BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021203
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HUO|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase In
Complex With Substrate
pdb|3BXD|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase
(Re-Refined)
Length = 289
Score = 260 bits (665), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 127/273 (46%), Positives = 177/273 (64%), Gaps = 5/273 (1%)
Query: 45 VAPEINSFGKTFRDYNAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWE 104
V PE+ +FR+Y + + V Y+L H +QT DFV + R +Y +M+I E
Sbjct: 21 VDPEMAKSKDSFRNYTSGPLLDR-VFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIME 79
Query: 105 CCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFG 164
+L+++VDESDPD+D P H Q+AE IRK +PD+DW HL L+HDLGK++ L
Sbjct: 80 AVGMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL---W 136
Query: 165 GLPQWAVVGDTFPLGCAFDESNVH-HKYFKENPDSNNPAYNTKNGIYTEGCGLDNVMISW 223
G PQWAVVGDTFP+GC S V F++NPD +P Y+T+ G+Y CGL+NV++SW
Sbjct: 137 GEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLENVLMSW 196
Query: 224 GHDDYMYLVAKENGTTLPSAGLFIVRYHSFYPLHKEGAYAHLMNEEDKENLKWLQVFNKY 283
GHD+Y+Y + K N +LPS +++R+HSFYP H G Y L +++D + L W+Q FNK+
Sbjct: 197 GHDEYLYQMMKFNKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLDMLPWVQEFNKF 256
Query: 284 DLYSKSKVLVDVEKVKPYYLSLIEKYFPAKLRW 316
DLY+K L DVE ++PYY LI+KY P L W
Sbjct: 257 DLYTKCPDLPDVESLRPYYQGLIDKYCPGTLSW 289
>pdb|2IBN|A Chain A, Crystal Structure Of Human Myo-Inositol Oxygenase (Miox)
Length = 246
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/245 (46%), Positives = 150/245 (61%), Gaps = 13/245 (5%)
Query: 73 YRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSA 132
Y+L H +QT DFV+ ++ + ++ E +LL+ +VDESD D P H Q+A
Sbjct: 9 YKLXHTHQTVDFVRSKHAQFGGFSYKKXTVXEAVDLLDGLVDESD---DFPNSFHAFQTA 65
Query: 133 EAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVH-HKY 191
E IRK +PD+DW HL L+HDLGKVL L G PQWAVVGDTFP+GC S V
Sbjct: 66 EGIRKAHPDKDWFHLVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGCRPQASVVFCDST 122
Query: 192 FKENPDSNNPAYNTKNGIYTEGCGLDNVMISWGHDDYMYLVAKENGTTLPSAGLFIVRYH 251
F++NPD +P Y+T+ G Y CGLD V+ SWGHD+Y Y V K N +LP + +R+H
Sbjct: 123 FQDNPDLQDPRYSTELGXYQPHCGLDRVLXSWGHDEYXYQVXKFNKFSLPPEAFYXIRFH 182
Query: 252 SFYPLHKEGAYAHLMNEEDKENLKWLQVFNKYDLYSKSKVLVDVEKVKPYYLSLIEKYFP 311
SFYP H Y L +++D L W++ FNK+DL L DV+K++PYY LI+KY P
Sbjct: 183 SFYPWHTGRDYQQLCSQQDLAXLPWVREFNKFDL------LPDVDKLRPYYQGLIDKYCP 236
Query: 312 AKLRW 316
L W
Sbjct: 237 GILSW 241
>pdb|2IBN|B Chain B, Crystal Structure Of Human Myo-Inositol Oxygenase (Miox)
Length = 240
Score = 211 bits (537), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 109/245 (44%), Positives = 146/245 (59%), Gaps = 19/245 (7%)
Query: 73 YRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSA 132
Y+L H +QT DFV+ ++ + ++ E +LL+ +VDES P H Q+A
Sbjct: 9 YKLXHTHQTVDFVRSKHAQFGGFSYKKXTVXEAVDLLDGLVDES------PNSFHAFQTA 62
Query: 133 EAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVH-HKY 191
E IRK +PD+DW HL L+HDLGKVL L G PQWAVVGDTFP+GC S V
Sbjct: 63 EGIRKAHPDKDWFHLVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGCRPQASVVFCDST 119
