BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021197
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 120/252 (47%), Gaps = 52/252 (20%)
Query: 3 HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMKPILPAEL 62
+E + QF++++ L+ + KE + TL+RFL+AR ++++ + +M + E
Sbjct: 39 QEEALLQFRSIL--LEKNYKERLDD-------STLLRFLRARKFDINASVEM--FVETER 87
Query: 63 YRA----------------VRDSQLVGVSGY--------SKEGLPVIAV---GVGLS--- 92
+R D + + ++ K+G P+ G+ L
Sbjct: 88 WREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMY 147
Query: 93 --THDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIK 150
T +K + V+ + YR +P+ S++ G I TS VLD+ G+ LS N
Sbjct: 148 KITTEKQMLRNLVKEYELFATYR----VPACSRRAGYLIETSCTVLDLKGISLS--NAYH 201
Query: 151 LMTVITTIDDLN---YPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRD 207
+++ I + D++ YPE+ +YI+++P+ FS +K+VKP L T K+ +L + +
Sbjct: 202 VLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKK 261
Query: 208 ELLKIMDYASLP 219
ELLK + +LP
Sbjct: 262 ELLKQIPIENLP 273
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 120/252 (47%), Gaps = 52/252 (20%)
Query: 3 HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMKPILPAEL 62
+E + QF++++ L+ + KE + TL+RFL+AR ++++ + +M + E
Sbjct: 39 QEEALLQFRSIL--LEKNYKERLDD-------STLLRFLRARKFDINASVEM--FVETER 87
Query: 63 YRA----------------VRDSQLVGVSGY--------SKEGLPVIAV---GVGLS--- 92
+R D + + ++ K+G P+ G+ L
Sbjct: 88 WREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKKMY 147
Query: 93 --THDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIK 150
T +K + V+ + YR +P+ S++ G I TS VLD+ G+ LS N
Sbjct: 148 KITTEKQMLRNLVKEYELFATYR----VPACSRRAGYLIETSCTVLDLKGISLS--NAYH 201
Query: 151 LMTVITTIDDLN---YPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRD 207
+++ I + D++ YPE+ +YI+++P+ FS +K+VKP L T K+ +L + +
Sbjct: 202 VLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKK 261
Query: 208 ELLKIMDYASLP 219
ELLK + +LP
Sbjct: 262 ELLKQIPIENLP 273
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 113/253 (44%), Gaps = 58/253 (22%)
Query: 2 AHQEEIKQFQTLMED------LDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKM- 54
A ++ + + + L+ED LDDS TL+RFL+AR ++V A +M
Sbjct: 29 AQEKALAELRKLLEDAGFIERLDDS---------------TLLRFLRARKFDVQLAKEMF 73
Query: 55 -----------------------KPIL----PAELYRAVRDSQLVGVSGYSKEGLPVIAV 87
KP++ P ++ +D + V Y +E V
Sbjct: 74 ENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPV----YFEELGAVNLH 129
Query: 88 GVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLS-AL 146
+ T ++ + V + + +YR LP+ S+ G + TS ++D+ G+ +S A
Sbjct: 130 EMNKVTSEERMLKNLVWEYESVVQYR----LPACSRAAGHLVETSCTIMDLKGISISSAY 185
Query: 147 NQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGR 206
+ + + + I YPE+ +YI+NAP+ FS +++ KP L T K+ +L + +
Sbjct: 186 SVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQ 245
Query: 207 DELLKIMDYASLP 219
ELLK + +LP
Sbjct: 246 KELLKQIPAENLP 258
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 19/207 (9%)
Query: 32 NPTDT-LVRFLKARDWNVSKAHKM-------------KPILPAELYRAVRDSQLVGVSGY 77
NP D L+R+L+AR +++ K+ M I+ + ++ G+ GY
Sbjct: 32 NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGMCGY 91
Query: 78 SKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSAS---KKHGRYIGTSLK 134
+G PV +G + Q ++ ++L + K GR + T
Sbjct: 92 DLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITI 151
Query: 135 VLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQE 192
+ D GL L L + ++ + + NYPE + ++V AP +F + ++KP L E
Sbjct: 152 IYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSE 211
Query: 193 RTRRKMQVLQGNGRDELLKIMDYASLP 219
TR+K+ VL N ++ LLK + +P
Sbjct: 212 DTRKKIMVLGANWKEVLLKHISPDQVP 238
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 19/207 (9%)
Query: 32 NPTDT-LVRFLKARDWNVSKAHKM-------------KPILPAELYRAVRDSQLVGVSGY 77
NP D L+R+L+AR +++ K+ M I+ + ++ G+ GY
Sbjct: 32 NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGMCGY 91
Query: 78 SKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSAS---KKHGRYIGTSLK 134
+G PV +G + Q ++ ++L + K GR + T
Sbjct: 92 DLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITI 151
Query: 135 VLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQE 192
+ D GL L L + ++ + + NYPE + ++V AP +F + ++KP L E
Sbjct: 152 IYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSE 211
Query: 193 RTRRKMQVLQGNGRDELLKIMDYASLP 219
TR+K+ VL N ++ LLK + +P
Sbjct: 212 DTRKKIMVLGANWKEVLLKHISPDQVP 238
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 112/265 (42%), Gaps = 27/265 (10%)
Query: 32 NPTDT-LVRFLKARDWNVSKAHK-------------MKPILPAELYRAVRDSQLVGVSGY 77
NP D L+R+L+AR +++ K+ + I+ + ++ G GY
Sbjct: 32 NPDDYFLLRWLRARSFDLQKSEAXLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGXCGY 91
Query: 78 SKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSAS---KKHGRYIGTSLK 134
+G PV +G + Q ++ ++L + K GR + T
Sbjct: 92 DLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKXRECELLLQECAHQTTKLGRKVETITI 151
Query: 135 VLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQE 192
