Query 021200
Match_columns 316
No_of_seqs 253 out of 1567
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 14:12:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zbt_A RF-1, peptide chain rel 100.0 6E-105 2E-109 771.9 33.5 312 1-313 59-370 (371)
2 3d5a_X RF1, peptide chain rele 100.0 3E-104 1E-108 763.8 33.6 307 2-313 46-352 (354)
3 2b3t_B RF-1, peptide chain rel 100.0 8E-104 3E-108 762.1 15.5 308 2-314 50-358 (360)
4 1rq0_A RF-1, peptide chain rel 100.0 3.2E-99 1E-103 725.5 25.6 297 6-314 38-334 (342)
5 1gqe_A Release factor 2, RF2; 100.0 3.3E-98 1E-102 724.7 31.4 296 1-303 67-363 (365)
6 2ihr_1 Peptide chain release f 100.0 1.7E-95 6E-100 705.3 25.6 289 2-304 60-352 (365)
7 2rsm_A Probable peptide chain 100.0 4.2E-39 1.4E-43 265.2 7.8 98 138-238 11-109 (115)
8 1j26_A Immature colon carcinom 99.9 8E-27 2.8E-31 192.7 9.6 71 167-237 12-107 (112)
9 2jva_A Peptidyl-tRNA hydrolase 99.9 1.1E-26 3.6E-31 190.8 8.7 69 169-237 7-99 (108)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.9 8.9E-25 3E-29 186.9 7.3 70 169-238 7-100 (140)
11 2a26_A Calcyclin-binding prote 73.8 16 0.00055 25.4 7.2 42 7-49 6-47 (50)
12 1ysm_A Calcyclin-binding prote 48.2 44 0.0015 25.2 6.0 41 7-48 5-45 (77)
13 2rbd_A BH2358 protein; putativ 44.4 1.3E+02 0.0045 24.8 9.2 55 2-57 21-75 (171)
14 2axy_A Poly(RC)-binding protei 41.6 12 0.00041 27.2 1.9 46 186-234 21-71 (73)
15 2ctk_A Vigilin; K homology typ 41.5 39 0.0013 26.3 5.0 51 186-239 33-88 (104)
16 2lw1_A ABC transporter ATP-bin 41.2 1.1E+02 0.0038 22.9 8.1 47 6-52 30-79 (89)
17 2ctl_A Vigilin; K homology typ 40.2 29 0.00098 26.7 4.0 50 185-237 32-89 (97)
18 2ctf_A Vigilin; K homology typ 39.2 32 0.0011 26.8 4.1 48 186-237 43-94 (102)
19 1g6u_A Domain swapped dimer; d 33.2 1.1E+02 0.0037 20.5 6.4 36 17-53 9-44 (48)
20 1vig_A Vigilin; RNA-binding pr 31.0 33 0.0011 24.6 2.8 44 185-231 20-68 (71)
21 1ec6_A RNA-binding protein NOV 27.9 70 0.0024 23.6 4.3 49 186-237 19-77 (87)
22 3qne_A Seryl-tRNA synthetase, 27.7 2.4E+02 0.0083 27.9 9.3 23 34-56 83-105 (485)
23 2ctm_A Vigilin; K homology typ 27.5 59 0.002 24.8 3.9 49 186-237 33-87 (95)
24 2cte_A Vigilin; K homology typ 26.3 38 0.0013 25.7 2.5 46 186-235 33-84 (94)
25 3qne_A Seryl-tRNA synthetase, 25.3 1.3E+02 0.0043 30.0 6.7 47 76-122 308-354 (485)
26 2dq0_A Seryl-tRNA synthetase; 24.3 3.2E+02 0.011 26.5 9.4 69 1-69 34-126 (455)
27 3krm_A Insulin-like growth fac 23.8 26 0.0009 28.7 1.2 50 186-238 101-159 (163)
28 2zvf_A Alanyl-tRNA synthetase; 23.7 2.9E+02 0.01 22.4 10.0 53 2-54 4-57 (171)
29 3lay_A Zinc resistance-associa 22.3 3.7E+02 0.013 22.9 8.5 44 13-56 97-140 (175)
30 2ctj_A Vigilin; K homology typ 21.6 63 0.0022 24.8 3.0 48 185-235 32-85 (95)
31 1vcs_A Vesicle transport throu 21.5 2.8E+02 0.0096 21.3 7.2 54 6-59 39-97 (102)
32 1dtj_A RNA-binding neurooncolo 20.9 42 0.0014 24.0 1.7 45 186-233 19-73 (76)
33 3lss_A Seryl-tRNA synthetase; 20.8 2.9E+02 0.0099 27.4 8.3 67 1-67 40-151 (484)
34 2p2r_A Poly(RC)-binding protei 20.1 44 0.0015 24.0 1.7 46 186-234 21-73 (76)
No 1
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=100.00 E-value=6.3e-105 Score=771.86 Aligned_cols=312 Identities=41% Similarity=0.726 Sum_probs=285.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccCCeeEEEEcCCCcHHH
Q 021200 1 MHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 80 (316)
Q Consensus 1 ~~~~~~~~~~~~el~el~~l~~e~~~D~em~e~a~eE~~~l~~~l~~le~~l~~~llp~~~~d~~~~~leI~aG~Gg~Ea 80 (316)
++.|++|++..+++.++.+|+.+.++|+||+++|++|+..++++++.++.+|...|||++|+|.++|+|||+||+||+||
T Consensus 59 v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a~~e~~~l~~~l~~le~~l~~lLlp~~~~D~~naileI~aGaGG~EA 138 (371)
T 1zbt_A 59 VAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAGGDEA 138 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCTTTTSCEEEEEEECTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceEEEEEcCCCcHHH
Confidence 35789999999999999999864345999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccceeeecceeEEEEeccccCCCCeeeceeEEE
Q 021200 81 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVA 160 (316)
Q Consensus 81 ~~~~~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~G~~ay~~l~~E~GvHrv~rvp~~~~~gR~hts~~~V~ 160 (316)
++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++|||+|++|+|||||||||+|+++||+|||||+|+
T Consensus 139 ~~fa~~L~rMY~r~Ae~~g~kvevl~~~~~~~gG~ksv~~~I~G~~ayg~Lk~EsGvHRvqRvp~tes~gR~hTS~asV~ 218 (371)
T 1zbt_A 139 ALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVL 218 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEEEECSSSCEEEEEEEEESTTHHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceEEEEEEECccHHHHHhhccCeEEEEeecCCCCCCcccccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCccccccCCCCeEEEeeecCCCCCccccccCceEEEEeeCCceEEEEcCcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 021200 161 ILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSR 240 (316)
Q Consensus 161 vlP~~~~~~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~ 240 (316)
|+|+++++++.|+++||+|+|+|||||||||||||+|||||+|+||||+|+||++|||++||+.|+++|+++|++++.++
T Consensus 219 V~Pe~~ev~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~~~~ 298 (371)
T 1zbt_A 219 VMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQI 298 (371)
T ss_dssp EEECCCGGGSCCCGGGEEEEEECC---------CCCCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeccccccccccCcCcEEEEEecCCCCCCCcccccceeEEEEECCCeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHhhcccccCCCCCceeEeecCCCceeeccccceecCcccccCCcChHHHHHHHHHHHHHHHHHccc
Q 021200 241 IHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 313 (316)
Q Consensus 241 ~~~~~~~~r~~~~~~~~rse~IRtYnf~~~rVtDhR~~~~~~~l~~vl~G~~ld~~i~~l~~~~~~~~~~~~~ 313 (316)
+.++.++.|++++++|+||++||||||||+||||||||++++||++||+| +||+||++++.++++++|+++.
