RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021200
(316 letters)
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 455 bits (1173), Expect = e-162
Identities = 128/313 (40%), Positives = 200/313 (63%), Gaps = 1/313 (0%)
Query: 1 MHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKD 60
+ + E + + I + +I + S D ++ +MA EEL + ++ + L LLPKD
Sbjct: 59 VAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLRFLLLPKD 118
Query: 61 DADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASA 120
D+++ ILE+R GG+EA+LFA D+ MY++Y++ +GWKFEV+ + + + G KE A
Sbjct: 119 PNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVA 178
Query: 121 AISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRID 180
+SG VY KLK+ESG HRVQRVP+TE GRVHTS +V ++P+ +EV+ + +DLR+D
Sbjct: 179 MVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVD 238
Query: 181 TYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSR 240
Y + G+GGQ+ N +AVR+ H+PT + + +Q+ER+Q N+ KA+K++ A++ +
Sbjct: 239 IYHASGAGGQNVNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQI 298
Query: 241 IHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDAL 300
+ R +G+GDRSERIRTYNFPQ RVTDHR+G+T + ++ G+ LD IDAL
Sbjct: 299 AQDEQDAERKSTVGTGDRSERIRTYNFPQNRVTDHRIGLTLQKLDSILSGK-LDEVIDAL 357
Query: 301 LLQQEMDAIASFG 313
+L + +
Sbjct: 358 ILYDQTQKLEELN 370
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein,
ribosomal protein, RNA-binding, binding, metal-binding,
zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y
3d5c_X 3mr8_V 3ms0_V
Length = 354
Score = 447 bits (1153), Expect = e-159
Identities = 140/310 (45%), Positives = 205/310 (66%), Gaps = 5/310 (1%)
Query: 4 ISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDAD 63
I E R ++++ +SL+ +D ++ +MA E + ++ L+ L + LLPKD D
Sbjct: 48 IREYRKVLEDLEQAESLL----DDPELKEMAKAEREALLARKEALEKELERHLLPKDPMD 103
Query: 64 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 123
ERD I+E+RAGTGGEEA+LFA D+F MY R++++ G++ EV+ +DL G+ + +
Sbjct: 104 ERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVFEVR 163
Query: 124 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYR 183
G G YG K+ESG+HRVQRVP+TE GR+HTS +VA+LP+A+E D L +++RID R
Sbjct: 164 GPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDVMR 223
Query: 184 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHL 243
+ G GGQ NTT+SAVRV H+PTG+ ++ QD RSQ N+ KAL +L ++L EM+R+
Sbjct: 224 ASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAE 283
Query: 244 SRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 303
K R QIG+G+RSE+IRTYNFPQ RVTDHR+G T H + ++ G L ++AL
Sbjct: 284 RLRKTRLAQIGTGERSEKIRTYNFPQSRVTDHRIGFTTHDLEGVLSGH-LTPILEALKRA 342
Query: 304 QEMDAIASFG 313
+ +A+
Sbjct: 343 DQERQLAALA 352
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 446 bits (1150), Expect = e-158
Identities = 150/311 (48%), Positives = 223/311 (71%), Gaps = 6/311 (1%)
Query: 4 ISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDAD 63
++ + Q++I+ + ++ +D +M +MA +EL A ++ ++L+ L LLPKD D
Sbjct: 52 FTDWQQVQEDIETAQMML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDD 107
Query: 64 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 123
ER+ LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ +E + GYKE A IS
Sbjct: 108 ERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKIS 167
Query: 124 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVR-LRNEDLRIDTY 182
G GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ + ++ + DLRIDT+
Sbjct: 168 GDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTF 227
Query: 183 RSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIH 242
RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL A+++ E ++
Sbjct: 228 RSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQ 287
Query: 243 LSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 302
+ + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + ++MEG+ LD+ I+ ++
