4555468888999999999988863 3333 55544
Q ss_pred -----------------CCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCC
Q 021196 205 -----------------RKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD 267 (316)
Q Consensus 205 -----------------~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~ 267 (316)
++|++|++++|.++ + ..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 176 ~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~-~---~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 176 YLRISEAKLTGIPKDLPETLNELHLDHNKIQ-A---IELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDN 250 (332)
T ss_dssp CCBCCSSBCSSCCSSSCSSCSCCBCCSSCCC-C---CCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCS
T ss_pred EEECcCCCCCccCccccCCCCEEECCCCcCC-c---cCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCC
Confidence 24455555555554 2 223456666777777777777764333 3666777777777777
Q ss_pred CCCCcchhhhhhcCCCCCcEEEccCcccccccCC
Q 021196 268 SDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 301 (316)
Q Consensus 268 n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~ 301 (316)
|+++ .+|..+..+++|++|++++|++++..+.
T Consensus 251 N~l~--~lp~~l~~l~~L~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 251 NKLS--RVPAGLPDLKLLQVVYLHTNNITKVGVN 282 (332)
T ss_dssp SCCC--BCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred CcCe--ecChhhhcCccCCEEECCCCCCCccChh
Confidence 7776 5666677777777777777777654443
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=6.8e-27 Score=217.51 Aligned_cols=145 Identities=26% Similarity=0.335 Sum_probs=82.9
Q ss_pred cccceEEcCC---------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCC
Q 021196 63 QWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNL 133 (316)
Q Consensus 63 ~w~gv~c~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L 133 (316)
.|..|.|... ...++.|+|+++.+.... +..|..+++|++|+|++|.+.+..|.. |.++++|
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L 82 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLN-----QDEFASFPHLEELELNENIVSAVEPGA----FNNLFNL 82 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEEC-----TTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceEC-----HhHccCCCCCCEEECCCCccCEeChhh----hhCCccC
Confidence 3677888641 246788899888775322 345666677777777777666554432 5666666
Q ss_pred cEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcC
Q 021196 134 KFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLG 213 (316)
Q Consensus 134 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~ 213 (316)
++|++++|.+++..+..|.++++|++|++++|.+.+..|. .+..+++|++|++++|.+++..+. .+..+++|++|+++
T Consensus 83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLE 160 (477)
T ss_dssp CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEE
T ss_pred CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCccceeChh-hccCCCCCCEEECC
Confidence 6666666666543334455566666666666665543332 455555555555555555543333 44445555555554
Q ss_pred Ccccc
Q 021196 214 GTEIA 218 (316)
Q Consensus 214 ~n~l~ 218 (316)
+|.++
T Consensus 161 ~n~l~ 165 (477)
T 2id5_A 161 KCNLT 165 (477)
T ss_dssp SCCCS
T ss_pred CCcCc
Confidence 44443
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=4.4e-27 Score=224.73 Aligned_cols=132 Identities=19% Similarity=0.245 Sum_probs=82.2
Q ss_pred EEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCC
Q 021196 76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155 (316)
Q Consensus 76 v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 155 (316)
++.++++++.+.. +++..+..+++|++|++++|.+.+..+. .|+.+++|++|++++|.+++..|..|++++
T Consensus 53 l~~l~l~~~~l~~-----lp~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 53 QKIVTFKNSTMRK-----LPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp CSEEEESSCEESE-----ECTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ceEEEeeCCCCCC-----cCHHHHccCCCCcEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 3445555554421 2233455666777777777776655443 266677777777777777666666666777
Q ss_pred CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcccc
Q 021196 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218 (316)
Q Consensus 156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~ 218 (316)
+|++|+|++|.++ .+|+..+.++++|++|++++|.+++..|. .+..+++|++|++++|.++
T Consensus 124 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 124 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCS
T ss_pred CCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCC
Confidence 7777777777666 44543456667777777777776664444 5666666666666666655
No 23
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.2e-28 Score=214.38 Aligned_cols=201 Identities=18% Similarity=0.172 Sum_probs=169.0
Q ss_pred CCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC-----CCCCEEEeeCcccccccCccc
Q 021196 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL-----SSLRNLSLIGNRLIGSIDIKG 175 (316)
Q Consensus 101 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~g~ip~~~ 175 (316)
.+++|++|++++|.+++.+|...+ +..+++|++|++++|.+++. |..++.+ ++|++|++++|++.+..|. .
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~ 168 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLL--EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-Q 168 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSS--SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-T
T ss_pred CcCCccEEEccCCcccchhHHHHH--HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH-H
Confidence 589999999999999998886410 28899999999999999976 7777766 9999999999999865444 8
Q ss_pred ccCCCCCCEEEcCCCcCCCc--cccccc--cCCCCCCEEEcCCccccccccchhh-hhcCCCCCCCEEECCCCCCCCccc
Q 021196 176 LDSLGNLEELDMSDNAINNL--VIPKDY--RGLRKLNTLYLGGTEIAMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVV 250 (316)
Q Consensus 176 l~~l~~L~~L~L~~n~~~~~--~p~~~~--~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p 250 (316)
+..+++|++|++++|++.+. .+. .+ ..+++|++|++++|.++ +-. .++ ..+.++++|++|++++|++++..|
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~l~~L~~L~L~~N~l~-~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLIS-ALCPLKFPTLQVLALRNAGME-TPS-GVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHH-HSCTTSCTTCCEEECTTSCCC-CHH-HHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred hccCCCCCEEECCCCCcCcchHHHH-HHHhccCCCCCEEECCCCcCc-chH-HHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 99999999999999998875 233 33 88999999999999997 211 233 345688999999999999998776
Q ss_pred hhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196 251 NQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI 313 (316)
Q Consensus 251 ~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i 313 (316)
...+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |.+..+++|++|++
T Consensus 246 ~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L 303 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSL 303 (312)
T ss_dssp CSCCCCCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEEC
T ss_pred hhhhhhcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEec
Confidence 546777899999999999998 6888776 8999999999999977 66889999998875
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=4.9e-27 Score=222.02 Aligned_cols=120 Identities=26% Similarity=0.318 Sum_probs=71.8
Q ss_pred CCcccceEEcCC-----------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCC
Q 021196 61 CCQWERVECNDT-----------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSR 129 (316)
Q Consensus 61 ~c~w~gv~c~~~-----------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 129 (316)
.|.|.|+ |+.. ..+++.|+++++.+.... +..+..+++|++|++++|.+++..|.. +.+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~ 72 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIG-----HGDLRACANLQVLILKSSRINTIEGDA----FYS 72 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEEC-----SSTTSSCTTCCEEECTTSCCCEECTTT----TTT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccC-----hhhhhcCCcccEEECCCCCcCccChhh----ccc
Confidence 4889888 8632 237899999999874322 344566667777777777666554432 556
Q ss_pred CCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCccccc-ccCcccccCCCCCCEEEcCCCc
Q 021196 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG-SIDIKGLDSLGNLEELDMSDNA 191 (316)
Q Consensus 130 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g-~ip~~~l~~l~~L~~L~L~~n~ 191 (316)
+++|++|++++|.+++..|..++++++|++|++++|.+.+ .+|. .+.++++|++|++++|.
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESS
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCc
Confidence 6666666666666665555555566666666666665543 1232 44555555555555554
No 25
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=3.7e-26 Score=197.27 Aligned_cols=206 Identities=21% Similarity=0.261 Sum_probs=173.6
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 153 (316)
.+++.++++++.+.. ...+..+++|++|++++|.+.+. + .+..+++|++|++++|.+++..+..+..
T Consensus 41 ~~L~~L~l~~~~i~~-------~~~l~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 107 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS-------VQGIQYLPNVRYLALGGNKLHDI-S-----ALKELTNLTYLILTGNQLQSLPNGVFDK 107 (272)
T ss_dssp TTCCEEECTTSCCCC-------CTTGGGCTTCCEEECTTSCCCCC-G-----GGTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred cceeeeeeCCCCccc-------ccccccCCCCcEEECCCCCCCCc-h-----hhcCCCCCCEEECCCCccCccChhHhcC
Confidence 468889999887643 23467899999999999999873 3 3889999999999999999877777899
Q ss_pred CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCC
Q 021196 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLP 233 (316)
Q Consensus 154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~ 233 (316)
+++|++|++++|++++ +++..+..+++|++|++++|.+++..+. .+..+++|++|++++|.++ + ..+..+..++
T Consensus 108 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-~---~~~~~~~~l~ 181 (272)
T 3rfs_A 108 LTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKG-VFDKLTNLTELDLSYNQLQ-S---LPEGVFDKLT 181 (272)
T ss_dssp CTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCC-C---CCTTTTTTCT
T ss_pred CcCCCEEECCCCcCCc-cCHHHhccCCCCCEEECCCCccCccCHH-HhccCccCCEEECCCCCcC-c---cCHHHhcCCc
Confidence 9999999999999985 4544789999999999999999975444 7889999999999999998 4 3345578999
Q ss_pred CCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccc
Q 021196 234 SLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRV 307 (316)
Q Consensus 234 ~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~ 307 (316)
+|++|++++|++++..| ..+..+++|+.|++++|.+.+ . +++|+.++++.|+++|.+|. ++.++.
T Consensus 182 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~-~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 182 QLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDC-T-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCC-C-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCCccc-c-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 99999999999996444 478999999999999999987 4 45789999999999999998 776654
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=2.9e-26 Score=219.32 Aligned_cols=233 Identities=18% Similarity=0.179 Sum_probs=153.8
Q ss_pred CcEEEEEcCCCCccccccc--------------------ccccccccCCCCCcEEEccCCccCCccccccccccCCCCCC
Q 021196 74 GRVIKLDLRDTRNWESAEW--------------------YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNL 133 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~--------------------~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L 133 (316)
.+++.++++++.+....+. .+....+..+++|++|++++|.+.+..+. ...+..+++|
T Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~~l~~L 378 (606)
T 3t6q_A 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC--NLQLRNLSHL 378 (606)
T ss_dssp TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES--TTTTTTCTTC
T ss_pred ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc--chhcccCCCC
Confidence 4677888888776432110 01122345555666666666655543310 0125666777
Q ss_pred cEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcC
Q 021196 134 KFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLG 213 (316)
Q Consensus 134 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~ 213 (316)
++|++++|.+.+..|..+..+++|++|++++|.+.+..|...+..+++|++|++++|.+++..|. .+..+++|++|+++
T Consensus 379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~ 457 (606)
T 3t6q_A 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ-LFDGLPALQHLNLQ 457 (606)
T ss_dssp CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT-TTTTCTTCCEEECT
T ss_pred CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH-HHhCCCCCCEEECC
Confidence 77777777776666666777777777777777776655544467777777777777777765555 67777777777777
Q ss_pred CccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCc
Q 021196 214 GTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFC 293 (316)
Q Consensus 214 ~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N 293 (316)
+|.++ +.....+..+..+++|++|++++|++++..|. .+..+++|++|++++|++++ ..|..+..+++| +|++++|
T Consensus 458 ~n~l~-~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 458 GNHFP-KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH-AFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp TCBCG-GGEECSSCGGGGCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCG-GGGGGGTTCCSC-EEECCSS
T ss_pred CCCCC-ccccccchhhccCCCccEEECCCCccCccChh-hhccccCCCEEECCCCccCc-CChhHhCccccc-EEECcCC
Confidence 77776 21111224567777788888888887754444 77778888888888888887 777788888888 8888888
Q ss_pred ccccccCC-Cccccchhhhhh
Q 021196 294 TLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 294 ~l~g~ip~-~~~l~~L~~l~i 313 (316)
++++.+|. ++.+++|+.|++
T Consensus 534 ~l~~~~~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 534 HISIILPSLLPILSQQRTINL 554 (606)
T ss_dssp CCCCCCGGGHHHHHTSSEEEC
T ss_pred cccccCHhhcccCCCCCEEeC
Confidence 88877776 677777776654
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=7.1e-26 Score=216.59 Aligned_cols=224 Identities=24% Similarity=0.304 Sum_probs=125.1
Q ss_pred cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (316)
Q Consensus 75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 154 (316)
.++.++++++.+... .+..|..+++|++|++++|.++ .+|.. +.++++|++|++++|.+.+..|..+..+
T Consensus 255 ~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~-~lp~~----l~~l~~L~~L~l~~n~l~~~~~~~~~~l 324 (606)
T 3t6q_A 255 SVESINLQKHYFFNI-----SSNTFHCFSGLQELDLTATHLS-ELPSG----LVGLSTLKKLVLSANKFENLCQISASNF 324 (606)
T ss_dssp EEEEEECTTCCCSSC-----CTTTTTTCTTCSEEECTTSCCS-CCCSS----CCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred ceeEEEeecCccCcc-----CHHHhccccCCCEEeccCCccC-CCChh----hcccccCCEEECccCCcCcCchhhhhcc
Confidence 577777777766432 2334566666666666666665 33332 5566666666666666665555555556
Q ss_pred CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCcc--cc-----------------------ccccCCCCCCE
Q 021196 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLV--IP-----------------------KDYRGLRKLNT 209 (316)
Q Consensus 155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~--p~-----------------------~~~~~l~~L~~ 209 (316)
++|++|++++|.+.+.+|...+..+++|++|++++|.+++.. +. ..+..+++|++
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 666666666665555555434555555555555555554432 22 14444445555
Q ss_pred EEcCCccccccccchhh-hhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhh--hhhcCCCCCc
Q 021196 210 LYLGGTEIAMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL--QSIASFTSLK 286 (316)
Q Consensus 210 L~l~~n~l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip--~~l~~~~~L~ 286 (316)
|++++|.++ + ..+ ..+..+++|++|++++|.+++..|. .+..+++|++|++++|++++..+| ..+..+++|+
T Consensus 405 L~l~~n~l~-~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 405 LDLAFTRLK-V---KDAQSPFQNLHLLKVLNLSHSLLDISSEQ-LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp EECTTCCEE-C---CTTCCTTTTCTTCCEEECTTCCCBTTCTT-TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred EECCCCcCC-C---cccchhhhCcccCCEEECCCCccCCcCHH-HHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence 555555444 2 222 2245555566666666655544443 555666666666666666542222 3456666666
Q ss_pred EEEccCcccccccCC-Cccccchhhhhh
Q 021196 287 YLSMGFCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 287 ~L~l~~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
+|++++|++++.+|. ++.++.|+.|++
T Consensus 480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCccChhhhccccCCCEEEC
Confidence 666666666666655 666666666554
No 28
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=6.3e-26 Score=196.13 Aligned_cols=211 Identities=21% Similarity=0.209 Sum_probs=172.9
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 153 (316)
..++.|+++++.+...+ +..+..+++|++|++++|.+.+..+. .+.++++|++|++++|.+++..+..+.+
T Consensus 28 ~~l~~L~ls~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG-----SYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECTTCCCCEEC-----TTTTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CCccEEECCCCcccccC-----HhHhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCccChhhhcC
Confidence 35899999999875433 34678899999999999998865553 3889999999999999999888888999
Q ss_pred CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCc-cccccccCCCCCCEEEcCCccccccccchhhhhcCCC
Q 021196 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSL 232 (316)
Q Consensus 154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~-~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l 232 (316)
+++|++|++++|.+.+. +...+..+++|++|++++|.+++. +|. .+..+++|++|++++|.++ + ..+..+..+
T Consensus 99 l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l~-~---~~~~~~~~l 172 (276)
T 2z62_A 99 LSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQ-S---IYCTDLRVL 172 (276)
T ss_dssp CTTCCEEECTTSCCCCS-TTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCC-E---ECGGGGHHH
T ss_pred CccccEEECCCCCcccc-CchhcccCCCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCCC-c---CCHHHhhhh
Confidence 99999999999999854 444789999999999999999874 466 8999999999999999998 3 223445444
Q ss_pred CCCC----EEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCC
Q 021196 233 PSLK----TLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQ 302 (316)
Q Consensus 233 ~~L~----~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~ 302 (316)
++|+ .|++++|.++ .++. ......+|++|++++|.+++ ..+..+..+++|+.|++++|++++..|.+
T Consensus 173 ~~L~~l~l~L~ls~n~l~-~~~~-~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMN-FIQP-GAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp HTCTTCCEEEECCSSCCC-EECT-TSSCSCCEEEEECCSSCCSC-CCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred hhccccceeeecCCCccc-ccCc-cccCCCcccEEECCCCceee-cCHhHhcccccccEEEccCCcccccCCch
Confidence 4555 8999999998 5665 34445689999999999986 44556789999999999999999877653
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=6.8e-26 Score=210.75 Aligned_cols=227 Identities=20% Similarity=0.176 Sum_probs=123.3
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 153 (316)
.+++.|+|+++.+... .+..|.++++|++|+|++|.+.+..+. .|.++++|++|++++|.+.+..+..+..
T Consensus 56 ~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 126 (477)
T 2id5_A 56 PHLEELELNENIVSAV-----EPGAFNNLFNLRTLGLRSNRLKLIPLG----VFTGLSNLTKLDISENKIVILLDYMFQD 126 (477)
T ss_dssp TTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCCSCCTT----SSTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CCCCEEECCCCccCEe-----ChhhhhCCccCCEEECCCCcCCccCcc----cccCCCCCCEEECCCCccccCChhHccc
Confidence 3566677776655322 133445555555555555555433222 1444555555555555554444444444
Q ss_pred CCCCCEEEeeCcccccc-----------------------cCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEE
Q 021196 154 LSSLRNLSLIGNRLIGS-----------------------IDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTL 210 (316)
Q Consensus 154 l~~L~~L~L~~n~l~g~-----------------------ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L 210 (316)
+++|++|++++|.+.+. +|...+.++++|+.|++++|.+.+..+. .+..+++|++|
T Consensus 127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L 205 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY-SFKRLYRLKVL 205 (477)
T ss_dssp CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT-CSCSCTTCCEE
T ss_pred cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh-hcccCccccee
Confidence 44444444444444422 3333445555555555555555443222 44444444444
Q ss_pred EcCCccccccc--------------------cchhh-hhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCC
Q 021196 211 YLGGTEIAMID--------------------GSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSD 269 (316)
Q Consensus 211 ~l~~n~l~~~~--------------------~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~ 269 (316)
++++|.+. +. -..+| ..+..+++|+.|++++|.++ .++...+..+++|++|++++|+
T Consensus 206 ~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 206 EISHWPYL-DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp EEECCTTC-CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSC
T ss_pred eCCCCccc-cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCc
Confidence 44443322 10 00223 34566667777777777766 3444466677777777777777
Q ss_pred CCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196 270 LHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 270 l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
+++ ..|..+..+++|+.|++++|++++..+. +..+++|+.|++
T Consensus 284 l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 284 LAV-VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp CSE-ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cce-ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 776 5566777777777777777777765554 667777776654
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=3.6e-26 Score=200.57 Aligned_cols=211 Identities=19% Similarity=0.173 Sum_probs=178.5
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccc-cccC
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIF-SSLG 152 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~ 152 (316)
.+++.|+++++.+...+.. +..+..+++|++|++++|.+.+ +|. .+..+++|++|++++|.+++..+ ..+.
T Consensus 52 ~~L~~L~L~~n~l~~~~~~---~~~~~~~~~L~~L~Ls~n~i~~-l~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 123 (306)
T 2z66_A 52 TQLTKLSLSSNGLSFKGCC---SQSDFGTTSLKYLDLSFNGVIT-MSS----NFLGLEQLEHLDFQHSNLKQMSEFSVFL 123 (306)
T ss_dssp TTCSEEECCSSCCCEEEEE---EHHHHSCSCCCEEECCSCSEEE-EEE----EEETCTTCCEEECTTSEEESSTTTTTTT
T ss_pred ccCCEEECCCCccCcccCc---ccccccccccCEEECCCCcccc-Chh----hcCCCCCCCEEECCCCcccccccchhhh
Confidence 5789999999987543321 2334568999999999999875 343 37889999999999999986544 5788
Q ss_pred CCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCC-ccccccccCCCCCCEEEcCCccccccccchhhhhcCC
Q 021196 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN-LVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGS 231 (316)
Q Consensus 153 ~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~-~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~ 231 (316)
.+++|++|++++|.+.+..+. .+..+++|++|++++|.+++ ..|. .+..+++|++|++++|.++ + ..|..+..
T Consensus 124 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~-~---~~~~~~~~ 197 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLE-Q---LSPTAFNS 197 (306)
T ss_dssp TCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCC-E---ECTTTTTT
T ss_pred hccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCccccccchh-HHhhCcCCCEEECCCCCcC-C---cCHHHhcC
Confidence 999999999999999876665 88999999999999999987 4555 8999999999999999998 4 44678899
Q ss_pred CCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCC-CCcEEEccCcccccccC
Q 021196 232 LPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFT-SLKYLSMGFCTLTGALH 300 (316)
Q Consensus 232 l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~-~L~~L~l~~N~l~g~ip 300 (316)
+++|++|++++|.+++ ++...+..+++|++|++++|++++ ..|..+..++ +|++|++++|++++..+
T Consensus 198 l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCCB-CSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCcc-cCHHHHHhhhccCCEEEccCCCeecccC
Confidence 9999999999999985 444478899999999999999998 8888898884 99999999999987654
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=5.1e-27 Score=225.74 Aligned_cols=223 Identities=9% Similarity=0.122 Sum_probs=153.0
Q ss_pred CcEEEEEcCCCCccccc---ccc---------ccccccc--CCCCCcEEEccCCccCCccccccccccCCCCCCcEEECC
Q 021196 74 GRVIKLDLRDTRNWESA---EWY---------MNASLFT--PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLD 139 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~---~~~---------~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~ 139 (316)
.+++.|+|++|.+.+.+ .|. .-+..++ ++++|++|++++|.+.+.+|.. ++++++|++|+++
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls 281 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLINVA 281 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT----TTTCSSCCEEECT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH----HhcCCCCCEEECc
Confidence 57889999999875410 000 0245567 8999999999999999988864 8899999999999
Q ss_pred CCC-CCc-ccccccCCC------CCCCEEEeeCcccccccCc-ccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEE
Q 021196 140 YNH-FNN-SIFSSLGGL------SSLRNLSLIGNRLIGSIDI-KGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTL 210 (316)
Q Consensus 140 ~n~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~g~ip~-~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L 210 (316)
+|. ++| .+|..++.+ ++|++|++++|+++ .+|. ..+.++++|++|++++|.++|.+| .+..+++|++|
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L 358 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASL 358 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEE
Confidence 998 888 888887776 88888888888888 6774 257888888888888888887766 56666677777
Q ss_pred EcCCccccccccchhhhhcCCCCC-CCEEECCCCCCCCccchhhhcCCC--CCCEEECCCCCCCcchhhhhhc-------
Q 021196 211 YLGGTEIAMIDGSKVLQSIGSLPS-LKTLYLSSTNFKGTVVNQELHNFT--NLEELILDDSDLHISQLLQSIA------- 280 (316)
Q Consensus 211 ~l~~n~l~~~~~~~~p~~~~~l~~-L~~L~l~~n~l~g~~p~~~~~~l~--~L~~L~L~~n~l~g~~ip~~l~------- 280 (316)
++++|.++ .+|..+..+++ |++|++++|.++ .+|. .+..++ +|++|++++|.+++ .+|..+.
T Consensus 359 ~L~~N~l~-----~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~-~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 359 NLAYNQIT-----EIPANFCGFTEQVENLSFAHNKLK-YIPN-IFDAKSVSVMSAIDFSYNEIGS-VDGKNFDPLDPTPF 430 (636)
T ss_dssp ECCSSEEE-----ECCTTSEEECTTCCEEECCSSCCS-SCCS-CCCTTCSSCEEEEECCSSCTTT-TTTCSSCTTCSSCC
T ss_pred ECCCCccc-----cccHhhhhhcccCcEEEccCCcCc-ccch-hhhhcccCccCEEECcCCcCCC-cchhhhcccccccc
Confidence 77777665 56666666666 666666666666 5554 444333 55566666666555 5555444
Q ss_pred CCCCCcEEEccCcccccccCC--Cccccchhhhh
Q 021196 281 SFTSLKYLSMGFCTLTGALHG--QGKLRVSEAFM 312 (316)
Q Consensus 281 ~~~~L~~L~l~~N~l~g~ip~--~~~l~~L~~l~ 312 (316)
.+++|++|++++|+++ .+|. +..+++|++|+
T Consensus 431 ~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 431 KGINVSSINLSNNQIS-KFPKELFSTGSPLSSIN 463 (636)
T ss_dssp CCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEE
T ss_pred cCCCCCEEECcCCccC-cCCHHHHccCCCCCEEE
Confidence 4445555555555555 3333 23344444443
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=2e-25 Score=216.30 Aligned_cols=224 Identities=23% Similarity=0.215 Sum_probs=163.9
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 153 (316)
.+++.|+++++.+... .+..|.++++|++|++++|.+++..|. .++++++|++|++++|.+++..+..|++
T Consensus 25 ~~l~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRL-----PAANFTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp TTCSEEECCSSCCCCC-----CGGGGGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCCCCCCc-----CHHHHhCCCcCcEEECCCCccCccCHH----HHhcccCcCEEECCCCccCccChhhhcc
Confidence 5799999999987532 244578889999999999998887664 3788889999999999888554456888
Q ss_pred CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhc--CC
Q 021196 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI--GS 231 (316)
Q Consensus 154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~--~~ 231 (316)
+++|++|++++|++.+ +++..+.++++|++|++++|.+++..|. .+.++++|++|++++|.++ + ..+..+ ..
T Consensus 96 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~-~---~~~~~~~~~~ 169 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQ-A---LKSEELDIFA 169 (680)
T ss_dssp CTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCC-C---BCHHHHGGGT
T ss_pred CCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCccc-c---cCHHHhhccc
Confidence 8999999999988874 4444788888999999999988886655 7888888888888888887 3 233333 24
Q ss_pred CCCCCEEECCCCCCCCccch--------------------------------------------------hhhcCCC--C
Q 021196 232 LPSLKTLYLSSTNFKGTVVN--------------------------------------------------QELHNFT--N 259 (316)
Q Consensus 232 l~~L~~L~l~~n~l~g~~p~--------------------------------------------------~~~~~l~--~ 259 (316)
+++|++|++++|.+++..|. ..+..++ +
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp TCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSC
T ss_pred cccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCC
Confidence 46677777777766643332 1233332 3
Q ss_pred CCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196 260 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 260 L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
|++|++++|.+++ ..|..++.+++|++|++++|++++.+|. ++.+++|+.|++
T Consensus 250 L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (680)
T 1ziw_A 250 LTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303 (680)
T ss_dssp CCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCCcCc-cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEec
Confidence 7777777777776 5566677777777777777777777666 777777776654
No 33
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=3.1e-25 Score=189.22 Aligned_cols=217 Identities=23% Similarity=0.290 Sum_probs=167.8
Q ss_pred CCCcccceEEcCCCCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECC
Q 021196 60 DCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLD 139 (316)
Q Consensus 60 ~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~ 139 (316)
+||.|.|.+|.. ..+.++++++++...+. .+ .++++.|++++|.+.+..+. .+.++++|++|+++
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~~p~------~~--~~~l~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~ 67 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDSVPS------GI--PADTEKLDLQSTGLATLSDA----TFRGLTKLTWLNLD 67 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSSCCS------CC--CTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCccccCC------CC--CCCCCEEEccCCCcCccCHh----HhcCcccCCEEECC
Confidence 578999999953 34468888887754322 12 25899999999999887764 38899999999999
Q ss_pred CCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccc
Q 021196 140 YNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAM 219 (316)
Q Consensus 140 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~ 219 (316)
+|.+++..+..+..+++|++|++++|++++ +|+..+..+++|++|++++|++++. ++..+..+++|++|++++|.++
T Consensus 68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~- 144 (251)
T 3m19_A 68 YNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQ- 144 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-
T ss_pred CCcCCccCHhHhccCCcCCEEECCCCcccc-cChhHhcccCCCCEEEcCCCcCCCc-ChhHhccCCcccEEECcCCcCC-
Confidence 999998888889999999999999999984 5555889999999999999999975 4437889999999999999998
Q ss_pred cccchhhh-hcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcch------hhhhhcCCCCCcEEEccC
Q 021196 220 IDGSKVLQ-SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQ------LLQSIASFTSLKYLSMGF 292 (316)
Q Consensus 220 ~~~~~~p~-~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~------ip~~l~~~~~L~~L~l~~ 292 (316)
.+|. .+..+++|++|++++|++++ +|...+..+++|+.|++++|.+++ . ++.++... ..+..+..+
T Consensus 145 ----~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c-~~~~~~~l~~~~~~~-~~~~~~~~~ 217 (251)
T 3m19_A 145 ----SIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDC-SRCEILYLSQWIREN-SNKVKDGTG 217 (251)
T ss_dssp ----CCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCT-TSTTHHHHHHHHHHS-GGGBCC---
T ss_pred ----ccCHHHcCcCcCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCceeC-CccccHHHHHHHHhc-ccceeeccC
Confidence 4554 78899999999999999994 555588999999999999999987 4 34444322 223344556
Q ss_pred cccccccCC
Q 021196 293 CTLTGALHG 301 (316)
Q Consensus 293 N~l~g~ip~ 301 (316)
+.+.+..+.
T Consensus 218 ~~~~~~~~~ 226 (251)
T 3m19_A 218 QNLHESPDG 226 (251)
T ss_dssp ----CCGGG
T ss_pred cccccCCCc
Confidence 666655443
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=7e-25 Score=202.69 Aligned_cols=221 Identities=23% Similarity=0.239 Sum_probs=186.1
Q ss_pred EEcCCCCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccc
Q 021196 68 ECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI 147 (316)
Q Consensus 68 ~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 147 (316)
.|.. ....++.++.++...+. .+ .+++++|+|++|.+.+..+. .|.++++|++|++++|.+++..
T Consensus 51 ~C~~---~~~~v~c~~~~l~~iP~------~~--~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~ 115 (452)
T 3zyi_A 51 SCSN---QFSKVVCTRRGLSEVPQ------GI--PSNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRNSIRQIE 115 (452)
T ss_dssp EECS---SSCEEECCSSCCSSCCS------CC--CTTCSEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEEC
T ss_pred EECC---CCcEEEECCCCcCccCC------CC--CCCccEEECcCCcCceECHH----HcCCCCCCCEEECCCCccCCcC
Confidence 5643 23456777766543221 12 26899999999999887665 3899999999999999999888
Q ss_pred ccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh
Q 021196 148 FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ 227 (316)
Q Consensus 148 p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~ 227 (316)
+..|.++++|++|+|++|+++ .+|+..+..+++|++|+|++|+++. +++..+..+++|++|++++|+.. + .++.
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l-~---~i~~ 189 (452)
T 3zyi_A 116 VGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKL-E---YISE 189 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTC-C---EECT
T ss_pred hhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCCCCCc-c---ccCh
Confidence 899999999999999999998 5666579999999999999999997 45548999999999999995443 3 5554
Q ss_pred -hcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccc
Q 021196 228 -SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKL 305 (316)
Q Consensus 228 -~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l 305 (316)
.+..+++|++|++++|+++ .+| .+..+++|++|++++|.+++ ..|..+..+++|+.|++++|++++..|. +..+
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGMCNIK-DMP--NLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp TTTTTCTTCCEEECTTSCCS-SCC--CCTTCTTCCEEECTTSCCSE-ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhccCCCCCCEEECCCCccc-ccc--cccccccccEEECcCCcCcc-cCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 6889999999999999998 565 57889999999999999998 7789999999999999999999988887 8999
Q ss_pred cchhhhhh
Q 021196 306 RVSEAFMI 313 (316)
Q Consensus 306 ~~L~~l~i 313 (316)
++|+.|++
T Consensus 266 ~~L~~L~L 273 (452)
T 3zyi_A 266 ASLVELNL 273 (452)
T ss_dssp TTCCEEEC
T ss_pred CCCCEEEC
Confidence 99998875
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=7.7e-26 Score=224.21 Aligned_cols=239 Identities=18% Similarity=0.191 Sum_probs=183.8
Q ss_pred CcccceEEcCCCCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCC
Q 021196 62 CQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN 141 (316)
Q Consensus 62 c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n 141 (316)
|.|..|.+ ...+++.|+|++|.+... .+..|.++++|++|++++|...+.+++ ..|.++++|++|+|++|
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i-----~~~~~~~l~~L~~LdLs~n~~~~~i~~---~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTV-----TASSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSS 83 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEE-----CSSSCSSCCSCSEEEECTTCCCCEECT---TTTSSCTTCCEEECTTC
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCcc-----ChhHCcccccCeEEeCCCCCCccccCH---HHhcCCCCCCEEECCCC
Confidence 45666766 457899999999987432 355688899999999999977777744 24889999999999999
Q ss_pred CCCcccccccCCCCCCCEEEeeCcccccccCc-ccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcccccc
Q 021196 142 HFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI-KGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMI 220 (316)
Q Consensus 142 ~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~-~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~ 220 (316)
.+.+..|..|+++++|++|+|++|.+++.+|. ..+.++++|++|++++|.+++..++..+.++++|++|++++|.++ +
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~-~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-L 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC-C
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC-e
Confidence 99988899999999999999999999876664 238889999999999999988666447889999999999998886 3
Q ss_pred c-cch----------------------hhhhcCCCCC------CCEEECCCCCCCCccchhhhc----------------
Q 021196 221 D-GSK----------------------VLQSIGSLPS------LKTLYLSSTNFKGTVVNQELH---------------- 255 (316)
Q Consensus 221 ~-~~~----------------------~p~~~~~l~~------L~~L~l~~n~l~g~~p~~~~~---------------- 255 (316)
. ... .|..++.+++ |+.|++++|.+++.++. .+.
