Query 021198
Match_columns 316
No_of_seqs 152 out of 799
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 08:22:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02859 AMPKbeta_GBD_like AMP- 99.9 1.3E-24 2.7E-29 168.7 9.8 78 224-314 1-79 (79)
2 cd02861 E_set_proteins_like E 99.8 3.2E-19 7E-24 138.0 9.1 76 225-313 2-81 (82)
3 KOG1616 Protein involved in Sn 99.6 9.8E-16 2.1E-20 145.1 7.9 84 223-316 78-162 (289)
4 cd02858 Esterase_N_term Estera 99.3 1.1E-11 2.4E-16 97.2 9.0 77 224-313 5-84 (85)
5 cd02688 E_set E or "early" set 98.9 4.4E-09 9.6E-14 77.7 7.9 69 225-305 4-74 (83)
6 cd02854 Glycogen_branching_enz 98.5 3.2E-07 6.9E-12 74.7 7.6 68 225-304 5-86 (99)
7 PF02922 CBM_48: Carbohydrate- 98.5 1.5E-07 3.2E-12 71.9 3.6 58 225-293 11-73 (85)
8 cd02860 Pullulanase_N_term Pul 97.9 5.1E-05 1.1E-09 60.4 7.2 69 225-307 8-88 (100)
9 cd05808 CBM20_alpha_amylase Al 97.8 0.00016 3.5E-09 56.6 8.3 63 226-300 2-78 (95)
10 cd02855 Glycogen_branching_enz 97.8 0.00019 4.1E-09 56.5 8.6 77 226-313 22-105 (106)
11 PF00686 CBM_20: Starch bindin 97.6 0.00017 3.6E-09 57.2 6.1 58 225-290 2-68 (96)
12 COG0296 GlgB 1,4-alpha-glucan 97.5 0.00015 3.3E-09 76.1 6.5 67 223-300 34-107 (628)
13 cd05814 CBM20_Prei4 Prei4, N-t 97.5 0.00085 1.8E-08 55.7 9.1 55 226-290 2-66 (120)
14 PRK12313 glycogen branching en 97.5 0.00038 8.3E-09 72.2 8.6 67 225-303 38-111 (633)
15 PRK12568 glycogen branching en 97.5 0.00043 9.2E-09 73.9 8.9 69 223-304 136-212 (730)
16 cd02856 Glycogen_debranching_e 97.4 0.00062 1.4E-08 54.7 7.5 65 226-304 10-91 (103)
17 cd05818 CBM20_water_dikinase P 97.3 0.0017 3.7E-08 51.8 8.8 65 225-302 2-78 (92)
18 PRK14706 glycogen branching en 97.3 0.00083 1.8E-08 70.5 8.0 67 225-304 38-112 (639)
19 cd05809 CBM20_beta_amylase Bet 97.2 0.0026 5.7E-08 51.2 8.8 70 224-302 2-86 (99)
20 cd02853 MTHase_N_term Maltooli 97.2 0.0019 4.1E-08 50.2 7.6 65 225-305 8-74 (85)
21 cd05820 CBM20_novamyl Novamyl 97.2 0.0041 9E-08 50.5 9.8 69 225-305 3-90 (103)
22 PRK14705 glycogen branching en 97.2 0.0013 2.9E-08 73.6 8.8 66 223-300 636-709 (1224)
23 PRK05402 glycogen branching en 97.1 0.0017 3.8E-08 68.6 8.8 67 225-302 131-204 (726)
24 cd02852 Isoamylase_N_term Isoa 97.1 0.0018 3.8E-08 53.1 6.8 59 225-294 7-72 (119)
25 PLN02447 1,4-alpha-glucan-bran 97.0 0.0012 2.6E-08 70.8 6.7 63 226-301 115-191 (758)
26 cd05811 CBM20_glucoamylase Glu 97.0 0.0079 1.7E-07 48.4 9.6 70 225-302 7-90 (106)
27 cd05817 CBM20_DSP Dual-specifi 96.9 0.0032 7E-08 50.7 7.0 44 235-290 13-62 (100)
28 TIGR02402 trehalose_TreZ malto 96.9 0.0022 4.8E-08 65.9 7.2 62 227-305 1-65 (542)
29 cd05807 CBM20_CGTase CGTase, C 96.8 0.013 2.9E-07 47.1 9.4 76 224-305 2-90 (101)
30 cd05467 CBM20 The family 20 ca 96.8 0.0073 1.6E-07 47.0 7.4 52 227-290 2-65 (96)
31 cd05816 CBM20_DPE2_repeat2 Dis 96.7 0.0086 1.9E-07 48.1 7.6 66 227-304 2-84 (99)
32 cd05813 CBM20_genethonin_1 Gen 96.7 0.0072 1.6E-07 47.9 7.0 53 226-290 2-62 (95)
33 PRK05402 glycogen branching en 96.6 0.004 8.8E-08 65.9 6.4 62 226-300 29-95 (726)
34 TIGR01515 branching_enzym alph 96.6 0.0074 1.6E-07 62.8 8.1 68 225-304 28-103 (613)
35 cd05810 CBM20_alpha_MTH Glucan 96.4 0.024 5.2E-07 45.8 8.5 65 226-302 2-84 (97)
36 PLN02316 synthase/transferase 96.4 0.064 1.4E-06 59.8 14.1 63 223-292 327-398 (1036)
37 PLN02316 synthase/transferase 95.6 0.071 1.5E-06 59.4 10.5 104 182-303 119-234 (1036)
38 cd05815 CBM20_DPE2_repeat1 Dis 95.4 0.066 1.4E-06 42.9 6.9 64 227-299 2-80 (101)
39 TIGR02104 pulA_typeI pullulana 95.1 0.089 1.9E-06 54.7 8.5 66 226-304 20-95 (605)
40 PF11806 DUF3327: Domain of un 94.9 0.15 3.3E-06 43.2 8.0 79 225-314 2-111 (122)
41 PF03423 CBM_25: Carbohydrate 94.6 0.054 1.2E-06 43.3 4.3 64 225-296 2-76 (87)
42 PRK10439 enterobactin/ferric e 94.4 0.18 4E-06 50.3 8.4 81 222-315 36-161 (411)
43 PLN02960 alpha-amylase 94.0 0.052 1.1E-06 59.6 4.1 59 226-291 129-198 (897)
44 cd05806 CBM20_laforin Laforin 93.3 0.83 1.8E-05 38.6 9.2 55 231-290 11-74 (112)
45 PRK03705 glycogen debranching 92.4 0.34 7.4E-06 51.5 7.1 65 226-304 20-101 (658)
46 PLN02950 4-alpha-glucanotransf 92.4 0.93 2E-05 50.2 10.5 70 224-305 152-237 (909)
47 TIGR02100 glgX_debranch glycog 92.3 0.39 8.4E-06 51.3 7.4 55 226-294 15-75 (688)
48 TIGR02102 pullulan_Gpos pullul 90.3 0.73 1.6E-05 52.0 7.3 66 226-303 328-408 (1111)
49 PLN02950 4-alpha-glucanotransf 89.8 1.9 4.1E-05 47.8 9.8 67 225-300 9-90 (909)
50 TIGR02103 pullul_strch alpha-1 88.3 2 4.4E-05 47.6 8.7 68 225-304 135-216 (898)
51 PLN03244 alpha-amylase; Provis 84.3 0.92 2E-05 49.9 3.6 61 225-291 131-201 (872)
52 cd02857 CD_pullulan_degrading_ 84.2 5.7 0.00012 31.4 7.2 58 225-290 16-79 (116)
53 PRK14510 putative bifunctional 82.5 4.8 0.0001 46.0 8.3 56 225-294 23-84 (1221)
54 PLN02877 alpha-amylase/limit d 72.1 11 0.00025 42.3 7.3 65 225-304 222-303 (970)
55 KOG3990 Uncharacterized conser 66.6 8.3 0.00018 37.7 4.3 31 157-187 230-260 (305)
56 PF01357 Pollen_allerg_1: Poll 64.9 12 0.00026 29.6 4.2 58 225-297 14-77 (82)
57 KOG0470 1,4-alpha-glucan branc 62.5 9.1 0.0002 41.9 4.1 42 227-279 115-158 (757)
58 PF02903 Alpha-amylase_N: Alph 58.8 27 0.00058 28.7 5.5 66 226-299 24-99 (120)
59 PF03370 CBM_21: Putative phos 56.7 21 0.00046 29.5 4.6 71 227-297 23-105 (113)
60 COG3794 PetE Plastocyanin [Ene 52.2 44 0.00095 29.2 5.9 53 221-287 58-111 (128)
61 TIGR03503 conserved hypothetic 51.7 33 0.00071 34.9 5.8 25 269-293 169-195 (374)
62 KOG2264 Exostosin EXT1L [Signa 49.8 19 0.0004 39.1 3.8 51 161-211 116-166 (907)
63 KOG1263 Multicopper oxidases [ 48.9 21 0.00045 37.9 4.1 24 269-292 96-120 (563)
64 PF09726 Macoilin: Transmembra 47.4 56 0.0012 35.6 7.0 31 153-183 546-576 (697)
65 PF08317 Spc7: Spc7 kinetochor 46.8 1.7E+02 0.0036 28.5 9.6 54 157-210 207-270 (325)
66 PF15290 Syntaphilin: Golgi-lo 44.7 69 0.0015 31.9 6.6 21 227-247 182-202 (305)
67 KOG0963 Transcription factor/C 39.2 65 0.0014 35.0 5.9 72 159-230 278-362 (629)
68 PF08308 PEGA: PEGA domain; I 39.0 1.3E+02 0.0029 22.1 6.1 43 226-292 3-45 (71)
69 PF14347 DUF4399: Domain of un 38.9 51 0.0011 26.8 4.1 33 269-302 49-81 (87)
70 PF11896 DUF3416: Domain of un 38.6 53 0.0012 30.1 4.6 40 245-297 55-99 (187)
71 PF13473 Cupredoxin_1: Cupredo 37.2 73 0.0016 25.3 4.7 17 270-286 73-90 (104)
72 PF12777 MT: Microtubule-bindi 36.2 52 0.0011 32.1 4.4 70 163-232 225-297 (344)
73 TIGR02375 pseudoazurin pseudoa 35.7 1.2E+02 0.0026 25.8 5.9 16 225-240 23-38 (116)
74 PF07495 Y_Y_Y: Y_Y_Y domain; 33.3 42 0.0009 24.1 2.5 25 274-298 30-58 (66)
75 PRK10785 maltodextrin glucosid 33.0 1.5E+02 0.0033 31.3 7.4 61 225-293 21-87 (598)
76 TIGR02231 conserved hypothetic 32.4 3.5E+02 0.0075 27.8 9.8 36 160-195 72-107 (525)
77 PRK11637 AmiB activator; Provi 32.3 1.3E+02 0.0029 30.0 6.6 10 199-208 111-120 (428)
78 PF12004 DUF3498: Domain of un 31.2 16 0.00035 38.3 0.0 60 162-221 422-484 (495)
79 PF06476 DUF1090: Protein of u 29.9 1.3E+02 0.0028 25.6 5.3 72 144-215 28-113 (115)
80 PF11629 Mst1_SARAH: C termina 29.3 73 0.0016 24.0 3.2 33 187-219 15-48 (49)
81 PRK11637 AmiB activator; Provi 28.2 1.5E+02 0.0033 29.6 6.2 27 160-186 76-102 (428)
82 PRK14145 heat shock protein Gr 28.1 1.9E+02 0.0041 27.0 6.4 67 157-223 43-114 (196)
83 PF04985 Phage_tube: Phage tai 26.2 2.7E+02 0.0058 24.2 6.8 63 225-304 78-151 (167)
84 PF07898 DUF1676: Protein of u 25.9 72 0.0016 25.4 2.9 57 31-104 13-69 (106)
85 TIGR02657 amicyanin amicyanin. 25.4 1.9E+02 0.0042 22.2 5.2 21 226-246 20-42 (83)
86 TIGR03102 halo_cynanin halocya 25.4 2.2E+02 0.0047 24.2 5.8 17 270-287 83-99 (115)
87 PF04880 NUDE_C: NUDE protein, 24.6 27 0.00059 31.7 0.3 48 142-195 2-52 (166)
88 cd00503 Frataxin Frataxin is a 23.5 43 0.00094 27.9 1.2 19 281-300 66-84 (105)
89 smart00787 Spc7 Spc7 kinetocho 23.1 1.9E+02 0.0042 28.5 5.8 13 199-211 254-266 (312)
90 PF13620 CarboxypepD_reg: Carb 23.0 1.3E+02 0.0027 22.2 3.6 25 268-293 35-59 (82)
91 KOG0996 Structural maintenance 22.7 1.9E+02 0.004 34.0 6.2 68 155-222 443-510 (1293)
92 PF04484 DUF566: Family of unk 22.0 1.7E+02 0.0036 28.9 5.1 73 145-220 130-209 (311)
93 PRK10093 primosomal replicatio 22.0 92 0.002 28.6 3.1 70 123-198 81-154 (171)
94 PF05738 Cna_B: Cna protein B- 22.0 1.3E+02 0.0029 21.8 3.5 24 269-293 25-50 (70)
95 PF00038 Filament: Intermediat 21.8 2.8E+02 0.0061 26.0 6.4 35 161-195 197-231 (312)
96 PF05701 WEMBL: Weak chloropla 21.8 3.3E+02 0.0072 28.4 7.5 42 159-200 379-420 (522)
97 PF09912 DUF2141: Uncharacteri 21.7 1.3E+02 0.0028 25.0 3.8 32 269-300 39-73 (112)
98 PF11797 DUF3324: Protein of u 21.4 5.2E+02 0.011 22.1 8.0 23 278-300 102-127 (140)
99 PF05546 She9_MDM33: She9 / Md 21.2 2.6E+02 0.0057 26.5 6.0 65 146-210 15-83 (207)
100 TIGR00998 8a0101 efflux pump m 21.1 4.2E+02 0.009 24.9 7.4 9 227-235 205-213 (334)
101 PLN00044 multi-copper oxidase- 20.8 73 0.0016 34.1 2.6 32 269-300 97-133 (596)
102 PF12325 TMF_TATA_bd: TATA ele 20.8 3.8E+02 0.0082 23.1 6.5 31 156-186 13-43 (120)
103 PRK14162 heat shock protein Gr 20.8 2.9E+02 0.0062 25.7 6.1 66 157-222 37-107 (194)
104 COG2433 Uncharacterized conser 20.7 2.7E+02 0.0059 30.6 6.6 61 158-218 435-501 (652)
105 PF02970 TBCA: Tubulin binding 20.6 2.3E+02 0.0049 23.0 4.8 57 162-218 28-88 (90)
106 PF12761 End3: Actin cytoskele 20.5 1.7E+02 0.0036 27.5 4.5 31 154-184 91-121 (195)
107 PF02183 HALZ: Homeobox associ 20.5 3.4E+02 0.0074 19.6 5.2 40 158-197 4-43 (45)
108 PF05524 PEP-utilisers_N: PEP- 20.3 1.8E+02 0.0039 23.8 4.2 42 169-210 31-79 (123)
No 1
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.91 E-value=1.3e-24 Score=168.72 Aligned_cols=78 Identities=35% Similarity=0.699 Sum_probs=71.7
Q ss_pred CeEEEEEEecCCcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCEeeeCCCCCee
Q 021198 224 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 303 (316)
Q Consensus 224 Lk~VTFtW~g~AkeV~VtGSFNnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPGrYEYKFIVDGeW~~DP~~PtV 303 (316)
.++|+|+|.++|++|+|+|+|++|.+.+||.+. ..+ |++++.||||.|+|||+|||.|.+||+.|++
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~------------~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~ 67 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKS------------GKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTE 67 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceEC------------CCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCcc
Confidence 368999999999999999999999987899874 344 9999999999999999999999999999999
Q ss_pred cC-CCccceEEE
Q 021198 304 TK-GGICNNILR 314 (316)
Q Consensus 304 tD-~GnvNNVLe 314 (316)
.+ +|+.||+|.