T Consensus 299 ~~~~~~~~r~~~ig~g~Rse~IRtYnf~q~rVtDhRtg~~~~~l~~VldG-dLd~~I~a~l~~~~~~~l~~~~ 370 (371)
T 1zbt_A 299 AQDEQDAERKSTVGTGDRSERIRTYNFPQNRVTDHRIGLTLQKLDSILSG-KLDEVIDALILYDQTQKLEELN 370 (371)
T ss_dssp HHHHTCC----CCSCSCTTSEEEEEETTTTEEEETTTTEEESCHHHHHTT-CCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhccccccCCCeeeEECCCCEeeecccCCeECChHHHhCC-cHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999 6999999999999999998763
No 2
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=3e-104 Score=763.76 Aligned_cols=307 Identities=46% Similarity=0.760 Sum_probs=299.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccCCeeEEEEcCCCcHHHH
Q 021200 2 HLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 81 (316)
Q Consensus 2 ~~~~~~~~~~~el~el~~l~~e~~~D~em~e~a~eE~~~l~~~l~~le~~l~~~llp~~~~d~~~~~leI~aG~Gg~Ea~ 81 (316)
+.|++|+...+++.++.+|+. |+||++||++|+..++++++.++.+|...|+|++|+|.++|+|||+||+||+||+
T Consensus 46 ~~~~~~~~~~~~~~~~~el~~----D~e~~~~a~~e~~~l~~~~~~le~~l~~lLlp~~~~D~~n~ileI~aGaGG~Ea~ 121 (354)
T 3d5a_X 46 GLIREYRKVLEDLEQAESLLD----DPELKEMAKAEREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAA 121 (354)
T ss_dssp HHHHHHHHHHHHHHHHHTSTT----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccceEEEEEcCCCcHHHH
Confidence 578888999999999999873 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccceeeecceeEEEEeccccCCCCeeeceeEEEE
Q 021200 82 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 161 (316)
Q Consensus 82 ~~~~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~G~~ay~~l~~E~GvHrv~rvp~~~~~gR~hts~~~V~v 161 (316)
+||++||+||.+||+++||++++++..+++.+|||+|++.|+|++|||+|++|+|||||||||+|+++||+|||||+|+|
T Consensus 122 ~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~v~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V 201 (354)
T 3d5a_X 122 LFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAV 201 (354)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEEEEEEEEESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCccEEEEEEEECccHHHHHHhccCeeEEEecCCcCCCCcCccCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCccccccCCCCeEEEeeecCCCCCccccccCceEEEEeeCCceEEEEcCcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 021200 162 LPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRI 241 (316)
Q Consensus 162 lP~~~~~~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~ 241 (316)
+|+++++++.|+++||+|+|+|||||||||||||+|||||+|+||||+|+||++|||++||+.|+++|+++|++++.+++
T Consensus 202 ~P~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~SaVrl~HlPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~ 281 (354)
T 3d5a_X 202 LPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEE 281 (354)
T ss_dssp EECCCCCCCCCCGGGEEEEEECCCSCCHHHHHHCCCEEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccCcccccccCccceEEEeecCCCCCCcccccccceEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHhhcccccCCCCCceeEeecCCCceeeccccceecCcccccCCcChHHHHHHHHHHHHHHHHHccc
Q 021200 242 HLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 313 (316)
Q Consensus 242 ~~~~~~~r~~~~~~~~rse~IRtYnf~~~rVtDhR~~~~~~~l~~vl~G~~ld~~i~~l~~~~~~~~~~~~~ 313 (316)
.++.++.|++++++++||++||||||||+||||||||++++||++||+| +||+||++++.++++++|+++.
T Consensus 282 ~~~~~~~r~~~i~~g~rse~IRtYnf~q~rVtDhR~~~~~~~l~~vldG-~Ld~~I~a~l~~~~~~~l~~~~ 352 (354)
T 3d5a_X 282 AERLRKTRLAQIGTGERSEKIRTYNFPQSRVTDHRIGFTTHDLEGVLSG-HLTPILEALKRADQERQLAALA 352 (354)
T ss_dssp HHHHHHHHHHHSCGGGGSCSSEEEETTTTEEEETTTTEEECCHHHHTTT-CCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhcccccccCCeeeEECCCCeeeecccCceeCChHHhhCC-chHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999 6999999999999999998764
No 3
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=8.3e-104 Score=762.12 Aligned_cols=308 Identities=49% Similarity=0.825 Sum_probs=250.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccCCeeEEEEcCCCcHHHH
Q 021200 2 HLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 81 (316)
Q Consensus 2 ~~~~~~~~~~~el~el~~l~~e~~~D~em~e~a~eE~~~l~~~l~~le~~l~~~llp~~~~d~~~~~leI~aG~Gg~Ea~ 81 (316)
+.|++|.+..+++.++.+|+ + |+||+++|++|+..++++++.++.+|...|||++|+|.++|+|+|+||+||+||+
T Consensus 50 ~~~~~~~~~~~~~~~~~el~-e---D~e~~~~a~~e~~~l~~~~~~le~~l~~~ll~~~~~D~~n~ileI~aGaGG~Ea~ 125 (360)
T 2b3t_B 50 RCFTDWQQVQEDIETAQMML-D---DPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAA 125 (360)
T ss_dssp HHHHHHTTCC---------------------------------------CCCCCCCSCCSGGGSCEEEEEEECSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-c---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceEEEEEcCCCcHHHH
Confidence 56788888888999999998 3 8999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccceeeecceeEEEEeccccCCCCeeeceeEEEE
Q 021200 82 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 161 (316)
Q Consensus 82 ~~~~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~G~~ay~~l~~E~GvHrv~rvp~~~~~gR~hts~~~V~v 161 (316)
+||++||+||.+||+++||++++++..+++.+|||+|++.|+|++|||+|++|+|||||||||+|+++||+|||||+|+|
T Consensus 126 ~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~~~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V 205 (360)
T 2b3t_B 126 LFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAV 205 (360)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEEEEEEEECSSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceEEEEEEEcccHHHHHHhccCeEEEEecCCCcccCcCCccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCccc-cccCCCCeEEEeeecCCCCCccccccCceEEEEeeCCceEEEEcCcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 021200 162 LPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSR 240 (316)
Q Consensus 162 lP~~~~~~-~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~ 240 (316)
+|++++++ +.|+++||+|+|+|||||||||||||+|||||+|+||||+|+||++|||++||+.|+++|+++|+++..++
T Consensus 206 ~Pe~~~~e~i~i~~~dl~i~~~RssG~GGQ~VNkt~saVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~ 285 (360)
T 2b3t_B 206 MPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAK 285 (360)
T ss_dssp CBCCCTTTCCCCCSSSEEEEECCSSCCCTTTCCCSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTS
T ss_pred ecCcccccccccChhheEEeeecCCCCCCCccccccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887 89999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhHhhcccccCCCCCceeEeecCCCceeeccccceecCcccccCCcChHHHHHHHHHHHHHHHHHcccC
Q 021200 241 IHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 314 (316)
Q Consensus 241 ~~~~~~~~r~~~~~~~~rse~IRtYnf~~~rVtDhR~~~~~~~l~~vl~G~~ld~~i~~l~~~~~~~~~~~~~~ 314 (316)
+.++.+..|++++++|+||++||||||||+||||||||++++||++||+| +||+||++++.++++++|+++..