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG-NFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS-GGGGTSCSCCBSEEECCSS
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH-HHHhhcCcccccceecccc
Confidence 1 101 1112222222 78888888877665553 221
Q ss_pred --------------------C--CCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhh
Q 021196 256 --------------------N--FTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFM 312 (316)
Q Consensus 256 --------------------~--l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~ 312 (316)
. .++|+.|++++|.+.+ ..|..+..+++|+.|++++|++++..|. ++.+++|++|+
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence 1 2578889999998887 6677888899999999999999888777 88888888876
Q ss_pred h
Q 021196 313 I 313 (316)
Q Consensus 313 i 313 (316)
+
T Consensus 321 L 321 (844)
T 3j0a_A 321 L 321 (844)
T ss_dssp E
T ss_pred C
Confidence 5
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=9.3e-25 Score=201.16 Aligned_cols=216 Identities=22% Similarity=0.242 Sum_probs=184.3
Q ss_pred EEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCC
Q 021196 76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155 (316)
Q Consensus 76 v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 155 (316)
...++..+.++...+. .+ .++++.|+|++|.+.+..+. .|.++++|++|++++|.+++..+..|.+++
T Consensus 45 ~~~v~c~~~~l~~iP~------~~--~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~ 112 (440)
T 3zyj_A 45 FSKVICVRKNLREVPD------GI--STNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIRTIEIGAFNGLA 112 (440)
T ss_dssp SCEEECCSCCCSSCCS------CC--CTTCSEEECCSCCCCEECTT----TTSSCSSCCEEECCSSCCCEECGGGGTTCS
T ss_pred CCEEEeCCCCcCcCCC------CC--CCCCcEEEccCCcCCeeCHH----HhhCCCCCCEEECCCCcCCccChhhccCCc
Confidence 3467777776643322 12 36899999999999877664 389999999999999999988888999999
Q ss_pred CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh-hcCCCCC
Q 021196 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ-SIGSLPS 234 (316)
Q Consensus 156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~-~~~~l~~ 234 (316)
+|++|+|++|+++ .+|+..+..+++|++|++++|.++.. ++..+..+++|++|++++|+.. + .++. .+.++++
T Consensus 113 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l-~---~i~~~~~~~l~~ 186 (440)
T 3zyj_A 113 NLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRL-S---YISEGAFEGLSN 186 (440)
T ss_dssp SCCEEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTC-C---EECTTTTTTCSS
T ss_pred cCCEEECCCCcCC-eeCHhHhhccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCCCc-c---eeCcchhhcccc
Confidence 9999999999998 56665799999999999999999974 4448999999999999996544 3 4544 6889999
Q ss_pred CCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196 235 LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 235 L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
|++|++++|.++ .+| .+..+++|++|++++|++++ ..|..+..+++|+.|++++|++++..|. +..+++|+.|++
T Consensus 187 L~~L~L~~n~l~-~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 187 LRYLNLAMCNLR-EIP--NLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp CCEEECTTSCCS-SCC--CCTTCSSCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEEC
T ss_pred cCeecCCCCcCc-ccc--ccCCCcccCEEECCCCccCc-cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEEC
Confidence 999999999998 677 47889999999999999997 7788999999999999999999988887 899999998875
No 37
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.2e-25 Score=192.71 Aligned_cols=199 Identities=19% Similarity=0.183 Sum_probs=168.5
Q ss_pred CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCC
Q 021196 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL 182 (316)
Q Consensus 103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L 182 (316)
++|++|++++|.+++..+. .+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ ..+.++++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTCCCCEECTT----TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTC
T ss_pred CCccEEECCCCcccccCHh----HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccc
Confidence 4799999999999876653 38899999999999999997777789999999999999999985444 489999999
Q ss_pred CEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCC-
Q 021196 183 EELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLE- 261 (316)
Q Consensus 183 ~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~- 261 (316)
++|++++|.+++..+. .+..+++|++|++++|.++.. .+|..+.++++|++|++++|++++ ++...+..+++|+
T Consensus 103 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~---~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 103 QKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPL 177 (276)
T ss_dssp CEEECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTT
T ss_pred cEEECCCCCccccCch-hcccCCCCCEEECcCCcccee---cCchhhccCCCCCEEECCCCCCCc-CCHHHhhhhhhccc
Confidence 9999999999986554 789999999999999999733 468899999999999999999984 4444666666666
Q ss_pred ---EEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196 262 ---ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 262 ---~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
.|++++|.+++ ++.......+|+.|++++|++++..+. ++.+++|+.|++
T Consensus 178 l~l~L~ls~n~l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 178 LNLSLDLSLNPMNF--IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp CCEEEECCSSCCCE--ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred cceeeecCCCcccc--cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 89999999985 555555566899999999999976666 788998888765
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=9e-25 Score=198.10 Aligned_cols=219 Identities=20% Similarity=0.203 Sum_probs=129.0
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 153 (316)
.+++.++++++.+... .+..+..+++|++|++++|.+.+..|. .+.++++|++|++++|.++...+..+..
T Consensus 69 ~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 139 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEI-----DTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHN 139 (390)
T ss_dssp CCCSEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCcEEECCCCccccc-----ChhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcC
Confidence 4678888988876432 244577888888888888888776554 3777888888888888887433334577
Q ss_pred CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCC-----------------------------
Q 021196 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGL----------------------------- 204 (316)
Q Consensus 154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l----------------------------- 204 (316)
+++|++|++++|.+.+..| ..+..+++|++|++++|.+++.... .+..+
T Consensus 140 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLS-LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 217 (390)
T ss_dssp CTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBCCGG-GCTTCSEEECCSSCCSEEECCSSCSEEECCSSCC
T ss_pred CCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCccccc-cccccceeecccccccccCCCCcceEEECCCCee
Confidence 8888888888888775433 3677788888888888877653111 11111
Q ss_pred --------CCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhh
Q 021196 205 --------RKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL 276 (316)
Q Consensus 205 --------~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip 276 (316)
++|+.|++++|.++ + + +.+..+++|++|++++|.+++..|. .+..+++|++|++++|++++ +|
T Consensus 218 ~~~~~~~~~~L~~L~l~~n~l~-~----~-~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~--~~ 288 (390)
T 3o6n_A 218 NVVRGPVNVELTILKLQHNNLT-D----T-AWLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVA--LN 288 (390)
T ss_dssp CEEECCCCSSCCEEECCSSCCC-C----C-GGGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECCSSCCCE--EE
T ss_pred eeccccccccccEEECCCCCCc-c----c-HHHcCCCCccEEECCCCcCCCcChh-HccccccCCEEECCCCcCcc--cC
Confidence 13333444444433 1 1 2344555555666665555543333 55555555555555555542 44
Q ss_pred hhhcCCCCCcEEEccCcccccccCCCccccchhhhh
Q 021196 277 QSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFM 312 (316)
Q Consensus 277 ~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~ 312 (316)
..+..+++|++|++++|++++..+.++.++.|+.|+
T Consensus 289 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 289 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 324 (390)
T ss_dssp CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEE
T ss_pred cccCCCCCCCEEECCCCcceecCccccccCcCCEEE
Confidence 444455555555555555543222244444444443
No 39
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=2.8e-25 Score=208.75 Aligned_cols=83 Identities=18% Similarity=0.200 Sum_probs=56.8
Q ss_pred CCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCc-chhhhhhcCCCCCcEEEccCcccccccCC--Ccccc
Q 021196 230 GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHI-SQLLQSIASFTSLKYLSMGFCTLTGALHG--QGKLR 306 (316)
Q Consensus 230 ~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g-~~ip~~l~~~~~L~~L~l~~N~l~g~ip~--~~~l~ 306 (316)
..+++|++|++++|.+++.+|. .+..+++|++|++++|++++ ..+|..+..+++|++|++++|++++.+|. +..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 4566777777777777766665 67777777777777777764 13456677777777777777777775664 55666
Q ss_pred chhhhhh
Q 021196 307 VSEAFMI 313 (316)
Q Consensus 307 ~L~~l~i 313 (316)
.|+.|++
T Consensus 400 ~L~~L~L 406 (520)
T 2z7x_B 400 SLLSLNM 406 (520)
T ss_dssp TCCEEEC
T ss_pred cCCEEEC
Confidence 6665543
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=1.7e-25 Score=213.91 Aligned_cols=204 Identities=20% Similarity=0.180 Sum_probs=152.7
Q ss_pred cccCCCCCcEEEccCCccCCcc--ccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCccc
Q 021196 98 LFTPFQQLESLYLIGNNIAGCV--ENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG 175 (316)
Q Consensus 98 ~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~ 175 (316)
.+..+++|++|++++|.+++.. +. .+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+..|...
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~----~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSY----SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCH----HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred hhccCCCCCEEECcCCccCCCcchhh----hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhh
Confidence 3456777788888877776552 32 36677888888888887763 56777788888888888888876665346
Q ss_pred ccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhc
Q 021196 176 LDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELH 255 (316)
Q Consensus 176 l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~ 255 (316)
+..+++|++|++++|.+++..|. .+..+++|++|++++|.++ +. .+|..++.+++|++|++++|++++..|. .+.
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~ 494 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFK-DN--TLSNVFANTTNLTFLDLSKCQLEQISWG-VFD 494 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEG-GG--EECSCCTTCTTCCEEECTTSCCCEECTT-TTT
T ss_pred hhccccCCEEECcCCCCCccchh-hhcCCCCCCEEECCCCcCC-Cc--chHHhhccCCCCCEEECCCCcCCccChh-hhc
Confidence 77888888888888888876665 7788888888888888876 30 2566778888888888888888855554 778
Q ss_pred CCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Ccccc-chhhhhh
Q 021196 256 NFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLR-VSEAFMI 313 (316)
Q Consensus 256 ~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~-~L~~l~i 313 (316)
.+++|++|++++|++++ .+|..+..+++|++|++++|+++ .+|. +..++ +|+.|++
T Consensus 495 ~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l 552 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNL 552 (606)
T ss_dssp TCTTCCEEECCSSCCSC-EEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEEC
T ss_pred ccccCCEEECCCCcCCC-cCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEc
Confidence 88888888888888887 67888888888888888888887 4555 66665 4666654
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=9e-25 Score=208.71 Aligned_cols=217 Identities=20% Similarity=0.201 Sum_probs=134.2
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 153 (316)
.+++.|+|+++.+... .+..|+.+++|++|+|++|.+++..|. .|+++++|++|++++|.+++..+..|++
T Consensus 75 ~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 145 (597)
T 3oja_B 75 RQVELLNLNDLQIEEI-----DTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHN 145 (597)
T ss_dssp CCCSEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCCCCCCC-----ChHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence 3688899999887432 244678889999999999998886664 3788889999999999888555555688
Q ss_pred CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCC-----------------------------
Q 021196 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGL----------------------------- 204 (316)
Q Consensus 154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l----------------------------- 204 (316)
+++|++|++++|.+++..|. .+..+++|++|++++|.+++..+. .+..+
T Consensus 146 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~-~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l 223 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHVDLS-LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 223 (597)
T ss_dssp CTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBCCGG-GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCC
T ss_pred CCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCcChh-hhhhhhhhhcccCccccccCCchhheeeccCCcc
Confidence 88999999999988865554 788888888888888887763211 11111
Q ss_pred --------CCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhh
Q 021196 205 --------RKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL 276 (316)
Q Consensus 205 --------~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip 276 (316)
++|+.|++++|.++ + +..+..+++|+.|++++|.+++..|. .+..+++|+.|+|++|.+++ +|
T Consensus 224 ~~~~~~~~~~L~~L~L~~n~l~-~-----~~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~--l~ 294 (597)
T 3oja_B 224 NVVRGPVNVELTILKLQHNNLT-D-----TAWLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVA--LN 294 (597)
T ss_dssp CEEECSCCSCCCEEECCSSCCC-C-----CGGGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECTTSCCCE--EE
T ss_pred cccccccCCCCCEEECCCCCCC-C-----ChhhccCCCCCEEECCCCccCCCCHH-HhcCccCCCEEECCCCCCCC--CC
Confidence 12333333333333 1 12344555555555555555544343 45555555555555555543 34
Q ss_pred hhhcCCCCCcEEEccCcccccccCC-Cccccchhhh
Q 021196 277 QSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAF 311 (316)
Q Consensus 277 ~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l 311 (316)
..+..+++|+.|+|++|++++ +|. ++.++.|+.|
T Consensus 295 ~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L 329 (597)
T 3oja_B 295 LYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENL 329 (597)
T ss_dssp CSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEE
T ss_pred cccccCCCCcEEECCCCCCCc-cCcccccCCCCCEE
Confidence 444445555555555555542 332 4444444444
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=3.3e-25 Score=211.99 Aligned_cols=200 Identities=20% Similarity=0.196 Sum_probs=157.3
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 153 (316)
.+++.|+++++.+... .+..|.++++|++|++++|.+++..|. .|.++++|++|++++|.+++..|..|++
T Consensus 32 ~~l~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~i~~~----~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKIL-----KSYSFSNFSELQWLDLSRCEIETIEDK----AWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp TTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCcCEEECCCCCcCEe-----ChhhccCCccCcEEeCCCCcccccCHH----HhhchhhcCEeECCCCcccccChhhcCC
Confidence 5789999999987432 345688999999999999999877664 3899999999999999999888999999
Q ss_pred CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCC-ccccccccCCCCCCEEEcCCccccccccchhhhhcCCC
Q 021196 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN-LVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSL 232 (316)
Q Consensus 154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~-~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l 232 (316)
+++|++|++++|.+.+ +++..++++++|++|++++|.+++ .+|. .+.++++|++|++++|.++ + ..|..++.+
T Consensus 103 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~-~---~~~~~~~~l 176 (606)
T 3vq2_A 103 LTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQ-T---ITVNDLQFL 176 (606)
T ss_dssp CTTCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCC-E---ECTTTTHHH
T ss_pred cccCCEEEccCCcccc-ccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCCcce-e---cChhhhhhh
Confidence 9999999999999985 443479999999999999999986 4566 8999999999999999998 4 334445544
Q ss_pred CC----CCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEc
Q 021196 233 PS----LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 290 (316)
Q Consensus 233 ~~----L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l 290 (316)
++ +.++++++|.++ .++...+. ..+|++|++++|.+++..+|..+.++++|+.+++
T Consensus 177 ~~L~~~l~~L~l~~n~l~-~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l 236 (606)
T 3vq2_A 177 RENPQVNLSLDMSLNPID-FIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236 (606)
T ss_dssp HHCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEE
T ss_pred hccccccceeeccCCCcc-eeCccccc-CceeeeeeccCCccchhHHHHHhccccccccccc
Confidence 44 448999999887 56653444 3478888888887764355555555554444433
No 43
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-25 Score=198.68 Aligned_cols=209 Identities=18% Similarity=0.140 Sum_probs=149.1
Q ss_pred cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (316)
Q Consensus 75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 154 (316)
+++.|++++|.+.... .+..+++|++|++++|.+++. ...++|++|++++|.+++..+. .+
T Consensus 59 ~L~~L~Ls~n~l~~~~-------~~~~l~~L~~L~Ls~n~l~~l---------~~~~~L~~L~l~~n~l~~~~~~---~~ 119 (317)
T 3o53_A 59 KLELLNLSSNVLYETL-------DLESLSTLRTLDLNNNYVQEL---------LVGPSIETLHAANNNISRVSCS---RG 119 (317)
T ss_dssp TCCEEECTTSCCEEEE-------EETTCTTCCEEECCSSEEEEE---------EECTTCCEEECCSSCCSEEEEC---CC
T ss_pred cCCEEECCCCcCCcch-------hhhhcCCCCEEECcCCccccc---------cCCCCcCEEECCCCccCCcCcc---cc
Confidence 4555555555442111 144555555555555555432 1225666666666666644333 35
Q ss_pred CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccc-cCCCCCCEEEcCCccccccccchhhhhcCCCC
Q 021196 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDY-RGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLP 233 (316)
Q Consensus 155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~-~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~ 233 (316)
++|++|++++|++++..+ ..+..+++|++|++++|.+++..+. .+ ..+++|++|++++|.++ .++. ...++
T Consensus 120 ~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~-----~~~~-~~~l~ 191 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQYNFIY-----DVKG-QVVFA 191 (317)
T ss_dssp SSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTTSCCC-----EEEC-CCCCT
T ss_pred CCCCEEECCCCCCCCccc-hhhhccCCCCEEECCCCCCCcccHH-HHhhccCcCCEEECCCCcCc-----cccc-ccccc
Confidence 778888888888875444 3778888899999999998886655 44 47888999999999887 4433 34588
Q ss_pred CCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc-cccCC-Cccccchhhh
Q 021196 234 SLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT-GALHG-QGKLRVSEAF 311 (316)
Q Consensus 234 ~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~-g~ip~-~~~l~~L~~l 311 (316)
+|++|++++|.++ .+|. .+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +.+|. ++.++.|+.+
T Consensus 192 ~L~~L~Ls~N~l~-~l~~-~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 192 KLKTLDLSSNKLA-FMGP-EFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp TCCEEECCSSCCC-EECG-GGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred cCCEEECCCCcCC-cchh-hhcccCcccEEECcCCccc--chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 8999999999998 5666 5888899999999999998 57888888999999999999988 77777 7888888877
Q ss_pred hhh
Q 021196 312 MIL 314 (316)
Q Consensus 312 ~i~ 314 (316)
++.
T Consensus 268 ~l~ 270 (317)
T 3o53_A 268 AKQ 270 (317)
T ss_dssp HHH
T ss_pred ECC
Confidence 653
No 44
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.6e-25 Score=208.80 Aligned_cols=213 Identities=22% Similarity=0.213 Sum_probs=142.5
Q ss_pred cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCC----------
Q 021196 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN---------- 144 (316)
Q Consensus 75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~---------- 144 (316)
+++.|+|+++.+... .+..|..+++|++|+|++|.+++..| +..+++|++|++++|.++
T Consensus 35 ~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~~~~~L~~ 103 (487)
T 3oja_A 35 NVKELDLSGNPLSQI-----SAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELLVGPSIET 103 (487)
T ss_dssp GCCEEECCSSCCCCC-----CGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEEECTTCCE
T ss_pred CccEEEeeCCcCCCC-----CHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCCCCCCcCE
Confidence 577777777766432 23456677777777777777765543 555666666666666554
Q ss_pred ---------cccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCcccccccc-CCCCCCEEEcCC
Q 021196 145 ---------NSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYR-GLRKLNTLYLGG 214 (316)
Q Consensus 145 ---------~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~-~l~~L~~L~l~~ 214 (316)
+..+. .+++|++|++++|.+++..|. .+..+++|++|++++|.+++..|. .+. .+++|++|++++
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQY 178 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTT
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChH-HHhhhCCcccEEecCC
Confidence 32222 346677777777777755454 667777777777777777776655 444 677777777777
Q ss_pred ccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcc
Q 021196 215 TEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCT 294 (316)
Q Consensus 215 n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~ 294 (316)
|.++ .+|. ...+++|+.|++++|.+++ +|+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.
T Consensus 179 N~l~-----~~~~-~~~l~~L~~L~Ls~N~l~~-~~~-~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 179 NFIY-----DVKG-QVVFAKLKTLDLSSNKLAF-MGP-EFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp SCCC-----EEEC-CCCCTTCCEEECCSSCCCE-ECG-GGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCC
T ss_pred Cccc-----cccc-cccCCCCCEEECCCCCCCC-CCH-hHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCC
Confidence 7776 3332 3357778888888887774 555 46777788888888888774 67777777788888888887
Q ss_pred cc-cccCC-Cccccchhhhhh
Q 021196 295 LT-GALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 295 l~-g~ip~-~~~l~~L~~l~i 313 (316)
+. +.+|. ++.++.|+.+.+
T Consensus 249 l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp BCHHHHHHHHTTCHHHHHHHH
T ss_pred CcCcchHHHHHhCCCCcEEec
Confidence 76 56665 666777766654
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=8.2e-25 Score=211.99 Aligned_cols=211 Identities=25% Similarity=0.241 Sum_probs=153.5
Q ss_pred cccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccc--cccCc
Q 021196 96 ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI--GSIDI 173 (316)
Q Consensus 96 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--g~ip~ 173 (316)
+..+..+++|++|++++|.+.+.++.. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|.
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~ 474 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQ---EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSG---GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSC
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcc---cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCc
Confidence 445677888888888888887766642 3777888888888888877766777777788888888877765 44565
Q ss_pred ccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh----hhcCCCCCCCEEECCCCCCCCcc
Q 021196 174 KGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL----QSIGSLPSLKTLYLSSTNFKGTV 249 (316)
Q Consensus 174 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p----~~~~~l~~L~~L~l~~n~l~g~~ 249 (316)
.+..+++|++|++++|++++..+. .+..+++|++|++++|.++......+| ..+..+++|++|++++|+++ .+
T Consensus 475 -~~~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i 551 (680)
T 1ziw_A 475 -PFQPLRNLTILDLSNNNIANINDD-MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EI 551 (680)
T ss_dssp -TTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CC
T ss_pred -ccccCCCCCEEECCCCCCCcCChh-hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CC
Confidence 778888888888888888874333 778888888888888887611111111 13677788888888888887 67
Q ss_pred chhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cc-cccchhhhhh
Q 021196 250 VNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QG-KLRVSEAFMI 313 (316)
Q Consensus 250 p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~-~l~~L~~l~i 313 (316)
|...+..+++|++|++++|++++ ..+..+..+++|+.|++++|++++..|. ++ .+++|+.+++
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l 616 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEEC
T ss_pred CHHHcccccCcceeECCCCCCCc-CCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEc
Confidence 76567888888888888888875 4444567788888888888888876665 44 5666666543
No 46
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=2.4e-24 Score=185.85 Aligned_cols=187 Identities=23% Similarity=0.299 Sum_probs=161.2
Q ss_pred ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (316)
Q Consensus 99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~ 178 (316)
...+++|+.|++++|.+... + .+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++ +++..+..
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~-~-----~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~ 107 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV-Q-----GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQS-LPNGVFDK 107 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC-T-----TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCC-CCTTTTTT
T ss_pred cccccceeeeeeCCCCcccc-c-----ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCc-cChhHhcC
Confidence 45688999999999988643 3 27889999999999999986 3 478899999999999999985 45447899
Q ss_pred CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCC
Q 021196 179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT 258 (316)
Q Consensus 179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~ 258 (316)
+++|++|++++|++++..+. .+..+++|++|++++|.++ + ..+..+..+++|++|++++|++++ +|...+..++
T Consensus 108 l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~-~---~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~ 181 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDG-VFDKLTNLTYLNLAHNQLQ-S---LPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLT 181 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCC-C---CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCT
T ss_pred CcCCCEEECCCCcCCccCHH-HhccCCCCCEEECCCCccC-c---cCHHHhccCccCCEEECCCCCcCc-cCHHHhcCCc
Confidence 99999999999999985444 7899999999999999998 3 334457899999999999999995 5554789999
Q ss_pred CCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC
Q 021196 259 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 301 (316)
Q Consensus 259 ~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~ 301 (316)
+|++|++++|++++ ..|..+..+++|+.|++++|.+.+..|.
T Consensus 182 ~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 182 QLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp TCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 99999999999997 6777789999999999999999987664
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=2.6e-24 Score=190.69 Aligned_cols=214 Identities=19% Similarity=0.226 Sum_probs=179.8
Q ss_pred EEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCC
Q 021196 76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155 (316)
Q Consensus 76 v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 155 (316)
++.++++++++..... .+ .+++++|++++|.+++..+. .+.++++|++|++++|.+++..|..+..++
T Consensus 33 l~~l~~~~~~l~~lp~------~~--~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPK------DL--PPDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLV 100 (330)
T ss_dssp TTEEECTTSCCCSCCC------SC--CTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CeEEEecCCCccccCc------cC--CCCCeEEECCCCcCCEeChh----hhccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence 4568888877643221 12 36899999999999876654 389999999999999999988899999999
Q ss_pred CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCC
Q 021196 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSL 235 (316)
Q Consensus 156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L 235 (316)
+|++|++++|+++ .+|. .+. ++|++|++++|.+++..+. .+..+++|++|++++|.++.. +..+..+..+++|
T Consensus 101 ~L~~L~Ls~n~l~-~l~~-~~~--~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L 173 (330)
T 1xku_A 101 KLERLYLSKNQLK-ELPE-KMP--KTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSS--GIENGAFQGMKKL 173 (330)
T ss_dssp TCCEEECCSSCCS-BCCS-SCC--TTCCEEECCSSCCCBBCHH-HHTTCTTCCEEECCSSCCCGG--GBCTTGGGGCTTC
T ss_pred CCCEEECCCCcCC-ccCh-hhc--ccccEEECCCCcccccCHh-HhcCCccccEEECCCCcCCcc--CcChhhccCCCCc
Confidence 9999999999987 6776 333 7999999999999985444 899999999999999998621 1445678899999
Q ss_pred CEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196 236 KTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 236 ~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
++|++++|.++ .+|. .+. ++|++|++++|.+++ ..|..+..+++|++|++++|++++..+. ++.+++|++|++
T Consensus 174 ~~L~l~~n~l~-~l~~-~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 174 SYIRIADTNIT-TIPQ-GLP--PSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247 (330)
T ss_dssp CEEECCSSCCC-SCCS-SCC--TTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred CEEECCCCccc-cCCc-ccc--ccCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence 99999999998 6776 333 899999999999997 6788999999999999999999988775 888999988865
No 48
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=6.5e-24 Score=184.85 Aligned_cols=200 Identities=23% Similarity=0.254 Sum_probs=167.6
Q ss_pred CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccC
Q 021196 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (316)
Q Consensus 73 ~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 152 (316)
...++.++++++++..... .+ .++++.|++++|.+++..+. .+..+++|++|++++|.+++ ++.. +
T Consensus 9 l~~l~~l~~~~~~l~~ip~------~~--~~~l~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~-~~~~-~ 74 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPP------DL--PKDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRAELTK-LQVD-G 74 (290)
T ss_dssp STTCCEEECTTSCCSSCCS------CC--CTTCCEEECTTSCCSEEEGG----GGTTCTTCCEEECTTSCCCE-EECC-S
T ss_pred cCCccEEECCCCCCCcCCC------CC--CCCCCEEEcCCCcCCccCHH----HhhcCCCCCEEECCCCccCc-ccCC-C
Confidence 3467788888887643221 12 26899999999999876664 38999999999999999985 4433 7
Q ss_pred CCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhcCC
Q 021196 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIGS 231 (316)
Q Consensus 153 ~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~ 231 (316)
.+++|++|++++|++. .+|. .+..+++|++|++++|++++..+. .+..+++|++|++++|.++ .+| ..+..
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~-~~~~l~~L~~L~l~~N~l~~l~~~-~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~ 146 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLG-ALRGLGELQELYLKGNELK-----TLPPGLLTP 146 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCC-CTTTCTTCCEEECCSSCCCCCCSS-TTTTCTTCCEEECTTSCCC-----CCCTTTTTT
T ss_pred CCCcCCEEECCCCcCC-cCch-hhccCCCCCEEECCCCcCcccCHH-HHcCCCCCCEEECCCCCCC-----ccChhhccc
Confidence 8999999999999987 6786 788999999999999999985444 8999999999999999998 444 45788
Q ss_pred CCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccccc
Q 021196 232 LPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 297 (316)
Q Consensus 232 l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g 297 (316)
+++|+.|++++|+++ .+|...+..+++|+.|++++|+++ .+|..+...++|+.+++++|.+..
T Consensus 147 l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~--~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCC--ccChhhcccccCCeEEeCCCCccC
Confidence 999999999999998 677767888999999999999998 689899899999999999998864
No 49
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=4.7e-24 Score=183.85 Aligned_cols=196 Identities=21% Similarity=0.231 Sum_probs=167.2
Q ss_pred CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCC
Q 021196 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL 182 (316)
Q Consensus 103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L 182 (316)
...+.++++++.++. +|.. + .+++++|++++|.+++..+..|..+++|++|++++|.++ .+|...+..+++|
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~----~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L 87 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSN----I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNL 87 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSC----C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTC
T ss_pred CCCCEEEccCCCCCc-cCCC----C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCC
Confidence 467899999999885 5532 3 268999999999999777778999999999999999998 5676577899999
Q ss_pred CEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCE
Q 021196 183 EELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEE 262 (316)
Q Consensus 183 ~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~ 262 (316)
++|++++|.+++. ++..+..+++|++|++++|.++ + ..+..+..+++|++|++++|.++ .+|...+..+++|++
T Consensus 88 ~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~-~---~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 88 ETLWVTDNKLQAL-PIGVFDQLVNLAELRLDRNQLK-S---LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKE 161 (270)
T ss_dssp CEEECCSSCCCCC-CTTTTTTCSSCCEEECCSSCCC-C---CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CEEECCCCcCCcC-CHhHcccccCCCEEECCCCccC-e---eCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccce
Confidence 9999999999985 4447899999999999999998 4 33456789999999999999998 566657899999999
Q ss_pred EECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196 263 LILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 263 L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
|++++|.+++ ..+..+..+++|++|++++|++++..+. +..++.|+.|++
T Consensus 162 L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 162 LRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp EECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred eEecCCcCcE-eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 9999999986 5556688999999999999999976665 888888887765
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.3e-24 Score=206.09 Aligned_cols=108 Identities=21% Similarity=0.179 Sum_probs=71.4
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 153 (316)
.+++.|++++|.+... .+..|..+++|++|++++|.+++..|. .|.++++|++|++++|.++ .+|.. .
T Consensus 52 ~~L~~L~Ls~N~i~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQNSISEL-----RMPDISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLDVSHNRLQ-NISCC--P 119 (562)
T ss_dssp TTCCEEECCSSCCCCC-----CGGGTTTCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred CCcCEEECCCCCcccc-----ChhhhccCCCccEEECCCCCCCcCCHH----HhCCCCCCCEEECCCCcCC-ccCcc--c
Confidence 4677788888776432 234567777777777777777765553 2677777777777777776 45555 6
Q ss_pred CCCCCEEEeeCccccc-ccCcccccCCCCCCEEEcCCCcCCC
Q 021196 154 LSSLRNLSLIGNRLIG-SIDIKGLDSLGNLEELDMSDNAINN 194 (316)
Q Consensus 154 l~~L~~L~L~~n~l~g-~ip~~~l~~l~~L~~L~L~~n~~~~ 194 (316)
+++|++|++++|++.+ .+|. .+.++++|++|++++|.+++
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCG-GGGGCTTCCEEEEECSBCCT
T ss_pred cccCCEEECCCCCccccCchH-hhcccCcccEEecCCCcccc
Confidence 7777777777777664 2333 66667777777776666543
No 51
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.9e-25 Score=196.67 Aligned_cols=205 Identities=20% Similarity=0.111 Sum_probs=166.5
Q ss_pred CcEEEEEcCCCCccccccccccccc-ccCCCCCcEEEccCCccCCccccccccccCCC-----CCCcEEECCCCCCCccc
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASL-FTPFQQLESLYLIGNNIAGCVENEGLDTLSRL-----NNLKFLYLDYNHFNNSI 147 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~ 147 (316)
.+++.|+++++.+.+..+ ... +..+++|++|++++|.+++. |.. +..+ ++|++|++++|.+.+..
T Consensus 95 ~~L~~L~L~~n~l~~~~~----~~~~~~~l~~L~~L~Ls~N~l~~~-~~~----~~~l~~~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAP----PPLLEATGPDLNILNLRNVSWATR-DAW----LAELQQWLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp SCCCEEEEEEEBCBSCCC----CCSSSCCSCCCSEEEEESCBCSSS-SSH----HHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred CCccEEEccCCcccchhH----HHHHHhcCCCccEEEccCCCCcch-hHH----HHHHHHhhcCCCcEEEeeCCCCccch
Confidence 467778888877643221 222 27899999999999999987 532 4444 89999999999999888
Q ss_pred ccccCCCCCCCEEEeeCcccccc--cCc-ccccCCCCCCEEEcCCCcCCC--ccccccccCCCCCCEEEcCCcccccccc
Q 021196 148 FSSLGGLSSLRNLSLIGNRLIGS--IDI-KGLDSLGNLEELDMSDNAINN--LVIPKDYRGLRKLNTLYLGGTEIAMIDG 222 (316)
Q Consensus 148 p~~~~~l~~L~~L~L~~n~l~g~--ip~-~~l~~l~~L~~L~L~~n~~~~--~~p~~~~~~l~~L~~L~l~~n~l~~~~~ 222 (316)
|..++.+++|++|++++|++.+. +|. ..+..+++|++|++++|++++ .++...+..+++|++|++++|.++ +
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~-- 242 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR-D-- 242 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC-S--
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC-c--
Confidence 89999999999999999998765 233 123889999999999999985 234435568899999999999998 4
Q ss_pred chhh-hhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccc
Q 021196 223 SKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA 298 (316)
Q Consensus 223 ~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ 298 (316)
..| ..+..+++|++|++++|.++ .+|. .+. ++|++|++++|++++ +|. +..+++|++|++++|++++.
T Consensus 243 -~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~--~~L~~L~Ls~N~l~~--~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 243 -AAGAPSCDWPSQLNSLNLSFTGLK-QVPK-GLP--AKLSVLDLSYNRLDR--NPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp -SCCCSCCCCCTTCCEEECTTSCCS-SCCS-SCC--SEEEEEECCSSCCCS--CCC-TTTSCEEEEEECTTCTTTCC
T ss_pred -ccchhhhhhcCCCCEEECCCCccC-hhhh-hcc--CCceEEECCCCCCCC--Chh-HhhCCCCCEEeccCCCCCCC
Confidence 333 45667899999999999999 8887 554 899999999999996 476 89999999999999999863
No 52
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1.2e-25 Score=221.37 Aligned_cols=190 Identities=15% Similarity=0.188 Sum_probs=158.6
Q ss_pred cccccCCCCCcEEEccCCccCC-----------------ccccccccccC--CCCCCcEEECCCCCCCcccccccCCCCC
Q 021196 96 ASLFTPFQQLESLYLIGNNIAG-----------------CVENEGLDTLS--RLNNLKFLYLDYNHFNNSIFSSLGGLSS 156 (316)
Q Consensus 96 ~~~~~~l~~L~~L~L~~n~~~~-----------------~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 156 (316)
+..++++++|++|+|++|.++| .+|.. ++ ++++|++|++++|.+.+.+|..++++++
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~----l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE----LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC----CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh----hhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence 4568889999999999999998 36653 66 8999999999999999999999999999
Q ss_pred CCEEEeeCcc-ccc-ccCcccccC-------CCCCCEEEcCCCcCCCcccc-ccccCCCCCCEEEcCCccccccccchhh
Q 021196 157 LRNLSLIGNR-LIG-SIDIKGLDS-------LGNLEELDMSDNAINNLVIP-KDYRGLRKLNTLYLGGTEIAMIDGSKVL 226 (316)
Q Consensus 157 L~~L~L~~n~-l~g-~ip~~~l~~-------l~~L~~L~L~~n~~~~~~p~-~~~~~l~~L~~L~l~~n~l~~~~~~~~p 226 (316)
|++|++++|+ ++| .+|. .+.+ +++|++|++++|.++ .+|. ..+.++++|++|++++|.++ .+|
T Consensus 517 L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-----~lp 589 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-----HLE 589 (876)
T ss_dssp CCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-----BCC
T ss_pred CCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-----cch
Confidence 9999999998 887 7776 4444 458999999999998 4654 36888999999999999987 677
Q ss_pred hhcCCCCCCCEEECCCCCCCCccchhhhcCCCC-CCEEECCCCCCCcchhhhhhcCCCC--CcEEEccCcccccccCC
Q 021196 227 QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTN-LEELILDDSDLHISQLLQSIASFTS--LKYLSMGFCTLTGALHG 301 (316)
Q Consensus 227 ~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~-L~~L~L~~n~l~g~~ip~~l~~~~~--L~~L~l~~N~l~g~ip~ 301 (316)
.++.+++|+.|++++|.++ .+|. .+..+++ |+.|++++|.++ .+|..+...+. |+.|++++|+++|.+|.
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EIPE-DFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CCCT-TSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred -hhcCCCcceEEECcCCccc-cchH-HHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 8888999999999999998 8887 7888888 999999999987 57877766644 88888888888887775
No 53
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=1.5e-25 Score=197.18 Aligned_cols=196 Identities=18% Similarity=0.124 Sum_probs=156.1
Q ss_pred CCCCcEEEccCCccCCcccccccccc--CCCCCCcEEECCCCCCCcccc----cccCCCCCCCEEEeeCcccccccCccc
Q 021196 102 FQQLESLYLIGNNIAGCVENEGLDTL--SRLNNLKFLYLDYNHFNNSIF----SSLGGLSSLRNLSLIGNRLIGSIDIKG 175 (316)
Q Consensus 102 l~~L~~L~L~~n~~~~~~~~~~~~~l--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~g~ip~~~ 175 (316)
+++|++|++++|.+.+..|.. + ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+ ..
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~----~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~ 164 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPL----PLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC-EQ 164 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCC----SSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT-TS
T ss_pred cCceeEEEeeCCEeccchhhh----hhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH-HH
Confidence 467999999999998888764 4 889999999999999987544 345678999999999999975444 48
Q ss_pred ccCCCCCCEEEcCCCcCCCc--c-ccccccCCCCCCEEEcCCccccccccchhhh----hcCCCCCCCEEECCCCCCCCc
Q 021196 176 LDSLGNLEELDMSDNAINNL--V-IPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ----SIGSLPSLKTLYLSSTNFKGT 248 (316)
Q Consensus 176 l~~l~~L~~L~L~~n~~~~~--~-p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~----~~~~l~~L~~L~l~~n~l~g~ 248 (316)
+..+++|++|++++|++.+. + +...+..+++|++|++++|.++ .++. .++.+++|++|++++|++++.