Sbjct: 288 QAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGK-LDMLIEPIIQ 346
Query: 303 QQEMDAIASFG 313
+ + D +A+
Sbjct: 347 EHQADQLAALS 357
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 433 bits (1117), Expect = e-154
Identities = 129/289 (44%), Positives = 190/289 (65%), Gaps = 2/289 (0%)
Query: 25 SEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFA 84
+ + + EL + EK L L + L I+E+R GTGGEEA+LFA
Sbjct: 47 EFIELLREEGENELEIE-KYEKELDQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFA 105
Query: 85 VDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVP 144
D+F+MY RY+++KGW EV + E+DL G +E + G YG LK+ESG+HRVQRVP
Sbjct: 106 RDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVP 165
Query: 145 LTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 204
+TE GR+HTS +VA+LP+ +E D+ +R EDL+I+T+R+ G GGQ+ N T SAVR+TH+
Sbjct: 166 VTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHL 225
Query: 205 PTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT 264
PTG+ +S Q+ERSQ+ NK AL++L A+LY++++ + S+ R QIG+G+RSE+IRT
Sbjct: 226 PTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRT 285
Query: 265 YNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 313
YNFPQ RVTDHR+ T + + ++++G+ LD I L+ + +
Sbjct: 286 YNFPQNRVTDHRINYTSYRLQEILDGD-LDEIISKLIEHDIENNLEEVL 333
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 262 bits (671), Expect = 4e-86
Identities = 111/310 (35%), Positives = 171/310 (55%), Gaps = 13/310 (4%)
Query: 3 LISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE-----KRLQSLLLKSLL 57
+ E ++ +D +SL + ++++ E A+ E K+L L ++LL
Sbjct: 48 VSQEAARLRRTVDTFRSLESDLQGLLELMEELPAEEREALKPELEEAAKKLDELYHQTLL 107
Query: 58 PKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKE 117
E++ IL ++ G GG EA +A + +MY R+++++G++ EVV +T G
Sbjct: 108 -NFPHAEKNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDY 166
Query: 118 ASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNED 176
A + G YG L E+G+HR+ R + SGR HTS V ++P+ DE V+V L+ E+
Sbjct: 167 AQILVKGENAYGLLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIPEVDEEVEVVLKPEE 226
Query: 177 LRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEM 236
LRID R+ G GGQ NTT+SAVRV H+PTG+T++ Q RSQ NK ALK+L A+LYE+
Sbjct: 227 LRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYEL 286
Query: 237 ERSRIHLSRSKLRSEQ--IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLD 294
ER + LR E I G +IR+Y + V DHR G+ H ++++G+ L
Sbjct: 287 ERKKREEELKALRGEVRPIEWGS---QIRSYVLDKNYVKDHRTGLMRHDPENVLDGD-LM 342
Query: 295 IFIDALLLQQ 304
I A L +
Sbjct: 343 DLIWAGLEWK 352
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 254 bits (650), Expect = 5e-83
Identities = 107/314 (34%), Positives = 173/314 (55%), Gaps = 17/314 (5%)
Query: 3 LISELRTKQKEIDGLKSLIYECSEDKDMLDMATEE--------LCLAIDE-EKRLQSLLL 53
L E + + +D L + + +L++A E +D E++L L
Sbjct: 56 LGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEF 115
Query: 54 KSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLR 113
+ + + D DC L+++AG+GG EA +A + +MY R+++ +G+K E++ +E ++
Sbjct: 116 RRMF-SGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVA 174
Query: 114 GYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRL 172
G K + ISG YG L+ E+G+HR+ R + GR HTS S + P+ D+ +D+ +
Sbjct: 175 GIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEI 234
Query: 173 RNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAK 232
DLRID YR+ G+GGQH N T SAVR+THIPTG+ Q++RSQH NK +A+K + AK
Sbjct: 235 NPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAK 294
Query: 233 LYEMERSRIHLSRSKLRSEQ--IGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEG 290
LYE+E + + + + + IG G +IR+Y R+ D R G+ +++G
Sbjct: 295 LYEVEMQKKNAEKQAMEDNKSDIGWGS---QIRSYVLDDSRIKDLRTGVETRNTQAVLDG 351
Query: 291 ENLDIFIDALLLQQ 304
LD FI+A L
Sbjct: 352 S-LDQFIEASLKAG 364
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial;
GGQ domain, translation; NMR {Mus musculus}