T Consensus 68 ~d~~G~~NN~i~ 79 (79)
T cd02859 68 TDDEGNVNNVID 79 (79)
T ss_pred CCCCCcEeeeEC
Confidence 87 799999984
No 2
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.79 E-value=3.2e-19 Score=138.04 Aligned_cols=76 Identities=39% Similarity=0.707 Sum_probs=67.7
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCEee-eCCCCCe
Q 021198 225 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK-VDPQRES 302 (316)
Q Consensus 225 k~VTFtW~g~-AkeV~VtGSFNnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPGrYEYKFIVDGeW~-~DP~~Pt 302 (316)
++|+|+|.++ +++|+|+|+|++|+ ..+|++. ++|.|++++.|+||.|+|||+|||.|. .||.++.
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~------------~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~ 68 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE------------GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAA 68 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC------------CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCc
Confidence 4799999988 69999999999998 4688873 579999999999999999999999999 9999997
Q ss_pred ec-C-CCccceEE
Q 021198 303 VT-K-GGICNNIL 313 (316)
Q Consensus 303 Vt-D-~GnvNNVL 313 (316)
.. + .|+.|+||
T Consensus 69 ~~~~~~g~~n~v~ 81 (82)
T cd02861 69 YVDDGFGGKNAVF 81 (82)
T ss_pred eecCCCCccceEc
Confidence 65 4 58899987
No 3
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.61 E-value=9.8e-16 Score=145.10 Aligned_cols=84 Identities=38% Similarity=0.556 Sum_probs=75.7
Q ss_pred CCeEEEEEEecCCcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCEeeeCCCCCe
Q 021198 223 GLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES 302 (316)
Q Consensus 223 gLk~VTFtW~g~AkeV~VtGSFNnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPGrYEYKFIVDGeW~~DP~~Pt 302 (316)
...+|+|+|.++++.|+|.|+|++|...++|.+.. ...|.|...+.|++|.|+|||+|||+|++|++.|+
T Consensus 78 ~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~----------~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pt 147 (289)
T KOG1616|consen 78 QGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG----------KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPT 147 (289)
T ss_pred cCCceEEEecCCCceEEEecccccccccccceecC----------CCcccceeeEecCCceEEEEEecCCceecCCCCcc
Confidence 34799999999999999999999999888888742 23455999999999999999999999999999999
Q ss_pred ecC-CCccceEEEeC
Q 021198 303 VTK-GGICNNILRVI 316 (316)
Q Consensus 303 VtD-~GnvNNVLeVe 316 (316)
+++ .|+.||++.|.
T Consensus 148 a~d~~Gn~~N~i~v~ 162 (289)
T KOG1616|consen 148 AEDSLGNLNNILEVQ 162 (289)
T ss_pred cccccCCcccceEec
Confidence 998 79999999984
No 4
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.31 E-value=1.1e-11 Score=97.18 Aligned_cols=77 Identities=25% Similarity=0.373 Sum_probs=63.9
Q ss_pred CeEEEEEEecC-CcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCEeeeCCCCC
Q 021198 224 LEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQWKVDPQRE 301 (316)
Q Consensus 224 Lk~VTFtW~g~-AkeV~VtGSFNnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPGrYEYKFIVDGeW~~DP~~P 301 (316)
...|+|+..++ |++|.|.|+|++|.. .+|+++ +.|.|++++. |.+|.|.|+|+|||.|+.||.++
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~------------~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~ 71 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWGGAGS-HPMTKD------------EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNP 71 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecCCCcc-EeCeEC------------CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCC
Confidence 35799976665 999999999998864 689874 6899999995 88999999999999999999999
Q ss_pred eec-CCCccceEE
Q 021198 302 SVT-KGGICNNIL 313 (316)
Q Consensus 302 tVt-D~GnvNNVL 313 (316)
... +.+..-|++
T Consensus 72 ~~~~~~~~~~~~~ 84 (85)
T cd02858 72 TTKPGRQVDTSGV 84 (85)
T ss_pred ceeecccccceee
Confidence 987 455554443
No 5
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.94 E-value=4.4e-09 Score=77.71 Aligned_cols=69 Identities=29% Similarity=0.453 Sum_probs=59.5
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCC-eeEEEEEEECCEeeeCCCCCe
Q 021198 225 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-GTYEIKFIVDGQWKVDPQRES 302 (316)
Q Consensus 225 k~VTFtW~g~-AkeV~VtGSFNnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~LpP-GrYEYKFIVDGeW~~DP~~Pt 302 (316)
..|+|++.++ ++.|.|.+.|++|...++|.+. ..|.|.+.+.+.+ |.|.|+|.|||.|..++..+.
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~------------~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~ 71 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV------------EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPK 71 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC------------CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChh
Confidence 4789988776 8999999999997666788763 5699999999887 999999999999999998866
Q ss_pred ecC
Q 021198 303 VTK 305 (316)
Q Consensus 303 VtD 305 (316)
..+
T Consensus 72 ~~~ 74 (83)
T cd02688 72 ADE 74 (83)
T ss_pred hhc
Confidence 665
No 6
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.53 E-value=3.2e-07 Score=74.71 Aligned_cols=68 Identities=19% Similarity=0.379 Sum_probs=51.4
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEe--------CCe-eEEEEEEE-CC
Q 021198 225 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWL--------YPG-TYEIKFIV-DG 292 (316)
Q Consensus 225 k~VTFtW~g~-AkeV~VtGSFNnW~~~-IpL~K~~~~s~~~~~~~k~~GvwsltL~L--------pPG-rYEYKFIV-DG 292 (316)
..++|+..++ |++|+|+|+||+|... .+|.+. +.|+|++++.. +.| .|.|.+.. ||
T Consensus 5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~------------~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G 72 (99)
T cd02854 5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD------------EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG 72 (99)
T ss_pred CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC------------CCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence 4688966555 9999999999999864 678874 68999999874 455 56666666 78
Q ss_pred Ee--eeCCCCCeec
Q 021198 293 QW--KVDPQRESVT 304 (316)
Q Consensus 293 eW--~~DP~~PtVt 304 (316)
+| +.||-...+.
T Consensus 73 ~~~~~~DPyA~~~~ 86 (99)
T cd02854 73 EWIDRIPAWIKYVT 86 (99)
T ss_pred CEEEEcCcceeEEE
Confidence 75 5777776654
No 7
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.45 E-value=1.5e-07 Score=71.86 Aligned_cols=58 Identities=28% Similarity=0.472 Sum_probs=45.8
Q ss_pred eEEEEEEecC-CcEEEEEeeeCC-Cccc-cccCCCCCCCccccccccCCCcEEEEEE--eCCeeEEEEEEECCE
Q 021198 225 EVVEIQYSGD-GEIVEVAGSFNG-WHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGTYEIKFIVDGQ 293 (316)
Q Consensus 225 k~VTFtW~g~-AkeV~VtGSFNn-W~~~-IpL~K~~~~s~~~~~~~k~~GvwsltL~--LpPGrYEYKFIVDGe 293 (316)
..++|+..++ |+.|.|.+.|++ |... ++|.+. ...|+|++++. +++|.+.|+|.|||.
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-----------~~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-----------DDDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-----------CTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-----------CCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 5889966555 999999999999 8754 688731 37999999999 888988888888754
No 8
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.88 E-value=5.1e-05 Score=60.43 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=52.3
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCE----
Q 021198 225 EVVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ---- 293 (316)
Q Consensus 225 k~VTFtW~g~-AkeV~VtGSFNnW~-----~~IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPGrYEYKFIVDGe---- 293 (316)
..++|+..++ |++|.|.. |++|. ..++|.+ ...|+|++.+. +.+|.+ |+|.|+|.
T Consensus 8 ~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~------------~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~ 73 (100)
T cd02860 8 EKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKR------------GENGVWSVTLDGDLEGYY-YLYEVKVYKGET 73 (100)
T ss_pred CCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeec------------CCCCEEEEEeCCccCCcE-EEEEEEEeceEE
Confidence 3588966555 99999988 88886 3467876 36899999997 566654 88888875
Q ss_pred -eeeCCCCCeecCCC
Q 021198 294 -WKVDPQRESVTKGG 307 (316)
Q Consensus 294 -W~~DP~~PtVtD~G 307 (316)
...||-...+...|
T Consensus 74 ~~~~DPyA~~~~~~~ 88 (100)
T cd02860 74 NEVVDPYAKALSANG 88 (100)
T ss_pred EEEcCcccEeEeeCC
Confidence 78899888777543
No 9
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.76 E-value=0.00016 Score=56.56 Aligned_cols=63 Identities=29% Similarity=0.578 Sum_probs=47.1
Q ss_pred EEEEEEec---CCcEEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-C--C-
Q 021198 226 VVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D--G- 292 (316)
Q Consensus 226 ~VTFtW~g---~AkeV~VtGS---FNnW~~~--IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPG-rYEYKFIV-D--G- 292 (316)
+|+|.... .|+.|+|+|+ |.+|++. ++|... ..+.|++.+.||+| .++|||++ + |
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~------------~~~~W~~~v~l~~~~~~eYKy~~~~~~~~ 69 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA------------TYPVWSGTVDLPAGTAIEYKYIKKDGSGT 69 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC------------CCCCEEEEEEeCCCCeEEEEEEEECCCCc
Confidence 46666643 4899999995 7899864 577652 56889999999987 79999996 2 3
Q ss_pred -EeeeCCCC
Q 021198 293 -QWKVDPQR 300 (316)
Q Consensus 293 -eW~~DP~~ 300 (316)
.|...++.
T Consensus 70 ~~WE~~~nr 78 (95)
T cd05808 70 VTWESGPNR 78 (95)
T ss_pred EEEecCCCE
Confidence 47666643
No 10
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.76 E-value=0.00019 Score=56.45 Aligned_cols=77 Identities=26% Similarity=0.365 Sum_probs=49.9
Q ss_pred EEEEEEec-CCcEEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEEC-CE--eeeCC
Q 021198 226 VVEIQYSG-DGEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQ--WKVDP 298 (316)
Q Consensus 226 ~VTFtW~g-~AkeV~VtGSFNnW~~-~IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPG-rYEYKFIVD-Ge--W~~DP 298 (316)
.++|+... .|+.|.|.|+|++|.. ..+|.+. ...|.|.+.+. +++| .|.|++..+ |. .+.||
T Consensus 22 ~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~-----------~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DP 90 (106)
T cd02855 22 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRR-----------GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADP 90 (106)
T ss_pred CEEEEEECCCCCEEEEEEECCCCCCcceecEEC-----------CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCC
Confidence 47885554 5999999999999964 3578764 24899999886 6666 444444444 33 35566
Q ss_pred CCCeecCCCccceEE
Q 021198 299 QRESVTKGGICNNIL 313 (316)
Q Consensus 299 ~~PtVtD~GnvNNVL 313 (316)
-...++.....++|+
T Consensus 91 Ya~~~~~~~~~~~~~ 105 (106)
T cd02855 91 YAFYSELRPGTASIV 105 (106)
T ss_pred CceeeEeCCCCeEEe
Confidence 655444433355543
No 11
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.60 E-value=0.00017 Score=57.24 Aligned_cols=58 Identities=22% Similarity=0.435 Sum_probs=45.3
Q ss_pred eEEEEEEec---CCcEEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 021198 225 EVVEIQYSG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 290 (316)
Q Consensus 225 k~VTFtW~g---~AkeV~VtGSFN---nW~~--~IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPG-rYEYKFIV 290 (316)
+.|+|.... .++.|+|+|+.. +|++ .++|..... ......|++.+.||.| .++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~--------~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEG--------TENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESS--------SSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccC--------CCCCCeEEEEEECcCCCEEEEEEEE
Confidence 578888754 489999999996 8997 367765210 1246899999999998 79999998
No 12
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.52 E-value=0.00015 Score=76.11 Aligned_cols=67 Identities=25% Similarity=0.460 Sum_probs=50.9
Q ss_pred CCeEEEEEEec-CCcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCE-----ee
Q 021198 223 GLEVVEIQYSG-DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----WK 295 (316)
Q Consensus 223 gLk~VTFtW~g-~AkeV~VtGSFNnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPGrYEYKFIVDGe-----W~ 295 (316)
|-..|+|+..+ .+..|.|.|+||+|... +|.... .++.|+|.++++ ++|| +.|||.|++. ++
T Consensus 34 g~~~~~F~vWAP~a~~V~vvgdfn~w~~~-~~~~~~---------~~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~ 102 (628)
T COG0296 34 GVSGVRFRVWAPNARRVSLVGDFNDWDGR-RMPMRD---------RKESGIWELFVPGAPPG-TRYKYELIDPSGQLRLK 102 (628)
T ss_pred CCCceEEEEECCCCCeEEEEeecCCccce-eccccc---------CCCCceEEEeccCCCCC-CeEEEEEeCCCCceeec
Confidence 55689996555 59999999999999874 443320 136799999999 9999 9999999753 36
Q ss_pred eCCCC
Q 021198 296 VDPQR 300 (316)
Q Consensus 296 ~DP~~ 300 (316)
.||-.