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-----TPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-----CHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-----chHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 88999999999999998763 2 2223467889999999999997 3443 357788999999999999977
Q ss_pred cchhhhcCC---CCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196 249 VVNQELHNF---TNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI 313 (316)
Q Consensus 249 ~p~~~~~~l---~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i 313 (316)
+|. .+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |.+..++.|+.|++
T Consensus 240 ~p~-~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L 301 (310)
T 4glp_A 240 VNP-SAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTL 301 (310)
T ss_dssp CCS-CCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEEC
T ss_pred chh-hHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEEC
Confidence 676 55555 69999999999998 5787664 7999999999999864 44677788887765
No 54
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=2.2e-24 Score=202.65 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=72.5
Q ss_pred cCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcC
Q 021196 177 DSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHN 256 (316)
Q Consensus 177 ~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~ 256 (316)
..+++|++|++++|++++.+|. .+..+++|++|++++|.++ + ...+|..+..+++|++|++++|.+++.+|...+..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLK-E-LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCC-B-HHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred hhCCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccC-c-cccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence 5667788888888888776666 7777888888888888776 2 11345667777788888888888776576544555
Q ss_pred CCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196 257 FTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296 (316)
Q Consensus 257 l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~ 296 (316)
+++|++|++++|++++ .+|..+. ++|+.|++++|+++
T Consensus 398 l~~L~~L~Ls~N~l~~-~~~~~l~--~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTD-TIFRCLP--PRIKVLDLHSNKIK 434 (520)
T ss_dssp CTTCCEEECCSSCCCG-GGGGSCC--TTCCEEECCSSCCC
T ss_pred CccCCEEECcCCCCCc-chhhhhc--ccCCEEECCCCccc
Confidence 5566666666655554 4443322 33444444444443
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=4.8e-25 Score=197.28 Aligned_cols=210 Identities=19% Similarity=0.206 Sum_probs=176.4
Q ss_pred CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccccc--c
Q 021196 73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS--S 150 (316)
Q Consensus 73 ~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~--~ 150 (316)
-.+++.|++++|.+... .+..+..+++|++|++++|.+++..+. .+.++++|++|++++|.+++ +|. .
T Consensus 75 l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~-l~~~~~ 144 (353)
T 2z80_A 75 CVNLQALVLTSNGINTI-----EEDSFSSLGSLEHLDLSYNYLSNLSSS----WFKPLSSLTFLNLLGNPYKT-LGETSL 144 (353)
T ss_dssp CTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCSSCCHH----HHTTCTTCSEEECTTCCCSS-SCSSCS
T ss_pred CCCCCEEECCCCccCcc-----CHhhcCCCCCCCEEECCCCcCCcCCHh----HhCCCccCCEEECCCCCCcc-cCchhh
Confidence 35789999999987532 245688999999999999999865443 37899999999999999984 554 7
Q ss_pred cCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhh-c
Q 021196 151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQS-I 229 (316)
Q Consensus 151 ~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~-~ 229 (316)
+..+++|++|++++|...+.+++..+..+++|++|++++|.+++..|. .+..+++|++|++++|.++ .+|.. +
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~-----~~~~~~~ 218 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK-SLKSIQNVSHLILHMKQHI-----LLLEIFV 218 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSCST-----THHHHHH
T ss_pred hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH-HHhccccCCeecCCCCccc-----cchhhhh
Confidence 889999999999999644456655899999999999999999997676 8999999999999999987 66654 4
Q ss_pred CCCCCCCEEECCCCCCCCc-------------------------------cchhhhcCCCCCCEEECCCCCCCcchhhhh
Q 021196 230 GSLPSLKTLYLSSTNFKGT-------------------------------VVNQELHNFTNLEELILDDSDLHISQLLQS 278 (316)
Q Consensus 230 ~~l~~L~~L~l~~n~l~g~-------------------------------~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~ 278 (316)
..+++|++|++++|.+++. +|. .+..+++|++|++++|+++ .+|..
T Consensus 219 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~-~l~~l~~L~~L~Ls~N~l~--~i~~~ 295 (353)
T 2z80_A 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLK--SVPDG 295 (353)
T ss_dssp HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH-HHHTCTTCCEEECCSSCCC--CCCTT
T ss_pred hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH-HHhcccCCCEEECCCCCCC--ccCHH
Confidence 4588999999999998862 333 5788999999999999998 57766
Q ss_pred -hcCCCCCcEEEccCcccccccCC
Q 021196 279 -IASFTSLKYLSMGFCTLTGALHG 301 (316)
Q Consensus 279 -l~~~~~L~~L~l~~N~l~g~ip~ 301 (316)
+..+++|++|++++|++.+..|.
T Consensus 296 ~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 296 IFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp TTTTCTTCCEEECCSSCBCCCHHH
T ss_pred HHhcCCCCCEEEeeCCCccCcCCC
Confidence 58999999999999999988764
No 56
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=6e-26 Score=201.55 Aligned_cols=211 Identities=21% Similarity=0.246 Sum_probs=92.5
Q ss_pred CCcccceEEcCCCCcEEEEEcCCCCcccccccccccccccCC--CCCcEEEccCCccCCccccccccccCCCCCCcEEEC
Q 021196 61 CCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPF--QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL 138 (316)
Q Consensus 61 ~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L 138 (316)
|.+|.++.|+ ...++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++
T Consensus 36 c~~W~~~~~~--~~~~~~l~l~~~~~~--------~~~~~~~~~~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L 100 (336)
T 2ast_B 36 CKRWYRLASD--ESLWQTLDLTGKNLH--------PDVTGRLLSQGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDL 100 (336)
T ss_dssp CHHHHHHHTC--STTSSEEECTTCBCC--------HHHHHHHHHTTCSEEECTTCEECSCCCS-----CCCCBCCCEEEC
T ss_pred HHHHHHHhcC--chhheeeccccccCC--------HHHHHhhhhccceEEEcCCccccccchh-----hccCCCCCEEEc
Confidence 3457666654 234556666655442 1112222 3444444444444444332 334444444444
Q ss_pred CCCCCCcc-cccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCC-cCCCc-cccccccCCCCCCEEEcCCc
Q 021196 139 DYNHFNNS-IFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN-AINNL-VIPKDYRGLRKLNTLYLGGT 215 (316)
Q Consensus 139 ~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n-~~~~~-~p~~~~~~l~~L~~L~l~~n 215 (316)
++|.+++. ++..+..+++|++|++++|.+++..+. .+..+++|++|++++| .+++. ++. .+..+++|++|++++|
T Consensus 101 ~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 101 SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCC
T ss_pred cCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCC
Confidence 44444433 444444444444444444444433333 3444444444444444 34332 222 3444444444444444
Q ss_pred -cccccccchhhhhcCCCC-CCCEEECCCC--CCC-CccchhhhcCCCCCCEEECCCCC-CCcchhhhhhcCCCCCcEEE
Q 021196 216 -EIAMIDGSKVLQSIGSLP-SLKTLYLSST--NFK-GTVVNQELHNFTNLEELILDDSD-LHISQLLQSIASFTSLKYLS 289 (316)
Q Consensus 216 -~l~~~~~~~~p~~~~~l~-~L~~L~l~~n--~l~-g~~p~~~~~~l~~L~~L~L~~n~-l~g~~ip~~l~~~~~L~~L~ 289 (316)
.++.. .++..+..++ +|++|++++| .++ +.+|. .+..+++|++|++++|. +++ ..+..+..+++|++|+
T Consensus 179 ~~l~~~---~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 179 FDFTEK---HVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKN-DCFQEFFQLNYLQHLS 253 (336)
T ss_dssp TTCCHH---HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCG-GGGGGGGGCTTCCEEE
T ss_pred CCcChH---HHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCH-HHHHHHhCCCCCCEee
Confidence 44311 2334444444 4444444444 232 12222 33444444444444444 333 3333444444444444
Q ss_pred ccCc
Q 021196 290 MGFC 293 (316)
Q Consensus 290 l~~N 293 (316)
+++|
T Consensus 254 l~~~ 257 (336)
T 2ast_B 254 LSRC 257 (336)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 4444
No 57
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=8.7e-24 Score=184.07 Aligned_cols=195 Identities=18% Similarity=0.168 Sum_probs=166.2
Q ss_pred ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (316)
Q Consensus 99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~ 178 (316)
+.+++++++++++++.++. +|.. + .+++++|++++|.+++..+..+..+++|++|++++|.+++ ++. ...
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~----~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~--~~~ 75 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPD----L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV--DGT 75 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSC----C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC--CSC
T ss_pred ccccCCccEEECCCCCCCc-CCCC----C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC--CCC
Confidence 5678999999999999875 4432 3 3689999999999998888999999999999999999984 554 378
Q ss_pred CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhcCCCCCCCEEECCCCCCCCccchhhhcCC
Q 021196 179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELHNF 257 (316)
Q Consensus 179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l 257 (316)
+++|++|++++|+++. +|. .+..+++|++|++++|.++ .+| ..+..+++|++|++++|+++ .+|...+..+
T Consensus 76 l~~L~~L~Ls~N~l~~-l~~-~~~~l~~L~~L~l~~N~l~-----~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l 147 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLT-----SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPT 147 (290)
T ss_dssp CTTCCEEECCSSCCSS-CCC-CTTTCTTCCEEECCSSCCC-----CCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTC
T ss_pred CCcCCEEECCCCcCCc-Cch-hhccCCCCCEEECCCCcCc-----ccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccc
Confidence 9999999999999985 666 8899999999999999998 454 57899999999999999999 5666578999
Q ss_pred CCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196 258 TNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 258 ~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
++|+.|++++|++++ ..+..+..+++|+.|++++|+++ .+|. +..++.|+.+++
T Consensus 148 ~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 148 PKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp TTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEEC
T ss_pred cCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEe
Confidence 999999999999985 33445688999999999999998 5666 666777776653
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=206.08 Aligned_cols=193 Identities=20% Similarity=0.156 Sum_probs=118.3
Q ss_pred cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL 179 (316)
Q Consensus 100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l 179 (316)
..+++|++|++++|.+++.... ...+..+++|++|++++|.+.+. +..+..+++|++|++++|.+.+..|...+.++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCC--SQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEE--EHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred ccCCCCCEEeCcCCccCccccc--cccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcC
Confidence 3455566666666655543210 01255566666666666666543 33366666666666666666654443356666
Q ss_pred CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCC
Q 021196 180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTN 259 (316)
Q Consensus 180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~ 259 (316)
++|++|++++|.+.+..|. .+..+++|++|++++|.++.+ .+|..+..+++|++|++++|++++..|. .+..+++
T Consensus 421 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~---~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~ 495 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSS 495 (570)
T ss_dssp TTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTT
T ss_pred CCCCEEeCcCCcccccchh-hhhcCCcCcEEECcCCcCccc---cchhhhhcccCCCEEECCCCccccCChh-hhhcccC
Confidence 6677777777766665544 666666777777777666523 4566666667777777777776644444 6666677
Q ss_pred CCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC
Q 021196 260 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 301 (316)
Q Consensus 260 L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~ 301 (316)
|++|++++|++++ ..|..+..+++|+.|++++|++++..|.
T Consensus 496 L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 496 LQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEeCCCCcCCC-CCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 7777777777665 4555566667777777777777666665
No 59
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=4.3e-24 Score=202.63 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=86.0
Q ss_pred cCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcC
Q 021196 177 DSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHN 256 (316)
Q Consensus 177 ~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~ 256 (316)
..+++|++|++++|.+++.+|. .+..+++|++|++++|.++ + ...+|..+.++++|++|++++|.+++.+|...+..
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 426 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLK-N-FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCC-B-TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred cCCCCceEEECCCCccccchhh-hhcccCCCCEEECCCCCcC-C-cccchhhhcCCCCCCEEECCCCcCCCccChhhhcC
Confidence 5677888888888888887666 7888888888888888886 2 11345667888888888888888886677644555
Q ss_pred CCCCCEEECCCCCCCcch---------------------hhhhhcCCCCCcEEEccCcccccccCC--Cccccchhhhh
Q 021196 257 FTNLEELILDDSDLHISQ---------------------LLQSIASFTSLKYLSMGFCTLTGALHG--QGKLRVSEAFM 312 (316)
Q Consensus 257 l~~L~~L~L~~n~l~g~~---------------------ip~~l~~~~~L~~L~l~~N~l~g~ip~--~~~l~~L~~l~ 312 (316)
+++|++|++++|++++ . +|..+..+++|++|++++|++++ +|. ++.++.|+.|+
T Consensus 427 l~~L~~L~l~~n~l~~-~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 427 AESILVLNLSSNMLTG-SVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIW 503 (562)
T ss_dssp CTTCCEEECCSSCCCG-GGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEE
T ss_pred cccCCEEECCCCCCCc-chhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEE
Confidence 5556666655555554 3 44444455555555555555552 332 45555555443
No 60
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=1.9e-24 Score=214.27 Aligned_cols=225 Identities=16% Similarity=0.154 Sum_probs=171.5
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccc--c
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS--L 151 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~--~ 151 (316)
.+++.|+|+++... + .+.+..|.++++|++|+|++|.+.+..|.. |.++++|++|++++|.+++.+|.. +
T Consensus 48 ~~L~~LdLs~n~~~--~--~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 48 EQLQLLELGSQYTP--L--TIDKEAFRNLPNLRILDLGSSKIYFLHPDA----FQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp CSCSEEEECTTCCC--C--EECTTTTSSCTTCCEEECTTCCCCEECTTS----SCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred ccCeEEeCCCCCCc--c--ccCHHHhcCCCCCCEEECCCCcCcccCHhH----ccCCcccCEeeCcCCCCCcccccCccc
Confidence 46778888887441 1 233566788888888888888887776643 788888888888888888766655 7
Q ss_pred CCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCcccccccc--------------------------CCC
Q 021196 152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYR--------------------------GLR 205 (316)
Q Consensus 152 ~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~--------------------------~l~ 205 (316)
.++++|++|++++|.+.+..++..++++++|++|++++|.+++..+. .+. .+.
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~ 198 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSS
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH-HcccccCCccceEECCCCccccccccchhhcC
Confidence 78888888888888887655544678888888888888877665433 222 222
Q ss_pred ------CCCEEEcCCccccccccchhhhhc------------------------------------CC--CCCCCEEECC
Q 021196 206 ------KLNTLYLGGTEIAMIDGSKVLQSI------------------------------------GS--LPSLKTLYLS 241 (316)
Q Consensus 206 ------~L~~L~l~~n~l~~~~~~~~p~~~------------------------------------~~--l~~L~~L~l~ 241 (316)
.|+.|++++|.++ + .++..+ .. .++|+.|+++
T Consensus 199 ~~~~~~~L~~L~Ls~n~l~-~---~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls 274 (844)
T 3j0a_A 199 NPFRNMVLEILDVSGNGWT-V---DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274 (844)
T ss_dssp CTTTTCCBSEEBCSSCCSS-T---TTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECT
T ss_pred CccccCceeEEecCCCcCc-h---hHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECC
Confidence 2788888888775 3 222211 11 2689999999
Q ss_pred CCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196 242 STNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 242 ~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
+|.+.+..|. .+..+++|+.|++++|++++ ..|..+..+++|++|++++|++++..|. ++.+++|+.|++
T Consensus 275 ~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 275 HGFVFSLNSR-VFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp TCCCCEECSC-CSSSCCCCCEEEEESCCCCE-ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCcccccChh-hhhcCCCCCEEECCCCcCCC-CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 9999855554 89999999999999999998 7788899999999999999999988787 999999998875
No 61
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=5.2e-24 Score=180.22 Aligned_cols=190 Identities=17% Similarity=0.222 Sum_probs=136.1
Q ss_pred CCcEEEccCCccCCccccccccccCCCCCCcEEECCCCC-CCcccccccCCCCCCCEEEeeC-cccccccCcccccCCCC
Q 021196 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH-FNNSIFSSLGGLSSLRNLSLIG-NRLIGSIDIKGLDSLGN 181 (316)
Q Consensus 104 ~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~g~ip~~~l~~l~~ 181 (316)
+|++|++++|.+++..+. .+.++++|++|++++|. +++..+..|.++++|++|++++ |+++ .+++..+.++++
T Consensus 32 ~l~~L~l~~n~l~~i~~~----~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~ 106 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSH----AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPL 106 (239)
T ss_dssp TCCEEEEESCCCSEECTT----TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTT
T ss_pred cccEEEEeCCcceEECHH----HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCC
Confidence 678888888887765543 37778888888888886 6655555677888888888887 7776 455447778888
Q ss_pred CCEEEcCCCcCCCccccccccCCCCCC---EEEcCCc-cccccccchhhh-hcCCCCCCC-EEECCCCCCCCccchhhhc
Q 021196 182 LEELDMSDNAINNLVIPKDYRGLRKLN---TLYLGGT-EIAMIDGSKVLQ-SIGSLPSLK-TLYLSSTNFKGTVVNQELH 255 (316)
Q Consensus 182 L~~L~L~~n~~~~~~p~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~p~-~~~~l~~L~-~L~l~~n~l~g~~p~~~~~ 255 (316)
|++|++++|.+++ +|. +..+++|+ +|++++| .++ .+|. .+..+++|+ +|++++|.++ .+|...+.
T Consensus 107 L~~L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~-----~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~ 177 (239)
T 2xwt_C 107 LKFLGIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMT-----SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN 177 (239)
T ss_dssp CCEEEEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCC-----EECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT
T ss_pred CCEEeCCCCCCcc-ccc--cccccccccccEEECCCCcchh-----hcCcccccchhcceeEEEcCCCCCc-ccCHhhcC
Confidence 8888888888877 443 67777777 8888888 776 4443 477788888 8888888887 77764444
Q ss_pred CCCCCCEEECCCCC-CCcchhhhhhcCC-CCCcEEEccCcccccccCCCccccchhhh
Q 021196 256 NFTNLEELILDDSD-LHISQLLQSIASF-TSLKYLSMGFCTLTGALHGQGKLRVSEAF 311 (316)
Q Consensus 256 ~l~~L~~L~L~~n~-l~g~~ip~~l~~~-~~L~~L~l~~N~l~g~ip~~~~l~~L~~l 311 (316)
. ++|+.|++++|+ +++ ..+..+..+ ++|+.|++++|++++ +|. ..++.|+.|
T Consensus 178 ~-~~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~l~~-l~~-~~~~~L~~L 231 (239)
T 2xwt_C 178 G-TKLDAVYLNKNKYLTV-IDKDAFGGVYSGPSLLDVSQTSVTA-LPS-KGLEHLKEL 231 (239)
T ss_dssp T-CEEEEEECTTCTTCCE-ECTTTTTTCSBCCSEEECTTCCCCC-CCC-TTCTTCSEE
T ss_pred C-CCCCEEEcCCCCCccc-CCHHHhhccccCCcEEECCCCcccc-CCh-hHhccCcee
Confidence 4 778888888884 774 334567777 888888888888874 443 134444444
No 62
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=9.8e-25 Score=191.87 Aligned_cols=207 Identities=18% Similarity=0.102 Sum_probs=167.1
Q ss_pred cEEEEEcCCCCcccccccccccccc--cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccC
Q 021196 75 RVIKLDLRDTRNWESAEWYMNASLF--TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (316)
Q Consensus 75 ~v~~l~L~~~~~~~~~~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 152 (316)
+++.++++++.+.... +..+ ..+++|++|++++|.+++..+......+..+++|++|++++|.+.+..+..++
T Consensus 92 ~L~~L~l~~n~l~~~~-----~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 92 RLKELTLEDLKITGTM-----PPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp CCCEEEEESCCCBSCC-----CCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred ceeEEEeeCCEeccch-----hhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 4888899888774333 2334 78999999999999999866532222356899999999999999988889999
Q ss_pred CCCCCCEEEeeCcccccc--cC-cccccCCCCCCEEEcCCCcCCCc--cccccccCCCCCCEEEcCCccccccccchhhh
Q 021196 153 GLSSLRNLSLIGNRLIGS--ID-IKGLDSLGNLEELDMSDNAINNL--VIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ 227 (316)
Q Consensus 153 ~l~~L~~L~L~~n~l~g~--ip-~~~l~~l~~L~~L~L~~n~~~~~--~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~ 227 (316)
.+++|++|++++|++.+. ++ ...+..+++|++|++++|+++.. .+...+..+++|++|++++|.++ + ..|+
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~-~---~~p~ 242 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLR-A---TVNP 242 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCC-C---CCCS
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCC-c---cchh
Confidence 999999999999998753 32 22347899999999999999752 22212468899999999999998 5 4477
Q ss_pred hcCCC---CCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccccc
Q 021196 228 SIGSL---PSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 297 (316)
Q Consensus 228 ~~~~l---~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g 297 (316)
.+..+ ++|++|++++|+++ .+|. .+. ++|++|++++|++++ +|. +..+++|+.|++++|+++.
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N~l~-~lp~-~~~--~~L~~L~Ls~N~l~~--~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFAGLE-QVPK-GLP--AKLRVLDLSSNRLNR--APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSSCCCCTTCCCEECCSSCCC-SCCS-CCC--SCCSCEECCSCCCCS--CCC-TTSCCCCSCEECSSTTTSC
T ss_pred hHHhccCcCcCCEEECCCCCCC-chhh-hhc--CCCCEEECCCCcCCC--Cch-hhhCCCccEEECcCCCCCC
Confidence 77776 69999999999999 7887 453 899999999999996 454 6788999999999999875
No 63
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=3.1e-23 Score=176.83 Aligned_cols=183 Identities=20% Similarity=0.274 Sum_probs=157.4
Q ss_pred CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCC
Q 021196 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL 182 (316)
Q Consensus 103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L 182 (316)
...++++++++.++. +|.. +. +.+++|++++|.+++..+..+.++++|++|++++|.+.+..+ ..+..+++|
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~----~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 85 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSG----IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA-GVFDDLTEL 85 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSC----CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred CCCeEEecCCCCccc-cCCC----CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH-hHhccCCcC
Confidence 356789999998874 4432 32 689999999999998888889999999999999999986544 478999999
Q ss_pred CEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh-hcCCCCCCCEEECCCCCCCCccchhhhcCCCCCC
Q 021196 183 EELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ-SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLE 261 (316)
Q Consensus 183 ~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~ 261 (316)
++|++++|++++..+. .+..+++|++|++++|.++ .+|. .+..+++|++|++++|+++ .+|...+..+++|+
T Consensus 86 ~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 86 GTLGLANNQLASLPLG-VFDHLTQLDKLYLGGNQLK-----SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQ 158 (251)
T ss_dssp CEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred CEEECCCCcccccChh-HhcccCCCCEEEcCCCcCC-----CcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCC
Confidence 9999999999985444 8899999999999999998 4544 5788999999999999999 56655799999999
Q ss_pred EEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC
Q 021196 262 ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG 301 (316)
Q Consensus 262 ~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~ 301 (316)
+|++++|++++ ..+..+..+++|+.|++++|++.+....
T Consensus 159 ~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 159 TLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp EEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred EEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence 99999999997 6666899999999999999999987444
No 64
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=5.1e-24 Score=189.05 Aligned_cols=216 Identities=19% Similarity=0.252 Sum_probs=172.4
Q ss_pred EEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCC
Q 021196 76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155 (316)
Q Consensus 76 v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 155 (316)
++.++++++++...+. .+ .++|++|++++|.+.+..+. .+.++++|++|++++|.+++..|..+++++
T Consensus 35 l~~l~~~~~~l~~ip~------~~--~~~l~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPK------EI--SPDTTLLDLQNNDISELRKD----DFKGLQHLYALVLVNNKISKIHEKAFSPLR 102 (332)
T ss_dssp TTEEECCSSCCSSCCS------CC--CTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECGGGSTTCT
T ss_pred CCEEECCCCCccccCC------CC--CCCCeEEECCCCcCCccCHh----HhhCCCCCcEEECCCCccCccCHhHhhCcC
Confidence 4568888887643221 12 36899999999999876554 389999999999999999988899999999
Q ss_pred CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCC---
Q 021196 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSL--- 232 (316)
Q Consensus 156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l--- 232 (316)
+|++|++++|++. .+|. .+. ++|++|++++|.+++. ++..+..+++|++|++++|.++.. +..+..+..+
T Consensus 103 ~L~~L~L~~n~l~-~l~~-~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~L~ 175 (332)
T 2ft3_A 103 KLQKLYISKNHLV-EIPP-NLP--SSLVELRIHDNRIRKV-PKGVFSGLRNMNCIEMGGNPLENS--GFEPGAFDGLKLN 175 (332)
T ss_dssp TCCEEECCSSCCC-SCCS-SCC--TTCCEEECCSSCCCCC-CSGGGSSCSSCCEEECCSCCCBGG--GSCTTSSCSCCCS
T ss_pred CCCEEECCCCcCC-ccCc-ccc--ccCCEEECCCCccCcc-CHhHhCCCccCCEEECCCCccccC--CCCcccccCCccC
Confidence 9999999999998 6776 443 7999999999999974 444799999999999999998621 0223333333
Q ss_pred -----------------CCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccc
Q 021196 233 -----------------PSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL 295 (316)
Q Consensus 233 -----------------~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l 295 (316)
++|++|++++|.+++..+. .+..+++|++|++++|.+++ ..+..+..+++|+.|++++|++
T Consensus 176 ~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 176 YLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp CCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCC
T ss_pred EEECcCCCCCccCccccCCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcC
Confidence 4677777777777744433 78889999999999999987 6666889999999999999999
Q ss_pred ccccCC-Cccccchhhhhh
Q 021196 296 TGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 296 ~g~ip~-~~~l~~L~~l~i 313 (316)
+ .+|. ++.++.|+.|++
T Consensus 254 ~-~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 254 S-RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp C-BCCTTGGGCTTCCEEEC
T ss_pred e-ecChhhhcCccCCEEEC
Confidence 8 6777 888888888765
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=6.5e-24 Score=201.38 Aligned_cols=217 Identities=22% Similarity=0.228 Sum_probs=189.1
Q ss_pred cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccc--ccccC
Q 021196 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI--FSSLG 152 (316)
Q Consensus 75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~--p~~~~ 152 (316)
+++.++++++.+...+ . ..+++|++|++++|.+.+..+ ...+++|++|++++|.+++.. |..+.
T Consensus 305 ~L~~L~l~~n~~~~l~-----~---~~l~~L~~L~l~~n~~~~~~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 370 (570)
T 2z63_A 305 GWQHLELVNCKFGQFP-----T---LKLKSLKRLTFTSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCCSQSDF 370 (570)
T ss_dssp CCSEEEEESCBCSSCC-----B---CBCSSCCEEEEESCBSCCBCC------CCBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred CccEEeeccCcccccC-----c---ccccccCEEeCcCCccccccc------cccCCCCCEEeCcCCccCcccccccccc
Confidence 6778899888764221 1 468899999999999877665 367899999999999998654 77888
Q ss_pred CCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCC
Q 021196 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSL 232 (316)
Q Consensus 153 ~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l 232 (316)
.+++|++|++++|.+.+ +++ .+..+++|++|++++|.+.+..+...+..+++|++|++++|.++ + ..|..+..+
T Consensus 371 ~~~~L~~L~l~~n~l~~-~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~---~~~~~~~~l 444 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVIT-MSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-V---AFNGIFNGL 444 (570)
T ss_dssp TCSCCCEEECCSCSEEE-EEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE-E---CCTTTTTTC
T ss_pred ccCccCEEECCCCcccc-ccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc-c---cchhhhhcC
Confidence 99999999999999884 565 48999999999999999998766557899999999999999998 5 567789999
Q ss_pred CCCCEEECCCCCCC-CccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhh
Q 021196 233 PSLKTLYLSSTNFK-GTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEA 310 (316)
Q Consensus 233 ~~L~~L~l~~n~l~-g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~ 310 (316)
++|++|++++|.++ +.+|. .+..+++|++|++++|++++ ..|..+..+++|++|++++|++++.+|. ++.+++|+.
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp TTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CcCcEEECcCCcCccccchh-hhhcccCCCEEECCCCcccc-CChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence 99999999999997 56886 89999999999999999998 7789999999999999999999998887 889999988
Q ss_pred hhh
Q 021196 311 FMI 313 (316)
Q Consensus 311 l~i 313 (316)
|++
T Consensus 523 L~l 525 (570)
T 2z63_A 523 IWL 525 (570)
T ss_dssp EEC
T ss_pred EEe
Confidence 765
No 66
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=7.7e-23 Score=182.35 Aligned_cols=192 Identities=21% Similarity=0.322 Sum_probs=136.1
Q ss_pred ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccc---------------------ccccCCCCCC
Q 021196 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI---------------------FSSLGGLSSL 157 (316)
Q Consensus 99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~---------------------p~~~~~l~~L 157 (316)
+..+++|++|++++|.....++. +..+++|++|++++|.+.+.. +. +..+++|
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 201 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSL 201 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGG-----GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTC
T ss_pred hccCCceeEEECCCCCCcccccc-----hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCcc
Confidence 55666677777766654443332 444445555555544444222 11 4445555
Q ss_pred CEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCE
Q 021196 158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT 237 (316)
Q Consensus 158 ~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~ 237 (316)
++|++++|.+.+ ++ .+..+++|++|++++|.+++. + .+..+++|++|++++|.++ .+ +.+..+++|++
T Consensus 202 ~~L~l~~n~l~~-~~--~~~~~~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~l~~n~l~-----~~-~~~~~l~~L~~ 269 (347)
T 4fmz_A 202 HYFTAYVNQITD-IT--PVANMTRLNSLKIGNNKITDL-S--PLANLSQLTWLEIGTNQIS-----DI-NAVKDLTKLKM 269 (347)
T ss_dssp CEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCC-----CC-GGGTTCTTCCE
T ss_pred ceeecccCCCCC-Cc--hhhcCCcCCEEEccCCccCCC-c--chhcCCCCCEEECCCCccC-----CC-hhHhcCCCcCE
Confidence 555555555442 22 256777888888888888764 2 2678888888888888887 33 35788889999
Q ss_pred EECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196 238 LYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI 313 (316)
Q Consensus 238 L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i 313 (316)
|++++|.+++ ++ .+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++..| +..++.|++|++
T Consensus 270 L~l~~n~l~~-~~--~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 340 (347)
T 4fmz_A 270 LNVGSNQISD-IS--VLNNLSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADF 340 (347)
T ss_dssp EECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCG-GGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESS
T ss_pred EEccCCccCC-Ch--hhcCCCCCCEEECcCCcCCC-cChhHhhccccCCEEEccCCccccccC-hhhhhccceeeh
Confidence 9999999884 43 57889999999999999988 788889999999999999999998777 788888888875
No 67
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.90 E-value=5.3e-24 Score=200.82 Aligned_cols=207 Identities=14% Similarity=0.140 Sum_probs=169.7
Q ss_pred CCCCCCCCCCCCC-----cccce-EEcCCCCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCcccccc
Q 021196 50 NCWVDDENYSDCC-----QWERV-ECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEG 123 (316)
Q Consensus 50 ~~W~~~~~~~~~c-----~w~gv-~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 123 (316)
..|. ...++| .|.|+ .|. ..+++.|+++++++.+.+ .. + +++|++|++++|.++ .+|
T Consensus 34 ~~W~---~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~lp-----~~-l--~~~L~~L~Ls~N~l~-~ip--- 96 (571)
T 3cvr_A 34 DKWE---KQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLP-----DN-L--PPQITVLEITQNALI-SLP--- 96 (571)
T ss_dssp HHHH---TTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSCCC-----SC-C--CTTCSEEECCSSCCS-CCC---
T ss_pred HHHh---ccCCccccccchhhhccccc--cCCccEEEeCCCCCCccC-----Hh-H--cCCCCEEECcCCCCc-ccc---
Confidence 4563 355667 79999 785 358999999999875422 22 2 378999999999998 455
Q ss_pred ccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccC
Q 021196 124 LDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRG 203 (316)
Q Consensus 124 ~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~ 203 (316)
..+++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .
T Consensus 97 ----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~----~ 158 (571)
T 3cvr_A 97 ----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE----L 158 (571)
T ss_dssp ----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC----C
T ss_pred ----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC----c
Confidence 236899999999999997 777 665 99999999999986 775 68899999999999998 554 5
Q ss_pred CCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCC-------CEEECCCCCCCcchhh
Q 021196 204 LRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNL-------EELILDDSDLHISQLL 276 (316)
Q Consensus 204 l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L-------~~L~L~~n~l~g~~ip 276 (316)
+++|++|++++|.++ .+|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.|+ .+|
T Consensus 159 l~~L~~L~Ls~N~L~-----~lp~-l~--~~L~~L~Ls~N~L~-~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~--~lp 223 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLT-----FLPE-LP--ESLEALDVSTNLLE-SLPA--VPV--RNHHSEETEIFFRCRENRIT--HIP 223 (571)
T ss_dssp CTTCCEEECCSSCCS-----CCCC-CC--TTCCEEECCSSCCS-SCCC--CC----------CCEEEECCSSCCC--CCC
T ss_pred CCCcCEEECCCCCCC-----Ccch-hh--CCCCEEECcCCCCC-chhh--HHH--hhhcccccceEEecCCCcce--ecC
Confidence 789999999999998 6776 55 89999999999999 7886 443 67 99999999998 699
Q ss_pred hhhcCCCCCcEEEccCcccccccCC-Ccccc
Q 021196 277 QSIASFTSLKYLSMGFCTLTGALHG-QGKLR 306 (316)
Q Consensus 277 ~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~ 306 (316)
..+..+++|+.|+|++|+++|.+|. ++.++
T Consensus 224 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 224 ENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp GGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 9999999999999999999999887 55543
No 68
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=9.5e-23 Score=189.09 Aligned_cols=204 Identities=25% Similarity=0.376 Sum_probs=112.6
Q ss_pred cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (316)
Q Consensus 75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 154 (316)
+++.++++++.+... ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+.+ + ..+..+
T Consensus 178 ~L~~L~l~~n~l~~~-------~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~-~-~~l~~l 242 (466)
T 1o6v_A 178 TLERLDISSNKVSDI-------SVLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKD-I-GTLASL 242 (466)
T ss_dssp TCCEEECCSSCCCCC-------GGGGGCTTCSEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCC-C-GGGGGC
T ss_pred CCCEEECcCCcCCCC-------hhhccCCCCCEEEecCCccccccc------ccccCCCCEEECCCCCccc-c-hhhhcC
Confidence 456666666655321 124556666666666666655433 3445556666666665553 2 234555
Q ss_pred CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCC
Q 021196 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPS 234 (316)
Q Consensus 155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~ 234 (316)
++|++|++++|.+.+. + .+..+++|++|++++|.+++.. .+..+++|+.|++++|.++ .++. +..+++
T Consensus 243 ~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~-----~~~~-~~~l~~ 310 (466)
T 1o6v_A 243 TNLTDLDLANNQISNL-A--PLSGLTKLTELKLGANQISNIS---PLAGLTALTNLELNENQLE-----DISP-ISNLKN 310 (466)
T ss_dssp TTCSEEECCSSCCCCC-G--GGTTCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCS-----CCGG-GGGCTT
T ss_pred CCCCEEECCCCccccc-h--hhhcCCCCCEEECCCCccCccc---cccCCCccCeEEcCCCccc-----Cchh-hcCCCC
Confidence 6666666666665532 2 1455566666666666665531 2455566666666666655 2222 455566
Q ss_pred CCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhh
Q 021196 235 LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFM 312 (316)
Q Consensus 235 L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~ 312 (316)
|+.|++++|++++..| +..+++|+.|++++|++++ + ..+..+++|+.|++++|++++.+| +..++.|+.|+
T Consensus 311 L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 381 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD--V-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLG 381 (466)
T ss_dssp CSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEE
T ss_pred CCEEECcCCcCCCchh---hccCccCCEeECCCCccCC--c-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEe
Confidence 6666666666654332 3455666666666666654 2 245566666666666666665555 45555555544
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.3e-22 Score=178.12 Aligned_cols=192 Identities=23% Similarity=0.313 Sum_probs=164.5
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 153 (316)
.+++.++++++.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..
