Query 021197
Match_columns 316
No_of_seqs 248 out of 1403
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 14:10:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 100.0 7.6E-48 2.6E-52 370.0 16.7 262 3-281 12-297 (403)
2 3q8g_A CRAL-TRIO domain-contai 100.0 1.5E-44 5.3E-49 336.8 14.7 225 3-242 39-290 (320)
3 1aua_A Phosphatidylinositol tr 100.0 5.3E-44 1.8E-48 329.7 16.9 225 3-242 30-275 (296)
4 3hx3_A Retinaldehyde-binding p 100.0 2.4E-42 8.3E-47 321.6 18.2 216 4-232 59-294 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 3.9E-42 1.3E-46 311.4 15.7 209 3-230 8-233 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.3 9.2E-13 3.2E-17 118.4 6.6 139 65-219 6-145 (256)
7 3peg_A Neurofibromin; SEC14 do 99.2 3.2E-11 1.1E-15 110.0 7.2 136 66-217 26-162 (290)
8 3e21_A HFAF1, FAS-associated f 64.3 11 0.00038 23.7 4.3 35 3-53 5-40 (45)
9 1ify_A HHR23A, UV excision rep 50.4 18 0.00062 22.9 3.6 25 30-54 18-42 (49)
10 1wgl_A TOLL-interacting protei 49.0 11 0.00039 25.1 2.5 25 30-54 21-45 (59)
11 1vej_A Riken cDNA 4931431F19; 48.9 22 0.00076 24.8 4.1 24 31-54 40-64 (74)
12 2dah_A Ubiquilin-3; UBA domain 48.9 17 0.00057 23.7 3.3 24 31-54 20-44 (54)
13 1wji_A Tudor domain containing 48.3 15 0.00051 24.8 3.1 25 30-54 19-43 (63)
14 2g3q_A Protein YBL047C; endocy 48.1 14 0.00047 22.6 2.7 24 30-53 14-37 (43)
15 1v92_A NSFL1 cofactor P47; 3-h 46.5 19 0.00065 22.1 3.2 23 31-53 17-39 (46)
16 2jy5_A Ubiquilin-1; UBA, alter 45.4 20 0.00067 23.1 3.2 24 30-53 22-46 (52)
17 1wr1_B Ubiquitin-like protein 45.0 25 0.00084 23.3 3.7 23 31-53 28-51 (58)
18 1veg_A NEDD8 ultimate buster-1 44.8 29 0.00098 24.8 4.2 24 31-54 40-63 (83)
19 2bwb_A Ubiquitin-like protein 42.4 24 0.00083 22.1 3.2 23 31-53 18-41 (46)
20 2dal_A Protein KIAA0794; FAS a 41.8 26 0.0009 23.3 3.5 24 31-54 27-50 (62)
21 1wiv_A UBP14, ubiquitin-specif 41.5 34 0.0012 23.6 4.2 24 31-54 40-63 (73)
22 2di0_A Activating signal coint 39.5 29 0.001 24.0 3.5 25 30-54 25-49 (71)
23 2dna_A Unnamed protein product 39.1 34 0.0012 23.4 3.7 24 31-54 30-54 (67)
24 2dam_A ETEA protein; KIAA0887, 39.0 27 0.00092 23.8 3.3 23 32-54 32-54 (67)
25 2dak_A Ubiquitin carboxyl-term 36.6 44 0.0015 22.2 4.0 24 31-54 20-43 (63)
26 1z96_A DNA-damage, UBA-domain 35.4 26 0.00089 20.7 2.5 23 31-53 15-37 (40)
27 1vg5_A RSGI RUH-014, rhomboid 34.7 26 0.00089 24.4 2.6 25 30-54 39-63 (73)
28 2dhy_A CUE domain-containing p 33.9 28 0.00097 23.8 2.7 25 30-54 30-54 (67)
29 2knz_A Ubiquilin-4; cytoplasm, 33.6 30 0.001 22.2 2.7 25 30-54 21-46 (53)
30 2dzl_A Protein FAM100B; UBA-li 32.8 58 0.002 22.0 4.1 24 31-54 29-52 (66)
31 3sbx_A Putative uncharacterize 28.2 1E+02 0.0036 25.3 5.8 60 152-215 125-189 (189)
32 2dai_A Ubadc1, ubiquitin assoc 26.7 78 0.0027 22.4 4.1 24 31-54 40-63 (83)
33 2cwb_A Chimera of immunoglobul 24.8 39 0.0013 25.4 2.2 24 31-54 77-101 (108)
34 1otr_A Protein CUE2; protein-p 24.8 53 0.0018 20.9 2.5 25 30-54 16-40 (49)
35 1olm_A SEC14-like protein 2; l 23.8 28 0.00094 32.1 1.5 28 268-301 347-374 (403)
36 1j3a_A 50S ribosomal protein L 23.4 89 0.0031 24.6 4.2 45 134-208 2-46 (142)
37 3qua_A Putative uncharacterize 22.3 1.7E+02 0.0057 24.3 6.0 60 152-215 134-198 (199)
38 2oo3_A Protein involved in cat 22.2 30 0.001 30.7 1.4 31 163-193 233-263 (283)
39 1vq8_J 50S ribosomal protein L 22.0 99 0.0034 24.4 4.2 45 134-208 10-54 (145)
40 2k44_A Hsapbk, K+-channel volt 21.8 9 0.00031 21.3 -1.3 6 38-43 15-20 (28)
41 2dkl_A Trinucleotide repeat co 21.7 1.1E+02 0.0037 21.8 4.1 24 31-54 32-55 (85)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=7.6e-48 Score=370.00 Aligned_cols=262 Identities=24% Similarity=0.375 Sum_probs=220.5
Q ss_pred hHHHHHHHHHHHhhCchHHHHHHhhccCCCCHHHHHHHHhcCCCChHHHccC--------C-----CCCCHHHHHHHHcc
Q 021197 3 HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKM--------K-----PILPAELYRAVRDS 69 (316)
Q Consensus 3 ~~~~i~elr~~l~~~~~~l~~~~~~~~~~~~D~~LlRFLrar~fdv~kA~~m--------~-----~i~~~~~~~~l~~~ 69 (316)
.+++|+|||+++++....+ ...+|.+|+||||||+||+++|.+| + .+..+.....+++.