T Consensus 103 ~DP~a 107 (628)
T COG0296 103 ADPYA 107 (628)
T ss_pred cCchh
Confidence 66654
No 13
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.48 E-value=0.00085 Score=55.74 Aligned_cols=55 Identities=24% Similarity=0.558 Sum_probs=43.6
Q ss_pred EEEEEEec----CCcEEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 021198 226 VVEIQYSG----DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 290 (316)
Q Consensus 226 ~VTFtW~g----~AkeV~VtGS---FNnW~~~--IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPG-rYEYKFIV 290 (316)
.|+|.... .++.|+|+|+ +.+|++. .+|.... .....|++.+.||++ .++|||++
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~----------~~~~~W~~~v~lp~~~~veYkY~~ 66 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKED----------DDCNLWKASIELPRGVDFQYRYFV 66 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCC----------CcCCccEEEEEECCCCeEEEEEEE
Confidence 46776655 3899999999 8999854 5776520 145789999999998 89999999
No 14
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.48 E-value=0.00038 Score=72.19 Aligned_cols=67 Identities=22% Similarity=0.334 Sum_probs=49.0
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEE-CCEe--eeC
Q 021198 225 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIV-DGQW--KVD 297 (316)
Q Consensus 225 k~VTFtW~g~-AkeV~VtGSFNnW~~~-IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPG-rYEYKFIV-DGeW--~~D 297 (316)
..|+|+..++ |++|+|.|+|++|... .+|.+. ..|+|++.+. +.+| .|.|++.+ ||.| ..|
T Consensus 38 ~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~------------~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 105 (633)
T PRK12313 38 KGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR------------ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKID 105 (633)
T ss_pred ccEEEEEECCCCCEEEEEEecCCCCccccccccc------------CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCC
Confidence 3799966665 9999999999999864 578763 6899999998 4555 67777654 5765 455
Q ss_pred CCCCee
Q 021198 298 PQRESV 303 (316)
Q Consensus 298 P~~PtV 303 (316)
|-...+
T Consensus 106 Pya~~~ 111 (633)
T PRK12313 106 PFAFYF 111 (633)
T ss_pred CceEEE
Confidence 554443
No 15
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.46 E-value=0.00043 Score=73.92 Aligned_cols=69 Identities=26% Similarity=0.431 Sum_probs=51.9
Q ss_pred CCeEEEEEEecC-CcEEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE---CCEee-
Q 021198 223 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQWK- 295 (316)
Q Consensus 223 gLk~VTFtW~g~-AkeV~VtGSFNnW~~~-IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPGrYEYKFIV---DGeW~- 295 (316)
+-.-|+|+..++ |+.|.|+|+||+|... .+|.+. ..|+|++.++ +.+| ..|||.| ||.+.
T Consensus 136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~------------~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~ 202 (730)
T PRK12568 136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR------------IGGFWELFLPRVEAG-ARYKYAITAADGRVLL 202 (730)
T ss_pred CCCcEEEEEECCCCCEEEEEEecCCCCccceecccC------------CCCEEEEEECCCCCC-CEEEEEEEcCCCeEee
Confidence 445789966555 9999999999999864 578752 6899999996 7777 3577777 78764
Q ss_pred -eCCCCCeec
Q 021198 296 -VDPQRESVT 304 (316)
Q Consensus 296 -~DP~~PtVt 304 (316)
.||-...+.
T Consensus 203 k~DPYA~~~e 212 (730)
T PRK12568 203 KADPVARQTE 212 (730)
T ss_pred cCCCcceEee
Confidence 677665543
No 16
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.43 E-value=0.00062 Score=54.71 Aligned_cols=65 Identities=17% Similarity=0.293 Sum_probs=48.3
Q ss_pred EEEEEEecC-CcEEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECC---------
Q 021198 226 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG--------- 292 (316)
Q Consensus 226 ~VTFtW~g~-AkeV~VtGSFNnW~--~~IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPGrYEYKFIVDG--------- 292 (316)
.++|+..++ |+.|.|.. |++|. ..++|++. ..|+|.+.+. +.+|. .|+|.|||
T Consensus 10 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~------------~~GvW~~~v~~~~~g~-~Y~y~i~g~~~p~~~~~ 75 (103)
T cd02856 10 GCNFAVHSENATRIELCL-FDEDGSETRLPLTEE------------YGGVWHGFLPGIKAGQ-RYGFRVHGPYDPERGLR 75 (103)
T ss_pred CeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc------------cCCEEEEEECCCCCCC-EEEEEECCccCcccCcc
Confidence 478866555 99999998 66664 34678763 5899999995 66765 79999999
Q ss_pred ----EeeeCCCCCeec
Q 021198 293 ----QWKVDPQRESVT 304 (316)
Q Consensus 293 ----eW~~DP~~PtVt 304 (316)
....||-...+.
T Consensus 76 ~~~~~~~~DPYA~~~~ 91 (103)
T cd02856 76 FNPAKLLLDPYARALD 91 (103)
T ss_pred cCCCeEEecCCcceEc
Confidence 566677666554
No 17
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.33 E-value=0.0017 Score=51.79 Aligned_cols=65 Identities=28% Similarity=0.477 Sum_probs=48.9
Q ss_pred eEEEEEEec---CCcEEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CC--
Q 021198 225 EVVEIQYSG---DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG-- 292 (316)
Q Consensus 225 k~VTFtW~g---~AkeV~VtGSF---NnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPG-rYEYKFIV---DG-- 292 (316)
..|+|.... .|+.++|+|+- .+|++..+|.. ..+.|++.+.+|+| .++|||++ ||
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~-------------~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v 68 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNW-------------TENGWVCDLELDGGELVEYKFVIVKRDGSV 68 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCcccc-------------CCCCEEEEEEeCCCCcEEEEEEEEcCCCCE
Confidence 356776654 38999999987 59997667754 24569999999988 89999999 44
Q ss_pred EeeeCCCCCe
Q 021198 293 QWKVDPQRES 302 (316)
Q Consensus 293 eW~~DP~~Pt 302 (316)
.|...++.-.
T Consensus 69 ~WE~g~Nr~~ 78 (92)
T cd05818 69 IWEGGNNRVL 78 (92)
T ss_pred EEEeCCCEEE
Confidence 3877665443
No 18
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.25 E-value=0.00083 Score=70.53 Aligned_cols=67 Identities=31% Similarity=0.451 Sum_probs=49.5
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECC---Ee--ee
Q 021198 225 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG---QW--KV 296 (316)
Q Consensus 225 k~VTFtW~g~-AkeV~VtGSFNnW~~~-IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPGrYEYKFIVDG---eW--~~ 296 (316)
..|+|+..++ |++|.|.|+||+|... .+|.+. ..|+|++.+. +.+| ..|||.|+| .+ +.
T Consensus 38 ~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~------------~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~ 104 (639)
T PRK14706 38 EGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL------------DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKM 104 (639)
T ss_pred ccEEEEEECCCCCEEEEEEecCCccccccccccc------------CCCEEEEEECCCCCC-CEEEEEEECCCCCEEecc
Confidence 3689966555 9999999999999864 588763 5799999996 4555 468888864 43 67
Q ss_pred CCCCCeec
Q 021198 297 DPQRESVT 304 (316)
Q Consensus 297 DP~~PtVt 304 (316)
||-...+.
T Consensus 105 DPYa~~~~ 112 (639)
T PRK14706 105 DPYGSFFE 112 (639)
T ss_pred CcceEEEe
Confidence 77665443
No 19
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.21 E-value=0.0026 Score=51.15 Aligned_cols=70 Identities=23% Similarity=0.348 Sum_probs=49.1
Q ss_pred CeEEEEEEec----CCcEEEEEe---eeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---C
Q 021198 224 LEVVEIQYSG----DGEIVEVAG---SFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 291 (316)
Q Consensus 224 Lk~VTFtW~g----~AkeV~VtG---SFNnW~~~I-pL~K~~~~s~~~~~~~k~~GvwsltL~LpPG-rYEYKFIV---D 291 (316)
.++|+|.... .++.|+|+| ++.+|+... +|.... ....+.|++.+.||+| .++|||++ |
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~---------~~~~~~W~~~~~lp~~~~veyKyv~~~~~ 72 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYY---------NSHSNDWRGTVHLPAGRNIEFKAIKKSKD 72 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhcccc---------CCCCCCEEEEEEecCCCcEEEEEEEEcCC
Confidence 3689998743 389999999 567998641 243210 0245789999999998 79999999 4
Q ss_pred C---EeeeCCCCCe
Q 021198 292 G---QWKVDPQRES 302 (316)
Q Consensus 292 G---eW~~DP~~Pt 302 (316)
| .|...++.-.
T Consensus 73 ~~~~~WE~g~nr~~ 86 (99)
T cd05809 73 GTNKSWQGGQQSWY 86 (99)
T ss_pred CCeeEEecCCCeeE
Confidence 4 2766665433
No 20
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.19 E-value=0.0019 Score=50.22 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=47.1
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEC-CEeeeCCCCCe
Q 021198 225 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD-GQWKVDPQRES 302 (316)
Q Consensus 225 k~VTFtW~g~-AkeV~VtGSFNnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPGrYEYKFIVD-GeW~~DP~~Pt 302 (316)
..++|+..++ |++|.|...+ |. .++|.+. ..|+|++.+..-+|. .|+|.|+ |..+.||....
T Consensus 8 ~~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~------------~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 8 GGTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD------------GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred CCEEEEEeCCCCCEEEEEecC--CC-cccCccC------------CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence 4688966555 9999999643 53 4788763 689999998633775 4677776 56889998887
Q ss_pred ecC
Q 021198 303 VTK 305 (316)
Q Consensus 303 VtD 305 (316)
...
T Consensus 72 ~~~ 74 (85)
T cd02853 72 QPE 74 (85)
T ss_pred CCC
Confidence 544
No 21
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.19 E-value=0.0041 Score=50.54 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=51.3
Q ss_pred eEEEEEEec-----CCcEEEEEeee---CCCcccc-----ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 021198 225 EVVEIQYSG-----DGEIVEVAGSF---NGWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 290 (316)
Q Consensus 225 k~VTFtW~g-----~AkeV~VtGSF---NnW~~~I-----pL~K~~~~s~~~~~~~k~~GvwsltL~LpPG-rYEYKFIV 290 (316)
++|+|.... .|+.|+|+|+- .+|++.. +|.. .....|.+.+.||.| ..+|||++
T Consensus 3 ~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~------------~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 3 IPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC------------PNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred ccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc------------CCCCCEEEEEEcCCCCcEEEEEEE
Confidence 689999863 38999999987 4998632 4432 245789999999999 79999999
Q ss_pred ---CCE--eeeCCCCCeecC
Q 021198 291 ---DGQ--WKVDPQRESVTK 305 (316)
Q Consensus 291 ---DGe--W~~DP~~PtVtD 305 (316)
||. |...++.-....
T Consensus 71 ~~~~g~v~WE~g~Nr~~~~p 90 (103)
T cd05820 71 APADGTGTWEGGSNHAYTTP 90 (103)
T ss_pred ECCCCCEEEEeCCCEeEECC
Confidence 453 877776554444
No 22
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.16 E-value=0.0013 Score=73.60 Aligned_cols=66 Identities=33% Similarity=0.617 Sum_probs=48.7
Q ss_pred CCeEEEEEEec-CCcEEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC---CEe--
Q 021198 223 GLEVVEIQYSG-DGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQW-- 294 (316)
Q Consensus 223 gLk~VTFtW~g-~AkeV~VtGSFNnW~~~-IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPGrYEYKFIVD---GeW-- 294 (316)
+-..|+|+..+ .|+.|.|+|+||+|... .+|.+. ...|+|++.++ +.+|. .|||.|+ |.|
T Consensus 636 ~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-----------~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~ 703 (1224)
T PRK14705 636 DVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-----------GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVE 703 (1224)
T ss_pred CCCeEEEEEECCCCCEEEEEEEecCCCCCcccceEC-----------CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEe
Confidence 34578895555 59999999999999874 467653 25799999996 88885 5888884 555
Q ss_pred eeCCCC
Q 021198 295 KVDPQR 300 (316)
Q Consensus 295 ~~DP~~ 300 (316)
+.||-.
T Consensus 704 k~DPyA 709 (1224)
T PRK14705 704 KADPLA 709 (1224)
T ss_pred cCCccc
Confidence 456544
No 23
>PRK05402 glycogen branching enzyme; Provisional
Probab=97.11 E-value=0.0017 Score=68.62 Aligned_cols=67 Identities=28% Similarity=0.466 Sum_probs=48.7
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEEC-CEe--eeC
Q 021198 225 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVD 297 (316)
Q Consensus 225 k~VTFtW~g~-AkeV~VtGSFNnW~~~-IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPG-rYEYKFIVD-GeW--~~D 297 (316)
..|+|+..++ |++|.|.|+||+|... .+|.+. ...|+|++.+. +++| .|.|++..+ |.| ..|
T Consensus 131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 199 (726)
T PRK05402 131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-----------GESGVWELFIPGLGEGELYKFEILTADGELLLKAD 199 (726)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCCccccceEc-----------CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCC
Confidence 4689976665 9999999999999764 578763 25799999986 6777 777777665 454 455
Q ss_pred CCCCe
Q 021198 298 PQRES 302 (316)
Q Consensus 298 P~~Pt 302 (316)
|-.-.
T Consensus 200 PYa~~ 204 (726)
T PRK05402 200 PYAFA 204 (726)
T ss_pred CceEE
Confidence 54433
No 24
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.09 E-value=0.0018 Score=53.14 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=42.6
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCc---c--ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCEe
Q 021198 225 EVVEIQYSGD-GEIVEVAGSFNGWH---H--RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 294 (316)
Q Consensus 225 k~VTFtW~g~-AkeV~VtGSFNnW~---~--~IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPGrYEYKFIVDGeW 294 (316)
..++|+..++ |+.|.|.. |++|. + .++|.+.. .+..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 7 ~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~---------~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~ 72 (119)
T cd02852 7 GGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSV---------NRTGDVWHVFVEGLKPGQ-LYGYRVDGPF 72 (119)
T ss_pred CCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcc---------cccCCEEEEEECCCCCCC-EEEEEECCCC
Confidence 3588966555 99999998 88886 2 34675531 023699999986 77886 6999999844
No 25
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.03 E-value=0.0012 Score=70.82 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=45.6
Q ss_pred EEEEEEec-CCcEEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEe-------CCeeEEEEEEEC---CE
Q 021198 226 VVEIQYSG-DGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWL-------YPGTYEIKFIVD---GQ 293 (316)
Q Consensus 226 ~VTFtW~g-~AkeV~VtGSFNnW~~~-IpL~K~~~~s~~~~~~~k~~GvwsltL~L-------pPGrYEYKFIVD---Ge 293 (316)
.++|+..+ .|+.|+|+|+||+|... .+|++. +.|+|++.++- +.| ..|||.|. |.
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~------------~~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~ 181 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKN------------EFGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGR 181 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeC------------CCCEEEEEECCccccccCCCC-CEEEEEEEeCCCc
Confidence 68885544 59999999999999864 578763 68999999863 344 36777774 54
Q ss_pred --eeeCCCCC
Q 021198 294 --WKVDPQRE 301 (316)
Q Consensus 294 --W~~DP~~P 301 (316)
++.||-..
T Consensus 182 ~~~r~dpya~ 191 (758)
T PLN02447 182 WVDRIPAWIK 191 (758)
T ss_pred EEeecCchHh
Confidence 45666443
No 26
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=97.00 E-value=0.0079 Score=48.37 Aligned_cols=70 Identities=30% Similarity=0.604 Sum_probs=49.0
Q ss_pred eEEEEEEec---CCcEEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CC
Q 021198 225 EVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 292 (316)
Q Consensus 225 k~VTFtW~g---~AkeV~VtGSF---NnW~~~--IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPG-rYEYKFIV---DG 292 (316)
+.|+|.... .|+.|+|+|+- .+|++. ++|.... .+...+.|++.+.||+| .++|||+| ||
T Consensus 7 v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~--------~t~~~~~W~~~v~lp~~~~veYKy~~~~~~~ 78 (106)
T cd05811 7 VAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQ--------YTSSNPLWSVTIPLPAGTSFEYKFIRKESDG 78 (106)
T ss_pred EEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCccccccc--------CccCCCcEEEEEEeCCCCcEEEEEEEEcCCC
Confidence 578887654 38999999986 489864 5675320 01245789999999988 69999996 23
Q ss_pred --EeeeCCCCCe
Q 021198 293 --QWKVDPQRES 302 (316)
Q Consensus 293 --eW~~DP~~Pt 302 (316)
.|...++.-.