T Consensus 41 ~~L~~L~l~~~~i~~l-------~~~~~l~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~L~~n~l~~-~~-~~~~ 105 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-------EGVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKN-VS-AIAG 105 (308)
T ss_dssp HTCCEEECTTSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSC-CG-GGTT
T ss_pred CCcCEEEeeCCCccCc-------hhhhccCCCCEEEccCCcCCCChh------HccCCCCCEEEccCCcCCC-ch-hhcC
Confidence 4688999999877432 246789999999999999976543 7899999999999999985 33 6889
Q ss_pred CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCC
Q 021196 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLP 233 (316)
Q Consensus 154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~ 233 (316)
+++|++|++++|++++ ++ .+..+++|++|++++|.+++. + .+..+++|++|++++|.++ .++. +..++
T Consensus 106 l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~-----~~~~-l~~l~ 173 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITD-VT--PLAGLSNLQVLYLDLNQITNI-S--PLAGLTNLQYLSIGNAQVS-----DLTP-LANLS 173 (308)
T ss_dssp CTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECCSSCCCCC-G--GGGGCTTCCEEECCSSCCC-----CCGG-GTTCT
T ss_pred CCCCCEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCcC-c--cccCCCCccEEEccCCcCC-----CChh-hcCCC
Confidence 9999999999999985 55 489999999999999999885 2 3788999999999999998 4555 88999
Q ss_pred CCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccc
Q 021196 234 SLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA 298 (316)
Q Consensus 234 ~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ 298 (316)
+|+.|++++|.+++ ++. +..+++|++|++++|++++ ++ .+..+++|+.|++++|++++.
T Consensus 174 ~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~L~~N~l~~--~~-~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 174 KLTTLKADDNKISD-ISP--LASLPNLIEVHLKNNQISD--VS-PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp TCCEEECCSSCCCC-CGG--GGGCTTCCEEECTTSCCCB--CG-GGTTCTTCCEEEEEEEEEECC
T ss_pred CCCEEECCCCccCc-Chh--hcCCCCCCEEEccCCccCc--cc-cccCCCCCCEEEccCCeeecC
Confidence 99999999999984 543 7889999999999999986 44 389999999999999999863
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.3e-23 Score=195.92 Aligned_cols=196 Identities=20% Similarity=0.190 Sum_probs=147.6
Q ss_pred cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcc-----
Q 021196 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIK----- 174 (316)
Q Consensus 100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~----- 174 (316)
..+++|++|+|++|.+++..|. .+..+++|++|++++|.+++..| +..+++|++|++++|.+++ +|..
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLVGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGG----GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EEECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHH----HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CCCCCCcCE
Confidence 3456899999999999987664 38999999999999999987665 8899999999999998864 2210
Q ss_pred -----------cccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcC-CCCCCCEEECCC
Q 021196 175 -----------GLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIG-SLPSLKTLYLSS 242 (316)
Q Consensus 175 -----------~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~-~l~~L~~L~l~~ 242 (316)
....+++|++|++++|.+++..|. .+..+++|++|++++|.++ + ..|..+. .+++|+.|++++
T Consensus 104 L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-~---~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEID-T---VNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp EECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCC-E---EEGGGGGGGTTTCCEEECTT
T ss_pred EECcCCcCCCCCccccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCC-C---cChHHHhhhCCcccEEecCC
Confidence 112345677777777777775555 6777778888888888877 4 4555554 677888888888
Q ss_pred CCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhhh
Q 021196 243 TNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 243 n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
|.+++ +|. ...+++|+.|++++|.+++ +|..+..+++|+.|++++|++++ +|. ++.++.|+.|++
T Consensus 179 N~l~~-~~~--~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 179 NFIYD-VKG--QVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL 244 (487)
T ss_dssp SCCCE-EEC--CCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred Ccccc-ccc--cccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence 88774 332 3357888888888888885 55568888888888888888886 455 777777777654
No 71
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=6.6e-25 Score=198.76 Aligned_cols=235 Identities=19% Similarity=0.200 Sum_probs=113.5
Q ss_pred cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCc---cCCccccc---cccccCCCCCCcEEECCCCCCCc---
Q 021196 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNN---IAGCVENE---GLDTLSRLNNLKFLYLDYNHFNN--- 145 (316)
Q Consensus 75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~---~~~~~~~~---~~~~l~~l~~L~~L~L~~n~l~~--- 145 (316)
+++.|+|+++.+...+...+ ...+..+++|++|+|++|. +++.+|.. ....+..+++|++|++++|.+++
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l-~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWL-SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp CCCEEECTTSEECHHHHHHH-HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CccEEECCCCCCCHHHHHHH-HHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 45666666665533222111 1224456666666666642 22333321 01223556666666666666655
Q ss_pred -ccccccCCCCCCCEEEeeCcccccccCc---ccccCC---------CCCCEEEcCCCcCCC-cccc--ccccCCCCCCE
Q 021196 146 -SIFSSLGGLSSLRNLSLIGNRLIGSIDI---KGLDSL---------GNLEELDMSDNAINN-LVIP--KDYRGLRKLNT 209 (316)
Q Consensus 146 -~~p~~~~~l~~L~~L~L~~n~l~g~ip~---~~l~~l---------~~L~~L~L~~n~~~~-~~p~--~~~~~l~~L~~ 209 (316)
.+|..+..+++|++|+|++|.+++..+. ..+..+ ++|++|++++|+++. .++. ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 3555555566666666666665422111 012222 556666666666552 2221 13444555666
Q ss_pred EEcCCccccccccchhhh-hcCCCCCCCEEECCCCCCC----CccchhhhcCCCCCCEEECCCCCCCcch----hhhhhc
Q 021196 210 LYLGGTEIAMIDGSKVLQ-SIGSLPSLKTLYLSSTNFK----GTVVNQELHNFTNLEELILDDSDLHISQ----LLQSIA 280 (316)
Q Consensus 210 L~l~~n~l~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~----g~~p~~~~~~l~~L~~L~L~~n~l~g~~----ip~~l~ 280 (316)
|++++|.++..+...+.+ .+..+++|++|++++|.++ +.+|. .+..+++|++|+|++|.+++ . +|..+.
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~ 269 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSA-RGAAAVVDAFS 269 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCH-HHHHHHHHHHH
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCch-hhHHHHHHHHh
Confidence 666655554111111222 4555555555555555553 33443 45555555555555555554 2 344442
Q ss_pred C--CCCCcEEEccCccccc----ccCC-C-ccccchhhhh
Q 021196 281 S--FTSLKYLSMGFCTLTG----ALHG-Q-GKLRVSEAFM 312 (316)
Q Consensus 281 ~--~~~L~~L~l~~N~l~g----~ip~-~-~~l~~L~~l~ 312 (316)
. +++|+.|+|++|++++ .+|. + .++++|+.|+
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 2 5555555555555555 3444 2 4445555444
No 72
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.8e-22 Score=186.64 Aligned_cols=177 Identities=21% Similarity=0.203 Sum_probs=111.4
Q ss_pred ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (316)
Q Consensus 99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~ 178 (316)
++.+++|++|++++|.+++. + ++++++|++|++++|.+++ +| ++.+++|++|++++|++++ ++ +..
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~-~------~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~ 146 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL-D------VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSH 146 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC-C------CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTT
T ss_pred cccCCCCCEEECcCCCCcee-e------cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---ccc
Confidence 44555555555555555542 1 4555566666666665554 22 5555666666666666554 22 455
Q ss_pred CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCC
Q 021196 179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT 258 (316)
Q Consensus 179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~ 258 (316)
+++|++|++++|...+.+ .+..+++|++|++++|.++ .+| +..+++|+.|++++|.+++ + .++.++
T Consensus 147 l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~-----~l~--l~~l~~L~~L~l~~N~l~~-~---~l~~l~ 212 (457)
T 3bz5_A 147 NTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKIT-----ELD--VSQNKLLNRLNCDTNNITK-L---DLNQNI 212 (457)
T ss_dssp CTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCC-----CCC--CTTCTTCCEEECCSSCCSC-C---CCTTCT
T ss_pred CCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccc-----eec--cccCCCCCEEECcCCcCCe-e---ccccCC
Confidence 566666666666444433 3556677777777777776 344 6677777888888777774 3 266778
Q ss_pred CCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchh
Q 021196 259 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSE 309 (316)
Q Consensus 259 ~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~ 309 (316)
+|++|++++|++++ +| +..+++|+.|++++|++++..+ +.++.|+
T Consensus 213 ~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N~l~~~~~--~~l~~L~ 257 (457)
T 3bz5_A 213 QLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSVNPLTELDV--STLSKLT 257 (457)
T ss_dssp TCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCCC--TTCTTCC
T ss_pred CCCEEECcCCcccc--cC--ccccCCCCEEEeeCCcCCCcCH--HHCCCCC
Confidence 88888888888875 55 7778888888888888887543 3444444
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=2.7e-23 Score=196.34 Aligned_cols=220 Identities=22% Similarity=0.234 Sum_probs=178.7
Q ss_pred EEcCCCCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccc
Q 021196 68 ECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI 147 (316)
Q Consensus 68 ~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 147 (316)
.|.. ..| .+.+++++...+. .+ .++|++|++++|.+++..|.. +.++++|++|++++|.+++..
T Consensus 3 ~C~~--~~~--c~~~~~~l~~ip~------~~--~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~ 66 (549)
T 2z81_A 3 SCDA--SGV--CDGRSRSFTSIPS------GL--TAAMKSLDLSFNKITYIGHGD----LRACANLQVLILKSSRINTIE 66 (549)
T ss_dssp EECT--TSE--EECTTSCCSSCCS------CC--CTTCCEEECCSSCCCEECSST----TSSCTTCCEEECTTSCCCEEC
T ss_pred cCCC--Cce--EECCCCccccccc------cC--CCCccEEECcCCccCccChhh----hhcCCcccEEECCCCCcCccC
Confidence 5742 334 6788777643322 12 278999999999998876653 899999999999999999888
Q ss_pred ccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCc-cccccccCCCCCCEEEcCCccccccccchhh
Q 021196 148 FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL 226 (316)
Q Consensus 148 p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~-~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p 226 (316)
|..|+.+++|++|++++|++.+. ++..++++++|++|++++|.+++. .|. .+.++++|++|++++|.+. + .+|
T Consensus 67 ~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~-~---~~~ 140 (549)
T 2z81_A 67 GDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETF-S---EIR 140 (549)
T ss_dssp TTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSC-C---EEC
T ss_pred hhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccc-c---ccC
Confidence 88999999999999999999864 444799999999999999999873 455 8999999999999999854 4 565
Q ss_pred -hhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhh-cCCCCCcEEEccCccccccc----C
Q 021196 227 -QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMGFCTLTGAL----H 300 (316)
Q Consensus 227 -~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l-~~~~~L~~L~l~~N~l~g~i----p 300 (316)
..+.++++|++|++++|.+++.+|. .+..+++|++|++++|.+. .+|..+ ..+++|++|++++|++++.. +
T Consensus 141 ~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 217 (549)
T 2z81_A 141 RIDFAGLTSLNELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESA--FLLEIFADILSSVRYLELRDTNLARFQFSPLP 217 (549)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBST--THHHHHHHSTTTBSEEEEESCBCTTCCCCCCS
T ss_pred HhhhhcccccCeeeccCCcccccChh-hhhccccCceEecccCccc--ccchhhHhhcccccEEEccCCccccccccccc
Confidence 5789999999999999999987876 8999999999999999986 566554 57899999999999998842 2
Q ss_pred CCccccchhhhh
Q 021196 301 GQGKLRVSEAFM 312 (316)
Q Consensus 301 ~~~~l~~L~~l~ 312 (316)
....++.|+.|+
T Consensus 218 ~~~~~~~L~~L~ 229 (549)
T 2z81_A 218 VDEVSSPMKKLA 229 (549)
T ss_dssp SCCCCCCCCEEE
T ss_pred hhhhhhccccee
Confidence 234455555443
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=1.7e-23 Score=184.54 Aligned_cols=209 Identities=21% Similarity=0.183 Sum_probs=168.5
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 153 (316)
.+++.|+++++.+... .+..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. + .
T Consensus 34 ~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~l-~----~ 97 (317)
T 3o53_A 34 WNVKELDLSGNPLSQI-----SAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQEL-L----V 97 (317)
T ss_dssp GGCSEEECTTSCCCCC-----CHHHHTTCTTCCEEECTTSCCEEEEE------ETTCTTCCEEECCSSEEEEE-E----E
T ss_pred CCCCEEECcCCccCcC-----CHHHhhCCCcCCEEECCCCcCCcchh------hhhcCCCCEEECcCCccccc-c----C
Confidence 3688899998877432 23457788899999999998876554 78889999999999988742 2 3
Q ss_pred CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhc-CCC
Q 021196 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI-GSL 232 (316)
Q Consensus 154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~-~~l 232 (316)
.++|++|++++|++++. +. ..+++|++|++++|++++..+. .+..+++|++|++++|.++ + ..+..+ ..+
T Consensus 98 ~~~L~~L~l~~n~l~~~-~~---~~~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-~---~~~~~~~~~l 168 (317)
T 3o53_A 98 GPSIETLHAANNNISRV-SC---SRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEID-T---VNFAELAASS 168 (317)
T ss_dssp CTTCCEEECCSSCCSEE-EE---CCCSSCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTTSCCC-E---EEGGGGGGGT
T ss_pred CCCcCEEECCCCccCCc-Cc---cccCCCCEEECCCCCCCCccch-hhhccCCCCEEECCCCCCC-c---ccHHHHhhcc
Confidence 37899999999988753 33 3467899999999999986555 8888999999999999998 4 334444 478
Q ss_pred CCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhh
Q 021196 233 PSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAF 311 (316)
Q Consensus 233 ~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l 311 (316)
++|++|++++|.++ .++. ...+++|++|++++|++++ +|..+..+++|+.|++++|++++ +|. +..++.|+.|
T Consensus 169 ~~L~~L~L~~N~l~-~~~~--~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L 242 (317)
T 3o53_A 169 DTLEHLNLQYNFIY-DVKG--QVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHF 242 (317)
T ss_dssp TTCCEEECTTSCCC-EEEC--CCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEE
T ss_pred CcCCEEECCCCcCc-cccc--ccccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEE
Confidence 99999999999998 4553 3458999999999999985 66679999999999999999995 666 8889999887
Q ss_pred hh
Q 021196 312 MI 313 (316)
Q Consensus 312 ~i 313 (316)
++
T Consensus 243 ~l 244 (317)
T 3o53_A 243 DL 244 (317)
T ss_dssp EC
T ss_pred Ec
Confidence 65
No 75
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.90 E-value=3.2e-23 Score=171.60 Aligned_cols=199 Identities=22% Similarity=0.221 Sum_probs=135.3
Q ss_pred CCCCCcccceEEcCCCCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEE
Q 021196 58 YSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLY 137 (316)
Q Consensus 58 ~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~ 137 (316)
....|.|.+|.|+... ++++ +. .-.++|++|++++|.+++..+. .+..+++|++|+
T Consensus 3 ~~C~C~~~~v~c~~~~--l~~~----------------p~--~~~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~ 58 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQG--RTSV----------------PT--GIPAQTTYLDLETNSLKSLPNG----VFDELTSLTQLY 58 (208)
T ss_dssp TTCEEETTEEECCSSC--CSSC----------------CS--CCCTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEE
T ss_pred CCCEECCCEEEecCCC--ccCC----------------CC--CCCCCCcEEEcCCCccCcCChh----hhcccccCcEEE
Confidence 3455899999996421 1111 11 1235788889998888765443 367888888888
Q ss_pred CCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccc
Q 021196 138 LDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEI 217 (316)
Q Consensus 138 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l 217 (316)
+++|.+++..+..+..+++|++|++++|+++ .+|+..+..+++|++|++++|++++..+. .+..+++|++|++++|.+
T Consensus 59 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 59 LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDG-VFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCC
T ss_pred CCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHh-HhccCCcCCEEECCCCcc
Confidence 8888888655556678888888888888877 34544677888888888888888764333 677777888888888877
Q ss_pred cccccchhh-hhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196 218 AMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296 (316)
Q Consensus 218 ~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~ 296 (316)
+ .++ ..+..+++|++|++++|.+.+ .+++|+.|+++.|+++| .+|..++.++. ++..|...
T Consensus 137 ~-----~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g-~ip~~~~~l~~----~~~~C~~~ 198 (208)
T 2o6s_A 137 K-----SVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSG-VVRNSAGSVAP----DSAKCSGS 198 (208)
T ss_dssp S-----CCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTT-TBBCTTSSBCT----TCSBBTTT
T ss_pred c-----eeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCc-eeeccCccccC----CccccccC
Confidence 6 333 346677777888887776654 23467777777777777 77777766554 44455444
Q ss_pred cccC
Q 021196 297 GALH 300 (316)
Q Consensus 297 g~ip 300 (316)
|..+
T Consensus 199 ~~~~ 202 (208)
T 2o6s_A 199 GKPV 202 (208)
T ss_dssp CCBG
T ss_pred CCcc
Confidence 4433
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=2.2e-23 Score=176.28 Aligned_cols=197 Identities=15% Similarity=0.173 Sum_probs=166.0
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCc-cCCccccccccccCCCCCCcEEECCC-CCCCccccccc
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNN-IAGCVENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSSL 151 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~ 151 (316)
..++.++++++.+... .+..|..+++|++|++++|. +++..+. .+.++++|++|++++ |.+++..+..|
T Consensus 31 ~~l~~L~l~~n~l~~i-----~~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTI-----PSHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp TTCCEEEEESCCCSEE-----CTTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CcccEEEEeCCcceEE-----CHHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4789999999987532 34568889999999999997 6554432 388999999999998 99997666788
Q ss_pred CCCCCCCEEEeeCcccccccCcccccCCCCCC---EEEcCCC-cCCCccccccccCCCCCC-EEEcCCccccccccchhh
Q 021196 152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE---ELDMSDN-AINNLVIPKDYRGLRKLN-TLYLGGTEIAMIDGSKVL 226 (316)
Q Consensus 152 ~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~---~L~L~~n-~~~~~~p~~~~~~l~~L~-~L~l~~n~l~~~~~~~~p 226 (316)
.++++|++|++++|.+++ +|. +..+++|+ +|++++| .+++. ++..+..+++|+ +|++++|.++ .+|
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i-~~~~~~~l~~L~~~L~l~~n~l~-----~i~ 172 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSI-PVNAFQGLCNETLTLKLYNNGFT-----SVQ 172 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEE-CTTTTTTTBSSEEEEECCSCCCC-----EEC
T ss_pred CCCCCCCEEeCCCCCCcc-ccc--cccccccccccEEECCCCcchhhc-CcccccchhcceeEEEcCCCCCc-----ccC
Confidence 999999999999999985 774 88888888 9999999 88874 554799999999 9999999997 677
Q ss_pred hhcCCCCCCCEEECCCCC-CCCccchhhhcCC-CCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCc
Q 021196 227 QSIGSLPSLKTLYLSSTN-FKGTVVNQELHNF-TNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFC 293 (316)
Q Consensus 227 ~~~~~l~~L~~L~l~~n~-l~g~~p~~~~~~l-~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N 293 (316)
......++|+.|++++|+ ++ .+|...+..+ ++|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 173 ~~~~~~~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~--l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 173 GYAFNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTA--LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTTTTTCEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCC--CCCT--TCTTCSEEECTTC
T ss_pred HhhcCCCCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCcccc--CChh--HhccCceeeccCc
Confidence 655455899999999995 88 6776688899 999999999999984 6654 7889999999886
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.3e-22 Score=178.08 Aligned_cols=188 Identities=21% Similarity=0.339 Sum_probs=161.7
Q ss_pred ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (316)
Q Consensus 99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~ 178 (316)
...+++|++|++++|.+.. ++. +..+++|++|++++|.+++.. . +..+++|++|++++|.+.+ ++ .+..
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~~-----~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~-~~--~~~~ 105 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IEG-----VQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKN-VS--AIAG 105 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CTT-----GGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSC-CG--GGTT
T ss_pred HHHcCCcCEEEeeCCCccC-chh-----hhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCC-ch--hhcC
Confidence 3457899999999999875 332 788999999999999998644 4 8999999999999999875 44 6899
Q ss_pred CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCC
Q 021196 179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT 258 (316)
Q Consensus 179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~ 258 (316)
+++|++|++++|.+++. + .+..+++|++|++++|.++ .++. +..+++|+.|++++|.+++ ++. +..++
T Consensus 106 l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~-----~~~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~l~ 173 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDV--T-PLAGLSNLQVLYLDLNQIT-----NISP-LAGLTNLQYLSIGNAQVSD-LTP--LANLS 173 (308)
T ss_dssp CTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECCSSCCC-----CCGG-GGGCTTCCEEECCSSCCCC-CGG--GTTCT
T ss_pred CCCCCEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccC-----cCcc-ccCCCCccEEEccCCcCCC-Chh--hcCCC
Confidence 99999999999999884 3 4889999999999999998 4444 8899999999999999984 553 88999
Q ss_pred CCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196 259 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI 313 (316)
Q Consensus 259 ~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i 313 (316)
+|+.|++++|.+++ ++. +..+++|++|++++|++++..| +..+++|+.|++
T Consensus 174 ~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l 224 (308)
T 1h6u_A 174 KLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTL 224 (308)
T ss_dssp TCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEE
T ss_pred CCCEEECCCCccCc--Chh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEc
Confidence 99999999999986 443 8899999999999999997654 788888888764
No 78
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=6.7e-22 Score=176.22 Aligned_cols=212 Identities=19% Similarity=0.338 Sum_probs=127.0
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 153 (316)
.+++.++++++.+..... +..+++|++|++++|.+++. + .+..+++|++|++++|.+.+. +. +..
T Consensus 66 ~~L~~L~l~~n~i~~~~~-------~~~l~~L~~L~L~~n~i~~~-~-----~~~~l~~L~~L~l~~n~i~~~-~~-~~~ 130 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISP-------LSNLVKLTNLYIGTNKITDI-S-----ALQNLTNLRELYLNEDNISDI-SP-LAN 130 (347)
T ss_dssp TTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCC-G-----GGTTCTTCSEEECTTSCCCCC-GG-GTT
T ss_pred CCccEEEccCCccccchh-------hhcCCcCCEEEccCCcccCc-h-----HHcCCCcCCEEECcCCcccCc-hh-hcc
Confidence 467778887776643221 56677777777777776652 2 267777777777777777643 32 566
Q ss_pred CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcccccccc-----------
Q 021196 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDG----------- 222 (316)
Q Consensus 154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~----------- 222 (316)
+++|++|++++|.....++ .+..+++|++|++++|.+.+.. .+..+++|++|++++|.+.....
T Consensus 131 l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 205 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFT 205 (347)
T ss_dssp CTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEE
T ss_pred CCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCch---hhccCCCCCEEEccCCcccccccccCCCccceee
Confidence 6666666666665443333 3555566666666665555431 24445555555555555441000
Q ss_pred ------chhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccc
Q 021196 223 ------SKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 296 (316)
Q Consensus 223 ------~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~ 296 (316)
..++. +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + ..+..+++|++|++++|+++
T Consensus 206 l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 206 AYVNQITDITP-VANMTRLNSLKIGNNKITD-LSP--LANLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp CCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCC
T ss_pred cccCCCCCCch-hhcCCcCCEEEccCCccCC-Ccc--hhcCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCCccC
Confidence 01121 5556667777777776663 332 6667777777777777764 3 35677777777777777776
Q ss_pred cccCCCccccchhhhhh
Q 021196 297 GALHGQGKLRVSEAFMI 313 (316)
Q Consensus 297 g~ip~~~~l~~L~~l~i 313 (316)
+ +|.+..+++|+.|++
T Consensus 279 ~-~~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 279 D-ISVLNNLSQLNSLFL 294 (347)
T ss_dssp C-CGGGGGCTTCSEEEC
T ss_pred C-ChhhcCCCCCCEEEC
Confidence 5 355666777776654
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=7.7e-23 Score=182.82 Aligned_cols=235 Identities=19% Similarity=0.172 Sum_probs=185.8
Q ss_pred CCCcccceEEcCC---------CCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCC
Q 021196 60 DCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL 130 (316)
Q Consensus 60 ~~c~w~gv~c~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l 130 (316)
..|+|..|.|+.. ...++.|+|++|++.. +++..|..+++|++|+|++|.+.+.++.. .|.++
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~-----i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L 78 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNL 78 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE-----ECTTSSTTCTTCCEEEEECCTTCCEECTT---SBCSC
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC-----cCHHHHcCCCCCCEEECcCCCCCCccChh---Hhhcc
Confidence 3478999999742 2468899999998753 33567899999999999999998877763 47888
Q ss_pred CCCcE-EECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCC-cCCCccccccccCCC-CC
Q 021196 131 NNLKF-LYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN-AINNLVIPKDYRGLR-KL 207 (316)
Q Consensus 131 ~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n-~~~~~~p~~~~~~l~-~L 207 (316)
+++++ +.+++|+++...|..|..+++|++|++++|++.+ +|+..+....++..+++.++ ++.. ++...+..+. .+
T Consensus 79 ~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l 156 (350)
T 4ay9_X 79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFES 156 (350)
T ss_dssp TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSC
T ss_pred hhhhhhhcccCCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhcccccccc-ccccchhhcchhh
Confidence 88776 5667799997778889999999999999999974 55446666777888998764 4544 5554676664 68
Q ss_pred CEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcE
Q 021196 208 NTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY 287 (316)
Q Consensus 208 ~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~ 287 (316)
+.|++++|.++ .+|.......+|+++++++++..+.+|.+.|..+++|++|++++|+++ .+|. ..+.+|+.
T Consensus 157 ~~L~L~~N~i~-----~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~--~lp~--~~~~~L~~ 227 (350)
T 4ay9_X 157 VILWLNKNGIQ-----EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH--SLPS--YGLENLKK 227 (350)
T ss_dssp EEEECCSSCCC-----EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC--CCCS--SSCTTCCE
T ss_pred hhhcccccccc-----CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC--ccCh--hhhccchH
Confidence 99999999998 788777777899999998654445899878899999999999999998 5775 34677888
Q ss_pred EEccCcccccccCCCccccchhhhhh
Q 021196 288 LSMGFCTLTGALHGQGKLRVSEAFMI 313 (316)
Q Consensus 288 L~l~~N~l~g~ip~~~~l~~L~~l~i 313 (316)
|.+.++.--..+|.+.++++|+.+++
T Consensus 228 L~~l~~~~l~~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 228 LRARSTYNLKKLPTLEKLVALMEASL 253 (350)
T ss_dssp EECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred hhhccCCCcCcCCCchhCcChhhCcC
Confidence 88877765668888888888877654
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=2.3e-23 Score=184.82 Aligned_cols=203 Identities=20% Similarity=0.185 Sum_probs=166.6
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCc-cccccccccCCCCCCcEEECCCCCCCcccccccC
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGC-VENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 152 (316)
.+++.++++++.+.... ..+..+++|++|++++|.+++. ++. .+..+++|++|++++|.+++..+..++
T Consensus 70 ~~l~~L~l~~n~l~~~~------~~~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~ 139 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPL------AEHFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLA 139 (336)
T ss_dssp TTCSEEECTTCEECSCC------CSCCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHT
T ss_pred ccceEEEcCCccccccc------hhhccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHh
Confidence 57889999998764322 2256789999999999998765 553 378899999999999999988999999
Q ss_pred CCCCCCEEEeeCc-ccccc-cCcccccCCCCCCEEEcCCC-cCCCc-cccccccCCC-CCCEEEcCCc--cccccccchh
Q 021196 153 GLSSLRNLSLIGN-RLIGS-IDIKGLDSLGNLEELDMSDN-AINNL-VIPKDYRGLR-KLNTLYLGGT--EIAMIDGSKV 225 (316)
Q Consensus 153 ~l~~L~~L~L~~n-~l~g~-ip~~~l~~l~~L~~L~L~~n-~~~~~-~p~~~~~~l~-~L~~L~l~~n--~l~~~~~~~~ 225 (316)
.+++|++|++++| .+++. ++. .+.++++|++|++++| .+++. ++. .+..++ +|++|++++| .++++ .+
T Consensus 140 ~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~~~~~~~---~l 214 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKS---DL 214 (336)
T ss_dssp TCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHH---HH
T ss_pred cCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCcccCCHH---HH
Confidence 9999999999999 67653 554 6788999999999999 88875 344 788899 9999999999 45433 78
Q ss_pred hhhcCCCCCCCEEECCCCC-CCCccchhhhcCCCCCCEEECCCCC-CCcchhhhhhcCCCCCcEEEccCc
Q 021196 226 LQSIGSLPSLKTLYLSSTN-FKGTVVNQELHNFTNLEELILDDSD-LHISQLLQSIASFTSLKYLSMGFC 293 (316)
Q Consensus 226 p~~~~~l~~L~~L~l~~n~-l~g~~p~~~~~~l~~L~~L~L~~n~-l~g~~ip~~l~~~~~L~~L~l~~N 293 (316)
|..+.++++|++|++++|. +++..+. .+..+++|++|++++|. +.. .....+.++++|+.|++++|
T Consensus 215 ~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 215 STLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIP-ETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTS
T ss_pred HHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCH-HHHHHHhcCCCCCEEeccCc
Confidence 8888899999999999999 7766666 78899999999999994 443 33346788999999999988
No 81
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=2.7e-22 Score=166.03 Aligned_cols=179 Identities=21% Similarity=0.284 Sum_probs=149.2
Q ss_pred cEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEE
Q 021196 106 ESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEEL 185 (316)
Q Consensus 106 ~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L 185 (316)
+.++.+++.++.. |. .-.++|++|++++|.+++..+..+..+++|++|++++|++. .+|+..+..+++|++|
T Consensus 10 ~~v~c~~~~l~~~-p~------~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L 81 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PT------GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYL 81 (208)
T ss_dssp TEEECCSSCCSSC-CS------CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CEEEecCCCccCC-CC------CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEE
Confidence 4567777766543 32 23568999999999999766667899999999999999998 4665578899999999
Q ss_pred EcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEE
Q 021196 186 DMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELI 264 (316)
Q Consensus 186 ~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~ 264 (316)
++++|++++. ++..+..+++|++|++++|.++ .++ ..+..+++|++|++++|.++ .+|...+..+++|++|+
T Consensus 82 ~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 82 NLSTNQLQSL-PNGVFDKLTQLKELALNTNQLQ-----SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp ECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEE
T ss_pred ECCCCcCCcc-CHhHhcCccCCCEEEcCCCcCc-----ccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEE
Confidence 9999999974 4437899999999999999998 444 45789999999999999999 45655789999999999
Q ss_pred CCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccc
Q 021196 265 LDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRV 307 (316)
Q Consensus 265 L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~ 307 (316)
+++|.+.+ .+++|++|+++.|+++|.+|. ++.++.
T Consensus 155 l~~N~~~~--------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 155 LHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCSCCBCC--------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ecCCCeec--------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 99999886 345899999999999999998 666653
No 82
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=4.8e-22 Score=183.74 Aligned_cols=201 Identities=18% Similarity=0.133 Sum_probs=139.4
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 153 (316)
.+++.+++++|.+... .++.+++|++|++++|.+++. + ++.+++|++|++++|.+++ + .++.
T Consensus 85 ~~L~~L~Ls~N~l~~~--------~~~~l~~L~~L~L~~N~l~~l-~------~~~l~~L~~L~l~~N~l~~-l--~l~~ 146 (457)
T 3bz5_A 85 TNLTYLACDSNKLTNL--------DVTPLTKLTYLNCDTNKLTKL-D------VSQNPLLTYLNCARNTLTE-I--DVSH 146 (457)
T ss_dssp TTCSEEECCSSCCSCC--------CCTTCTTCCEEECCSSCCSCC-C------CTTCTTCCEEECTTSCCSC-C--CCTT
T ss_pred CCCCEEECcCCCCcee--------ecCCCCcCCEEECCCCcCCee-c------CCCCCcCCEEECCCCccce-e--cccc
Confidence 3566666666655321 267889999999999998873 3 7888999999999999886 3 3778
Q ss_pred CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCC
Q 021196 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLP 233 (316)
Q Consensus 154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~ 233 (316)
+++|++|++++|...+.+ .+..+++|++|++++|++++ +| +..+++|+.|++++|.++ + + .++.++
T Consensus 147 l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~-~----~--~l~~l~ 212 (457)
T 3bz5_A 147 NTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNIT-K----L--DLNQNI 212 (457)
T ss_dssp CTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCS-C----C--CCTTCT
T ss_pred CCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCC-e----e--ccccCC
Confidence 888888888888666555 35677888888888888877 32 567777888888888776 2 3 366777
Q ss_pred CCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCC-------CCcEEEccCcccccccCCCcccc
Q 021196 234 SLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFT-------SLKYLSMGFCTLTGALHGQGKLR 306 (316)
Q Consensus 234 ~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~-------~L~~L~l~~N~l~g~ip~~~~l~ 306 (316)
+|++|++++|++++ +| +..+++|+.|++++|++++ ..+..+.++. +|+.|++++|++.|.+| .+.|+
T Consensus 213 ~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~-~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~ 286 (457)
T 3bz5_A 213 QLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTE-LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCR 286 (457)
T ss_dssp TCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSC-CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCT
T ss_pred CCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCC-cCHHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccc
Confidence 78888888887775 55 5667777777777777776 3233333332 34555555555555555 24555
Q ss_pred chhhhh
Q 021196 307 VSEAFM 312 (316)
Q Consensus 307 ~L~~l~ 312 (316)
.|+.|+
T Consensus 287 ~L~~L~ 292 (457)
T 3bz5_A 287 KIKELD 292 (457)
T ss_dssp TCCCCC
T ss_pred cCCEEE
Confidence 555544
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=8.1e-24 Score=191.56 Aligned_cols=214 Identities=15% Similarity=0.144 Sum_probs=169.7
Q ss_pred cccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCC---CCCccccccc-------CCCCCCCEEEeeCccc
Q 021196 98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN---HFNNSIFSSL-------GGLSSLRNLSLIGNRL 167 (316)
Q Consensus 98 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n---~l~~~~p~~~-------~~l~~L~~L~L~~n~l 167 (316)
.+..+++|++|+|++|.+++..+......+..+++|++|++++| .+++.+|..+ ..+++|++|+|++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 45678899999999999987655444445889999999999996 4556666655 7899999999999999
Q ss_pred cc----ccCcccccCCCCCCEEEcCCCcCCCcccc---ccccCC---------CCCCEEEcCCccccccccchhhhhcCC
Q 021196 168 IG----SIDIKGLDSLGNLEELDMSDNAINNLVIP---KDYRGL---------RKLNTLYLGGTEIAMIDGSKVLQSIGS 231 (316)
Q Consensus 168 ~g----~ip~~~l~~l~~L~~L~L~~n~~~~~~p~---~~~~~l---------~~L~~L~l~~n~l~~~~~~~~p~~~~~ 231 (316)
.+ .+|. .+..+++|++|+|++|.+++..+. ..+..+ ++|++|++++|.++.+....+...+..