Length = 115
Score = 163 bits (414), Expect = 7e-51
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 12/122 (9%)
Query: 120 AAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLR 178
+ G +G R+Q P G +A +V + + D + L +L
Sbjct: 1 GSSGSSGKWG--------LRLQEKPALLFPG---MAASTVQVAGRKDYPALLPLNESELE 49
Query: 179 IDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMER 238
+ G GGQ N T++ V + H+P+G+ + RS N+ A KVL K+
Sbjct: 50 EQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQEKVDVFYN 109
Query: 239 SR 240
S
Sbjct: 110 SG 111
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 67.1 bits (164), Expect = 5e-14
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 24/97 (24%)
Query: 166 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT----------------------- 202
V + + +L I R+ G+GGQH N T++A+ +
Sbjct: 4 ISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHL 63
Query: 203 -HIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMER 238
+ I Q+ RSQ +N+ AL L A + E+
Sbjct: 64 ISSDGVIVIKAQEYRSQELNREAALARLVAMIKELTT 100
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural
genomics, PSI-2, protein STRU initiative; NMR
{Pseudomonas syringae PV}
Length = 108
Score = 64.9 bits (158), Expect = 1e-13
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 24/94 (25%)
Query: 169 DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG--------------------- 207
+V L + ++ + R+ G+GGQ+ N +SA+ +
Sbjct: 7 NVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITS 66
Query: 208 ---MTISIQDERSQHMNKAKALKVLCAKLYEMER 238
+ + Q R+Q N+A AL L + +
Sbjct: 67 DGVIVLKAQQYRTQEQNRADALLRLSELIVNAAK 100
>1j26_A Immature colon carcinoma transcript 1; peptide chain release
factors, RF-1, the GGQ motif, immature carcinoma
transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Length = 112
Score = 60.5 bits (146), Expect = 7e-12
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 25/98 (25%)
Query: 163 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG--------------- 207
A + + + L I RS G GGQ+ N NS V
Sbjct: 8 EHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALT 67
Query: 208 ----------MTISIQDERSQHMNKAKALKVLCAKLYE 235
+ ++ + R Q N A+ L+ + + E
Sbjct: 68 HKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAE 105
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 2e-09
Identities = 48/350 (13%), Positives = 96/350 (27%), Gaps = 82/350 (23%)
Query: 4 ISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK-RLQSLLL-----KSLL 57
+ + + ++ L+ L+Y+ + + + L I + L+ LL LL
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 58 PKDD-ADER-------DC-ILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE----- 103
+ + + C IL + T + +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKIL-L---TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 104 -----VVGVTESDLRGYKEASA----AISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHT 154
+ DL +E +S + G+
Sbjct: 305 SLLLKYLDCRPQDLP--REVLTTNPRRLSIIA----ESIRDGLATWDNWKHVNCDKLTTI 358
Query: 155 SAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI-- 212
S+ +L + + R + L + + HIPT + +S+
Sbjct: 359 IESSLNVL---EPAEYRKMFDRLSV--FPPS----------------AHIPT-ILLSLIW 396
Query: 213 -QDERSQHMNKAKAL--KVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRT-YNFP 268
+S M L L K + I +L+ + I YN P
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 269 QGRVTDHRVG----------ITHHAISDMMEGENLDIFIDALL----LQQ 304
+ +D + I HH + ++ E + +F L L+Q
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVFLDFRFLEQ 505
Score = 41.4 bits (96), Expect = 4e-04
Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 42/148 (28%)
Query: 3 LISEL---------RTKQKEIDGLKSLIYEC------SEDKDML-DMA---------TEE 37
+I+E K D L ++I +E + M ++ T
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 38 LCL------AIDEEKRLQSLLLKSLLPKDDADER----DCILEVRAGTGGEEASLFAVDV 87
L L D + L SL+ K + LE++ E +L