T Consensus 12 q~~~l~~lr~~l~~~~~~l--------~~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~ 83 (403)
T 1olm_A 12 QKEALAKFRENVQDVLPAL--------PNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQY 83 (403)
T ss_dssp HHHHHHHHHHHHGGGGGGS--------SCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCC--------CCCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHh
Confidence 4688999999998874322 3688999999999999999999999 1 12111111235556
Q ss_pred cceeecCCCCCCCcEEEEeecCCCCC----CcCHHHHHHHHHHHHHHHHhhcchhhhhhhCCCcccEEEEEeCCCCcccC
Q 021197 70 QLVGVSGYSKEGLPVIAVGVGLSTHD----KASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSA 145 (316)
Q Consensus 70 ~~~~~~G~Dk~GrPV~~~~~g~~~~~----~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~v~~~v~I~Dl~g~s~~~ 145 (316)
.+.+++|+|++||||+++++|.+|++ ..+.+++++++++++|...+. ++.++...|.+++++++|+||+|+++++
T Consensus 84 ~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~-~~~~s~~~g~~v~~~~~I~D~~g~sl~~ 162 (403)
T 1olm_A 84 LSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQE-CAHQTTKLGRKVETITIIYDCEGLGLKH 162 (403)
T ss_dssp CCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHH-HHHHHHHHTSCCCCEEEEEECTTCCGGG
T ss_pred CCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHH-HHhhHHhhCCcccceEEEEECCCCCHHH
Confidence 67889999999999999999999875 468899999999999998764 3445556678899999999999999999
Q ss_pred CCh--HHHHHHHHHhhhhcCccccccEEEEcCChhHHHHHHHhcccCCHhhhcceEEeCCCChhHHHhhCCCCCcccccc
Q 021197 146 LNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCR 223 (316)
Q Consensus 146 ~~~--~~~~~~~~~i~q~~YPe~l~~i~iVNaP~~f~~~~~lvkpfL~~~t~~Ki~~~~~~~~~~L~k~i~~~~LP~~yG 223 (316)
++. +++++.++.++|+||||+++++||||+|++|.++|+++||||+++|++||+|+++++.++|.++||+++||++|
T Consensus 163 ~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~LP~~y- 241 (403)
T 1olm_A 163 LWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEY- 241 (403)
T ss_dssp GCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBGGG-
T ss_pred HhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhCchhh-
Confidence 864 57889999999999999999999999999999999999999999999999999876788999999999999999
Q ss_pred cCCCCcccccCCCCCCCCCC---CCchhhhHHHHHHHHhhhh-c-cccccccCCceEEeccCC
Q 021197 224 KEGSGSSRHIGNGTTENCFS---LDHAFHQRLYNYIKQQAVL-T-ESVVPIRQGSFHVDFPEP 281 (316)
Q Consensus 224 g~~GG~~~~~~~~~~~~c~~---~~~~~~~~~y~~i~~~~~~-~-~~~~~~~~~s~~~~~~~~ 281 (316)
||++.+ +++++.|.+ +|+++|+++| ..++... . ++..+.++++++|.+++.
T Consensus 242 ---GG~~~~--~~~~~~c~~~i~~gg~vp~~~~--~~~~~~~~~~~~~~V~~g~~~~v~~~v~ 297 (403)
T 1olm_A 242 ---GGTMTD--PDGNPKCKSKINYGGDIPRKYY--VRDQVKQQYEHSVQISRGSSHQVEYEIL 297 (403)
T ss_dssp ---TSSBCC--TTCCTTCTTTCBCCCCCCGGGC--SCSSCCCCCSEEEEECTTCEEEEEEEEC
T ss_pred ---CCCcCC--CCCCcccccccccCCCCCcccc--cCCCcccccceEEEEcCCCEEEEEEEEc
Confidence 899887 899999986 4889999999 5544221 1 247888999999998886
No 2
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=1.5e-44 Score=336.79 Aligned_cols=225 Identities=25% Similarity=0.415 Sum_probs=192.2
Q ss_pred hHHHHHHHHHHHhhCchHHHHHHhhccCCCCHHHHHHHHhcCCCChHHHccC-------------CCCCCH-H-------
Q 021197 3 HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKM-------------KPILPA-E------- 61 (316)
Q Consensus 3 ~~~~i~elr~~l~~~~~~l~~~~~~~~~~~~D~~LlRFLrar~fdv~kA~~m-------------~~i~~~-~------- 61 (316)
.+++|+|||+++++.+. ....||.+|+||||||+||+++|.+| +.+.+. +
T Consensus 39 q~~~l~~lR~~l~~~~~---------~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~ 109 (320)
T 3q8g_A 39 QEEALLQFRSILLEKNY---------KERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAED 109 (320)
T ss_dssp HHHHHHHHHHHHHHTTC---------CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHhcCC---------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccch
Confidence 46899999999998752 24788999999999999999999999 122211 1
Q ss_pred -HHHHHHcccceeecCCCCCCCcEEEEeecCCCCCC----cCHHHHHHHHHHHHHHHHhhcchhhhhhhCCCcccEEEEE
Q 021197 62 -LYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDK----ASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVL 136 (316)
Q Consensus 62 -~~~~l~~~~~~~~~G~Dk~GrPV~~~~~g~~~~~~----~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~v~~~v~I~ 136 (316)
....+.++++.+++|+|++||||+|+++|.+|+++ .+.++++++.++.+|...+..++.+++..|..++++++|+
T Consensus 110 ~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~Ii 189 (320)
T 3q8g_A 110 KERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVL 189 (320)
T ss_dssp HHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEE
T ss_pred hHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEE
Confidence 11245677889999999999999999999998754 3678899999999998776556666777788899999999
Q ss_pred eCCCCcccCCCh-HHHHHHHHHhhhhcCccccccEEEEcCChhHHHHHHHhcccCCHhhhcceEEeCCCChhHHHhhCCC
Q 021197 137 DMTGLKLSALNQ-IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDY 215 (316)
Q Consensus 137 Dl~g~s~~~~~~-~~~~~~~~~i~q~~YPe~l~~i~iVNaP~~f~~~~~lvkpfL~~~t~~Ki~~~~~~~~~~L~k~i~~ 215 (316)
||+|+++++++. +++++.++.++|++||||++++||||+|++|.++|+++||||+++|++||+|+++++.++|.++||+
T Consensus 190 D~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~ 269 (320)
T 3q8g_A 190 DLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPI 269 (320)
T ss_dssp ECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCG
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCCh
Confidence 999999999865 5788999999999999999999999999999999999999999999999999987778999999999
Q ss_pred CCcccccccCCCCcccccCCCCCCCCC
Q 021197 216 ASLPHFCRKEGSGSSRHIGNGTTENCF 242 (316)
Q Consensus 216 ~~LP~~yGg~~GG~~~~~~~~~~~~c~ 242 (316)
++||++| ||++.+ ++.+..|.