T Consensus 107 ~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 107 GPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CTTTHHHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 86 3665 788999999999999999754332 123333 899999999999974422223367888
Q ss_pred CCCCCEEECCCCCCCCc----cchhhhcCCCCCCEEECCCCCCC----cchhhhhhcCCCCCcEEEccCcccccc----c
Q 021196 232 LPSLKTLYLSSTNFKGT----VVNQELHNFTNLEELILDDSDLH----ISQLLQSIASFTSLKYLSMGFCTLTGA----L 299 (316)
Q Consensus 232 l~~L~~L~l~~n~l~g~----~p~~~~~~l~~L~~L~L~~n~l~----g~~ip~~l~~~~~L~~L~l~~N~l~g~----i 299 (316)
+++|++|++++|.++.. +.+..+..+++|++|+|++|.++ + .+|..+..+++|++|+|++|++++. +
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS-ALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH-HHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH-HHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 99999999999999732 22226778999999999999996 4 7899999999999999999999876 4
Q ss_pred CC-C--ccccchhhhhh
Q 021196 300 HG-Q--GKLRVSEAFMI 313 (316)
Q Consensus 300 p~-~--~~l~~L~~l~i 313 (316)
|. + +.+++|+.|++
T Consensus 265 ~~~l~~~~~~~L~~L~L 281 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRL 281 (386)
T ss_dssp HHHHHTCSSCCCCEEEC
T ss_pred HHHHhhccCCCeEEEEC
Confidence 55 4 45888887765
No 84
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.4e-21 Score=181.12 Aligned_cols=188 Identities=29% Similarity=0.388 Sum_probs=145.9
Q ss_pred ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (316)
Q Consensus 99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~ 178 (316)
+..+++|++|++++|.+.+. + .+..+++|++|++++|.+.+..| ++.+++|++|++++|.+.+ ++ .+..
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~l~~ 241 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDI-S-----VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG--TLAS 241 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG--GGGG
T ss_pred hccCCCCCEEECcCCcCCCC-h-----hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch--hhhc
Confidence 45667777888888777653 2 26777888888888888876554 6678888888888888764 33 5778
Q ss_pred CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCC
Q 021196 179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT 258 (316)
Q Consensus 179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~ 258 (316)
+++|++|++++|.+++.. .+..+++|++|++++|.++ .++. +..+++|+.|++++|++++ ++. +..++
T Consensus 242 l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~-----~~~~-~~~l~~L~~L~L~~n~l~~-~~~--~~~l~ 309 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQIS-----NISP-LAGLTALTNLELNENQLED-ISP--ISNLK 309 (466)
T ss_dssp CTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCC-----CCGG-GTTCTTCSEEECCSSCCSC-CGG--GGGCT
T ss_pred CCCCCEEECCCCccccch---hhhcCCCCCEEECCCCccC-----cccc-ccCCCccCeEEcCCCcccC-chh--hcCCC
Confidence 888888888888888753 2678888999999998887 4444 7788899999999998885 432 67889
Q ss_pred CCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196 259 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI 313 (316)
Q Consensus 259 ~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i 313 (316)
+|+.|++++|++++ ..| +..+++|+.|++++|++++. +.+..+++|+.|++
T Consensus 310 ~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 310 NLTYLTLYFNNISD-ISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSA 360 (466)
T ss_dssp TCSEEECCSSCCSC-CGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEEC
T ss_pred CCCEEECcCCcCCC-chh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeC
Confidence 99999999999987 444 77889999999999998875 56788888887765
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.87 E-value=1.4e-21 Score=170.26 Aligned_cols=173 Identities=23% Similarity=0.371 Sum_probs=134.9
Q ss_pred cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL 179 (316)
Q Consensus 100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l 179 (316)
..+++|+.|++++|.+... +. +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ +| .+..+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~~-----~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~--~l~~l 111 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-QG-----IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS--SLKDL 111 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-TT-----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG--GGTTC
T ss_pred hhcCcccEEEccCCCcccC-hh-----HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch--hhccC
Confidence 4577888888888887654 32 6778888888888888886444 7888888888888888874 44 47888
Q ss_pred CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCC
Q 021196 180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTN 259 (316)
Q Consensus 180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~ 259 (316)
++|++|++++|++++. + .+..+++|++|++++|.++ .+ +.+..+++|++|++++|.+++ +++ +..+++
T Consensus 112 ~~L~~L~L~~n~i~~~--~-~l~~l~~L~~L~l~~n~l~-----~~-~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~ 179 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNKIT-----DI-TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTK 179 (291)
T ss_dssp TTCCEEECTTSCCCCC--G-GGGGCTTCCEEECCSSCCC-----CC-GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTT
T ss_pred CCCCEEECCCCcCCCC--h-hhcCCCCCCEEEccCCcCC-----cc-hhhccCCCCCEEEccCCcccc-chh--hcCCCc
Confidence 8888888888888873 3 6778888888888888887 34 467788888888888888874 432 778888
Q ss_pred CCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccc
Q 021196 260 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA 298 (316)
Q Consensus 260 L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ 298 (316)
|+.|++++|.+++ +| .+..+++|+.|++++|+++..
T Consensus 180 L~~L~L~~N~i~~--l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 180 LQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCEEECCSSCCCB--CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred cCEEECCCCcCCC--Ch-hhccCCCCCEEECcCCcccCC
Confidence 8888888888874 55 478888888888888887653
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=6e-23 Score=184.35 Aligned_cols=238 Identities=17% Similarity=0.147 Sum_probs=162.8
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCC-CCcEEEccCCccCCccccccccccCCC-CCCcEEECCCCCCCccccccc
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQ-QLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNSIFSSL 151 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~p~~~ 151 (316)
..++.|+|+++.+...+...+ ...+..++ +|++|+|++|.+++..+......+... ++|++|++++|.+++..+..+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVEL-IQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHH-HHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHH-HHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 458899999998754442111 13456777 899999999998876654422333333 889999999999887666644
Q ss_pred C----CC-CCCCEEEeeCcccccccCc---ccccC-CCCCCEEEcCCCcCCCcccc---ccccCCC-CCCEEEcCCcccc
Q 021196 152 G----GL-SSLRNLSLIGNRLIGSIDI---KGLDS-LGNLEELDMSDNAINNLVIP---KDYRGLR-KLNTLYLGGTEIA 218 (316)
Q Consensus 152 ~----~l-~~L~~L~L~~n~l~g~ip~---~~l~~-l~~L~~L~L~~n~~~~~~p~---~~~~~l~-~L~~L~l~~n~l~ 218 (316)
. .+ ++|++|++++|.+++..+. ..+.. .++|++|++++|.+++..+. ..+..++ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 3 44 7899999999998754332 12334 35899999999998853222 1445555 8999999999987
Q ss_pred ccccchhhhhcCCC-CCCCEEECCCCCCCCc----cchhhhcC-CCCCCEEECCCCCCCcc---hhhhhhcCCCCCcEEE
Q 021196 219 MIDGSKVLQSIGSL-PSLKTLYLSSTNFKGT----VVNQELHN-FTNLEELILDDSDLHIS---QLLQSIASFTSLKYLS 289 (316)
Q Consensus 219 ~~~~~~~p~~~~~l-~~L~~L~l~~n~l~g~----~p~~~~~~-l~~L~~L~L~~n~l~g~---~ip~~l~~~~~L~~L~ 289 (316)
......+...+..+ ++|++|++++|.+++. ++. .+.. .++|++|++++|.+++. .+...+..+++|++|+
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY-IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH-HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 33222344456666 4899999999998752 443 4444 46899999999998762 2344557788999999
Q ss_pred ccCcccccc-------cCC-Cccccchhhhhh
Q 021196 290 MGFCTLTGA-------LHG-QGKLRVSEAFMI 313 (316)
Q Consensus 290 l~~N~l~g~-------ip~-~~~l~~L~~l~i 313 (316)
+++|++.+. ++. +..++.|+.|++
T Consensus 260 L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL 291 (362)
T 3goz_A 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291 (362)
T ss_dssp EEHHHHTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred eccCCccccCHHHHHHHHHHhccCCceEEEec
Confidence 999984432 222 566777777665
No 87
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=6.3e-22 Score=189.60 Aligned_cols=116 Identities=26% Similarity=0.392 Sum_probs=52.3
Q ss_pred cccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCccccc
Q 021196 98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD 177 (316)
Q Consensus 98 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~ 177 (316)
.|.++++|++|+|++|.+++..+. +|.++++|++|+|++|++++..+..|.++++|++|++++|++++ +|+..++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~----~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~ 145 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIG 145 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC-STTCCCT
T ss_pred HHhCCCCCCEEECCCCcCCCcChh----HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC-CChhhhh
Confidence 344444555555555544433222 24444555555555554443333344445555555555554442 3322344
Q ss_pred CCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcccc
Q 021196 178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218 (316)
Q Consensus 178 ~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~ 218 (316)
++++|++|++++|.+++...+..+..+++|++|++++|.++
T Consensus 146 ~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 44555555555554443211114444445555555555444
No 88
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.85 E-value=2e-23 Score=203.09 Aligned_cols=201 Identities=16% Similarity=0.141 Sum_probs=102.7
Q ss_pred CCcHHHHHHHHHHhhhCCCCC-CCCCCCCCCCCCCCCCcccceEEcCCCCcEEEEEcCCCCcccccccccccccccCCCC
Q 021196 26 GCLEQERYALLQLRHFFNDDQ-CLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQ 104 (316)
Q Consensus 26 ~~~~~~~~aL~~~~~~~~~~~-~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~ 104 (316)
+..+.+++++++++.+...+. .....|. ......+.|.+++++ ..+++.++|.++.+..... ..
T Consensus 128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~~~~-----------~~ 192 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDSKTAKKQQPT--GDSTPSGTATNSAVS--TPLTPKIELFANGKDEANQ-----------AL 192 (727)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred hccccchhhhhhhhhhcccccCcccCCCc--CCCCccccCCCceec--CCccceEEeeCCCCCcchh-----------hH
Confidence 345678899999998775432 2344674 445566789999886 4789999998876643211 12
Q ss_pred CcEEEccCCccCCccc-----cccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196 105 LESLYLIGNNIAGCVE-----NEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL 179 (316)
Q Consensus 105 L~~L~L~~n~~~~~~~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l 179 (316)
++.++|+.|.+.+... ....+.+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|. .+.++
T Consensus 193 l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l 269 (727)
T 4b8c_D 193 LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPA-EIKNL 269 (727)
T ss_dssp -----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCG-GGGGG
T ss_pred hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccCh-hhhCC
Confidence 3344444444333110 001134677788888888888877 67777777888888888888877 6775 67888
Q ss_pred CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccch
Q 021196 180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN 251 (316)
Q Consensus 180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~ 251 (316)
++|++|+|++|.++ .+|. .+..+++|++|+|++|.++ .+|..++++++|+.|+|++|.+++.+|.
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~-----~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPA-ELGSCFQLKYFYFFDNMVT-----TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp TTCCEEECTTSCCS-SCCS-SGGGGTTCSEEECCSSCCC-----CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCCCEEeCcCCcCC-ccCh-hhcCCCCCCEEECCCCCCC-----ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 88888888888887 4666 7788888888888888876 6777788888888888888888876665
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.85 E-value=9.4e-21 Score=180.34 Aligned_cols=173 Identities=23% Similarity=0.361 Sum_probs=102.6
Q ss_pred cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL 179 (316)
Q Consensus 100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l 179 (316)
..+++|+.|++++|.+... +. +..+++|++|+|++|.+++..| +..+++|++|+|++|.+.+ +| .+..+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l-~~-----l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~--~l~~l 108 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV-QG-----IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS--SLKDL 108 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC-TT-----GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT--TSTTC
T ss_pred hcCCCCCEEECcCCCCCCC-hH-----HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch--hhccC
Confidence 3455666666666665432 21 5566666666666666664333 5566666666666666653 33 45666
Q ss_pred CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCC
Q 021196 180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTN 259 (316)
Q Consensus 180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~ 259 (316)
++|++|+|++|.+++. + .+..+++|+.|+|++|.++ .+ ..+..+++|+.|+|++|.+++..| +..+++
T Consensus 109 ~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~-----~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~ 176 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNKIT-----DI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTK 176 (605)
T ss_dssp TTCCEEECTTSCCCCC--G-GGGGCTTCSEEECCSSCCC-----CC-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTT
T ss_pred CCCCEEEecCCCCCCC--c-cccCCCccCEEECCCCccC-----Cc-hhhcccCCCCEEECcCCcCCCchh---hccCCC
Confidence 6666666666666652 2 4556666666666666665 23 345566666666666666664332 556666
Q ss_pred CCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccc
Q 021196 260 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA 298 (316)
Q Consensus 260 L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ 298 (316)
|+.|+|++|.+++ +| .+..+++|+.|+|++|++++.
T Consensus 177 L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 177 LQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCEEECCSSCCCB--CG-GGTTCTTCSEEECCSEEEECC
T ss_pred CCEEECcCCCCCC--Ch-HHccCCCCCEEEccCCcCcCC
Confidence 6666666666654 33 456666666666666666554
No 90
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=157.91 Aligned_cols=153 Identities=18% Similarity=0.249 Sum_probs=123.0
Q ss_pred cEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccc-cccCCCCCCCEEEeeCcccccccCcccccCCCCCCE
Q 021196 106 ESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIF-SSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE 184 (316)
Q Consensus 106 ~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~ 184 (316)
+.+++++|.++. +|.. + ...+++|++++|.+++..+ ..|..+++|++|++++|++++ +++..+..+++|++
T Consensus 14 ~~l~~s~n~l~~-iP~~----~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEH----I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNE 85 (220)
T ss_dssp TEEECCSSCCSS-CCSC----C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-ECTTTTTTCTTCCE
T ss_pred CEeEeCCCCccc-CccC----C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-ECHHHhCCCCCCCE
Confidence 588999998865 4532 2 3456899999999987644 347889999999999999885 44447889999999
Q ss_pred EEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEE
Q 021196 185 LDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELI 264 (316)
Q Consensus 185 L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~ 264 (316)
|+|++|.+++..+. .+..+++|++|++++|.++ + ..|..+..+++|++|++++|++++..|. .+..+++|+.|+
T Consensus 86 L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~ 159 (220)
T 2v70_A 86 ILLTSNRLENVQHK-MFKGLESLKTLMLRSNRIT-C---VGNDSFIGLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLN 159 (220)
T ss_dssp EECCSSCCCCCCGG-GGTTCSSCCEEECTTSCCC-C---BCTTSSTTCTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEE
T ss_pred EECCCCccCccCHh-HhcCCcCCCEEECCCCcCC-e---ECHhHcCCCccCCEEECCCCcCCEECHH-HhcCCCCCCEEE
Confidence 99999999885444 7888999999999999988 4 4467788889999999999999865554 888899999999
Q ss_pred CCCCCCCc
Q 021196 265 LDDSDLHI 272 (316)
Q Consensus 265 L~~n~l~g 272 (316)
+++|.+++
T Consensus 160 L~~N~l~c 167 (220)
T 2v70_A 160 LLANPFNC 167 (220)
T ss_dssp CCSCCEEC
T ss_pred ecCcCCcC
Confidence 99999876
No 91
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=1.6e-20 Score=157.73 Aligned_cols=158 Identities=25% Similarity=0.297 Sum_probs=79.0
Q ss_pred CCCCCCcccceEEcCCCCcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEE
Q 021196 57 NYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFL 136 (316)
Q Consensus 57 ~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L 136 (316)
.+.+.|+|.+|.|+.. +++.+ +..+ .++|++|++++|.+.+..+.. +..+++|++|
T Consensus 14 ~~~~~Cs~~~v~c~~~--~l~~i----------------p~~~--~~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L 69 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSK--RHASV----------------PAGI--PTNAQILYLHDNQITKLEPGV----FDSLINLKEL 69 (229)
T ss_dssp CTTCEEETTEEECTTS--CCSSC----------------CSCC--CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEE
T ss_pred CCCCEEeCCEeEccCC--CcCcc----------------CCCC--CCCCCEEEcCCCccCccCHHH----hhCccCCcEE
Confidence 3788899999999631 11111 1111 245666666666666544432 5555666666
Q ss_pred ECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcc
Q 021196 137 YLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTE 216 (316)
Q Consensus 137 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~ 216 (316)
++++|.+....+..|..+++|++|+|++|++++ +++..+..+++|++|++++|+++. +|. .+..+++|++|++++|.
T Consensus 70 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~-lp~-~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 70 YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLTE-LPR-GIERLTHLTHLALDQNQ 146 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCS-CCT-TGGGCTTCSEEECCSSC
T ss_pred ECCCCCCCCcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhhCeEeccCCcccc-cCc-ccccCCCCCEEECCCCc
Confidence 666665543333334555555555555555542 333234445555555555555542 333 44444444444444444
Q ss_pred ccccccchhh-hhcCCCCCCCEEECCCCCCC
Q 021196 217 IAMIDGSKVL-QSIGSLPSLKTLYLSSTNFK 246 (316)
Q Consensus 217 l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~ 246 (316)
++ .++ ..+..+++|+.|++++|.+.
T Consensus 147 l~-----~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 147 LK-----SIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CC-----CCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CC-----ccCHHHHhCCCCCCEEEeeCCCcc
Confidence 44 222 23444444444444444444
No 92
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=8e-21 Score=181.92 Aligned_cols=205 Identities=19% Similarity=0.166 Sum_probs=123.4
Q ss_pred cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL 179 (316)
Q Consensus 100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l 179 (316)
..+++|+.++++.|.+....+.. ..+..+.+|+++++..+... ..+..+..+++|+.+++..+......+...+..+
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~--~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCS--QSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECC--HHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred ccccccccchhhccccccccccc--cchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccc
Confidence 45677888888888765432111 12345566666666666554 2344455666666666666665544444455666
Q ss_pred CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCC
Q 021196 180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTN 259 (316)
Q Consensus 180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~ 259 (316)
++++.++++.|.+.+..+. .+..+++++.|++++|.+..+ ..|..+..+++|++|++++|++++..|. .+.++++
T Consensus 445 ~~l~~l~ls~n~l~~~~~~-~~~~~~~L~~L~Ls~N~~~~~---~~~~~~~~l~~L~~L~Ls~N~L~~l~~~-~f~~l~~ 519 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSS 519 (635)
T ss_dssp TTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTT
T ss_pred ccccccccccccccccccc-ccccchhhhhhhhhhcccccc---cCchhhhhccccCEEECCCCccCCcChH-HHcCCCC
Confidence 6666666666666665444 566666666666666654312 3455566666666666666666643333 6666666
Q ss_pred CCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccc-cchhhhhh
Q 021196 260 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKL-RVSEAFMI 313 (316)
Q Consensus 260 L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l-~~L~~l~i 313 (316)
|++|+|++|++++ ..|..+..+++|++|++++|++++.+|. +..+ ++|+.|++
T Consensus 520 L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 520 LQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp CCEEECTTSCCCB-CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred CCEEECCCCcCCC-CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 6666666666665 4455566666666666666666666665 5554 45555543
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=3.5e-22 Score=179.36 Aligned_cols=224 Identities=17% Similarity=0.170 Sum_probs=160.2
Q ss_pred cEEEEEcCCCCcccccccccccccccC-CCCCcEEEccCCccCCccccccccccCCC-CCCcEEECCCCCCCccccccc-
Q 021196 75 RVIKLDLRDTRNWESAEWYMNASLFTP-FQQLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNSIFSSL- 151 (316)
Q Consensus 75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~p~~~- 151 (316)
+++.|+|++|.+...+...+. ..+.. .++|++|++++|.+++..+......+..+ ++|++|++++|.+++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELV-QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHH-HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHH-HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence 789999999988654431111 11222 28899999999999877665443445566 899999999999987655543
Q ss_pred ---CC-CCCCCEEEeeCcccccc----cCcccccCCC-CCCEEEcCCCcCCCcccc---ccccCC-CCCCEEEcCCcccc
Q 021196 152 ---GG-LSSLRNLSLIGNRLIGS----IDIKGLDSLG-NLEELDMSDNAINNLVIP---KDYRGL-RKLNTLYLGGTEIA 218 (316)
Q Consensus 152 ---~~-l~~L~~L~L~~n~l~g~----ip~~~l~~l~-~L~~L~L~~n~~~~~~p~---~~~~~l-~~L~~L~l~~n~l~ 218 (316)
.. .++|++|++++|.+++. ++. .+..++ +|++|+|++|++++..+. ..+... ++|++|++++|.++
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQ-ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHH-HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 34 36899999999998743 232 445555 899999999999876543 133445 59999999999997
Q ss_pred ccccchhhhhcCCC-CCCCEEECCCCCCCCccch---hhhcCCCCCCEEECCCCCCCc------chhhhhhcCCCCCcEE
Q 021196 219 MIDGSKVLQSIGSL-PSLKTLYLSSTNFKGTVVN---QELHNFTNLEELILDDSDLHI------SQLLQSIASFTSLKYL 288 (316)
Q Consensus 219 ~~~~~~~p~~~~~l-~~L~~L~l~~n~l~g~~p~---~~~~~l~~L~~L~L~~n~l~g------~~ip~~l~~~~~L~~L 288 (316)
......++..+... ++|++|++++|.+++..+. ..+..+++|++|++++|.+.+ ..++..+..+++|+.|
T Consensus 210 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~L 289 (362)
T 3goz_A 210 LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289 (362)
T ss_dssp GSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEE
T ss_pred hhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEE
Confidence 33333477777664 5899999999999864431 245678899999999998432 1345567788889999
Q ss_pred EccCcccccccC
Q 021196 289 SMGFCTLTGALH 300 (316)
Q Consensus 289 ~l~~N~l~g~ip 300 (316)
|+++|++.+..+
T Consensus 290 dL~~N~l~~~~~ 301 (362)
T 3goz_A 290 DKNGKEIHPSHS 301 (362)
T ss_dssp CTTSCBCCGGGC
T ss_pred ecCCCcCCCcch
Confidence 999999887644
No 94
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=1.1e-22 Score=188.15 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=31.1
Q ss_pred hcCCCCCCEEECCCCCCCcchhhhhhcC-----CCCCcEEEccCccccc----ccCC-Cccccchhhhhh
Q 021196 254 LHNFTNLEELILDDSDLHISQLLQSIAS-----FTSLKYLSMGFCTLTG----ALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 254 ~~~l~~L~~L~L~~n~l~g~~ip~~l~~-----~~~L~~L~l~~N~l~g----~ip~-~~~l~~L~~l~i 313 (316)
+..+++|++|++++|.+++ ..+..+.. .++|++|++++|++++ .+|. +..++.|++|++
T Consensus 337 l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLED-AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp HHHCSSCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred HhhCCCccEEEccCCcccc-ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence 3445556666666665554 33332221 4566666666666654 4554 555566665543
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.84 E-value=2.6e-20 Score=152.76 Aligned_cols=155 Identities=20% Similarity=0.306 Sum_probs=109.8
Q ss_pred CCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCC
Q 021196 128 SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKL 207 (316)
Q Consensus 128 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L 207 (316)
..+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+ + .+..+++|++|++++|.+++..+. .+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~-~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-N-PISGLSNLERLRIMGKDVTSDKIP-NLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-G-GGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-h-hhhcCCCCCEEEeECCccCcccCh-hhcCCCCC
Confidence 44566777777777776 455 5667777777777777554 22 2 567777888888888887776666 77778888
Q ss_pred CEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcE
Q 021196 208 NTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY 287 (316)
Q Consensus 208 ~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~ 287 (316)
++|++++|.++ + ..|..+..+++|++|++++|.+.+.+| .+..+++|++|++++|.+++ ++ .+..+++|+.
T Consensus 115 ~~L~Ls~n~i~-~---~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 115 TLLDISHSAHD-D---SILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQ 185 (197)
T ss_dssp CEEECCSSBCB-G---GGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCE
T ss_pred CEEEecCCccC-c---HhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCE
Confidence 88888888876 4 466777788888888888887333565 47778888888888888874 44 6777888888
Q ss_pred EEccCccccc
Q 021196 288 LSMGFCTLTG 297 (316)
Q Consensus 288 L~l~~N~l~g 297 (316)
|++++|++.+
T Consensus 186 L~l~~N~i~~ 195 (197)
T 4ezg_A 186 LYAFSQTIGG 195 (197)
T ss_dssp EEECBC----
T ss_pred EEeeCcccCC
Confidence 8888887754
No 96
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=3.4e-22 Score=184.77 Aligned_cols=193 Identities=21% Similarity=0.143 Sum_probs=125.7
Q ss_pred CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccc-----ccccCCCCCCCEEEeeCcccccc----cCc
Q 021196 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-----FSSLGGLSSLRNLSLIGNRLIGS----IDI 173 (316)
Q Consensus 103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~L~~n~l~g~----ip~ 173 (316)
++|++|++++|.+++.........+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 355555555555443211111122445666666666666665432 22223466777777777766542 343
Q ss_pred ccccCCCCCCEEEcCCCcCCCcccccccc-----CCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCc
Q 021196 174 KGLDSLGNLEELDMSDNAINNLVIPKDYR-----GLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGT 248 (316)
Q Consensus 174 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~ 248 (316)
.+..+++|++|++++|.+++..+. .+. ..++|++|++++|.++......++..+..+++|++|++++|.+++.
T Consensus 279 -~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 279 -VLRAKESLKELSLAGNELGDEGAR-LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp -HHHHCTTCCEEECTTCCCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred -HHhhCCCcceEECCCCCCchHHHH-HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 455677777777777776553222 222 2357888888888877332234677788889999999999998754
Q ss_pred cchhhhcC-----CCCCCEEECCCCCCCc---chhhhhhcCCCCCcEEEccCcccccc
Q 021196 249 VVNQELHN-----FTNLEELILDDSDLHI---SQLLQSIASFTSLKYLSMGFCTLTGA 298 (316)
Q Consensus 249 ~p~~~~~~-----l~~L~~L~L~~n~l~g---~~ip~~l~~~~~L~~L~l~~N~l~g~ 298 (316)
.+. .+.. .++|++|++++|.+++ ..+|..+..+++|++|++++|++++.
T Consensus 357 ~~~-~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 357 GVR-ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHH-HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred cHH-HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 443 3332 6799999999999984 15788899999999999999999865
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=3.5e-20 Score=161.36 Aligned_cols=183 Identities=23% Similarity=0.384 Sum_probs=152.8
Q ss_pred CCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCC
Q 021196 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE 183 (316)
Q Consensus 104 ~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~ 183 (316)
++..+.+..+.+.+..+ +..+++|++|++++|.+.. ++ .+..+++|++|++++|++++ +++ +..+++|+
T Consensus 25 ~~~~~~l~~~~~~~~~~------~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~ 93 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLG 93 (291)
T ss_dssp HHHHHHTTCSCTTSEEC------HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred HHHHHHhcCCCcccccc------hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc--cccCCCCC
Confidence 34445566666655433 5678899999999999984 44 48889999999999999985 443 88999999
Q ss_pred EEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEE
Q 021196 184 ELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEEL 263 (316)
Q Consensus 184 ~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L 263 (316)
+|++++|.+++. + .+..+++|++|++++|.++ .+ +.+..+++|+.|++++|.+++ + . .+..+++|++|
T Consensus 94 ~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~i~-----~~-~~l~~l~~L~~L~l~~n~l~~-~-~-~l~~l~~L~~L 161 (291)
T 1h6t_A 94 WLFLDENKVKDL--S-SLKDLKKLKSLSLEHNGIS-----DI-NGLVHLPQLESLYLGNNKITD-I-T-VLSRLTKLDTL 161 (291)
T ss_dssp EEECCSSCCCCG--G-GGTTCTTCCEEECTTSCCC-----CC-GGGGGCTTCCEEECCSSCCCC-C-G-GGGGCTTCSEE
T ss_pred EEECCCCcCCCC--h-hhccCCCCCEEECCCCcCC-----CC-hhhcCCCCCCEEEccCCcCCc-c-h-hhccCCCCCEE
Confidence 999999999883 4 5899999999999999997 44 468889999999999999985 4 3 78899999999
Q ss_pred ECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196 264 ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI 313 (316)
Q Consensus 264 ~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i 313 (316)
++++|.+++ ++. +..+++|+.|++++|++++ +|.+..+++|+.|++
T Consensus 162 ~L~~N~l~~--~~~-l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l 207 (291)
T 1h6t_A 162 SLEDNQISD--IVP-LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLEL 207 (291)
T ss_dssp ECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEE
T ss_pred EccCCcccc--chh-hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEEC
Confidence 999999986 443 8999999999999999986 567888888888765
No 98
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=1.2e-19 Score=167.62 Aligned_cols=120 Identities=21% Similarity=0.267 Sum_probs=61.6
Q ss_pred CCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCC
Q 021196 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL 182 (316)
Q Consensus 103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L 182 (316)
++|++|++++|.+++ +|. ++++++|++|++++|.+++ +|..+ .+|++|++++|++.+ +| .+.++++|
T Consensus 131 ~~L~~L~L~~n~l~~-lp~-----~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L 197 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LPE-----LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFL 197 (454)
T ss_dssp TTCCEEECCSSCCSS-CCC-----CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTC
T ss_pred CCCCEEECcCCCCCC-Ccc-----cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCC
Confidence 456666666665554 332 5566666666666666553 34322 355555555555553 33 35555555
Q ss_pred CEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCC
Q 021196 183 EELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFK 246 (316)
Q Consensus 183 ~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~ 246 (316)
++|++++|.+++ +|. . .++|++|++++|.++ .+| .++.+++|++|++++|+++
T Consensus 198 ~~L~l~~N~l~~-l~~-~---~~~L~~L~l~~n~l~-----~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 198 TAIYADNNSLKK-LPD-L---PLSLESIVAGNNILE-----ELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CEEECCSSCCSS-CCC-C---CTTCCEEECCSSCCS-----SCC-CCTTCTTCCEEECCSSCCS
T ss_pred CEEECCCCcCCc-CCC-C---cCcccEEECcCCcCC-----ccc-ccCCCCCCCEEECCCCcCC
Confidence 555555555554 222 1 134555555555444 333 2445555555555555554
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=4.9e-20 Score=165.31 Aligned_cols=175 Identities=25% Similarity=0.263 Sum_probs=142.4
Q ss_pred EEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccC-CCCCCcEEECCCCCCCcccccccCCCCC
Q 021196 78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS-RLNNLKFLYLDYNHFNNSIFSSLGGLSS 156 (316)
Q Consensus 78 ~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 156 (316)
.++++++++..... .+ .+.++.|+|++|.+++..+.. +. ++++|++|++++|.+++..+..|..+++
T Consensus 22 ~l~c~~~~l~~iP~------~~--~~~l~~L~Ls~N~l~~l~~~~----~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~ 89 (361)
T 2xot_A 22 ILSCSKQQLPNVPQ------SL--PSYTALLDLSHNNLSRLRAEW----TPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89 (361)
T ss_dssp EEECCSSCCSSCCS------SC--CTTCSEEECCSSCCCEECTTS----SSSCCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred EEEeCCCCcCccCc------cC--CCCCCEEECCCCCCCccChhh----hhhcccccCEEECCCCcCCccChhhccCCCC
Confidence 57888887744321 12 246899999999998766542 66 8999999999999999777788999999
Q ss_pred CCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhc----CCC
Q 021196 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSI----GSL 232 (316)
Q Consensus 157 L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~----~~l 232 (316)
|++|+|++|++.+ +++..+..+++|++|+|++|++++..+. .+..+++|++|++++|.++ .+|..+ ..+
T Consensus 90 L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~-----~l~~~~~~~~~~l 162 (361)
T 2xot_A 90 LRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLSQNQIS-----RFPVELIKDGNKL 162 (361)
T ss_dssp CCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCC-----SCCGGGTC----C
T ss_pred CCEEECCCCcCCc-CCHHHhCCCcCCCEEECCCCcccEECHH-HhCCcccCCEEECCCCcCC-----eeCHHHhcCcccC
Confidence 9999999999884 5555789999999999999999986555 8999999999999999998 566544 578
Q ss_pred CCCCEEECCCCCCCCccchhhhcCCCC--CCEEECCCCCCCc
Q 021196 233 PSLKTLYLSSTNFKGTVVNQELHNFTN--LEELILDDSDLHI 272 (316)
Q Consensus 233 ~~L~~L~l~~n~l~g~~p~~~~~~l~~--L~~L~L~~n~l~g 272 (316)
++|+.|++++|+++ .+|...+..++. ++.|++++|.+..
T Consensus 163 ~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 163 PKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp TTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCCCccC
Confidence 99999999999998 677667887877 4889999999875
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=4.5e-20 Score=174.04 Aligned_cols=170 Identities=18% Similarity=0.180 Sum_probs=143.9
Q ss_pred CCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCC
Q 021196 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE 183 (316)
Q Consensus 104 ~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~ 183 (316)
+|+.|++++|.+++ +|.. + +++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.+ +|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~----l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDN----L--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LPA--SLK 123 (571)
T ss_dssp TCSEEECCSSCCSC-CCSC----C--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CCT--TCC
T ss_pred CccEEEeCCCCCCc-cCHh----H--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hhc--CCC
Confidence 89999999999987 6643 3 378999999999998 677 567999999999999986 775 554 999
Q ss_pred EEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEE
Q 021196 184 ELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEEL 263 (316)
Q Consensus 184 ~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L 263 (316)
+|++++|.+++ +|. .+++|+.|++++|.++ .+|. .+++|++|++++|.+++ +|. +. ++|+.|
T Consensus 124 ~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~-----~lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L 185 (571)
T 3cvr_A 124 HLDVDNNQLTM-LPE----LPALLEYINADNNQLT-----MLPE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLEAL 185 (571)
T ss_dssp EEECCSSCCSC-CCC----CCTTCCEEECCSSCCS-----CCCC---CCTTCCEEECCSSCCSC-CCC--CC--TTCCEE
T ss_pred EEECCCCcCCC-CCC----cCccccEEeCCCCccC-----cCCC---cCCCcCEEECCCCCCCC-cch--hh--CCCCEE
Confidence 99999999998 554 6889999999999998 5665 57899999999999995 876 54 899999
Q ss_pred ECCCCCCCcchhhhhhcCCCCC-------cEEEccCcccccccCC-Cccccchhhhhh
Q 021196 264 ILDDSDLHISQLLQSIASFTSL-------KYLSMGFCTLTGALHG-QGKLRVSEAFMI 313 (316)
Q Consensus 264 ~L~~n~l~g~~ip~~l~~~~~L-------~~L~l~~N~l~g~ip~-~~~l~~L~~l~i 313 (316)
++++|+|+ .+|. +.. +| +.|+|++|+++ .||. +..+++|+.|++
T Consensus 186 ~Ls~N~L~--~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 186 DVSTNLLE--SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL 237 (571)
T ss_dssp ECCSSCCS--SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEEC
T ss_pred ECcCCCCC--chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEe
Confidence 99999998 5787 554 77 99999999998 5777 888999988765
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=2.7e-20 Score=152.64 Aligned_cols=154 Identities=21% Similarity=0.343 Sum_probs=130.0
Q ss_pred cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL 179 (316)
Q Consensus 100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l 179 (316)
+.+++|++|++++|.+. .+|. +..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+. .+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~~-----l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLTG-----IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIP-NLSGL 111 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCTT-----GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSC-CCTTC
T ss_pred hhcCCccEEeccCCCcc-ChHH-----HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccCh-hhcCC
Confidence 56788999999999987 3442 788999999999999765 345788999999999999999876676 88999
Q ss_pred CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcc-ccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCC
Q 021196 180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTE-IAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT 258 (316)
Q Consensus 180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~-l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~ 258 (316)
++|++|++++|.+++..|. .+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+++ ++ .+..++
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~-----~~~-~l~~l~~L~~L~l~~n~i~~-~~--~l~~l~ 181 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAIT-----DIM-PLKTLPELKSLNIQFDGVHD-YR--GIEDFP 181 (197)
T ss_dssp TTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCC-----CCG-GGGGCSSCCEEECTTBCCCC-CT--TGGGCS
T ss_pred CCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCcc-----ccH-hhcCCCCCCEEECCCCCCcC-hH--HhccCC
Confidence 9999999999999987776 88999999999999998 65 555 68899999999999999984 54 678899
Q ss_pred CCCEEECCCCCCCc
Q 021196 259 NLEELILDDSDLHI 272 (316)
Q Consensus 259 ~L~~L~L~~n~l~g 272 (316)
+|++|++++|++.+
T Consensus 182 ~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 182 KLNQLYAFSQTIGG 195 (197)
T ss_dssp SCCEEEECBC----
T ss_pred CCCEEEeeCcccCC
Confidence 99999999999864
No 102
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=2.5e-19 Score=165.35 Aligned_cols=183 Identities=19% Similarity=0.184 Sum_probs=97.9
Q ss_pred ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (316)
Q Consensus 99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~ 178 (316)
++.+++|++|++++|.+++ +|. + .++|++|++++|.++ .+| .++.+++|++|++++|++++ +|. .