T Consensus 286 ~~~~~~~~r~~~i~~g~rse~IRtYnf~~~rVtDhRt~~~~~~l~~vldG-~Ld~~I~a~l~~~~~~~l~~~~~ 358 (360)
T 2b3t_B 286 RQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEG-KLDMLIEPIIQEHQADQLAALSE 358 (360)
T ss_dssp CC------CCC-------CCEEEEEETTTTEEEEGGGTEEESCHHHHHHT-CTHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhcccccccCCeeeEECCCCeeeecccCcEECCHHHHhCC-CHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888999999999999999999999999999999999999999999999 69999999999999999987654
No 4
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=3.2e-99 Score=725.46 Aligned_cols=297 Identities=44% Similarity=0.741 Sum_probs=266.9
Q ss_pred HHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccCCeeEEEEcCCCcHHHHHHHH
Q 021200 6 ELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 85 (316)
Q Consensus 6 ~~~~~~~el~el~~l~~e~~~D~em~e~a~eE~~~l~~~l~~le~~l~~~llp~~~~d~~~~~leI~aG~Gg~Ea~~~~~ 85 (316)
.|..+. +++++++|+.+ +.|+ ++|+..++++++.++.+|...|+| +|.++|+|+|+||+||+||++||+
T Consensus 38 ~~~~~~-~~~~~~~l~~e-~~D~------~~e~~~l~~~l~~le~~l~~lL~p---~D~~~aileI~aGaGG~Ea~~fa~ 106 (342)
T 1rq0_A 38 ITNRIK-ETQEFIELLRE-EGEN------ELEIEKYEKELDQLYQELLFLLSP---EASDKAIVEIRPGTGGEEAALFAR 106 (342)
T ss_dssp HHHHHH-HHHHHHTTTTT-TTTC------CSCHHHHHHHHHHHHHHHHHHHSC---SSCSEEEEEEEECSSTHHHHHHHH
T ss_pred HHHHHH-hHHHHHHHHHh-cCCH------HHHHHHHHHHHHHHHHHHHHhcCc---cccCCeEEEEEcCCCcHHHHHHHH
Confidence 344444 88888888854 3355 778999999999999999888886 568999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccceeeecceeEEEEeccccCCCCeeeceeEEEEecCC
Q 021200 86 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 165 (316)
Q Consensus 86 ~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~G~~ay~~l~~E~GvHrv~rvp~~~~~gR~hts~~~V~vlP~~ 165 (316)
+||+||.+||+++||++++++..+++.+|||+|++.|+|++|||+|++|+|||||||||+|+++||+|||||+|+|+|++
T Consensus 107 ~L~rMY~r~ae~~g~kvevl~~~~~~~gG~ks~~~~I~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~ 186 (342)
T 1rq0_A 107 DLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEI 186 (342)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEESTTHHHHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCCCccEEEEEEEECcCHHHHHhhccCeEEEEecCCcccCCCCcccceEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCeEEEeeecCCCCCccccccCceEEEEeeCCceEEEEcCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021200 166 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSR 245 (316)
Q Consensus 166 ~~~~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~ 245 (316)
+++++.|+++||+|+|+|||||||||||||+|||||+|+||||+|+||++|||++||+.|+++|+++|++++.+++.++.