T Consensus 79 ~~~WE~~~nr~~ 90 (106)
T cd05811 79 SVTWESDPNRSY 90 (106)
T ss_pred cEEEecCCCeEE
Confidence 3877664433
No 27
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.94 E-value=0.0032 Score=50.74 Aligned_cols=44 Identities=25% Similarity=0.497 Sum_probs=36.2
Q ss_pred CcEEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 021198 235 GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 290 (316)
Q Consensus 235 AkeV~VtGSF---NnW~~~--IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPG-rYEYKFIV 290 (316)
|+.|+|+|+- .+|++. ++|.. .....|++.+.+|+| .++|||+|
T Consensus 13 Ge~l~v~Gs~~~LG~W~~~~a~~m~~------------~~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 13 GEAVYISGNCNQLGNWNPSKAKRMQW------------NEGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCEEEEEeCcHHHCCCCccccCcccC------------CCCCCEEEEEEECCCCcEEEEEEE
Confidence 8999999994 689864 56754 246789999999988 79999998
No 28
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.91 E-value=0.0022 Score=65.87 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=48.9
Q ss_pred EEEEEec-CCcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECC-EeeeCCCCCee
Q 021198 227 VEIQYSG-DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG-QWKVDPQRESV 303 (316)
Q Consensus 227 VTFtW~g-~AkeV~VtGSFNnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPGrYEYKFIVDG-eW~~DP~~PtV 303 (316)
|+|+..+ .|++|.|.+. + ..++|.+. ..|+|++++. +.+| |.|+|.||| ..+.||.....
T Consensus 1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~------------~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~ 63 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G-ALHAMQRL------------GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ 63 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C-CEEeCeEC------------CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence 5786555 4999999972 3 34789873 6799999997 7788 789999999 78899988876
Q ss_pred cC
Q 021198 304 TK 305 (316)
Q Consensus 304 tD 305 (316)
..
T Consensus 64 ~~ 65 (542)
T TIGR02402 64 PD 65 (542)
T ss_pred cc
Confidence 54
No 29
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.80 E-value=0.013 Score=47.09 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=50.2
Q ss_pred CeEEEEEEe-c---CCcEEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CC
Q 021198 224 LEVVEIQYS-G---DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 292 (316)
Q Consensus 224 Lk~VTFtW~-g---~AkeV~VtGSF---NnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPG-rYEYKFIV---DG 292 (316)
.++|+|... . .|+.|+|+|+- .+|.+...+..... ........|.+.+.||.| .++|||++ ||
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~------~~~~~~~~W~~~~~lp~~~~~eyK~~~~~~~~ 75 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFN------QVVYQYPNWYYDVSVPAGTTIEFKFIKKNGDN 75 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccc------cCCCcCCcEEEEEEcCCCCcEEEEEEEECCCC
Confidence 468888874 3 38999999987 49986422111100 001246789999999999 79999998 35
Q ss_pred E--eeeCCCCCeecC
Q 021198 293 Q--WKVDPQRESVTK 305 (316)
Q Consensus 293 e--W~~DP~~PtVtD 305 (316)
. |...++.-....
T Consensus 76 ~~~WE~g~nr~~~~p 90 (101)
T cd05807 76 TVTWESGSNHTYTAP 90 (101)
T ss_pred CEEEEeCCCEEEeCC
Confidence 3 877665443333
No 30
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.75 E-value=0.0073 Score=46.96 Aligned_cols=52 Identities=27% Similarity=0.494 Sum_probs=39.9
Q ss_pred EEEEEec---CCcEEEEEeeeC---CCccc--cccCCCCCCCccccccccC-CCcEEEEEEeCC--e-eEEEEEEE
Q 021198 227 VEIQYSG---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRK-SRLWSTVLWLYP--G-TYEIKFIV 290 (316)
Q Consensus 227 VTFtW~g---~AkeV~VtGSFN---nW~~~--IpL~K~~~~s~~~~~~~k~-~GvwsltL~LpP--G-rYEYKFIV 290 (316)
|+|.... .|+.|+|+|+.. +|++. ++|... + .+.|++.+.+|+ | .++|||++
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~------------~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTS------------NSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCC------------CCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 4454432 489999999984 89853 567642 3 688999999999 7 79999998
No 31
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.70 E-value=0.0086 Score=48.11 Aligned_cols=66 Identities=26% Similarity=0.571 Sum_probs=47.1
Q ss_pred EEEEEec----CCcEEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--eEEEEEEE--C--
Q 021198 227 VEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--D-- 291 (316)
Q Consensus 227 VTFtW~g----~AkeV~VtGSF---NnW~~~--IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPG--rYEYKFIV--D-- 291 (316)
|+|+... .++.|+|+|+. .+|++. ++|... ....|++.+.+|++ .++|||++ +
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~~p~~~~~ieYKyvi~~~~~ 69 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDV------------GFPIWEADIDISKDSFPFEYKYIIANKDS 69 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCC------------CCCcEEEEEEeCCCCccEEEEEEEEeCCC
Confidence 5665543 48999999986 589864 567642 46789999999886 59999998 2
Q ss_pred C--EeeeCCCCCeec
Q 021198 292 G--QWKVDPQRESVT 304 (316)
Q Consensus 292 G--eW~~DP~~PtVt 304 (316)
| .|..-++.-...
T Consensus 70 ~~~~WE~g~nr~~~~ 84 (99)
T cd05816 70 GVVSWENGPNRELSA 84 (99)
T ss_pred CcEEEEcCCCeEEEC
Confidence 3 277665544433
No 32
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.67 E-value=0.0072 Score=47.91 Aligned_cols=53 Identities=28% Similarity=0.511 Sum_probs=41.2
Q ss_pred EEEEEEec----CCcEEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 021198 226 VVEIQYSG----DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 290 (316)
Q Consensus 226 ~VTFtW~g----~AkeV~VtGSF---NnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPG-rYEYKFIV 290 (316)
+|+|.... +++.|+|+|+- .+|+...+|... ..+.|++.+.||+| .++|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~------------~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV------------KDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC------------CCCCEEEEEEecCCCcEEEEEEE
Confidence 56776644 35778899987 489877788642 46789999999998 59999998
No 33
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.58 E-value=0.004 Score=65.91 Aligned_cols=62 Identities=21% Similarity=0.117 Sum_probs=44.9
Q ss_pred EEEE-EEecCCcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE--CCE--eeeCCCC
Q 021198 226 VVEI-QYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ--WKVDPQR 300 (316)
Q Consensus 226 ~VTF-tW~g~AkeV~VtGSFNnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPGrYEYKFIV--DGe--W~~DP~~ 300 (316)
-|+| +|.+.|++|.|+|+||+ ....+|.+. ...|+|++.+++..|.. |||.| ||. .+.||-.
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-----------~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-----------HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEc-----------CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence 5778 55556999999999996 334688763 36899999999777733 55555 885 5666655
No 34
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.57 E-value=0.0074 Score=62.78 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=49.3
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC---CE--eee
Q 021198 225 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQ--WKV 296 (316)
Q Consensus 225 k~VTFtW~g~-AkeV~VtGSFNnW~~~-IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPGrYEYKFIVD---Ge--W~~ 296 (316)
..++|+..+| |+.|.|.|+||+|... .+|.+. ...|+|++.+. +.+|. .|+|.|+ |. ++.
T Consensus 28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~ 95 (613)
T TIGR01515 28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-----------NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKA 95 (613)
T ss_pred CcEEEEEECCCCCEEEEEEecCCCCCceecceEe-----------cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeC
Confidence 4688965555 9999999999999764 477653 24799999986 46665 5788774 54 577
Q ss_pred CCCCCeec
Q 021198 297 DPQRESVT 304 (316)
Q Consensus 297 DP~~PtVt 304 (316)
||-.-.+.
T Consensus 96 DPYA~~~~ 103 (613)
T TIGR01515 96 DPYAFYAE 103 (613)
T ss_pred CCCEeeec
Confidence 88665444
No 35
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.39 E-value=0.024 Score=45.78 Aligned_cols=65 Identities=26% Similarity=0.447 Sum_probs=46.7
Q ss_pred EEEEEEe-c---CCcEEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CC
Q 021198 226 VVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 292 (316)
Q Consensus 226 ~VTFtW~-g---~AkeV~VtGSFN---nW~~~--IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPG-rYEYKFIV---DG 292 (316)
+|+|... + .++.|+|+|+.. +|++. ++|... ....|.+.+.||.| ..+|||++ +|
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~lp~~~~veyKyv~~~~~~ 69 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT------------AYPTWSGSISLPASTNVEWKCLKRNETN 69 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC------------CCCeEEEEEEcCCCCeEEEEEEEEcCCC
Confidence 5677643 2 389999999884 99864 456431 45789999999998 89999998 22
Q ss_pred -----EeeeCCCCCe
Q 021198 293 -----QWKVDPQRES 302 (316)
Q Consensus 293 -----eW~~DP~~Pt 302 (316)
.|...++.-.
T Consensus 70 ~~~~v~WE~g~Nr~~ 84 (97)
T cd05810 70 PTAGVQWQGGGNNQL 84 (97)
T ss_pred CcceEEEeeCCCEEE
Confidence 4766665543
No 36
>PLN02316 synthase/transferase
Probab=96.36 E-value=0.064 Score=59.76 Aligned_cols=63 Identities=13% Similarity=0.362 Sum_probs=45.9
Q ss_pred CCeEEEEEEec------CCcEEEEEeeeCCCccccc--cCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-CC
Q 021198 223 GLEVVEIQYSG------DGEIVEVAGSFNGWHHRIK--MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG 292 (316)
Q Consensus 223 gLk~VTFtW~g------~AkeV~VtGSFNnW~~~Ip--L~K~~~~s~~~~~~~k~~GvwsltL~LpPGrYEYKFIV-DG 292 (316)
.-.+|++.|+. +..+|+|.|.||+|..... +... +......+.|.+++.+|+.-|-.-|+. ||
T Consensus 327 aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~-------~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg 398 (1036)
T PLN02316 327 AGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLV-------KSEEKDGDWWYAEVVVPERALVLDWVFADG 398 (1036)
T ss_pred CCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceee-------cccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence 34689999973 3789999999999987421 2111 111234568999999999999999997 56
No 37
>PLN02316 synthase/transferase
Probab=95.65 E-value=0.071 Score=59.39 Aligned_cols=104 Identities=19% Similarity=0.409 Sum_probs=70.0
Q ss_pred HHHHHHhHhhHhHHhhhhhhhhhhhcccchHHHHHHhhhCCCCeEEEEEEec------CCcEEEEEeeeCCCccc---cc
Q 021198 182 IEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSG------DGEIVEVAGSFNGWHHR---IK 252 (316)
Q Consensus 182 l~~~k~~ls~lq~kae~~i~ea~~li~eK~~~L~aae~aLsgLk~VTFtW~g------~AkeV~VtGSFNnW~~~---Ip 252 (316)
|+.+++-.+.+|.+|+...+...++.-.= +.+....+|++.|+. +..+|.|.|-||+|.-. .+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~P--------~~~~a~~~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~ 190 (1036)
T PLN02316 119 LERENLRKREIEELAEENFSRGNKLFVYP--------QVVKPDSDIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTER 190 (1036)
T ss_pred hhHHHHHHHHHHHHHhhccCCCCeEEecc--------ccccCCCeeEEEEcCCCCccCCCCceEEEecccccccccccee
Confidence 33334445567777777777766666543 223344577777753 26889999999999764 24
Q ss_pred cCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-CCE--eeeCCCCCee
Q 021198 253 MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DGQ--WKVDPQRESV 303 (316)
Q Consensus 253 L~K~~~~s~~~~~~~k~~GvwsltL~LpPGrYEYKFIV-DGe--W~~DP~~PtV 303 (316)
|.+.. .+.++|++.+.+|++-|..-|+. ||. |-.+..+...
T Consensus 191 ~~k~~----------~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yDNN~~~Df~ 234 (1036)
T PLN02316 191 LEKTE----------LGGDWWSCKLHIPKEAYKMDFVFFNGQNVYDNNDHKDFC 234 (1036)
T ss_pred ccccc----------cCCCeEEEEEecCccceEEEEEEeCCccccccCCCCceE
Confidence 54421 25778999999999999999998 664 5555544443
No 38
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.40 E-value=0.066 Score=42.86 Aligned_cols=64 Identities=17% Similarity=0.392 Sum_probs=43.5
Q ss_pred EEEEEec--C-CcEEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CCE-
Q 021198 227 VEIQYSG--D-GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DGQ- 293 (316)
Q Consensus 227 VTFtW~g--~-AkeV~VtGSF---NnW~~~--IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPG-rYEYKFIV---DGe- 293 (316)
|+|...+ . |+.|+|+|+- .+|.+. .+|... .......|++.+.+|++ .++|||+| +|.
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~---------~~~~~~~W~~~v~~~~~~~veYky~v~~~~~~~ 72 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPS---------HQGDVLVWSGSISVPPGFSSEYNYYVVDDRKSV 72 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeec---------CCCCCCEEEEEEEeCCCCcEEEEEEEEcCCCcE
Confidence 4555543 3 8999999987 589764 567431 01134589999999887 69999999 342
Q ss_pred --eeeCCC
Q 021198 294 --WKVDPQ 299 (316)
Q Consensus 294 --W~~DP~ 299 (316)
|...++
T Consensus 73 ~~wE~g~n 80 (101)
T cd05815 73 LRSESGEK 80 (101)
T ss_pred EEeecCCC
Confidence 655554
No 39
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=95.08 E-value=0.089 Score=54.72 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=46.8
Q ss_pred EEEEEEecC-CcEEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEECCE--ee
Q 021198 226 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVDGQ--WK 295 (316)
Q Consensus 226 ~VTFtW~g~-AkeV~VtGSFNnW~~-----~IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPG-rYEYKFIVDGe--W~ 295 (316)
.|+|+..++ |+.|.|.+ |++|.. .++|.+. ..|+|++.+. +.+| .|.|++..+|. +.
T Consensus 20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~------------~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~ 86 (605)
T TIGR02104 20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG------------ENGVWSAVLEGDLHGYFYTYQVCINGKWRET 86 (605)
T ss_pred eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC------------CCCEEEEEECCCCCCCEEEEEEEcCCCeEEE
Confidence 489966555 99999997 888853 3577752 5799999997 5666 44444444565 58
Q ss_pred eCCCCCeec
Q 021198 296 VDPQRESVT 304 (316)
Q Consensus 296 ~DP~~PtVt 304 (316)
.||-...+.