T Consensus 270 ~~LP~~y----GG~~~~--~~~~ggc~ 290 (320)
T 3q8g_A 270 ENLPVKY----GGTSVL--HNPNDKFY 290 (320)
T ss_dssp GGSBGGG----TSCBCC--SSTTSCGG
T ss_pred hhCChhh----CCCCCC--CCCCCCee
Confidence 9999999 888877 34445675
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=5.3e-44 Score=329.75 Aligned_cols=225 Identities=24% Similarity=0.375 Sum_probs=190.1
Q ss_pred hHHHHHHHHHHHhhCchHHHHHHhhccCCCCHHHHHHHHhcCCCChHHHccC-C-------CCCCHHH--------HHHH
Q 021197 3 HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKM-K-------PILPAEL--------YRAV 66 (316)
Q Consensus 3 ~~~~i~elr~~l~~~~~~l~~~~~~~~~~~~D~~LlRFLrar~fdv~kA~~m-~-------~i~~~~~--------~~~l 66 (316)
.+++|+|||+++++.+. +...||.+|+||||||+||+++|.+| + ..-..++ ...+
T Consensus 30 q~~~l~~lr~~l~~~~~---------~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~ 100 (296)
T 1aua_A 30 QEKALAELRKLLEDAGF---------IERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLI 100 (296)
T ss_dssp HHHHHHHHHHHHHHTTC---------CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHH
T ss_pred HHHHHHHHHHHHHhcCC---------CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHH
Confidence 47899999999987641 35788999999999999999999999 1 1101111 1345
Q ss_pred HcccceeecCCCCCCCcEEEEeecCCCCCC----cCHHHHHHHHHHHHHHHHhhcchhhhhhhCCCcccEEEEEeCCCCc
Q 021197 67 RDSQLVGVSGYSKEGLPVIAVGVGLSTHDK----ASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLK 142 (316)
Q Consensus 67 ~~~~~~~~~G~Dk~GrPV~~~~~g~~~~~~----~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~v~~~v~I~Dl~g~s 142 (316)
.+.++.+++|+|++||||+|+++|.+|++. .+.+++++++++.+|...+..++.++...|.+++++++|+||+|++
T Consensus 101 ~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s 180 (296)
T 1aua_A 101 AKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGIS 180 (296)
T ss_dssp GGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCC
T ss_pred HHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCC
Confidence 566778899999999999999999988643 5788999999999998776656666667788899999999999999
Q ss_pred ccCCCh-HHHHHHHHHhhhhcCccccccEEEEcCChhHHHHHHHhcccCCHhhhcceEEeCCCChhHHHhhCCCCCcccc
Q 021197 143 LSALNQ-IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHF 221 (316)
Q Consensus 143 ~~~~~~-~~~~~~~~~i~q~~YPe~l~~i~iVNaP~~f~~~~~lvkpfL~~~t~~Ki~~~~~~~~~~L~k~i~~~~LP~~ 221 (316)
+++++. +++++.++.++|+|||||++++||||+|++|.++|+++||||+++|++||+|+++++.++|.++||+++||++
T Consensus 181 ~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~ 260 (296)
T 1aua_A 181 ISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVK 260 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCcHH
Confidence 998865 4788999999999999999999999999999999999999999999999999987788999999999999999
Q ss_pred cccCCCCcccccCCCCCCCCC
Q 021197 222 CRKEGSGSSRHIGNGTTENCF 242 (316)
Q Consensus 222 yGg~~GG~~~~~~~~~~~~c~ 242 (316)
| ||++.+ ++.+..|.
T Consensus 261 y----GG~~~~--~~~~~g~~ 275 (296)
T 1aua_A 261 F----GGKSEV--DESKGGLY 275 (296)
T ss_dssp G----TSCBCC--CGGGCCST
T ss_pred h----CCCCCC--CCCCCCce
Confidence 9 888876 33233565
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=2.4e-42 Score=321.61 Aligned_cols=216 Identities=16% Similarity=0.245 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHhhCchH---HHHHHhhccCCCCHHHHHHHHhcCCCChHHHccC---------------CCCCCHHHHHH
Q 021197 4 QEEIKQFQTLMEDLDDS---LKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKM---------------KPILPAELYRA 65 (316)
Q Consensus 4 ~~~i~elr~~l~~~~~~---l~~~~~~~~~~~~D~~LlRFLrar~fdv~kA~~m---------------~~i~~~~~~~~ 65 (316)
+++|++||+||++.++. |....+......||.+|+||||||+||+++|.+| +++.++++...