T Consensus 187 ~~~~i~i~~~dl~i~~~RssGpGGQ~VNKt~SaVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~ 266 (342)
T 1rq0_A 187 EEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREI 266 (342)
T ss_dssp CGGGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccccChhHeEEEeecCCCCCCcccccccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhcccccCCCCCceeEeecCCCceeeccccceecCcccccCCcChHHHHHHHHHHHHHHHHHcccC
Q 021200 246 SKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS 314 (316)
Q Consensus 246 ~~~r~~~~~~~~rse~IRtYnf~~~rVtDhR~~~~~~~l~~vl~G~~ld~~i~~l~~~~~~~~~~~~~~ 314 (316)
+..|++++++++||++||||||||+||||||||++++||++||+| +||+||++++.++++++|+++.+
T Consensus 267 ~~~r~~~i~~g~Rse~IRtYnf~~~rVtDhRt~~~~~~l~~vldG-dLd~~I~a~l~~~~~~~l~~~~~ 334 (342)
T 1rq0_A 267 SQKRKSQIGTGERSEKIRTYNFPQNRVTDHRINYTSYRLQEILDG-DLDEIISKLIEHDIENNLEEVLG 334 (342)
T ss_dssp CC----------CCCEEEEEETTTTEEEETTTTEEESCHHHHHTT-CCHHHHHHHHHHHHTTTHHHHC-
T ss_pred HHHHHhhcccccccCCeEEEECCCCeeeecccCceeCCHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999 69999999999999999987754
No 5
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=100.00 E-value=3.3e-98 Score=724.75 Aligned_cols=296 Identities=34% Similarity=0.601 Sum_probs=280.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccCCeeEEEEcCCCcHHH
Q 021200 1 MHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 80 (316)
Q Consensus 1 ~~~~~~~~~~~~el~el~~l~~e~~~D~em~e~a~eE~~~l~~~l~~le~~l~~~llp~~~~d~~~~~leI~aG~Gg~Ea 80 (316)
++.|++|+....++.++.+|+.+ +.|++|+++|.+|+..++.+++.++. .+||++|+|.++|+|||+||+||+||
T Consensus 67 v~~~~~~~~~~~d~~~~~el~~~-e~D~e~~~~a~~e~~~l~~~l~~le~----~~ll~~~~D~~naileI~aGaGG~Ea 141 (365)
T 1gqe_A 67 VDTLDQMKQGLEDVSGLLELAVE-ADDEETFNEAVAELDALEEKLAQLEF----RRMFSGEYDSADCYLDIQAGSGGTEA 141 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHHGG----GGGCCSTTTTSCEEEEEEECSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHHHHH----HHccCCcccccceEEEEEcCCCcHHH
Confidence 35789999999999999999976 46999999999999999999999864 35679999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccceeeecceeEEEEeccccCCCCeeeceeEEE
Q 021200 81 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVA 160 (316)
Q Consensus 81 ~~~~~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~G~~ay~~l~~E~GvHrv~rvp~~~~~gR~hts~~~V~ 160 (316)
++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++|||+||+|+|||||||+|+|+++||+|||||+|+
T Consensus 142 ~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~e~~G~Ks~~~~I~G~~ayg~Lk~EsGvHRvqRvs~~es~gRrhTS~asV~ 221 (365)
T 1gqe_A 142 QDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAF 221 (365)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCceeEEEEEEECcCHHHHhhhccceEEEEEeCCCCCcCCCCcceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCC-ccccccCCCCeEEEeeecCCCCCccccccCceEEEEeeCCceEEEEcCcCcHHHHHHHHHHHHHHHHHHHHHH
Q 021200 161 ILPQAD-EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERS 239 (316)
Q Consensus 161 vlP~~~-~~~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~ 239 (316)
|+|+++ ++++.|+++||+|+|+|||||||||||||+|||||+|+||||+|+||++|||++||+.|+++|+++|++++.+
T Consensus 222 V~Pe~~~~v~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~ 301 (365)
T 1gqe_A 222 VYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQ 301 (365)
T ss_dssp EEECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCcccccccCHHHceEeeecCCCCCCCcccCccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999986 4889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHhhcccccCCCCCceeEeecCCCceeeccccceecCcccccCCcChHHHHHHHHHH
Q 021200 240 RIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 303 (316)
Q Consensus 240 ~~~~~~~~~r~~~~~~~~rse~IRtYnf~~~rVtDhR~~~~~~~l~~vl~G~~ld~~i~~l~~~ 303 (316)
++.++.++.|+.+. ...||++||||||||+||||||||++++||++||+| +||+||++++.+
T Consensus 302 ~~~~~~~~~r~~~~-~i~~G~~IRtY~f~~~rVkDhRt~~~~~~l~~vldG-dld~~I~a~l~~ 363 (365)
T 1gqe_A 302 KKNAEKQAMEDNKS-DIGWGSQIRSYVLDDSRIKDLRTGVETRNTQAVLDG-SLDQFIEASLKA 363 (365)
T ss_dssp HHHHHTTCCSTTCC-CCCSCSEEEEEEGGGTEEEETTTCCEESCHHHHHTT-CCHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhc-ccCccCCeEeEECCCCeeeccccCceECCHHHHhCC-CHHHHHHHHHHh
Confidence 99999999887432 346778999999999999999999999999999999 699999999865
No 6
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=100.00 E-value=1.7e-95 Score=705.30 Aligned_cols=289 Identities=37% Similarity=0.543 Sum_probs=269.6
Q ss_pred hHHHHHHHHHHHHHHHHH-hHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccCCeeEEEEcCCCcHHH
Q 021200 2 HLISELRTKQKEIDGLKS-LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 80 (316)
Q Consensus 2 ~~~~~~~~~~~el~el~~-l~~e~~~D~em~e~a~eE~~~l~~~l~~le~~l~~~llp~~~~d~~~~~leI~aG~Gg~Ea 80 (316)
+.|++|+....++.++.+ |+.+ +| ++|.+|+..+.++++.++. .+||++|+|.++|+|+|+||+||+||
T Consensus 60 ~~~~~~~~~~~d~~~~~e~l~~e--ed----~~a~~e~~~l~~~~~~le~----~~ll~~~~D~~~aileI~aGaGG~Ea 129 (365)
T 2ihr_1 60 DTFRSLESDLQGLLELMEELPAE--ER----EALKPELEEAAKKLDELYH----QTLLNFPHAEKNAILTIQPGAGGTEA 129 (365)
T ss_dssp HHHHHHHHHTTTHHHHTTCSCCT--TG----GGTGGGTHHHHHHHHHHHH----HHHTCSSSTTSEEEEEEEECSSTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc--cH----HHHHHHHHHHHHHHHHHHH----HHhcCCcccccCeEEEEEcCCCcHHH
Confidence 567788888888888888 7743 23 7889999999999999873 35669999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccceeeecceeEEEEeccccCCCCeeeceeEEE
Q 021200 81 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVA 160 (316)
Q Consensus 81 ~~~~~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i~G~~ay~~l~~E~GvHrv~rvp~~~~~gR~hts~~~V~ 160 (316)
++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++|||+|++|+|||||||+|+|+++||+|||||+|+
T Consensus 130 ~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~~~gG~ks~~~~I~G~~ayg~Lk~E~GvHRvqRvs~~es~gRrhTS~asV~ 209 (365)
T 2ihr_1 130 CDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILVKGENAYGLLSPEAGVHRLVRPSPFDASGRRHTSFAGVE 209 (365)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCeEEEEEEEEccCHHHhhhhCcCEEEEEEeCCCCccCCccceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCc-cccccCCCCeEEEeeecCCCCCccccccCceEEEEeeCCceEEEEcCcCcHHHHHHHHHHHHHHHHHHHHHH
Q 021200 161 ILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERS 239 (316)
Q Consensus 161 vlP~~~~-~~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~ 239 (316)
|+|++++ +++.|+++||+|+|+|||||||||||||+|||||+|+||||+|+||++|||++||+.|+++|+++|++++.+
T Consensus 210 V~P~~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~saVrl~h~Ptgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~ 289 (365)
T 2ihr_1 210 VIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERK 289 (365)
T ss_dssp EEEECCSSSSCCCCGGGEEEEEECCCCSSCCSGGGSCSEEEEEETTTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCcccccccCccceEEEEeecCCCCCceecccceEEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999864 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHh--hcccccCCCCCceeEeecCCCceeeccccceecCcccccCCcChHHHHHHHHHHH
Q 021200 240 RIHLSRSKLR--SEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQ 304 (316)
Q Consensus 240 ~~~~~~~~~r--~~~~~~~~rse~IRtYnf~~~rVtDhR~~~~~~~l~~vl~G~~ld~~i~~l~~~~ 304 (316)
++.++.++.| +.+++ ||++||||||||+||||||||++++||++||+| +||+||++++.+.