T Consensus 87 ~DPya~~~~ 95 (605)
T TIGR02104 87 VDPYAKAVT 95 (605)
T ss_pred cCCCcceec
Confidence 898776554
No 40
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=94.87 E-value=0.15 Score=43.16 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=53.4
Q ss_pred eEEEEEEe----cCCcEEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEECCE-
Q 021198 225 EVVEIQYS----GDGEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ- 293 (316)
Q Consensus 225 k~VTFtW~----g~AkeV~VtGSFNnW~~~-----IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPG-rYEYKFIVDGe- 293 (316)
+.|||-|. +....|.|-|..|++..+ ..|.+. .+..+|..++.|+.+ +=.|.|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl-----------~gTDVW~~t~~lp~d~rgSY~~~p~~~~ 70 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRL-----------PGTDVWYWTYRLPADWRGSYSFIPDVPD 70 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE------------TTSSEEEEEEEEETT-EEEEEEEEES-T
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeC-----------CCCceEEEEEEECcccEEEEEEEecCcc
Confidence 57999999 447889999999999653 346654 367899999999998 88999997533
Q ss_pred ---------------eeeCCCCCeec-C----CCccceEEE
Q 021198 294 ---------------WKVDPQRESVT-K----GGICNNILR 314 (316)
Q Consensus 294 ---------------W~~DP~~PtVt-D----~GnvNNVLe 314 (316)
-..||-||... . .|..-++++
T Consensus 71 ~~~~~r~~~r~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~ 111 (122)
T PF11806_consen 71 ARGAQREWWRAILAQAQADPLNPRPWPNGAQDRGNAASVLE 111 (122)
T ss_dssp -HHHHHHHHHHHGGG-B--TTSSSEEE-TT---SSEEEEEE
T ss_pred cchhHHHHHHHHHhccCCCCCCCCCCCCCccccccccCcee
Confidence 35799999864 2 367777765
No 41
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=94.61 E-value=0.054 Score=43.26 Aligned_cols=64 Identities=25% Similarity=0.561 Sum_probs=39.0
Q ss_pred eEEEEEEec------CCcEEEEEeeeCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-CC--E
Q 021198 225 EVVEIQYSG------DGEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG--Q 293 (316)
Q Consensus 225 k~VTFtW~g------~AkeV~VtGSFNnW~~~--IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPGrYEYKFIV-DG--e 293 (316)
.+|++.|.+ ++..|.+.+.|++|... +.|.+.. .....+.|++++.+|..-|...|+. || .
T Consensus 2 ~~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~--------~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~ 73 (87)
T PF03423_consen 2 ETVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMC--------VPDEGGWWKATVDVPEDAYVMDFVFNDGAGN 73 (87)
T ss_dssp SEEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEES--------S---TTEEEEEEE--TTTSEEEEEEE-SSS-
T ss_pred CEEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceee--------eeecCCEEEEEEEEcCCceEEEEEEcCCCCc
Confidence 368888843 37899999999999875 4565421 0013799999999999999999987 65 5
Q ss_pred eee
Q 021198 294 WKV 296 (316)
Q Consensus 294 W~~ 296 (316)
|-.
T Consensus 74 wDN 76 (87)
T PF03423_consen 74 WDN 76 (87)
T ss_dssp EES
T ss_pred EeC
Confidence 643
No 42
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=94.36 E-value=0.18 Score=50.31 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=56.3
Q ss_pred CCCeEEEEEEecC-C-------cEEEEEeeeCCCc------cccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEE
Q 021198 222 SGLEVVEIQYSGD-G-------EIVEVAGSFNGWH------HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEI 286 (316)
Q Consensus 222 sgLk~VTFtW~g~-A-------keV~VtGSFNnW~------~~IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPG-rYEY 286 (316)
.+.+.|||-|.++ + +.|+|. .|+.. ....|.+- .+..+|..++.||.. +-.|
T Consensus 36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~--~n~~tdh~~~~~~~~l~rl-----------~~tDvW~~~~~~p~~~r~sY 102 (411)
T PRK10439 36 DGMVRVTFWWRDPQGDEEHSTIRRVWIY--INGVTDHHQNSQPQSLQRI-----------AGTDVWQWSTELSANWRGSY 102 (411)
T ss_pred CCcEEEEEEeeCCCCCcccccceeEEEe--CCCCCCcCccCCcchhhcc-----------CCCceEEEEEEECcccEEEE
Confidence 4568999999975 3 248874 23333 33367775 368899999999999 8999
Q ss_pred EEEEC---C-------------------------EeeeCCCCCeecC--CCccceEEEe
Q 021198 287 KFIVD---G-------------------------QWKVDPQRESVTK--GGICNNILRV 315 (316)
Q Consensus 287 KFIVD---G-------------------------eW~~DP~~PtVtD--~GnvNNVLeV 315 (316)
+|+++ . .-+.||.||.... .|...|+|++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l 161 (411)
T PRK10439 103 CFIPTERDDIFSAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM 161 (411)
T ss_pred EEEeccccccccccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence 99993 1 1148999998753 2444577664
No 43
>PLN02960 alpha-amylase
Probab=94.04 E-value=0.052 Score=59.59 Aligned_cols=59 Identities=19% Similarity=0.388 Sum_probs=44.1
Q ss_pred EEEE-EEecCCcEEEEEeeeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEE--eCCee-------EEEEEEEC
Q 021198 226 VVEI-QYSGDGEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGT-------YEIKFIVD 291 (316)
Q Consensus 226 ~VTF-tW~g~AkeV~VtGSFNnW~~~I-pL~K~~~~s~~~~~~~k~~GvwsltL~--LpPGr-------YEYKFIVD 291 (316)
.|.| .|..+|..+.|+|+||||.+.. .|.+ +-.+..+-|+|.+.++ |..|. -||.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRARE-------GYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhc-------ccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 5667 7888899999999999999874 3432 1233457899999996 88883 46788776
No 44
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=93.26 E-value=0.83 Score=38.64 Aligned_cols=55 Identities=22% Similarity=0.418 Sum_probs=37.5
Q ss_pred EecCCcEEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe----eEEEEEEE
Q 021198 231 YSGDGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG----TYEIKFIV 290 (316)
Q Consensus 231 W~g~AkeV~VtGSF---NnW~~~--IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPG----rYEYKFIV 290 (316)
.-.++++|+|+|+- .+|+.. ++|.... + .........|++.+.|++| ..+|||+.
T Consensus 11 ~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~--y---t~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 11 FADRDTELLVLGSRPELGSWDPQRAVPMRPAR--K---ALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred ecCCCCEEEEEECchhcCCCCccccccccccc--c---cccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 34568999999975 599864 4565320 0 0000134579999999996 79999998
No 45
>PRK03705 glycogen debranching enzyme; Provisional
Probab=92.42 E-value=0.34 Score=51.54 Aligned_cols=65 Identities=26% Similarity=0.446 Sum_probs=46.5
Q ss_pred EEEEEEecC-CcEEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCEe-------
Q 021198 226 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW------- 294 (316)
Q Consensus 226 ~VTFtW~g~-AkeV~VtGSFNnW~--~~IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPGrYEYKFIVDGeW------- 294 (316)
.|+|+..++ |+.|.|.. |+++. ..++|.+ ...|+|++.+. +.+|. .|+|.|+|.|
T Consensus 20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~G~-~Y~yrv~g~~~p~~g~~ 85 (658)
T PRK03705 20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPA------------RSGDIWHGYLPGARPGL-RYGYRVHGPWQPAQGHR 85 (658)
T ss_pred CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeee------------ccCCEEEEEECCCCCCC-EEEEEEccccCcccCcc
Confidence 589966555 99999987 77653 2357764 35799999997 66775 5999999853
Q ss_pred ------eeCCCCCeec
Q 021198 295 ------KVDPQRESVT 304 (316)
Q Consensus 295 ------~~DP~~PtVt 304 (316)
..||-...+.
T Consensus 86 ~~~~~~~~DPYA~~~~ 101 (658)
T PRK03705 86 FNPAKLLIDPCARQVE 101 (658)
T ss_pred cCCCcEecCcCceEEc
Confidence 4677665543
No 46
>PLN02950 4-alpha-glucanotransferase
Probab=92.41 E-value=0.93 Score=50.15 Aligned_cols=70 Identities=20% Similarity=0.378 Sum_probs=51.7
Q ss_pred CeEEEEEEec----CCcEEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--eEEEEEEE--
Q 021198 224 LEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV-- 290 (316)
Q Consensus 224 Lk~VTFtW~g----~AkeV~VtGSF---NnW~~~--IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPG--rYEYKFIV-- 290 (316)
.+.|+|.... .|+.|+|+|+- .+|++. .+|.. .....|++.+.++++ ..+|||++
T Consensus 152 ~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~------------~~~p~W~~~v~lp~~~~~~EYKyv~~~ 219 (909)
T PLN02950 152 EIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY------------TGDSIWEADCLVPKSDFPIKYKYALQT 219 (909)
T ss_pred ceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc------------CCCCcEEEEEEecCCCceEEEEEEEEc
Confidence 3788888644 38999999987 499864 34543 257789999999988 59999998
Q ss_pred -CCE--eeeCCCCCeecC
Q 021198 291 -DGQ--WKVDPQRESVTK 305 (316)
Q Consensus 291 -DGe--W~~DP~~PtVtD 305 (316)
+|. |...++.-...+
T Consensus 220 ~~g~v~WE~g~NR~~~~p 237 (909)
T PLN02950 220 AEGLVSLELGVNRELSLD 237 (909)
T ss_pred CCCceEEeeCCCceeecC
Confidence 443 877776655443
No 47
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=92.32 E-value=0.39 Score=51.31 Aligned_cols=55 Identities=24% Similarity=0.413 Sum_probs=40.9
Q ss_pred EEEEEEecC-CcEEEEEeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCEe
Q 021198 226 VVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 294 (316)
Q Consensus 226 ~VTFtW~g~-AkeV~VtGSFNnW~~----~IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPGrYEYKFIVDGeW 294 (316)
.|+|+..++ |+.|.|. -|++|.. .++|.+ ...|+|.+.+. +.+|.| |+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~g~~-Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPE------------RTDDIWHGYLPGAQPGQL-YGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEeccc------------CCCCEEEEEECCCCCCCE-EEEEEeeee
Confidence 588966655 9999985 6766642 346765 25799999996 777874 999999854
No 48
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=90.34 E-value=0.73 Score=51.99 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=47.4
Q ss_pred EEEEEEecC-CcEEEEEee-eCCCcc---ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-----eEEEEEEECC--
Q 021198 226 VVEIQYSGD-GEIVEVAGS-FNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-----TYEIKFIVDG-- 292 (316)
Q Consensus 226 ~VTFtW~g~-AkeV~VtGS-FNnW~~---~IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPG-----rYEYKFIVDG-- 292 (316)
.++|+..++ |+.|.|.+- +++|.. .++|.+. ..|+|++.+. +.+| -|.|+|.|+|
T Consensus 328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~------------~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~ 395 (1111)
T TIGR02102 328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG------------DRGVWEVQLTKENTGIDSLTGYYYHYEITRGG 395 (1111)
T ss_pred CEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC------------CCCEEEEEECCcccCcccCCCceEEEEEECCC
Confidence 378966555 999999984 456653 4678763 6899999997 5543 4788888876
Q ss_pred --EeeeCCCCCee
Q 021198 293 --QWKVDPQRESV 303 (316)
Q Consensus 293 --eW~~DP~~PtV 303 (316)
....||-...+
T Consensus 396 ~~~~~~DPYA~al 408 (1111)
T TIGR02102 396 DKVLALDPYAKSL 408 (1111)
T ss_pred ceEEEeChhheEE
Confidence 46788866644
No 49
>PLN02950 4-alpha-glucanotransferase
Probab=89.78 E-value=1.9 Score=47.77 Aligned_cols=67 Identities=18% Similarity=0.440 Sum_probs=46.9
Q ss_pred eEEEEEEec---CCcEEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CC
Q 021198 225 EVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 292 (316)
Q Consensus 225 k~VTFtW~g---~AkeV~VtGSF---NnW~~~--IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPG-rYEYKFIV---DG 292 (316)
+.|+|..+. -|++|+|+|+- .+|+.. .+|... +......|++++.|++| ..+|||++ ||
T Consensus 9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~---------~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g 79 (909)
T PLN02950 9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPV---------HQGDELVWEGSVSVPEGFSCEYSYYVVDDNK 79 (909)
T ss_pred EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccc---------cCCCCCeEEEEEEecCCCeEEEEEEEEeCCC
Confidence 567776654 38999999988 489864 566432 01134589999999988 69999995 34
Q ss_pred E---eeeCCCC
Q 021198 293 Q---WKVDPQR 300 (316)
Q Consensus 293 e---W~~DP~~ 300 (316)
. |...++.
T Consensus 80 ~vi~WE~g~NR 90 (909)
T PLN02950 80 NVLRWEAGKKR 90 (909)
T ss_pred ceeeeecCCCe
Confidence 3 7666643
No 50
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=88.29 E-value=2 Score=47.60 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=47.2
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC------CE-
Q 021198 225 EVVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ- 293 (316)
Q Consensus 225 k~VTFtW~g~-AkeV~VtGSFNnW~--~~IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPGrYEYKFIVD------Ge- 293 (316)
..++|+..++ |+.|.|.+.+++|. ..++|.+. ...|+|++.+. ..+|.| |+|.|+ |.
T Consensus 135 ~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-----------~~~GVWsv~v~g~~~G~~-Y~Y~V~v~~p~~G~v 202 (898)
T TIGR02103 135 SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-----------STSGVWSAEGGSSWKGAY-YRYEVTVYHPSTGKV 202 (898)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-----------CCCCEEEEEECcCCCCCE-eEEEEEEecCCCCeE
Confidence 4688966655 99999997776664 23578763 24799999996 556643 667665 54
Q ss_pred ---eeeCCCCCeec
Q 021198 294 ---WKVDPQRESVT 304 (316)
Q Consensus 294 ---W~~DP~~PtVt 304 (316)
+..||-...+.