T Consensus 191 ~~~l~~L~~L~l~~N~l~~-l~~-----~--~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~-~--- 255 (454)
T 1jl5_A 191 LQNLPFLTAIYADNNSLKK-LPD-----L--PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD-L--- 255 (454)
T ss_dssp CTTCTTCCEEECCSSCCSS-CCC-----C--CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS-C---
T ss_pred ccCCCCCCEEECCCCcCCc-CCC-----C--cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc-c---
Confidence 3444555555555554443 221 0 124555555555554 344 25556666666666666553 332 1
Q ss_pred CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhh-------------cCCC-CCCCEEECCCCC
Q 021196 179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQS-------------IGSL-PSLKTLYLSSTN 244 (316)
Q Consensus 179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~-------------~~~l-~~L~~L~l~~n~ 244 (316)
+++|++|++++|++++ +|. . .++|++|++++|.++ +-. .+|.. +..+ ++|++|++++|+
T Consensus 256 ~~~L~~L~l~~N~l~~-l~~-~---~~~L~~L~ls~N~l~-~l~-~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~ 328 (454)
T 1jl5_A 256 PPSLEALNVRDNYLTD-LPE-L---PQSLTFLDVSENIFS-GLS-ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 328 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCC-C---CTTCCEEECCSSCCS-EES-CCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC
T ss_pred ccccCEEECCCCcccc-cCc-c---cCcCCEEECcCCccC-ccc-CcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc
Confidence 2445555555555554 232 1 245555555555554 100 11111 1122 467777887777
Q ss_pred CCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCccccc--ccCC-Cccc-------------cch
Q 021196 245 FKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG--ALHG-QGKL-------------RVS 308 (316)
Q Consensus 245 l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g--~ip~-~~~l-------------~~L 308 (316)
+++ +|. .+++|++|++++|+++ .+|. .+++|++|++++|+++| .+|. ++.+ ++|
T Consensus 329 l~~-lp~----~~~~L~~L~L~~N~l~--~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L 398 (454)
T 1jl5_A 329 LIE-LPA----LPPRLERLIASFNHLA--EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNL 398 (454)
T ss_dssp CSC-CCC----CCTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------
T ss_pred ccc-ccc----cCCcCCEEECCCCccc--cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcC
Confidence 774 664 2578888888888887 4665 46788899999998888 7777 7766 667
Q ss_pred hhhhh
Q 021196 309 EAFMI 313 (316)
Q Consensus 309 ~~l~i 313 (316)
+.|++
T Consensus 399 ~~L~l 403 (454)
T 1jl5_A 399 KQLHV 403 (454)
T ss_dssp -----
T ss_pred CEEEC
Confidence 77664
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=1e-19 Score=151.95 Aligned_cols=153 Identities=16% Similarity=0.230 Sum_probs=126.7
Q ss_pred cEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEE
Q 021196 106 ESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEEL 185 (316)
Q Consensus 106 ~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L 185 (316)
+.++++++.++. +|.. + .+++++|++++|.+++..+..|..+++|++|+|++|++++..|. .+..+++|++|
T Consensus 14 ~~v~c~~~~l~~-iP~~----l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L 85 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTN----L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD-AFQGLRSLNSL 85 (220)
T ss_dssp TEEECTTSCCSS-CCSS----C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT-TTTTCSSCCEE
T ss_pred CEEEcCCCCcCc-CCCc----c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH-HhhCCcCCCEE
Confidence 678898888765 3432 2 26899999999999977777889999999999999999865554 89999999999
Q ss_pred EcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEEC
Q 021196 186 DMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELIL 265 (316)
Q Consensus 186 ~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L 265 (316)
+|++|.++. +|+..+..+++|++|++++|.++ + ..|..+..+++|++|++++|.+++ ++...+..+++|+.|++
T Consensus 86 ~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~-~---~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 86 VLYGNKITE-LPKSLFEGLFSLQLLLLNANKIN-C---LRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp ECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-C---CCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEEC
T ss_pred ECCCCcCCc-cCHhHccCCCCCCEEECCCCCCC-E---eCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEe
Confidence 999999987 55547888999999999999998 4 446678899999999999999984 55547888999999999
Q ss_pred CCCCCCc
Q 021196 266 DDSDLHI 272 (316)
Q Consensus 266 ~~n~l~g 272 (316)
++|.+..
T Consensus 160 ~~N~~~c 166 (220)
T 2v9t_B 160 AQNPFIC 166 (220)
T ss_dssp CSSCEEC
T ss_pred CCCCcCC
Confidence 9999865
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1.5e-19 Score=151.86 Aligned_cols=153 Identities=21% Similarity=0.277 Sum_probs=132.0
Q ss_pred CcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCE
Q 021196 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE 184 (316)
Q Consensus 105 L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~ 184 (316)
-+.++.+++.++. +|.. + .++|++|++++|.+++..|..+..+++|++|+|++|++. .+|...+..+++|++
T Consensus 21 ~~~v~c~~~~l~~-ip~~----~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 21 GTTVDCRSKRHAS-VPAG----I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTV 92 (229)
T ss_dssp TTEEECTTSCCSS-CCSC----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCEeEccCCCcCc-cCCC----C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCE
Confidence 5679998888754 4432 2 388999999999999888889999999999999999986 567657889999999
Q ss_pred EEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEE
Q 021196 185 LDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELI 264 (316)
Q Consensus 185 L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~ 264 (316)
|+|++|++++. ++..+..+++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|...+..+++|+.|+
T Consensus 93 L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 93 LDLGTNQLTVL-PSAVFDRLVHLKELFMCCNKLT-----ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp EECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-----SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred EECCCCcCCcc-ChhHhCcchhhCeEeccCCccc-----ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEE
Confidence 99999999985 4437889999999999999998 78888999999999999999998 56655788999999999
Q ss_pred CCCCCCCc
Q 021196 265 LDDSDLHI 272 (316)
Q Consensus 265 L~~n~l~g 272 (316)
+++|.+.+
T Consensus 166 l~~N~~~c 173 (229)
T 3e6j_A 166 LFGNPWDC 173 (229)
T ss_dssp CTTSCBCT
T ss_pred eeCCCccC
Confidence 99999986
No 105
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=1.7e-19 Score=171.97 Aligned_cols=69 Identities=23% Similarity=0.167 Sum_probs=30.4
Q ss_pred CCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhh
Q 021196 233 PSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAF 311 (316)
Q Consensus 233 ~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l 311 (316)
++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|. ++++++|+.|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~--~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLT--SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289 (622)
T ss_dssp TTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred CCCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCC--cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence 344455555554442 33 12344444444444444 2333 3344445555555444 3343 4444444444
Q ss_pred h
Q 021196 312 M 312 (316)
Q Consensus 312 ~ 312 (316)
+
T Consensus 290 ~ 290 (622)
T 3g06_A 290 N 290 (622)
T ss_dssp E
T ss_pred E
Confidence 3
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=9.8e-20 Score=163.33 Aligned_cols=156 Identities=22% Similarity=0.220 Sum_probs=71.9
Q ss_pred CcEEECCCCCCCcccccccC-CCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEE
Q 021196 133 LKFLYLDYNHFNNSIFSSLG-GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLY 211 (316)
Q Consensus 133 L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~ 211 (316)
+++|+|++|.+++..+..+. ++++|++|+|++|++++ +++..+.++++|++|+|++|++++..+. .+..+++|++|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~ 118 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLHTLDEF-LFSDLQALEVLL 118 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEE
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-cChhhccCCCCCCEEECCCCcCCcCCHH-HhCCCcCCCEEE
Confidence 45555555555544344443 45555555555555542 2222445555555555555555442222 445555555555
Q ss_pred cCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhh---cCCCCCCEEECCCCCCCcchhhhhhcCCCC--Cc
Q 021196 212 LGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL---HNFTNLEELILDDSDLHISQLLQSIASFTS--LK 286 (316)
Q Consensus 212 l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~---~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~--L~ 286 (316)
+++|.++ . ..|..+..+++|+.|++++|+++ .+|...+ ..+++|+.|+|++|++++ ..+..+..++. ++
T Consensus 119 L~~N~i~-~---~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~~~l~ 192 (361)
T 2xot_A 119 LYNNHIV-V---VDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKN 192 (361)
T ss_dssp CCSSCCC-E---ECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCC-CCHHHHHHSCHHHHT
T ss_pred CCCCccc-E---ECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCc-cCHHHhhhccHhhcc
Confidence 5555554 2 22334445555555555555554 3443233 334555555555555543 22233444443 24
Q ss_pred EEEccCcccc
Q 021196 287 YLSMGFCTLT 296 (316)
Q Consensus 287 ~L~l~~N~l~ 296 (316)
.|++++|.+.
T Consensus 193 ~l~l~~N~~~ 202 (361)
T 2xot_A 193 GLYLHNNPLE 202 (361)
T ss_dssp TEECCSSCEE
T ss_pred eEEecCCCcc
Confidence 4555555443
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=9.6e-20 Score=173.41 Aligned_cols=202 Identities=24% Similarity=0.335 Sum_probs=159.9
Q ss_pred CcEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCC
Q 021196 74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153 (316)
Q Consensus 74 ~~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 153 (316)
.+++.|+++++.+... ..+..+++|+.|+|++|.+.+..+ +..+++|++|+|++|.+.+ +| .+..
T Consensus 43 ~~L~~L~l~~n~i~~l-------~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~-l~-~l~~ 107 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV-------QGIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKD-LS-SLKD 107 (605)
T ss_dssp TTCCCCBCTTCCCCCC-------TTGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCC-CT-TSTT
T ss_pred CCCCEEECcCCCCCCC-------hHHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCC-Ch-hhcc
Confidence 4577888888876432 247889999999999999987654 7899999999999999985 33 7899
Q ss_pred CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCC
Q 021196 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLP 233 (316)
Q Consensus 154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~ 233 (316)
+++|++|+|++|.+.+ ++ .+..+++|+.|+|++|.+++. + .+..+++|+.|+|++|.++ .+++ +..++
T Consensus 108 l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~-----~~~~-l~~l~ 175 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQIS-----DIVP-LAGLT 175 (605)
T ss_dssp CTTCCEEECTTSCCCC-CG--GGGGCTTCSEEECCSSCCCCC--G-GGGSCTTCSEEECCSSCCC-----CCGG-GTTCT
T ss_pred CCCCCEEEecCCCCCC-Cc--cccCCCccCEEECCCCccCCc--h-hhcccCCCCEEECcCCcCC-----Cchh-hccCC
Confidence 9999999999999985 44 688999999999999999985 4 7899999999999999998 3444 89999
Q ss_pred CCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcch--------hhhhh----cCCCCCcEEEccCcccccccCC
Q 021196 234 SLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQ--------LLQSI----ASFTSLKYLSMGFCTLTGALHG 301 (316)
Q Consensus 234 ~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~--------ip~~l----~~~~~L~~L~l~~N~l~g~ip~ 301 (316)
+|+.|+|++|.+++ +| .+..+++|+.|+|++|.+.+.. +|..+ +.....+.+...++...|.++.
T Consensus 176 ~L~~L~Ls~N~i~~-l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l~~l~g~~~~~~~i~~~g~~~~~~i~~ 252 (605)
T 1m9s_A 176 KLQNLYLSKNHISD-LR--ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKW 252 (605)
T ss_dssp TCCEEECCSSCCCB-CG--GGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCCBCSSSCBCCCSEESTTCEEETTEEEC
T ss_pred CCCEEECcCCCCCC-Ch--HHccCCCCCEEEccCCcCcCCcccccccEEecccccccCCCCcCchhcccCCcccCCccee
Confidence 99999999999984 54 6889999999999999987621 12222 1222345555555556666654
Q ss_pred -Cccc
Q 021196 302 -QGKL 305 (316)
Q Consensus 302 -~~~l 305 (316)
+..+
T Consensus 253 ~l~~~ 257 (605)
T 1m9s_A 253 HLPEF 257 (605)
T ss_dssp CCSSC
T ss_pred ccccc
Confidence 4444
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2.5e-19 Score=149.57 Aligned_cols=157 Identities=21% Similarity=0.227 Sum_probs=131.9
Q ss_pred EEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCC
Q 021196 78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157 (316)
Q Consensus 78 ~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 157 (316)
.++++++.+...+. .+ ...+++|++++|.+++..+.. .+..+++|++|++++|.+++..+..|..+++|
T Consensus 15 ~l~~s~n~l~~iP~------~~--~~~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 15 TVDCSNQKLNKIPE------HI--PQYTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp EEECCSSCCSSCCS------CC--CTTCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred EeEeCCCCcccCcc------CC--CCCCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 78999887754322 12 245789999999998875542 37889999999999999998777789999999
Q ss_pred CEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCE
Q 021196 158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT 237 (316)
Q Consensus 158 ~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~ 237 (316)
++|+|++|++++ +++..+..+++|++|+|++|++++..|. .+..+++|++|++++|.++ + ..|..+..+++|+.
T Consensus 84 ~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~---~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 84 NEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQIT-T---VAPGAFDTLHSLST 157 (220)
T ss_dssp CEEECCSSCCCC-CCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCC-C---BCTTTTTTCTTCCE
T ss_pred CEEECCCCccCc-cCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCC-E---ECHHHhcCCCCCCE
Confidence 999999999985 4544799999999999999999996666 8999999999999999998 4 44778999999999
Q ss_pred EECCCCCCCCccch
Q 021196 238 LYLSSTNFKGTVVN 251 (316)
Q Consensus 238 L~l~~n~l~g~~p~ 251 (316)
|++++|.+.+..+.
T Consensus 158 L~L~~N~l~c~c~l 171 (220)
T 2v70_A 158 LNLLANPFNCNCYL 171 (220)
T ss_dssp EECCSCCEECSGGG
T ss_pred EEecCcCCcCCCch
Confidence 99999999876654
No 109
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=1.2e-19 Score=173.16 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=74.0
Q ss_pred CCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCC
Q 021196 205 RKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTS 284 (316)
Q Consensus 205 ~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~ 284 (316)
++|+.|++++|.++ .+| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+.++++
T Consensus 221 ~~L~~L~Ls~N~L~-----~lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~--~lp~~l~~l~~ 285 (622)
T 3g06_A 221 SGLKELIVSGNRLT-----SLP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT--RLPESLIHLSS 285 (622)
T ss_dssp TTCCEEECCSSCCS-----CCC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC--SCCGGGGGSCT
T ss_pred CCCCEEEccCCccC-----cCC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC--cCCHHHhhccc
Confidence 67888888888887 555 45689999999999998 6775 6789999999999998 68999999999
Q ss_pred CcEEEccCcccccccCC-Cccc
Q 021196 285 LKYLSMGFCTLTGALHG-QGKL 305 (316)
Q Consensus 285 L~~L~l~~N~l~g~ip~-~~~l 305 (316)
|+.|+|++|+++|.+|. +..+
T Consensus 286 L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 286 ETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp TCEEECCSCCCCHHHHHHHHHH
T ss_pred cCEEEecCCCCCCcCHHHHHhc
Confidence 99999999999998876 4433
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.82 E-value=2.1e-20 Score=160.31 Aligned_cols=168 Identities=19% Similarity=0.268 Sum_probs=82.0
Q ss_pred CCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCC
Q 021196 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE 183 (316)
Q Consensus 104 ~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~ 183 (316)
++..++++.+.+++... +..+++|++|++++|.++ .++ .+..+++|++|++++|++++ +++ +..+++|+
T Consensus 20 ~l~~l~l~~~~i~~~~~------~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~--l~~l~~L~ 88 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVS------QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP--LKDLTKLE 88 (263)
T ss_dssp HHHHHHHTCSCTTSEEC------HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCSSCC
T ss_pred HHHHHHhcCCCcccccc------hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh--hccCCCCC
Confidence 34444455554443221 344455555555555554 233 34455555555555555542 232 45555555
Q ss_pred EEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEE
Q 021196 184 ELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEEL 263 (316)
Q Consensus 184 ~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L 263 (316)
+|++++|++++ ++. +.. ++|++|++++|.++ .++ .+..+++|+.|++++|++++ ++ .+..+++|++|
T Consensus 89 ~L~L~~N~l~~-l~~--~~~-~~L~~L~L~~N~l~-----~~~-~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L 155 (263)
T 1xeu_A 89 ELSVNRNRLKN-LNG--IPS-ACLSRLFLDNNELR-----DTD-SLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVL 155 (263)
T ss_dssp EEECCSSCCSC-CTT--CCC-SSCCEEECCSSCCS-----BSG-GGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEE
T ss_pred EEECCCCccCC-cCc--ccc-CcccEEEccCCccC-----CCh-hhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEE
Confidence 55555555554 222 112 55555555555554 222 34555555555555555552 32 34455555555
Q ss_pred ECCCCCCCcchhhhhhcCCCCCcEEEccCcccccc
Q 021196 264 ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA 298 (316)
Q Consensus 264 ~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ 298 (316)
++++|++++ . ..+..+++|+.|++++|++++.
T Consensus 156 ~L~~N~i~~-~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 156 DLHGNEITN-T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCB-C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCcc-h--HHhccCCCCCEEeCCCCcccCC
Confidence 555555554 2 3455555555555555555443
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.81 E-value=5.5e-23 Score=194.50 Aligned_cols=195 Identities=17% Similarity=0.164 Sum_probs=158.4
Q ss_pred cCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCC-------------CCcccccccCCCCCCCEEE-eeCc
Q 021196 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH-------------FNNSIFSSLGGLSSLRNLS-LIGN 165 (316)
Q Consensus 100 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n 165 (316)
...++|+.|+|++|.+. .+|.. ++++++|++|++++|. +.+.+|..++.+++|+.|+ ++.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~----i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n 420 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSE----LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHH----HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred ccCccceeccCChhhHH-hhHHH----HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence 56789999999999986 55643 8889999999997774 5667788888888888888 5555
Q ss_pred ccccccCcc-----cccC--CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEE
Q 021196 166 RLIGSIDIK-----GLDS--LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTL 238 (316)
Q Consensus 166 ~l~g~ip~~-----~l~~--l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L 238 (316)
.+. .++.. .+.. ...|+.|++++|.+++ +| .+..+++|+.|++++|.++ .+|..++.+++|+.|
T Consensus 421 ~~~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp--~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L 491 (567)
T 1dce_A 421 YLD-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LC--HLEQLLLVTHLDLSHNRLR-----ALPPALAALRCLEVL 491 (567)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CC--CGGGGTTCCEEECCSSCCC-----CCCGGGGGCTTCCEE
T ss_pred ccc-hhhhhhhhcccccccCccCceEEEecCCCCCC-Cc--CccccccCcEeecCccccc-----ccchhhhcCCCCCEE
Confidence 432 11100 0000 1258999999999998 44 3899999999999999998 889999999999999
Q ss_pred ECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchh-hhhhcCCCCCcEEEccCcccccccCCC----ccccchhhhh
Q 021196 239 YLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL-LQSIASFTSLKYLSMGFCTLTGALHGQ----GKLRVSEAFM 312 (316)
Q Consensus 239 ~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~i-p~~l~~~~~L~~L~l~~N~l~g~ip~~----~~l~~L~~l~ 312 (316)
++++|.+++ +| .++.+++|++|+|++|.+++ .. |..++.+++|+.|+|++|++++.+|.. ..+++|+.|+
T Consensus 492 ~Ls~N~l~~-lp--~l~~l~~L~~L~Ls~N~l~~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 492 QASDNALEN-VD--GVANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp ECCSSCCCC-CG--GGTTCSSCCEEECCSSCCCS-SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred ECCCCCCCC-Cc--ccCCCCCCcEEECCCCCCCC-CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 999999995 76 78999999999999999997 54 999999999999999999999987763 3367777664
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=4.5e-19 Score=147.94 Aligned_cols=153 Identities=22% Similarity=0.269 Sum_probs=129.3
Q ss_pred EEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCC
Q 021196 78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157 (316)
Q Consensus 78 ~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 157 (316)
.++++++++...+. .+ .+++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..|.++++|
T Consensus 15 ~v~c~~~~l~~iP~------~l--~~~l~~L~l~~n~i~~i~~~----~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L 82 (220)
T 2v9t_B 15 IVDCRGKGLTEIPT------NL--PETITEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82 (220)
T ss_dssp EEECTTSCCSSCCS------SC--CTTCCEEECCSSCCCEECTT----SSTTCTTCCEEECCSSCCCEECTTTTTTCSSC
T ss_pred EEEcCCCCcCcCCC------cc--CcCCCEEECCCCcCCCcCHh----HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC
Confidence 57888877644322 12 26899999999999876553 38899999999999999998889999999999
Q ss_pred CEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCE
Q 021196 158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKT 237 (316)
Q Consensus 158 ~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~ 237 (316)
++|+|++|+++ .+|+..+..+++|++|+|++|++++..|. .+..+++|++|++++|.++ + ..+..+..+++|+.
T Consensus 83 ~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~---~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 83 NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQ-T---IAKGTFSPLRAIQT 156 (220)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCS-C---CCTTTTTTCTTCCE
T ss_pred CEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECCCCcCC-E---ECHHHHhCCCCCCE
Confidence 99999999998 57765788999999999999999996666 8999999999999999998 3 33346888999999
Q ss_pred EECCCCCCCCc
Q 021196 238 LYLSSTNFKGT 248 (316)
Q Consensus 238 L~l~~n~l~g~ 248 (316)
|++++|.+...
T Consensus 157 L~L~~N~~~c~ 167 (220)
T 2v9t_B 157 MHLAQNPFICD 167 (220)
T ss_dssp EECCSSCEECS
T ss_pred EEeCCCCcCCC
Confidence 99999998753
No 113
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=5.7e-19 Score=157.68 Aligned_cols=211 Identities=18% Similarity=0.159 Sum_probs=158.9
Q ss_pred EEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccccc-ccCCCCCC
Q 021196 79 LDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLGGLSSL 157 (316)
Q Consensus 79 l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L 157 (316)
++-+++++...+ ..+ .+++++|+|++|.++...+. .|.++++|++|+|++|.+.+.+|. .|.+++++
T Consensus 14 v~C~~~~Lt~iP------~~l--~~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l 81 (350)
T 4ay9_X 14 FLCQESKVTEIP------SDL--PRNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81 (350)
T ss_dssp EEEESTTCCSCC------TTC--CTTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred EEecCCCCCccC------cCc--CCCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence 566666664322 112 35799999999999754332 489999999999999999877765 57889887
Q ss_pred CE-EEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCC-ccccccccchhhh-hcCCCC-
Q 021196 158 RN-LSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGG-TEIAMIDGSKVLQ-SIGSLP- 233 (316)
Q Consensus 158 ~~-L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~-n~l~~~~~~~~p~-~~~~l~- 233 (316)
++ +.++.|++. .+++..+..+++|++|++++|+++... +..+....++..+++.. +.+. .++. .+..+.
T Consensus 82 ~~~l~~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~l~~l~l~~~~~i~-----~l~~~~f~~~~~ 154 (350)
T 4ay9_X 82 HEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIH-----TIERNSFVGLSF 154 (350)
T ss_dssp CEEEEEEETTCC-EECTTSBCCCTTCCEEEEEEECCSSCC-CCTTCCBSSCEEEEEESCTTCC-----EECTTSSTTSBS
T ss_pred hhhhcccCCccc-ccCchhhhhccccccccccccccccCC-chhhcccchhhhhhhccccccc-----cccccchhhcch
Confidence 76 566778887 565558999999999999999998854 43666777888999865 5565 4543 455554
Q ss_pred CCCEEECCCCCCCCccchhhhcCCCCCCEEECCC-CCCCcchhhh-hhcCCCCCcEEEccCcccccccCC-Cccccchhh
Q 021196 234 SLKTLYLSSTNFKGTVVNQELHNFTNLEELILDD-SDLHISQLLQ-SIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEA 310 (316)
Q Consensus 234 ~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~-n~l~g~~ip~-~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~ 310 (316)
.++.|++++|+++ .+|. ......+|+.+++.+ |.++ .+|. .|..+++|++||+++|+++.-.+. +.+++.|+.
T Consensus 155 ~l~~L~L~~N~i~-~i~~-~~f~~~~L~~l~l~~~n~l~--~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~ 230 (350)
T 4ay9_X 155 ESVILWLNKNGIQ-EIHN-SAFNGTQLDELNLSDNNNLE--ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230 (350)
T ss_dssp SCEEEECCSSCCC-EECT-TSSTTEEEEEEECTTCTTCC--CCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEEC
T ss_pred hhhhhcccccccc-CCCh-hhccccchhHHhhccCCccc--CCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhh
Confidence 6899999999998 7887 444667899999986 5565 6775 578999999999999999854443 677776665
Q ss_pred hh
Q 021196 311 FM 312 (316)
Q Consensus 311 l~ 312 (316)
+.
T Consensus 231 l~ 232 (350)
T 4ay9_X 231 RS 232 (350)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=1.1e-19 Score=176.77 Aligned_cols=181 Identities=17% Similarity=0.107 Sum_probs=120.8
Q ss_pred CCCcEEEccCCccCCccccccccccCCCCCCc-----EEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCccccc
Q 021196 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLK-----FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD 177 (316)
Q Consensus 103 ~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~-----~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~ 177 (316)
++++.|+|.+|.+... +.. +.....|+ .++++.|.+. ..+..+..++.|++|+|++|.+. .+|. .+.
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~----~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~-~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA----LLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISA-NIF 244 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCS-CCCG-GGG
T ss_pred CccceEEeeCCCCCcc-hhh----HhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCCh-hhc
Confidence 5678889988887663 221 22222222 2333334443 45777889999999999999998 7887 677
Q ss_pred CCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCC
Q 021196 178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNF 257 (316)
Q Consensus 178 ~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l 257 (316)
.+++|++|+|++|.++ .+|. .+..+++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|. .++.+
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~L~~N~l~-~lp~-~~~~l 315 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLT-----SLPAELGSCFQLKYFYFFDNMVT-TLPW-EFGNL 315 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCS-----SCCSSGGGGTTCSEEECCSSCCC-CCCS-STTSC
T ss_pred CCCCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCC-----ccChhhcCCCCCCEEECCCCCCC-ccCh-hhhcC
Confidence 9999999999999999 5787 8999999999999999998 78999999999999999999997 8998 69999
Q ss_pred CCCCEEECCCCCCCcchhhhhhcCCCC-CcEEEccCcccccccCC
Q 021196 258 TNLEELILDDSDLHISQLLQSIASFTS-LKYLSMGFCTLTGALHG 301 (316)
Q Consensus 258 ~~L~~L~L~~n~l~g~~ip~~l~~~~~-L~~L~l~~N~l~g~ip~ 301 (316)
++|++|+|++|.+++ .+|..+..... +..+++++|.++|.+|.
T Consensus 316 ~~L~~L~L~~N~l~~-~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 316 CNLQFLGVEGNPLEK-QFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp TTCCCEECTTSCCCS-HHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCccEEeCCCCccCC-CChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 999999999999999 88887755421 23366777777777776
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=5.3e-18 Score=145.32 Aligned_cols=150 Identities=21% Similarity=0.269 Sum_probs=124.2
Q ss_pred ccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccC
Q 021196 99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178 (316)
Q Consensus 99 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~ 178 (316)
+..+++|++|++++|.++. ++. +..+++|++|++++|.+++..+ +..+++|++|++++|++++ +|. +..
T Consensus 37 ~~~l~~L~~L~l~~n~i~~-l~~-----l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~--~~~ 105 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQS-LAG-----MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG--IPS 105 (263)
T ss_dssp HHHHTTCSEEECTTSCCCC-CTT-----GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT--CCC
T ss_pred hhhcCcCcEEECcCCCccc-chH-----HhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc--ccc
Confidence 5678899999999998864 332 7888999999999999986444 8899999999999999874 554 333
Q ss_pred CCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCC
Q 021196 179 LGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFT 258 (316)
Q Consensus 179 l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~ 258 (316)
++|++|++++|++++. + .+..+++|+.|++++|.++ .++ .+..+++|+.|++++|++++. . .+..++
T Consensus 106 -~~L~~L~L~~N~l~~~--~-~l~~l~~L~~L~Ls~N~i~-----~~~-~l~~l~~L~~L~L~~N~i~~~--~-~l~~l~ 172 (263)
T 1xeu_A 106 -ACLSRLFLDNNELRDT--D-SLIHLKNLEILSIRNNKLK-----SIV-MLGFLSKLEVLDLHGNEITNT--G-GLTRLK 172 (263)
T ss_dssp -SSCCEEECCSSCCSBS--G-GGTTCTTCCEEECTTSCCC-----BCG-GGGGCTTCCEEECTTSCCCBC--T-TSTTCC
T ss_pred -CcccEEEccCCccCCC--h-hhcCcccccEEECCCCcCC-----CCh-HHccCCCCCEEECCCCcCcch--H-HhccCC
Confidence 8899999999999874 3 6888999999999999997 444 678889999999999999854 3 788899
Q ss_pred CCCEEECCCCCCCc
Q 021196 259 NLEELILDDSDLHI 272 (316)
Q Consensus 259 ~L~~L~L~~n~l~g 272 (316)
+|+.|++++|.+++
T Consensus 173 ~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 173 KVNWIDLTGQKCVN 186 (263)
T ss_dssp CCCEEEEEEEEEEC
T ss_pred CCCEEeCCCCcccC
Confidence 99999999999875
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=2.7e-18 Score=136.98 Aligned_cols=131 Identities=24% Similarity=0.217 Sum_probs=58.9
Q ss_pred CCCcEEECCCCCCC-cccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCE
Q 021196 131 NNLKFLYLDYNHFN-NSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNT 209 (316)
Q Consensus 131 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~ 209 (316)
++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. . .+..+++|++|++++|.+++.+|. .+..+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S-NLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S-SCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h-hhccCCCCCEEECcCCcCchHHHH-HHhhCCCCCE
Confidence 44555555555544 44444444455555555555554432 1 444455555555555555443332 3334444555
Q ss_pred EEcCCccccccccchhh--hhcCCCCCCCEEECCCCCCCCccc--hhhhcCCCCCCEEECCCCCC
Q 021196 210 LYLGGTEIAMIDGSKVL--QSIGSLPSLKTLYLSSTNFKGTVV--NQELHNFTNLEELILDDSDL 270 (316)
Q Consensus 210 L~l~~n~l~~~~~~~~p--~~~~~l~~L~~L~l~~n~l~g~~p--~~~~~~l~~L~~L~L~~n~l 270 (316)
|++++|.++ .+| ..+..+++|++|++++|.+++..+ ...+..+++|++|++++|.+
T Consensus 100 L~Ls~N~l~-----~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNKLK-----DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSSCC-----SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeccCCccC-----cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 555544444 222 344444444444444444442211 02344444444444444444
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=6.5e-18 Score=137.89 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=112.0
Q ss_pred cEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcC
Q 021196 134 KFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLG 213 (316)
Q Consensus 134 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~ 213 (316)
+++++++|.+. .+|..+.. ++++|++++|.+.+..+...+..+++|++|+|++|++++..|. .+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECC
Confidence 78999999996 67876654 8999999999998544433488999999999999999997666 89999999999999
Q ss_pred CccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhh
Q 021196 214 GTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL 276 (316)
Q Consensus 214 ~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip 276 (316)
+|.++ + ..+..+..+++|++|++++|++++..|. .+..+++|++|++++|.+++ ..+
T Consensus 87 ~N~l~-~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c-~c~ 143 (192)
T 1w8a_A 87 ENKIK-E---ISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNC-NCH 143 (192)
T ss_dssp SCCCC-E---ECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCC-SGG
T ss_pred CCcCC-c---cCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccC-cCc
Confidence 99998 4 4445688899999999999999976665 88899999999999999987 444
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=6.7e-18 Score=134.66 Aligned_cols=138 Identities=25% Similarity=0.290 Sum_probs=118.3
Q ss_pred CCCCCcEEEccCCccC-CccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCC
Q 021196 101 PFQQLESLYLIGNNIA-GCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL 179 (316)
Q Consensus 101 ~l~~L~~L~L~~n~~~-~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l 179 (316)
..++|++|++++|.++ +.+|.. +..+++|++|++++|.+++. ..+..+++|++|++++|++.+.+|. .+..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL----TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKL 94 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC----CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHC
T ss_pred CcccCCEEECCCCCCChhhHHHH----HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhC
Confidence 3578999999999998 677753 68899999999999999865 7789999999999999999976775 77779
Q ss_pred CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh----hcCCCCCCCEEECCCCCCCCccch
Q 021196 180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ----SIGSLPSLKTLYLSSTNFKGTVVN 251 (316)
Q Consensus 180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~----~~~~l~~L~~L~l~~n~l~g~~p~ 251 (316)
++|++|++++|.+++......+..+++|++|++++|.++ .+|. .+..+++|++|++++|.+. ++|.