T Consensus 290 ~~~~~~~~~r~~~~~i~---~G~~IRtYnf~~~rVtDhRtg~~~~~l~~VldG-dld~~I~a~l~~~ 352 (365)
T 2ihr_1 290 KREEELKALRGEVRPIE---WGSQIRSYVLDKNYVKDHRTGLMRHDPENVLDG-DLMDLIWAGLEWK 352 (365)
T ss_dssp HHHHHTTTTTCCSCCSC---CCSCSEEEEGGGTEEEETTTCCEESCHHHHTTT-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccC---ccCCeeeEECCCccchhcccCceeCChHHHhCC-cHHHHHHHHHHHH
Confidence 9999999988 45554 556899999999999999999999999999999 6999999999875
No 7
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=100.00 E-value=4.2e-39 Score=265.24 Aligned_cols=98 Identities=28% Similarity=0.379 Sum_probs=94.1
Q ss_pred eEEEEeccccCCCCeeeceeEEEEecCCCc-cccccCCCCeEEEeeecCCCCCccccccCceEEEEeeCCceEEEEcCcC
Q 021200 138 HRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDER 216 (316)
Q Consensus 138 Hrv~rvp~~~~~gR~hts~~~V~vlP~~~~-~~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~R 216 (316)
|||||+|.|+++| ||+++|+|+|+.+. ..+.|+++||+|+|+|||||||||||||+|||||+|+||||+|+||++|
T Consensus 11 ~rvqrvp~tes~g---ts~~~v~v~p~~d~~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~R 87 (115)
T 2rsm_A 11 LRLQEKPALLFPG---MAASTVQVAGRKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTR 87 (115)
T ss_dssp CCCCCCCCCCCCC---CCCCCCCCCSCCCCCCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCSS
T ss_pred eeEEecCcccCCc---cceEEEEeccccCCCccCCcCHHHeEEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCCC
Confidence 7999999999999 99999999999875 4588999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 021200 217 SQHMNKAKALKVLCAKLYEMER 238 (316)
Q Consensus 217 Sq~~Nk~~A~~~L~~~L~~~~~ 238 (316)
||++||+.||++|+++|++++.
T Consensus 88 SQ~~Nr~~A~~~L~~kL~e~~~ 109 (115)
T 2rsm_A 88 SVDQNRKIARKVLQEKVDVFYN 109 (115)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999865
No 8
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.94 E-value=8e-27 Score=192.65 Aligned_cols=71 Identities=27% Similarity=0.405 Sum_probs=67.4
Q ss_pred ccccccCCCCeEEEeeecCCCCCccccccCceEEEE-eeCCc------------------------eEEEEcCcCcHHHH
Q 021200 167 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT-HIPTG------------------------MTISIQDERSQHMN 221 (316)
Q Consensus 167 ~~~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~-h~ptg------------------------i~v~~~~~RSq~~N 221 (316)
.+++.|+++||+++|+|||||||||||||+|||+|+ |+||| |+|+||++|||++|
T Consensus 12 ~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~N 91 (112)
T 1j26_A 12 QASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRN 91 (112)
T ss_dssp SSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHH
T ss_pred ceEEecChHHeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHH
Confidence 457789999999999999999999999999999997 99998 99999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 021200 222 KAKALKVLCAKLYEME 237 (316)
Q Consensus 222 k~~A~~~L~~~L~~~~ 237 (316)
|++|+++|+++|+++.
T Consensus 92 r~~Al~rL~~~l~~a~ 107 (112)
T 1j26_A 92 LAECLQKIRDMIAEAS 107 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998864
No 9
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.93 E-value=1.1e-26 Score=190.80 Aligned_cols=69 Identities=29% Similarity=0.529 Sum_probs=66.1
Q ss_pred ccccCCCCeEEEeeecCCCCCccccccCceEEEEe------eC-----------------Cc-eEEEEcCcCcHHHHHHH
Q 021200 169 DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH------IP-----------------TG-MTISIQDERSQHMNKAK 224 (316)
Q Consensus 169 ~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h------~p-----------------tg-i~v~~~~~RSq~~Nk~~ 224 (316)
++.|+++||+++|+|||||||||||||+|||+|+| +| || |+|+||++|||++||++
T Consensus 7 ~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~ 86 (108)
T 2jva_A 7 NVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRAD 86 (108)
T ss_dssp SCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHHH
T ss_pred ccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHHHH
Confidence 57789999999999999999999999999999999 88 88 99999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 021200 225 ALKVLCAKLYEME 237 (316)
Q Consensus 225 A~~~L~~~L~~~~ 237 (316)
|+++|+++|+++.
T Consensus 87 Al~rL~~~l~~a~ 99 (108)
T 2jva_A 87 ALLRLSELIVNAA 99 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998865
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.91 E-value=8.9e-25 Score=186.86 Aligned_cols=70 Identities=34% Similarity=0.565 Sum_probs=66.3
Q ss_pred ccccCCCCeEEEeeecCCCCCccccccCceEEEE------eeCC------------------ceEEEEcCcCcHHHHHHH
Q 021200 169 DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT------HIPT------------------GMTISIQDERSQHMNKAK 224 (316)
Q Consensus 169 ~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~------h~pt------------------gi~v~~~~~RSq~~Nk~~ 224 (316)
++.|+++||+|+|+|||||||||||||+|||+|+ |+|+ ||+|+||++|||++|++.
T Consensus 7 ~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~~ 86 (140)
T 4dh9_Y 7 HVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREA 86 (140)
T ss_dssp SSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHHH
T ss_pred CCccChHHeEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHHH
Confidence 5789999999999999999999999999999999 7998 599999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 021200 225 ALKVLCAKLYEMER 238 (316)
Q Consensus 225 A~~~L~~~L~~~~~ 238 (316)
|+++|.++|+++..