T Consensus 203 ~~~~v~DPYA~als 216 (898)
T TIGR02103 203 ETYLVTDPYSVSLS 216 (898)
T ss_pred CCeEEeCcCcceEc
Confidence 37888776554
No 51
>PLN03244 alpha-amylase; Provisional
Probab=84.34 E-value=0.92 Score=49.93 Aligned_cols=61 Identities=18% Similarity=0.385 Sum_probs=43.7
Q ss_pred eEEEE-EEecCCcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE--eCCee-------EEEEEEEC
Q 021198 225 EVVEI-QYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGT-------YEIKFIVD 291 (316)
Q Consensus 225 k~VTF-tW~g~AkeV~VtGSFNnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~--LpPGr-------YEYKFIVD 291 (316)
+.++| .|..+|.--.|+|+||||.+.....+. +-.+..+-|+|.+.++ |..|. -||.|.-|
T Consensus 131 ~~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 131 HRVDFMDWAPGARYCAIIGDFNGWSPTENAARE------GHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred cCceeEeecCCcceeeeeccccCCCcccccccc------ccccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 34555 898899999999999999987544442 1123457799999996 88873 36666554
No 52
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=84.16 E-value=5.7 Score=31.42 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=37.6
Q ss_pred eEEEEEEec---CCcEEEEEeeeCC--Ccc-ccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE
Q 021198 225 EVVEIQYSG---DGEIVEVAGSFNG--WHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 290 (316)
Q Consensus 225 k~VTFtW~g---~AkeV~VtGSFNn--W~~-~IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPGrYEYKFIV 290 (316)
.+|+|+... +...|.|.-.-+. |.. .++|.+... +.....|++++.++.|++.|.|.|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~--------~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGS--------DELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeee--------CCceeEEEEEEecCCcEEEEEEEE
Confidence 455565543 3678888755443 222 468876421 112346999999888999999999
No 53
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=82.54 E-value=4.8 Score=46.00 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=42.2
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccc----cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCEe
Q 021198 225 EVVEIQYSGD-GEIVEVAGSFNGWHHR----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 294 (316)
Q Consensus 225 k~VTFtW~g~-AkeV~VtGSFNnW~~~----IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPGrYEYKFIVDGeW 294 (316)
..|+|+...+ ++.|.|. -|+.|... ++|.. +..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 23 ~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~------------~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 23 GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG------------RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC------------CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 4689966555 9999997 89988643 45532 35799999986 88887 6999999854
No 54
>PLN02877 alpha-amylase/limit dextrinase
Probab=72.10 E-value=11 Score=42.35 Aligned_cols=65 Identities=14% Similarity=0.304 Sum_probs=42.0
Q ss_pred eEEEEEEecC-CcEEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC------
Q 021198 225 EVVEIQYSGD-GEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------ 291 (316)
Q Consensus 225 k~VTFtW~g~-AkeV~VtGSFNnW~~~-----IpL~K~~~~s~~~~~~~k~~GvwsltL~-LpPGrYEYKFIVD------ 291 (316)
..++|+..++ |+.|.|.- |++|... ++|. ...|+|++.+. ...| +.|+|.|+
T Consensus 222 ~g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-------------~~~GVWsv~v~~~~~G-~~Y~Y~V~v~~p~~ 286 (970)
T PLN02877 222 DAVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-------------ESNGVWSVEGPKSWEG-CYYVYEVSVYHPST 286 (970)
T ss_pred CCEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-------------CCCCEEEEEeccCCCC-CeeEEEEeecccCC
Confidence 3688966555 99999984 6665322 3453 26899999987 4555 44777775
Q ss_pred CE----eeeCCCCCeec
Q 021198 292 GQ----WKVDPQRESVT 304 (316)
Q Consensus 292 Ge----W~~DP~~PtVt 304 (316)
|. ...||-...+.
T Consensus 287 g~~~~~~v~DPYA~als 303 (970)
T PLN02877 287 GKVETCYANDPYARGLS 303 (970)
T ss_pred CcccccccCCccceEEe
Confidence 32 25677665544
No 55
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.63 E-value=8.3 Score=37.72 Aligned_cols=31 Identities=35% Similarity=0.353 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Q 021198 157 NQLEIDHLKFMLHQKEMELSRLKEQIEKEKL 187 (316)
Q Consensus 157 n~~e~~~lk~~l~~kElel~~~k~el~~~k~ 187 (316)
=..||++||-|||||.-++..--.+|-+.|+
T Consensus 230 lkeeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 230 LKEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 3569999999999998877665555555544
No 56
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=64.93 E-value=12 Score=29.62 Aligned_cols=58 Identities=26% Similarity=0.267 Sum_probs=38.8
Q ss_pred eEEEEEEecC---CcEEEEEeee-CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-C-CEeeeC
Q 021198 225 EVVEIQYSGD---GEIVEVAGSF-NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-D-GQWKVD 297 (316)
Q Consensus 225 k~VTFtW~g~---AkeV~VtGSF-NnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPGrYEYKFIV-D-GeW~~D 297 (316)
-.|.+.+.++ -..|+|.++= ..| .+|.+. -...|.+.-.++.|.+.||+-. | |+|...
T Consensus 14 l~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~------------wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 14 LAVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRS------------WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp EEEEEEECCTTS-EEEEEEEETTSSS----EE-EEE------------CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred EEEEEEEcCCCccEEEEEEEeCCCCCc---eEeecC------------cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 4677778765 3679999444 458 578764 3668988877788899999988 7 887654
No 57
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=62.52 E-value=9.1 Score=41.93 Aligned_cols=42 Identities=24% Similarity=0.508 Sum_probs=30.7
Q ss_pred EEEE-EecCCcEEEEEeeeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEEe
Q 021198 227 VEIQ-YSGDGEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWL 279 (316)
Q Consensus 227 VTFt-W~g~AkeV~VtGSFNnW~~~I-pL~K~~~~s~~~~~~~k~~GvwsltL~L 279 (316)
|+|+ |...++.|.++|+||+|+... .|.. ....|.|++.+.-
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~-----------k~~~g~w~i~l~~ 158 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKP-----------KDDLGVWEIDLPP 158 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCc-----------ccccceeEEecCc
Confidence 7774 555599999999999999752 2331 1368899988873
No 58
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=58.85 E-value=27 Score=28.69 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=40.3
Q ss_pred EEEEEEe-cCCcEEEEE-eeeCCC----c-cccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE--CCE-ee
Q 021198 226 VVEIQYS-GDGEIVEVA-GSFNGW----H-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ-WK 295 (316)
Q Consensus 226 ~VTFtW~-g~AkeV~Vt-GSFNnW----~-~~IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPGrYEYKFIV--DGe-W~ 295 (316)
.|+|+-. ++.+.|.|. |+-..| . ...+|.+.. .+..-..|++++.++..+..|.|.| +|+ |.
T Consensus 24 ~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~--------~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~~ 95 (120)
T PF02903_consen 24 HIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIA--------SDELFDYYEATLKLPEKRLRYYFELEDGGETYY 95 (120)
T ss_dssp EEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEE--------EESSEEEEEEEEE-TTSEEEEEEEEEETTEEEE
T ss_pred EEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEE--------eCCCeEEEEEEEECCCCeEEEEEEEEeCCEEEE
Confidence 4444443 347888886 666655 1 125787641 2234567999999999988888887 344 55
Q ss_pred eCCC
Q 021198 296 VDPQ 299 (316)
Q Consensus 296 ~DP~ 299 (316)
++..
T Consensus 96 y~~~ 99 (120)
T PF02903_consen 96 YGER 99 (120)
T ss_dssp EETT
T ss_pred EeCC
Confidence 5543
No 59
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=56.73 E-value=21 Score=29.51 Aligned_cols=71 Identities=21% Similarity=0.244 Sum_probs=39.0
Q ss_pred EEEEEecC--CcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe--------eEEEEEEECCE--e
Q 021198 227 VEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--------TYEIKFIVDGQ--W 294 (316)
Q Consensus 227 VTFtW~g~--AkeV~VtGSFNnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPG--------rYEYKFIVDGe--W 294 (316)
.++....- .+.|.|.=+||+|.....+.-.+..+.........-..|...+.|++. .+-.+|.|.|. |
T Consensus 23 G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~eyW 102 (113)
T PF03370_consen 23 GTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQEYW 102 (113)
T ss_dssp EEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTEEEE
T ss_pred EEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCCEEe
Confidence 34444433 688999999999976533221110000000111233578888887654 57789999986 5
Q ss_pred eeC
Q 021198 295 KVD 297 (316)
Q Consensus 295 ~~D 297 (316)
-.+
T Consensus 103 DNN 105 (113)
T PF03370_consen 103 DNN 105 (113)
T ss_dssp EST
T ss_pred cCC
Confidence 444
No 60
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=52.16 E-value=44 Score=29.17 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=35.3
Q ss_pred CCCCeEEEEEEecC-CcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEE
Q 021198 221 LSGLEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIK 287 (316)
Q Consensus 221 LsgLk~VTFtW~g~-AkeV~VtGSFNnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPGrYEYK 287 (316)
.+.--+|+|.|... +..|...++..-|... .+.- +.+-.|+.++.- ||.|.|+
T Consensus 58 v~pGDTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~------------~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 58 VKPGDTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKA------------GINESFTHTFET-PGEYTYY 111 (128)
T ss_pred ECCCCEEEEEECCCCCceEEEeCCCCccccc-cccc------------CCCcceEEEecc-cceEEEE
Confidence 33445899999887 9999999888555442 2221 124456666655 9999886
No 61
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=51.70 E-value=33 Score=34.90 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=22.0
Q ss_pred CCCcEEEEEE--eCCeeEEEEEEECCE
Q 021198 269 KSRLWSTVLW--LYPGTYEIKFIVDGQ 293 (316)
Q Consensus 269 ~~GvwsltL~--LpPGrYEYKFIVDGe 293 (316)
.+|+|+..+. .+||.|+.++.+||.
T Consensus 169 ~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 169 GDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred CCceEEEEeeccCCCceEEEEEEEcCc
Confidence 6899998875 689999999999974
No 62
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=49.80 E-value=19 Score=39.14 Aligned_cols=51 Identities=29% Similarity=0.348 Sum_probs=40.9
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHhHhhHhHHhhhhhhhhhhhcccch
Q 021198 161 IDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKD 211 (316)
Q Consensus 161 ~~~lk~~l~~kElel~~~k~el~~~k~~ls~lq~kae~~i~ea~~li~eK~ 211 (316)
|++||+.+-||.+||+++|.+|+.++.++.-|...--.++.--..|+-.+.
T Consensus 116 iEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~ 166 (907)
T KOG2264|consen 116 IEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQI 166 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccC
Confidence 578999999999999999999999988887777666666665666666664
No 63
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.88 E-value=21 Score=37.91 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=21.5
Q ss_pred CCCcEEEEEEeCCe-eEEEEEEECC
Q 021198 269 KSRLWSTVLWLYPG-TYEIKFIVDG 292 (316)
Q Consensus 269 ~~GvwsltL~LpPG-rYEYKFIVDG 292 (316)
.+|.|.+.++++|| .|.|+|.||+
T Consensus 96 ~DG~~~TqCPI~Pg~~~tY~F~v~~ 120 (563)
T KOG1263|consen 96 QDGVYITQCPIQPGENFTYRFTVKD 120 (563)
T ss_pred ccCCccccCCcCCCCeEEEEEEeCC
Confidence 46789999999999 8999999993
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=47.40 E-value=56 Score=35.65 Aligned_cols=31 Identities=32% Similarity=0.536 Sum_probs=25.9
Q ss_pred hhhccHHHHHHHHHHhhHHHHHHhHHHHHHH
Q 021198 153 RRRENQLEIDHLKFMLHQKEMELSRLKEQIE 183 (316)
Q Consensus 153 ~~~~n~~e~~~lk~~l~~kElel~~~k~el~ 183 (316)
.+++=+.|+.+|++-|.+||.++..++.++.
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677899999999999999998888773
No 65
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=46.81 E-value=1.7e+02 Score=28.53 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHhhHhHHhhh----------hhhhhhhhcccc
Q 021198 157 NQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVT----------EINKAEKLISDK 210 (316)
Q Consensus 157 n~~e~~~lk~~l~~kElel~~~k~el~~~k~~ls~lq~kae~----------~i~ea~~li~eK 210 (316)
.+.|++.+|..|..-..++...|.+|++.+..++.++.+.+. +|.+|++.+...
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~ 270 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREEC 270 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555555555555544444443332 777777777643
No 66
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=44.71 E-value=69 Score=31.86 Aligned_cols=21 Identities=0% Similarity=0.189 Sum_probs=11.5
Q ss_pred EEEEEecCCcEEEEEeeeCCC
Q 021198 227 VEIQYSGDGEIVEVAGSFNGW 247 (316)
Q Consensus 227 VTFtW~g~AkeV~VtGSFNnW 247 (316)
.-|....++++......+.--
T Consensus 182 l~~~c~SP~~sLt~sst~~kl 202 (305)
T PF15290_consen 182 LDFSCDSPAKSLTRSSTYTKL 202 (305)
T ss_pred cCCccCCcccccccccccccc
Confidence 334444457777666665433
No 67
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=39.25 E-value=65 Score=34.97 Aligned_cols=72 Identities=31% Similarity=0.357 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHhhHhHHhhhhhhhhhhhcccchHHHH-------------HHhhhCCCCe
Q 021198 159 LEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELI-------------AAEESLSGLE 225 (316)
Q Consensus 159 ~e~~~lk~~l~~kElel~~~k~el~~~k~~ls~lq~kae~~i~ea~~li~eK~~~L~-------------aae~aLsgLk 225 (316)
-+|+-+...|.|||.++.++-.+|+..+.+++-+..+....|+.-.+.+..|...|. .++..|+-|+
T Consensus 278 ~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 278 DDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILK 357 (629)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence 457888999999999999999999999988888888888888777777777764444 4445556666
Q ss_pred EEEEE
Q 021198 226 VVEIQ 230 (316)
Q Consensus 226 ~VTFt 230 (316)
.+-|.
T Consensus 358 ~ief~ 362 (629)
T KOG0963|consen 358 AIEFG 362 (629)
T ss_pred HhhcC
Confidence 67665
No 68
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=39.03 E-value=1.3e+02 Score=22.06 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=28.5
Q ss_pred EEEEEEecCCcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECC
Q 021198 226 VVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDG 292 (316)
Q Consensus 226 ~VTFtW~g~AkeV~VtGSFNnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPGrYEYKFIVDG 292 (316)
.+.+.-...+-.|+|-|.+-| ..|+. ...|++|.|.+++.-+|
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G---~tp~~---------------------~~~l~~G~~~v~v~~~G 45 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIG---TTPLT---------------------LKDLPPGEHTVTVEKPG 45 (71)
T ss_pred EEEEEEECCCCEEEECCEEec---cCcce---------------------eeecCCccEEEEEEECC
Confidence 455666666889999998777 12221 11277888888888887
No 69
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=38.86 E-value=51 Score=26.77 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=25.2
Q ss_pred CCCcEEEEEEeCCeeEEEEEEECCEeeeCCCCCe
Q 021198 269 KSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES 302 (316)
Q Consensus 269 ~~GvwsltL~LpPGrYEYKFIVDGeW~~DP~~Pt 302 (316)
+.|.=++.+.|+||.|....+. |.+.+-|..|.
