BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021201
         (316 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
 pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
 pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
 pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
          Length = 237

 Score = 33.5 bits (75), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 4  CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGK 56
          C E++ T    A  N  +E  K++    +KA A  LVD  D EG+  LHLA K
Sbjct: 40 CSEDQRTPLMEAAENNHLEAVKYL----IKAGA--LVDPKDAEGSTCLHLAAK 86


>pdb|1RM1|A Chain A, Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex
          Length = 240

 Score = 31.6 bits (70), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 8/78 (10%)

Query: 74  QRELLWFQAVKKVV----PRKLAEAKNKKGLTPRALFSEQHRDLKEKGEKWMKDTASSCM 129
           +  L  F+   K+V     R++ E +N+ G  P   F  +  D+K    +  KDT+++  
Sbjct: 4   EERLKEFKEANKIVFDPNTRQVWENQNRDGTKPATTFQSEE-DIKRAAPESEKDTSATSG 62

Query: 130 IVATL---IATVVFAAAL 144
           IV TL   +ATV     L
Sbjct: 63  IVPTLQNIVATVTLGCRL 80


>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
          Identical Consensus Repeats
          Length = 126

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 6/52 (11%)

Query: 5  DENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGK 56
          D+N  T  H+A  N  +E+ K +    ++A AD  V++ D  G   LHLA +
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLL----LEAGAD--VNAKDKNGRTPLHLAAR 77



 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 6/52 (11%)

Query: 5   DENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGK 56
           D+N  T  H+A  N  +E+ K +    ++A AD  V++ D  G   LHLA +
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLL----LEAGAD--VNAKDKNGRTPLHLAAR 110


>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
          Identical Consensus Repeats
 pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
          Identical Consensus Repeats
          Length = 93

 Score = 29.3 bits (64), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 6/52 (11%)

Query: 5  DENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLAGK 56
          D+N  T  H+A  N  +E+ K +    ++A AD  V++ D  G   LHLA +
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLL----LEAGAD--VNAKDKNGRTPLHLAAR 77


>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
          Complementary Protein-Protein Interface
 pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
          Complementary Protein-Protein Interface
 pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
          Complementary Protein-Protein Interface
 pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
          Complementary Protein-Protein Interface
          Length = 158

 Score = 28.5 bits (62), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 6/51 (11%)

Query: 4  CDENRYTIFHIAVSNRQVELFKFIDADDMKAIADLLVDSTDGEGNNILHLA 54
           D+N  T  H+A +N Q+E+ + +    +K  AD  V+++D  G   LHLA
Sbjct: 35 TDDNGLTPLHLAAANGQLEIVEVL----LKNGAD--VNASDSAGITPLHLA 79


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,359,435
Number of Sequences: 62578
Number of extensions: 309980
Number of successful extensions: 915
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 10
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)