T Consensus 87 A~~rL~~~l~~a~~ 100 (140)
T 4dh9_Y 87 ALARLVAMIKELTT 100 (140)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998763
No 11
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=73.85 E-value=16 Score=25.42 Aligned_cols=42 Identities=24% Similarity=0.195 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 021200 7 LRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQ 49 (316)
Q Consensus 7 ~~~~~~el~el~~l~~e~~~D~em~e~a~eE~~~l~~~l~~le 49 (316)
...+..|++|+..|+.. -.-+..++.+..|+..++.++..++
T Consensus 6 ~eeL~~DL~El~~Ll~~-AkR~rVk~~L~~ei~~lE~ei~~~~ 47 (50)
T 2a26_A 6 SEELQKDLEEVKVLLEK-ATRKRVRDALTAEKSKIETEIKNKM 47 (50)
T ss_dssp HHHHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678899999999865 4689999999999999998887653
No 12
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=48.22 E-value=44 Score=25.15 Aligned_cols=41 Identities=29% Similarity=0.277 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 021200 7 LRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRL 48 (316)
Q Consensus 7 ~~~~~~el~el~~l~~e~~~D~em~e~a~eE~~~l~~~l~~l 48 (316)
...+..||+|+..|+.. ..-+..++.+..|+..++.++..+
T Consensus 5 ~eeL~~DLeEl~~Ll~~-AkR~rVk~~L~~ei~~lE~ei~~~ 45 (77)
T 1ysm_A 5 LEELQKDLEEVKVLLEK-STRKRLRDTLTSEKSKIETELKNK 45 (77)
T ss_dssp HHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999865 367889999999999999887764
No 13
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=44.38 E-value=1.3e+02 Score=24.82 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 021200 2 HLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLL 57 (316)
Q Consensus 2 ~~~~~~~~~~~el~el~~l~~e~~~D~em~e~a~eE~~~l~~~l~~le~~l~~~ll 57 (316)
.+|..|.....-+..+.-+++- -.|+|++.+++.-++....+++.+++.+...=+
T Consensus 21 ~lW~~l~~~~~~i~~~~~f~~~-~~D~elk~iL~~~~~~~~~~i~~l~~~~~~~g~ 75 (171)
T 2rbd_A 21 STWTYLSTNNGLINGYRSFINH-TGDEDLKNLIDEAIQAMQDENHQLEELLRSNGV 75 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3567777777777777777765 479999999999999999999999888765533
No 14
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=41.57 E-value=12 Score=27.19 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=32.3
Q ss_pred CCCCccccc--cCceEEEEeeCCce---EEEEcCcCcHHHHHHHHHHHHHHHHH
Q 021200 186 GSGGQHANT--TNSAVRVTHIPTGM---TISIQDERSQHMNKAKALKVLCAKLY 234 (316)
Q Consensus 186 GpGGQ~VNk--t~saVrl~h~ptgi---~v~~~~~RSq~~Nk~~A~~~L~~~L~ 234 (316)
|+||.++++ .+|.++|.-.+.|- +|+.... ..+-..|..++..+|.
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~---~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 21 GKKGESVKKMREESGARINISEGNCPERIITLAGP---TNAIFKAFAMIIDKLE 71 (73)
T ss_dssp CGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC---HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC---HHHHHHHHHHHHHHHh
Confidence 899999985 46788887666662 4455543 4567788888888775
No 15
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=41.54 E-value=39 Score=26.32 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=35.4
Q ss_pred CCCCccccc--cCceEEEEeeCCc---eEEEEcCcCcHHHHHHHHHHHHHHHHHHHHHH
Q 021200 186 GSGGQHANT--TNSAVRVTHIPTG---MTISIQDERSQHMNKAKALKVLCAKLYEMERS 239 (316)
Q Consensus 186 GpGGQ~VNk--t~saVrl~h~ptg---i~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~ 239 (316)
|+||-++++ .+|.|+|.-.+.| -.|+.... . .|-+.|..++...+.+.+.+
T Consensus 33 G~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~--~-e~v~~A~~~I~~i~~e~e~~ 88 (104)
T 2ctk_A 33 GQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL--A-ANLDRAKAGLLERVKELQAE 88 (104)
T ss_dssp CSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC--H-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC--H-HHHHHHHHHHHHHHhhHHHh
Confidence 899999995 4678887766665 12333332 3 67889999999988776654
No 16
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=41.15 E-value=1.1e+02 Score=22.93 Aligned_cols=47 Identities=11% Similarity=0.161 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhHhhcC---CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021200 6 ELRTKQKEIDGLKSLIYECS---EDKDMLDMATEELCLAIDEEKRLQSLL 52 (316)
Q Consensus 6 ~~~~~~~el~el~~l~~e~~---~D~em~e~a~eE~~~l~~~l~~le~~l 52 (316)
.+..+..++.++...+.+++ .|++-...+..++..+..+++.+..+.
T Consensus 30 ~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 30 LLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777666543 466666667778888888777776553
No 17
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=40.21 E-value=29 Score=26.68 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=34.3
Q ss_pred CCCCCccccc--cCceEEEEeeCCc------eEEEEcCcCcHHHHHHHHHHHHHHHHHHHH
Q 021200 185 GGSGGQHANT--TNSAVRVTHIPTG------MTISIQDERSQHMNKAKALKVLCAKLYEME 237 (316)
Q Consensus 185 sGpGGQ~VNk--t~saVrl~h~ptg------i~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~ 237 (316)
=|+||.++|+ .+|.|+|.-.+.| -.|..... ..|-+.|..++...+.+.+
T Consensus 32 IGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~---~e~v~~A~~~I~~iv~e~e 89 (97)
T 2ctl_A 32 IGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY---EKNTEAARDAILRIVGELE 89 (97)
T ss_dssp SCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC---HHHHHHHHHHHHHHHHHHH
Confidence 4899999996 4578888766666 14444442 3477888888888765543
No 18
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=39.22 E-value=32 Score=26.80 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=32.0
Q ss_pred CCCCccccccC---ceEEEEeeC-CceEEEEcCcCcHHHHHHHHHHHHHHHHHHHH
Q 021200 186 GSGGQHANTTN---SAVRVTHIP-TGMTISIQDERSQHMNKAKALKVLCAKLYEME 237 (316)
Q Consensus 186 GpGGQ~VNkt~---saVrl~h~p-tgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~ 237 (316)
|+||+++++.. ++|+| +.| ..=.|+.... ...-+.|...|...+.++.