T Consensus 49 ~~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 49 GKGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 4566678899999999999888 55666666654
No 70
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=38.60 E-value=53 Score=30.13 Aligned_cols=40 Identities=33% Similarity=0.784 Sum_probs=23.4
Q ss_pred CCCccccccCCCCCCCccccccccCCCcEEEEEEe-CCeeEEEEEE--EC--CEeeeC
Q 021198 245 NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWL-YPGTYEIKFI--VD--GQWKVD 297 (316)
Q Consensus 245 NnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~L-pPGrYEYKFI--VD--GeW~~D 297 (316)
..|+. +||... ++..|...+.+ .+|.|+|+.. +| +.|.++
T Consensus 55 ~~w~~-vpM~~~------------gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 55 REWQE-VPMTPL------------GNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp -B-----B-EES------------TS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred Cccee-eccccC------------CCCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 46865 799863 68899999985 7799999976 45 445543
No 71
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=37.16 E-value=73 Score=25.32 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=9.7
Q ss_pred CCcEEEEE-EeCCeeEEE
Q 021198 270 SRLWSTVL-WLYPGTYEI 286 (316)
Q Consensus 270 ~GvwsltL-~LpPGrYEY 286 (316)
...++.++ .+.||.|+|
T Consensus 73 g~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 73 GETATVTFTPLKPGEYEF 90 (104)
T ss_dssp T-EEEEEEEE-S-EEEEE
T ss_pred CCEEEEEEcCCCCEEEEE
Confidence 34456665 689999877
No 72
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=36.25 E-value=52 Score=32.15 Aligned_cols=70 Identities=20% Similarity=0.248 Sum_probs=44.7
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHhHhhHhHHhhhhhhhhhhhcccc---hHHHHHHhhhCCCCeEEEEEEe
Q 021198 163 HLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDK---DEELIAAEESLSGLEVVEIQYS 232 (316)
Q Consensus 163 ~lk~~l~~kElel~~~k~el~~~k~~ls~lq~kae~~i~ea~~li~eK---~~~L~aae~aLsgLk~VTFtW~ 232 (316)
.+..-|...+.+|-..+.+|.+.+..|+.|+...+..+.+.+.+-.+- ..+|+.|+.-+++|..=..+|.
T Consensus 225 ~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~ 297 (344)
T PF12777_consen 225 EAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWS 297 (344)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHH
Confidence 333344555555556666666666777777777777666666665543 3778888887777765555564
No 73
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=35.68 E-value=1.2e+02 Score=25.76 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=11.1
Q ss_pred eEEEEEEecCCcEEEE
Q 021198 225 EVVEIQYSGDGEIVEV 240 (316)
Q Consensus 225 k~VTFtW~g~AkeV~V 240 (316)
-+|+|.|...+..|..
T Consensus 23 dTV~f~n~d~~Hnv~~ 38 (116)
T TIGR02375 23 DTVTFVPTDKGHNVET 38 (116)
T ss_pred CEEEEEECCCCeeEEE
Confidence 3688888776666554
No 74
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=33.34 E-value=42 Score=24.10 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=14.6
Q ss_pred EEE-EEeCCeeEEEEEEE---CCEeeeCC
Q 021198 274 STV-LWLYPGTYEIKFIV---DGQWKVDP 298 (316)
Q Consensus 274 slt-L~LpPGrYEYKFIV---DGeW~~DP 298 (316)
++. ..|+||.|.++-.+ +|.|..++
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCccc
Confidence 344 45999999998876 47887765
No 75
>PRK10785 maltodextrin glucosidase; Provisional
Probab=33.03 E-value=1.5e+02 Score=31.31 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=38.3
Q ss_pred eEEEEEEecC--CcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeC--CeeEEEEEEE--CCE
Q 021198 225 EVVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY--PGTYEIKFIV--DGQ 293 (316)
Q Consensus 225 k~VTFtW~g~--AkeV~VtGSFNnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~Lp--PGrYEYKFIV--DGe 293 (316)
..++++-..+ ...|.|.-.+++-....+|.+... +.....|++++.++ ++++.|.|.+ +|.
T Consensus 21 ~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~--------~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 21 LLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRS--------QPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred EEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeec--------CCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 4445544432 568888665565544568876421 11234699999885 7888888888 554
No 76
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.41 E-value=3.5e+02 Score=27.83 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=19.8
Q ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHhHhhHhHH
Q 021198 160 EIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTK 195 (316)
Q Consensus 160 e~~~lk~~l~~kElel~~~k~el~~~k~~ls~lq~k 195 (316)
+++.|+..+.+-+.++.++..++...+..+..|+..
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 107 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDI 107 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666655555555555555555555444443
No 77
>PRK11637 AmiB activator; Provisional
Probab=32.34 E-value=1.3e+02 Score=30.00 Aligned_cols=10 Identities=30% Similarity=0.288 Sum_probs=3.9
Q ss_pred hhhhhhhhcc
Q 021198 199 EINKAEKLIS 208 (316)
Q Consensus 199 ~i~ea~~li~ 208 (316)
+|.+++.-|.
T Consensus 111 eI~~~q~~l~ 120 (428)
T PRK11637 111 SIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHH
Confidence 3333443333
No 78
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=31.19 E-value=16 Score=38.31 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHhHhhHhHHhhhhhhhhhhhcc--cch-HHHHHHhhhC
Q 021198 162 DHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLIS--DKD-EELIAAEESL 221 (316)
Q Consensus 162 ~~lk~~l~~kElel~~~k~el~~~k~~ls~lq~kae~~i~ea~~li~--eK~-~~L~aae~aL 221 (316)
++|+++...||....-...-|--++-+|..=+.+|.+.|...+++|. ||+ +.|++|...|
T Consensus 422 ~RLr~QQ~eKd~qmksII~RL~~vEeELrre~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl 484 (495)
T PF12004_consen 422 ERLRRQQEEKDSQMKSIISRLMAVEEELRREHAEMQAVLDHKQRIIDAQEKRIAALDAANSRL 484 (495)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHhhhhHHHHHHHHhhhhhhhhhhhhhHHHHhcccccchHHHHHhhhhccccccccccc
Confidence 67888888887654433333333444444445566667777777777 555 7888888774
No 79
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=29.88 E-value=1.3e+02 Score=25.62 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=42.4
Q ss_pred cccccchHHhhhccHHHHHHHHHHhhH-------------HHHHHhHHHHHHHHHHHhHhhHhHHhh-hhhhhhhhhccc
Q 021198 144 GADFDSSEARRRENQLEIDHLKFMLHQ-------------KEMELSRLKEQIEKEKLALSVLQTKAV-TEINKAEKLISD 209 (316)
Q Consensus 144 d~~~dl~ea~~~~n~~e~~~lk~~l~~-------------kElel~~~k~el~~~k~~ls~lq~kae-~~i~ea~~li~e 209 (316)
.+.+.+.-|-+++|+-.|+-|..-|.. ...++...+.+|++-+.+|.-.+.+-. .+|.+.++.|.+
T Consensus 28 ~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~~KL~e 107 (115)
T PF06476_consen 28 AIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDSDKIAKRQKKLAE 107 (115)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 478888899999999999888776542 333444444555555555544333211 255555555555
Q ss_pred chHHHH
Q 021198 210 KDEELI 215 (316)
Q Consensus 210 K~~~L~ 215 (316)
.+.+|.
T Consensus 108 a~~eL~ 113 (115)
T PF06476_consen 108 AKAELK 113 (115)
T ss_pred HHHHHh
Confidence 555544
No 80
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=29.32 E-value=73 Score=23.95 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=26.9
Q ss_pred HhHhhHhHHhhhhhhhhhhhcccch-HHHHHHhh
Q 021198 187 LALSVLQTKAVTEINKAEKLISDKD-EELIAAEE 219 (316)
Q Consensus 187 ~~ls~lq~kae~~i~ea~~li~eK~-~~L~aae~ 219 (316)
.-|+.|-.-||.+|.+-++.-..|+ |=|+|++.
T Consensus 15 ~rl~~LD~~ME~Eieelr~RY~~KRqPIldAiea 48 (49)
T PF11629_consen 15 QRLASLDPEMEQEIEELRQRYQAKRQPILDAIEA 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhhccHHHHHhc
Confidence 3477888999999999999999997 66776654
No 81
>PRK11637 AmiB activator; Provisional
Probab=28.22 E-value=1.5e+02 Score=29.63 Aligned_cols=27 Identities=7% Similarity=0.171 Sum_probs=10.1
Q ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 021198 160 EIDHLKFMLHQKEMELSRLKEQIEKEK 186 (316)
Q Consensus 160 e~~~lk~~l~~kElel~~~k~el~~~k 186 (316)
+++.+...+..-+.++.....+|...+
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~ 102 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLN 102 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443333333333333333333333
No 82
>PRK14145 heat shock protein GrpE; Provisional
Probab=28.07 E-value=1.9e+02 Score=27.00 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHhhHhHHhhhhhhhhhhhcccch-----HHHHHHhhhCCC
Q 021198 157 NQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKD-----EELIAAEESLSG 223 (316)
Q Consensus 157 n~~e~~~lk~~l~~kElel~~~k~el~~~k~~ls~lq~kae~~i~ea~~li~eK~-----~~L~aae~aLsg 223 (316)
...++..|+..+...+-++-.++..+.+..+...-.+.+++.++.++.+...++- |-+|.-+.+|..
T Consensus 43 ~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~ 114 (196)
T PRK14145 43 TVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALAS 114 (196)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhc
Confidence 4556677777777777777788888888888888888888888888888777773 667777777643
No 83
>PF04985 Phage_tube: Phage tail tube protein FII; InterPro: IPR006498 This entry is represented by Bacteriophage P2, FII, the major tail tube protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tails of some phage are contractile. These sequences represent the tail tube, or tail core, protein of the contractile tail of phage P2, and homologous proteins from other phage.
Probab=26.25 E-value=2.7e+02 Score=24.24 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=38.6
Q ss_pred eEEEEEEecC---------CcEEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCE--
Q 021198 225 EVVEIQYSGD---------GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQ-- 293 (316)
Q Consensus 225 k~VTFtW~g~---------AkeV~VtGSFNnW~~~IpL~K~~~~s~~~~~~~k~~GvwsltL~LpPGrYEYKFIVDGe-- 293 (316)
..+.|++.+. +-.+.+.|.+..|... .+++ .+....+..+ ..+.||+.+||+
T Consensus 78 ~~~~~~~~~a~~~~dg~~~~~~~~~~G~~~~~~~g-~~k~------------g~~~~~~~~~----~v~yyk~~idG~~~ 140 (167)
T PF04985_consen 78 KGVRFTFRGAYQDDDGETIPVVAVIRGRIKSVDPG-EWKP------------GEKTETSIEF----SVTYYKLEIDGKEI 140 (167)
T ss_pred ccEEEEEEEEEEEcCCcEEEEEEEEEEEEEeeCCc-ccCc------------CccccceEEE----EEEEEEEEECCEEE
Confidence 4566666542 2346777888877653 2322 1222333333 267999999997
Q ss_pred eeeCCCCCeec
Q 021198 294 WKVDPQRESVT 304 (316)
Q Consensus 294 W~~DP~~PtVt 304 (316)
+..|..+....
T Consensus 141 ~eiD~~n~i~~ 151 (167)
T PF04985_consen 141 IEIDKLNNIYR 151 (167)
T ss_pred EEEECccCEEE
Confidence 88898887655
No 84
>PF07898 DUF1676: Protein of unknown function (DUF1676); InterPro: IPR012464 This family contains sequences derived from proteins of unknown function expressed by Drosophila melanogaster and Anopheles gambiae.
Probab=25.92 E-value=72 Score=25.39 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=33.6
Q ss_pred eeeeeecceeeeeCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHhhhhcCCcc
Q 021198 31 ENISLSTDVSFVKNPSKGSCIKTDLHSDIYSLPPTESLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLD 104 (316)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (316)
.+|.+.-+|++|++|+...-.. .+.....++... ++..-...|-+|+.+|++.-.|-
T Consensus 13 d~i~l~dgv~lvr~~~~~~~~~----------~~~~~~~~~~~~-------~~~~l~~~l~~k~~~fl~th~L~ 69 (106)
T PF07898_consen 13 DSIKLTDGVSLVRNPEAAERSS----------EAESRSVDEEDS-------REEELDNLLLDKVERFLQTHSLR 69 (106)
T ss_pred CCEEecCCEEEEECCCCccccc----------cccccccccccc-------hhhHHHHHHHHHHHHHHHhceEE
Confidence 4689999999999997532100 000000111111 33444557889999999987653
No 85
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=25.40 E-value=1.9e+02 Score=22.22 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=11.1
Q ss_pred EEEEEEecC-CcEEEE-EeeeCC
Q 021198 226 VVEIQYSGD-GEIVEV-AGSFNG 246 (316)
Q Consensus 226 ~VTFtW~g~-AkeV~V-tGSFNn 246 (316)
+|+|.+... +..|.. .|.+.+
T Consensus 20 tVt~~N~d~~~Hnv~~~~g~~~~ 42 (83)
T TIGR02657 20 TVTWINREAMPHNVHFVAGVLGE 42 (83)
T ss_pred EEEEEECCCCCccEEecCCCCcc
Confidence 566666544 566653 344433
No 86
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=25.38 E-value=2.2e+02 Score=24.19 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=10.1
Q ss_pred CCcEEEEEEeCCeeEEEE
Q 021198 270 SRLWSTVLWLYPGTYEIK 287 (316)
Q Consensus 270 ~GvwsltL~LpPGrYEYK 287 (316)
...|+.++. .||.|.|.
T Consensus 83 G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 83 GTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred CCEEEEEec-CCcEEEEE
Confidence 345666663 56777664
No 87
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.59 E-value=27 Score=31.74 Aligned_cols=48 Identities=33% Similarity=0.426 Sum_probs=17.7
Q ss_pred cccccccchHHhhhccHHHHHHHHHHhhHHH---HHHhHHHHHHHHHHHhHhhHhHH
Q 021198 142 VEGADFDSSEARRRENQLEIDHLKFMLHQKE---MELSRLKEQIEKEKLALSVLQTK 195 (316)
Q Consensus 142 ~~d~~~dl~ea~~~~n~~e~~~lk~~l~~kE---lel~~~k~el~~~k~~ls~lq~k 195 (316)
|+|++.+|-.|-.+ | .+|..=|-.|| -+.-|+|.|+...|.+| ++|.|
T Consensus 2 LeD~EsklN~AIER-n----alLE~ELdEKE~L~~~~QRLkDE~RDLKqEl-~V~ek 52 (166)
T PF04880_consen 2 LEDFESKLNQAIER-N----ALLESELDEKENLREEVQRLKDELRDLKQEL-IVQEK 52 (166)
T ss_dssp HHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHCH--------------------
T ss_pred HHHHHHHHHHHHHH-h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 45777788666666 5 66666665555 24567888888888888 55443
No 88
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=23.52 E-value=43 Score=27.91 Aligned_cols=19 Identities=21% Similarity=0.651 Sum_probs=14.5
Q ss_pred CeeEEEEEEECCEeeeCCCC
Q 021198 281 PGTYEIKFIVDGQWKVDPQR 300 (316)
Q Consensus 281 PGrYEYKFIVDGeW~~DP~~ 300 (316)
-|-|+|.|. ||.|++.-+.