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-----~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-----NLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-----TSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-----chHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 999999999999998432238899999999999999998 4444 7899999999999999987 5664
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.5e-17 Score=135.71 Aligned_cols=136 Identities=23% Similarity=0.294 Sum_probs=116.0
Q ss_pred cEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCccccc-ccCCCCCCCEEEeeCcccccccCcccccCCCCCCE
Q 021196 106 ESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE 184 (316)
Q Consensus 106 ~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~ 184 (316)
+.+++++|.++ .+|.. +. .++++|++++|.+++..+. .++.+++|++|++++|++++..|. .+..+++|++
T Consensus 11 ~~l~~s~~~l~-~ip~~----~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRD----IP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCCS-SCCSC----CC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCE
T ss_pred CEEEcCCCCcC-cCccC----CC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCE
Confidence 78999999984 45542 32 3899999999999866554 488999999999999999976665 8999999999
Q ss_pred EEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhh
Q 021196 185 LDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQEL 254 (316)
Q Consensus 185 L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~ 254 (316)
|+|++|++++..+. .+..+++|++|++++|.++ + ..|..+..+++|++|++++|.+++..+..++
T Consensus 83 L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~---~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~ 147 (192)
T 1w8a_A 83 LQLGENKIKEISNK-MFLGLHQLKTLNLYDNQIS-C---VMPGSFEHLNSLTSLNLASNPFNCNCHLAWF 147 (192)
T ss_dssp EECCSCCCCEECSS-SSTTCTTCCEEECCSSCCC-E---ECTTSSTTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred EECCCCcCCccCHH-HhcCCCCCCEEECCCCcCC-e---eCHHHhhcCCCCCEEEeCCCCccCcCcchHH
Confidence 99999999996555 8999999999999999998 6 5678899999999999999999987765333
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=1e-17 Score=130.84 Aligned_cols=82 Identities=27% Similarity=0.286 Sum_probs=32.2
Q ss_pred CCcEEECCCCCCC-cccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEE
Q 021196 132 NLKFLYLDYNHFN-NSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTL 210 (316)
Q Consensus 132 ~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L 210 (316)
+|++|++++|.++ +.+|..+..+++|++|++++|.+++. . .+..+++|++|++++|.+++.+|. .+..+++|++|
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L 93 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A-NLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHL 93 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T-TCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h-hhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCEE
Confidence 3444444444443 33333334444444444444443321 1 333444444444444444433222 33333344444
Q ss_pred EcCCccc
Q 021196 211 YLGGTEI 217 (316)
Q Consensus 211 ~l~~n~l 217 (316)
++++|.+
T Consensus 94 ~ls~N~i 100 (149)
T 2je0_A 94 NLSGNKI 100 (149)
T ss_dssp ECTTSCC
T ss_pred ECCCCcC
Confidence 4444433
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=2e-17 Score=129.21 Aligned_cols=128 Identities=22% Similarity=0.236 Sum_probs=85.6
Q ss_pred CCCCCEEEeeCcccc-cccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCC
Q 021196 154 LSSLRNLSLIGNRLI-GSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSL 232 (316)
Q Consensus 154 l~~L~~L~L~~n~l~-g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l 232 (316)
.++|++|++++|.+. +.+|. .+..+++|++|++++|.+++. . .+..+++|++|++++|.++ + .+|..+..+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~n~i~-~---~~~~~~~~l 87 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--A-NLPKLNKLKKLELSDNRVS-G---GLEVLAEKC 87 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--T-TCCCCTTCCEEECCSSCCC-S---CTHHHHHHC
T ss_pred CccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--h-hhhcCCCCCEEECCCCccc-c---hHHHHhhhC
Confidence 356777777777776 56665 667777777777777777664 3 6667777777777777776 3 366666667
Q ss_pred CCCCEEECCCCCCCCccc-hhhhcCCCCCCEEECCCCCCCcchhh---hhhcCCCCCcEEEcc
Q 021196 233 PSLKTLYLSSTNFKGTVV-NQELHNFTNLEELILDDSDLHISQLL---QSIASFTSLKYLSMG 291 (316)
Q Consensus 233 ~~L~~L~l~~n~l~g~~p-~~~~~~l~~L~~L~L~~n~l~g~~ip---~~l~~~~~L~~L~l~ 291 (316)
++|++|++++|.+++ +| ...+..+++|++|++++|.+++ ..+ ..+..+++|+.|+++
T Consensus 88 ~~L~~L~ls~N~i~~-~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 88 PNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCCEEECTTSCCCS-HHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTB
T ss_pred CCCCEEECCCCcCCC-hHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCC
Confidence 777777777777764 22 1256677777777777777764 322 356667777777765
No 122
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=1.7e-18 Score=164.87 Aligned_cols=140 Identities=16% Similarity=0.168 Sum_probs=90.5
Q ss_pred CCCCCCEEEeeCcccccccCcccccC-CCCCCEEEcC----CCcCCCc-----cccccccCCCCCCEEEcCCcc--cccc
Q 021196 153 GLSSLRNLSLIGNRLIGSIDIKGLDS-LGNLEELDMS----DNAINNL-----VIPKDYRGLRKLNTLYLGGTE--IAMI 220 (316)
Q Consensus 153 ~l~~L~~L~L~~n~l~g~ip~~~l~~-l~~L~~L~L~----~n~~~~~-----~p~~~~~~l~~L~~L~l~~n~--l~~~ 220 (316)
.+++|++|+++.|.+++..+. .+.. +++|+.|+++ .|.+++. ++. .+..+++|++|++++|. ++ +
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~-~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~~~~~~l~-~ 452 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLE-SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS-LLIGCKKLRRFAFYLRQGGLT-D 452 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHH-HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH-HHHHCTTCCEEEEECCGGGCC-H
T ss_pred hCccCeEEEeecCCccHHHHH-HHHhhCCCCcEEEEeecCCCccccCchHHHHHHH-HHHhCCCCCEEEEecCCCCcc-H
Confidence 456666666666666554443 3333 6677777774 5566652 222 35557777777776433 44 2
Q ss_pred ccchhhhhc-CCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccc
Q 021196 221 DGSKVLQSI-GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA 298 (316)
Q Consensus 221 ~~~~~p~~~-~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ 298 (316)
..+..+ ..+++|+.|++++|.+++......+..+++|++|++++|.+++..++..+..+++|++|++++|++++.
T Consensus 453 ---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 453 ---LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp ---HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred ---HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 233333 347788888888888876333335677888888888888887644666667788888888888887755
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=4e-16 Score=127.35 Aligned_cols=107 Identities=24% Similarity=0.375 Sum_probs=49.9
Q ss_pred CCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEE
Q 021196 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLY 211 (316)
Q Consensus 132 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~ 211 (316)
+|++|++++|.++ .+|..+..+++|++|++++|.+++ +++..|.++++|++|+|++|++++..+. .+..+++|++|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~l~~i~~~-~f~~l~~L~~L~ 108 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSYNRLRCIPPR-TFDGLKSLRLLS 108 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEE
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE-eCHhHccCCCCCCEEECCCCccCEeCHH-HhCCCCCCCEEE
Confidence 4555555555554 344445555555555555555542 2222444555555555555555443222 444444444555
Q ss_pred cCCccccccccchhhh-hcCCCCCCCEEECCCCCCC
Q 021196 212 LGGTEIAMIDGSKVLQ-SIGSLPSLKTLYLSSTNFK 246 (316)
Q Consensus 212 l~~n~l~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~ 246 (316)
+++|.++ .+|. .+..+++|+.|++++|.+.
T Consensus 109 L~~N~l~-----~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 109 LHGNDIS-----VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCSSCCC-----BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCC-----eeChhhhhcCccccEEEeCCCCee
Confidence 4444444 2222 2344444444444444443
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=4.1e-16 Score=125.32 Aligned_cols=133 Identities=23% Similarity=0.274 Sum_probs=102.0
Q ss_pred CcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEc
Q 021196 133 LKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYL 212 (316)
Q Consensus 133 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l 212 (316)
.+.++++++.++ .+|..+ .++|++|++++|++.+ +|+..+..+++|++|++++|.+++. ++..+..+++|++|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEEC
Confidence 578888888887 456543 3688999999988874 5554678888899999999988874 4436788888999999
Q ss_pred CCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhh
Q 021196 213 GGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL 276 (316)
Q Consensus 213 ~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip 276 (316)
++|.++ + ..+..+..+++|++|++++|.++ .+|...+..+++|++|++++|.+.+ ..|
T Consensus 84 ~~N~l~-~---~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~-~~~ 141 (177)
T 2o6r_A 84 HENKLQ-S---LPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC-SCP 141 (177)
T ss_dssp CSSCCC-C---CCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC-CHH
T ss_pred CCCCcc-c---cCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeec-cCc
Confidence 988887 3 23345678888899999888888 5666467788888888888888887 554
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=8.8e-16 Score=123.39 Aligned_cols=132 Identities=19% Similarity=0.233 Sum_probs=99.4
Q ss_pred CcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCE
Q 021196 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE 184 (316)
Q Consensus 105 L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~ 184 (316)
.+.+++++++++.. |. .-.++|++|++++|.+++..+..+..+++|++|++++|+++ .+|+..+..+++|++
T Consensus 9 ~~~l~~~~~~l~~~-p~------~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~ 80 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-PT------GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTI 80 (177)
T ss_dssp TTEEECCSSCCSSC-CT------TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCEEEecCCCCccC-CC------CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCE
Confidence 46788888877543 32 22367888888888888666666788888888888888887 455546788888888
Q ss_pred EEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh-hcCCCCCCCEEECCCCCCCCccc
Q 021196 185 LDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ-SIGSLPSLKTLYLSSTNFKGTVV 250 (316)
Q Consensus 185 L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~g~~p 250 (316)
|++++|.+++..+. .+..+++|++|++++|.++ .+|. .+..+++|++|++++|.+++..|
T Consensus 81 L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~-----~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 81 LYLHENKLQSLPNG-VFDKLTQLKELALDTNQLK-----SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp EECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCS-----CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EECCCCCccccCHH-HhhCCcccCEEECcCCcce-----EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88888888874433 6778888888888888887 4444 45778888888888888887665
No 126
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=9.5e-18 Score=159.70 Aligned_cols=131 Identities=14% Similarity=0.023 Sum_probs=63.4
Q ss_pred CCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECC-----------CCCCC
Q 021196 178 SLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLS-----------STNFK 246 (316)
Q Consensus 178 ~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~-----------~n~l~ 246 (316)
.+++|++|++++|.+++..+...+..+++|++|+++ +.+.++ .++.....+++|++|+++ .|.++
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~---~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDR---GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHH---HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHH---HHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 344445555555444433222123444555555554 223212 333333445556666665 23444
Q ss_pred CccchhhhcCCCCCCEEECCCCCCCcchhhhhhcC-CCCCcEEEcc----Ccccccc-----cCC-Cccccchhhhhh
Q 021196 247 GTVVNQELHNFTNLEELILDDSDLHISQLLQSIAS-FTSLKYLSMG----FCTLTGA-----LHG-QGKLRVSEAFMI 313 (316)
Q Consensus 247 g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~-~~~L~~L~l~----~N~l~g~-----ip~-~~~l~~L~~l~i 313 (316)
+.........+++|++|+++.|.+++ ..+..+.. +++|+.|+++ .|++++. ++. +..|++|+.|++
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L 443 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVYVSDITN-ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF 443 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCH-HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHhhCccCeEEEeecCCccH-HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEE
Confidence 32222123445666666666666665 44445544 6666666664 4555542 333 445666666654
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=1.5e-18 Score=164.23 Aligned_cols=177 Identities=20% Similarity=0.213 Sum_probs=138.1
Q ss_pred cccccCCCCCcEEEccCCc-------------cCCccccccccccCCCCCCcEEE-CCCCCCCccccc------ccCC--
Q 021196 96 ASLFTPFQQLESLYLIGNN-------------IAGCVENEGLDTLSRLNNLKFLY-LDYNHFNNSIFS------SLGG-- 153 (316)
Q Consensus 96 ~~~~~~l~~L~~L~L~~n~-------------~~~~~~~~~~~~l~~l~~L~~L~-L~~n~l~~~~p~------~~~~-- 153 (316)
+..++++++|+.|++++|. ..+.+|. .++++++|+.|+ ++.|.+. .++. .+..
T Consensus 365 p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~----~l~~l~~L~~L~~l~~n~~~-~L~~l~l~~n~i~~l~ 439 (567)
T 1dce_A 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE----TLQYFSTLKAVDPMRAAYLD-DLRSKFLLENSVLKME 439 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH----HHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHH----HHHHHHhcccCcchhhcccc-hhhhhhhhcccccccC
Confidence 3457788899999997764 3444443 367778888888 5555332 1110 0000
Q ss_pred CCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCC
Q 021196 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLP 233 (316)
Q Consensus 154 l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~ 233 (316)
...|++|++++|.+++ +|. +..+++|+.|+|++|.++ .+|. .+..+++|+.|++++|.++ .+| .++.++
T Consensus 440 ~~~L~~L~Ls~n~l~~-lp~--~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-----~lp-~l~~l~ 508 (567)
T 1dce_A 440 YADVRVLHLAHKDLTV-LCH--LEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALE-----NVD-GVANLP 508 (567)
T ss_dssp HTTCSEEECTTSCCSS-CCC--GGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCC-----CCG-GGTTCS
T ss_pred ccCceEEEecCCCCCC-CcC--ccccccCcEeecCccccc-ccch-hhhcCCCCCEEECCCCCCC-----CCc-ccCCCC
Confidence 1259999999999985 773 899999999999999999 5787 9999999999999999998 677 899999
Q ss_pred CCCEEECCCCCCCCcc-chhhhcCCCCCCEEECCCCCCCcchhh---hhhcCCCCCcEEEc
Q 021196 234 SLKTLYLSSTNFKGTV-VNQELHNFTNLEELILDDSDLHISQLL---QSIASFTSLKYLSM 290 (316)
Q Consensus 234 ~L~~L~l~~n~l~g~~-p~~~~~~l~~L~~L~L~~n~l~g~~ip---~~l~~~~~L~~L~l 290 (316)
+|+.|++++|++++.. |. .++.+++|+.|++++|.+++ ..| ..+..+++|+.|++
T Consensus 509 ~L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~-~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 509 RLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGG-SSSCTTHHHHHCTTCSEEEC
T ss_pred CCcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCC-CccHHHHHHHHCcccCccCC
Confidence 9999999999999665 76 89999999999999999986 433 23445899999875
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.67 E-value=3.8e-19 Score=145.93 Aligned_cols=151 Identities=21% Similarity=0.279 Sum_probs=84.3
Q ss_pred CCCcEEECCCCCCCccccc------ccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCC
Q 021196 131 NNLKFLYLDYNHFNNSIFS------SLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGL 204 (316)
Q Consensus 131 ~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l 204 (316)
..++.++++.+.++|.+|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++. +|. .+..+
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~~-l~~-~~~~~ 92 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIKK-IEN-LDAVA 92 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEECS-CSS-HHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCccc-ccc-hhhcC
Confidence 3344444444444443333 55555566666666665553 44 45555666666666666553 444 44445
Q ss_pred CCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccch-hhhcCCCCCCEEECCCCCCCcchhhh------
Q 021196 205 RKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVN-QELHNFTNLEELILDDSDLHISQLLQ------ 277 (316)
Q Consensus 205 ~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~-~~~~~l~~L~~L~L~~n~l~g~~ip~------ 277 (316)
++|++|++++|.++ .+| .+..+++|++|++++|++++ ++. ..+..+++|++|++++|.+++ .+|.
T Consensus 93 ~~L~~L~L~~N~l~-----~l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~ 164 (198)
T 1ds9_A 93 DTLEELWISYNQIA-----SLS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYN-DYKENNATSE 164 (198)
T ss_dssp HHCSEEEEEEEECC-----CHH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHH-HHHTTTTHHH
T ss_pred CcCCEEECcCCcCC-----cCC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCcccc-ccccccchHH
Confidence 56666666666665 344 35555666666666666653 222 355666666666666666655 4443
Q ss_pred ----hhcCCCCCcEEEccCcccc
Q 021196 278 ----SIASFTSLKYLSMGFCTLT 296 (316)
Q Consensus 278 ----~l~~~~~L~~L~l~~N~l~ 296 (316)
.+..+++|+.|| +|.++
T Consensus 165 ~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 165 YRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHHhCCCcEEEC--CcccC
Confidence 266777777776 55554
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=8.9e-16 Score=125.26 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=111.2
Q ss_pred CcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEc
Q 021196 133 LKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYL 212 (316)
Q Consensus 133 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l 212 (316)
-+++++++|.++ .+|..+. ++|++|++++|.++ .+|. .+.++++|++|+|++|.+++..+. .|..+++|++|++
T Consensus 12 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~L 85 (193)
T 2wfh_A 12 DTVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQ-SFSNMTQLLTLIL 85 (193)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEEC
T ss_pred CCEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHh-HccCCCCCCEEEC
Confidence 368999999988 6776653 68999999999997 7885 899999999999999999985544 8999999999999
Q ss_pred CCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCc
Q 021196 213 GGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHI 272 (316)
Q Consensus 213 ~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g 272 (316)
++|.++ + ..|..+..+++|++|++++|.++ .+|...+..+++|+.|++++|.+..
T Consensus 86 s~N~l~-~---i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 86 SYNRLR-C---IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CSSCCC-B---CCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCccC-E---eCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeec
Confidence 999998 4 33457899999999999999998 6776678899999999999999875
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.65 E-value=3.2e-16 Score=125.88 Aligned_cols=133 Identities=18% Similarity=0.195 Sum_probs=80.7
Q ss_pred cCCCCCCcEEECCCCCCCcccccccCCC-CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCC
Q 021196 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGL-SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLR 205 (316)
Q Consensus 127 l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~ 205 (316)
+.++++|++|++++|.++ .+|. +..+ ++|++|++++|.+++ ++ .+..+++|++|++++|.+++ +|+..+..++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~~--~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~ 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-LD--GFPLLRRLKTLLVNNNRICR-IGEGLDQALP 88 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-EC--CCCCCSSCCEEECCSSCCCE-ECSCHHHHCT
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-cc--ccccCCCCCEEECCCCcccc-cCcchhhcCC
Confidence 445566666666666665 2333 3333 366666666666653 22 56666677777777777665 3432446666
Q ss_pred CCCEEEcCCccccccccchhhh--hcCCCCCCCEEECCCCCCCCccchh---hhcCCCCCCEEECCCCCCC
Q 021196 206 KLNTLYLGGTEIAMIDGSKVLQ--SIGSLPSLKTLYLSSTNFKGTVVNQ---ELHNFTNLEELILDDSDLH 271 (316)
Q Consensus 206 ~L~~L~l~~n~l~~~~~~~~p~--~~~~l~~L~~L~l~~n~l~g~~p~~---~~~~l~~L~~L~L~~n~l~ 271 (316)
+|++|++++|.++ .+|. .+..+++|+.|++++|.++ .+|.. .+..+++|+.|++++|.+.
T Consensus 89 ~L~~L~L~~N~i~-----~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLV-----ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCC-----CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCC-----cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777777777665 4554 5666677777777777766 45542 3566677777777776654
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=3.1e-16 Score=126.00 Aligned_cols=134 Identities=22% Similarity=0.323 Sum_probs=113.1
Q ss_pred ccCCCCCCCEEEeeCcccccccCcccccCCC-CCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhh
Q 021196 150 SLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG-NLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQS 228 (316)
Q Consensus 150 ~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~-~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~ 228 (316)
.+.++++|++|++++|++. .+| .+..+. +|++|++++|.+++. . .+..+++|++|++++|.++ .+|+.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~--~~~~~~~~L~~L~Ls~N~l~~~--~-~l~~l~~L~~L~Ls~N~l~-----~~~~~ 82 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIE--NLGATLDQFDAIDFSDNEIRKL--D-GFPLLRRLKTLLVNNNRIC-----RIGEG 82 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCC--CGGGGTTCCSEEECCSSCCCEE--C-CCCCCSSCCEEECCSSCCC-----EECSC
T ss_pred hcCCcCCceEEEeeCCCCc-hhH--HhhhcCCCCCEEECCCCCCCcc--c-ccccCCCCCEEECCCCccc-----ccCcc
Confidence 3567889999999999998 565 345554 999999999999984 4 7899999999999999998 55644
Q ss_pred -cCCCCCCCEEECCCCCCCCccch-hhhcCCCCCCEEECCCCCCCcchhhhh----hcCCCCCcEEEccCccccc
Q 021196 229 -IGSLPSLKTLYLSSTNFKGTVVN-QELHNFTNLEELILDDSDLHISQLLQS----IASFTSLKYLSMGFCTLTG 297 (316)
Q Consensus 229 -~~~l~~L~~L~l~~n~l~g~~p~-~~~~~l~~L~~L~L~~n~l~g~~ip~~----l~~~~~L~~L~l~~N~l~g 297 (316)
+..+++|++|++++|.++ .+|. ..+..+++|++|++++|.++ .+|.. +..+++|+.||++.|....
T Consensus 83 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~--~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT--NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG--GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC--CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 488999999999999996 6664 46889999999999999997 46664 8899999999999998754
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.61 E-value=1.8e-18 Score=141.86 Aligned_cols=160 Identities=25% Similarity=0.267 Sum_probs=128.3
Q ss_pred ccCCCCCcEEEccCCccCCccccc--cccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccc
Q 021196 99 FTPFQQLESLYLIGNNIAGCVENE--GLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL 176 (316)
Q Consensus 99 ~~~l~~L~~L~L~~n~~~~~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l 176 (316)
+.....++.++++.+.+.|.+|.. ....+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|. .+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hh
Confidence 344567777788888888876641 11247889999999999999986 66 7888999999999999988 6776 67
Q ss_pred cCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh--hhcCCCCCCCEEECCCCCCCCccch---
Q 021196 177 DSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL--QSIGSLPSLKTLYLSSTNFKGTVVN--- 251 (316)
Q Consensus 177 ~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p--~~~~~l~~L~~L~l~~n~l~g~~p~--- 251 (316)
..+++|++|++++|++++ +| .+..+++|++|++++|.++ .++ ..+..+++|++|++++|.+++.+|.
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~--~~~~l~~L~~L~l~~N~i~-----~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 161 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS--GIEKLVNLRVLYMSNNKIT-----NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA 161 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH--HHHHHHHSSEEEESEEECC-----CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTT
T ss_pred hcCCcCCEEECcCCcCCc-CC--ccccCCCCCEEECCCCcCC-----chhHHHHHhcCCCCCEEEecCCccccccccccc
Confidence 778899999999999998 33 5788899999999999997 444 4788999999999999999765543
Q ss_pred ------hhhcCCCCCCEEECCCCCCCc
Q 021196 252 ------QELHNFTNLEELILDDSDLHI 272 (316)
Q Consensus 252 ------~~~~~l~~L~~L~L~~n~l~g 272 (316)
..+..+++|+.|| +|.++.
T Consensus 162 ~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 162 TSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred hHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 2377899999987 666653
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=1.3e-15 Score=134.61 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=142.6
Q ss_pred CCCCcEEEccCCccCC-------------------ccccccccccCC--------CCCCcEEECCCCCCCcccccccCCC
Q 021196 102 FQQLESLYLIGNNIAG-------------------CVENEGLDTLSR--------LNNLKFLYLDYNHFNNSIFSSLGGL 154 (316)
Q Consensus 102 l~~L~~L~L~~n~~~~-------------------~~~~~~~~~l~~--------l~~L~~L~L~~n~l~~~~p~~~~~l 154 (316)
+++|+.|||++|.+.. .+|. ..|.+ +++|+++++.+ .++..-+..|.++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~---~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA---YAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECT---TTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCH---HHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence 6778888888887761 1122 34566 88888888888 7765555568888
Q ss_pred CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcC-------C-------------------Cccccc---------
Q 021196 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAI-------N-------------------NLVIPK--------- 199 (316)
Q Consensus 155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~-------~-------------------~~~p~~--------- 199 (316)
++|+++++..|.+. .+++..|..+.++..+.+..+.. . +.++..
T Consensus 124 ~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 124 DNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp TTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred cccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 88888888888776 56666777776666666554211 0 000000
Q ss_pred -----------------cc-cCCCCCCEEEcCCccccccccchhhh-hcCCCCCCCEEECCCCCCCCccchhhhcCCCCC
Q 021196 200 -----------------DY-RGLRKLNTLYLGGTEIAMIDGSKVLQ-SIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNL 260 (316)
Q Consensus 200 -----------------~~-~~l~~L~~L~l~~n~l~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L 260 (316)
.+ ..+++|+.+++++|+++ .+|+ .|.++++|+.+++.+| ++ .++...|.++++|
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-----~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L 275 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-----TIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRL 275 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-----EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTC
T ss_pred ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-----eecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhc
Confidence 00 12789999999999987 6665 6889999999999998 66 7888899999999
Q ss_pred C-EEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccccchhhhh
Q 021196 261 E-ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFM 312 (316)
Q Consensus 261 ~-~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l~~L~~l~ 312 (316)
+ .+++.+ .++. .-+..|.++++|+.+++++|+++.--+. +.+|++|+.++
T Consensus 276 ~~~l~l~~-~l~~-I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 276 AGTLELPA-SVTA-IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEEEEECT-TCCE-ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cEEEEEcc-cceE-EchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 9 999998 6663 3347899999999999999999854444 89999998764
No 134
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.57 E-value=7e-17 Score=153.71 Aligned_cols=205 Identities=13% Similarity=0.071 Sum_probs=113.2
Q ss_pred CCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcc-cccccCCCCCCCEEEeeC---------cccccc
Q 021196 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-IFSSLGGLSSLRNLSLIG---------NRLIGS 170 (316)
Q Consensus 101 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~---------n~l~g~ 170 (316)
.+++|++|++++|.+++.... ..+.++++|++|++++| +... ++.....+++|++|+++. +.+++.
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~---~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLV---KLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHH---HHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred hhCCCCEEEccCCCCCHHHHH---HHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 467888888888876543222 12456777777777776 3322 222223467777777733 333322
Q ss_pred cCcccccCCCCCCEEEcCCCcCCCcccccccc-CCCCCCEEEcC--C----ccccccc-cchhhhhcCCCCCCCEEECCC
Q 021196 171 IDIKGLDSLGNLEELDMSDNAINNLVIPKDYR-GLRKLNTLYLG--G----TEIAMID-GSKVLQSIGSLPSLKTLYLSS 242 (316)
Q Consensus 171 ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~-~l~~L~~L~l~--~----n~l~~~~-~~~~p~~~~~l~~L~~L~l~~ 242 (316)
........+++|++|+++.|.+++..+. .+. .+++|+.|+++ + +.++... ...++..+..+++|+.|++++
T Consensus 363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~-~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFCRQMTNAALI-TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESCCCHHHHH-HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHhchhHHHHHHhcCCcCHHHHH-HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 1111112366777777766766655444 332 46677777776 2 3343100 013344455666777777765
Q ss_pred CCCCCccchhhhcC-CCCCCEEECCCCCCCcchhhhhh-cCCCCCcEEEccCcccccccCC--Cccccchhhhhh
Q 021196 243 TNFKGTVVNQELHN-FTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMGFCTLTGALHG--QGKLRVSEAFMI 313 (316)
Q Consensus 243 n~l~g~~p~~~~~~-l~~L~~L~L~~n~l~g~~ip~~l-~~~~~L~~L~l~~N~l~g~ip~--~~~l~~L~~l~i 313 (316)
.+++..+. .+.. +++|++|++++|.+++ ..+..+ ..+++|++|++++|++++..+. ...+++|+.|++
T Consensus 442 -~l~~~~~~-~l~~~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 442 -LLTDKVFE-YIGTYAKKMEMLSVAFAGDSD-LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513 (594)
T ss_dssp -SCCHHHHH-HHHHHCTTCCEEEEESCCSSH-HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred -cccHHHHH-HHHHhchhccEeeccCCCCcH-HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence 55544333 3333 6677777777777765 333333 5577777777777777544332 344666666554
No 135
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.56 E-value=4.1e-16 Score=140.04 Aligned_cols=194 Identities=15% Similarity=0.092 Sum_probs=132.8
Q ss_pred CCCCcEEEccCCccCCccccccccccC-CCCCCcEEECCCCCCCcccccccC-CCCCCCEEEeeCcccccccCcccc---
Q 021196 102 FQQLESLYLIGNNIAGCVENEGLDTLS-RLNNLKFLYLDYNHFNNSIFSSLG-GLSSLRNLSLIGNRLIGSIDIKGL--- 176 (316)
Q Consensus 102 l~~L~~L~L~~n~~~~~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~g~ip~~~l--- 176 (316)
+++|++|++++|.++..........+. ..++|++|+|++|.++......+. .+++|++|+|++|.++..-.. .+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~-~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK-DLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH-HHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH-HHHHH
Confidence 467999999999987654433223334 337899999999998765444433 457899999999998643221 22
Q ss_pred --cCCCCCCEEEcCCCcCCCc----cccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccc
Q 021196 177 --DSLGNLEELDMSDNAINNL----VIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVV 250 (316)
Q Consensus 177 --~~l~~L~~L~L~~n~~~~~----~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p 250 (316)
...++|++|+|++|.++.. ++. .+...++|++|++++|.+++.+...++..+...++|++|++++|.+++.-.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 3567899999999998753 222 456788999999999998733333556778888899999999999974321
Q ss_pred h---hhhcCCCCCCEEECCCCCCCcchhhhhhcCC---C--CCcEEE--ccCcccccc
Q 021196 251 N---QELHNFTNLEELILDDSDLHISQLLQSIASF---T--SLKYLS--MGFCTLTGA 298 (316)
Q Consensus 251 ~---~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~---~--~L~~L~--l~~N~l~g~ 298 (316)
. ..+...++|++|+|++|.++. .-...+..+ . .|+.+. +..|.++..
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~-~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSS-EGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCH-HHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCH-HHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 1 245567889999999999986 444455433 2 267777 667766543
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.56 E-value=6.1e-16 Score=138.93 Aligned_cols=114 Identities=17% Similarity=0.164 Sum_probs=49.5
Q ss_pred CCCcEEECCCCCCCccccccc-----CCCCCCCEEEeeCcccccc----cCcccccCCCCCCEEEcCCCcCCCcc----c
Q 021196 131 NNLKFLYLDYNHFNNSIFSSL-----GGLSSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMSDNAINNLV----I 197 (316)
Q Consensus 131 ~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~g~----ip~~~l~~l~~L~~L~L~~n~~~~~~----p 197 (316)
++|++|+|++|.++......+ ...++|++|+|++|.++.. ++. .+...++|++|+|++|.++... .
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 345555555555543322222 1234455555555554321 111 2344445555555555544321 1
Q ss_pred cccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCC
Q 021196 198 PKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFK 246 (316)
Q Consensus 198 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~ 246 (316)
. .+...++|++|++++|.+++.....++..+...++|++|++++|.++
T Consensus 205 ~-~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 205 A-QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp H-HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred H-HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 1 33344455555555555542211223333444445555555555554
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.56 E-value=1.3e-16 Score=151.88 Aligned_cols=107 Identities=18% Similarity=0.095 Sum_probs=47.3
Q ss_pred CCCCcEEEccCC-ccCCc-cccccccccCCCCCCcEEECCCCCCCccccccc----CCCCCCCEEEeeCcc--cccccCc
Q 021196 102 FQQLESLYLIGN-NIAGC-VENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL----GGLSSLRNLSLIGNR--LIGSIDI 173 (316)
Q Consensus 102 l~~L~~L~L~~n-~~~~~-~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~L~~n~--l~g~ip~ 173 (316)
+++|++|++++| .++.. ++. .+.++++|++|++++|.+++..+..+ ..+++|++|++++|. +......
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~----~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAA----IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHH----HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHH----HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 455666666555 22221 111 12345566666666655543322222 244566666666554 1111000
Q ss_pred ccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcC
Q 021196 174 KGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLG 213 (316)
Q Consensus 174 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~ 213 (316)
....++++|++|++++|...+.++. .+..+++|++|+++
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTG 243 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECS
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccc
Confidence 0123345666666665522111333 44455555555543
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=5.5e-14 Score=112.16 Aligned_cols=106 Identities=21% Similarity=0.283 Sum_probs=85.7
Q ss_pred CCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh-hcCCCCC
Q 021196 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ-SIGSLPS 234 (316)
Q Consensus 156 ~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~-~~~~l~~ 234 (316)
..+++++++|.++ .+|. .+ .++|++|+|++|++++..|. .+..+++|++|++++|+++ .+|+ .+..+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~-~~--~~~l~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~l~~~~f~~l~~ 79 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPT-GI--PTTTQVLYLYDNQITKLEPG-VFDRLTQLTRLDLDNNQLT-----VLPAGVFDKLTQ 79 (170)
T ss_dssp ETTEEECTTSCCS-SCCS-CC--CTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCC-----CCCTTTTTTCTT
T ss_pred CCCEEEeCCCCcC-ccCc-cC--CCCCcEEEcCCCcCCccChh-hhcCcccCCEEECCCCCcC-----ccChhhccCCCC
Confidence 4578899999887 5775 44 37889999999999886555 8888999999999999987 4444 5678889
Q ss_pred CCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCc
Q 021196 235 LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHI 272 (316)
Q Consensus 235 L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g 272 (316)
|++|++++|+++ .+|...+..+++|++|+|++|.++.
T Consensus 80 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 80 LTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCEEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999999999998 4655578888999999999998875
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=3.8e-14 Score=125.25 Aligned_cols=202 Identities=16% Similarity=0.162 Sum_probs=147.3
Q ss_pred CcEEEEEcCCCCcc--ccc--c-----------cccccccccC--------CCCCcEEEccCCccCCccccccccccCCC
Q 021196 74 GRVIKLDLRDTRNW--ESA--E-----------WYMNASLFTP--------FQQLESLYLIGNNIAGCVENEGLDTLSRL 130 (316)
Q Consensus 74 ~~v~~l~L~~~~~~--~~~--~-----------~~~~~~~~~~--------l~~L~~L~L~~n~~~~~~~~~~~~~l~~l 130 (316)
.+++.|||++|.+. ... . ..++...|.. +++|+.++|.. .++. ++. .+|.++
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~-I~~---~aF~~~ 123 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKN-IED---AAFKGC 123 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCE-ECT---TTTTTC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccc-hhH---HHhhcC
Confidence 45777787777654 100 0 0234556777 99999999988 6654 333 348999
Q ss_pred CCCcEEECCCCCCCcccccccCCCCCCCEEEeeCccc------------c--------------cccCccc---------
Q 021196 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL------------I--------------GSIDIKG--------- 175 (316)
Q Consensus 131 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l------------~--------------g~ip~~~--------- 175 (316)
++|+++++++|.+....+..|.++.++.++....+.. . +.++...
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~ 203 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD 203 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence 9999999999988755666677776666666544211 0 0000000
Q ss_pred -----------------c-cCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhcCCCCCCC
Q 021196 176 -----------------L-DSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIGSLPSLK 236 (316)
Q Consensus 176 -----------------l-~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~l~~L~ 236 (316)
+ ..+++|+.++|++|+++. ++...|.++++|+.+++..| ++ .++ .+|.++++|+
T Consensus 204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n-i~-----~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN-LK-----TIGQRVFSNCGRLA 276 (329)
T ss_dssp CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT-CC-----EECTTTTTTCTTCC
T ss_pred cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc-cc-----eehHHHhhCChhcc
Confidence 0 127899999999999886 66669999999999999998 65 454 4789999999
Q ss_pred -EEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEc
Q 021196 237 -TLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 290 (316)
Q Consensus 237 -~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l 290 (316)
.+++.+ .++ .|+...|.++++|+.+++.+|.++. --+..|.++++|+.+..
T Consensus 277 ~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~-I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 277 GTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITT-LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCE-ECTTTTCTTCCCCEEEC
T ss_pred EEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCc-cchhhhcCCcchhhhcc
Confidence 999988 676 7887799999999999999999984 33457899999998853
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=1.2e-13 Score=110.59 Aligned_cols=105 Identities=19% Similarity=0.304 Sum_probs=88.4
Q ss_pred CCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhh-hcCCCCCC
Q 021196 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQ-SIGSLPSL 235 (316)
Q Consensus 157 L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~-~~~~l~~L 235 (316)
-+.+++++|++. .+|. .+. ++|++|+|++|++++..|. .+..+++|++|++++|+++ .+|. .+.++++|
T Consensus 14 ~~~l~~~~n~l~-~iP~-~~~--~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~i~~~~~~~l~~L 83 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPA-GIP--TDKQRLWLNNNQITKLEPG-VFDHLVNLQQLYFNSNKLT-----AIPTGVFDKLTQL 83 (174)
T ss_dssp SSEEECCSSCCS-SCCS-CCC--TTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTC
T ss_pred CcEEEeCCCCCC-ccCC-CcC--CCCcEEEeCCCCccccCHH-HhcCCcCCCEEECCCCCCC-----ccChhHhCCcchh
Confidence 478999999985 7886 443 7899999999999986565 8899999999999999998 5655 46889999
Q ss_pred CEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCc
Q 021196 236 KTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHI 272 (316)
Q Consensus 236 ~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g 272 (316)
++|++++|+++ .+|...+..+++|++|++++|.+..