T Consensus 43 G~~G~~Ik~i~~~~~~v~I-~fp~~~~~ItI~G~---~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 43 GKKGQNLAKITQQMPKVHI-EFTEGEDKITLEGP---TEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp TTTTCHHHHHHHHCSSSEE-EECSSSCEEEEEEC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCcEE-EeCCCCCEEEEECC---HHHHHHHHHHHHHHHHHHH
Confidence 78999999744 36777 466 3335666654 4567778888877765544
No 19
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=33.23 E-value=1.1e+02 Score=20.47 Aligned_cols=36 Identities=25% Similarity=0.141 Sum_probs=26.9
Q ss_pred HHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021200 17 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLL 53 (316)
Q Consensus 17 l~~l~~e~~~D~em~e~a~eE~~~l~~~l~~le~~l~ 53 (316)
+..+-.+ ...||-..-++.|++.+++++..+..++.
T Consensus 9 lqalkke-gfspeelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 9 LQALKKE-GFSPEELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHT-TCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344 56888888889999999999998887764
No 20
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=31.00 E-value=33 Score=24.60 Aligned_cols=44 Identities=23% Similarity=0.242 Sum_probs=29.2
Q ss_pred CCCCCccccc--cCceEEEEeeCCce---EEEEcCcCcHHHHHHHHHHHHHH
Q 021200 185 GGSGGQHANT--TNSAVRVTHIPTGM---TISIQDERSQHMNKAKALKVLCA 231 (316)
Q Consensus 185 sGpGGQ~VNk--t~saVrl~h~ptgi---~v~~~~~RSq~~Nk~~A~~~L~~ 231 (316)
=||||.++|+ -+|.|+|.-.+.|- .|+..... .+-+.|.+++..
T Consensus 20 IG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~~---~~v~~A~~~I~~ 68 (71)
T 1vig_A 20 IGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDP---QGVQQAKRELLE 68 (71)
T ss_dssp TCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEESS---HHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcCH---HHHHHHHHHHHH
Confidence 4899999995 46889988777771 23333332 456777776654
No 21
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=27.90 E-value=70 Score=23.60 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=32.5
Q ss_pred CCCCccccc--cCceEEEEeeCC-----c---eEEEEcCcCcHHHHHHHHHHHHHHHHHHHH
Q 021200 186 GSGGQHANT--TNSAVRVTHIPT-----G---MTISIQDERSQHMNKAKALKVLCAKLYEME 237 (316)
Q Consensus 186 GpGGQ~VNk--t~saVrl~h~pt-----g---i~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~ 237 (316)
|+||.+++. -.|.++|.-.+. | -.|+...+ ..+-..|..++...+.+.+
T Consensus 19 GkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~---~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 19 GKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS---PAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC---HHHHHHHHHHHHHHHhccc
Confidence 889998884 346667654332 2 45555554 4577889999988876643
No 22
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.72 E-value=2.4e+02 Score=27.94 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 021200 34 ATEELCLAIDEEKRLQSLLLKSL 56 (316)
Q Consensus 34 a~eE~~~l~~~l~~le~~l~~~l 56 (316)
+++++..+++++.+++.++...|
T Consensus 83 l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 83 LSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677778888888888776554
No 23
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=27.54 E-value=59 Score=24.78 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=32.7
Q ss_pred CCCCccccc--cCceEEEEeeCCce----EEEEcCcCcHHHHHHHHHHHHHHHHHHHH
Q 021200 186 GSGGQHANT--TNSAVRVTHIPTGM----TISIQDERSQHMNKAKALKVLCAKLYEME 237 (316)
Q Consensus 186 GpGGQ~VNk--t~saVrl~h~ptgi----~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~ 237 (316)
||||..+++ -+|.|+|..-+.|- .|+.... ..|-+.|.+++...+.+.+
T Consensus 33 G~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~---~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 33 GARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL---PENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp CSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC---HHHHHHHHHHHHHHHHHHH
Confidence 899999985 45788887666661 3333332 2678888888887665443
No 24
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=26.29 E-value=38 Score=25.71 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=29.9
Q ss_pred CCCCcccccc--CceEEEEeeC----CceEEEEcCcCcHHHHHHHHHHHHHHHHHH
Q 021200 186 GSGGQHANTT--NSAVRVTHIP----TGMTISIQDERSQHMNKAKALKVLCAKLYE 235 (316)
Q Consensus 186 GpGGQ~VNkt--~saVrl~h~p----tgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~ 235 (316)
|+||.++++- +|.|+|.-.+ +|. |+.... ..+-+.|..++...+.+
T Consensus 33 G~gG~~Ik~I~~etg~~I~i~~~~~~~~~-V~I~G~---~e~v~~A~~~I~~i~~~ 84 (94)
T 2cte_A 33 GKNGEKLQDLELKTATKIQIPRPDDPSNQ-IKITGT---KEGIEKARHEVLLISAE 84 (94)
T ss_dssp CSSSCHHHHHHHHTTCCCBCCCTTSSCCE-EEEEEC---HHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHCCEEEeCCCCCCCCe-EEEEEC---HHHHHHHHHHHHHHhhc
Confidence 8999999953 4667765433 453 333332 46777888888877654
No 25
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.34 E-value=1.3e+02 Score=29.99 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=38.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEE
Q 021200 76 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAI 122 (316)
Q Consensus 76 Gg~Ea~~~~~~L~~my~~~a~~~g~~~~~~~~~~~~~~g~~~~~~~i 122 (316)
-+.++..+...++++|..+.+..|+.+.++....++.++..+-++.|
T Consensus 308 ~pe~s~~e~e~ml~~~e~il~~LgLpyrvv~~~tgdlg~~a~~tyDi 354 (485)
T 3qne_A 308 EPEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDL 354 (485)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCCcccCCchhhheee
Confidence 45788889999999999999999999999998888876644444433
No 26
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=24.29 E-value=3.2e+02 Score=26.54 Aligned_cols=69 Identities=22% Similarity=0.248 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHH-----------hHhhcCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhC---------
Q 021200 1 MHLISELRTKQKEIDGLKS-----------LIYECSEDKDMLDMATE---ELCLAIDEEKRLQSLLLKSLL--------- 57 (316)
Q Consensus 1 ~~~~~~~~~~~~el~el~~-----------l~~e~~~D~em~e~a~e---E~~~l~~~l~~le~~l~~~ll--------- 57 (316)
++++++++++..++++++. +....++..++++.+++ +++.+++++.++++++...|+
T Consensus 34 ~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~ 113 (455)
T 2dq0_A 34 LKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPS 113 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Q ss_pred -CCCCCccCCeeE
Q 021200 58 -PKDDADERDCIL 69 (316)
Q Consensus 58 -p~~~~d~~~~~l 69 (316)
|.++.++.|+.|
T Consensus 114 vP~g~~e~~n~~~ 126 (455)
T 2dq0_A 114 VPVGKDENDNVPI 126 (455)
T ss_dssp SCCCSSGGGCEEE
T ss_pred CCCCCCCCCCEEE
No 27
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=23.76 E-value=26 Score=28.67 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=33.8
Q ss_pred CCCCccccc--cCceEEEEeeCCce-------EEEEcCcCcHHHHHHHHHHHHHHHHHHHHH
Q 021200 186 GSGGQHANT--TNSAVRVTHIPTGM-------TISIQDERSQHMNKAKALKVLCAKLYEMER 238 (316)
Q Consensus 186 GpGGQ~VNk--t~saVrl~h~ptgi-------~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~ 238 (316)
|+||.+++. ..|.++|.-.+.+. .|+...+. .+-+.|...+...|.+.+.