T Consensus 59 ~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~~~i~~~ 138 (316)
T 3hx3_A 59 EEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCT 138 (316)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCHHHHHHH
Confidence 57888999999887642 2211111125789999999999999999999998 12334444445
Q ss_pred HHcccceeecCCCCCCCcEEEEeecCCCCCCcCHHHHHHHHHHHHHHHHhhcchhhhhhhCCCcccEEEEEeCCCCcccC
Q 021197 66 VRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSA 145 (316)
Q Consensus 66 l~~~~~~~~~G~Dk~GrPV~~~~~g~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~v~~~v~I~Dl~g~s~~~ 145 (316)
++.+.+.+++|+|++||||+++++|.+++++.+.+++++++++++|.... ..+.+++|+++|+|++|++++|
T Consensus 139 l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~--------~~~~~v~g~v~IiD~~g~sl~~ 210 (316)
T 3hx3_A 139 IEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLE--------NEETQINGFCIIENFKGFTMQQ 210 (316)
T ss_dssp HHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTT--------SHHHHHHCEEEEEECTTCCHHH
T ss_pred HHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHh--------cccCCcceEEEEEECCCCCHHH
Confidence 66667788999999999999999999999988999999999999997632 1234678999999999999998
Q ss_pred CCh--HHHHHHHHHhhhhcCccccccEEEEcCChhHHHHHHHhcccCCHhhhcceEEeCCCChhHHHhhCCCCCcccccc
Q 021197 146 LNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCR 223 (316)
Q Consensus 146 ~~~--~~~~~~~~~i~q~~YPe~l~~i~iVNaP~~f~~~~~lvkpfL~~~t~~Ki~~~~~~~~~~L~k~i~~~~LP~~yG 223 (316)
++. ++.++.++.++|++||++++++||||+|++|.++|+++||||+++|++||+|++++ .++|.++||+++||++|
T Consensus 211 ~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~-~~~L~~~I~~~~LP~ey- 288 (316)
T 3hx3_A 211 AASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDD-LSGFYQEIDENILPSDF- 288 (316)
T ss_dssp HHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETC-CHHHHHHSCGGGSBGGG-
T ss_pred hccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCC-HHHHHhhCCHhhCcHhh-
Confidence 742 57899999999999999999999999999999999999999999999999998654 47999999999999999
Q ss_pred cCCCCcccc
Q 021197 224 KEGSGSSRH 232 (316)
Q Consensus 224 g~~GG~~~~ 232 (316)
||++.+
T Consensus 289 ---GG~~~~ 294 (316)
T 3hx3_A 289 ---GGTLPK 294 (316)
T ss_dssp ---TSSBCC
T ss_pred ---CCCCCC
Confidence 787753
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=3.9e-42 Score=311.40 Aligned_cols=209 Identities=17% Similarity=0.234 Sum_probs=175.5
Q ss_pred hHHHHHHHHHHHhhCchHHHHHHhhccCCCCHHHHHHHHhcCCCChHHHccC---------------CCCCCHHHHHHHH
Q 021197 3 HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKM---------------KPILPAELYRAVR 67 (316)
Q Consensus 3 ~~~~i~elr~~l~~~~~~l~~~~~~~~~~~~D~~LlRFLrar~fdv~kA~~m---------------~~i~~~~~~~~l~ 67 (316)
.+++|+|||+++++.+.. ..+...+|.+|+||||||+||+++|.+| .++.+.++...++
T Consensus 8 ~~~~l~~lr~~l~~~~~~------~~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~~ 81 (262)
T 1r5l_A 8 LQPGLAALRRRAREAGVP------LAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLK 81 (262)
T ss_dssp -CTTHHHHHHHHHHHTCC------CSSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHHH
T ss_pred HHHHHHHHHHHHHhCCcc------cCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHHH
Confidence 467899999999876431 0135789999999999999999999998 1233334444455
Q ss_pred cccceeecCCCCCCCcEEEEeecCCCCCCcCHHHHHHHHHHHHHHHHhhcchhhhhhhCCCcccEEEEEeCCCCcccCCC
Q 021197 68 DSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALN 147 (316)
Q Consensus 68 ~~~~~~~~G~Dk~GrPV~~~~~g~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~v~~~v~I~Dl~g~s~~~~~ 147 (316)
.+...+++|+|++||||+++++|.++++..+..+++++.++++|..... ...+++|+++|+|++|+++++++
T Consensus 82 ~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~~--------~~~~~~g~~~I~D~~g~s~~~~~ 153 (262)
T 1r5l_A 82 AGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQE--------VETQRNGIKAIFDLEGWQFSHAF 153 (262)
T ss_dssp TTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEEEECTTCCHHHHH
T ss_pred cCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHhC--------hhhcccceEEEEECCCCCHHHHh
Confidence 5556788999999999999999999998888889999999999975321 11245789999999999999875
Q ss_pred h--HHHHHHHHHhhhhcCccccccEEEEcCChhHHHHHHHhcccCCHhhhcceEEeCCCChhHHHhhCCCCCcccccccC
Q 021197 148 Q--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKE 225 (316)
Q Consensus 148 ~--~~~~~~~~~i~q~~YPe~l~~i~iVNaP~~f~~~~~lvkpfL~~~t~~Ki~~~~~~~~~~L~k~i~~~~LP~~yGg~ 225 (316)
. +++++.++.++|+||||+++++||||+|++|.++|+++||||+++|++||+|+++++.++|.++|| ++||++|
T Consensus 154 ~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~y--- 229 (262)
T 1r5l_A 154 QITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEY--- 229 (262)
T ss_dssp HCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGGG---
T ss_pred ccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHhh---
Confidence 3 578999999999999999999999999999999999999999999999999998777899999999 9999999
Q ss_pred CCCcc
Q 021197 226 GSGSS 230 (316)
Q Consensus 226 ~GG~~ 230 (316)
||++
T Consensus 230 -GG~~ 233 (262)
T 1r5l_A 230 -GGEE 233 (262)
T ss_dssp -TCSS
T ss_pred -CCCC
Confidence 5654
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.34 E-value=9.2e-13 Score=118.36 Aligned_cols=139 Identities=12% Similarity=0.036 Sum_probs=114.2
Q ss_pred HHHcccceeecCCCCCCCcEEEEeecCCCCCCcCHHHHHHHHHHHHHHHHhhcchhhhhhhCCCcccEEEEEeCCCCccc
Q 021197 65 AVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLS 144 (316)
Q Consensus 65 ~l~~~~~~~~~G~Dk~GrPV~~~~~g~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~v~~~v~I~Dl~g~s~~ 144 (316)
++.....++-.|.|++||||+++.+++++....+.+.++.+.+..++.. . -..+.+|+|++|++..
T Consensus 6 ~i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~-----------~---~~~y~lV~d~T~~~~~ 71 (256)
T 3pg7_A 6 ALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPY-----------Y---AKPYEIVVDLTHTGPS 71 (256)
T ss_dssp THHHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTT-----------T---TSCEEEEEECTTCCGG
T ss_pred HHHHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHh-----------c---CCCeEEEEECCCCCcc
Confidence 4555567777899999999999999999887777777777666544321 1 1468999999999998
Q ss_pred CCChHHHHHHHHHhhhhcCccccccEEEEcCChhHHHHHHHh-cccCCHhhhcceEEeCCCChhHHHhhCCCCCcc
Q 021197 145 ALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV-KPLLQERTRRKMQVLQGNGRDELLKIMDYASLP 219 (316)
Q Consensus 145 ~~~~~~~~~~~~~i~q~~YPe~l~~i~iVNaP~~f~~~~~lv-kpfL~~~t~~Ki~~~~~~~~~~L~k~i~~~~LP 219 (316)
+.+..++++.+.+++...|...++++||+|+++||...|+.+ ++|.+.+..+|+++++ ..++|.++|+.++|.