+ D GL L L + ++ + NYPE + ++V AP +F + ++KP L E
Sbjct: 152 IYDCEGLGLKHLWKPAVEAYGEFLCXFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSE 211
Query: 193 RTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSLDHAFHQRL 252
TR+K+ VL N ++ LLK + +P + G + GN ++ + ++
Sbjct: 212 DTRKKIXVLGANWKEVLLKHISPDQVP---VEYGGTXTDPDGNPKCKSKINYGGDIPRKY 268
Query: 253 Y--NYIKQQAVLTESVVPIRQGSFH 275
Y + +KQQ E V I +GS H
Sbjct: 269 YVRDQVKQQ---YEHSVQISRGSSH 290
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 135 VLDMTGLKLSALNQI------KLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKP 188
+ D+ G + S QI K+ V+T ++P K +++N P IF A + ++KP
Sbjct: 157 IFDLEGWQFSHAFQITPSVAKKIAAVLTD----SFPLKVRGIHLINEPVIFHAVFSMIKP 212
Query: 189 LLQERTRRKMQVLQGNGRDELLK 211
L E+ + ++ + N + LL+
Sbjct: 213 FLTEKIKERIHMHGNNYKQSLLQ 235
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 135 VLDMTGLKLSALNQI------KLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKP 188
+ D+ G + S QI K+ V+T ++P K +++N P IF A + +KP
Sbjct: 141 IFDLEGWQFSHAFQITPSVAKKIAAVLTD----SFPLKVRGIHLINEPVIFHAVFSXIKP 196
Query: 189 LLQERTRRKMQVLQGNGRDELLK 211
L E+ + ++ N + LL+
Sbjct: 197 FLTEKIKERIHXHGNNYKQSLLQ 219
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/172 (19%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 37 LVRFLKARDWNVSKAHKMK--------------PILPAELYRAVRDSQLVGV-SGYSKEG 81
+RF++AR +NV +A+++ L E R ++ GV S K G
Sbjct: 95 FLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYG 154
Query: 82 LPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGL 141
V+ + + + + +Q++ + E +++ ++ +G I + K M
Sbjct: 155 RVVMLFNIENWQSQEITFDEILQAYCFILE---KLLENEETQINGFCIIENFKGFTMQ-- 209
Query: 142 KLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQER 193
+ ++L L ++ + D ++P + + + ++ P+ F+ + VVKP L+ +
Sbjct: 210 QAASLRTSDLRKMVDMLQD-SFPARFKAIHFIHQPWYFTTTYNVVKPFLKSK 260
>pdb|2GB7|A Chain A, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
pdb|2GB7|B Chain B, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
pdb|2GB7|C Chain C, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
pdb|2GB7|D Chain D, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
pdb|2FQZ|A Chain A, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
pdb|2FQZ|B Chain B, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
pdb|2FQZ|C Chain C, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
pdb|2FQZ|D Chain D, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
Length = 305
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 154 VITTIDDLNYPEKTETYYIVN-APYIFSA---CWKVVKPLLQERTRRKMQVLQGNGR 206
V T DL Y +K Y++ N + YI + CWK +P +E T R + L R
Sbjct: 28 VYKTFCDLGYDQKNSDYFLNNPSEYIIAMRKNCWKEFEPFEKEFTTRMLSYLIDEER 84
>pdb|1WSR|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSR|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
Length = 375
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 158 IDDLNYPEKTE--TYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDY 215
+DDL +E Y + NA CW+ L+Q++ R LQ GRD L+++D
Sbjct: 99 LDDLIVTNTSEGHLYVVSNA-----GCWEKDLALMQDKVRE----LQNQGRDVGLEVLDN 149
Query: 216 ASL 218
A L
Sbjct: 150 ALL 152
>pdb|2C1W|A Chain A, The Structure Of Xendou: A Splicing Independent Snorna
Processing Endoribonuclease
pdb|2C1W|B Chain B, The Structure Of Xendou: A Splicing Independent Snorna
Processing Endoribonuclease
pdb|2C1W|C Chain C, The Structure Of Xendou: A Splicing Independent Snorna
Processing Endoribonuclease
Length = 292
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 12/68 (17%)
Query: 69 SQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRY 128
S +GVS + L I V L++ +K S + +++ EY ++V+ +HGRY
Sbjct: 228 SSFIGVSPEFEFALYTI---VFLASQEKMS-----REVVRLEEYELQIVV----NRHGRY 275
Query: 129 IGTSLKVL 136
IGT+ VL
Sbjct: 276 IGTAYPVL 283
>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Apo)
Length = 271
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 6 EIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKA 51
+ KQ L + ++ E +K QGN D +V+ LK RDW+ K+
Sbjct: 8 DFKQLNFLTKLNENHSGELWKGRWQGN--DIVVKVLKVRDWSTRKS 51
>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 271
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 6 EIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKA 51
+ KQ L + ++ E +K QGN D +V+ LK RDW+ K+
Sbjct: 8 DFKQLNFLTKLNENHSGELWKGRWQGN--DIVVKVLKVRDWSTRKS 51
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 105 SHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQI-----KLMTVITTID 159
SH++ ++ + ++ SKKH Y K +D + L L + I L TV ++
Sbjct: 2 SHMEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKME 61
Query: 160 DLNYPEKTETYYIVNAPYIFSACWKVVKP 188
+ +Y + E + + +FS C+K P
Sbjct: 62 NRDYRDAQE--FAADVRLMFSNCYKYNPP 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,504,202
Number of Sequences: 62578
Number of extensions: 397141
Number of successful extensions: 959
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 26
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)