T Consensus 66 ~G~~hf~~~-~~~W~~~r~g 84 (105)
T cd00503 66 VGGYHFDYK-NGKWICTRSG 84 (105)
T ss_pred CCCccceec-CCEEEECCCC
Confidence 377888884 9999988543
No 89
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=23.06 E-value=1.9e+02 Score=28.45 Aligned_cols=13 Identities=38% Similarity=0.422 Sum_probs=8.4
Q ss_pred hhhhhhhhcccch
Q 021198 199 EINKAEKLISDKD 211 (316)
Q Consensus 199 ~i~ea~~li~eK~ 211 (316)
+|.+|++.+.+.+
T Consensus 254 ~I~~ae~~~~~~r 266 (312)
T smart00787 254 EIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHhcC
Confidence 6777777666553
No 90
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=23.04 E-value=1.3e+02 Score=22.23 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=18.4
Q ss_pred cCCCcEEEEEEeCCeeEEEEEEECCE
Q 021198 268 RKSRLWSTVLWLYPGTYEIKFIVDGQ 293 (316)
Q Consensus 268 k~~GvwsltL~LpPGrYEYKFIVDGe 293 (316)
...|.|... .|+||.|.+++.-.|-
T Consensus 35 d~~G~f~~~-~l~~g~Y~l~v~~~g~ 59 (82)
T PF13620_consen 35 DSDGRFSFE-GLPPGTYTLRVSAPGY 59 (82)
T ss_dssp -TTSEEEEE-EE-SEEEEEEEEBTTE
T ss_pred CCCceEEEE-ccCCEeEEEEEEECCc
Confidence 468888766 5677999999887775
No 91
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.68 E-value=1.9e+02 Score=34.01 Aligned_cols=68 Identities=25% Similarity=0.316 Sum_probs=52.5
Q ss_pred hccHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHhhHhHHhhhhhhhhhhhcccchHHHHHHhhhCC
Q 021198 155 RENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLS 222 (316)
Q Consensus 155 ~~n~~e~~~lk~~l~~kElel~~~k~el~~~k~~ls~lq~kae~~i~ea~~li~eK~~~L~aae~aLs 222 (316)
++.+.||.-|+.++.+.+.++..-+..+.+.-..++.=..+.+.++.+...-+.+.+.++++|++.|.
T Consensus 443 ~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~ 510 (1293)
T KOG0996|consen 443 QKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELD 510 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888888888888777777777777777777777888777777777777777777654
No 92
>PF04484 DUF566: Family of unknown function (DUF566) ; InterPro: IPR007573 This is a family of related proteins that is plant specific.
Probab=22.02 E-value=1.7e+02 Score=28.91 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=44.8
Q ss_pred ccccchHHhhhccHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHhhHhHHhhh-------hhhhhhhhcccchHHHHHH
Q 021198 145 ADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVT-------EINKAEKLISDKDEELIAA 217 (316)
Q Consensus 145 ~~~dl~ea~~~~n~~e~~~lk~~l~~kElel~~~k~el~~~k~~ls~lq~kae~-------~i~ea~~li~eK~~~L~aa 217 (316)
+..|.....+..++.|-.|.-+|||-+-|. -+=.=+++++++++....+|. .|.+-++.+..|+-+|+..
T Consensus 130 ~~~d~~rgkk~~~~~Ed~H~LRLLhNR~LQ---WRFaNArAeaa~~~q~~~aE~~L~~~w~~is~Lr~sV~~KRi~lq~~ 206 (311)
T PF04484_consen 130 FAADVRRGKKGASQIEDAHQLRLLHNRLLQ---WRFANARAEAALSAQKANAEKKLYNAWLRISELRDSVAMKRIELQRL 206 (311)
T ss_pred ccccccccccCcchhHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444556777889999999976653 232233455555555555554 5666677777777666665
Q ss_pred hhh
Q 021198 218 EES 220 (316)
Q Consensus 218 e~a 220 (316)
+..
T Consensus 207 kq~ 209 (311)
T PF04484_consen 207 KQE 209 (311)
T ss_pred HHH
Confidence 554
No 93
>PRK10093 primosomal replication protein N''; Provisional
Probab=22.00 E-value=92 Score=28.64 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=45.0
Q ss_pred cCCccccCCCCCCCcccC-Ccc-cccccchHHhhhccHHHHHHHHHHhhHHHHHHhHHHH--HHHHHHHhHhhHhHHhhh
Q 021198 123 IASFATVNHPLSEDHLGT-GVE-GADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKE--QIEKEKLALSVLQTKAVT 198 (316)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~-~~~-d~~~dl~ea~~~~n~~e~~~lk~~l~~kElel~~~k~--el~~~k~~ls~lq~kae~ 198 (316)
-..-+...+|+|..+++. ++. +..+. . ++ -+|| ++|..|...+|+.+.++-. +=.+..-+|.+++++...
T Consensus 81 ALqRElatq~lR~~e~~~~~~~~~~~~~-l---qH-Qd~E-RRL~~Mv~dre~~L~~a~~~~~qq~lq~el~alegRL~R 154 (171)
T PRK10093 81 AIAREAAAWSLREWDSAPPGLARWQRKR-I---QH-QEFE-RRLLEMVAERRARLARATDLVEQQTLHREVEAYEGRLAR 154 (171)
T ss_pred HHHHHHHhhHHhhcCCCCCchhHHHHHH-H---Hh-HHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345567789999888643 222 22222 2 55 5677 8899999999999997665 223344556666665544
No 94
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=22.00 E-value=1.3e+02 Score=21.77 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=17.9
Q ss_pred CCCcEEEEEEeCCeeEEEEEEE--CCE
Q 021198 269 KSRLWSTVLWLYPGTYEIKFIV--DGQ 293 (316)
Q Consensus 269 ~~GvwsltL~LpPGrYEYKFIV--DGe 293 (316)
.+|.|... .|+||.|..+.+. +|-
T Consensus 25 ~~G~~~f~-~L~~G~Y~l~E~~aP~GY 50 (70)
T PF05738_consen 25 ENGKYTFK-NLPPGTYTLKETKAPDGY 50 (70)
T ss_dssp TTSEEEEE-EEESEEEEEEEEETTTTE
T ss_pred CCCEEEEe-ecCCeEEEEEEEECCCCC
Confidence 56665443 6899999999998 563
No 95
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=21.82 E-value=2.8e+02 Score=26.04 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=16.9
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHhHhhHhHH
Q 021198 161 IDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTK 195 (316)
Q Consensus 161 ~~~lk~~l~~kElel~~~k~el~~~k~~ls~lq~k 195 (316)
|..++........++..+|.|+.+.+..++.|++.
T Consensus 197 ~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~e 231 (312)
T PF00038_consen 197 LEELRQQSEKSSEELESAKEELKELRRQIQSLQAE 231 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhHhHHHHHHhhhhHhhhh
Confidence 33444444444445555555555555555444433
No 96
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=21.80 E-value=3.3e+02 Score=28.42 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHhhHhHHhhhhh
Q 021198 159 LEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEI 200 (316)
Q Consensus 159 ~e~~~lk~~l~~kElel~~~k~el~~~k~~ls~lq~kae~~i 200 (316)
.|.+..|.+......+..++|.+++.+|+.+..++.+....+
T Consensus 379 ~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ 420 (522)
T PF05701_consen 379 SEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAAL 420 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777888888888999999999999999998887776643
No 97
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=21.67 E-value=1.3e+02 Score=25.00 Aligned_cols=32 Identities=34% Similarity=0.416 Sum_probs=24.2
Q ss_pred CCCcEEEEE-EeCCeeEEEEEEEC--CEeeeCCCC
Q 021198 269 KSRLWSTVL-WLYPGTYEIKFIVD--GQWKVDPQR 300 (316)
Q Consensus 269 ~~GvwsltL-~LpPGrYEYKFIVD--GeW~~DP~~ 300 (316)
..+.-++++ .||||.|-...+-| |....|-+.
T Consensus 39 ~~~~~~~~f~~lp~G~YAi~v~hD~N~NgklD~n~ 73 (112)
T PF09912_consen 39 KGGTVTITFEDLPPGTYAIAVFHDENGNGKLDTNF 73 (112)
T ss_pred CCCcEEEEECCCCCccEEEEEEEeCCCCCcCCcCC
Confidence 357777887 69999999999998 445555544
No 98
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=21.37 E-value=5.2e+02 Score=22.08 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=17.6
Q ss_pred EeCCeeEEEEEEEC---CEeeeCCCC
Q 021198 278 WLYPGTYEIKFIVD---GQWKVDPQR 300 (316)
Q Consensus 278 ~LpPGrYEYKFIVD---GeW~~DP~~ 300 (316)
.|+||.|.++..+- +.|....+-
T Consensus 102 ~lk~G~Y~l~~~~~~~~~~W~f~k~F 127 (140)
T PF11797_consen 102 KLKPGKYTLKITAKSGKKTWTFTKDF 127 (140)
T ss_pred CccCCEEEEEEEEEcCCcEEEEEEEE
Confidence 48999999998884 568876543
No 99
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=21.23 E-value=2.6e+02 Score=26.51 Aligned_cols=65 Identities=20% Similarity=0.212 Sum_probs=48.1
Q ss_pred cccchHHhhhccH----HHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHhhHhHHhhhhhhhhhhhcccc
Q 021198 146 DFDSSEARRRENQ----LEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDK 210 (316)
Q Consensus 146 ~~dl~ea~~~~n~----~e~~~lk~~l~~kElel~~~k~el~~~k~~ls~lq~kae~~i~ea~~li~eK 210 (316)
...++-|+++=|+ .+|+.||......|.++..++.++...|.+......+-..---+-+.||.-|
T Consensus 15 q~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK 83 (207)
T PF05546_consen 15 QETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRK 83 (207)
T ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344445444444 5899999999999999999999999999888776655555555566666666
No 100
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=21.11 E-value=4.2e+02 Score=24.85 Aligned_cols=9 Identities=33% Similarity=0.294 Sum_probs=3.4
Q ss_pred EEEEEecCC
Q 021198 227 VEIQYSGDG 235 (316)
Q Consensus 227 VTFtW~g~A 235 (316)
.+++=|.+|
T Consensus 205 ~~I~AP~~G 213 (334)
T TIGR00998 205 TVIRAPFDG 213 (334)
T ss_pred cEEEcCCCc
Confidence 334333333
No 101
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=20.84 E-value=73 Score=34.10 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=22.9
Q ss_pred CCCcEEEEEEeCCe-eEEEEEEE-C--CE-eeeCCCC
Q 021198 269 KSRLWSTVLWLYPG-TYEIKFIV-D--GQ-WKVDPQR 300 (316)
Q Consensus 269 ~~GvwsltL~LpPG-rYEYKFIV-D--Ge-W~~DP~~ 300 (316)
.+|+..+.+.++|| .|.|+|.+ | |. |-+....
T Consensus 97 ~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~ 133 (596)
T PLN00044 97 QDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTA 133 (596)
T ss_pred ccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccch
Confidence 34554467889999 89999999 4 65 7666544
No 102
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=20.84 E-value=3.8e+02 Score=23.08 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=24.6
Q ss_pred ccHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 021198 156 ENQLEIDHLKFMLHQKEMELSRLKEQIEKEK 186 (316)
Q Consensus 156 ~n~~e~~~lk~~l~~kElel~~~k~el~~~k 186 (316)
-|-..+.+|...++++|-|+..+|.+++...
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~ 43 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLE 43 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888999999999988888876644
No 103
>PRK14162 heat shock protein GrpE; Provisional
Probab=20.82 E-value=2.9e+02 Score=25.69 Aligned_cols=66 Identities=14% Similarity=0.140 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHhhHhHHhhhhhhhhhhhcccch-----HHHHHHhhhCC
Q 021198 157 NQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKD-----EELIAAEESLS 222 (316)
Q Consensus 157 n~~e~~~lk~~l~~kElel~~~k~el~~~k~~ls~lq~kae~~i~ea~~li~eK~-----~~L~aae~aLs 222 (316)
.+.|+..|+..+...+-++..++..+....+...-.+.+++.++.++.+-..++- +-+|.-+.||.
T Consensus 37 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~ 107 (194)
T PRK14162 37 KQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERALA 107 (194)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHh
Confidence 4556667776676677777778888888888888899999999888888777663 66666666664
No 104
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.70 E-value=2.7e+02 Score=30.55 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHhhHh------HHhhhhhhhhhhhcccchHHHHHHh
Q 021198 158 QLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQ------TKAVTEINKAEKLISDKDEELIAAE 218 (316)
Q Consensus 158 ~~e~~~lk~~l~~kElel~~~k~el~~~k~~ls~lq------~kae~~i~ea~~li~eK~~~L~aae 218 (316)
+.|+.+|++.+-+...++.+++++|+..+..+-.-. .-.+..|....+.|++|..+.+.-+
T Consensus 435 ~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 435 EEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688888888888888888888887775554211 1123366666777776654444333
No 105
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=20.61 E-value=2.3e+02 Score=22.97 Aligned_cols=57 Identities=21% Similarity=0.381 Sum_probs=41.3
Q ss_pred HHHHHHhhH--HHHHHhHHHHHHHHHHHhHhhHhHHhhhhhhhhhhhcccch--HHHHHHh
Q 021198 162 DHLKFMLHQ--KEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKD--EELIAAE 218 (316)
Q Consensus 162 ~~lk~~l~~--kElel~~~k~el~~~k~~ls~lq~kae~~i~ea~~li~eK~--~~L~aae 218 (316)
+++..|-.. .|-.+-+...-|.+++.+|-..+.+...++.+-..++.+.. ..+..|+
T Consensus 28 ~rle~~k~~~~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~~ee~~~ak 88 (90)
T PF02970_consen 28 ARLEKMKAEGEDEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEEEGLEELEEAK 88 (90)
T ss_dssp HHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCcCchhHHHHh
Confidence 444444444 67777888888999999999999999999888888876442 4444443
No 106
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=20.51 E-value=1.7e+02 Score=27.53 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=26.5
Q ss_pred hhccHHHHHHHHHHhhHHHHHHhHHHHHHHH
Q 021198 154 RRENQLEIDHLKFMLHQKEMELSRLKEQIEK 184 (316)
Q Consensus 154 ~~~n~~e~~~lk~~l~~kElel~~~k~el~~ 184 (316)
.++.+||.-+||+.|+.=|-.+.++..+.+.
T Consensus 91 ~~~~dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 91 TEGTDWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999888888877665
No 107
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.50 E-value=3.4e+02 Score=19.60 Aligned_cols=40 Identities=25% Similarity=0.257 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHhhHhHHhh
Q 021198 158 QLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAV 197 (316)
Q Consensus 158 ~~e~~~lk~~l~~kElel~~~k~el~~~k~~ls~lq~kae 197 (316)
+.+++.||..-..=-.+..+++.|.+..++++..|..++.
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456677776666666677778888888888887777654
No 108
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=20.27 E-value=1.8e+02 Score=23.82 Aligned_cols=42 Identities=26% Similarity=0.397 Sum_probs=28.0
Q ss_pred hHHHHHHhHHHHHHHHHHHhHhhHhHHhhh-------hhhhhhhhcccc
Q 021198 169 HQKEMELSRLKEQIEKEKLALSVLQTKAVT-------EINKAEKLISDK 210 (316)
Q Consensus 169 ~~kElel~~~k~el~~~k~~ls~lq~kae~-------~i~ea~~li~eK 210 (316)
..-|.|..||...|++.+.+|..|..+++. +|-++|.++.+=
T Consensus 31 ~~~~~E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D 79 (123)
T PF05524_consen 31 DDIEAEIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLED 79 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcC
Confidence 455667777777777777777777766433 677777776643
Done!