T Consensus 72 n~p~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~--sl~eL~~~i~~~~L~ 145 (256)
T 3pg7_A 72 NRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFID--CPGKLAEHIEHEQQK 145 (256)
T ss_dssp GCCCHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEES--STTGGGGTSCGGGCC
T ss_pred cCCcHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEEC--CHHHHHhhcCHHHcC
Confidence 877788999999999999999999999999999999776654 5667668889999997 478999999877663
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.17 E-value=3.2e-11 Score=110.02 Aligned_cols=136 Identities=10% Similarity=0.021 Sum_probs=103.1
Q ss_pred HHcccceeecCCCCCCCcEEEEeecCCCCCCcCHHHHHHHHHHHHHHHHhhcchhhhhhhCCCcccEEEEEeCCCCcccC
Q 021197 66 VRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSA 145 (316)
Q Consensus 66 l~~~~~~~~~G~Dk~GrPV~~~~~g~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~v~~~v~I~Dl~g~s~~~ 145 (316)
+.....++-.|.|++|+||+++.+++++....+.+.++.+.+..++.. . -..+.+|+|+++++..+
T Consensus 26 i~~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~-----------~---~~~y~lV~D~T~~~~~n 91 (290)
T 3peg_A 26 LKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPY-----------Y---AKPYEIVVDLTHTGPSN 91 (290)
T ss_dssp GGGTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTT-----------T---TSCEEEEEECTTCCGGG
T ss_pred hhcCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHh-----------c---CCCeEEEEEcCCCCccC
Confidence 334556666789999999999999999887777777777665543321 1 14689999999999987
Q ss_pred CChHHHHHHHHHhhhhcCccccccEEEEcCChhHHHHH-HHhcccCCHhhhcceEEeCCCChhHHHhhCCCCC
Q 021197 146 LNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACW-KVVKPLLQERTRRKMQVLQGNGRDELLKIMDYAS 217 (316)
Q Consensus 146 ~~~~~~~~~~~~i~q~~YPe~l~~i~iVNaP~~f~~~~-~lvkpfL~~~t~~Ki~~~~~~~~~~L~k~i~~~~ 217 (316)
-+..++++.+..++...|+..++++||+|+|++|...+ ...++|.+.+..+|+.++.. ...|..++++++
T Consensus 92 ~p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~--~~~L~~~i~~~~ 162 (290)
T 3peg_A 92 RFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQ 162 (290)
T ss_dssp CCCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS--SCC---------
T ss_pred CChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC--HHHHHhhCCHHH
Confidence 77688999999999999999999999999999999855 57788888889999998763 345999998774
No 8
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=64.31 E-value=11 Score=23.70 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhhCchHHHHHHhhccCCCCH-HHHHHHHhcCCCChHHHcc
Q 021197 3 HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPT-DTLVRFLKARDWNVSKAHK 53 (316)
Q Consensus 3 ~~~~i~elr~~l~~~~~~l~~~~~~~~~~~~D-~~LlRFLrar~fdv~kA~~ 53 (316)
.++.|.+|.++-. .+| ..-..||.+.+||++.|..
T Consensus 5 ~de~ia~F~~iTG----------------~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 5 REMILADFQACTG----------------IENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp HHHHHHHHHHHHC----------------CCCHHHHHHHHHHTTTCHHHHHT
T ss_pred HHHHHHHHHHHHC----------------CCCHHHHHHHHHHcCCcHHHHHH
Confidence 4566666666543 333 4677899999999999975
No 9
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=50.38 E-value=18 Score=22.91 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHhcCCCChHHHccC
Q 021197 30 QGNPTDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 30 ~~~~D~~LlRFLrar~fdv~kA~~m 54 (316)
-+++..-..+-|+++++|++.|.+.
T Consensus 18 MGF~~~~a~~AL~~~~~n~e~A~e~ 42 (49)
T 1ify_A 18 MGYERERVVAALRASYNNPHRAVEY 42 (49)
T ss_dssp TTCCHHHHHHHHHTTTSCSHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 3788889999999999999999753
No 10
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=49.03 E-value=11 Score=25.09 Aligned_cols=25 Identities=16% Similarity=0.100 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHhcCCCChHHHccC
Q 021197 30 QGNPTDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 30 ~~~~D~~LlRFLrar~fdv~kA~~m 54 (316)
+..+...+-.-|++++.|++.|..+
T Consensus 21 P~ld~~~I~~vL~a~~gdvd~aI~~ 45 (59)
T 1wgl_A 21 PNMDQEVIRSVLEAQRGNKDAAINS 45 (59)
T ss_dssp SSSCHHHHHHHHTTTTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 6888889999999999999999875
No 11
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=48.93 E-value=22 Score=24.82 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.1
Q ss_pred CC-CHHHHHHHHhcCCCChHHHccC
Q 021197 31 GN-PTDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 31 ~~-~D~~LlRFLrar~fdv~kA~~m 54 (316)
++ ++.-.++-|++.++|++.|.+.
T Consensus 40 GF~dr~~~~~AL~~t~Gnve~Ave~ 64 (74)
T 1vej_A 40 GFANRDANLQALVATDGDIHAAIEM 64 (74)
T ss_dssp TCCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCHHHHHHH
Confidence 55 5677799999999999999864
No 12
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=48.91 E-value=17 Score=23.72 Aligned_cols=24 Identities=21% Similarity=0.128 Sum_probs=19.4
Q ss_pred CCCH-HHHHHHHhcCCCChHHHccC
Q 021197 31 GNPT-DTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 31 ~~~D-~~LlRFLrar~fdv~kA~~m 54 (316)
+++| .--++-|++.++|++.|.+.
T Consensus 20 GF~d~~~n~~AL~~~~Gdv~~Ave~ 44 (54)
T 2dah_A 20 GFLNREANLQALIATGGDVDAAVEK 44 (54)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 6755 45699999999999999764
No 13
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=48.33 E-value=15 Score=24.80 Aligned_cols=25 Identities=16% Similarity=0.120 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHhcCCCChHHHccC
Q 021197 30 QGNPTDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 30 ~~~~D~~LlRFLrar~fdv~kA~~m 54 (316)
-+++..-..+-|+++++|++.|...
T Consensus 19 MGF~~~~a~~AL~~~~~nve~A~e~ 43 (63)
T 1wji_A 19 MGFSKEASRQALMDNGNNLEAALNV 43 (63)
T ss_dssp TTCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 3788888899999999999999875
No 14
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=48.12 E-value=14 Score=22.61 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHhcCCCChHHHcc
Q 021197 30 QGNPTDTLVRFLKARDWNVSKAHK 53 (316)
Q Consensus 30 ~~~~D~~LlRFLrar~fdv~kA~~ 53 (316)
-+++..-..+-|+++++|++.|..