T Consensus 84 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 84 TQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred hEEECCCCccc-eeCHHHhccccCCCEEEeCCCCccc
Confidence 99999999998 5666568899999999999999875
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=2.7e-13 Score=108.17 Aligned_cols=105 Identities=21% Similarity=0.306 Sum_probs=67.5
Q ss_pred CcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCE
Q 021196 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE 184 (316)
Q Consensus 105 L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~ 184 (316)
.+.+++++|.++. +|.. + .++|++|++++|.+++..|..|..+++|++|+|++|+++ .+|+..+..+++|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~----~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTG----I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSCCSS-CCSC----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCEEEeCCCCcCc-cCcc----C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCE
Confidence 4667777777654 3321 2 266777777777777666666777777777777777766 344435566777777
Q ss_pred EEcCCCcCCCccccccccCCCCCCEEEcCCcccc
Q 021196 185 LDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218 (316)
Q Consensus 185 L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~ 218 (316)
|+|++|++++. ++..+..+++|++|++++|.++
T Consensus 83 L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 83 LSLNDNQLKSI-PRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EECCSSCCCCC-CTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCccCEe-CHHHhcCCCCCCEEEeCCCCCC
Confidence 77777777663 3325666667777777776665
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=3.1e-13 Score=108.21 Aligned_cols=104 Identities=21% Similarity=0.307 Sum_probs=64.7
Q ss_pred cEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEE
Q 021196 106 ESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEEL 185 (316)
Q Consensus 106 ~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L 185 (316)
+.+++++|.+. .+|.. + .++|++|++++|.+++..|..|.++++|++|+|++|++++ +|+..+..+++|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~----~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAG----I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCS-SCCSC----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred cEEEeCCCCCC-ccCCC----c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEE
Confidence 56777777663 34432 2 2566777777777766666666667777777777776663 444345666667777
Q ss_pred EcCCCcCCCccccccccCCCCCCEEEcCCcccc
Q 021196 186 DMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218 (316)
Q Consensus 186 ~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~ 218 (316)
+|++|++++ +|+..+..+++|++|++++|.+.
T Consensus 87 ~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 87 DLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ECCSSCCCC-CCTTTTTTCTTCSEEECCSSCBC
T ss_pred ECCCCccce-eCHHHhccccCCCEEEeCCCCcc
Confidence 777766665 33324666666666666666665
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=4e-12 Score=112.92 Aligned_cols=91 Identities=22% Similarity=0.215 Sum_probs=77.0
Q ss_pred ccCCCCCcEEEccC-CccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCccccc
Q 021196 99 FTPFQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD 177 (316)
Q Consensus 99 ~~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~ 177 (316)
+..+++|++|+|++ |.+.+..+. .|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+|+..+.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~ 101 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQ 101 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTC
T ss_pred CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcc
Confidence 77888999999996 988876654 3889999999999999999888888999999999999999998 46664555
Q ss_pred CCCCCCEEEcCCCcCCCc
Q 021196 178 SLGNLEELDMSDNAINNL 195 (316)
Q Consensus 178 ~l~~L~~L~L~~n~~~~~ 195 (316)
.++ |+.|+|.+|.+...
T Consensus 102 ~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCC-CCEEECCSSCCCCC
T ss_pred cCC-ceEEEeeCCCccCC
Confidence 555 99999999998753
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.31 E-value=4.3e-11 Score=108.33 Aligned_cols=193 Identities=10% Similarity=0.122 Sum_probs=114.6
Q ss_pred ccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccc
Q 021196 97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL 176 (316)
Q Consensus 97 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l 176 (316)
..|..+++|+.++++.|.++..... .|. ..+|+.+.+..+ +...-...|.++++|+.+++..+ +. .++...|
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~----aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF 245 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPAS----TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAF 245 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTT----TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTT
T ss_pred HHhhCcccCCeeecCCCcceEechh----hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccc
Confidence 4455666666666666555432221 133 356666666533 44333445566666666666654 22 4555455
Q ss_pred cCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhcCCCCCCCEEECCCCCCCCccchhhhc
Q 021196 177 DSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELH 255 (316)
Q Consensus 177 ~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~ 255 (316)
.+ .+|+.+.+. +.++. ++..+|.++++|+.+.+.+|.+.......++ ..|..+++|+.+.+.+ .++ .++...|.
T Consensus 246 ~~-~~L~~i~lp-~~i~~-I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~ 320 (401)
T 4fdw_A 246 RE-SGITTVKLP-NGVTN-IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLG 320 (401)
T ss_dssp TT-CCCSEEEEE-TTCCE-ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTT
T ss_pred cc-CCccEEEeC-CCccE-EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhc
Confidence 55 566666663 33433 3444778888888888877765311111233 3677888888888874 465 67777788
Q ss_pred CCCCCCEEECCCCCCCcchhhhhhcCCCCCcEEEccCcccccccCC-Cccc
Q 021196 256 NFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKL 305 (316)
Q Consensus 256 ~l~~L~~L~L~~n~l~g~~ip~~l~~~~~L~~L~l~~N~l~g~ip~-~~~l 305 (316)
++++|+.+++..| ++. --+..|.++ +|+.+++++|.+....+. +..+
T Consensus 321 ~c~~L~~l~lp~~-l~~-I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 321 GNRKVTQLTIPAN-VTQ-INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp TCCSCCEEEECTT-CCE-ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred CCCCccEEEECcc-ccE-EcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 8888888888655 542 224567777 888888888876543333 4444
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=1.3e-11 Score=109.63 Aligned_cols=104 Identities=26% Similarity=0.370 Sum_probs=84.1
Q ss_pred cEEEccCC-ccCCccccccccccCCCCCCcEEECCC-CCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCC
Q 021196 106 ESLYLIGN-NIAGCVENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE 183 (316)
Q Consensus 106 ~~L~L~~n-~~~~~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~ 183 (316)
..++.+++ .+++ +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|. .|.++++|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-----l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~ 83 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-----LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD-AFHFTPRLS 83 (347)
T ss_dssp SCEECCSSCCCTT-TTT-----SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT-GGGSCSCCC
T ss_pred CEEEcCCCCCCCc-cCC-----CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH-HhcCCcCCC
Confidence 45688887 7765 553 77888999999996 999877778899999999999999999865554 788999999
Q ss_pred EEEcCCCcCCCccccccccCCCCCCEEEcCCcccc
Q 021196 184 ELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIA 218 (316)
Q Consensus 184 ~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~ 218 (316)
+|+|++|++++ +|+..+..++ |+.|++.+|.+.
T Consensus 84 ~L~l~~N~l~~-~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 84 RLNLSFNALES-LSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCSC-CCSTTTCSCC-CCEEECCSSCCC
T ss_pred EEeCCCCccce-eCHHHcccCC-ceEEEeeCCCcc
Confidence 99999999987 4553566555 999999999887
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.25 E-value=1.3e-10 Score=105.29 Aligned_cols=171 Identities=12% Similarity=0.141 Sum_probs=110.0
Q ss_pred ccCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCC
Q 021196 126 TLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLR 205 (316)
Q Consensus 126 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~ 205 (316)
.|.++++|+.+++.+|.++. ++...-.+.+|+.+.+..+ +. .++...|.++++|+.+++..+ ++. ++..+|.+ +
T Consensus 175 aF~~c~~L~~l~l~~n~l~~-I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~-I~~~aF~~-~ 248 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITK-LPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VST-IGQEAFRE-S 248 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSE-ECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCE-ECTTTTTT-C
T ss_pred HhhCcccCCeeecCCCcceE-echhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccC-cccccccc-C
Confidence 36667777777777666663 3332223566777777644 33 556666777777777777664 333 34445665 6
Q ss_pred CCCEEEcCCccccccccchh-hhhcCCCCCCCEEECCCCCCC----CccchhhhcCCCCCCEEECCCCCCCcchhhhhhc
Q 021196 206 KLNTLYLGGTEIAMIDGSKV-LQSIGSLPSLKTLYLSSTNFK----GTVVNQELHNFTNLEELILDDSDLHISQLLQSIA 280 (316)
Q Consensus 206 ~L~~L~l~~n~l~~~~~~~~-p~~~~~l~~L~~L~l~~n~l~----g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~~l~ 280 (316)
+|+.+.+. +.++ .+ ...|.++++|+.+++.+|.+. ..++...|..+++|+.+++.+ .++. --...|.
T Consensus 249 ~L~~i~lp-~~i~-----~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~-I~~~aF~ 320 (401)
T 4fdw_A 249 GITTVKLP-NGVT-----NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI-LGQGLLG 320 (401)
T ss_dssp CCSEEEEE-TTCC-----EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE-ECTTTTT
T ss_pred CccEEEeC-CCcc-----EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE-Ehhhhhc
Confidence 77777774 3343 33 246778888888888877653 136666788888899988884 4552 2235677
Q ss_pred CCCCCcEEEccCcccccccCC--Cccccchhhhhh
Q 021196 281 SFTSLKYLSMGFCTLTGALHG--QGKLRVSEAFMI 313 (316)
Q Consensus 281 ~~~~L~~L~l~~N~l~g~ip~--~~~l~~L~~l~i 313 (316)
++++|+.+.+..| ++ .|+. +.+| .|+.+.+
T Consensus 321 ~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l 352 (401)
T 4fdw_A 321 GNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKV 352 (401)
T ss_dssp TCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEE
T ss_pred CCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEE
Confidence 8888999998665 43 4444 7777 7777654
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.16 E-value=3e-11 Score=107.66 Aligned_cols=210 Identities=15% Similarity=0.100 Sum_probs=129.7
Q ss_pred CCcEEEEEcCCCCccccccc-cc--ccccccCCCCCcEEEccCCccCC----ccc-cccccccCCCCCCcEEECCCCCCC
Q 021196 73 TGRVIKLDLRDTRNWESAEW-YM--NASLFTPFQQLESLYLIGNNIAG----CVE-NEGLDTLSRLNNLKFLYLDYNHFN 144 (316)
Q Consensus 73 ~~~v~~l~L~~~~~~~~~~~-~~--~~~~~~~l~~L~~L~L~~n~~~~----~~~-~~~~~~l~~l~~L~~L~L~~n~l~ 144 (316)
..+|++|.+...+..+...+ .+ -......+++|+.|.+..+.... .+. ......+..+++|+.|++++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 45788998886653210000 00 01224567899999987654321 000 011123567899999999887311
Q ss_pred cccccccCCCCCCCEEEeeCcccccccCcccc--cCCCCCCEEEcCC--CcCCCc-----cccccc--cCCCCCCEEEcC
Q 021196 145 NSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL--DSLGNLEELDMSD--NAINNL-----VIPKDY--RGLRKLNTLYLG 213 (316)
Q Consensus 145 ~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l--~~l~~L~~L~L~~--n~~~~~-----~p~~~~--~~l~~L~~L~l~ 213 (316)
.++. + .+++|++|++..|.+...... .+ ..+++|+.|+|+. |...+. +.+ .+ ..+++|++|++.
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~-~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~ 260 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVE-DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIV 260 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHH-HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEE
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHH-HHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCC
Confidence 2333 3 378999999998887543221 33 3689999999863 222121 111 22 257899999999
Q ss_pred Cccccccccchhhhhc---CCCCCCCEEECCCCCCCCccch---hhhcCCCCCCEEECCCCCCCcchhhhhhcC-CCCCc
Q 021196 214 GTEIAMIDGSKVLQSI---GSLPSLKTLYLSSTNFKGTVVN---QELHNFTNLEELILDDSDLHISQLLQSIAS-FTSLK 286 (316)
Q Consensus 214 ~n~l~~~~~~~~p~~~---~~l~~L~~L~l~~n~l~g~~p~---~~~~~l~~L~~L~L~~n~l~g~~ip~~l~~-~~~L~ 286 (316)
+|.+. . ..+..+ ..+++|++|+++.|.+.+.-+. ..+..+++|+.|++++|.++. ..-..+.. + ..
T Consensus 261 ~~~i~-~---~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d-~~~~~l~~al--g~ 333 (362)
T 2ra8_A 261 DAEEQ-N---VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD-EMKKELQKSL--PM 333 (362)
T ss_dssp SCTTH-H---HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH-HHHHHHHHHC--CS
T ss_pred CCCCc-h---HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH-HHHHHHHHHc--CC
Confidence 99886 3 222222 4678899999999998764222 133457899999999999876 55555554 3 36
Q ss_pred EEEccCcc
Q 021196 287 YLSMGFCT 294 (316)
Q Consensus 287 ~L~l~~N~ 294 (316)
.++++.++
T Consensus 334 ~~~~~~~~ 341 (362)
T 2ra8_A 334 KIDVSDSQ 341 (362)
T ss_dssp EEECCSBC
T ss_pred EEEecCCc
Confidence 68888886
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.14 E-value=5.4e-11 Score=106.07 Aligned_cols=166 Identities=21% Similarity=0.281 Sum_probs=106.3
Q ss_pred cCCCCCCcEEECCCCCCC---------cccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccc
Q 021196 127 LSRLNNLKFLYLDYNHFN---------NSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVI 197 (316)
Q Consensus 127 l~~l~~L~~L~L~~n~l~---------~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p 197 (316)
+..+++|+.|.+...... +.+...+..+++|+.|++++|.-. .+++ + .+++|+.|+|..+.++....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCCChHHH
Confidence 456778888888665331 224444567789999999887311 3443 3 37889999998888765433
Q ss_pred ccccc--CCCCCCEEEcCC--ccccccc--cchhhhhc--CCCCCCCEEECCCCCCCCccchhhh--cCCCCCCEEECCC
Q 021196 198 PKDYR--GLRKLNTLYLGG--TEIAMID--GSKVLQSI--GSLPSLKTLYLSSTNFKGTVVNQEL--HNFTNLEELILDD 267 (316)
Q Consensus 198 ~~~~~--~l~~L~~L~l~~--n~l~~~~--~~~~p~~~--~~l~~L~~L~l~~n~l~g~~p~~~~--~~l~~L~~L~L~~ 267 (316)
. .+. .+++|++|+|+. |... +. ...+...+ ..+++|++|++.+|.+.+..+.... ..+++|++|+|+.
T Consensus 211 ~-~l~~~~lp~L~~L~L~~~~~~~~-~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 211 E-DILGSDLPNLEKLVLYVGVEDYG-FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp H-HHHHSBCTTCCEEEEECBCGGGT-CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred H-HHHHccCCCCcEEEEeccccccc-cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 3 333 678899988853 2221 11 11222233 3578899999988888754433111 3578899999999
Q ss_pred CCCCcc---hhhhhhcCCCCCcEEEccCcccccc
Q 021196 268 SDLHIS---QLLQSIASFTSLKYLSMGFCTLTGA 298 (316)
Q Consensus 268 n~l~g~---~ip~~l~~~~~L~~L~l~~N~l~g~ 298 (316)
|.+.+. .++..+..+++|+.|++++|.++..
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 988761 1344445678899999998887643
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.96 E-value=7.3e-10 Score=89.34 Aligned_cols=122 Identities=16% Similarity=0.149 Sum_probs=68.0
Q ss_pred cccCCCCCCEEEcCCC-cCCCcc---ccccccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccc
Q 021196 175 GLDSLGNLEELDMSDN-AINNLV---IPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVV 250 (316)
Q Consensus 175 ~l~~l~~L~~L~L~~n-~~~~~~---p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p 250 (316)
.+...++|++|+|++| .+.... ....+...++|++|+|++|.+.+.+...+...+...++|++|++++|.+.+.-.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444555555555555 544321 011344455666666666666532222344555555667777777777653210
Q ss_pred ---hhhhcCCCCCCEEEC--CCCCCCcc---hhhhhhcCCCCCcEEEccCcccc
Q 021196 251 ---NQELHNFTNLEELIL--DDSDLHIS---QLLQSIASFTSLKYLSMGFCTLT 296 (316)
Q Consensus 251 ---~~~~~~l~~L~~L~L--~~n~l~g~---~ip~~l~~~~~L~~L~l~~N~l~ 296 (316)
...+...+.|++|+| ++|.+..+ .+...+...++|++|+|++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 124555667777777 66777541 14455556677777777777764
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.92 E-value=7.4e-11 Score=100.27 Aligned_cols=86 Identities=24% Similarity=0.296 Sum_probs=52.8
Q ss_pred CCCCCCCEEEeeCccccc--ccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcccccccc----chh
Q 021196 152 GGLSSLRNLSLIGNRLIG--SIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDG----SKV 225 (316)
Q Consensus 152 ~~l~~L~~L~L~~n~l~g--~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~----~~~ 225 (316)
.++++|++|+|++|++++ .+|. .+..+++|+.|+|++|++++.-.-..+..+ +|++|++++|.++ +.. ...
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~-~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC-DTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG-GGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc-cccCcchhHH
Confidence 356777777777777765 3443 455677777777777777764111123333 7788888888776 410 012
Q ss_pred hhhcCCCCCCCEEEC
Q 021196 226 LQSIGSLPSLKTLYL 240 (316)
Q Consensus 226 p~~~~~l~~L~~L~l 240 (316)
...+..+++|+.||-
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 234667788887753
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.87 E-value=9.9e-10 Score=88.57 Aligned_cols=68 Identities=18% Similarity=0.087 Sum_probs=33.6
Q ss_pred CCCCCEEEcCCccccccccchhhhhcCCCCCCCEEEC--CCCCCCCccc---hhhhcCCCCCCEEECCCCCCC
Q 021196 204 LRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYL--SSTNFKGTVV---NQELHNFTNLEELILDDSDLH 271 (316)
Q Consensus 204 l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l--~~n~l~g~~p---~~~~~~l~~L~~L~L~~n~l~ 271 (316)
.++|++|++++|.+++.+...+...+...++|++|++ ++|.+..... .+.+...+.|++|++++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445555555555542222234445555555666666 5555543211 113344456666666666653
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.67 E-value=4.9e-09 Score=88.99 Aligned_cols=83 Identities=24% Similarity=0.286 Sum_probs=41.6
Q ss_pred CCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhh------
Q 021196 203 GLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL------ 276 (316)
Q Consensus 203 ~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip------ 276 (316)
++++|+.|+|++|.++ +- ..+|..+..+++|+.|+|++|++++.-....+..+ +|++|+|++|.+.+ .+|
T Consensus 168 ~l~~L~~L~Ls~N~l~-~l-~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~-~~~~~~~y~ 243 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLY-RL-DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD-TFRDQSTYI 243 (267)
T ss_dssp HCTTCCEEECTTSCCC-CC-GGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG-GCSSHHHHH
T ss_pred hCCCCCEEECCCCCCC-CC-ccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc-ccCcchhHH
Confidence 4556666666666665 10 02334444556666666666666532111122222 56666666666654 332
Q ss_pred -hhhcCCCCCcEEE
Q 021196 277 -QSIASFTSLKYLS 289 (316)
Q Consensus 277 -~~l~~~~~L~~L~ 289 (316)
..+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 2345556666554
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.56 E-value=1.1e-06 Score=79.17 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=64.4
Q ss_pred ccccCCCCCCEEEcCCccccccccchhh-hhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhhh
Q 021196 199 KDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLLQ 277 (316)
Q Consensus 199 ~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip~ 277 (316)
..+..+.+|+.+.+..+ ++ .|. .++.++.+|+.+++..+ ++ .|....|.++++|+.+++..+ ++. --..
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~-----~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~ 360 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VK-----FIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRK-IGAN 360 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CC-----EECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCE-ECTT
T ss_pred ccccccccccccccccc-cc-----eechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccE-ehHH
Confidence 35566677777777554 33 332 35677788888888644 54 566667788888888888766 442 2234
Q ss_pred hhcCCCCCcEEEccCcccccccC-CCccccchhhh
Q 021196 278 SIASFTSLKYLSMGFCTLTGALH-GQGKLRVSEAF 311 (316)
Q Consensus 278 ~l~~~~~L~~L~l~~N~l~g~ip-~~~~l~~L~~l 311 (316)
+|.++++|+.+++..+- + .+. .+.+|++|+.+
T Consensus 361 aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred HhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 67788888888887652 1 122 26777777653
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.48 E-value=3.2e-06 Score=76.10 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=14.0
Q ss_pred ccccccCCCCCcEEEccCC
Q 021196 95 NASLFTPFQQLESLYLIGN 113 (316)
Q Consensus 95 ~~~~~~~l~~L~~L~L~~n 113 (316)
...+|.++++|+.+.+..|
T Consensus 79 g~~AF~~C~~L~~i~~~~n 97 (394)
T 4gt6_A 79 GSNAFYNCTSLKRVTIQDN 97 (394)
T ss_dssp CTTTTTTCTTCCEEEEGGG
T ss_pred hHHHhhCCccCceEeecCC
Confidence 3456788888888887655
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.35 E-value=4.6e-06 Score=75.07 Aligned_cols=208 Identities=13% Similarity=0.149 Sum_probs=140.8
Q ss_pred cEEEEEcCCCCcccccccccccccccCCCCCcEEEccCCccCCccccccccccCCCCCCcEEECCCCCCCcccccccCCC
Q 021196 75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154 (316)
Q Consensus 75 ~v~~l~L~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 154 (316)
.++.+.+.++.. .+....|..+.+|+.+++..+ +. .++. ..+.++..|+.+.+..+.. .+.......
T Consensus 163 ~L~~i~l~~~~~------~I~~~~F~~c~~L~~i~l~~~-~~-~I~~---~~F~~~~~L~~i~~~~~~~--~i~~~~~~~ 229 (394)
T 4fs7_A 163 SLEYVSLPDSME------TLHNGLFSGCGKLKSIKLPRN-LK-IIRD---YCFAECILLENMEFPNSLY--YLGDFALSK 229 (394)
T ss_dssp TCCEEECCTTCC------EECTTTTTTCTTCCBCCCCTT-CC-EECT---TTTTTCTTCCBCCCCTTCC--EECTTTTTT
T ss_pred CCcEEecCCccc------eeccccccCCCCceEEEcCCC-ce-EeCc---hhhccccccceeecCCCce--Eeehhhccc
Confidence 355555554321 234556888899999998766 22 2222 3478888898888776543 233344456
Q ss_pred CCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhhhhcCCCCC
Q 021196 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPS 234 (316)
Q Consensus 155 ~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~ 234 (316)
.+|+.+.+.... . .+....+..+.+++.+.+..+... +....+..+..++.+....+.+. . ..+..+.+
T Consensus 230 ~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~~i~-~------~~F~~~~~ 298 (394)
T 4fs7_A 230 TGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSVIVP-E------KTFYGCSS 298 (394)
T ss_dssp CCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSSEEC-T------TTTTTCTT
T ss_pred CCCceEEECCCc-e-ecccccccccccceeEEcCCCcce--eeccccccccccceeccCceeec-c------cccccccc
Confidence 788888886543 2 455557788888999888776533 33447788888888887665443 1 25677888
Q ss_pred CCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchh-hhhhcCCCCCcEEEccCcccccccCC--Cccccchhhh
Q 021196 235 LKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL-LQSIASFTSLKYLSMGFCTLTGALHG--QGKLRVSEAF 311 (316)
Q Consensus 235 L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~i-p~~l~~~~~L~~L~l~~N~l~g~ip~--~~~l~~L~~l 311 (316)
|+.+.+..+ ++ .|+...|.++.+|+.+++.++ ++ .| ..+|.++++|+.+++..+ ++ .|+. +..|++|+.+
T Consensus 299 L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~--~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 299 LTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VE--EIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKV 371 (394)
T ss_dssp CCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CC--EECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEE
T ss_pred ccccccccc-cc-eechhhhcCCCCCCEEEeCCc-cc--EEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEE
Confidence 999888755 44 677667888999999998754 54 34 356888899999999776 43 4554 8888888876
Q ss_pred hh
Q 021196 312 MI 313 (316)
Q Consensus 312 ~i 313 (316)
.+
T Consensus 372 ~l 373 (394)
T 4fs7_A 372 EL 373 (394)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.31 E-value=2.1e-05 Score=70.65 Aligned_cols=124 Identities=12% Similarity=0.213 Sum_probs=73.9
Q ss_pred cccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhcCCCCCCCEEECCCCCCCCccchhh
Q 021196 175 GLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQE 253 (316)
Q Consensus 175 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~ 253 (316)
.|.++.+|+.+.+..+..+ +....+.+++.|+.+.+.. .++ .++ ..|.++.+|+.+.+..+ ++ .|....
T Consensus 260 aF~~c~~L~~i~lp~~~~~--I~~~aF~~c~~L~~i~l~~-~i~-----~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~a 329 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS--IGTGAFMNCPALQDIEFSS-RIT-----ELPESVFAGCISLKSIDIPEG-IT-QILDDA 329 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE--ECTTTTTTCTTCCEEECCT-TCC-----EECTTTTTTCTTCCEEECCTT-CC-EECTTT
T ss_pred eeeecccccEEecccccce--ecCcccccccccccccCCC-ccc-----ccCceeecCCCCcCEEEeCCc-cc-EehHhH
Confidence 4455666666666544322 3333666677777777753 333 333 35677788888888654 44 566667
Q ss_pred hcCCCCCCEEECCCCCCCcchh-hhhhcCCCCCcEEEccCcccccccCCCccccchhhhhh
Q 021196 254 LHNFTNLEELILDDSDLHISQL-LQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI 313 (316)
Q Consensus 254 ~~~l~~L~~L~L~~n~l~g~~i-p~~l~~~~~L~~L~l~~N~l~g~ip~~~~l~~L~~l~i 313 (316)
|.+|.+|+.+.+..+ ++ .| ...|.++++|+.+++.++... +..+..+..|+.+.+
T Consensus 330 F~~C~~L~~i~ip~s-v~--~I~~~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VT--KIPESAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPV 385 (394)
T ss_dssp TTTCTTCCEEEECTT-CC--BCCGGGGTTCTTCCEEEESSCHHH--HHTCBCCCCC-----
T ss_pred hhCCCCCCEEEECcc-cC--EEhHhHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEe
Confidence 788888888888654 43 23 356778888888888877543 223555666666543
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=7.2e-07 Score=70.51 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=14.8
Q ss_pred CCcEEEccCCccCCccccccccccCCCCCCcEEECCCC
Q 021196 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN 141 (316)
Q Consensus 104 ~L~~L~L~~n~~~~~~~~~~~~~l~~l~~L~~L~L~~n 141 (316)
+|++||++++.++.. +...+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~----GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI----GFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGG----GGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHH----HHHHhcCCCCCCEEEeCCC
Confidence 355555555543321 1122444444555554444
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=2.9e-06 Score=67.02 Aligned_cols=84 Identities=23% Similarity=0.334 Sum_probs=49.8
Q ss_pred CCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCcc-ccccccchhhhhcCCC----CCCCEEECCCCC-CCCccchhh
Q 021196 180 GNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTE-IAMIDGSKVLQSIGSL----PSLKTLYLSSTN-FKGTVVNQE 253 (316)
Q Consensus 180 ~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~-l~~~~~~~~p~~~~~l----~~L~~L~l~~n~-l~g~~p~~~ 253 (316)
.+|+.||++++.++..... .+..+++|++|+|++|. ++ . .-...++.+ ++|++|++++|. +++.--. .
T Consensus 61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~It-D---~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIE-D---GCLERLSQLENLQKSMLEMEIISCGNVTDKGII-A 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCC-H---HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-H
T ss_pred ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccC-H---HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-H
Confidence 3577777777776655444 55667777777777764 44 2 112233332 357777777663 5543332 4
Q ss_pred hcCCCCCCEEECCCCC
Q 021196 254 LHNFTNLEELILDDSD 269 (316)
Q Consensus 254 ~~~l~~L~~L~L~~n~ 269 (316)
+..+++|+.|+++++.
T Consensus 135 L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGGCTTCCEEEEESCT
T ss_pred HhcCCCCCEEECCCCC
Confidence 5566777777777664
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.00 E-value=1.1e-05 Score=65.01 Aligned_cols=96 Identities=17% Similarity=0.233 Sum_probs=48.8
Q ss_pred cccCCCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCCCCCccc---hhhhcCCCCCCEEECCCC---CCCc-
Q 021196 200 DYRGLRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTNFKGTVV---NQELHNFTNLEELILDDS---DLHI- 272 (316)
Q Consensus 200 ~~~~l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~l~g~~p---~~~~~~l~~L~~L~L~~n---~l~g- 272 (316)
.+..-+.|+.|+|++|.+.+.....+.+.+..-+.|++|+|+.|.|.+.-- .+.+..-+.|++|+|++| .+..
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 344445566666666655433333444555555566666666666653211 113344455666666543 2322
Q ss_pred --chhhhhhcCCCCCcEEEccCccc
Q 021196 273 --SQLLQSIASFTSLKYLSMGFCTL 295 (316)
Q Consensus 273 --~~ip~~l~~~~~L~~L~l~~N~l 295 (316)
..+.+.+..-+.|+.|+++.|..
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHhCCCcCeEeccCCCc
Confidence 02444555566677777766543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.95 E-value=0.00023 Score=63.43 Aligned_cols=129 Identities=12% Similarity=0.178 Sum_probs=77.5
Q ss_pred cCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCCCCEEEcCCccccccccchhh-hhc
Q 021196 151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRKLNTLYLGGTEIAMIDGSKVL-QSI 229 (316)
Q Consensus 151 ~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~p-~~~ 229 (316)
+..+.+|+.+.+..+- . .++...+.++..|+.+.+..+ ++. +....+.++.+|+.+.+..+ +. .++ ..+
T Consensus 213 f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~-v~~-I~~~aF~~~~~l~~i~l~~~-i~-----~i~~~aF 282 (379)
T 4h09_A 213 FSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN-VTS-IGSFLLQNCTALKTLNFYAK-VK-----TVPYLLC 282 (379)
T ss_dssp TTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT-CCE-ECTTTTTTCTTCCEEEECCC-CS-----EECTTTT
T ss_pred cccccccceeeeccce-e-EEccccccCCccceEEEcCCC-ccE-eCccccceeehhcccccccc-ce-----ecccccc
Confidence 3445566666664432 1 344445666777777777654 332 33336667777777777544 32 222 356
Q ss_pred CCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchhh-hhhcCCCCCcEEEccCc
Q 021196 230 GSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQLL-QSIASFTSLKYLSMGFC 293 (316)
Q Consensus 230 ~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~ip-~~l~~~~~L~~L~l~~N 293 (316)
..+++|+.+.+.++.++ .++...|.++.+|+.+.+..+ ++ .|. .+|.++++|+.+.+..+
T Consensus 283 ~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~--~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LK--TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-cc--EEHHHHhhCCCCCCEEEECCc
Confidence 67777777777776666 566667777777777777654 43 232 45667777777777544
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.93 E-value=0.00022 Score=63.47 Aligned_cols=142 Identities=16% Similarity=0.175 Sum_probs=103.0
Q ss_pred cCCCCCCcEEECCCCCCCcccccccCCCCCCCEEEeeCcccccccCcccccCCCCCCEEEcCCCcCCCccccccccCCCC
Q 021196 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKDYRGLRK 206 (316)
Q Consensus 127 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~l~~ 206 (316)
+....+|+.+.+..+ +.......+.++..|+.+.+..+ ++ .++...+.++.+|+.+.+..+ +.. ++...|.++++
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~-i~~~aF~~c~~ 287 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKT-VPYLLCSGCSN 287 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSE-ECTTTTTTCTT
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-cee-ccccccccccc
Confidence 455566777776544 33233445678899999999776 33 566668889999999998765 333 44558899999
Q ss_pred CCEEEcCCccccccccchhh-hhcCCCCCCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCCcchh-hhhhcCCC
Q 021196 207 LNTLYLGGTEIAMIDGSKVL-QSIGSLPSLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLHISQL-LQSIASFT 283 (316)
Q Consensus 207 L~~L~l~~n~l~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~i-p~~l~~~~ 283 (316)
|+.+.+..+.++ .++ ..|.++.+|+.+.+..+ ++ .|....|.++++|+.+.+..+ ++ .| ..+|.+++
T Consensus 288 L~~i~l~~~~i~-----~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~-v~--~I~~~aF~~c~ 356 (379)
T 4h09_A 288 LTKVVMDNSAIE-----TLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS-IT--LIESGAFEGSS 356 (379)
T ss_dssp CCEEEECCTTCC-----EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT-CC--EECTTTTTTSS
T ss_pred cccccccccccc-----eehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc-cC--EEchhHhhCCC
Confidence 999999988876 454 47889999999999755 55 677778999999999998765 43 23 23455554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.74 E-value=2.7e-05 Score=62.58 Aligned_cols=67 Identities=10% Similarity=0.044 Sum_probs=30.4
Q ss_pred CCCCCEEEcCCccccccccchhhhhcCCCCCCCEEECCCCC---CCCcc---chhhhcCCCCCCEEECCCCCC
Q 021196 204 LRKLNTLYLGGTEIAMIDGSKVLQSIGSLPSLKTLYLSSTN---FKGTV---VNQELHNFTNLEELILDDSDL 270 (316)
Q Consensus 204 l~~L~~L~l~~n~l~~~~~~~~p~~~~~l~~L~~L~l~~n~---l~g~~---p~~~~~~l~~L~~L~L~~n~l 270 (316)
-+.|++|+|++|.+.+.+...+.+.+..-+.|++|+|++|. +.... -.+.+..-+.|+.|+++.|.+
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 34455555555555422222344455555556666665432 21110 011334445566666655544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.93 E-value=0.0016 Score=48.65 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=12.7
Q ss_pred CCEEEeeCcccccccCcccccCCCCCCEEEcCCC
Q 021196 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190 (316)
Q Consensus 157 L~~L~L~~n~l~g~ip~~~l~~l~~L~~L~L~~n 190 (316)
|++|+|++|+++ .+|...|..+++|++|+|++|
T Consensus 33 l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLT-ALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCC-ccChhhhhhccccCEEEecCC
Confidence 333444444333 233333333344444444444
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.87 E-value=0.0017 Score=48.47 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=24.6
Q ss_pred CCCEEECCCCCCCCccchhhhcCCCCCCEEECCCCCCC
Q 021196 234 SLKTLYLSSTNFKGTVVNQELHNFTNLEELILDDSDLH 271 (316)
Q Consensus 234 ~L~~L~l~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~ 271 (316)
+|+.|+|++|+|+ .+|...|..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 4666777777666 566656666677777777777654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.23 E-value=63 Score=22.04 Aligned_cols=13 Identities=23% Similarity=0.215 Sum_probs=5.5
Q ss_pred cccCCCCCCEEEc
Q 021196 175 GLDSLGNLEELDM 187 (316)
Q Consensus 175 ~l~~l~~L~~L~L 187 (316)
.|.++.+|+.+.+
T Consensus 38 aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 38 MFSGCTALEKLIL 50 (100)
T ss_dssp SSTTCTTCCCEEE
T ss_pred HHhccCCccEEEE
Confidence 3444444444443
No 166
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=29.33 E-value=17 Score=16.89 Aligned_cols=11 Identities=27% Similarity=0.897 Sum_probs=7.7
Q ss_pred CCCCCcccceE
Q 021196 58 YSDCCQWERVE 68 (316)
Q Consensus 58 ~~~~c~w~gv~ 68 (316)
....|+|.|..
T Consensus 4 adgacswrgle 14 (23)
T 3ox7_P 4 ADGACSWRGLE 14 (26)
T ss_pred cCcccccccch
Confidence 34569998864
Done!