RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021200
(316 letters)
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 230 bits (587), Expect = 4e-74
Identities = 103/306 (33%), Positives = 167/306 (54%), Gaps = 8/306 (2%)
Query: 4 ISELRTKQKEIDGLKSLIYECSEDKDMLDMATEE-----LCLAIDEEKRLQSLLLKSLLP 58
S L +D +K + + S ++ A +E +D + + L +
Sbjct: 57 RSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMF 116
Query: 59 KDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEA 118
+ D DC L+++AG+GG EA +A + +MY R+++ +G+K E++ +E ++ G K
Sbjct: 117 SGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSV 176
Query: 119 SAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDL 177
+ ISG YG L+ E+G+HR+ R + GR HTS S + P+ D+ +D+ + DL
Sbjct: 177 TIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADL 236
Query: 178 RIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEME 237
RID YR+ G+GGQH N T SAVR+THIPTG+ Q++RSQH NK +A+K + AKLYE+E
Sbjct: 237 RIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVE 296
Query: 238 RSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFI 297
+ + + + + G +IR+Y R+ D R G+ +++G LD FI
Sbjct: 297 MQKKNAEKQAMEDNKSDIG-WGSQIRSYVLDDSRIKDLRTGVETRNTQAVLDGS-LDQFI 354
Query: 298 DALLLQ 303
+A L
Sbjct: 355 EASLKA 360
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
{Escherichia coli [TaxId: 562]}
Length = 344
Score = 214 bits (545), Expect = 4e-68
Identities = 150/308 (48%), Positives = 221/308 (71%), Gaps = 6/308 (1%)
Query: 4 ISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDAD 63
++ + Q++I+ + ++ +D +M +MA +EL A ++ ++L+ L LLPKD D
Sbjct: 42 FTDWQQVQEDIETAQMML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDD 97
Query: 64 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 123
ER+ LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ +E + GYKE A IS
Sbjct: 98 ERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKIS 157
Query: 124 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNED-LRIDTY 182
G GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ + ++ N LRIDT+
Sbjct: 158 GDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTF 217
Query: 183 RSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIH 242
RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH NKAKAL VL A+++ E ++
Sbjct: 218 RSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQ 277
Query: 243 LSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 302
+ + R +GSGDRS+R RTYNFPQGRVTDHR+ +T + + ++MEG+ LD+ I+ ++
Sbjct: 278 QAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGK-LDMLIEPIIQ 336
Query: 303 QQEMDAIA 310
+ + D +A
Sbjct: 337 EHQADQLA 344
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 208 bits (529), Expect = 9e-66
Identities = 131/308 (42%), Positives = 202/308 (65%), Gaps = 4/308 (1%)
Query: 6 ELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAID---EEKRLQSLLLKSLLPKDDA 62
+ +I+ ++++ E ++ +++ EE ++ EK L L + L
Sbjct: 24 NYGMEYAKIEEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQELLFLLSPE 83
Query: 63 DERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAI 122
I+E+R GTGGEEA+LFA D+F+MY RY+++KGW EV + E+DL G +E +
Sbjct: 84 ASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFV 143
Query: 123 SGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTY 182
G YG LK+ESG+HRVQRVP+TE GR+HTS +VA+LP+ +E D+ +R EDL+I+T+
Sbjct: 144 KGKNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETF 203
Query: 183 RSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIH 242
R+ G GGQ+ N T SAVR+TH+PTG+ +S Q+ERSQ+ NK AL++L A+LY++++ +
Sbjct: 204 RASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKE 263
Query: 243 LSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLL 302
S+ R QIG+G+RSE+IRTYNFPQ RVTDHR+ T + + ++++G+ LD I L+
Sbjct: 264 REISQKRKSQIGTGERSEKIRTYNFPQNRVTDHRINYTSYRLQEILDGD-LDEIISKLIE 322
Query: 303 QQEMDAIA 310
+ +
Sbjct: 323 HDIENNLE 330
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
10090]}
Length = 112
Score = 71.1 bits (174), Expect = 4e-16
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 25/98 (25%)
Query: 163 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI------------------ 204
A + + + L I RS G GGQ+ N NS V
Sbjct: 8 EHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALT 67
Query: 205 -------PTGMTISIQDERSQHMNKAKALKVLCAKLYE 235
+ ++ + R Q N A+ L+ + + E
Sbjct: 68 HKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAE 105
>d1wpba_ a.233.1.1 (A:) Hypothetical protein YfbU {Escherichia
coli [TaxId: 562]}
Length = 168
Score = 25.1 bits (55), Expect = 9.5
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 13/58 (22%)
Query: 48 LQSLLLKSLLPKDDADERDCILEVRAGTGG-------------EEASLFAVDVFKMYE 92
Q ++ L P + R + G G EE +D+ +MY
Sbjct: 17 NQYKMMTMLDPANAERYRRLQTIIERGYGLQMRELDREFGELKEETCRTIIDIMEMYH 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.366
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,105,245
Number of extensions: 50481
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 6
Length of query: 316
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,240,546
Effective search space: 286566126
Effective search space used: 286566126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.7 bits)