T Consensus 14 MGF~~~~a~~AL~~~~~n~e~A~~ 37 (43)
T 2g3q_A 14 MGFTEEEAHNALEKCNWDLEAATN 37 (43)
T ss_dssp TTSCHHHHHHHHHHHTSCHHHHHH
T ss_pred cCCCHHHHHHHHHHhCcCHHHHHH
Confidence 378888888999999999999864
No 15
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=46.50 E-value=19 Score=22.13 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHhcCCCChHHHcc
Q 021197 31 GNPTDTLVRFLKARDWNVSKAHK 53 (316)
Q Consensus 31 ~~~D~~LlRFLrar~fdv~kA~~ 53 (316)
+.+...-..||.+.+||++.|..
T Consensus 17 g~~~~~A~~~L~~~~wdle~Ai~ 39 (46)
T 1v92_A 17 GAEEDRARFFLESAGWDLQIALA 39 (46)
T ss_dssp CCCHHHHHHHHHHTTSCSHHHHH
T ss_pred CcCHHHHHHHHHHcCCCHHHHHH
Confidence 45677889999999999999875
No 16
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=45.37 E-value=20 Score=23.08 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=20.7
Q ss_pred CCC-CHHHHHHHHhcCCCChHHHcc
Q 021197 30 QGN-PTDTLVRFLKARDWNVSKAHK 53 (316)
Q Consensus 30 ~~~-~D~~LlRFLrar~fdv~kA~~ 53 (316)
-++ ++.-..+-|++.++|++.|.+
T Consensus 22 MGF~~~~~~~~AL~~t~gn~e~A~e 46 (52)
T 2jy5_A 22 MGFLNREANLQALIATGGDINAAIE 46 (52)
T ss_dssp TTCCCHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 377 778889999999999999975
No 17
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=45.02 E-value=25 Score=23.30 Aligned_cols=23 Identities=26% Similarity=0.133 Sum_probs=19.2
Q ss_pred CC-CHHHHHHHHhcCCCChHHHcc
Q 021197 31 GN-PTDTLVRFLKARDWNVSKAHK 53 (316)
Q Consensus 31 ~~-~D~~LlRFLrar~fdv~kA~~ 53 (316)
++ ++.-.++-|++.++|++.|.+
T Consensus 28 GF~d~~~~~~AL~~~~gnve~Ave 51 (58)
T 1wr1_B 28 GFFDFDRNVAALRRSGGSVQGALD 51 (58)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCHHHHHH
Confidence 55 456779999999999999975
No 18
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=44.83 E-value=29 Score=24.85 Aligned_cols=24 Identities=25% Similarity=0.056 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHhcCCCChHHHccC
Q 021197 31 GNPTDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 31 ~~~D~~LlRFLrar~fdv~kA~~m 54 (316)
+++..-..+-|++.++|++.|.+.
T Consensus 40 GF~~~~A~~AL~~t~gdve~A~e~ 63 (83)
T 1veg_A 40 GFDTVVAEAALRVFGGNVQLAAQT 63 (83)
T ss_dssp SCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 788889999999999999999875
No 19
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=42.41 E-value=24 Score=22.05 Aligned_cols=23 Identities=26% Similarity=0.088 Sum_probs=19.0
Q ss_pred CCC-HHHHHHHHhcCCCChHHHcc
Q 021197 31 GNP-TDTLVRFLKARDWNVSKAHK 53 (316)
Q Consensus 31 ~~~-D~~LlRFLrar~fdv~kA~~ 53 (316)
++. +.-.++-|++.++|++.|.+
T Consensus 18 GF~d~~~~~~AL~~~~gnv~~Ave 41 (46)
T 2bwb_A 18 GFFDFDRNVAALRRSGGSVQGALD 41 (46)
T ss_dssp TCCCHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCHHHHHH
Confidence 654 56679999999999999975
No 20
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.83 E-value=26 Score=23.35 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHhcCCCChHHHccC
Q 021197 31 GNPTDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 31 ~~~D~~LlRFLrar~fdv~kA~~m 54 (316)
+.++..-..||.+.+||++.|...
T Consensus 27 g~~~~~A~~~Le~~~WnLe~Av~~ 50 (62)
T 2dal_A 27 GASESVGKHMLEACNNNLEMAVTM 50 (62)
T ss_dssp CCCHHHHHHHHHTTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 556778899999999999999765
No 21
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=41.53 E-value=34 Score=23.65 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHhcCCCChHHHccC
Q 021197 31 GNPTDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 31 ~~~D~~LlRFLrar~fdv~kA~~m 54 (316)
+++..-..+-||++++|++.|...
T Consensus 40 GF~~~~a~~AL~~t~~nve~Ave~ 63 (73)
T 1wiv_A 40 GFAEDVARKALKASGGDIEKATDW 63 (73)
T ss_dssp TCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHH
Confidence 778888889999999999999753
No 22
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=39.48 E-value=29 Score=24.03 Aligned_cols=25 Identities=4% Similarity=0.011 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHhcCCCChHHHccC
Q 021197 30 QGNPTDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 30 ~~~~D~~LlRFLrar~fdv~kA~~m 54 (316)
+++.+.++.+.|..++.|++.+...
T Consensus 25 PdLG~gfi~~~L~~y~~nvE~vin~ 49 (71)
T 2di0_A 25 PDLGEGFILACLEYYHYDPEQVINN 49 (71)
T ss_dssp CSSCHHHHHHHHHHTTTCHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHH
Confidence 6899999999999999999999876
No 23
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=39.10 E-value=34 Score=23.39 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=19.8
Q ss_pred CC-CHHHHHHHHhcCCCChHHHccC
Q 021197 31 GN-PTDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 31 ~~-~D~~LlRFLrar~fdv~kA~~m 54 (316)
++ ++..-+|-|++.+.|++.|.+.
T Consensus 30 GF~d~~an~~AL~at~Gnve~Ave~ 54 (67)
T 2dna_A 30 GFVNYNANLQALIATDGDTNAAIYK 54 (67)
T ss_dssp TCCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 54 4556699999999999999875
No 24
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.04 E-value=27 Score=23.76 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=19.0
Q ss_pred CCHHHHHHHHhcCCCChHHHccC
Q 021197 32 NPTDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 32 ~~D~~LlRFLrar~fdv~kA~~m 54 (316)
.+...-..||.+.+||++.|...
T Consensus 32 ~d~~~A~~~Le~~~WnLe~Av~~ 54 (67)
T 2dam_A 32 ESMDQCRHTLEQHNWNIEAAVQD 54 (67)
T ss_dssp SCHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHH
Confidence 34557888999999999999865
No 25
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.56 E-value=44 Score=22.20 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHhcCCCChHHHccC
Q 021197 31 GNPTDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 31 ~~~D~~LlRFLrar~fdv~kA~~m 54 (316)
+++..-..+-|+++++|++.|...