Query: 192 FKENPDSNNPAYNTKNGIYTEGCGLDNVMISWGHDDYMYLVAKENGTTLPSAGLFIVRYH 251
F++NPD +P Y+T+ G Y CGLD V+ SWGHD+Y Y V K N +LP + +R+H
Sbjct: 120 FQDNPDLQDPRYSTELGXYQPHCGLDRVLXSWGHDEYXYQVXKFNKFSLPPEAFYXIRFH 179
Query: 252 SFYPLHKEGAYAHLMNEEDKENLKWLQVFNKYDLYSKSKVLVDVEKVKPYYLSLIEKYFP 311
SFYP H Y L +++D L W++ FNK+DL V+K++PYY LI+KY P
Sbjct: 180 SFYPWHTGRDYQQLCSQQDLAXLPWVREFNKFDL---------VDKLRPYYQGLIDKYCP 230
Query: 312 AKLRW 316
L W
Sbjct: 231 GILSW 235
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 20/108 (18%)
Query: 205 TKNGIYTEGCGLDNVMISWGHDDYMYLVAKENGTTLPSAGLFIVRYHSFYPLHKEGAYAH 264
TK+GIY NV+ D Y + + TL S+G +++H+F + G A
Sbjct: 187 TKDGIY-------NVLKHAKADXXEYELEAQFDFTLKSSG---IKHHAFNTILASGKNAT 236
Query: 265 LMNEEDKENLKWLQVFNKYDLYSKSKVLVDVEKVKPYYLSLIEKYFPA 312
+++ ED N + + VL+D+ K YY + I FPA
Sbjct: 237 VLHYED----------NDAQIQNGDLVLLDLGAQKDYYNADISYTFPA 274
>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain
Length = 316
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 123 PQIQHLL-QSAEAIRKDYPDEDWLHLTALIHDL-GKVLTLPKFGGLPQWAVVGDTFPLGC 180
P Q++L +S + + ++PD+DW H++ DL K+L L V+ + GC
Sbjct: 243 PACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWVQGC 302
Query: 181 A 181
A
Sbjct: 303 A 303
>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g
pdb|2HW7|A Chain A, Crystal Structure Of Mnk2-D228g In Complex With
Staurosporine
Length = 316
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 123 PQIQHLL-QSAEAIRKDYPDEDWLHLTALIHDL-GKVLTLPKFGGLPQWAVVGDTFPLGC 180
P Q++L +S + + ++PD+DW H++ DL K+L L V+ + GC
Sbjct: 243 PACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWVQGC 302
Query: 181 A 181
A
Sbjct: 303 A 303
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 279 VFNKYDLYSKSKVLVDVEKVKPYYLSLIEKY 309
+ NKYD+ + +L + EK P Y LIEKY
Sbjct: 44 LLNKYDMQPNNAILAE-EKHMPMYQELIEKY 73
>pdb|3IYD|D Chain D, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
Length = 1413
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 64 ERQKSVEEFYRLQHINQTYD-FVKKMREEYAKLDKAEMSIWECCELLNEVVDESDPDLDE 122
ERQ+ + E L + + D F KM E + M + + CE L E ++E++ +
Sbjct: 155 ERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKR 214
Query: 123 PQIQHLLQSAEAIRKDYPDEDWLHLTAL 150
++ ++ EA + +W+ LT L
Sbjct: 215 KKLTKRIKLLEAFVQSGNKPEWMILTVL 242
>pdb|3LU0|D Chain D, Molecular Model Of Escherichia Coli Core Rna Polymerase
pdb|4IGC|D Chain D, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
pdb|4IGC|I Chain I, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
Length = 1407
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 64 ERQKSVEEFYRLQHINQTYD-FVKKMREEYAKLDKAEMSIWECCELLNEVVDESDPDLDE 122
ERQ+ + E L + + D F KM E + M + + CE L E ++E++ +
Sbjct: 155 ERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKR 214
Query: 123 PQIQHLLQSAEAIRKDYPDEDWLHLTAL 150
++ ++ EA + +W+ LT L
Sbjct: 215 KKLTKRIKLLEAFVQSGNKPEWMILTVL 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,988,583
Number of Sequences: 62578
Number of extensions: 512942
Number of successful extensions: 1202
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1188
Number of HSP's gapped (non-prelim): 24
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)