T Consensus 101 GkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~---~~v~~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 101 GKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHF---YASQMAQRKIRDILAQVKQ 159 (163)
T ss_dssp CGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECH---HHHHHHHHHHHHHHHHHTC
T ss_pred cCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCH---HHHHHHHHHHHHHHHHHHH
Confidence 789999885 35778876544442 55555533 4577788888888877654
No 28
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=23.70 E-value=2.9e+02 Score=22.38 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021200 2 HLISELRTKQKEIDGLKSLIYEC-SEDKDMLDMATEELCLAIDEEKRLQSLLLK 54 (316)
Q Consensus 2 ~~~~~~~~~~~el~el~~l~~e~-~~D~em~e~a~eE~~~l~~~l~~le~~l~~ 54 (316)
.+++.|......+.++..++.-. ++=++-.+-+.+|+.+++.+++.+..++..
T Consensus 4 ~A~~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 4 AAIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp GGTHHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888999999988642 233455667778888899888888877554
No 29
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.27 E-value=3.7e+02 Score=22.94 Aligned_cols=44 Identities=9% Similarity=0.015 Sum_probs=29.3
Q ss_pred HHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021200 13 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSL 56 (316)
Q Consensus 13 el~el~~l~~e~~~D~em~e~a~eE~~~l~~~l~~le~~l~~~l 56 (316)
.-.++..|+..+..|++-.+-+..|+.++..++.....++...|
T Consensus 97 kr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em 140 (175)
T 3lay_A 97 KRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAM 140 (175)
T ss_dssp HHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666655567888777788888888877766655544444
No 30
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=21.55 E-value=63 Score=24.75 Aligned_cols=48 Identities=23% Similarity=0.218 Sum_probs=30.6
Q ss_pred CCCCCcccccc--Cc-eEEEEeeCCc---eEEEEcCcCcHHHHHHHHHHHHHHHHHH
Q 021200 185 GGSGGQHANTT--NS-AVRVTHIPTG---MTISIQDERSQHMNKAKALKVLCAKLYE 235 (316)
Q Consensus 185 sGpGGQ~VNkt--~s-aVrl~h~ptg---i~v~~~~~RSq~~Nk~~A~~~L~~~L~~ 235 (316)
=||||..+|+- ++ .|+|...+.| -.|+.... .. +-+.|.+++...+.+
T Consensus 32 IG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~--~~-~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 32 IGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGP--SS-DVEKAKKQLLHLAEE 85 (95)
T ss_dssp HCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESC--HH-HHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcC--HH-HHHHHHHHHHHHHhh
Confidence 38999999963 45 6777655566 23334332 22 777888888776644
No 31
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=21.48 E-value=2.8e+02 Score=21.29 Aligned_cols=54 Identities=11% Similarity=0.128 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhHhh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 021200 6 ELRTKQKEIDGLKSLIYE-----CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPK 59 (316)
Q Consensus 6 ~~~~~~~el~el~~l~~e-----~~~D~em~e~a~eE~~~l~~~l~~le~~l~~~llp~ 59 (316)
.+......|+++.+|+.. -.-++..+..+..-+.....++..+..++.....++
T Consensus 39 ~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~~~ 97 (102)
T 1vcs_A 39 MVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAS 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555666666666531 122455666666666677777777766666655543
No 32
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=20.87 E-value=42 Score=23.98 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=28.3
Q ss_pred CCCCccccc--cCceEEEEeeCC-----c---eEEEEcCcCcHHHHHHHHHHHHHHHH
Q 021200 186 GSGGQHANT--TNSAVRVTHIPT-----G---MTISIQDERSQHMNKAKALKVLCAKL 233 (316)
Q Consensus 186 GpGGQ~VNk--t~saVrl~h~pt-----g---i~v~~~~~RSq~~Nk~~A~~~L~~~L 233 (316)
|+||.+++. -.|.++|.-.+. | -.|+.... ..+-..|..++.+.+
T Consensus 19 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i 73 (76)
T 1dtj_A 19 GKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS---PAATQAAQYLISQRV 73 (76)
T ss_dssp CSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES---HHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC---HHHHHHHHHHHHHHH
Confidence 899999884 346677654432 2 34455543 356677888777765
No 33
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=20.84 E-value=2.9e+02 Score=27.37 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhHh-----------------------------------hcCCCHHH--------HHHHHHH
Q 021200 1 MHLISELRTKQKEIDGLKSLIY-----------------------------------ECSEDKDM--------LDMATEE 37 (316)
Q Consensus 1 ~~~~~~~~~~~~el~el~~l~~-----------------------------------e~~~D~em--------~e~a~eE 37 (316)
+++.+++++++.+++++..--+ ..++-.++ ...++++
T Consensus 40 ~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 119 (484)
T 3lss_A 40 IEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQ 119 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhh--CCCCCCccCCe
Q 021200 38 LCLAIDEEKRLQSLLLKSL--LPKDDADERDC 67 (316)
Q Consensus 38 ~~~l~~~l~~le~~l~~~l--lp~~~~d~~~~ 67 (316)
+..+++++.+++.++...+ +|.-+.+.-++
T Consensus 120 i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~ 151 (484)
T 3lss_A 120 VAGLAKEAQQLEEERDKLMLNVGNILHESVPI 151 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
No 34
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=20.05 E-value=44 Score=24.01 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=28.2
Q ss_pred CCCCccccc--cCceEEEEeeC-----CceEEEEcCcCcHHHHHHHHHHHHHHHHH
Q 021200 186 GSGGQHANT--TNSAVRVTHIP-----TGMTISIQDERSQHMNKAKALKVLCAKLY 234 (316)
Q Consensus 186 GpGGQ~VNk--t~saVrl~h~p-----tgi~v~~~~~RSq~~Nk~~A~~~L~~~L~ 234 (316)
|+||.+++. -.|.++|.-.+ +--.|..... ..+-..|..++.+.+.
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 21 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGS---AASISLAQYLINVRLS 73 (76)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC---HHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeC---HHHHHHHHHHHHHHHH
Confidence 889998884 34667765433 1233444443 4566778888877664
Done!