T Consensus 20 GF~~~~a~~AL~~t~~nve~A~e~ 43 (63)
T 2dak_A 20 GFSRDQALKALRATNNSLERAVDW 43 (63)
T ss_dssp TCCHHHHHHHHHHTTSCSHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 677778889999999999999865
No 26
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=35.43 E-value=26 Score=20.65 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHhcCCCChHHHcc
Q 021197 31 GNPTDTLVRFLKARDWNVSKAHK 53 (316)
Q Consensus 31 ~~~D~~LlRFLrar~fdv~kA~~ 53 (316)
+++..-..+.|+++++|++.|..
T Consensus 15 Gf~~~~a~~AL~~~~~n~e~A~~ 37 (40)
T 1z96_A 15 GFDPLEAAQALDAANGDLDVAAS 37 (40)
T ss_dssp TCCHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHH
Confidence 67777788999999999999864
No 27
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=34.70 E-value=26 Score=24.40 Aligned_cols=25 Identities=20% Similarity=0.136 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHhcCCCChHHHccC
Q 021197 30 QGNPTDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 30 ~~~~D~~LlRFLrar~fdv~kA~~m 54 (316)
-+++.....+-|+++++|++.|.+.
T Consensus 39 MGF~r~~a~~AL~~~~~nve~Ave~ 63 (73)
T 1vg5_A 39 MGFDRTQVEVALAAADDDLTVAVEI 63 (73)
T ss_dssp TTCCHHHHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 4788889999999999999999764
No 28
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.93 E-value=28 Score=23.78 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHhcCCCChHHHccC
Q 021197 30 QGNPTDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 30 ~~~~D~~LlRFLrar~fdv~kA~~m 54 (316)
+..+...+..-|+++++|++.|.+.
T Consensus 30 P~lD~~vI~~vL~a~~G~vd~aId~ 54 (67)
T 2dhy_A 30 PNMDYDIIECVLRANSGAVDATIDQ 54 (67)
T ss_dssp SSSCHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 6888889999999999999999754
No 29
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=33.59 E-value=30 Score=22.25 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=21.4
Q ss_pred CCC-CHHHHHHHHhcCCCChHHHccC
Q 021197 30 QGN-PTDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 30 ~~~-~D~~LlRFLrar~fdv~kA~~m 54 (316)
-++ ++.-..+-|+++++|++.|.+.
T Consensus 21 MGF~~~~~~~~AL~~t~gnve~Ave~ 46 (53)
T 2knz_A 21 MGFINREANLQALIATGGDINAAIER 46 (53)
T ss_dssp TTCCCHHHHHHHHHHHTSCHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 377 7888899999999999999753
No 30
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.80 E-value=58 Score=21.99 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHhcCCCChHHHccC
Q 021197 31 GNPTDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 31 ~~~D~~LlRFLrar~fdv~kA~~m 54 (316)
+.++..-..||.+.+||++.|...
T Consensus 29 g~~~~~A~~~Le~~~WdLe~Al~~ 52 (66)
T 2dzl_A 29 GCAADQAKQLLQAAHWQFETALST 52 (66)
T ss_dssp CCCHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 556668889999999999999875
No 31
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=28.23 E-value=1e+02 Score=25.34 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=42.2
Q ss_pred HHHHHHhhhhcCccccccEEEEcCChhHHHHHHHhc-----ccCCHhhhcceEEeCCCChhHHHhhCCC
Q 021197 152 MTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK-----PLLQERTRRKMQVLQGNGRDELLKIMDY 215 (316)
Q Consensus 152 ~~~~~~i~q~~YPe~l~~i~iVNaP~~f~~~~~lvk-----pfL~~~t~~Ki~~~~~~~~~~L~k~i~~ 215 (316)
+..++++.|-.+- -+-++++|..-++.-+..++. -|++++.++.+.+.. +.+++.+++.|
T Consensus 125 lfe~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d--~~ee~~~~l~~ 189 (189)
T 3sbx_A 125 LLDVWTEGYLGMH--DKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVD--NLDDALQACAP 189 (189)
T ss_dssp HHHHHHHHHTTSC--CCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEES--SHHHHHHHHCC
T ss_pred HHHHHHHHHhccc--CCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeC--CHHHHHHHhcC
Confidence 3344444454442 368999999767676665543 599999999999976 58888887764
No 32
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.74 E-value=78 Score=22.43 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHhcCCCChHHHccC
Q 021197 31 GNPTDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 31 ~~~D~~LlRFLrar~fdv~kA~~m 54 (316)
+++..-..+-|+++++|++.|...
T Consensus 40 GF~~~~a~~AL~~t~~nve~A~ew 63 (83)
T 2dai_A 40 GFPENRATKALQLNHMSVPQAMEW 63 (83)
T ss_dssp TCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHH
Confidence 788888899999999999999765
No 33
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=24.85 E-value=39 Score=25.42 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.2
Q ss_pred CCC-HHHHHHHHhcCCCChHHHccC
Q 021197 31 GNP-TDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 31 ~~~-D~~LlRFLrar~fdv~kA~~m 54 (316)
++. +.-.++-|++.++|++.|.+.
T Consensus 77 GF~d~~~ni~AL~~t~Gdve~AVe~ 101 (108)
T 2cwb_A 77 GIQDDELSLRALQATGGDIQAALEL 101 (108)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 664 578899999999999999764
No 34
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=24.77 E-value=53 Score=20.93 Aligned_cols=25 Identities=8% Similarity=0.033 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHhcCCCChHHHccC
Q 021197 30 QGNPTDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 30 ~~~~D~~LlRFLrar~fdv~kA~~m 54 (316)
+..+...+-+-|+++++|++.|..+
T Consensus 16 P~~~~~~ik~~L~~~~Gd~d~Ai~~ 40 (49)
T 1otr_A 16 PAISKSKLQVHLLENNNDLDLTIGL 40 (49)
T ss_dssp SSSCHHHHHHHHHHTTTCSHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5677778888899999999999765
No 35
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=23.80 E-value=28 Score=32.12 Aligned_cols=28 Identities=7% Similarity=0.182 Sum_probs=23.3
Q ss_pred cccCCceEEeccCCCCccceeeeeeccccccccc
Q 021197 268 PIRQGSFHVDFPEPDPEGAKITKKIESEFHRIGD 301 (316)
Q Consensus 268 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (316)
....|||.+. ++|+.+++.||++|.++.