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV-KLENEYALHR--- 447
Query: 88 FKMYERYSQKKGWKFEVVGVTESDLRGY 115
+ + Y+ K + + + D Y
Sbjct: 448 -SIVDHYNIPKTFDSDDLIPPYLD--QY 472
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 1e-06
Identities = 51/271 (18%), Positives = 75/271 (27%), Gaps = 116/271 (42%)
Query: 12 KEID-GLKSLIYECSEDKDMLD---------MATEELCLAIDEEKRLQSLLLKS--LLPK 59
KEI+ S + +K +L E A E LKS L+P
Sbjct: 1708 KEINEHSTSYTFR--SEKGLLSATQFTQPALTLME---KAAFE-------DLKSKGLIPA 1755
Query: 60 DDADERDCILEVRAG---TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYK 116
D AG GE Y+
Sbjct: 1756 DA---------TFAGHSL--GE---------------YA--------------------- 1768
Query: 117 EASAAISGVGVYGKLKFESGIHRV-QR-------VPLTEKSGRVHTSAVSVAILPQADEV 168
A A+++ V + ES + V R VP E GR + + AI P V
Sbjct: 1769 -ALASLADV-----MSIESLVEVVFYRGMTMQVAVPRDE-LGRSNYGMI--AINP--GRV 1817
Query: 169 DVRLRNEDLRIDTYRSGGSGGQH---ANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 225
E L+ R G G N N + + +A
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNY-NVE--------NQQYVA----AGDL---RA 1861
Query: 226 LKVLCAKLYEMERSRI---HLSRSKLRSEQI 253
L + L ++ +I L +S L E++
Sbjct: 1862 LDTVTNVLNFIKLQKIDIIELQKS-LSLEEV 1891
Score = 35.8 bits (82), Expect = 0.019
Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 77/193 (39%)
Query: 103 EVVGVTESDLRGYKE----------ASAAISGVG--------VYGKLK--FESGIHRVQR 142
+++G T +LR Y + + AI+ V + F G+ +
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 143 VPLTEKSGRVHTSAVSVAILPQADEVD---------VR-LRNEDLRIDTYRSGGSGGQHA 192
P +++ +IL + E + + L E ++ +
Sbjct: 314 YP---------NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ-----------DYV 353
Query: 193 NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLC---AKLY-------------EM 236
N TN +H+P G + I S N AK L V+ LY +
Sbjct: 354 NKTN-----SHLPAGKQVEI----SLV-NGAKNL-VVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 237 ERSRIHLSRSKLR 249
++SRI S KL+
Sbjct: 403 DQSRIPFSERKLK 415
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.13
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 12/36 (33%)
Query: 92 ERYSQKKGWKFEVVGVTESDLRGYKEASA---AISG 124
E+ + KK ++ L+ Y + SA AI
Sbjct: 18 EKQALKK---------LQASLKLYADDSAPALAIKA 44
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 27.7 bits (62), Expect = 2.7
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 89 KMYERYSQKKGWKFEVVGV 107
+ YE++ K FEVV +
Sbjct: 52 EFYEKHHVAKN--FEVVLI 68
>2ygl_A Blood group A-and B-cleaving endo-beta-galactosid; hydrolase,
carbohydrate-binding module, blood group antigen; 2.10A
{Streptococcus pneumoniae} PDB: 2ygm_A*
Length = 354
Score = 27.6 bits (60), Expect = 5.6
Identities = 21/189 (11%), Positives = 61/189 (32%), Gaps = 23/189 (12%)
Query: 101 KFE-VVGV-TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 158
KFE +G+ ++ A + + GK+ + S + + R +T A
Sbjct: 82 KFETYIGIDQSANSSRSDHAVVDRIEIEIDGKVVYSSSV-------TNPEGFRYNTQAQF 134
Query: 159 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 218
+ V + + + + ++ + G ++ + T +T + ++
Sbjct: 135 I-------SVTIPQNAKKISLKSFAGEHTWGDEVVFADAKLIKTVSTQTITPDLLNKGIN 187
Query: 219 HMNKAKALKVLCAK-LYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRV 277
L+ + A + + + + +G + +I+ + +
Sbjct: 188 GGVYLSDLEWVDATHGDDDKSKTVQKDKP---FTPGNNGS-NNKIKLLIDGKEVEFNK-- 241
Query: 278 GITHHAISD 286
G+ A +
Sbjct: 242 GLGTVASNP 250
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.366
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,746,522
Number of extensions: 290311
Number of successful extensions: 568
Number of sequences better than 10.0: 1
Number of HSP's gapped: 545
Number of HSP's successfully gapped: 21
Length of query: 316
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 222
Effective length of database: 4,077,219
Effective search space: 905142618
Effective search space used: 905142618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.9 bits)