T Consensus 347 ~~~~G~~~~~------~~G~y~l~fdNs~S~~~~ 374 (403)
T 1olm_A 347 VPEDGTLTCS------DPGIYVLRFDNTYSFIHA 374 (403)
T ss_dssp SCEEEEEECC------SCEEEEEEEECTTCCCCS
T ss_pred ccccCEEEcC------CCeEEEEEEeccccceec
Confidence 3457888887 999999999999998764
No 36
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=23.39 E-value=89 Score=24.58 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=29.7
Q ss_pred EEEeCCCCcccCCChHHHHHHHHHhhhhcCccccccEEEEcCChhHHHHHHHhcccCCHhhhcceEEeCCCChhH
Q 021197 134 KVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDE 208 (316)
Q Consensus 134 ~I~Dl~g~s~~~~~~~~~~~~~~~i~q~~YPe~l~~i~iVNaP~~f~~~~~lvkpfL~~~t~~Ki~~~~~~~~~~ 208 (316)
+|+|.+|-.+..+ ...+.+++. .=..++|||| +||.+.+.++...
T Consensus 2 ~viDA~g~~LGRL-----As~vAk~L~-----~Gd~VVViNa--------------------eki~iTG~k~~~K 46 (142)
T 1j3a_A 2 RIINADGLILGRL-----ASRVAKMLL-----EGEEVVIVNA--------------------EKAVITGNREVIF 46 (142)
T ss_dssp EEEECTTBBHHHH-----HHHHHHHHH-----TTCCEEEECG--------------------GGCEEESCHHHHH
T ss_pred EEEeCCCCchHHH-----HHHHHHHHh-----cCCEEEEEeC--------------------eeeEecccHHhhe
Confidence 5889988776543 333444443 4567999999 8999877544333
No 37
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=22.31 E-value=1.7e+02 Score=24.29 Aligned_cols=60 Identities=8% Similarity=0.068 Sum_probs=42.8
Q ss_pred HHHHHHhhhhcCccccccEEEEcCChhHHHHHHHhc-----ccCCHhhhcceEEeCCCChhHHHhhCCC
Q 021197 152 MTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK-----PLLQERTRRKMQVLQGNGRDELLKIMDY 215 (316)
Q Consensus 152 ~~~~~~i~q~~YPe~l~~i~iVNaP~~f~~~~~lvk-----pfL~~~t~~Ki~~~~~~~~~~L~k~i~~ 215 (316)
+..++++.|-.+. -+-++++|..-++.-++.++. -|++++.++.+.+.. +.+++.+++.+
T Consensus 134 l~e~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d--~~~e~~~~l~~ 198 (199)
T 3qua_A 134 FFEAWTAGYLGMH--DKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVVD--NVEAALEACAP 198 (199)
T ss_dssp HHHHHHHHHTTSC--CCCEEEECTTSTTHHHHHHHHHTTTTTSSCHHHHHTSEEES--SHHHHHHHHSC
T ss_pred HHHHHHHHHhccC--CCCEEEEcCCccchHHHHHHHHHHHCCCCCHHHCCeEEEeC--CHHHHHHHHhc
Confidence 4444555555542 357999998767777776653 488888999999976 58888887764
No 38
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=22.24 E-value=30 Score=30.65 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=24.4
Q ss_pred CccccccEEEEcCChhHHHHHHHhcccCCHh
Q 021197 163 YPEKTETYYIVNAPYIFSACWKVVKPLLQER 193 (316)
Q Consensus 163 YPe~l~~i~iVNaP~~f~~~~~lvkpfL~~~ 193 (316)
....=.-++|||+||-+....+-+-|+|.+.
T Consensus 233 ~gm~gsGm~viNpP~~l~~~~~~~l~~l~~~ 263 (283)
T 2oo3_A 233 EGMTGCGLWIINPPYTFPSEIKLVLETLTTY 263 (283)
T ss_dssp CSCCEEEEEEESCCTTHHHHHHHHHHHHHHH
T ss_pred CCcCceeEEEECCchhHHHHHHHHHHHHHHH
Confidence 3444567899999999999888888877764
No 39
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=22.00 E-value=99 Score=24.43 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=30.1
Q ss_pred EEEeCCCCcccCCChHHHHHHHHHhhhhcCccccccEEEEcCChhHHHHHHHhcccCCHhhhcceEEeCCCChhH
Q 021197 134 KVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDE 208 (316)
Q Consensus 134 ~I~Dl~g~s~~~~~~~~~~~~~~~i~q~~YPe~l~~i~iVNaP~~f~~~~~lvkpfL~~~t~~Ki~~~~~~~~~~ 208 (316)
+|+|.+|-.+..+ ...+.+++. .=..++|||| +||.+.+.++...
T Consensus 10 ~viDA~g~~LGRL-----As~vAk~L~-----~Gd~VVViNa--------------------eki~iTG~k~~~K 54 (145)
T 1vq8_J 10 VIVDARDCIMGRV-----ASQVAEQAL-----DGETVAVVNA--------------------ERAVITGREEQIV 54 (145)
T ss_dssp EEEECTTBBHHHH-----HHHHHHHHH-----TTCCEEEECG--------------------GGCEEESCHHHHH
T ss_pred EEEeCCCCchHHH-----HHHHHHHHh-----cCCEEEEEeC--------------------EeeEecchhhhhe
Confidence 5899988776543 333444443 4577999999 8999877544433
No 40
>2k44_A Hsapbk, K+-channel voltage-sensor paddle domain of calcium-activated potassium channel subunit...; membrane, micelle, solution structure; NMR {Synthetic}
Probab=21.83 E-value=9 Score=21.35 Aligned_cols=6 Identities=67% Similarity=1.254 Sum_probs=4.8
Q ss_pred HHHHhc
Q 021197 38 VRFLKA 43 (316)
Q Consensus 38 lRFLra 43 (316)
||||||
T Consensus 15 LRFLRA 20 (28)
T 2k44_A 15 LRFLRA 20 (28)
T ss_dssp STTCTT
T ss_pred HHHHHH
Confidence 788887
No 41
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.71 E-value=1.1e+02 Score=21.77 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHhcCCCChHHHccC
Q 021197 31 GNPTDTLVRFLKARDWNVSKAHKM 54 (316)
Q Consensus 31 ~~~D~~LlRFLrar~fdv~kA~~m 54 (316)
+++..-..+-|+++++|++.|...
T Consensus 32 GF~~~~a~~AL~~~n~n~e~A~ew 55 (85)
T 2dkl_A 32 GFPREPAEEALKSNNMNLDQAMSA 55 (85)
T ss_dssp TCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 778888888899999999999865
Done!